Citrus Sinensis ID: 038818
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 486 | 2.2.26 [Sep-21-2011] | |||||||
| P54770 | 533 | Tyrosine/DOPA decarboxyla | N/A | no | 0.995 | 0.908 | 0.723 | 0.0 | |
| P54769 | 531 | Tyrosine/DOPA decarboxyla | N/A | no | 0.995 | 0.911 | 0.724 | 0.0 | |
| P54768 | 518 | Tyrosine/DOPA decarboxyla | N/A | no | 0.993 | 0.932 | 0.735 | 0.0 | |
| P54771 | 523 | Tyrosine/DOPA decarboxyla | N/A | no | 0.993 | 0.923 | 0.709 | 0.0 | |
| Q06087 | 516 | Tyrosine decarboxylase 3 | N/A | no | 0.989 | 0.932 | 0.724 | 0.0 | |
| Q06088 | 508 | Tyrosine decarboxylase 4 | N/A | no | 0.989 | 0.946 | 0.722 | 0.0 | |
| Q06086 | 514 | Tyrosine decarboxylase 2 | N/A | no | 0.989 | 0.935 | 0.722 | 0.0 | |
| Q06085 | 432 | Tyrosine decarboxylase 1 | N/A | no | 0.888 | 1.0 | 0.741 | 0.0 | |
| Q8RY79 | 490 | Tyrosine decarboxylase 1 | yes | no | 0.981 | 0.973 | 0.571 | 1e-175 | |
| P17770 | 500 | Aromatic-L-amino-acid dec | N/A | no | 0.979 | 0.952 | 0.567 | 1e-174 |
| >sp|P54770|TYDC3_PAPSO Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/503 (72%), Positives = 427/503 (84%), Gaps = 19/503 (3%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D EEFRRQGHMIIDF+ADYYRDVEKYPV SQVEPGYLRKRLPE+APYNPE IETILQDV
Sbjct: 22 LDPEEFRRQGHMIIDFLADYYRDVEKYPVRSQVEPGYLRKRLPETAPYNPESIETILQDV 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP Y+AYFPSSGS+AGFLGEMLS+GFNVVGFNWMSSPAATELE IVMD
Sbjct: 82 TSEIIPGLTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNWMSSPAATELEGIVMD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML LPKS+LFSGTGGGV+QGTTCEAILCTL AARD+ LN+IGRE+I RLVVYGSDQ
Sbjct: 142 WFGKMLNLPKSYLFSGTGGGVLQGTTCEAILCTLTAARDRKLNKIGREHIGRLVVYGSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQIAGI+PKNFRA+KT K++SF L +L+ I DI+AGLIPLF+C TVGT
Sbjct: 202 THCALQKAAQIAGINPKNFRAVKTFKANSFGLAASTLREVILEDIEAGLIPLFVCPTVGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDP+GP+C++AK Y +WVH+DAAYAGSACICPEFRHFIDG+E ADSFSLNAHKWF
Sbjct: 262 TSSTAVDPIGPICEVAKEYEMWVHIDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWF 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FTTLDCCCLWVK+P++L+KALSTNPE+LRNKA++S+QVVDYKDWQI L RRFR++KLW+V
Sbjct: 322 FTTLDCCCLWVKDPSSLVKALSTNPEYLRNKATESRQVVDYKDWQIALIRRFRSMKLWMV 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSAS------- 413
LRS+GV NLRNFLRSHVRMA+ F+ LVG D RFEI PR FA+VCFR+LP +
Sbjct: 382 LRSYGVTNLRNFLRSHVRMAKTFEGLVGADRRFEITVPRTFAMVCFRLLPPTTVKVCGEN 441
Query: 414 GL---GDG------KANEG---ANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGAT 461
G+ G+G NE AN+LN+ L + A+G +Y++H +V G+Y IRFAVG+T
Sbjct: 442 GVHQNGNGVIAVLRNENEELVLANKLNQVYLRQVKATGSVYMTHAVVGGVYMIRFAVGST 501
Query: 462 LTEDRHVIAAWKVVQEKLDGILA 484
LTE+RHVI AW+V+QE D IL+
Sbjct: 502 LTEERHVIHAWEVLQEHADLILS 524
|
Marginally higher substrate specificity for L-DOPA over L-tyrosine. Papaver somniferum (taxid: 3469) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5 |
| >sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/501 (72%), Positives = 429/501 (85%), Gaps = 17/501 (3%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D EEFRRQGHMIIDF+ADYYRDVEKYPV SQVEPGYLRKRLPE+APYNPE IETILQDV
Sbjct: 22 LDPEEFRRQGHMIIDFLADYYRDVEKYPVRSQVEPGYLRKRLPETAPYNPESIETILQDV 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP Y+AYFPSSGS+AGFLGEMLS+GFNVVGFNWMSSPAATELE++VMD
Sbjct: 82 TTEIIPGLTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNWMSSPAATELESVVMD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML LP+SFLFSG+GGGV+QGT+CEAILCTL AARD+ LN+IGRE+I RLVVYGSDQ
Sbjct: 142 WFGKMLNLPESFLFSGSGGGVLQGTSCEAILCTLTAARDRKLNKIGREHIGRLVVYGSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQ+AGI+PKNFRAIKT K +SF L+ +L+ I DI+AGLIPLF+C TVGT
Sbjct: 202 THCALQKAAQVAGINPKNFRAIKTFKENSFGLSAATLREVILEDIEAGLIPLFVCPTVGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDP+ P+C++AK Y +WVHVDAAYAGSACICPEFRHFIDG+E ADSFSLNAHKWF
Sbjct: 262 TSSTAVDPISPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWF 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FTTLDCCCLWVK+P+AL+KALSTNPE+LRNKA++S+QVVDYKDWQI LSRRFR+LKLW+V
Sbjct: 322 FTTLDCCCLWVKDPSALVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRSLKLWMV 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSAS------G 414
LRS+GV NLRNFLRSHV+MA+ F+ L+ D RFEI PR FA+VCFR+LP + G
Sbjct: 382 LRSYGVTNLRNFLRSHVKMAKTFEGLICMDGRFEITVPRTFAMVCFRLLPPKTIKVYDNG 441
Query: 415 L---GDG-----KANEG---ANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLT 463
+ G+G NE AN+LN+ LE++NA+G +Y++H +V G+Y IRFAVG+TLT
Sbjct: 442 VHQNGNGVVPLRDENENLVLANKLNQVYLETVNATGSVYMTHAVVGGVYMIRFAVGSTLT 501
Query: 464 EDRHVIAAWKVVQEKLDGILA 484
E+RHVI AWK++QE D IL
Sbjct: 502 EERHVIYAWKILQEHADLILG 522
|
Marginally higher substrate specificity for L-DOPA over L-tyrosine. Papaver somniferum (taxid: 3469) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|P54768|TYDC1_PAPSO Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/491 (73%), Positives = 427/491 (86%), Gaps = 8/491 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D +EFRRQGHMIIDF+ADYY++VEKYPV +QV+PGYL+KRLPESAPYNPE IETIL+DV
Sbjct: 20 LDPDEFRRQGHMIIDFLADYYKNVEKYPVRTQVDPGYLKKRLPESAPYNPESIETILEDV 79
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP YFAYFPSSGSIAGFLGEMLS+GFNVVGFNWMSSPAATELE+IVM+
Sbjct: 80 TNDIIPGLTHWQSPNYFAYFPSSGSIAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMN 139
Query: 121 WLGEMLKLPKSFLFSGTGGG----VIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY 176
WLG+ML LPKSFLFS G V+QGTTCEAILCTL AARD++LN+IGRENI++LVVY
Sbjct: 140 WLGQMLTLPKSFLFSSDGSSGGGGVLQGTTCEAILCTLTAARDKMLNKIGRENINKLVVY 199
Query: 177 GSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236
SDQT SALQKAAQIAGI+PKNF AI T+K+++F L+P SLQ+ I DI++GL+PLFLCA
Sbjct: 200 ASDQTLSALQKAAQIAGINPKNFLAIATSKATNFGLSPNSLQSTILADIESGLVPLFLCA 259
Query: 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNA 296
TVGTT+ T VDP+GPLC +AK + IWVH+DAAYAGSACICPEFRHFIDG+E ADSFSLNA
Sbjct: 260 TVGTTSSTAVDPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNA 319
Query: 297 HKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK 356
HKWFFTTLDCCCLWVK+ ++L+KALST+PE+L+NKA+DSKQV+DYKDWQI LSRRFR++K
Sbjct: 320 HKWFFTTLDCCCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMK 379
Query: 357 LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSA---- 412
LWLVLRS+G+ANLR FLRSHV+MA+ FQ L+G DNRFEIV PR FA+VCFR+ P+A
Sbjct: 380 LWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCFRLKPAAIFRK 439
Query: 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAW 472
+ D NE+N KLLES+NASG++Y++H +V G+Y IRFAVGATLTE+RHV AW
Sbjct: 440 KIVEDDHIEAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAW 499
Query: 473 KVVQEKLDGIL 483
KVVQE D IL
Sbjct: 500 KVVQEHTDAIL 510
|
Marginally higher substrate specificity for L-DOPA over L-tyrosine. Papaver somniferum (taxid: 3469) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|P54771|TYDC5_PAPSO Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/499 (70%), Positives = 422/499 (84%), Gaps = 16/499 (3%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D +EFRRQGHMIIDF+ADYY++V K SQ PG ++ LPE+AP + E IETILQDV
Sbjct: 20 LDPDEFRRQGHMIIDFLADYYKNV-KVSSRSQANPGS-QQTLPETAPNHSESIETILQDV 77
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q I+PGITHWQSP YFAYFPSSGS+AGFLGEMLSSGFNVVGFNWMSSPAATELE+IVM+
Sbjct: 78 QNDIIPGITHWQSPNYFAYFPSSGSVAGFLGEMLSSGFNVVGFNWMSSPAATELESIVMN 137
Query: 121 WLGEMLKLPKSFLFSG------TGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLV 174
WLG+ML LPKSFLFS +GGGV+QGTTCEAILCTL A+RD++LN+IGRENI++LV
Sbjct: 138 WLGQMLNLPKSFLFSSDDNAGSSGGGVLQGTTCEAILCTLTASRDKMLNKIGRENINKLV 197
Query: 175 VYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFL 234
VY SDQTH ALQKAAQIAGI+PKNFRAI T+K++ F L+P++L + I DI++GL+PLFL
Sbjct: 198 VYASDQTHCALQKAAQIAGINPKNFRAIATSKATDFGLSPQALLSTILADIESGLVPLFL 257
Query: 235 CATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSL 294
CATVGTT+ T VDP+GPLC++AK++ IWVHVDAAYAGSACICPEFRHFIDG+E ADSFSL
Sbjct: 258 CATVGTTSSTAVDPIGPLCEVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEEADSFSL 317
Query: 295 NAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA 354
NAHKWFFTTLDCCCLWVK+ NAL+KALST+PE+L+NKA+DSKQV+DYKDWQI LSRRFR+
Sbjct: 318 NAHKWFFTTLDCCCLWVKDSNALVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRS 377
Query: 355 LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSA-- 412
+KLWLVLRS+GVANLR+FLRSHV+MA+ F L+ D RFEIV P FA+VCFR+ P+A
Sbjct: 378 MKLWLVLRSYGVANLRSFLRSHVKMAKHFDGLIAMDKRFEIVVPNTFAMVCFRLKPAAIF 437
Query: 413 -SGLGDGKAN-----EGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDR 466
LG+ + E NE+N KLLES+NASG +Y++H +V G+Y IRFAVGATLTE+R
Sbjct: 438 NGKLGENGVDYNCIEEKTNEINSKLLESVNASGSIYMTHAVVGGVYMIRFAVGATLTEER 497
Query: 467 HVIAAWKVVQEKLDGILAT 485
HV AWKV+QE D IL T
Sbjct: 498 HVSMAWKVIQEHTDAILGT 516
|
May play an important role in providing precursors for alkaloid synthesis in the roots and germinating seedlings. Papaver somniferum (taxid: 3469) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06087|TYDC3_PETCR Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/483 (72%), Positives = 412/483 (85%), Gaps = 2/483 (0%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
++ EEFRRQGH++IDF+ADYYR VE YPV SQV PGYLR+ LPESAPYNPE +ETILQDV
Sbjct: 22 LEPEEFRRQGHLMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDV 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q I+PGITHWQSP +FAYFPSSGS AGFLGEMLS+GFNVVGFNWM SPAATELEN+V D
Sbjct: 82 QTKIIPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWMVSPAATELENVVTD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML+LPKSFLFSG GGGV+QGTTCEAILCTL AARD+ L + G +NI +LVVY SDQ
Sbjct: 142 WFGKMLQLPKSFLFSGGGGGVLQGTTCEAILCTLVAARDKNLRQHGMDNIGKLVVYCSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
THSALQKAA+IAGIDPKNFRAI+TTKSS+F L P+ L++AI D+Q GLIPL+LCATVGT
Sbjct: 202 THSALQKAAKIAGIDPKNFRAIETTKSSNFKLCPKRLESAILYDLQNGLIPLYLCATVGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ TTVDPL L ++AK+Y +WVHVDAAYAGSACICPEFR ++DG+E ADSFSLNAHKWF
Sbjct: 262 TSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWF 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
TTLDCCCLWV++P+ALIK+LST PEFL+N AS++ +VVDYKDWQI LSRRFRALKLW V
Sbjct: 322 LTTLDCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFV 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LRS+GV LR F+R HV MA+ F+ LVG D RFE+VAPR F++VCFR+ PSA +G
Sbjct: 382 LRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAM-IGKNDE 440
Query: 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480
NE NE+NRKLLES+N SG++YVSH ++ GIY IRFA+G TLT+ HV AAWKV+Q+ D
Sbjct: 441 NE-VNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHAD 499
Query: 481 GIL 483
+L
Sbjct: 500 ALL 502
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06088|TYDC4_PETCR Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/483 (72%), Positives = 412/483 (85%), Gaps = 2/483 (0%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
++ EEFRRQGH++IDF+ADYYR VE YPV SQV PGYLR+ LPESAPYNPE +ETILQDV
Sbjct: 21 LEPEEFRRQGHLMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDV 80
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q I+PGITHWQSP +FAYFPSSGS AGFLGEMLS+GFNVVGFNWM SPAATELEN+V D
Sbjct: 81 QTKIIPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWMVSPAATELENVVTD 140
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML+LPKSFLFSG GGGV+QGTTCEAILCTL AARD+ L + G +NI +LVVY SDQ
Sbjct: 141 WFGKMLQLPKSFLFSGGGGGVLQGTTCEAILCTLVAARDKNLRQHGMDNIGKLVVYCSDQ 200
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
THSALQKAA+IAGIDPKNFRAI+TTKSS+F L P+ L++AI D+Q GLIPL+LCATVGT
Sbjct: 201 THSALQKAAKIAGIDPKNFRAIETTKSSNFKLCPKRLESAILYDLQNGLIPLYLCATVGT 260
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ TTVDPL L ++AK+Y +WVHVDAAYAGSACICPEFR ++DG+E ADSFSLNAHKWF
Sbjct: 261 TSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWF 320
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
TTLDCCCLWV++P+ALIK+LST PEFL+N AS++ +VVDYKDWQI LSRRFRALKLW V
Sbjct: 321 LTTLDCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFV 380
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LRS+GV LR F+R HV MA+ F+ LVG D RFE+VAPR F++VCFR+ PSA +G
Sbjct: 381 LRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAM-IGKNDE 439
Query: 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480
+E NE+NRKLLES+N SG++YVSH ++ GIY IRFA+G TLT+ HV AAWKV+Q+ D
Sbjct: 440 DE-VNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHAD 498
Query: 481 GIL 483
+L
Sbjct: 499 ALL 501
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06086|TYDC2_PETCR Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/483 (72%), Positives = 410/483 (84%), Gaps = 2/483 (0%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
++ EEFRRQGHM+IDF+ADYYR VE YPV SQV PGYLR+ LPESAPYNPE +ETILQDV
Sbjct: 20 LEPEEFRRQGHMMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDV 79
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q I+PGITHWQSP +FAYFPSSGS AGFLGEMLS+GFNVVGFNWM SPAATELEN+V D
Sbjct: 80 QTKIIPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWMVSPAATELENVVTD 139
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML+LPKSFLFSG GGGV+QGTTCEAILCTL AARD+ L + G +NI +LVVY SDQ
Sbjct: 140 WFGKMLQLPKSFLFSGGGGGVLQGTTCEAILCTLVAARDKNLRQHGMDNIGKLVVYCSDQ 199
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
THSALQKAA+IAGIDPKNFRAI+TTKSS+F L P+ L++AI D+Q GLIPL+LCATVGT
Sbjct: 200 THSALQKAAKIAGIDPKNFRAIETTKSSNFQLCPKRLESAILHDLQNGLIPLYLCATVGT 259
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ TTVDPL L ++AK+Y +WVHVDAAYAGSACICPEFR ++DG+E ADSFSLNAHKWF
Sbjct: 260 TSSTTVDPLPALTEVAKKYDLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWF 319
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
TTLDCCCLWV+NP+ALIK+LST PEFL+N AS++ +VVDYKDWQI LSRRFRALKLW V
Sbjct: 320 LTTLDCCCLWVRNPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFV 379
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LRS+GV LR F+R HV MA+ F+ LV D RFE+VAPR F++VCFR+ PSA +G
Sbjct: 380 LRSYGVGQLREFIRGHVGMAKYFEGLVNMDKRFEVVAPRLFSMVCFRIKPSAM-IGKNDE 438
Query: 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480
+E NE+NRKLLES+N SG++YVSH ++ GIY IRFA+G TLT+ HV AAWKV+Q+
Sbjct: 439 DE-VNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHAG 497
Query: 481 GIL 483
+L
Sbjct: 498 ALL 500
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q06085|TYDC1_PETCR Tyrosine decarboxylase 1 (Fragment) OS=Petroselinum crispum GN=TYRDC-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/434 (74%), Positives = 375/434 (86%), Gaps = 2/434 (0%)
Query: 5 EFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHI 64
EFRRQGH++IDF+ADYYR VE YPV SQV PGYLR+ LPESAPYNPE +ETILQDVQ I
Sbjct: 1 EFRRQGHLMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDVQTKI 60
Query: 65 VPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGE 124
+PGITHWQSP +FAYFPSSGS AGFLGEMLS+GFNVVGFNWM SPAATELEN+V DW G+
Sbjct: 61 IPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNWMVSPAATELENVVTDWFGK 120
Query: 125 MLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184
ML+LPKSFLFSG GGGV+QGTTCEAILCTL AARD+ L + G +NI +LVVY SDQTHSA
Sbjct: 121 MLQLPKSFLFSGGGGGVLQGTTCEAILCTLVAARDKNLRQHGMDNIGKLVVYCSDQTHSA 180
Query: 185 LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244
LQKAA+IAGIDPKNFRAI+T+KSS+F L P+ L++AI D+Q GLIPL+LCATVGTT+ T
Sbjct: 181 LQKAAKIAGIDPKNFRAIETSKSSNFKLCPKRLESAILYDLQNGLIPLYLCATVGTTSST 240
Query: 245 TVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL 304
TVDPL L ++AK+Y +WVHVDAAYAGSACICPEFR ++DG+E ADSFSLNAHKWF TTL
Sbjct: 241 TVDPLPALTEVAKKYKLWVHVDAAYAGSACICPEFRQYLDGVENADSFSLNAHKWFLTTL 300
Query: 305 DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF 364
DCCCLWV++P+ALIK+LST PEFL+N AS++ +VVDYKDWQI LSRRFRALKLW VLRS+
Sbjct: 301 DCCCLWVRDPSALIKSLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSY 360
Query: 365 GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGA 424
GV LR F+R HV MA+ F+ LVG DNRFE+VAPR F++VCFR+ PSA +G +E
Sbjct: 361 GVGQLREFIRGHVGMAKYFEGLVGMDNRFEVVAPRLFSMVCFRIKPSAM-IGKNDEDE-V 418
Query: 425 NELNRKLLESINAS 438
NE+NRKLLES+N S
Sbjct: 419 NEINRKLLESVNDS 432
|
Petroselinum crispum (taxid: 4043) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 614 bits (1583), Expect = e-175, Method: Compositional matrix adjust.
Identities = 276/483 (57%), Positives = 370/483 (76%), Gaps = 6/483 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MDSE+ R GH+++DFIADYY+ +E +PVLSQV+PGYL K LP+SAP +PE ++ +L DV
Sbjct: 12 MDSEQLREYGHLMVDFIADYYKTIEDFPVLSQVQPGYLHKLLPDSAPDHPETLDQVLDDV 71
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
+ I+PG+THWQSP +FAY+PS+ S+AGFLGEMLS+G +VGF+W++SPAATELE IV+D
Sbjct: 72 RAKILPGVTHWQSPSFFAYYPSNSSVAGFLGEMLSAGLGIVGFSWVTSPAATELEMIVLD 131
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W+ ++L LP+ F+ G GGGVIQG+ EA+L L AARD++L +G+ + +LVVY SDQ
Sbjct: 132 WVAKLLNLPEQFMSKGNGGGVIQGSASEAVLVVLIAARDKVLRSVGKNALEKLVVYSSDQ 191
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
THSALQKA QIAGI P+N R + T S+++ L PESLQ A+ D++AGLIP FLCA VGT
Sbjct: 192 THSALQKACQIAGIHPENCRVLTTDSSTNYALRPESLQEAVSRDLEAGLIPFFLCANVGT 251
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDPL L IA IW HVDAAYAGSACICPE+R +IDG+E ADSF++NAHKWF
Sbjct: 252 TSSTAVDPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGVETADSFNMNAHKWF 311
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
T DC LWVK+ ++L ALSTNPEFL+NKAS + VVDYKDWQI L RRFR+LKLW+V
Sbjct: 312 LTNFDCSLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMV 371
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LR +G L++++R+H+++A+ F++LV D FEIV PR FA+VCFR++P
Sbjct: 372 LRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVPVKD------E 425
Query: 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480
+ N NR+LL+++N+SG+L++SH ++G +R A+GA LTE++HV AWK++QE+
Sbjct: 426 EKKCNNRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEEAS 485
Query: 481 GIL 483
+L
Sbjct: 486 YLL 488
|
Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|P17770|DDC_CATRO Aromatic-L-amino-acid decarboxylase OS=Catharanthus roseus GN=TDC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 611 bits (1576), Expect = e-174, Method: Compositional matrix adjust.
Identities = 274/483 (56%), Positives = 376/483 (77%), Gaps = 7/483 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+++EEFR+Q H ++DFIADYY++VE YPVLS+VEPGYLRKR+PE+APY PEP++ I++D+
Sbjct: 22 LEAEEFRKQAHRMVDFIADYYKNVETYPVLSEVEPGYLRKRIPETAPYLPEPLDDIMKDI 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q+ I+PG+T+W SP ++A+FP++ S A FLGEMLS+ N VGF W+SSPAATELE IVMD
Sbjct: 82 QKDIIPGMTNWMSPNFYAFFPATVSSAAFLGEMLSTALNSVGFTWVSSPAATELEMIVMD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
WL ++LKLPKSF+FSGTGGGVIQ TT E+ILCT+ AAR++ L ++G ++I +LV YGSDQ
Sbjct: 142 WLAQILKLPKSFMFSGTGGGVIQNTTSESILCTIIAARERALEKLGPDSIGKLVCYGSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH+ K ++AGI P N R I TT + F ++P+ L+ ++ D+ AG +PLFLCAT+GT
Sbjct: 202 THTMFPKTCKLAGIYPNNIRLIPTTVETDFGISPQVLRKMVEDDVAAGYVPLFLCATLGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T DP+ L +IA + IW+HVDAAYAGSACICPEFRH++DGIE DS SL+ HKW
Sbjct: 262 TSTTATDPVDSLSEIANEFGIWIHVDAAYAGSACICPEFRHYLDGIERVDSLSLSPHKWL 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
LDC CLWVK P+ L++AL+TNPE+L+NK SD +VVD+K+WQI R+FR+LKLWL+
Sbjct: 322 LAYLDCTCLWVKQPHLLLRALTTNPEYLKNKQSDLDKVVDFKNWQIATGRKFRSLKLWLI 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LRS+GV NL++ +RS V M ++F+E V D+RFEIV PRNF++VCFR+ P S L
Sbjct: 382 LRSYGVVNLQSHIRSDVAMGKMFEEWVRSDSRFEIVVPRNFSLVCFRLKPDVSSL----- 436
Query: 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480
E+N+KLL+ +N++G++Y++H +V GIY +R AVG++LTE+ HV W ++Q+ D
Sbjct: 437 --HVEEVNKKLLDMLNSTGRVYMTHTIVGGIYMLRLAVGSSLTEEHHVRRVWDLIQKLTD 494
Query: 481 GIL 483
+L
Sbjct: 495 DLL 497
|
Catharanthus roseus (taxid: 4058) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 486 | ||||||
| 260060489 | 517 | tyrosine decarboxylase [Citrus reshni] g | 0.989 | 0.930 | 0.777 | 0.0 | |
| 12620328 | 518 | tyrosine/dopa decarboxylase [Thalictrum | 0.997 | 0.936 | 0.762 | 0.0 | |
| 260060487 | 517 | tyrosine decarboxylase [Citrus reshni] | 0.989 | 0.930 | 0.769 | 0.0 | |
| 217038851 | 537 | tyrosine/DOPA decarboxylase [Argemone me | 0.997 | 0.903 | 0.724 | 0.0 | |
| 115607203 | 516 | tyrosine decarboxylase [Aristolochia con | 0.993 | 0.936 | 0.758 | 0.0 | |
| 3282527 | 525 | tyrosine/dopa decarboxylase [Papaver som | 0.993 | 0.92 | 0.741 | 0.0 | |
| 3282525 | 531 | tyrosine/dopa decarboxylase [Papaver som | 0.995 | 0.911 | 0.726 | 0.0 | |
| 22261822 | 533 | RecName: Full=Tyrosine/DOPA decarboxylas | 0.995 | 0.908 | 0.723 | 0.0 | |
| 1717826 | 531 | RecName: Full=Tyrosine/DOPA decarboxylas | 0.995 | 0.911 | 0.724 | 0.0 | |
| 3282523 | 512 | tyrosine/dopa decarboxylase [Papaver som | 0.993 | 0.943 | 0.737 | 0.0 |
| >gi|260060489|gb|ACX29991.1| tyrosine decarboxylase [Citrus reshni] gi|260060491|gb|ACX29992.1| tyrosine decarboxylase [Citrus sinensis] gi|260060497|gb|ACX29995.1| tyrosine decarboxylase [Citrus aurantium] gi|260060499|gb|ACX29996.1| tyrosine decarboxylase [Citrus reticulata] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/490 (77%), Positives = 430/490 (87%), Gaps = 9/490 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+DSEEFRRQGHMIIDFIADYY++VEKYPV SQVEPGYL+K LPESAP NPE +ETILQDV
Sbjct: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQKVLPESAPNNPESMETILQDV 80
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
QQHIVPGITHWQSP YFAYFPSSGSIAGFLGEMLSSGFN+VGFNW+SSPAATELENIVMD
Sbjct: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
WLG+MLKLPKSFLFSG GGGVIQGTTCEAILCTL AARD++LN+IGRENIS+L+VYGSDQ
Sbjct: 141 WLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ 200
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQI GID KNFRAIKTTKSSS+ L+P+SL A I+ D++ GLIPLFLCAT+GT
Sbjct: 201 THCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGT 260
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
TAIT VDPL PLCD+AK++ IWVHVDAAYAGSACICPEFRHFIDG+EGADSFSLNAHKWF
Sbjct: 261 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWF 320
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
F TLDCCCLWVK+P AL+ +LSTNPE+L+NKA++S QVVDYKDWQITLSRRFR+LKLW V
Sbjct: 321 FATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFV 380
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
+R++GVANLR+FLRSHV MA+LF+ LV GD RFEIV P +FAVVCFRV PS + K
Sbjct: 381 IRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKT 440
Query: 421 N---------EGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAA 471
E NE NR+LLESINASG+ Y++H ++ GIY IRFA GATLTE RHV+ A
Sbjct: 441 KYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVA 500
Query: 472 WKVVQEKLDG 481
W VVQ+ L+
Sbjct: 501 WTVVQQHLEA 510
|
Source: Citrus reshni Species: Citrus reshni Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12620328|gb|AAG60665.1|AF314150_1 tyrosine/dopa decarboxylase [Thalictrum flavum subsp. glaucum] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/497 (76%), Positives = 431/497 (86%), Gaps = 12/497 (2%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D EEFRRQGHM+IDF+ADYYRD+EKYPV SQVEPGYLRK +P+SAPYNPE IETIL+DV
Sbjct: 21 LDPEEFRRQGHMMIDFLADYYRDIEKYPVRSQVEPGYLRKEIPDSAPYNPESIETILEDV 80
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
+ I+PGITHWQSP YFAYFPSSGS+AGFLGEMLS+GFNVVGFNWMSSPAATELE+IVMD
Sbjct: 81 HKQIIPGITHWQSPNYFAYFPSSGSVAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMD 140
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
WLG+MLKLPKSFLFSG GGGV+QGTTCEAILCTL AARD++LN+IGRENI +LVVYGSDQ
Sbjct: 141 WLGKMLKLPKSFLFSGNGGGVLQGTTCEAILCTLTAARDRMLNKIGRENICKLVVYGSDQ 200
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQIAGI P NFRA+ TTK++ + L+ +L++ I DI+AGL+PLFLCATVGT
Sbjct: 201 THCALQKAAQIAGIHPNNFRAVPTTKANDYGLSASALRSTILEDIEAGLVPLFLCATVGT 260
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDP+GPLC +A YSIWVHVDAAYAGSACICPEFRHFIDG+E ADSFSLNAHKWF
Sbjct: 261 TSSTAVDPIGPLCKVASDYSIWVHVDAAYAGSACICPEFRHFIDGVENADSFSLNAHKWF 320
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FTTLDCCCLWVK P+ALIKALSTNPE+LRNKA++S QVVDYKDWQI LSRRFRA+KLWLV
Sbjct: 321 FTTLDCCCLWVKEPSALIKALSTNPEYLRNKATESHQVVDYKDWQIALSRRFRAMKLWLV 380
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGL----- 415
LRS+GVANLRNFLRSHV+MA+ F+ + D RFEIV PR FA+VCFR+LP S L
Sbjct: 381 LRSYGVANLRNFLRSHVKMAKNFEGFIALDKRFEIVVPRTFAMVCFRLLPPRSPLIIKTN 440
Query: 416 ----GDG---KANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHV 468
G+G K ANELNR+LLESINASG Y++H MV G+Y IRFAVGA+LTE+RHV
Sbjct: 441 GYQNGNGVYHKDESRANELNRRLLESINASGSAYMTHSMVGGVYMIRFAVGASLTEERHV 500
Query: 469 IAAWKVVQEKLDGILAT 485
I AWKVVQE D +LAT
Sbjct: 501 ILAWKVVQEHADAVLAT 517
|
Source: Thalictrum flavum subsp. glaucum Species: Thalictrum flavum Genus: Thalictrum Family: Ranunculaceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|260060487|gb|ACX29990.1| tyrosine decarboxylase [Citrus reshni] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/490 (76%), Positives = 428/490 (87%), Gaps = 9/490 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+DSEEFRRQGHMIIDFIADYY++VEKYPV SQVEPGYL++ LPESAP NPE +ETILQDV
Sbjct: 21 LDSEEFRRQGHMIIDFIADYYKNVEKYPVRSQVEPGYLQRVLPESAPNNPESMETILQDV 80
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
QQHIVPGITHWQSP YFAYFPSSGSIAGFLGEMLSSGFN+VGFNW+SSPAATELENIVMD
Sbjct: 81 QQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMD 140
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
WLG+MLKLPKSFLFSG GGGVIQGTTCEAILCTL AARD++LN+IGRENIS+L+VYGSDQ
Sbjct: 141 WLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLIVYGSDQ 200
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQI GID KNFRAIKTTKSSS+ L+P+SL A I+ D++ GLIPLFLCAT+GT
Sbjct: 201 THCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGT 260
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
TAIT VDPL PLCD+AK++ IWVHVDAAYAGSACICPEFRHFIDG+EGADSFSLNAHKWF
Sbjct: 261 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWF 320
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
F TLDCCCLWVK+P AL+ +LSTNPE+L+NKA++S VVDYKDWQITLSRR R+LKLW V
Sbjct: 321 FATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMHVVDYKDWQITLSRRSRSLKLWFV 380
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
+R++GVANLR+FLRSHV MA+LF+ LV GD RFEIV P +FAVVCFRV PS + K
Sbjct: 381 IRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKT 440
Query: 421 N---------EGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAA 471
E NE NR+LLESINASG+ Y++H ++ GIY IRFA GATLTE +HV+ A
Sbjct: 441 KYVNCLLSEGEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKQHVVVA 500
Query: 472 WKVVQEKLDG 481
W VVQ+ L+
Sbjct: 501 WTVVQQHLEA 510
|
Source: Citrus reshni Species: Citrus reshni Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217038851|gb|ACJ76782.1| tyrosine/DOPA decarboxylase [Argemone mexicana] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/508 (72%), Positives = 433/508 (85%), Gaps = 23/508 (4%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
++ EEFR+QGHMIIDF+ADYYRD+EKYPV SQVEPGYLRKRLPE+APYNPE +E+IL+DV
Sbjct: 22 LEPEEFRKQGHMIIDFLADYYRDIEKYPVRSQVEPGYLRKRLPETAPYNPESMESILEDV 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q I+PGITHWQSP YFAYFPSSGSIAGFLGEMLS+GFNVVGFNWMSSPAATELE+IVMD
Sbjct: 82 QNEIIPGITHWQSPNYFAYFPSSGSIAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
WLG+MLKLPKSFLFSG GGGV+QGTTCEAILCTL AARD++LN+IGRENI RLVVYGSDQ
Sbjct: 142 WLGKMLKLPKSFLFSGNGGGVLQGTTCEAILCTLTAARDRMLNKIGRENIGRLVVYGSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQIAGI+PKNFRA++T K+ SF L+ ++L+ I D++AGLIPLF+C TVGT
Sbjct: 202 THCALQKAAQIAGINPKNFRAVQTFKAHSFGLSADTLRKVIRSDVEAGLIPLFVCPTVGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDP+GP+C++AK Y +WVHVDAAYAGSACICPEFRHFIDG+E ADSFSLNAHKWF
Sbjct: 262 TSSTAVDPIGPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGVENADSFSLNAHKWF 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FTTLDCCCLWVK+P+AL+KALSTNPE+LRNKA++SKQVVDYKDWQI LSRRFR++KLW+V
Sbjct: 322 FTTLDCCCLWVKDPSALVKALSTNPEYLRNKATESKQVVDYKDWQIALSRRFRSMKLWMV 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPS--------- 411
LR++GVANLRNFLRSHV+MA+ F+ L+ DNRFEI PR FA+VCFR+LP
Sbjct: 382 LRNYGVANLRNFLRSHVKMAKQFEGLIASDNRFEICVPRTFAMVCFRLLPPKSTRDNRVR 441
Query: 412 ------ASGLGDGKANEG--------ANELNRKLLESINASGQLYVSHGMVAGIYFIRFA 457
SG+ D + N AN+LN+ LE +NA+G LY++H +V GIY IRFA
Sbjct: 442 EEDGLFVSGVHDHENNINEDDHLLVVANKLNQIYLEKVNATGSLYMTHAVVGGIYMIRFA 501
Query: 458 VGATLTEDRHVIAAWKVVQEKLDGILAT 485
VG+TLTE+RH+ AWKV+QE D IL T
Sbjct: 502 VGSTLTEERHITHAWKVLQEHADTILGT 529
|
Source: Argemone mexicana Species: Argemone mexicana Genus: Argemone Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115607203|gb|ABJ16446.1| tyrosine decarboxylase [Aristolochia contorta] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/485 (75%), Positives = 426/485 (87%), Gaps = 2/485 (0%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D EEFRRQGHM+IDF+ADYYRDVEKYPV SQVEPGYLRKRLPESAPYNPEPIE+I+QDV
Sbjct: 21 LDPEEFRRQGHMMIDFLADYYRDVEKYPVRSQVEPGYLRKRLPESAPYNPEPIESIIQDV 80
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q HIVPGITHWQSP YFAYFPSSGS AGFLGEMLS+GFNVVGFNWMSSPAATELE+IVMD
Sbjct: 81 QSHIVPGITHWQSPNYFAYFPSSGSTAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMD 140
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
WLG+ML+LPKSFLFSG+ GGV+QGTTCEAILCTL AARD+ L EIGR I RLVVYGSDQ
Sbjct: 141 WLGKMLRLPKSFLFSGSEGGVLQGTTCEAILCTLTAARDRALCEIGRGEIGRLVVYGSDQ 200
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQIAGIDP NFRA+KT +S +F ++ +L+AA++ D GL+PLF+CATVGT
Sbjct: 201 THCALQKAAQIAGIDPANFRAVKTARSDNFGMSAAALRAAVEEDTARGLVPLFVCATVGT 260
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDPLGPLC++A+ + +WVHVDAAYAGSACICPEFRHFIDG+E ADSFSLNAHKW
Sbjct: 261 TSSTAVDPLGPLCEVAREHGMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWL 320
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FT LDCCCLWVK+P +L+KALSTNPE+LRNKA++S+QVVDYKDWQI LSRRFRALKLWLV
Sbjct: 321 FTILDCCCLWVKDPGSLVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRALKLWLV 380
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LRS+GV+NLRNFLR+HV+MA+ F+ L+ D RFE+V PR FA+VCFR+LP+ G G
Sbjct: 381 LRSYGVSNLRNFLRTHVKMAKTFEGLLAMDKRFEVVVPRTFAMVCFRLLPAGGGGGGDDE 440
Query: 421 N--EGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478
+ NELNRKLLESINASG++Y++H +V G+Y IRFAVGA+LTEDRHV AWKVVQ+
Sbjct: 441 EGLDAVNELNRKLLESINASGRIYMTHSVVGGVYMIRFAVGASLTEDRHVNLAWKVVQDH 500
Query: 479 LDGIL 483
D +L
Sbjct: 501 ADALL 505
|
Source: Aristolochia contorta Species: Aristolochia contorta Genus: Aristolochia Family: Aristolochiaceae Order: Piperales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3282527|gb|AAC61844.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/491 (74%), Positives = 428/491 (87%), Gaps = 8/491 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D +EFRRQGHMIIDF+ADYY++VEKYPV SQVEPGYL+KRLPESAPYNPE IETIL+DV
Sbjct: 20 LDPDEFRRQGHMIIDFLADYYKNVEKYPVRSQVEPGYLKKRLPESAPYNPESIETILEDV 79
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP YFAYFPSSGSIAGFLGEMLS+GFNVVGFNWMSSPAATELE+IVM+
Sbjct: 80 TNDIIPGLTHWQSPNYFAYFPSSGSIAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMN 139
Query: 121 WLGEMLKLPKSFLFSGTGGG----VIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY 176
WLG+ML LPKSFLFS G V+QGTTCEAILCTL AARD++LN+IGRENI++LVVY
Sbjct: 140 WLGQMLTLPKSFLFSSDGSSGGGGVLQGTTCEAILCTLTAARDKMLNKIGRENINKLVVY 199
Query: 177 GSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236
SDQTH ALQKAAQIAGI+PKNFRAI T+K+++F L+P SLQ+ I DI++GL+PLFLCA
Sbjct: 200 ASDQTHCALQKAAQIAGINPKNFRAIATSKATNFGLSPNSLQSTILADIESGLVPLFLCA 259
Query: 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNA 296
TVGTT+ T VDP+GPLC +AK + IWVH+DAAYAGSACICPEFRHFIDG+E ADSFSLNA
Sbjct: 260 TVGTTSSTAVDPIGPLCAVAKLHGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNA 319
Query: 297 HKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK 356
HKWFFTTLDCCCLWVK+ ++L+KALST+PE+L+NKA+DSKQV+DYKDWQI LSRRFR++K
Sbjct: 320 HKWFFTTLDCCCLWVKDSDSLVKALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMK 379
Query: 357 LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSA---- 412
LWLVLRS+G+ANLR FLRSHV+MA+ FQ L+G DNRFEIV PR FA+VCFR+ P+A
Sbjct: 380 LWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCFRLKPAAIFRK 439
Query: 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAW 472
+ D NE+N KLLES+NASG++Y++H +V G+Y IRFAVGATLTE+RHV AW
Sbjct: 440 KIVEDDHIEAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAW 499
Query: 473 KVVQEKLDGIL 483
KVVQE D IL
Sbjct: 500 KVVQEHTDAIL 510
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3282525|gb|AAC61843.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/501 (72%), Positives = 430/501 (85%), Gaps = 17/501 (3%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D EEFRRQGHMIIDF+ADYYRDVEKYPV SQVEPGYLRKRLPE+APYNPE IETILQDV
Sbjct: 22 LDPEEFRRQGHMIIDFLADYYRDVEKYPVRSQVEPGYLRKRLPETAPYNPESIETILQDV 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP Y+AYFPSSGS+AGFLGEMLS+GFNVVGFNWMSSPAATELE+IVMD
Sbjct: 82 TTEIIPGLTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML LP+SFLFSGTGGGV+QGT+CEAILCTL AARD+ LN+IGRE+I RLVVYGSDQ
Sbjct: 142 WFGKMLNLPESFLFSGTGGGVLQGTSCEAILCTLTAARDRKLNKIGREHIGRLVVYGSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQ+AGI+PKN+RA+KT K++SF L +L+ I DI+AGLIPLF+C TVGT
Sbjct: 202 THCALQKAAQVAGINPKNYRAVKTFKANSFGLAAATLKEVILEDIEAGLIPLFVCPTVGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDP+GP+C++AK Y +WVHVDAAYAGSACICPEFRHFIDG+E ADSFSLNAHKWF
Sbjct: 262 TSSTAVDPIGPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWF 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FTTLDCCCLWVK+ +AL+KALSTNPE+LRNKA++S+QVVDYKDWQI LSRRFR+LKLW+V
Sbjct: 322 FTTLDCCCLWVKDSSALVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRSLKLWMV 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSAS------G 414
LRS+G+ NLRNFLRSHV+MA+ F+ L+G D RFEI PR FA+VCFR+LP + G
Sbjct: 382 LRSYGITNLRNFLRSHVKMAKTFEGLIGMDGRFEITVPRTFAMVCFRLLPPTTIKVYDNG 441
Query: 415 L---GDG-----KANEG---ANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLT 463
+ G+G NE AN+LN+ LE++NA+G +Y++H +V G+Y IRFAVG+TLT
Sbjct: 442 VHQNGNGVVAVHNENETLLLANKLNQVYLETVNATGSVYMTHAVVGGVYMIRFAVGSTLT 501
Query: 464 EDRHVIAAWKVVQEKLDGILA 484
E+RHVI AWKV+QE D IL
Sbjct: 502 EERHVIHAWKVLQEHADLILG 522
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22261822|sp|P54770.2|TYDC3_PAPSO RecName: Full=Tyrosine/DOPA decarboxylase 3; Includes: RecName: Full=DOPA decarboxylase; Short=DDC; Includes: RecName: Full=Tyrosine decarboxylase gi|3282519|gb|AAC61840.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/503 (72%), Positives = 427/503 (84%), Gaps = 19/503 (3%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D EEFRRQGHMIIDF+ADYYRDVEKYPV SQVEPGYLRKRLPE+APYNPE IETILQDV
Sbjct: 22 LDPEEFRRQGHMIIDFLADYYRDVEKYPVRSQVEPGYLRKRLPETAPYNPESIETILQDV 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP Y+AYFPSSGS+AGFLGEMLS+GFNVVGFNWMSSPAATELE IVMD
Sbjct: 82 TSEIIPGLTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNWMSSPAATELEGIVMD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML LPKS+LFSGTGGGV+QGTTCEAILCTL AARD+ LN+IGRE+I RLVVYGSDQ
Sbjct: 142 WFGKMLNLPKSYLFSGTGGGVLQGTTCEAILCTLTAARDRKLNKIGREHIGRLVVYGSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQIAGI+PKNFRA+KT K++SF L +L+ I DI+AGLIPLF+C TVGT
Sbjct: 202 THCALQKAAQIAGINPKNFRAVKTFKANSFGLAASTLREVILEDIEAGLIPLFVCPTVGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDP+GP+C++AK Y +WVH+DAAYAGSACICPEFRHFIDG+E ADSFSLNAHKWF
Sbjct: 262 TSSTAVDPIGPICEVAKEYEMWVHIDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWF 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FTTLDCCCLWVK+P++L+KALSTNPE+LRNKA++S+QVVDYKDWQI L RRFR++KLW+V
Sbjct: 322 FTTLDCCCLWVKDPSSLVKALSTNPEYLRNKATESRQVVDYKDWQIALIRRFRSMKLWMV 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSAS------- 413
LRS+GV NLRNFLRSHVRMA+ F+ LVG D RFEI PR FA+VCFR+LP +
Sbjct: 382 LRSYGVTNLRNFLRSHVRMAKTFEGLVGADRRFEITVPRTFAMVCFRLLPPTTVKVCGEN 441
Query: 414 GL---GDG------KANEG---ANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGAT 461
G+ G+G NE AN+LN+ L + A+G +Y++H +V G+Y IRFAVG+T
Sbjct: 442 GVHQNGNGVIAVLRNENEELVLANKLNQVYLRQVKATGSVYMTHAVVGGVYMIRFAVGST 501
Query: 462 LTEDRHVIAAWKVVQEKLDGILA 484
LTE+RHVI AW+V+QE D IL+
Sbjct: 502 LTEERHVIHAWEVLQEHADLILS 524
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1717826|sp|P54769.1|TYDC2_PAPSO RecName: Full=Tyrosine/DOPA decarboxylase 2; Includes: RecName: Full=DOPA decarboxylase; Short=DDC; Includes: RecName: Full=Tyrosine decarboxylase gi|607747|gb|AAA62347.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/501 (72%), Positives = 429/501 (85%), Gaps = 17/501 (3%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D EEFRRQGHMIIDF+ADYYRDVEKYPV SQVEPGYLRKRLPE+APYNPE IETILQDV
Sbjct: 22 LDPEEFRRQGHMIIDFLADYYRDVEKYPVRSQVEPGYLRKRLPETAPYNPESIETILQDV 81
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP Y+AYFPSSGS+AGFLGEMLS+GFNVVGFNWMSSPAATELE++VMD
Sbjct: 82 TTEIIPGLTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNWMSSPAATELESVVMD 141
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W G+ML LP+SFLFSG+GGGV+QGT+CEAILCTL AARD+ LN+IGRE+I RLVVYGSDQ
Sbjct: 142 WFGKMLNLPESFLFSGSGGGVLQGTSCEAILCTLTAARDRKLNKIGREHIGRLVVYGSDQ 201
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
TH ALQKAAQ+AGI+PKNFRAIKT K +SF L+ +L+ I DI+AGLIPLF+C TVGT
Sbjct: 202 THCALQKAAQVAGINPKNFRAIKTFKENSFGLSAATLREVILEDIEAGLIPLFVCPTVGT 261
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDP+ P+C++AK Y +WVHVDAAYAGSACICPEFRHFIDG+E ADSFSLNAHKWF
Sbjct: 262 TSSTAVDPISPICEVAKEYEMWVHVDAAYAGSACICPEFRHFIDGVEEADSFSLNAHKWF 321
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
FTTLDCCCLWVK+P+AL+KALSTNPE+LRNKA++S+QVVDYKDWQI LSRRFR+LKLW+V
Sbjct: 322 FTTLDCCCLWVKDPSALVKALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRSLKLWMV 381
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSAS------G 414
LRS+GV NLRNFLRSHV+MA+ F+ L+ D RFEI PR FA+VCFR+LP + G
Sbjct: 382 LRSYGVTNLRNFLRSHVKMAKTFEGLICMDGRFEITVPRTFAMVCFRLLPPKTIKVYDNG 441
Query: 415 L---GDG-----KANEG---ANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLT 463
+ G+G NE AN+LN+ LE++NA+G +Y++H +V G+Y IRFAVG+TLT
Sbjct: 442 VHQNGNGVVPLRDENENLVLANKLNQVYLETVNATGSVYMTHAVVGGVYMIRFAVGSTLT 501
Query: 464 EDRHVIAAWKVVQEKLDGILA 484
E+RHVI AWK++QE D IL
Sbjct: 502 EERHVIYAWKILQEHADLILG 522
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3282523|gb|AAC61842.1| tyrosine/dopa decarboxylase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/491 (73%), Positives = 428/491 (87%), Gaps = 8/491 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
+D +EFRRQGHMIIDF+ADYY++VE YPV SQVEPGYL+KRLPESAPYNPE IETIL+DV
Sbjct: 20 LDPDEFRRQGHMIIDFLADYYKNVENYPVRSQVEPGYLKKRLPESAPYNPESIETILEDV 79
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
I+PG+THWQSP YFAYFPSSGSIAGFLGEMLS+GFNVVGFNWMSSPAATELE+IVM+
Sbjct: 80 TNDIIPGLTHWQSPNYFAYFPSSGSIAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMN 139
Query: 121 WLGEMLKLPKSFLFSGTGGG----VIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY 176
WLG+ML LPKSFLFS G V+QGTTCEAILCTL AARD++LN+IGRENI++LVVY
Sbjct: 140 WLGQMLTLPKSFLFSSDGSSGGGGVLQGTTCEAILCTLTAARDKMLNKIGRENINKLVVY 199
Query: 177 GSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236
S+QTH ALQKAAQIAGI+PKN RAIKT+K+++F L+P SLQ+AI DI++GL+PLFLCA
Sbjct: 200 ASNQTHCALQKAAQIAGINPKNVRAIKTSKATNFGLSPNSLQSAILADIESGLVPLFLCA 259
Query: 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNA 296
TVGTT+ T VDP+GPLC +AK Y IWVH+DAAYAGSACICPEFRHFIDG+E ADSFSLNA
Sbjct: 260 TVGTTSSTAVDPIGPLCAVAKLYGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLNA 319
Query: 297 HKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK 356
HKWFFTTLDCCCLWVK+ ++L+KALST+ E+L+NKA++SKQV+DYKDWQI LSRRFR++K
Sbjct: 320 HKWFFTTLDCCCLWVKDSDSLVKALSTSAEYLKNKATESKQVIDYKDWQIALSRRFRSMK 379
Query: 357 LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSA---- 412
LWLVLRS+GVANLR FLRSHV+MA+ FQ L+G DNRFEIV PR FA+VCFR+ P+A
Sbjct: 380 LWLVLRSYGVANLRTFLRSHVKMAKHFQGLMGMDNRFEIVVPRTFAMVCFRLKPAAIFKQ 439
Query: 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAW 472
+ + + NE+N KLLES+NASG++Y++H +V G+Y IRFAVGATLTE+RHV AW
Sbjct: 440 KIVDNDYIEDQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAW 499
Query: 473 KVVQEKLDGIL 483
KVVQE D IL
Sbjct: 500 KVVQEHTDAIL 510
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 486 | ||||||
| TAIR|locus:2038937 | 490 | AAS "AT2G20340" [Arabidopsis t | 0.981 | 0.973 | 0.573 | 2.6e-157 | |
| TAIR|locus:2139855 | 547 | TYRDC "L-tyrosine decarboxylas | 0.969 | 0.861 | 0.569 | 2.9e-151 | |
| UNIPROTKB|E1BV90 | 485 | DDC "Uncharacterized protein" | 0.960 | 0.962 | 0.426 | 2.4e-108 | |
| ZFIN|ZDB-GENE-040426-2656 | 480 | ddc "dopa decarboxylase" [Dani | 0.950 | 0.962 | 0.435 | 3.9e-108 | |
| UNIPROTKB|F1PFV0 | 480 | DDC "Uncharacterized protein" | 0.954 | 0.966 | 0.425 | 4.4e-107 | |
| UNIPROTKB|P27718 | 487 | DDC "Aromatic-L-amino-acid dec | 0.950 | 0.948 | 0.423 | 9.2e-107 | |
| MGI|MGI:94876 | 480 | Ddc "dopa decarboxylase" [Mus | 0.950 | 0.962 | 0.419 | 2.5e-106 | |
| RGD|2494 | 480 | Ddc "dopa decarboxylase (aroma | 0.950 | 0.962 | 0.413 | 1.1e-105 | |
| UNIPROTKB|P20711 | 480 | DDC "Aromatic-L-amino-acid dec | 0.950 | 0.962 | 0.413 | 2e-104 | |
| UNIPROTKB|P80041 | 486 | DDC "Aromatic-L-amino-acid dec | 0.952 | 0.952 | 0.412 | 6e-103 |
| TAIR|locus:2038937 AAS "AT2G20340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
Identities = 277/483 (57%), Positives = 372/483 (77%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MDSE+ R GH+++DFIADYY+ +E +PVLSQV+PGYL K LP+SAP +PE ++ +L DV
Sbjct: 12 MDSEQLREYGHLMVDFIADYYKTIEDFPVLSQVQPGYLHKLLPDSAPDHPETLDQVLDDV 71
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
+ I+PG+THWQSP +FAY+PS+ S+AGFLGEMLS+G +VGF+W++SPAATELE IV+D
Sbjct: 72 RAKILPGVTHWQSPSFFAYYPSNSSVAGFLGEMLSAGLGIVGFSWVTSPAATELEMIVLD 131
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
W+ ++L LP+ F+ G GGGVIQG+ EA+L L AARD++L +G+ + +LVVY SDQ
Sbjct: 132 WVAKLLNLPEQFMSKGNGGGVIQGSASEAVLVVLIAARDKVLRSVGKNALEKLVVYSSDQ 191
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
THSALQKA QIAGI P+N R + T S+++ L PESLQ A+ D++AGLIP FLCA VGT
Sbjct: 192 THSALQKACQIAGIHPENCRVLTTDSSTNYALRPESLQEAVSRDLEAGLIPFFLCANVGT 251
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDPL L IA IW HVDAAYAGSACICPE+R +IDG+E ADSF++NAHKWF
Sbjct: 252 TSSTAVDPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGVETADSFNMNAHKWF 311
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
T DC LWVK+ ++L ALSTNPEFL+NKAS + VVDYKDWQI L RRFR+LKLW+V
Sbjct: 312 LTNFDCSLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMV 371
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LR +G L++++R+H+++A+ F++LV D FEIV PR FA+VCFR++P + D +
Sbjct: 372 LRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVP----VKDEEK 427
Query: 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480
N NR+LL+++N+SG+L++SH ++G +R A+GA LTE++HV AWK++QE+
Sbjct: 428 K--CNNRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEEAS 485
Query: 481 GIL 483
+L
Sbjct: 486 YLL 488
|
|
| TAIR|locus:2139855 TYRDC "L-tyrosine decarboxylase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
Identities = 275/483 (56%), Positives = 368/483 (76%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEK----YPVLSQVEPGYLRKRLPESAPYNPEPIETI 56
MDSE R QGH+++DFIADYY++++ +PVLSQV+PGYLR LP+SAP PE ++ +
Sbjct: 60 MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKEL 119
Query: 57 LQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELEN 116
L DV + I+PGITHWQSP YFAY+ SS S+AGFLGEML++G +VVGF W++SPAATELE
Sbjct: 120 LDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEI 179
Query: 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY 176
IV+DWL ++L+LP FL +G GGGVIQGT CEA+L + AARD+IL ++G+ + +LVVY
Sbjct: 180 IVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVY 239
Query: 177 GSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236
GSDQTHS+ +KA I GI +N R +KT S+++ + PESL+ AI D+ G IP F+CA
Sbjct: 240 GSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICA 299
Query: 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNA 296
TVGTT+ VDPL PL +IAK+Y IW+HVDAAYAG+ACICPE+R FIDGIE ADSF++NA
Sbjct: 300 TVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNA 359
Query: 297 HKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ--VVDYKDWQITLSRRFRA 354
HKW F C LWVK+ +LI AL TNPE+L K SK+ VV+YKDWQI+LSRRFR+
Sbjct: 360 HKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVKVSKKDTVVNYKDWQISLSRRFRS 419
Query: 355 LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASG 414
LKLW+VLR +G NLRNF+R HV +A+ F++ V D FE+V R F++VCFR+ P
Sbjct: 420 LKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPV--- 476
Query: 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKV 474
DG ++ NE NR+LL ++N++G++++SH ++G + +RFAVGA LTE++HV AW++
Sbjct: 477 --DGDEDQ-CNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQI 533
Query: 475 VQE 477
+Q+
Sbjct: 534 IQK 536
|
|
| UNIPROTKB|E1BV90 DDC "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 211/495 (42%), Positives = 303/495 (61%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MD+ F ++G ++D++ADY +EK V VEPGYLR +P+ AP +PE E + +D+
Sbjct: 1 MDATAFHKRGKEMVDYVADYLEKIEKRQVFPNVEPGYLRTLIPDCAPQDPESFEDVFKDI 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFPS+ S L +ML G VGF+W +SPA TELE +++D
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPSASSFPALLADMLCGGIGCVGFSWAASPACTELETVMLD 120
Query: 121 WLGEMLKLPKSFLFS--GTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+M+ LP+ FL G GGGVIQG+ EA L L AAR + + + E +
Sbjct: 121 WLGKMISLPEEFLAGRDGQGGGVIQGSASEATLVALLAARTKTIRRVRSEKPELTEADIM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
RLV Y SDQ HS++++AA I+G+ K+ +F + +L+ +D D +GLI
Sbjct: 181 GRLVAYASDQAHSSVERAALISGVKMKS-----VPSDDTFAVHGSALKKILDEDKASGLI 235
Query: 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD 290
P F CAT+GTT + D L L I + +IW+H+DAAYAGSA ICPEFRHF++G+E AD
Sbjct: 236 PFFFCATLGTTPCCSFDKLLELGPICNKENIWMHIDAAYAGSAFICPEFRHFLNGVEFAD 295
Query: 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350
SF+ N HKW DC +WVK + LI A P +L++ +S + DY+ WQI L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKKRSDLIGAFKLEPLYLQHHHQESGLITDYRHWQIPLGR 355
Query: 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410
RFR+LKLW VLR +GV L+ +R HVR++ F+ LV D RFEI A +VCFR+
Sbjct: 356 RFRSLKLWFVLRMYGVTGLQEHIRKHVRLSHQFEHLVLQDERFEICAEVVLGLVCFRL-- 413
Query: 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470
+G+NELN+ LL+SIN + ++++ + + +RFA+ + E HV
Sbjct: 414 -----------KGSNELNKALLKSINEAKKIHLVPCHLREKFVLRFAICSRTVESTHVKF 462
Query: 471 AWKVVQEKLDGILAT 485
AW+ + + +L T
Sbjct: 463 AWQHISQLATELLKT 477
|
|
| ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 216/496 (43%), Positives = 308/496 (62%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MD+ EFRR+G ++D++ADY ++EK V VEPGYLR +PE AP PE E +++D+
Sbjct: 1 MDAAEFRRRGREMVDYVADYIENIEKRQVYPDVEPGYLRSLIPEEAPEEPESYEDVVKDI 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY++AYFP++ S L ++L +GF+W +SPA TELE +++D
Sbjct: 61 ERVIMPGVTHWHSPYFYAYFPTAHSYPAMLADILCGAIGCIGFSWAASPACTELETVMLD 120
Query: 121 WLGEMLKLPKSFLFS--GTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+MLKLP+ FL G GGGVIQ T EA L TL AAR +I+ I ++ I
Sbjct: 121 WLGKMLKLPEDFLAGTKGKGGGVIQSTASEATLITLLAARSKIVRLIQADHPDRSETDII 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
S+LV Y SDQ HS++++A I G+ K K S F++ ++L+ + D AGLI
Sbjct: 181 SKLVAYSSDQAHSSVERAGLIGGVRMK-----KIPTDSKFSVRGDALERILKEDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F CAT+GTTA D LGP+C+ K +W+H+DAAYAGSA ICPEFR ++GIE
Sbjct: 236 PFFFCATLGTTASCAFDCITELGPICNAEK---MWMHIDAAYAGSAFICPEFRPLLNGIE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK +I A P +L++ +S V DY+ WQI
Sbjct: 293 FADSFNFNPHKWLLINFDCSAMWVKKRADIIGAFKMEPLYLKHDHQESGLVTDYRHWQIP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +G+ L+ ++R HV +A+ F+ V D RFEI A +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGLKALQAYIRKHVGLAKEFEAFVRADQRFEISADVVMGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G NEL+ LL+ IN++ ++++ +AG++ +RFAV A TE RH
Sbjct: 413 L-------------KGPNELSENLLKRINSARKIHLVPCHLAGLFVLRFAVCARATESRH 459
Query: 468 VIAAWKVVQEKLDGIL 483
V AW +++ +L
Sbjct: 460 VQEAWCHIRQLASELL 475
|
|
| UNIPROTKB|F1PFV0 DDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 212/498 (42%), Positives = 304/498 (61%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MDS EFRR+G ++DF+ADY +E V VEPGYLR +P +AP P+ E I+ DV
Sbjct: 1 MDSAEFRRRGKEMVDFVADYLEGIEGRQVYPDVEPGYLRPLIPTTAPEEPDMFEDIISDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SP++FAYFPS+ S L ++L +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPFFFAYFPSANSYPALLADILCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLFS--GTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+MLKLP++FL G GGGVIQG+ EA L L AAR ++ + + +
Sbjct: 121 WLGKMLKLPEAFLAGQVGEGGGVIQGSASEATLVALLAARTKVTRRLQAASPGLTQGAIM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + F + +LQ A++ D GLI
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGV---KLKAIPS--DGKFAMRASALQEALERDKAEGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT+ + D L GP+C+ + +W+H+DAAYAGS+ ICPEFRH ++G+E
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICN---KEDMWLHIDAAYAGSSFICPEFRHLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK LI A +P +L++ DS + DY+ WQ+
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLIGAFKLDPLYLKHNHQDSGLITDYRHWQLP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HVR+A F+ LV D RFEI +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVRLAHEFERLVQQDPRFEICTEVTLGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G+N LN +LLE IN++ ++++ + + +RFA+ A E H
Sbjct: 413 L-------------KGSNRLNEELLERINSAKKIHLVPCHLRDKFVLRFAICARTVESAH 459
Query: 468 VIAAWKVVQEKLDGILAT 485
V AWK V + +LAT
Sbjct: 460 VQLAWKHVAQLATSLLAT 477
|
|
| UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
Identities = 210/496 (42%), Positives = 305/496 (61%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ EFRR+G ++D++ADY +E V V+PGYLR +P +AP PE E I++D+
Sbjct: 1 MNASEFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDI 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP++FL +G GGGVIQGT EA L L AAR ++ + + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS+++KA I G+ +AI + F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYASDQAHSSVEKAGLIGGV---RLKAIPS--DGKFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT+ + D L GP+C +W+HVDAAYAGSA ICPEFRH ++G+E
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICH---EEGLWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK L A +P +LR+ DS + DY+ WQ+
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPVYLRHSHQDSGLITDYRHWQLP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV+++ F+ LV D RFEI A +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHAFEALVRQDTRFEICAEVILGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G+N+LN LLESIN++ ++++ + + +RFA+ + E H
Sbjct: 413 L-------------KGSNKLNEALLESINSAKKIHLVPCSLRDRFVLRFAICSRTVELAH 459
Query: 468 VIAAWKVVQEKLDGIL 483
V AW+ +QE +L
Sbjct: 460 VQLAWEHIQEMAATVL 475
|
|
| MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 208/496 (41%), Positives = 309/496 (62%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MDS EFRR+G ++D+IADY +E PV VEPGYLR +P +AP PE E I++D+
Sbjct: 1 MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDI 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP++FL +G GGGVIQG+ EA L L AAR +++ ++ + +
Sbjct: 121 WLGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I GI +A+ + +F++ +L+ A++ D AGLI
Sbjct: 181 EKLVAYTSDQAHSSVERAGLIGGI---KLKAVPS--DGNFSMRASALREALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT+ + D L GP+C+ + +W+H+DAAYAGSA ICPEFR+ ++G+E
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICN---QEGVWLHIDAAYAGSAFICPEFRYLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK L A + +P +L++ DS + DY+ WQI
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFNMDPVYLKHSHQDSGFITDYRHWQIP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV ++ F+ LV D RFEI +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVELSHEFESLVRQDPRFEICTEVILGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G+NELN LL+ IN++ ++++ + + +RFAV A E H
Sbjct: 413 L-------------KGSNELNETLLQRINSAKKIHLVPCRLRDKFVLRFAVCARTVESAH 459
Query: 468 VIAAWKVVQEKLDGIL 483
V AW+ + + +L
Sbjct: 460 VQLAWEHISDLASSVL 475
|
|
| RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 205/496 (41%), Positives = 311/496 (62%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MDS EFRR+G ++D+IADY +E PV VEPGYLR +P +AP PE E I++D+
Sbjct: 1 MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDI 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP++FL +G GGGVIQG+ EA L L AAR +++ ++ + +
Sbjct: 121 WLGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKMIRQLQAASPELTQAALM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + ++++ +L+ A++ D AGLI
Sbjct: 181 EKLVAYTSDQAHSSVERAGLIGGV---KIKAIPS--DGNYSMRAAALREALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ T+GTT+ + D L GP+C+ + +W+H+DAAYAGSA ICPEFR+ ++G+E
Sbjct: 236 PFFVVVTLGTTSCCSFDNLLEVGPICN---QEGVWLHIDAAYAGSAFICPEFRYLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK L +A + +P +LR+ DS + DY+ WQI
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLTEAFNMDPVYLRHSHQDSGLITDYRHWQIP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV+++ F+ LV D RFEI +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVKLSHEFESLVRQDPRFEICTEVILGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G+N+LN LL+ IN++ ++++ + + +RFAV + E H
Sbjct: 413 L-------------KGSNQLNETLLQRINSAKKIHLVPCRLRDKFVLRFAVCSRTVESAH 459
Query: 468 VIAAWKVVQEKLDGIL 483
V AW+ +++ +L
Sbjct: 460 VQLAWEHIRDLASSVL 475
|
|
| UNIPROTKB|P20711 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 205/496 (41%), Positives = 306/496 (61%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ EFRR+G ++D++A+Y +E V VEPGYLR +P +AP P+ E I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LPK+FL +G GGGVIQG+ EA L L AAR ++++ + + +
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + +F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGV---KLKAIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT + D L GP+C+ + IW+HVDAAYAGSA ICPEFRH ++G+E
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICN---KEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK L A +P +L++ DS + DY+ WQI
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV+++ F+ LV D RFEI +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ +G+N++N LL+ IN++ ++++ + + +RFA+ + E H
Sbjct: 413 L-------------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAH 459
Query: 468 VIAAWKVVQEKLDGIL 483
V AW+ ++E +L
Sbjct: 460 VQRAWEHIKELAADVL 475
|
|
| UNIPROTKB|P80041 DDC "Aromatic-L-amino-acid decarboxylase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 205/497 (41%), Positives = 303/497 (60%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ +FRR+G ++D++ADY +E V V+PGYLR +P +AP P+ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP++FL +G GGGVIQG+ EA L L AAR +++ + + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGV---KLKAIPS--DGKFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
P F+ AT+GTT+ + D L GP+C IW+HVDAAYAGSA ICPEFRH ++G+E
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICH---EEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
ADSF+ N HKW DC +WVK L A +P +L++ S + DY+ WQ+
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLP 352
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
L RRFR+LK+W V R +GV L+ ++R HV+++ F+ V D RFE+ A +VCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFR 412
Query: 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467
+ K ++G NE LLE IN++ ++++ + G + +RFA+ + E H
Sbjct: 413 L----------KGSDGLNEA---LLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGH 459
Query: 468 VIAAWKVVQEKLDGILA 484
V AW+ ++ +LA
Sbjct: 460 VRLAWEHIRGLAAELLA 476
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O88533 | DDC_MOUSE | 4, ., 1, ., 1, ., 2, 8 | 0.4193 | 0.9506 | 0.9625 | yes | no |
| P54768 | TYDC1_PAPSO | 4, ., 1, ., 1, ., 2, 5 | 0.7352 | 0.9938 | 0.9324 | N/A | no |
| P54769 | TYDC2_PAPSO | 4, ., 1, ., 1, ., 2, 5 | 0.7245 | 0.9958 | 0.9114 | N/A | no |
| P14173 | DDC_RAT | 4, ., 1, ., 1, ., 2, 8 | 0.4133 | 0.9506 | 0.9625 | yes | no |
| P20711 | DDC_HUMAN | 4, ., 1, ., 1, ., 2, 8 | 0.4133 | 0.9506 | 0.9625 | yes | no |
| P80041 | DDC_PIG | 4, ., 1, ., 1, ., 2, 8 | 0.4089 | 0.9362 | 0.9362 | yes | no |
| Q7XHL3 | TYDC1_ORYSJ | 4, ., 1, ., 1, ., 2, 5 | 0.5465 | 0.9814 | 0.9597 | yes | no |
| P05031 | DDC_DROME | 4, ., 1, ., 1, ., 2, 8 | 0.3877 | 0.9444 | 0.9 | yes | no |
| P17770 | DDC_CATRO | 4, ., 1, ., 1, ., 2, 8 | 0.5672 | 0.9794 | 0.952 | N/A | no |
| P54771 | TYDC5_PAPSO | 4, ., 1, ., 1, ., 2, 5 | 0.7094 | 0.9938 | 0.9235 | N/A | no |
| P54770 | TYDC3_PAPSO | 4, ., 1, ., 1, ., 2, 5 | 0.7236 | 0.9958 | 0.9080 | N/A | no |
| Q8RY79 | TYDC1_ARATH | 4, ., 1, ., 1, ., 2, 5 | 0.5714 | 0.9814 | 0.9734 | yes | no |
| P22781 | DDC_CAVPO | 4, ., 1, ., 1, ., 2, 8 | 0.4072 | 0.9506 | 0.9625 | yes | no |
| Q06088 | TYDC4_PETCR | 4, ., 1, ., 1, ., 2, 5 | 0.7225 | 0.9897 | 0.9468 | N/A | no |
| P27718 | DDC_BOVIN | 4, ., 1, ., 1, ., 2, 8 | 0.4193 | 0.9506 | 0.9486 | yes | no |
| Q06087 | TYDC3_PETCR | 4, ., 1, ., 1, ., 2, 5 | 0.7246 | 0.9897 | 0.9321 | N/A | no |
| Q06086 | TYDC2_PETCR | 4, ., 1, ., 1, ., 2, 5 | 0.7225 | 0.9897 | 0.9357 | N/A | no |
| Q06085 | TYDC1_PETCR | 4, ., 1, ., 1, ., 2, 5 | 0.7419 | 0.8888 | 1.0 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00028367001 | SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (492 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00037462001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (427 aa) | • | 0.899 | ||||||||
| GSVIVG00032723001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa) | • | 0.899 | ||||||||
| GSVIVG00032463001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa) | • | 0.899 | ||||||||
| GSVIVG00027735001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (422 aa) | • | 0.899 | ||||||||
| GSVIVG00018772001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (423 aa) | • | 0.899 | ||||||||
| GSVIVG00018632001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (419 aa) | • | 0.899 | ||||||||
| GSVIVG00018631001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (419 aa) | • | 0.899 | ||||||||
| GSVIVG00018628001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (419 aa) | • | 0.899 | ||||||||
| GSVIVG00016723001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa) | • | 0.899 | ||||||||
| GSVIVG00016002001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (703 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 486 | |||
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 0.0 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 0.0 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 0.0 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 1e-113 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 9e-70 | |
| TIGR03799 | 522 | TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend | 1e-20 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 2e-12 | |
| PRK13520 | 371 | PRK13520, PRK13520, L-tyrosine decarboxylase; Prov | 2e-11 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-10 | |
| PRK02769 | 380 | PRK02769, PRK02769, histidine decarboxylase; Provi | 2e-08 | |
| PLN03032 | 374 | PLN03032, PLN03032, serine decarboxylase; Provisio | 2e-04 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 0.004 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 705 bits (1822), Expect = 0.0
Identities = 291/486 (59%), Positives = 386/486 (79%), Gaps = 6/486 (1%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
MD+E+ R GH ++DFIADYY+ +E +PVLSQV+PGYLR+ LP+SAP PE ++ +L DV
Sbjct: 10 MDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDV 69
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
Q I+PG+THWQSP YFAY+PS+ S+AGFLGEMLS+G N+VGF+W++SPAATELE IV+D
Sbjct: 70 QAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLD 129
Query: 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180
WL ++L LP+ FL +G GGGVIQGT EA+L L AARD++L ++G+ + +LVVY SDQ
Sbjct: 130 WLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQ 189
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
THSALQKA QIAGI P+N R +KT S+++ L PE L AI D+ +GLIP FLCATVGT
Sbjct: 190 THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGT 249
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T+ T VDPL L IAK +W HVDAAYAGSACICPE+RH+IDG+E ADSF++NAHKWF
Sbjct: 250 TSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWF 309
Query: 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV 360
T DC LWVK+ NALI++LSTNPEFL+NKAS + VVDYKDWQI L RRFR+LKLW+V
Sbjct: 310 LTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMV 369
Query: 361 LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA 420
LR +GV NL++++R+H+++A+ F++LV D+RFE+V PR F++VCFR++P + +G
Sbjct: 370 LRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNG-- 427
Query: 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480
N+LN LL+++N+SG++++SH +++G Y +RFAVGA LTE+RHV AAWKV+Q++
Sbjct: 428 ----NKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEAS 483
Query: 481 GILATS 486
+L S
Sbjct: 484 KLLGKS 489
|
Length = 490 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 600 bits (1547), Expect = 0.0
Identities = 274/481 (56%), Positives = 365/481 (75%), Gaps = 10/481 (2%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEK----YPVLSQVEPGYLRKRLPESAPYNPEPIETI 56
MDSE R QGH+++DFIADYY++++ +PVLSQV+PGYLR LP+SAP PE ++ +
Sbjct: 54 MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKEL 113
Query: 57 LQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELEN 116
L DV + I+PGITHWQSP YFAY+ SS S+AGFLGEML++G +VVGF W++SPAATELE
Sbjct: 114 LDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEI 173
Query: 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY 176
IV+DWL ++L+LP FL +G GGGVIQGT CEA+L + AARD+IL ++G+ + +LVVY
Sbjct: 174 IVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVY 233
Query: 177 GSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236
GSDQTHS+ +KA I GI +N R +KT S+++ + PESL+ AI D+ G IP F+CA
Sbjct: 234 GSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICA 293
Query: 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNA 296
TVGTT+ VDPL PL +IAK+Y IW+HVDAAYAG+ACICPE+R FIDGIE ADSF++NA
Sbjct: 294 TVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNA 353
Query: 297 HKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK 356
HKW F C LWVK+ +LI AL TNPE+L K S VV+YKDWQI+LSRRFR+LK
Sbjct: 354 HKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLK 413
Query: 357 LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLG 416
LW+VLR +G NLRNF+R HV +A+ F++ V D FE+V R F++VCFR+ P
Sbjct: 414 LWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPV----- 468
Query: 417 DGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476
DG + NE NR+LL ++N++G++++SH ++G + +RFAVGA LTE++HV AW+++Q
Sbjct: 469 DGD-EDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQ 527
Query: 477 E 477
+
Sbjct: 528 K 528
|
Length = 539 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 519 bits (1338), Expect = 0.0
Identities = 200/376 (53%), Positives = 254/376 (67%), Gaps = 8/376 (2%)
Query: 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEML 94
PGYLR LPE+AP PEP+ IL D++++I+PG+T W SP + AYFP+ S LG+ML
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 95 SSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTL 154
S N GF W SSPA TELEN+VMDWL +ML LPK FL SG GGGV+QG + E+ L L
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120
Query: 155 AAARDQILNEI---GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFT 211
AAR + + + G+ ++ +LV Y SDQ HS+++KAA IAG++ R I T ++
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVE---LREIPTDEN--GK 175
Query: 212 LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271
+ L+ AI+ D + GLIP F+CAT+GTT DPL L DI +Y +W+HVDAAYAG
Sbjct: 176 MRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAG 235
Query: 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNK 331
SA ICPEFRH++ GIE ADSFS N HKW LDC LWV++ AL +AL NPE+L +
Sbjct: 236 SAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHN 295
Query: 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN 391
S VDY DWQI LSRRFR LKLW VLRS+GV L+N +R HV +A+ F+ LV D+
Sbjct: 296 DKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVRKDS 355
Query: 392 RFEIVAPRNFAVVCFR 407
RFEI A R +VCFR
Sbjct: 356 RFEICAERGLGLVCFR 371
|
Length = 373 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 336 bits (865), Expect = e-113
Identities = 127/405 (31%), Positives = 181/405 (44%), Gaps = 64/405 (15%)
Query: 76 YFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFS 135
+ A F ++ L EML+S N + F W SPAATE+E V++WL ++ LP S
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP-----S 55
Query: 136 GTGGGVIQGTTCEAILCTLAAARDQILNE---IGRENISRLVVYGSDQTHSALQKAAQIA 192
GV E+ L L AARD+ G I +LV+ SDQ H +++KAA
Sbjct: 56 EDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL 115
Query: 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPL 252
+ R + + + PE+L+AAID D GL P+ + AT GTT +DPL +
Sbjct: 116 DV---KVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK 312
D+A++Y +W+HVDAAY G PE RH GIE DS S++ HK+ L C + V
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV- 229
Query: 313 NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNF 372
RALKLW LR FG
Sbjct: 230 ----------------------------------------RALKLWATLRRFGRDGYGEH 249
Query: 373 LRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLL 432
+ V +A+ EL+ D FE++ N ++VCFR+ PS +ELN L
Sbjct: 250 IDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVK----------LDELNYDLS 299
Query: 433 ESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477
+ +N G +V + G +RF V LT A + ++
Sbjct: 300 DRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 9e-70
Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 34/482 (7%)
Query: 14 IDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQ-QHIVPGITHWQ 72
ID + D K + P + AP EP+E +L ++ I +
Sbjct: 1 IDGLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDG 60
Query: 73 SPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSF 132
P + E+L S N + SPAA ELE V++ L ++L P+
Sbjct: 61 HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA 120
Query: 133 LFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRL---VVYGSDQTHSALQKAA 189
G G T EA L L AAR++ E+ + S+ H + +KAA
Sbjct: 121 S-----GTFTSGGT-EANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174
Query: 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL 249
+ G+ + + T + + ++L+ AID + G++ T GTT ++D +
Sbjct: 175 RYLGLGLRRVPTVPTD----YRIDVDALEEAIDENTIGGVV----VGTAGTTDTGSIDDI 226
Query: 250 GPLCDIAKRYSIWVHVDAAYAGSACICPEFRH-FIDGIEGADSFSLNAHKWFFTTLDCCC 308
L DIA+ Y IW+HVDAA+ G E + G+EG DS +++ HK+ + C
Sbjct: 227 EELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGV 286
Query: 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVAN 368
+ ++ AL + L +L + ++ R +AL L+ LR G
Sbjct: 287 VLFRDEEALRRILIFADYYLP-----GGGIPNFTILGSRPGR--QALALYANLRRLGREG 339
Query: 369 LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428
R L + +A+ E + FE+V +V FR+ L D +E +
Sbjct: 340 YRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLAD--LSERLDRRG 397
Query: 429 RKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRH------VIAAWKVVQEKLDGI 482
++ + G V V G ++F V L DR + + +++ L+G
Sbjct: 398 WQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDREESLLALIEEPGREIEDLLEGT 457
Query: 483 LA 484
Sbjct: 458 FG 459
|
Length = 460 |
| >gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-20
Identities = 122/476 (25%), Positives = 200/476 (42%), Gaps = 77/476 (16%)
Query: 15 DFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSP 74
F+ ++ +EK LS++E + +PE + E + +L + H V H SP
Sbjct: 37 GFLQEHIVAIEK--PLSEIEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSV----HTASP 90
Query: 75 YYFAYFPSSGSIAGFLGEMLSSGFNVVGFNW-----MSSPAATELENIVMDWLGEMLKL- 128
+ + S+ + F ML +V N +S A T LE V LG M L
Sbjct: 91 SFIGHMTSA--LPYF---MLPLSKLMVALNQNLVKIETSKAFTPLERQV---LGMMHHLV 142
Query: 129 --------------PKSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL------NEIGRE 168
L + GG + A + L AR+++L + RE
Sbjct: 143 YGQDDDFYRKWMHSADHSLGAFCSGGTV------ANITALWVARNRLLKADGDFKGVARE 196
Query: 169 NISR-LVVYG--------SDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQA 219
+ L YG S++ H +L KAA + GI N AIKT ++ + ++L+
Sbjct: 197 GLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNR--IDVDALRD 254
Query: 220 AIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEF 279
+ + PL + GTT +DPL + DIA+ HVDAA+ G+ + +
Sbjct: 255 KCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTY 314
Query: 280 RHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339
RH + GIE ADS +++AHK + + + K+P AL+ A+ + E++ K S
Sbjct: 315 RHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDP-ALMSAIEHHAEYILRKGS------ 367
Query: 340 DYKDW-QITL--SRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396
KD TL SR A+ ++ L G + + A+ F +L+ FE+V
Sbjct: 368 --KDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELV 425
Query: 397 APRNFAVVCFRVLPS----ASGLGDGKANEGANELNRKLLESIN----ASGQLYVS 444
++ +R +P A D + E NEL +L + I +G+ +VS
Sbjct: 426 TEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVS 481
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 39/268 (14%)
Query: 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168
P ++E V+ LG +L LP ++ G ++ G T EA + + AA++ L +
Sbjct: 55 PGTKKIEEEVVGSLGNLLHLPDAY------GYIVSGGT-EANIQAVRAAKN--LAREEKR 105
Query: 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228
++V S H + +KAA++ G++ +T+ + ++ ID D G
Sbjct: 106 T-PNIIVPES--AHFSFEKAAEMLGLEL-----RYAPLDEDYTVDVKDVEDLID-DNTIG 156
Query: 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS----ACICPEFRHFID 284
++ GTT + +D + L IA I++HVDAA+ G F
Sbjct: 157 IV-----GIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDF 211
Query: 285 GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344
+ G S +++ HK + + + ++ + L K LS + +L + KQ
Sbjct: 212 SLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYL----TVKKQAT----- 261
Query: 345 QITLSRR-FRALKLWLVLRSFGVANLRN 371
IT +R A + V++ G R
Sbjct: 262 -ITGTRSGASAAATYAVIKYLGREGYRK 288
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168
P +LE ++ LGE+L LP ++ G + G T EA + + AAR+ L + +
Sbjct: 55 PGTAKLEEEAVEMLGELLHLPDAY------GYITSGGT-EANIQAVRAARN--LAKAEKP 105
Query: 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228
NI VV S H + KAA + G+ R + + ++++ ID + G
Sbjct: 106 NI---VVPES--AHFSFDKAADMLGV---ELRRAPLDDD--YRVDVKAVEDLIDDNT-IG 154
Query: 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID---G 285
++ GTT + VDP+ L IA I++HVDAA+ G + P +
Sbjct: 155 IV-----GIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGG--FVIPFLDDPPNFDFS 207
Query: 286 IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFL 328
+ G DS +++ HK + + ++ + + AL+ + +L
Sbjct: 208 LPGVDSITIDPHKMGLAPIPAGGILFRDE-SYLDALAVDTPYL 249
|
Length = 371 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 11/129 (8%)
Query: 172 RLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231
V+ ++ S AA++AG P + +L +A
Sbjct: 42 DEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG------GLDVAILEEL--KAKPNV 93
Query: 232 LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADS 291
+ T TT+ + PL + IAK Y I + VDAA AG A P GAD
Sbjct: 94 ALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL---IPEGGADV 150
Query: 292 FSLNAHKWF 300
+ + HK
Sbjct: 151 VTFSLHKNL 159
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 74/311 (23%), Positives = 128/311 (41%), Gaps = 55/311 (17%)
Query: 90 LGEMLSSGFNVVGFNWMSSP----AATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGT 145
L S N G + S + + E VM++ E+ K+P F+ + G + G
Sbjct: 39 LKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKIP----FNESWGYITNGG 93
Query: 146 TCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT 205
T E L AR+ + +Y S TH ++ K A++ I R I +
Sbjct: 94 T-EGNLYGCYLARELFPDGT---------LYYSKDTHYSVSKIARLLRIK---SRVITSL 140
Query: 206 KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSI---W 262
+ + L + I + P + A +GTT +D + + +I K+ I +
Sbjct: 141 PNGEIDY--DDLISKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYY 195
Query: 263 VHVDAAYAGSACICPEFRH-----FIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNAL 317
+H DAA +G I P + F DGI DS +++ HK+ + + C + K
Sbjct: 196 IHADAALSGM--ILPFVNNPPPFSFADGI---DSIAISGHKFIGSPMPCGIVLAKKKY-- 248
Query: 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSH 376
++ +S + +++ ++ D I+ SR AL LW +RS G LR ++
Sbjct: 249 VERISVDVDYIGSR-----------DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHC 297
Query: 377 VRMAQ-LFQEL 386
+ MAQ L
Sbjct: 298 LDMAQYAVDRL 308
|
Length = 380 |
| >gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 39/233 (16%)
Query: 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLD 224
+GRE ++Y S ++H ++ KAA++ ++ P ID D
Sbjct: 104 VGREVFPDGILYASRESHYSVFKAARMYRMEAVK--------------VPTLPSGEIDYD 149
Query: 225 -IQAGLI-----PLFLCATVGTTAITTVDPLGPLCDIAKRYSI-----WVHVDAAYAGSA 273
++ L P L +GTT VD L + I K ++H D A G
Sbjct: 150 DLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLM 209
Query: 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333
+ + S S++ HK+ + C + + +KALS N E+L +
Sbjct: 210 MPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLNS--- 264
Query: 334 DSKQVVDYKDWQITLSRRFRA-LKLWLVLRSFGVANLRNFLRSHVRMAQLFQE 385
+D I SR A L LW LR G ++ ++ +R A ++
Sbjct: 265 --------RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKD 309
|
Length = 374 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 174 VVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLF 233
+ T+ + + ++AG + + S+ F L ++L+AA+ + G +
Sbjct: 92 AILVPAPTYPSYIRIFRLAGGEVVRYP---LYSSNDFHLDFDALEAALK-EATEGNKVVL 147
Query: 234 LCATVG--TTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271
+ T + T++ L L D+AK ++I + VD AYAG
Sbjct: 148 HT-SPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAG 186
|
Length = 357 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 486 | |||
| PLN02590 | 539 | probable tyrosine decarboxylase | 100.0 | |
| PLN02880 | 490 | tyrosine decarboxylase | 100.0 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 100.0 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 100.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 100.0 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 100.0 | |
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 100.0 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 100.0 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 100.0 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 100.0 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.97 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.97 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.97 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.97 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.97 | |
| PLN02651 | 364 | cysteine desulfurase | 99.97 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.97 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.97 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.96 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.96 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.96 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.96 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.96 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.96 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.95 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.95 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.95 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.95 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.95 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.95 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.95 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.94 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.94 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.93 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.93 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.93 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.92 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.92 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.92 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.91 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.91 | |
| PLN02721 | 353 | threonine aldolase | 99.91 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.91 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.91 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.91 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.9 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.9 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.9 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.9 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.89 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.89 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.89 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.89 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.89 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.89 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.89 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.89 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.88 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.88 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.88 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.88 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.88 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.88 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.88 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.88 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.88 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.87 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.87 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.87 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.87 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.87 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.87 | |
| PRK07324 | 373 | transaminase; Validated | 99.87 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.87 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.87 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.86 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.86 | |
| PLN02656 | 409 | tyrosine transaminase | 99.86 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.86 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.86 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.86 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.86 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.86 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.86 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.86 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.86 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.85 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.85 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.85 | |
| PLN02231 | 534 | alanine transaminase | 99.85 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.85 | |
| PLN02187 | 462 | rooty/superroot1 | 99.85 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.85 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.85 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.85 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.85 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.85 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.85 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.84 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.84 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.84 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.84 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.84 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.84 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.84 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.84 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.84 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.84 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.84 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.83 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.83 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.83 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.83 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.83 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.83 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.83 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.83 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.83 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.83 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.83 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.83 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.83 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.83 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.82 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.82 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.82 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.82 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.82 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.82 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.82 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.82 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.81 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.81 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.81 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.81 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.81 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.81 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.81 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.81 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.8 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.8 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.8 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.8 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.8 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.8 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.8 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.8 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.8 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.8 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.8 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.8 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.8 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.8 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.8 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.79 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.79 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.79 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.79 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.79 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.79 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.79 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.79 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.79 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.79 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.78 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.78 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.78 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.78 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.78 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.78 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.77 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.77 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.77 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.77 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.77 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.77 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.77 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.77 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.77 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.77 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.77 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.77 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.77 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.77 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.76 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.76 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.76 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.76 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.76 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.76 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.76 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.76 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.75 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.75 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.75 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.75 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.75 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.75 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.74 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.74 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.74 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.74 | |
| PLN02368 | 407 | alanine transaminase | 99.74 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.73 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.73 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.73 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.73 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.73 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.73 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.73 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.73 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.73 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.72 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.72 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.72 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.72 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.72 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.72 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.72 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.71 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.71 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.71 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.71 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.7 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.7 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.7 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.7 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.69 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.69 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.69 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.69 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.68 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.68 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.68 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.68 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.67 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.67 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.67 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.67 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.67 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.67 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.67 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.66 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.66 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.66 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.65 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.65 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.65 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.64 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.64 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.64 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.64 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.62 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.62 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.61 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.61 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.61 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.6 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.6 | |
| PLN02397 | 423 | aspartate transaminase | 99.59 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.59 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.59 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.59 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.58 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.58 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.57 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.57 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.56 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.56 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.55 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.54 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.54 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.53 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.53 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.53 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.53 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 99.52 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.52 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.52 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.52 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.51 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.5 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.5 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.5 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.5 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.49 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.49 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.48 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.48 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.47 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.47 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.47 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.47 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.46 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.46 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.46 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.46 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.46 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.46 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.46 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.45 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.45 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.45 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.44 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.43 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.42 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.42 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.42 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.42 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.42 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.4 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.4 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.4 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.4 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.39 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.39 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.38 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.38 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.38 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.38 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.37 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.37 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.37 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.36 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.36 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.34 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.34 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.34 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.34 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.27 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.24 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.24 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.21 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.17 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.14 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.12 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.11 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 98.92 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.9 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.87 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.85 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.85 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.79 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.72 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 98.67 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.45 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.35 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 98.2 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 97.88 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.65 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.11 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 96.92 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 96.39 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 94.6 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 92.57 |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-92 Score=718.66 Aligned_cols=479 Identities=57% Similarity=1.056 Sum_probs=446.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCc
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEK----YPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYY 76 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~ 76 (486)
|++++||++++++++.+.+|++++++ +||.+.++|++++..++..+|++|.+.+++++++.+.+.++..+|+||+|
T Consensus 54 m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f 133 (539)
T PLN02590 54 MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPSY 133 (539)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCCe
Confidence 78999999999999999999999887 79999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHH
Q 038818 77 FAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAA 156 (486)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~ 156 (486)
+||++++++++++++|++++.+|++...|..+|.++++|+++++|+++++|+|+.+...+.++|++|+|||+||++||.+
T Consensus 134 ~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~a 213 (539)
T PLN02590 134 FAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLA 213 (539)
T ss_pred eEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999864322346899999999999999999
Q ss_pred HHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEe
Q 038818 157 ARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236 (486)
Q Consensus 157 a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~ 236 (486)
||++..+..+..+.++.+||+|+.+|||+.|+|+++|+|.++++.||+|..++++||+++|+++|++++++|.+|++|++
T Consensus 214 AR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~Vva 293 (539)
T PLN02590 214 ARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICA 293 (539)
T ss_pred HHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99988766666667889999999999999999999999999999999986557899999999999999999999999999
Q ss_pred ecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 237 ~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
|+|||.+|++|||++|+++|++||+||||||||||++++++++++++.|++.|||+++|+|||+++|++||++++|++..
T Consensus 294 TaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~ 373 (539)
T PLN02590 294 TVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYS 373 (539)
T ss_pred EeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 317 LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
+.+++...++|+...........++.+|++++|||++++++|++|+.+|.+|+++++++++++|++|.+.|++.|+|+++
T Consensus 374 l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~ 453 (539)
T PLN02590 374 LIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVV 453 (539)
T ss_pred HHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 88889999999965433334467899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 397 APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 397 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+|.+++|||++.+... .++..+++|++|.+++.++|.++++++.++|+.+||+|++||.|+++||+.+++.|.
T Consensus 454 ~~~~l~iVcFr~~~~~~------~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~ 527 (539)
T PLN02590 454 TTRYFSLVCFRLAPVDG------DEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQ 527 (539)
T ss_pred cCCceEEEEEEecCCCC------CHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999987421 133458899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 038818 477 EKLDGILAT 485 (486)
Q Consensus 477 ~~~~~l~~~ 485 (486)
+.++++.+.
T Consensus 528 ~~a~~~~~~ 536 (539)
T PLN02590 528 KHASKFTRN 536 (539)
T ss_pred HHHHHhccc
Confidence 999887653
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-88 Score=687.93 Aligned_cols=480 Identities=60% Similarity=1.109 Sum_probs=445.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceec
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~ 80 (486)
||+++||+.++++++.+.+|++++.++||.+..+|++++..++..+|++|.+.+++++++.+.+.++..+|+||+|+||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~ 89 (490)
T PLN02880 10 MDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAYY 89 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHH
Q 038818 81 PSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQ 160 (486)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~ 160 (486)
++++.++++++|++.+.+|+++..|..+|.++++|+++++|+++++|+|+.+..++.++|++|+|||+||++||.+||++
T Consensus 90 ~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~ 169 (490)
T PLN02880 90 PSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDR 169 (490)
T ss_pred cCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998653333468999999999999999999998
Q ss_pred HHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCC
Q 038818 161 ILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240 (486)
Q Consensus 161 ~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gt 240 (486)
..+..+..+.++.+||+|+.+|||+.|+|+++|+|.++++.||+|.+++++||+++|+++|++++++|.+|++|++|+||
T Consensus 170 ~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGT 249 (490)
T PLN02880 170 VLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGT 249 (490)
T ss_pred HHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCC
Confidence 87766666667889999999999999999999999989999999865678999999999999999999999999999999
Q ss_pred ccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHH
Q 038818 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 241 t~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~ 320 (486)
|.+|++|||++|+++|++||+|+||||||||++++++++++.+.++++|||+++|+|||+++|++||++++|+...+...
T Consensus 250 T~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~ 329 (490)
T PLN02880 250 TSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQS 329 (490)
T ss_pred CcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777778
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
+...++|+.....+.....++.++++++|||++++++|++++.+|.+|+++++++++++++++.+.|++.|+++++.++.
T Consensus 330 ~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~ 409 (490)
T PLN02880 330 LSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRI 409 (490)
T ss_pred HccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 88889998764333344677888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+++|||++.+... ..+..+++|+++.++|.++|.++++.+.+.|+.++|+|++||+|+++||+.+++.|.++++
T Consensus 410 ~~iv~Fr~~~~~~------~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~ 483 (490)
T PLN02880 410 FSLVCFRLVPPKN------NEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEAS 483 (490)
T ss_pred eEEEEEEEeCCCC------ChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999986421 1344578899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 038818 481 GILATS 486 (486)
Q Consensus 481 ~l~~~~ 486 (486)
++..+|
T Consensus 484 ~~~~~~ 489 (490)
T PLN02880 484 KLLGKS 489 (490)
T ss_pred HHHHhc
Confidence 887664
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-83 Score=605.11 Aligned_cols=463 Identities=50% Similarity=0.900 Sum_probs=441.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceec
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~ 80 (486)
|+.++||+.+.++||.|.||+++++++||.|.++|++++.+++.+.|+.|+++++|++++++.++|+++||+||+|++|+
T Consensus 1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyf 80 (511)
T KOG0628|consen 1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYF 80 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCcc--CCCcceEEcCCchHHHHHHHHHHH
Q 038818 81 PSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~--~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
|++.+++++++|++...++.-++.|..+|..++||..+.+|+++++++|..|.. .+.++|++.+++|++++.++.+||
T Consensus 81 pa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR 160 (511)
T KOG0628|consen 81 PAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAAR 160 (511)
T ss_pred cCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998754 358899999999999999999999
Q ss_pred HHHHHHcccc--------CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 159 DQILNEIGRE--------NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 159 ~~~~~~~~~~--------~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
...+.+.+.. -..+.|+|+|+++|.|++|+|.+.|+ +++.+|+|+ ++.|+.+.|+++|+++.++|.+
T Consensus 161 ~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~V---klR~l~td~--n~~mr~~~L~~AIe~D~arGlI 235 (511)
T KOG0628|consen 161 TEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGV---KLRALPTDE--NFGMRGDTLRKAIEEDIARGLI 235 (511)
T ss_pred HHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcce---eEEEeeccc--CcCCCHHHHHHHHHHHHhCCCc
Confidence 9887765432 23689999999999999999999999 999999986 8999999999999999999999
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
|++|++|.|||.+.++|+|.+|+.+|+++|+||||||||+|.+..||+++.+++|++.|||+.+++|||+.+-..|+.+|
T Consensus 236 Pf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lW 315 (511)
T KOG0628|consen 236 PFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLW 315 (511)
T ss_pred cEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
+|+...+.+++...|-|+..... +...++..|.+..||||+++++|..++.+|.+++++.+++..++++.+.+.+.+.
T Consensus 316 vkd~~~~~~~~~vdp~yL~h~~~--~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d 393 (511)
T KOG0628|consen 316 VKDGTKLSRAFNVDPLYLKHAYQ--GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRAD 393 (511)
T ss_pred eecCceeeeeeecChHhhcchhh--ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99998888899999999987654 3378899999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHH
Q 038818 391 NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~ 470 (486)
+.|++.++.-++.||||..+. |+.|++|.++++.+|.+.+.+..+.|+.+||++++++.|+++||++
T Consensus 394 ~~FE~~~~~~lgLvcFRlk~~-------------N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~ 460 (511)
T KOG0628|consen 394 PRFEIVNKRILGLVCFRLKGD-------------NEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDE 460 (511)
T ss_pred CcceeecccccceeEEeecCC-------------cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHH
Confidence 999999999999999999876 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 038818 471 AWKVVQEKLDGIL 483 (486)
Q Consensus 471 ~i~~l~~~~~~l~ 483 (486)
.++.|.+.++.+.
T Consensus 461 a~~~I~~~a~~l~ 473 (511)
T KOG0628|consen 461 AWKIIFEAADELF 473 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-72 Score=569.56 Aligned_cols=459 Identities=23% Similarity=0.338 Sum_probs=387.0
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCC
Q 038818 5 EFRRQGHMIIDFIADYYRD--VEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPS 82 (486)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~ 82 (486)
.+.+..+++.+.+++|+.+ ....|+.+.+.+... ...+|++|.+.+++++++.+.+.++..+|+||+|+||+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~~ 98 (522)
T TIGR03799 23 TLGRIEQKISQNLAGFLQEHIVAIEKPLSEIEKDFS----SAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMTS 98 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhccc----ccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEeccC
Confidence 4666677777777777766 334466666544432 5678999999999999999999999999999999999998
Q ss_pred C-CCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCC-CC----c-cCCCcceEEcCCchHHHHHHHH
Q 038818 83 S-GSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPK-SF----L-FSGTGGGVIQGTTCEAILCTLA 155 (486)
Q Consensus 83 ~-~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~-~~----~-~~~~~~~~~t~ggt~a~~~al~ 155 (486)
+ +.....+++ +.+.+|+|...|+.||.++++|+++++|++++++..+ .+ . ..+.++|++|+|||+||++||+
T Consensus 99 ~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~ 177 (522)
T TIGR03799 99 ALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALW 177 (522)
T ss_pred CCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHH
Confidence 6 344444677 6668999999999999999999999999999996322 11 1 1123579999999999999999
Q ss_pred HHHHHHHHHcc------cc---------CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHH
Q 038818 156 AARDQILNEIG------RE---------NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAA 220 (486)
Q Consensus 156 ~a~~~~~~~~~------~~---------~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~ 220 (486)
+||++.++..+ .+ +.++.+||+|+.+|+|+.|+++++|+|.++++.||+|+ +++||+++|+++
T Consensus 178 ~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~ 255 (522)
T TIGR03799 178 VARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDK 255 (522)
T ss_pred HHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHH
Confidence 99998754321 11 23578999999999999999999999988999999986 679999999999
Q ss_pred HHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeecccccc
Q 038818 221 IDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300 (486)
Q Consensus 221 l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l 300 (486)
|+++.++|.+|++|++++|+|.+|++|||++|+++|+++|+|+|||||||++.++++++++++.+++++||+++|+|||+
T Consensus 256 i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l 335 (522)
T TIGR03799 256 CAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQL 335 (522)
T ss_pred HHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcC
Confidence 99988889899999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHH
Q 038818 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMA 380 (486)
Q Consensus 301 ~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a 380 (486)
++|++||++++|++..+ +.+...++|+.... ..++.++++++||++.++++|++++.+|.+|+++++++..+++
T Consensus 336 ~~P~g~G~llvr~~~~~-~~~~~~~~Yl~~~~-----~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la 409 (522)
T TIGR03799 336 YVPMGAGMVLFKDPALM-SAIEHHAEYILRKG-----SKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKA 409 (522)
T ss_pred CcCcccEEEEEeCHHHH-HHhccCcchhcCCC-----CCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999998764 46777788875421 2456778999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCC----CC----CCccchHHHHHHHHHHHHhcCcEEEeeeeEC---
Q 038818 381 QLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLG----DG----KANEGANELNRKLLESINASGQLYVSHGMVA--- 449 (486)
Q Consensus 381 ~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~----~~----~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--- 449 (486)
++|.+.|++.|+|+++.+|.+++|||++.|...+.. ++ ...+..+++|+++.+++.++|.++++.+.+.
T Consensus 410 ~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~ 489 (522)
T TIGR03799 410 KYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQ 489 (522)
T ss_pred HHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccc
Confidence 999999999999999999999999999987542110 00 0012357889999999999999999988765
Q ss_pred ----CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 450 ----GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 450 ----~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
+..+||++++||.||++||+.+++.=+
T Consensus 490 ~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~ 520 (522)
T TIGR03799 490 YDHQPTVVFRVVLANPLTTHEILQDILDEQR 520 (522)
T ss_pred cCCCCcEEEEEEecCCCCCHHHHHHHHHHhh
Confidence 347899999999999999999887543
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-73 Score=561.50 Aligned_cols=370 Identities=41% Similarity=0.737 Sum_probs=331.4
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHH
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATEL 114 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l 114 (486)
|++|++.++..+|++|.+.++|++++++.+.++..+|+||+|++|++++++++++++++++..+|+|...|+.+|.++++
T Consensus 1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~ 80 (373)
T PF00282_consen 1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI 80 (373)
T ss_dssp TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC---CCCeEEEecCCCchHHHHHHHH
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN---ISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~---~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
|+++++|+++++|+|.++.....++|++|+|||+||++|+++||++..++.+..+ .++++||+|+.+|||+.|+|.+
T Consensus 81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~ 160 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARI 160 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHH
T ss_pred hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcce
Confidence 9999999999999996543333468999999999999999999999876654444 4689999999999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
+|+ .++.||+|+ +++||+++|+++|+++.++|..|++|++++|||.+|++|||++|+++|++|++|+||||||||
T Consensus 161 lGl---g~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg 235 (373)
T PF00282_consen 161 LGL---GVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGG 235 (373)
T ss_dssp TTS---EEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGG
T ss_pred eee---EEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccc
Confidence 999 699999996 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
.++++|.+++...+++.||||++|+|||+++|++||++++|++..+...+...+.|+.....+.....++.++++++||+
T Consensus 236 ~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~ 315 (373)
T PF00282_consen 236 SALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRR 315 (373)
T ss_dssp GGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGH
T ss_pred cccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhccccccccccccccccccccccc
Confidence 98899999999999999999999999999999999999999999888888888999986544445667788999999999
Q ss_pred CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEee
Q 038818 352 FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVL 409 (486)
Q Consensus 352 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~ 409 (486)
+.++++|++|+.+|.+|+++++++..+++++|++.|++.++|+++.+|.+++|||++.
T Consensus 316 ~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 316 FRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred chHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999984
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-73 Score=527.48 Aligned_cols=469 Identities=21% Similarity=0.336 Sum_probs=423.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCC
Q 038818 5 EFRRQGHMIIDFIADYYRDV--EKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPS 82 (486)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~ 82 (486)
..+..+.++++.+.+|...- ++..+.+.+.|++|+..++..+|+++.++++|++++++.+. ......||+|++...+
T Consensus 32 ~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~tl~-y~vKTgHprffNQl~~ 110 (510)
T KOG0629|consen 32 VTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRDTLK-YSVKTGHPRFFNQLSS 110 (510)
T ss_pred hhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHHHHH-hhhccCCCcchhhhcc
Confidence 34677899999999995543 33578999999999999999999999999999999998764 4456689999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 83 SGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 83 ~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
+.++.+..++++++..|.|...|+.+|.+..+|.++...+.++.||+.. ++|+|++||+.+|++|+.+||.+.+
T Consensus 111 glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~------~DgIf~pggsisn~Ya~~~Aryk~~ 184 (510)
T KOG0629|consen 111 GLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG------GDGIFAPGGSISNMYAMNCARYKNF 184 (510)
T ss_pred CCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC------CCceecCCchhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999875 3899999999999999999999877
Q ss_pred HH---ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecC
Q 038818 163 NE---IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVG 239 (486)
Q Consensus 163 ~~---~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g 239 (486)
++ .|..+.|..++|+|+.+|||+.|++..+|+|+++++.|++|+ .|.|++++||+.|-+..++|..|++|.+|+|
T Consensus 185 Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e--~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaG 262 (510)
T KOG0629|consen 185 PEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDE--RGKMIPDDLEKKILEAKAKGGVPFFVNATAG 262 (510)
T ss_pred chhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccc--cCccchHHHHHHHHHHHhcCCCCeEEEecCC
Confidence 65 355567999999999999999999999999999999999997 6799999999999999999999999999999
Q ss_pred CccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHH
Q 038818 240 TTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIK 319 (486)
Q Consensus 240 tt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~ 319 (486)
||..|++|||..|+++|++|++|+||||||||+++.+..+|+++.|+++|||+++++||++++|..||.+++|.+..+.+
T Consensus 263 TTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~ 342 (510)
T KOG0629|consen 263 TTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQR 342 (510)
T ss_pred ceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP- 398 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~- 398 (486)
..+..+.|+++....+...+|.++..++|||+...+++|..|++-|..|+++.++++.++|+||.++|++.++++.+..
T Consensus 343 Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~ 422 (510)
T KOG0629|consen 343 CNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFEL 422 (510)
T ss_pred hcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcC
Confidence 8899999999887666677888999999999999999999999999999999999999999999999999999887654
Q ss_pred -CCeeEEEEEeecCCCCCCCC--CCccchHHHHHHHHHHHHhcCcEEEeeeeECC-EeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 -RNFAVVCFRVLPSASGLGDG--KANEGANELNRKLLESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 -~~~~~v~f~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
|+...|||++.|+..|.... +.......++-.+.+.|.++|...++..++.. ..++|+.+.|+..+++|+|.+++.
T Consensus 423 ~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldE 502 (510)
T KOG0629|consen 423 EPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDE 502 (510)
T ss_pred CCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHH
Confidence 67788999999887654332 11234455666788899999998888776643 669999999999999999999999
Q ss_pred HHHHHHHH
Q 038818 475 VQEKLDGI 482 (486)
Q Consensus 475 l~~~~~~l 482 (486)
|.++.+.|
T Consensus 503 Ierlgq~l 510 (510)
T KOG0629|consen 503 IERLGQDL 510 (510)
T ss_pred HHHhccCC
Confidence 99887643
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=539.02 Aligned_cols=460 Identities=17% Similarity=0.230 Sum_probs=382.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCC-Cccee
Q 038818 2 DSEEFRRQGHMIIDFIADYYRDVEKYPVL-SQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSP-YYFAY 79 (486)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p-~~~~~ 79 (486)
|.+.|++++.++++.+.+|+++.. |-- +.++|+.++. ..+++...+.+++++++.+.+.++..+|+|| +|+||
T Consensus 15 n~~~~~~~~~~~~~~~~~~r~~~~--p~d~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry~gh 89 (608)
T TIGR03811 15 NGQLYKDLLNKLVDEHLGWRQNYM--PQDKPVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESVPWHSAGRYWGH 89 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCCCCCCccceEEE
Confidence 467899999999999999999843 321 3466666554 3455566689999999999999999999999 99999
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHH
Q 038818 80 FPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARD 159 (486)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~ 159 (486)
+++++.+|+++++++...+|+|...|+.||.++.+|+++.+|+++++|++.. +|++|+|||+||+.||++||+
T Consensus 90 m~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~-------~G~~TsGGT~ANl~aL~~AR~ 162 (608)
T TIGR03811 90 MNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNG-------WGHIVADGSLANLEGLWYARN 162 (608)
T ss_pred CcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCC-------CeEEeCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875 689999999999999999998
Q ss_pred HHH-----HHcc---------c--------------------------------cCCCC-eEEEecCCCchHHHHHHHHc
Q 038818 160 QIL-----NEIG---------R--------------------------------ENISR-LVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 160 ~~~-----~~~~---------~--------------------------------~~~~~-~~v~~s~~~H~s~~~a~~~~ 192 (486)
.+. +... + ....+ .++++|+.+|||+.|++.++
T Consensus 163 ~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il 242 (608)
T TIGR03811 163 IKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII 242 (608)
T ss_pred hhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc
Confidence 641 1100 0 00112 27999999999999999999
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHH---HHhCc--eEEeec
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIA---KRYSI--WVHVDA 267 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~---~~~g~--~lhvD~ 267 (486)
|+|.++++.||+|+ +++||+++|+++|+++.++|.+|++||+|+|||.+|+||||++|+++| +++|+ |+||||
T Consensus 243 GlG~~~vv~VpvD~--~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDA 320 (608)
T TIGR03811 243 GIGLDQVIPVPVDS--NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDA 320 (608)
T ss_pred CCCcccEEEeecCC--CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeec
Confidence 99999999999985 679999999999999999999999999999999999999999999999 67897 699999
Q ss_pred cccchh--ccC------------------------------ccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 268 AYAGSA--CIC------------------------------PEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 268 a~g~~~--~~~------------------------------~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
||||++ +++ +++++.+++++.||||++|+|||+++|++||++++|++.
T Consensus 321 AyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~ 400 (608)
T TIGR03811 321 AYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIR 400 (608)
T ss_pred cccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHH
Confidence 999964 222 345677889999999999999999999999999999996
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhC---
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGG--- 389 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~--- 389 (486)
+.+.+...++|+.....+ .....+.++++++|+ +.++++|++++.+ |.+||++++++++++++++.+.|++
T Consensus 401 -~~~~~~~~a~Yl~~~~~~--~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~ 477 (608)
T TIGR03811 401 -MRDVISYFATYVFEKGAD--IPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEF 477 (608)
T ss_pred -HHHHHhcCcchhcccccc--CcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778889999753211 112456788899986 5689999999998 9999999999999999999999988
Q ss_pred ---CCCeEE--ecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCc-----EEEeeeeE----------
Q 038818 390 ---DNRFEI--VAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQ-----LYVSHGMV---------- 448 (486)
Q Consensus 390 ---~~~~~~--~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~-----~~~~~~~~---------- 448 (486)
.+.+++ +.+|++++|||++.+.+. .+.+..|++|+++++++. ..|. ++++.|.+
T Consensus 478 ~~~~~~~el~~~~~pdlniV~Fr~~~~g~-----~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~ 552 (608)
T TIGR03811 478 KVGDKEIEVHPLTKPDFNMVDYVFNEKGN-----DDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPF 552 (608)
T ss_pred ccCCCCeeEEecCCCCcceEEEEEecCCC-----ccHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHH
Confidence 456776 778999999999987541 112557899999999875 2222 34555533
Q ss_pred ----------------CCEeEEEEEecCCCCcH-HHHHHHHHHHHHHHHHHh
Q 038818 449 ----------------AGIYFIRFAVGATLTED-RHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 449 ----------------~~~~~lR~~~~~~~tt~-~did~~i~~l~~~~~~l~ 483 (486)
.+..+||.++|+|..++ +.++.+++.|+++..+.+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~~~ 604 (608)
T TIGR03811 553 AFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQEKL 604 (608)
T ss_pred HHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHHHH
Confidence 13568999999998877 667888888888776554
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=461.16 Aligned_cols=441 Identities=24% Similarity=0.308 Sum_probs=355.5
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhc-CCCcCCCCCCcceecCCCCCHHHHHHHHH
Q 038818 16 FIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIV-PGITHWQSPYYFAYFPSSGSIAGFLGEML 94 (486)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~l 94 (486)
.+.+++...+.++..+..+|-.-.......+|+.|.+.++++.++..... +....+.||++..+..+.+.++.++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~ 82 (460)
T COG0076 3 GLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELL 82 (460)
T ss_pred hHHHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHH
Confidence 34445555555555556566655566677899999999999999999844 55555569999999999999999999999
Q ss_pred HhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc-C--CC
Q 038818 95 SSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE-N--IS 171 (486)
Q Consensus 95 ~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~-~--~~ 171 (486)
..++|+|...|+.+|.+.++|+++++|+++|+|++..+ .|.+|+|||+||++|+.++|+++.+..+.+ + ..
T Consensus 83 ~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~------~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~ 156 (460)
T COG0076 83 VSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA------SGTFTSGGTEANLLALLAARERWRKRALAESGKPGG 156 (460)
T ss_pred HHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCC------ceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 99999999999999999999999999999999998654 899999999999999999999987543221 1 13
Q ss_pred CeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchH
Q 038818 172 RLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGP 251 (486)
Q Consensus 172 ~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~ 251 (486)
.++|++|..+|+|+.|+++++|+ .++.+|+++. +++||+++|+++|++++..| +||+++|||++|.+|||++
T Consensus 157 ~P~ii~s~~aH~s~~Kaa~~lG~---~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ 228 (460)
T COG0076 157 KPNIVCSETAHFSFEKAARYLGL---GLRRVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEE 228 (460)
T ss_pred CCeEEecCcchhHHHHHHHHhCC---CceeEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHH
Confidence 56899999999999999999999 7778888764 68999999999999998765 6999999999999999999
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhh-hcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHF-IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~-~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
|++||++|++|+|||||+||+.+++.+.+.. ..++++||||++|+|||+++|++||++++||++.+.+.......|+..
T Consensus 229 ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~ 308 (460)
T COG0076 229 LADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPG 308 (460)
T ss_pred HHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCC
Confidence 9999999999999999999999988777776 678999999999999999999999999999997777666666666643
Q ss_pred ccCCCCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEee
Q 038818 331 KASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVL 409 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~ 409 (486)
. ...++++.++|.. .++++|+.++.+|.+||+++++++.+++++|+++|++.+.|+++++|.+++|||++.
T Consensus 309 ~--------~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~ 380 (460)
T COG0076 309 G--------GIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLK 380 (460)
T ss_pred C--------CcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcC
Confidence 1 2345677888886 689999999999999999999999999999999999998899999999999999994
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+... .........+..+..+......+|..++..+.+.++..+++...++.++.++ +.+...+....++
T Consensus 381 ~~~~--~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 449 (460)
T COG0076 381 DDED--TLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDRE-ESLLALIEEPGRE 449 (460)
T ss_pred Cccc--chhchHHHHHhcCceeecccCCccceeeeeeEEeeeeeehhhcchhhhhhhh-HHHHHHhhhhhhh
Confidence 4210 0000001111122223333344455455556666777888888887777766 6666666544433
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-57 Score=447.33 Aligned_cols=358 Identities=19% Similarity=0.244 Sum_probs=304.3
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCH-HHHHHHHHHhhcCCCccccccCh---hhHHHHHHHHHHHHHHcCC
Q 038818 53 IETILQDVQQHIVPGITHWQSPYYFAYFPSSGSI-AGFLGEMLSSGFNVVGFNWMSSP---AATELENIVMDWLGEMLKL 128 (486)
Q Consensus 53 ~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~~---~~~~le~~~~~~l~~l~g~ 128 (486)
++++|+++.+.+.++..+ |+|| |...++ ++.+++++...+|+-+..|..+| ...++|+++++|+++++|+
T Consensus 75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~ 148 (470)
T PLN02263 75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEI 148 (470)
T ss_pred HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCC
Confidence 588999999998876443 8999 666677 89999999999999889999988 6899999999999999999
Q ss_pred CC-CCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC
Q 038818 129 PK-SFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS 207 (486)
Q Consensus 129 ~~-~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~ 207 (486)
++ ++ +|++|+||||||++|+++||+.. ++.++|+|+.+|||+.|+++++|+ +++.||+++
T Consensus 149 p~~~~------~G~vtsGGTEaNL~Al~aARe~~---------~~~vvy~S~~aH~Sv~KAa~llgi---~~~~Vp~d~- 209 (470)
T PLN02263 149 EKNEY------WGYITNCGTEGNLHGILVGREVF---------PDGILYASRESHYSVFKAARMYRM---ECVKVDTLV- 209 (470)
T ss_pred CCCCC------eEEEeCcHHHHHHHHHHHHHhhc---------CCcEEEEcCCccHHHHHHHHhcCC---cceEeccCC-
Confidence 86 33 78999999999999999999963 566899999999999999999999 999999985
Q ss_pred CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCc-----eEEeeccccchhccCccchhh
Q 038818 208 SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSI-----WVHVDAAYAGSACICPEFRHF 282 (486)
Q Consensus 208 ~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~-----~lhvD~a~g~~~~~~~~~~~~ 282 (486)
+|+||+++|+++|.+++ .+|++|++|+|||++|++|||++|+++|+++|+ ||||||||||+++++.+....
T Consensus 210 -~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 210 -SGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred -CCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 67999999999998754 468999999999999999999999999999997 999999999988755433444
Q ss_pred hcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHH
Q 038818 283 IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVL 361 (486)
Q Consensus 283 ~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l 361 (486)
+.+...+|||++|+|||+++|++||++++|++. ...+...+.|+... +.++.+||++ .++++|+++
T Consensus 286 ~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~--~~~~~~~~~Yl~~~-----------d~ti~gSR~g~~al~lW~~L 352 (470)
T PLN02263 286 VTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASR-----------DATIMGSRNGHAPIFLWYTL 352 (470)
T ss_pred cCCCcCccEEEECCccccCCCcCEEEEEEehhh--HhhhccChHhhCCC-----------CCCcCCCCCcHHHHHHHHHH
Confidence 556667999999999999999999999999753 24677788898653 2378899997 479999999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE
Q 038818 362 RSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL 441 (486)
Q Consensus 362 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 441 (486)
+.+|.+|++++++++.++|+++.++|++. +++++.+|.+++|+|+.... + . ..+|+
T Consensus 353 ~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~~--------------~---~-----~~~gW- 408 (470)
T PLN02263 353 NRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPKD--------------E---E-----FVRRW- 408 (470)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCch--------------H---H-----hhcce-
Confidence 99999999999999999999999999998 78877788899999975321 1 1 12365
Q ss_pred EEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 442 YVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 442 ~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.++.. ...+|+++| |+.+++.||+|++.|++....
T Consensus 409 ~L~~~----~~~~Hivvm-phv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 409 QLACQ----GNIAHVVVM-PSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred EEccC----CCcEEEEEc-CCCCHHHHHHHHHHHHHHHhh
Confidence 23321 235999997 778888999999999987653
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=445.76 Aligned_cols=399 Identities=16% Similarity=0.202 Sum_probs=329.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHH
Q 038818 43 PESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWL 122 (486)
Q Consensus 43 ~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l 122 (486)
...+|++|.+.+++++++.+.+.. .+..||+|++|+.+++.+. +.+++..++|.|...+..+|..+++|+++++|+
T Consensus 14 ~~~~p~~~~~~~~~~~~~~~~iyl--d~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~l 89 (431)
T TIGR01788 14 KYRMPEEEMPPDAAYQLIHDELSL--DGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNML 89 (431)
T ss_pred cccCCCCCCCHHHHHHHHHHHhhh--cCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence 357899999999999999987642 4556899999998765554 578888888877777788888889999999999
Q ss_pred HHHcCCC-C--CCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC--CCCeEEEecCCCchHHHHHHHHcCCCCC
Q 038818 123 GEMLKLP-K--SFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--ISRLVVYGSDQTHSALQKAAQIAGIDPK 197 (486)
Q Consensus 123 ~~l~g~~-~--~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~--~~~~~v~~s~~~H~s~~~a~~~~G~g~~ 197 (486)
++++|++ . + ..|.+|+||||||++|+.++|.+...+...++ ..+.+||+|..+|+|+.|+++.+|+
T Consensus 90 a~llg~~~~~~~------~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~--- 160 (431)
T TIGR01788 90 ADLWHAPAKDAE------AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDV--- 160 (431)
T ss_pred HHHhCCCCCCCC------CeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCc---
Confidence 9999998 2 3 26778999999999999998864332211111 1356899999999999999999999
Q ss_pred CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh------CceEEeeccccc
Q 038818 198 NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY------SIWVHVDAAYAG 271 (486)
Q Consensus 198 ~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~------g~~lhvD~a~g~ 271 (486)
+++.||+|+ +.+++|+++|+++|+++ +++|++++++|.+|.+|||++|+++|+++ |+|+||||||+|
T Consensus 161 ~v~~i~~d~-~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g 233 (431)
T TIGR01788 161 ELREVPMDP-GRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGG 233 (431)
T ss_pred eeEEEecCC-CceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHH
Confidence 999999986 23699999999999865 46899999999999999999999999999 999999999998
Q ss_pred hhcc--CccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 272 SACI--CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 272 ~~~~--~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
++++ .++.+..+. ++++||+++|+|||+++|+|||++++|++..+...+...++|+... ..+++++++
T Consensus 234 ~~~p~~~~~~~~~~~-~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~---------~~~~t~~~s 303 (431)
T TIGR01788 234 FIAPFVYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGD---------EPTFTLNFS 303 (431)
T ss_pred HHHHHhCCCchhhcC-CCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCC---------CCCcceecC
Confidence 8753 344444444 6799999999999999999999999999865555666677787532 123578899
Q ss_pred CCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 350 RRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 350 r~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
|++ .++++|+.++.+|.+|++++++++.+++++|.++|++.|+|+++.+ +.+++|||++.+.. .. +..
T Consensus 304 R~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~--------~~--~~~ 373 (431)
T TIGR01788 304 RPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDA--------DP--GYT 373 (431)
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCC--------CC--CcC
Confidence 986 6789999999999999999999999999999999999999999987 78999999998632 00 122
Q ss_pred HHHHHHHHHhcCcEE---EeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLY---VSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~---~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++++.++|.++|+++ .+++.+++..++|++++ ++++++.++++++.|++++..+
T Consensus 374 ~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~-~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 374 LYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVR-EGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred HHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEec-CCCCHHHHHHHHHHHHHHHHhh
Confidence 567888888999863 45556788999999985 6777779999999999988765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=393.59 Aligned_cols=357 Identities=20% Similarity=0.232 Sum_probs=283.9
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccc---cChhhHHHHHHHHHHHHHHcCCC
Q 038818 53 IETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWM---SSPAATELENIVMDWLGEMLKLP 129 (486)
Q Consensus 53 ~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~---~~~~~~~le~~~~~~l~~l~g~~ 129 (486)
..++++.+.+.+.. .+..|+||.....--++.+..++....|+.+..+. .+..+.++|+++++|+++++|++
T Consensus 8 ~~~~~~~~~~~~~~-----~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~ 82 (374)
T PLN03032 8 MADILASYDKLLAE-----KSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 82 (374)
T ss_pred HHHHHHHHHHHHHH-----hhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 45677777766543 35678999876655556666666654443333333 34468999999999999999997
Q ss_pred CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCC
Q 038818 130 KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSS 209 (486)
Q Consensus 130 ~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~ 209 (486)
++. .+|+||+||||||++|+.++|+.. ++.+|++|..+|+|+.|+++++|+ .++.||+|+ +
T Consensus 83 ~~~-----~~G~fTsGGTEaNl~al~~ar~~~---------~~~~vi~s~~~H~Sv~kaa~~lg~---~~~~V~~d~--~ 143 (374)
T PLN03032 83 KDE-----YWGYITTCGTEGNLHGILVGREVF---------PDGILYASRESHYSVFKAARMYRM---EAVKVPTLP--S 143 (374)
T ss_pred Ccc-----CCEEEeCchHHHHHHHHHHHHHhC---------CCcEEEeCCCceeHHHHHHHHcCC---CCeEeeeCC--C
Confidence 641 258999999999999999998752 445899999999999999999999 889999986 6
Q ss_pred cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC-----ceEEeeccccchhccCccchhhhc
Q 038818 210 FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS-----IWVHVDAAYAGSACICPEFRHFID 284 (486)
Q Consensus 210 ~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g-----~~lhvD~a~g~~~~~~~~~~~~~~ 284 (486)
|+||+++|+++|++++ ..|++|++++|+|++|++||+++|+++|+++| +|+|||||+|++.+++......++
T Consensus 144 g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~ 220 (374)
T PLN03032 144 GEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVT 220 (374)
T ss_pred CcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccC
Confidence 7999999999998653 25788999999999999999999999999996 599999999998775432222233
Q ss_pred CCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHH
Q 038818 285 GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRS 363 (486)
Q Consensus 285 ~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~ 363 (486)
....+||+++|+|||+++|+|||++++|++.. +.+...++|+... ++++++||+ +.++++|++|+.
T Consensus 221 ~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~--~~~~~~~~Yl~~~-----------d~ti~gSR~g~~~l~~w~~l~~ 287 (374)
T PLN03032 221 FRKPIGSVSVSGHKFLGCPMPCGVALTRKKHV--KALSQNVEYLNSR-----------DATIMGSRNGHAPLYLWYTLRR 287 (374)
T ss_pred CCcCCcEEEECcccccCCCcCeEEEEEEchhh--HhhccCCcccCCC-----------CCcccCCCchHHHHHHHHHHHH
Confidence 33579999999999999999999999997543 3566678888542 358899997 578999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEE
Q 038818 364 FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYV 443 (486)
Q Consensus 364 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 443 (486)
+|.+|++++++++.++++++.+.|++. +++++.+|.+++|+|+.+.. + .+. +|+ .+
T Consensus 288 ~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~~-------------~----~~~-----~~w-~l 343 (374)
T PLN03032 288 KGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPMD-------------E----AFI-----KKW-QL 343 (374)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCCc-------------H----hHh-----hee-ee
Confidence 999999999999999999999999986 88888888889999986532 1 111 254 23
Q ss_pred eeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 444 SHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 444 ~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+.. +..+|+++| |+.+++.||+|++.|++.
T Consensus 344 ~~~----~~~~hi~vm-~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 344 ACE----GDIAHVVVM-PNVTVEKLDEFVEELVEV 373 (374)
T ss_pred ccc----CCEEEEEEC-CCCCHHHHHHHHHHHhcc
Confidence 321 237999998 788889999999998763
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=385.14 Aligned_cols=356 Identities=20% Similarity=0.265 Sum_probs=283.5
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCH-HHHHHHHHHhhcCCCccccccCh----hhHHHHHHHHHHHHHHcC
Q 038818 53 IETILQDVQQHIVPGITHWQSPYYFAYFPSSGSI-AGFLGEMLSSGFNVVGFNWMSSP----AATELENIVMDWLGEMLK 127 (486)
Q Consensus 53 ~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~~----~~~~le~~~~~~l~~l~g 127 (486)
..+.|+.+...+. .||+++.++|..... ++.+.+++....|+.+.. ...+ .+.++|+++++|+++++|
T Consensus 7 ~~~~~~~~~~~~~------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp-~~~~~~g~~~~~~e~~~~~~~a~l~g 79 (380)
T PRK02769 7 DQKEIEDFWLYLR------HNQYFNVGYPEAADFDYSALKRFFSFSINNCGDP-YSKSNYPLNSFDFERDVMNFFAELFK 79 (380)
T ss_pred HHHHHHHHHHHHH------HhhhcccCCCchhhcCHHHHHHHHHhhhccCCCc-cccCCCCCChHHHHHHHHHHHHHHhC
Confidence 3556666666542 366665555554444 677888888776654433 3333 478999999999999999
Q ss_pred CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC
Q 038818 128 LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS 207 (486)
Q Consensus 128 ~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~ 207 (486)
+++.. .+|++|+||||||+.|++++|++. ++.+|++|+.+|+|+.++++++|+ .++.||+++
T Consensus 80 ~~~~~-----~~G~~TsGgTean~~a~~~ar~~~---------~~~~ii~s~~~H~Sv~ka~~~lg~---~~~~V~~~~- 141 (380)
T PRK02769 80 IPFNE-----SWGYITNGGTEGNLYGCYLARELF---------PDGTLYYSKDTHYSVSKIARLLRI---KSRVITSLP- 141 (380)
T ss_pred CCCCC-----CCEEEecChHHHHHHHHHHHHHhC---------CCcEEEeCCCceehHHHHHHHcCC---CCceeccCC-
Confidence 97541 268999999999999999998752 567899999999999999999999 788899875
Q ss_pred CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC---ceEEeeccccchhccCccchhhhc
Q 038818 208 SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS---IWVHVDAAYAGSACICPEFRHFID 284 (486)
Q Consensus 208 ~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g---~~lhvD~a~g~~~~~~~~~~~~~~ 284 (486)
+|+||+++|+++|+++ +..|++|++++|+|.+|.+||+++|+++|++|| +|+|||||++++.+++.+.+..++
T Consensus 142 -~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d 217 (380)
T PRK02769 142 -NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFS 217 (380)
T ss_pred -CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCC
Confidence 6799999999999875 556889999999999999999999999999998 699999999998876544333344
Q ss_pred CCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHH
Q 038818 285 GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRS 363 (486)
Q Consensus 285 ~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~ 363 (486)
...++||+++|+|||+++|+|||++++|++.. . .+....+|+.. .++++++||+ +.++++|.+++.
T Consensus 218 ~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~-~-~~~~~~~yl~~-----------~d~t~~GSR~g~~~l~lw~aL~~ 284 (380)
T PRK02769 218 FADGIDSIAISGHKFIGSPMPCGIVLAKKKYV-E-RISVDVDYIGS-----------RDQTISGSRNGHTALLLWAAIRS 284 (380)
T ss_pred ccCCCCEEEECCcccCCCCCCcEEEEEehhhh-h-hcccCccccCC-----------CCCCccCCCCcHHHHHHHHHHHH
Confidence 44489999999999999999999999997643 2 33444566532 2347889997 578999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEE
Q 038818 364 FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYV 443 (486)
Q Consensus 364 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 443 (486)
+|.+|++++++++.++++++.++|++. +++++.+|.+++|+|+... + .+. +|+ .+
T Consensus 285 lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f~~~~--------------~----~~~-----~~w-~l 339 (380)
T PRK02769 285 LGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFPCPS--------------E----RIW-----KKW-HL 339 (380)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEEcCCC--------------H----HHH-----hCe-eE
Confidence 999999999999999999999999885 8999999999999997542 1 121 254 23
Q ss_pred eeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 444 SHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 444 ~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.. +..+|+++| |+.+++.||++++.|.+...
T Consensus 340 ~~~----~~~~hi~~~-~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 340 ATS----GNQAHIITM-PHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred ccc----CCEEEEEEC-CCCCHHHHHHHHHHHHHHHh
Confidence 332 237999997 78888899999999988764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=355.50 Aligned_cols=340 Identities=36% Similarity=0.600 Sum_probs=287.3
Q ss_pred cceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTL 154 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al 154 (486)
|++++++++.+++.++|+++..+|++...|..+|...++|+++++|+++++|++ .. ..+++|+|||+||+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~------~~~~~t~ggt~a~~~al 74 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSED------ADGVFTSGGSESNLLAL 74 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCC------CCEEEeCChhHHHHHHH
Confidence 678888889999999999999999999889999999999999999999999997 32 26899999999999999
Q ss_pred HHHHHHHHHHcccc---CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 155 AAARDQILNEIGRE---NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 155 ~~a~~~~~~~~~~~---~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
.+++.+..++.... ..++.+|+++..+|+++.++++.+|. +++.+|+++ ++.+|+++|++++++..+++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~ 149 (345)
T cd06450 75 LAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDV---KVRLVPVDE--DGRMDPEALEAAIDEDKAEGLNP 149 (345)
T ss_pred HHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhc---CeEEeeeCC--CCCcCHHHHHHHHHHHHHCCCCc
Confidence 99887543321111 11356899999999999999999999 999999986 45999999999998877777778
Q ss_pred EEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEe
Q 038818 232 LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWV 311 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~ 311 (486)
.+|+++.++|++|.++|+++|+++|+++|+|+|+|+||+++....+.......++.++|++++++|||+++|+++|++++
T Consensus 150 ~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~ 229 (345)
T cd06450 150 IMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV 229 (345)
T ss_pred EEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHH
Confidence 88999999999999999999999999999999999999888765544443334456899999999999999999998765
Q ss_pred eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC
Q 038818 312 KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN 391 (486)
Q Consensus 312 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 391 (486)
+ ++++|.+++.++.+++++++++..++++++.+.|++++
T Consensus 230 ~-----------------------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~ 268 (345)
T cd06450 230 R-----------------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADP 268 (345)
T ss_pred H-----------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 46778899999999999999999999999999999999
Q ss_pred CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHH
Q 038818 392 RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 392 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~ 471 (486)
+++++.++..++++|++.+.. ..+..+.++.++|.++|.+++++..+.+..++|++++++++|++|||++
T Consensus 269 ~~~~~~~~~~~iv~f~~~~~~----------~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l 338 (345)
T cd06450 269 GFELLGEPNLSLVCFRLKPSV----------KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADAL 338 (345)
T ss_pred CeEEecCCceeEEEEEECCcc----------hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHH
Confidence 999888788999999986520 0123345788888888876676666656789999998878899999999
Q ss_pred HHHHHH
Q 038818 472 WKVVQE 477 (486)
Q Consensus 472 i~~l~~ 477 (486)
+++|++
T Consensus 339 ~~~l~~ 344 (345)
T cd06450 339 LEDIER 344 (345)
T ss_pred HHHHHh
Confidence 999976
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=287.00 Aligned_cols=391 Identities=16% Similarity=0.192 Sum_probs=302.9
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCcCCCCC-CcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHH
Q 038818 44 ESAPYNPEPIETILQDVQQHIVPGITHWQSP-YYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWL 122 (486)
Q Consensus 44 ~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l 122 (486)
..+|++|.+-+++++.+.+...-....+..+ .+..|. ..+..-..+.+.+..+ |....+.-|....+|+++++++
T Consensus 54 ~~lP~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~-~~~~~~~l~~~~~~k~---N~l~~d~fp~~~~~e~~~Vnm~ 129 (491)
T KOG1383|consen 54 FTLPSKGLPKDAVLELINDELMLDGNPRLGLASGVVYW-GEPELDKLIMEAYNKF---NPLHPDEFPVVRKLEAECVNMI 129 (491)
T ss_pred ecCCCCCCCHHHHHHHHHHHhccCCCcccCeeeEEEec-CCcchhhHHHHHHhhc---CccCccccchhHHHHHHHHHHH
Confidence 5789999999999999998765433322222 122222 1333444444444433 5666778899999999999999
Q ss_pred HHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEE
Q 038818 123 GEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202 (486)
Q Consensus 123 ~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v 202 (486)
+.||+.+.+ ..|..|+|||+|.+.+....+++.... .++.++.++++...|.+++|+++++++ .++.|
T Consensus 130 ~~L~~~~~~------~~g~~t~G~Ses~l~~~k~~~~~r~~~---k~I~~p~iv~~~~v~~a~eK~a~yf~v---~l~~V 197 (491)
T KOG1383|consen 130 ANLFNAPSD------SCGCGTVGGSESGLAAKKSYRNRRKAQ---KGIDKPNIVTPQNVHAAFEKAARYFEV---ELREV 197 (491)
T ss_pred HHHhcCCcc------ccCccccccchHHHHHHHHHHHHHHhc---cCCCCccccchHHHHHHHHHHHhhEEE---EEEee
Confidence 999999854 378999999999777777666654332 356788899999999999999999999 99999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH-hCceEEeeccccchhcc-C--cc
Q 038818 203 KTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR-YSIWVHVDAAYAGSACI-C--PE 278 (486)
Q Consensus 203 ~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~-~g~~lhvD~a~g~~~~~-~--~~ 278 (486)
|+++ +++++|+..+.+.+++++ ++|++..+++++|.+||+++|.++.-+ |++.+|||+|.||+..+ . +.
T Consensus 198 ~~~~-~~~~~D~~k~~~~i~eNt------i~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~ 270 (491)
T KOG1383|consen 198 PLDE-GDYRVDPGKVVRMIDENT------IMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNE 270 (491)
T ss_pred eccc-cceEecHHHHHHHhccce------EEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCc
Confidence 9997 589999999999999986 489999999999999999999999998 99999999999998774 1 11
Q ss_pred chhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC-chHH
Q 038818 279 FRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKL 357 (486)
Q Consensus 279 ~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~ 357 (486)
.+.- -+..++-|++.|+||++.+|.|.|+++.|++..+...+...+.|+.+. +...|+.+||... ..+.
T Consensus 271 ~~fd-Fr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~---------y~s~TlngSR~g~~va~~ 340 (491)
T KOG1383|consen 271 EEFD-FRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGI---------YASPTLNGSRPGSQVAAQ 340 (491)
T ss_pred cccc-cCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCcc---------ccCcccccCCcccHHHHH
Confidence 1111 134589999999999999999999999999988766666666666542 4456899999854 5789
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh
Q 038818 358 WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA 437 (486)
Q Consensus 358 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 437 (486)
|+++-.+|.+||.+..+++.+.+++|++.|++++++.++++|...++.|..... +. -++.+.|.+
T Consensus 341 wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~-------------~i--~elsd~l~~ 405 (491)
T KOG1383|consen 341 WAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDV-------------NI--FELSDLLRK 405 (491)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCcc-------------ch--hhhhHHHHh
Confidence 999999999999999999999999999999999999999887665555543321 21 256777778
Q ss_pred cCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 438 SGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 438 ~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
.|+..-..+... .+.+|++--++.++-.|+++..|++++++|.+.
T Consensus 406 ~GW~lnalq~P~---a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~ 450 (491)
T KOG1383|consen 406 KGWILNALQFPA---AIHICVTRVHAREDVADRFVADIRKVVEELKSL 450 (491)
T ss_pred cCcCccccCCCC---ceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhC
Confidence 898543332222 456666544556655799999999999998764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=295.95 Aligned_cols=367 Identities=20% Similarity=0.239 Sum_probs=269.9
Q ss_pred CCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCC
Q 038818 51 EPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPK 130 (486)
Q Consensus 51 ~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~ 130 (486)
.+.+++|+.|++...++... . +|+|...+. ..|.++ +.+..++..+.......+....++.++++++++++|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 76 (371)
T PRK13520 2 LSEEEILEELEEYRSEDLKY-E--RILSSMCTE-PHPIAR-KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPD 76 (371)
T ss_pred CCHHHHHHHHHHHHhcCCCH-H--HeeeeeecC-chHHHH-HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence 46789999999977665543 2 588887654 334433 444444433222212224567888899999999999976
Q ss_pred CCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCc
Q 038818 131 SFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSF 210 (486)
Q Consensus 131 ~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~ 210 (486)
. .+++++|||++|..++.+++.... .++..|+++..+|+++.++++..|+ +++.||+++ ++
T Consensus 77 ~-------~~~~~~ggt~a~~~a~~~~~~~~~-------~~~~~vl~~~~~h~s~~~~~~~~g~---~~~~v~~~~--~~ 137 (371)
T PRK13520 77 A-------YGYITSGGTEANIQAVRAARNLAK-------AEKPNIVVPESAHFSFDKAADMLGV---ELRRAPLDD--DY 137 (371)
T ss_pred C-------CeEEecCcHHHHHHHHHHHHhhcc-------CCCceEEecCcchHHHHHHHHHcCc---eEEEecCCC--CC
Confidence 5 578999999999999888765310 1356788999999999999999999 999999875 56
Q ss_pred ccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhc-CCCCC
Q 038818 211 TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID-GIEGA 289 (486)
Q Consensus 211 ~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~-~~~~a 289 (486)
.+|+++|+++|+++ +.+|++++++|++|.++|+++|+++|+++|+++|||+||+++..........+. ...++
T Consensus 138 ~~d~~~l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~v 211 (371)
T PRK13520 138 RVDVKAVEDLIDDN------TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV 211 (371)
T ss_pred cCCHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCC
Confidence 89999999999764 336778888999999999999999999999999999999876542211100011 13479
Q ss_pred CceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHHHHhchHH
Q 038818 290 DSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVAN 368 (486)
Q Consensus 290 Dsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g 368 (486)
|++++++|||+.+|.++|.++++++..+. .+....+|+.... .+...+++.. ..++++.++..++.++
T Consensus 212 d~~~~s~~K~~~a~~~~G~~~~~~~~~~~-~l~~~~~~~~~~~----------~~~~~gt~~~~~~~~~~~al~~l~~~g 280 (371)
T PRK13520 212 DSITIDPHKMGLAPIPAGGILFRDESYLD-ALAVDTPYLTSKK----------QATLTGTRSGAGVAATYAVMKYLGREG 280 (371)
T ss_pred ceEEECCccccCccCCceEEEEcCHHHHH-hhcccCccccCCC----------CcceEeeccChHHHHHHHHHhhhcHhH
Confidence 99999999999999999999988775543 3333334543211 1122344442 3567888999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE
Q 038818 369 LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV 448 (486)
Q Consensus 369 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~ 448 (486)
++++.++..++++++.+.|+++ +++++.++..++++|.+.+ .+++.++|.++|+. +...
T Consensus 281 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~-----------------~~~v~~~L~~~gi~-v~~~-- 339 (371)
T PRK13520 281 YRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPN-----------------PDEVREKLRERGWR-VSVT-- 339 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCC-----------------HHHHHHHHHHCCce-eccC--
Confidence 9999999999999999999988 8885556667888887642 23566667677864 3332
Q ss_pred CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 449 AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 449 ~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+..++|++++ +.+|++||+++++.|+++++
T Consensus 340 ~~~~~iRis~~-~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 340 RCPEALRIVCM-PHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHhh
Confidence 23457999985 57899999999999998764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=283.66 Aligned_cols=343 Identities=15% Similarity=0.114 Sum_probs=257.6
Q ss_pred CCcceecCCCCCHHHHHHHHH---Hhh-cCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 74 PYYFAYFPSSGSIAGFLGEML---SSG-FNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l---~~~-~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
+-|++|..+.+..|.++..++ +.. .|++. .+..+..+..+-++.++.+++++|+++. .++|||||||+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~-------eIiFTSG~TEs 73 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE-------EIIFTSGATES 73 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEecCCcHH
Confidence 458888888887777665543 333 35555 5556777777777899999999999886 79999999999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc---CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHH
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA---GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ 226 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~---G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~ 226 (486)
|.+|+..+.....++ ..+..|++|...|.++...++++ |+ +|.++|+|. +|.+|+++|+++|++++
T Consensus 74 nNlaI~g~~~a~~~~-----~~~~HIIts~iEH~aVl~~~~~Le~~g~---~Vtyl~V~~--~G~v~~e~L~~al~~~T- 142 (386)
T COG1104 74 NNLAIKGAALAYRNA-----QKGKHIITSAIEHPAVLNTCRYLERQGF---EVTYLPVDS--NGLVDLEQLEEALRPDT- 142 (386)
T ss_pred HHHHHHhhHHhhhcc-----cCCCeEEEcccccHHHHHHHHHHHhcCC---eEEEeCCCC--CCeEcHHHHHHhcCCCc-
Confidence 999988754332111 14567889999999999999999 88 999999997 67999999999999875
Q ss_pred CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc
Q 038818 227 AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 227 ~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~ 306 (486)
.+|.+.+.+|.+|.++||++|+++|+++|++||||++++.+.+..+-.. -++|.+++|+||+. +|.|+
T Consensus 143 -----~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~------~~vD~ls~SaHK~~-GpkGi 210 (386)
T COG1104 143 -----ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEE------LGVDLLSFSAHKFG-GPKGI 210 (386)
T ss_pred -----eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccc------cCcceEEeehhhcc-CCCce
Confidence 4899999999999999999999999999999999999988877664321 15999999999965 69999
Q ss_pred eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCch------HHHHHHHHhchHHHHHHHHHHHHHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL------KLWLVLRSFGVANLRNFLRSHVRMA 380 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l------~~~~~l~~~g~~g~~~~~~~~~~~a 380 (486)
|++++|+.-.+ .+.+.+. +.+.++|.... ++-.+++ +..+.+.....+...++
T Consensus 211 GaLyv~~~~~~-------~p~i~GG-------------gQE~g~RsGTenv~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr 269 (386)
T COG1104 211 GALYVRPGVRL-------EPLIHGG-------------GQERGLRSGTENVPGIVGFGKAAE-IAVEELEEENARLRKLR 269 (386)
T ss_pred EEEEECCCCcc-------CceeccC-------------cCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999765332 2334332 23455554432 2222222 34566777888899999
Q ss_pred HHHHHHHhCC-CCeEEecCC--C-eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-----eE---
Q 038818 381 QLFQELVGGD-NRFEIVAPR--N-FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG-----MV--- 448 (486)
Q Consensus 381 ~~l~~~L~~~-~~~~~~~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-----~~--- 448 (486)
++|.+.|.+. |++.+...+ . .++++|.+.... .+.+.-.|...|+.+-++. ..
T Consensus 270 ~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~---------------gE~ll~~L~~~gI~vStGSACsS~~~~pS 334 (386)
T COG1104 270 DRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE---------------GESLLLALDLAGIAVSTGSACSSGSLEPS 334 (386)
T ss_pred HHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc---------------HHHHHHhccccCeEEeccccccCCCCCcc
Confidence 9999999875 888887653 2 467788887643 2344545555566422211 00
Q ss_pred -----------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 449 -----------AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 449 -----------~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.-+..+|||+ +..||++|||++++.+.++++++.+
T Consensus 335 hVL~AmG~~~e~a~~siR~S~-g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 335 HVLRAMGISEELAHGSIRFSL-GRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred HHHHHcCCChHHhCccEEEEc-CCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 1257899999 5799999999999999999988764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=289.97 Aligned_cols=368 Identities=19% Similarity=0.230 Sum_probs=264.8
Q ss_pred CHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCC
Q 038818 52 PIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKS 131 (486)
Q Consensus 52 ~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~ 131 (486)
+.+++++.|.+. +.+..+.++++++..+...+..+. .+.+..++..+.......+....+++++++++++++|+++.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 77 (373)
T TIGR03812 1 SEEEVLEELKEY-RSEDLKYSDGRILGSMCTNPHPIA--VKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDA 77 (373)
T ss_pred CHHHHHHHHHHH-HhcCCCCCCCcEEEEEeCCchHHH--HHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC
Confidence 468999999984 566666688888887765444442 22233333222111122345678889999999999999765
Q ss_pred CccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcc
Q 038818 132 FLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFT 211 (486)
Q Consensus 132 ~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~ 211 (486)
.+++++||+++++.++.+++..... +.+++.|+++..+|+++.++++..|+ +++.+|+++ ++.
T Consensus 78 -------~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~g~~vl~~~~~h~~~~~~~~~~G~---~~~~v~~~~--~~~ 140 (373)
T TIGR03812 78 -------YGYIVSGGTEANIQAVRAAKNLARE-----EKRTPNIIVPESAHFSFEKAAEMLGL---ELRYAPLDE--DYT 140 (373)
T ss_pred -------CeEEeccHHHHHHHHHHHHHHHHhc-----cCCCcEEEECCcchHHHHHHHHHcCC---eEEEEeeCC--CCC
Confidence 6788999999998887766542110 11446788999999999999999999 999999875 578
Q ss_pred cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccc---hhhhc-CCC
Q 038818 212 LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEF---RHFID-GIE 287 (486)
Q Consensus 212 ~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~---~~~~~-~~~ 287 (486)
+|+++|++++++.+ ..++.+.++|++|.++|+++|+++|+++|+|+|||+||+++....... ...+. ...
T Consensus 141 ~d~~~l~~~l~~~~------~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~ 214 (373)
T TIGR03812 141 VDVKDVEDLIDDNT------IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLP 214 (373)
T ss_pred cCHHHHHHHHhhCc------EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCC
Confidence 99999999997643 245555689999999999999999999999999999998765422110 00011 123
Q ss_pred CCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhch
Q 038818 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGV 366 (486)
Q Consensus 288 ~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~ 366 (486)
++|++++++|||+.+|.++|.+++++++.+. .+....+|+.... .+...+++. ...++++.+++.++.
T Consensus 215 ~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~-~l~~~~~~~~~~~----------~~~~~gt~~~~~~~~~~~~l~~l~~ 283 (373)
T TIGR03812 215 GVQSITIDPHKMGLSPIPAGGILFRSKSYLK-YLSVDAPYLTVKK----------QATITGTRSGASAAATYAVIKYLGR 283 (373)
T ss_pred CCCEEEECccccCCCcCCceEEEEeCHHHHh-hhcccCcccCCCC----------CcceEeechhHHHHHHHHHHHHhCH
Confidence 7899999999999999999988887766543 3333334443211 112334554 345788889998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee
Q 038818 367 ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG 446 (486)
Q Consensus 367 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 446 (486)
+++++..++..+++++|++.|+++ +++.+.++..++++|+..+ ...+.++|.++|+. +...
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~-----------------~~~v~~~L~~~gi~-v~~~ 344 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDD-----------------PEEVRKKLRDRGWY-VSVT 344 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCC-----------------HHHHHHHHHHCCce-eccC
Confidence 999999999999999999999998 5665555677888887642 12566677777864 4332
Q ss_pred eECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 447 MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 447 ~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+..++|++++ ..+|++|+|+++++|+++
T Consensus 345 --~~~~~iRis~~-~~~t~edid~l~~~L~~~ 373 (373)
T TIGR03812 345 --RCPKALRIVVM-PHVTREHIEEFLEDLKEI 373 (373)
T ss_pred --CCCCEEEEEEE-CCCCHHHHHHHHHHHhhC
Confidence 23468999996 468888999999999763
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=286.64 Aligned_cols=352 Identities=17% Similarity=0.169 Sum_probs=260.6
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc---CCCc--cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF---NVVG--FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~---n~~~--~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
.||.+..++. .|..+.+.+..++ +.|. ..+..+..+++.+.++++.+++++|.++. ..++||.|+|++
T Consensus 24 vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~------~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS------DEIVFTRGTTEA 96 (405)
T ss_pred EEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC------CeEEEeCChhHH
Confidence 4666655444 5666666666543 3332 35555666788888999999999999852 179999999999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~ 225 (486)
+.......... .+ +++.|+++...|+| |...++..|+ +++.+|+++ ++.+|++++++.+++.+
T Consensus 97 ln~va~~l~~~-~~-------~gdeIv~s~~EH~sn~~pw~~~~~~~Ga---~v~~i~~~~--~g~~~~~~~~~~i~~~T 163 (405)
T COG0520 97 LNLVARGLGRS-LK-------PGDEIVVSDLEHHSNIVPWQELAKRTGA---KVRVIPLDD--DGLLDLDALEKLITPKT 163 (405)
T ss_pred HHHHHHHhhhh-hc-------CCCEEEEccCcchhhHHHHHHHHHhcCc---EEEEEecCC--CCCcCHHHHHHhcCCCc
Confidence 76554443211 11 56889999999988 5667777799 999999984 67999999999888765
Q ss_pred HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
+ +|++++.+|.+|.+.|+++|+++||++|+|+.||+|++.+.+..+- +.. ++|++.+++|||+++|.|
T Consensus 164 k------lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv-~~l-----~~Df~afsgHKwl~gP~G 231 (405)
T COG0520 164 K------LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDV-QEL-----GCDFLAFSGHKWLLGPTG 231 (405)
T ss_pred e------EEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCc-hhc-----CCCEEEEcccccccCCCc
Confidence 4 8999999999999999999999999999999999999988876643 221 899999999999999999
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCcc-CC-----CCCccCCCCccccCCCC--CCchHHHHHHHHhchHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKA-SD-----SKQVVDYKDWQITLSRR--FRALKLWLVLRSFGVANLRNFLRSHV 377 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~-~~-----~~~~~~~~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~ 377 (486)
+|++++|++..- +. .++..+.. .. ....++...+.++.+.. ...+.+-.+++.+...|+.++.++..
T Consensus 232 iGvLy~r~~~l~-~l----~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~ 306 (405)
T COG0520 232 IGVLYVRKELLE-EL----EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHER 306 (405)
T ss_pred eEEEEEchHHHh-hc----CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 999999987442 11 22222211 00 11112222333344433 23356667788877788999999999
Q ss_pred HHHHHHHHHHhCCCCeEEecCC---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-----
Q 038818 378 RMAQLFQELVGGDNRFEIVAPR---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA----- 449 (486)
Q Consensus 378 ~~a~~l~~~L~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----- 449 (486)
++++++.+.|+++|++++.+++ ..++++|.+.... ...+...|.++|+. +......
T Consensus 307 ~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~---------------~~dv~~~L~~~gI~-vr~g~~ca~p~~ 370 (405)
T COG0520 307 ELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIH---------------PHDVATLLDEKGIA-VRAGHHCAQPLH 370 (405)
T ss_pred HHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCC---------------HHHHHHHHHhCCeE-EEeccccccHHH
Confidence 9999999999999999999875 5889999998642 45667777788853 3222111
Q ss_pred ---C-EeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 450 ---G-IYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 450 ---~-~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+ ...+|+|+ ++++|++|||+|+++|+++.+
T Consensus 371 ~~~~~~~~iR~S~-~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 371 RLLGVDATIRASL-HLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HhcCCCCceEEEE-eecCCHHHHHHHHHHHHHHhh
Confidence 1 23499999 578888899999999998764
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=276.27 Aligned_cols=399 Identities=16% Similarity=0.090 Sum_probs=263.0
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhh-cCCCcccc---ccChh
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSG-FNVVGFNW---MSSPA 110 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~-~n~~~~~~---~~~~~ 110 (486)
|+.++..-+..+|+ .|+.++++++.++..++.... ..|.|.-.+...++..+.+.+... ...+...| ..+.+
T Consensus 35 p~~~~~~~~~~~~~--~se~~~~~~~~~l~~~n~~~~--~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG 110 (481)
T PRK04366 35 PEELLRKEPPELPE--VSELEVVRHYTRLSQKNYGVD--TGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQG 110 (481)
T ss_pred CHHHhcCCCCCCCC--CCHHHHHHHHHHHHhcCCCCC--cceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhH
Confidence 55565555567887 899999999999776665422 257665533333333444443333 11344566 35666
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
..++..++.+|+++++|++. ..+..++|+.+.+.++.+++.....+ |. .++..|+++...|.+....++
T Consensus 111 ~lel~~~~~~~la~l~G~~~--------~~l~~~~GA~a~~~~l~~~r~~~~~~-Gd--~~~~~Vlv~~~~hp~~~~~~~ 179 (481)
T PRK04366 111 ALELMYELQEWLKEITGMDA--------VTLQPAAGAHGELTGLLMIRAYHEAR-GD--TKRTEVIVPDSAHGTNPASAA 179 (481)
T ss_pred HHHHHHHHHHHHHHHhCCCc--------eEEEeCcHHHHHHHHHHHHHHHhhcc-Cc--CCCCEEEEcCCccHhHHHHHH
Confidence 77888999999999999974 34555677777776666554432211 10 134578899999999999999
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-CCchHHHHHHHHhCceEEeeccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-DPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-dpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
..|+ +++.+|+++ +|.+|+++|++++++++ .+|+++.++ ++|.+ +|+++|+++|+++|+|+|||+|+
T Consensus 180 ~~G~---~vv~v~~~~--~~~~D~e~L~~~i~~~t------~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~ 247 (481)
T PRK04366 180 MAGF---KVVEIPSNE--DGLVDLEALKAAVGEDT------AALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGAN 247 (481)
T ss_pred HcCC---EEEEeecCC--CCCcCHHHHHhhcccCC------eEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecC
Confidence 9999 999999974 57999999999997654 367777766 89988 69999999999999999999999
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccCCCCcc-----eEEEeeCchHHHHHhcCCcccccCccCCCCCccCC-CC
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC-----CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY-KD 343 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~-----g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~ 343 (486)
..+.+..... +-.++|++++++||||++|.++ |+++++++.. +.+ ++.+...... .....+ ..
T Consensus 248 ~~~~~g~~~~-----~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~--~~l---p~~~v~~~g~-~~~l~~~r~ 316 (481)
T PRK04366 248 LNAILGKARP-----GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELA--PFL---PVPVVEKDGD-RYRLDYDRP 316 (481)
T ss_pred hhhhcccCCc-----cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhH--hhC---CCCeeeccCC-ceeeccccc
Confidence 6543211111 1237999999999999988765 5788876522 222 2222111000 000111 11
Q ss_pred ccccCCCCCC-----chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCC
Q 038818 344 WQITLSRRFR-----ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 344 ~~~~~sr~~~-----~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~ 417 (486)
..+.-.+.+. ++++|.++..+|.+|++++.++...+++||+++|+++ +++..+ +..+.+.|.......
T Consensus 317 ~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~---- 390 (481)
T PRK04366 317 KSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKE---- 390 (481)
T ss_pred ccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECccccc----
Confidence 1111122222 3688999999999999999999999999999999887 444322 333444444321000
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeee-eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHG-MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
. +....++.++|.+.|+...... .......+|++++ ..+|++|||+++++|+++.+++.+
T Consensus 391 ----~--g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~-e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 391 ----T--GVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPT-ETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred ----c--CCCHHHHHHHHHHCCccCCccccccccCCeEEEccc-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 1124567778888887422110 0112457999985 688899999999999999887654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=282.41 Aligned_cols=385 Identities=14% Similarity=0.095 Sum_probs=268.6
Q ss_pred CCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCC--ccccc---cChhhHHHHHHHHHHHHHH
Q 038818 51 EPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVV--GFNWM---SSPAATELENIVMDWLGEM 125 (486)
Q Consensus 51 ~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~--~~~~~---~~~~~~~le~~~~~~l~~l 125 (486)
.|+.++++.+.++-.++.... + .|.+.-.+..-.++ +.+++....+.. .+.|. .+.+..+++.++.+||+++
T Consensus 466 ~sE~e~~r~~~~L~~kn~~~~-~-~fi~lGsctmk~na-~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~el 542 (939)
T TIGR00461 466 HSETEMLRYLHRLESKDLALN-N-SMIPLGSCTMKLNA-TAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSI 542 (939)
T ss_pred CCHHHHHHHHHHHHhcCCCcc-c-cCCCCccCCCccCH-HHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHH
Confidence 389999999998766664432 2 34443323222333 444443333322 22332 4455789999999999999
Q ss_pred cCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC
Q 038818 126 LKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT 205 (486)
Q Consensus 126 ~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d 205 (486)
+|++. .++..++|+++++++++++|.... ..|.. ++.+|++|..+|.+..+.++..|+ +++.||+|
T Consensus 543 tGmd~--------~Sl~p~aGA~gE~agL~aiR~y~~-~rge~--~R~~vlip~saHgtnPasa~~~G~---~Vv~V~~d 608 (939)
T TIGR00461 543 TGFDA--------ISLQPNSGAQGEYAGLRVIRSYHE-SRGEN--HRNICLIPVSAHGTNPASAAMAGM---QVVPVNCD 608 (939)
T ss_pred HCCCC--------cccCCchHHHHHHHHHHHHHHHHH-hcCCC--CCCEEEEEccccCcCHHHHHHCCC---EEEEeccC
Confidence 99985 467888899999989998887542 12221 567899999999999999999999 99999998
Q ss_pred CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC-chHHHHHHHHhCceEEeeccccchhccCccchhhhc
Q 038818 206 KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP-LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID 284 (486)
Q Consensus 206 ~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp-l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~ 284 (486)
+ +|.+|+++|++++++ .+..+.+|++++++| +|.++| +++|+++|+++|.+++||+|+..........
T Consensus 609 ~--~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~P----- 677 (939)
T TIGR00461 609 Q--DGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSP----- 677 (939)
T ss_pred C--CCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCc-----
Confidence 5 579999999999975 233467899999999 799977 9999999999999999999996543322211
Q ss_pred CCCCCCceeeccccccCCCCcc-----eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc----h
Q 038818 285 GIEGADSFSLNAHKWFFTTLDC-----CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA----L 355 (486)
Q Consensus 285 ~~~~aDsi~~~~hK~l~~p~~~-----g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~----l 355 (486)
+-.++|++++|.||+|+.|.|+ |++.+|+. +...+ |+.......+..+. ..+.+...++.++. +
T Consensus 678 g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~l---Pg~~v~~t~d~~gr--eq~Iga~s~~~~g~a~~~l 750 (939)
T TIGR00461 678 GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFL---PKHDVVSMITGIGG--SKSIGSVSAAPYGSASILP 750 (939)
T ss_pred cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhc---CCCcccccccCCCC--ccccccccccccCcHHHHH
Confidence 2238999999999999966555 99999964 22222 22211110000000 01111222333333 8
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC----CCeeEEEEEeecCCCCCCCCCCccchHHHHHHH
Q 038818 356 KLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP----RNFAVVCFRVLPSASGLGDGKANEGANELNRKL 431 (486)
Q Consensus 356 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l 431 (486)
+.|++++.+|.+|+++..+....+|+|++++|++ +++++.+ +..+.++|++.+.. +..+..+.++
T Consensus 751 ~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~---------~~~g~~~~dI 819 (939)
T TIGR00461 751 ISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLK---------AKTGIEAIDV 819 (939)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchh---------hhcCCCHHHH
Confidence 9999999999999999999999999999999987 4576654 34577888887531 1223446778
Q ss_pred HHHHHhcCcEEEeee-eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 432 LESINASGQLYVSHG-MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 432 ~~~l~~~g~~~~~~~-~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.++|.+.|+...+.+ ...+. +=+.++ ..++++|||++++++.++.+++.+
T Consensus 820 akrL~d~G~hapt~~~pv~g~--lmiepT-E~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 820 AKRLQDYGFHAPTLSFPVPGT--LMVEPT-ESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred HHHHHhCCeeccccCCccCCe--EEEEee-ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 888989997533322 22343 334444 377889999999999999877653
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=282.30 Aligned_cols=399 Identities=14% Similarity=0.062 Sum_probs=268.4
Q ss_pred hhHHhhcCCCCCCC---CCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCC--cccc---c
Q 038818 35 PGYLRKRLPESAPY---NPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVV--GFNW---M 106 (486)
Q Consensus 35 p~~~~~~~~~~~p~---~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~--~~~~---~ 106 (486)
|..+++.-+..+|+ .-.|+.++++.++++-.++....++..++|.... ...|... +.+. ..+.. .+.| +
T Consensus 459 ~~~~~r~~~~~~~~~f~~~~sE~e~~r~~~~l~~kn~~~~~~~i~lGsct~-~~~p~~~-~~~~-~~~~f~~~hP~qp~e 535 (954)
T PRK05367 459 PAALLRTSAYLTHPVFNRYHSETEMMRYLRRLEDKDLALDRSMIPLGSCTM-KLNAAAE-MIPI-TWPEFANLHPFAPAE 535 (954)
T ss_pred CHHHhcCCcccCCcccCCCCCHHHHHHHHHHHHhcCcCcccceeeCCcCCC-cCCHHHH-HHHH-hCccccccCCCChHH
Confidence 44454443443443 2248999999999987777665555567888332 2223222 2222 22111 2222 3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.+.+..+++.++.+|+++++|++. ..+..+||+++++.+++++|....++ |.. ++.+|++|..+|.|+.
T Consensus 536 ~~qG~l~~i~e~q~~l~eltG~d~--------~sl~~~~ga~ge~agL~a~r~~~~~~-G~~--~r~~vlis~~aH~snp 604 (954)
T PRK05367 536 QAAGYRELIDQLEAWLAEITGYDA--------VSLQPNAGAQGEYAGLLAIRAYHESR-GEG--HRDVCLIPSSAHGTNP 604 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--------EEECccHHHHHHHHHHHHHHHHhhcc-CCC--CCCEEEEEchhhhhhH
Confidence 345577899999999999999974 23446678899988887777543221 211 4568999999999999
Q ss_pred HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
+++..+|+ +++.||++. ++.+|+++|++++++. +..+++|+++.+++..+..+|+++|+++|+++|+|+|||
T Consensus 605 ~sa~~~G~---~vv~v~~d~--~G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VD 676 (954)
T PRK05367 605 ASAVMAGM---KVVVVACDE--NGNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLD 676 (954)
T ss_pred HHHHHCCC---EEEEECCCC--CCCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEE
Confidence 99999999 999999985 5699999999999753 123678889999887444589999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCcce-----EEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCC-----CLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g-----~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
+|++++....... +.-++|++++++||||+.|.|+| ++++++. +. ...++.........
T Consensus 677 gA~~~al~~l~~p-----g~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~---p~lpg~~v~~~~~~------ 740 (954)
T PRK05367 677 GANMNAQVGLARP-----GDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LA---PFLPGHPVQIAGGE------ 740 (954)
T ss_pred CcChhhccCCCCh-----hhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--cc---ccCCCCccCcCCCC------
Confidence 9997554333211 12389999999999998888755 8888742 21 11122221100000
Q ss_pred CCccccCCCCC----CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec--C--CCeeEEEEEeecCCC
Q 038818 342 KDWQITLSRRF----RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA--P--RNFAVVCFRVLPSAS 413 (486)
Q Consensus 342 ~~~~~~~sr~~----~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~--~~~~~v~f~~~~~~~ 413 (486)
...+..++..+ .++..|.+++.+|.+|++++.+....+|+|++++|++. +++.. + +..+.++|.+.+..
T Consensus 741 ~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~~- 817 (954)
T PRK05367 741 TGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPLK- 817 (954)
T ss_pred CCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeeccc-
Confidence 00111122222 33568999999999999999999999999999999874 44432 2 33456666664321
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
...+..+..+.++|.+.|+..... .+...+.+|++++ ..++++|||+++++|+.+.+++.+
T Consensus 818 --------~~~g~~~~di~krL~d~G~~~~t~-~~pv~~~l~i~pt-E~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 818 --------ESTGITVDDIAKRLIDYGFHAPTM-SFPVAGTLMVEPT-ESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred --------ccCCCCHHHHHHHHHHCCCeEeec-CCccCCEEEEEee-ecCCHHHHHHHHHHHHHHHHHHHH
Confidence 000112356778888888753331 2233557999985 588889999999999999887754
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=257.94 Aligned_cols=381 Identities=14% Similarity=0.109 Sum_probs=248.7
Q ss_pred ChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHH------HHHhhcCCCcccccc
Q 038818 34 EPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGE------MLSSGFNVVGFNWMS 107 (486)
Q Consensus 34 ~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~l~~~~n~~~~~~~~ 107 (486)
=|++++...+.+||+++ +.+++++++.+....+.....+++++|.-..+...|..+.+ +++. ++++...+
T Consensus 31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~~~-- 106 (447)
T PRK00451 31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQPEI-- 106 (447)
T ss_pred CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCCcc--
Confidence 37788888888999975 99999999998765554444578888843222222333333 3333 44433322
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
++...+...+..+|+++++|++.. .+++|+|||+++.. +..++... ++..|+++...|.+..+
T Consensus 107 ~~g~~~~~~e~~~~la~l~g~~~~-------~v~~~~g~t~~~~~-~~~a~~~~---------~g~~Vlv~~~~~~~~~~ 169 (447)
T PRK00451 107 SQGTLQAIFEYQTMICELTGMDVA-------NASMYDGATALAEA-ALMAVRIT---------KRKKVLVSGAVHPEYRE 169 (447)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcc-------eEEecCcHHHHHHH-HHHHHHhc---------CCCEEEEeCccCHHHHH
Confidence 444566666777899999999875 68899999976544 44343211 56678889999999888
Q ss_pred HHHH----cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 AAQI----AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a~~~----~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
+++. .|+ +++.+|+++ + .+|+++|+++|++++ .+|+++++ |++|.++|+++|+++|+++|+|+
T Consensus 170 ~~~~~~~~~G~---~~~~v~~~~--~-~~d~~~l~~~i~~~t------~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~ 236 (447)
T PRK00451 170 VLKTYLKGQGI---EVVEVPYED--G-VTDLEALEAAVDDDT------AAVVVQYP-NFFGVIEDLEEIAEIAHAGGALF 236 (447)
T ss_pred HHHHHHHhCCc---EEEEecCCC--C-CCCHHHHHHhcCCCe------EEEEEECC-CCCCeeCCHHHHHHHHHHCCCEE
Confidence 7765 577 999999875 4 899999999986543 46777777 88999999999999999999999
Q ss_pred Ee--eccccchhccCccchhhhcCCCCCCceeeccccc-----cCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 264 HV--DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKW-----FFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 264 hv--D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~-----l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
+| |....+ .+..+ +--++|.++.++||| +++| ++|+++++++. .. .+. +..+.......
T Consensus 237 iv~~d~~~~g-~~~~~-------~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~-~~-~~~--~~~~g~~~~~~- 302 (447)
T PRK00451 237 IVGVDPVSLG-LLKPP-------GEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKL-VR-QMP--GRLVGETVDAD- 302 (447)
T ss_pred EEEcChHHhc-cCCCc-------ccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHH-Hh-hCC--CCEeeeecccC-
Confidence 98 644322 21111 112799999999997 4455 78988887542 22 221 11010000000
Q ss_pred CccCC----------CCccc----cCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe
Q 038818 337 QVVDY----------KDWQI----TLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF 401 (486)
Q Consensus 337 ~~~~~----------~~~~~----~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 401 (486)
+...+ ..+.. .++.. ..+++.+.+++.++.+|++++.++..++++++.+.|++++++++...+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 382 (447)
T PRK00451 303 GKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFF 382 (447)
T ss_pred CCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeE
Confidence 00000 00000 01100 01134445567788999999999999999999999999988988744434
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEE-EeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLY-VSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
..+++.+... ..++.++|.++|++. +....+ ....++|++++ ..+|++||++++++|+++
T Consensus 383 ~~~~v~~~~~----------------~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~-~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 383 NEFVVRLPKP----------------AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVT-EKRTKEDIDALVAALGEV 445 (447)
T ss_pred EEEEEecCCC----------------HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 4445554211 235677777777641 111111 11358999985 567888999999999876
Q ss_pred H
Q 038818 479 L 479 (486)
Q Consensus 479 ~ 479 (486)
.
T Consensus 446 ~ 446 (447)
T PRK00451 446 L 446 (447)
T ss_pred h
Confidence 4
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=251.54 Aligned_cols=341 Identities=13% Similarity=0.080 Sum_probs=233.4
Q ss_pred cceecCCCCCHHHHHHHHHHhhcC----CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGFN----VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~n----~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
||++-..++.++.+ .+.+..++. +....+..++.+..+.+++++++++++|.+++ .+++|+|||+++.
T Consensus 2 yld~aa~~~~~~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-------~i~~t~~~t~a~~ 73 (379)
T TIGR03402 2 YLDNNATTRVDPEV-LEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD-------EIIFTSGGTESDN 73 (379)
T ss_pred cCCCcCCCCCCHHH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCcHHHHHH
Confidence 56666555555544 334433321 11112223345566777899999999998765 6899999999998
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH---cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI---AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~---~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
.++....... .++.+|+++..+|+++...+.. .|+ +++.+|++. ++.+|+++|+++++++
T Consensus 74 ~al~~~~~~~--------~~~~~vv~~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~--~g~~~~~~l~~~i~~~---- 136 (379)
T TIGR03402 74 TAIKSALAAQ--------PEKRHIITTAVEHPAVLSLCQHLEKQGY---KVTYLPVDE--EGRLDLEELRAAITDD---- 136 (379)
T ss_pred HHHHHHHHhc--------CCCCeEEEcccccHHHHHHHHHHHHcCC---EEEEEccCC--CCcCCHHHHHHhcCCC----
Confidence 8887664321 0346788899999987655443 588 999999875 4689999999998654
Q ss_pred CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceE
Q 038818 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~ 308 (486)
+.+|++++++|++|.+.|+++|+++|+++|+++|+|++++.+....+- .. .++|++++++|| +++|.|+|+
T Consensus 137 --~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~-~~-----~~~D~~~~s~~K-~~gp~G~g~ 207 (379)
T TIGR03402 137 --TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDL-KE-----MNIDMLSLSGHK-LHGPKGVGA 207 (379)
T ss_pred --cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCc-cc-----CCCCEEEEcHHH-cCCCCceEE
Confidence 347888999999999999999999999999999999999876543321 11 279999999999 678999999
Q ss_pred EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-C-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 038818 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-F-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~ 386 (486)
+++++... ..| ++..... ....+.+.. . ..+++..+++.+ .++++++.++..++++++++.
T Consensus 208 l~v~~~~~------~~p-~~~g~~~---------~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~ 270 (379)
T TIGR03402 208 LYIRKGTR------FRP-LLRGGHQ---------ERGRRAGTENVPGIVGLGKAAELA-TEHLEEENTRVRALRDRLEAG 270 (379)
T ss_pred EEECCCCC------CCC-cccCCcc---------CCCcCCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Confidence 99986521 112 2211100 000111111 1 123334444443 456788888999999999999
Q ss_pred HhC-CCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE--------------
Q 038818 387 VGG-DNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-------------- 448 (486)
Q Consensus 387 L~~-~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------------- 448 (486)
|.+ ++++++..++. .+++.|.+.... ...+.+.|.++|+.+-++...
T Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~l 335 (379)
T TIGR03402 271 LLARIPDARLNGDPTKRLPNTVNISFEYIE---------------GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAM 335 (379)
T ss_pred HHhhCCCEEEeCCCccCCCCEEEEEecCCC---------------HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHc
Confidence 985 88999876542 347777765321 235566666677643222100
Q ss_pred -----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 449 -----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 449 -----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
...+.+|+|+ ++.+|++|||++++.|+++++++.
T Consensus 336 g~~~~~~~~~vR~S~-~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 336 GVPHTAAHGSIRFSL-SRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred CCChhhcCceEEEEc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0136899999 578899999999999999887754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=250.47 Aligned_cols=352 Identities=16% Similarity=0.113 Sum_probs=239.9
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc-----CCCccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF-----NVVGFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~ 148 (486)
-||++-.+++.+..++ +.+..++ |+....+..++.+.....++++.+++++|.+ ++ ..++|+|+|+
T Consensus 25 iYld~a~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-------~v~~t~g~t~ 96 (406)
T PRK09295 25 AYLDSAASAQKPSQVI-DAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAE-------ELVFVRGTTE 96 (406)
T ss_pred EEEeCcccccCCHHHH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCC-------eEEEeCCHHH
Confidence 5888876666555544 4433333 2222334445556677778999999999984 33 6899999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLD 224 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~ 224 (486)
++..++.......+ .+++.|+++...|++ +...++..|+ +++.+|+++ ++.+|+++|+++++++
T Consensus 97 ~l~~~~~~~~~~~~-------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~--~~~~d~~~l~~~i~~~ 164 (406)
T PRK09295 97 GINLVANSWGNSNV-------RAGDNIIISEMEHHANIVPWQMLCARVGA---ELRVIPLNP--DGTLQLETLPALFDER 164 (406)
T ss_pred HHHHHHHHhhhhcC-------CCcCEEEECcchhhHHHHHHHHHHHHcCc---EEEEEecCC--CCCCCHHHHHHhcCCC
Confidence 98766554321111 156678889999876 3456677898 999999875 5689999999998654
Q ss_pred HHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC
Q 038818 225 IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL 304 (486)
Q Consensus 225 ~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~ 304 (486)
+.+|++++++|++|.+.|+++|+++|+++|++++||++|+.+....+ ... .++|++++++||+ ++|.
T Consensus 165 ------t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~-~~~-----~~~D~~~~s~~K~-~gp~ 231 (406)
T PRK09295 165 ------TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVD-VQA-----LDCDFYVFSGHKL-YGPT 231 (406)
T ss_pred ------cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccC-chh-----cCCCEEEeehhhc-cCCC
Confidence 34889999999999999999999999999999999999977654332 111 2689999999995 5688
Q ss_pred cceEEEeeCchHHHHHhcCCcccccCccC-CC---CCccCC--CCccccCCCC-C-CchHHHHHHHHhchHHHHHHHHHH
Q 038818 305 DCCCLWVKNPNALIKALSTNPEFLRNKAS-DS---KQVVDY--KDWQITLSRR-F-RALKLWLVLRSFGVANLRNFLRSH 376 (486)
Q Consensus 305 ~~g~~~~~~~~~~~~~~~~~~~y~~~~~~-~~---~~~~~~--~~~~~~~sr~-~-~~l~~~~~l~~~g~~g~~~~~~~~ 376 (486)
|+|+++++++. +.. + +++..+... .. .....+ ....++.|.+ . ..+++..+++.+...|++++.++.
T Consensus 232 G~G~l~~~~~~-~~~-~---~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~ 306 (406)
T PRK09295 232 GIGILYVKEAL-LQE-M---PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYE 306 (406)
T ss_pred CcEEEEEchHh-Hhh-C---CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999997653 221 1 223222110 00 000000 1112222222 1 235667777777666888888999
Q ss_pred HHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee--------e
Q 038818 377 VRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG--------M 447 (486)
Q Consensus 377 ~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--------~ 447 (486)
.++++++.+.|++++++++..+. ..++++|.+.... ...+.+.|.+.|+.+-++. .
T Consensus 307 ~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~---------------~~~~~~~L~~~gI~v~~g~~c~~~~~~~ 371 (406)
T PRK09295 307 QNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH---------------AYDVGSFLDNYGIAVRTGHHCAMPLMAY 371 (406)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcC---------------HHHHHHHHHhCCeEEeccccchHHHHHH
Confidence 99999999999999999998653 4678899875321 2245556666676432211 0
Q ss_pred ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 448 VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 448 ~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
....+++|+|+ ++++|++|||+++++|+++..
T Consensus 372 ~~~~~~iRiS~-~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 372 YNVPAMCRASL-AMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HCCCCEEEEEc-cCCCCHHHHHHHHHHHHHHHH
Confidence 11135799999 578999999999999998765
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=248.92 Aligned_cols=355 Identities=13% Similarity=0.079 Sum_probs=242.7
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhcCC-----CccccccChhhHHHHHHHHHHHHHHcCC-CCCCccCCCcceEEcCCch
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGFNV-----VGFNWMSSPAATELENIVMDWLGEMLKL-PKSFLFSGTGGGVIQGTTC 147 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n~-----~~~~~~~~~~~~~le~~~~~~l~~l~g~-~~~~~~~~~~~~~~t~ggt 147 (486)
..||++-..++.+..++ +.+..++.. ....+..+....+...++++.+++++|. +++ .+++++|+|
T Consensus 20 ~~yld~a~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~-------~i~~~~~~t 91 (401)
T PRK10874 20 GVYLDSAATALKPQAVI-EATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAK-------NIVWTRGTT 91 (401)
T ss_pred eEEEeCCcccCCCHHHH-HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCC-------EEEEECCHH
Confidence 35788876665554443 444444421 1122233445567777899999999999 443 788999999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHH
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDL 223 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~ 223 (486)
+++..++.......+ .++..|+++...|++ +...++..|+ +++.+|++. ++.+|++++++++++
T Consensus 92 ~~i~~~~~~~~~~~~-------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~--~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 92 ESINLVAQSYARPRL-------QPGDEIIVSEAEHHANLVPWLMVAQQTGA---KVVKLPLGA--DRLPDVDLLPELITP 159 (401)
T ss_pred HHHHHHHHHhhhccC-------CCcCEEEECCcchHHHHHHHHHHHHHhCC---EEEEEecCC--CCcCCHHHHHHhcCc
Confidence 988766555421000 156788899999976 4566778899 999999875 568999999999976
Q ss_pred HHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC
Q 038818 224 DIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT 303 (486)
Q Consensus 224 ~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p 303 (486)
++ .+|++++++|++|.+.|+++|+++|+++|++++||++|+.+....+ .. .+ ++|.+++++||+ ++|
T Consensus 160 ~t------~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~-~~----~~-~~d~~~~s~~K~-~gp 226 (401)
T PRK10874 160 RT------RILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPAD-VQ----AL-DIDFYAFSGHKL-YGP 226 (401)
T ss_pred Cc------EEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCC-ch----hc-CCCEEEEecccc-cCC
Confidence 43 4788999999999999999999999999999999999975544322 11 12 689999999995 468
Q ss_pred CcceEEEeeCchHHHHHhcCCcccccCccC-C--CCCccCC--CCccccCCCC--CCchHHHHHHHHhchHHHHHHHHHH
Q 038818 304 LDCCCLWVKNPNALIKALSTNPEFLRNKAS-D--SKQVVDY--KDWQITLSRR--FRALKLWLVLRSFGVANLRNFLRSH 376 (486)
Q Consensus 304 ~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~-~--~~~~~~~--~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~ 376 (486)
.|+|+++++++ .+.. + .++...... . ......+ ..+.++.|.. ...+++..++..+...++.+..++.
T Consensus 227 ~G~G~l~~~~~-~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~ 301 (401)
T PRK10874 227 TGIGVLYGKSE-LLEA-M---SPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWS 301 (401)
T ss_pred CccEEEEEchH-HHhc-C---CCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 89999998754 2221 1 122211100 0 0000000 1112222222 1335666677766667777888889
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE--------
Q 038818 377 VRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-------- 448 (486)
Q Consensus 377 ~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------- 448 (486)
.++++++.+.|+++|++++..++..++++|.+.+.. ..++.+.|.++|+.+.++...
T Consensus 302 ~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~ 366 (401)
T PRK10874 302 RSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVH---------------HSDLVTLLAEYGIALRAGQHCAQPLLAAL 366 (401)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcC---------------HHHHHHHHHHCCcEEeccccchHHHHHHh
Confidence 999999999999999999887777788888865321 235666777778754332211
Q ss_pred CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 449 AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 449 ~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...+++|+|++ ..+|++|||+++++|+++++.+
T Consensus 367 g~~~~iRiS~~-~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 367 GVTGTLRASFA-PYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred CCCCEEEEEec-ccCCHHHHHHHHHHHHHHHHHh
Confidence 12468999996 5678889999999999988765
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=249.70 Aligned_cols=354 Identities=14% Similarity=0.070 Sum_probs=240.8
Q ss_pred CcceecCCCCCHHHHHHHHHHhhcC-----CCccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGFN-----VVGFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~n-----~~~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~ 148 (486)
-||++-..++.+.. +.+.+..++. +....+..++...+...++++.+++++|.+ ++ .+++|+|+|+
T Consensus 18 iyld~a~~~~~p~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~-------~i~~t~g~t~ 89 (398)
T TIGR03392 18 VYLDSAATALKPQA-VIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAE-------NIVWTRGTTE 89 (398)
T ss_pred EEeeCccccCCCHH-HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCC-------eEEEeCChHH
Confidence 57787766554444 4444444432 111223334445566678999999999985 33 6899999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLD 224 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~ 224 (486)
++..++........ .+++.|+++..+|++ +...++..|+ +++.+|+++ ++.+|+++|++++++.
T Consensus 90 ~l~~~~~~~~~~~~-------~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~--~~~~~~~~l~~~i~~~ 157 (398)
T TIGR03392 90 SINLVAQSYARPRL-------QPGDEIIVSEAEHHANLIPWLMVAQQTGA---KVVKLPIGA--DLLPDIRQLPELLTPR 157 (398)
T ss_pred HHHHHHHHhhhccC-------CCCCEEEECCcchhHHHHHHHHHHHHcCc---EEEEEecCC--CCCcCHHHHHHHhccC
Confidence 98776665421100 156788899999987 3456788899 999999975 4689999999998764
Q ss_pred HHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC
Q 038818 225 IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL 304 (486)
Q Consensus 225 ~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~ 304 (486)
+ .+|++++++|++|.+.|+++|+++|+++|+++++|++|+.+....+ .. .+ ++|.+++++||++ +|.
T Consensus 158 t------~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-~~----~~-~~d~~~~s~~K~~-gp~ 224 (398)
T TIGR03392 158 T------RILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPD-VQ----AL-DIDFYAFSGHKLY-GPT 224 (398)
T ss_pred c------eEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCC-hh----hc-CCCEEEEeccccc-CCC
Confidence 3 4788899999999999999999999999999999999976543321 11 11 6899999999955 588
Q ss_pred cceEEEeeCchHHHHHhcCCcccccCccC---CCCCccCC--CCccccCCCC-C-CchHHHHHHHHhchHHHHHHHHHHH
Q 038818 305 DCCCLWVKNPNALIKALSTNPEFLRNKAS---DSKQVVDY--KDWQITLSRR-F-RALKLWLVLRSFGVANLRNFLRSHV 377 (486)
Q Consensus 305 ~~g~~~~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~--~~~~~~~sr~-~-~~l~~~~~l~~~g~~g~~~~~~~~~ 377 (486)
|+|+++++++ .+. .+ +++...... .....+.+ ..+.++.|.. . ..+++..+++.+...|++++.++..
T Consensus 225 G~G~l~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~ 299 (398)
T TIGR03392 225 GIGVLYGKTE-LLE-AM---PPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSV 299 (398)
T ss_pred ceEEEEEcHH-HHh-hC---CCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999987754 222 11 122211100 00000000 0112222222 1 3356677777766667888889999
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee--------EC
Q 038818 378 RMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM--------VA 449 (486)
Q Consensus 378 ~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~ 449 (486)
++++++.+.|+++|++++..++..++++|.+.+.. .+.+.+.|.++|+.+-++.. +.
T Consensus 300 ~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~---------------~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g 364 (398)
T TIGR03392 300 SLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVH---------------HSDLAALLAESGIALRAGQHCAQPLMAALG 364 (398)
T ss_pred HHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcC---------------HHHHHHHHHhCCEEEecCccchHHHHHHhC
Confidence 99999999999999999876666788888865321 23566667777764332221 11
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 450 GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 450 ~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..+++|+|++ ..+|++|||+++++|+++++.+
T Consensus 365 ~~~~iRvS~~-~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 365 VSGTLRASFA-PYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred CCCEEEEEee-ccCCHHHHHHHHHHHHHHHHHh
Confidence 2468999995 5788889999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=247.78 Aligned_cols=318 Identities=14% Similarity=0.114 Sum_probs=223.6
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
.+..++.......++++++++++|.+ +. .+++|+|+|+++..++.+.... ..++..|+++..+|
T Consensus 34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~v~~~~g~t~a~~~~~~~l~~~--------~~~g~~vl~~~~~~ 98 (373)
T cd06453 34 VHELSARATDAYEAAREKVARFINAPSPD-------EIIFTRNTTEAINLVAYGLGRA--------NKPGDEIVTSVMEH 98 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCC-------eEEEeCCHHHHHHHHHHHhhhc--------CCCCCEEEECcchh
Confidence 44556667788888999999999987 33 6889999999987777665431 01456788899999
Q ss_pred hHH----HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH
Q 038818 183 SAL----QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR 258 (486)
Q Consensus 183 ~s~----~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~ 258 (486)
++. ...++..|+ +++.||++. ++.+|+++|++++.++ +.+|++++++|++|.+.|+++|.++|++
T Consensus 99 ~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~i~~~~~~ 167 (373)
T cd06453 99 HSNIVPWQQLAERTGA---KLKVVPVDD--DGQLDLEALEKLLTER------TKLVAVTHVSNVLGTINPVKEIGEIAHE 167 (373)
T ss_pred HHHHHHHHHHHhhcCc---EEEEeecCC--CCCcCHHHHHHHhcCC------ceEEEEeCcccccCCcCCHHHHHHHHHH
Confidence 884 445567788 999999874 5689999999998753 3478899999999999999999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCC--
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSK-- 336 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-- 336 (486)
+|+|+|+|++++.+....+ ... .++|++++++|||+++ .++|+++++++ ... .+. ++..+......
T Consensus 168 ~~~~li~D~a~~~~~~~~~-~~~-----~~~d~~~~s~~K~~~~-~g~g~~~~~~~-~~~-~~~---~~~~g~~~~~~~~ 235 (373)
T cd06453 168 AGVPVLVDGAQSAGHMPVD-VQD-----LGCDFLAFSGHKMLGP-TGIGVLYGKEE-LLE-EMP---PYGGGGEMIEEVS 235 (373)
T ss_pred cCCEEEEEhhhhcCceeee-ccc-----cCCCEEEeccccccCC-CCcEEEEEchH-Hhh-cCC---CeecCCCcccccc
Confidence 9999999999976554322 111 1689999999999987 78898888754 222 121 11111000000
Q ss_pred -CccCCC--CccccCCCC--CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--CeeEEEEEee
Q 038818 337 -QVVDYK--DWQITLSRR--FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFAVVCFRVL 409 (486)
Q Consensus 337 -~~~~~~--~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~~v~f~~~ 409 (486)
....+. ...+..+.. ...++++.+++.+..++++++.++..++++++.+.|+++++++++.++ ..++++|.+.
T Consensus 236 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (373)
T cd06453 236 FEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLE 315 (373)
T ss_pred ccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEEC
Confidence 000000 001111111 134677888888888889999999999999999999999899987543 3567788764
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee--------ECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM--------VAGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
.. ...++.+.|.++|+.+-++.. .....++|+++. +.+|++|+|+++++|
T Consensus 316 ~~---------------~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~~~~~l 373 (373)
T cd06453 316 GI---------------HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFG-LYNTEEEIDALVEAL 373 (373)
T ss_pred Cc---------------CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEec-CCCCHHHHHHHHhhC
Confidence 21 123567777777874322211 112468999995 678888999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=247.99 Aligned_cols=355 Identities=16% Similarity=0.118 Sum_probs=237.7
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc-----CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF-----NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
.|+++-..++.+.. +.+.+..++ |++...+..++.......++++.+++++|.+.. ..+++|+|+|++
T Consensus 20 ~yld~~~~~~~p~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~------~~v~~~~g~t~~ 92 (403)
T TIGR01979 20 VYLDSAATSQKPQQ-VIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD------EEIVFTRGTTES 92 (403)
T ss_pred EEEeCccccCCCHH-HHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC------CeEEEeCCHHHH
Confidence 46666655544443 345554443 222222333444555666888999999999732 168999999998
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH----HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL----QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~----~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~ 225 (486)
+..++.+...... .+++.|+++...|+|. .+.++..|+ +++.+|+++ ++.+|+++|++++.+.
T Consensus 93 l~~~~~~~~~~~~-------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~---~~~~v~~~~--~~~~~~~~l~~~i~~~- 159 (403)
T TIGR01979 93 INLVAYSWGDSNL-------KAGDEIVISEMEHHANIVPWQLLAERTGA---TLKFIPLDD--DGTLDLDDLEKLLTEK- 159 (403)
T ss_pred HHHHHHHhhhhcC-------CCCCEEEECcchhhHHHHHHHHHHHhcCc---EEEEEecCC--CCCCCHHHHHHHhccC-
Confidence 7665554322110 1567888999999874 456677898 999999985 5689999999998654
Q ss_pred HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
+.+|++++++|++|.+.|+++|+++|+++|+++|+|++|+.+....+ .. . .++|++++++||++ +|.|
T Consensus 160 -----~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~-~~----~-~~~d~~~~s~~K~~-gp~G 227 (403)
T TIGR01979 160 -----TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD-VQ----A-LDCDFYVFSGHKMY-GPTG 227 (403)
T ss_pred -----CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccC-cc----c-cCCCEEEEeccccc-CCCC
Confidence 45788999999999999999999999999999999999977654322 11 1 16899999999976 5889
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccC-CCCC----ccCCCCccccCCCC-C-CchHHHHHHHHhchHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKAS-DSKQ----VVDYKDWQITLSRR-F-RALKLWLVLRSFGVANLRNFLRSHVR 378 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~----~~~~~~~~~~~sr~-~-~~l~~~~~l~~~g~~g~~~~~~~~~~ 378 (486)
+|+++++++ ... .+ .++..+... .... .+....+.++.+.+ . ..++++.+++.+...|++++.++..+
T Consensus 228 ~g~l~~~~~-~~~-~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~ 302 (403)
T TIGR01979 228 IGVLYGKEE-LLE-QM---PPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHE 302 (403)
T ss_pred ceEEEEchH-HHh-cC---CCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999998754 222 11 112211100 0000 00000111222222 1 23566667776656678888999999
Q ss_pred HHHHHHHHHhCCCCeEEecCC----CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee--------
Q 038818 379 MAQLFQELVGGDNRFEIVAPR----NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG-------- 446 (486)
Q Consensus 379 ~a~~l~~~L~~~~~~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------- 446 (486)
+++++.+.|+++++++++.++ ..++++|.+.+.. ...+.+.|.+.|+.+-.+.
T Consensus 303 l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~L~~~gI~v~~g~~~~~~~~~ 367 (403)
T TIGR01979 303 LTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVH---------------PHDVGTILDEEGIAVRSGHHCAQPLMR 367 (403)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcC---------------HHHHHHHHhhCCEEEcchhhhhHHHHH
Confidence 999999999999999998654 3678888875321 2345566667776432211
Q ss_pred eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 447 MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 447 ~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+...+++|+++. +.+|++||++++++|+++++.+
T Consensus 368 ~~~~~~~iRiS~~-~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 368 RFGVPATCRASFY-IYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HhCCCCEEEEEec-cCCCHHHHHHHHHHHHHHHHHh
Confidence 1112468999984 7789999999999999987764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=247.74 Aligned_cols=311 Identities=13% Similarity=0.140 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH----H
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ----K 187 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~----~ 187 (486)
.....++++++++++|.+... .+++|+|+|+++..++..... ++..|+++..+|.++. .
T Consensus 43 ~~~~~~~~~~la~~~~~~~~~------~v~~~~g~t~al~~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~ 105 (376)
T TIGR01977 43 SREVEETRQLLAKLFNAPSSA------HVVFTNNATTALNIALKGLLK-----------EGDHVITTPMEHNSVARPLEC 105 (376)
T ss_pred HHHHHHHHHHHHHHhCcCCCC------eEEEeCCHHHHHHHHHHhccC-----------CCCEEEECcchhhHHHHHHHH
Confidence 456677889999999986532 688999999988766654221 5677888888998854 4
Q ss_pred HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 188 AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 188 a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
.++..|+ +++.++++. ++.+|+++|++++++. +.+|++++++|++|.+.|+++|.++|+++|++++||+
T Consensus 106 ~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~~~~~------~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~ 174 (376)
T TIGR01977 106 LKEQIGV---EITIVKCDN--EGLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDA 174 (376)
T ss_pred HHHHcCc---EEEEEecCC--CCCcCHHHHHHhcCCC------CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEh
Confidence 4566688 999999875 5689999999998643 4578899999999999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
|++.+....+- . -.++|++++++|||+++|.|+|+++++++..+.........+ ..... .........++
T Consensus 175 a~~~g~~~~~~-~-----~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~r~~ 244 (376)
T TIGR01977 175 AQTAGVIPIDM-T-----ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGS-HSALI---DQPSELPDRFE 244 (376)
T ss_pred hhccCccCCCc-h-----hcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCcc-ccccc---cccccchhhcc
Confidence 99877654431 1 137999999999999999999999998875321111100000 00000 00000000111
Q ss_pred CCCC--CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC----CeeEEEEEeecCCCCCCCCCCc
Q 038818 348 LSRR--FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR----NFAVVCFRVLPSASGLGDGKAN 421 (486)
Q Consensus 348 ~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~ 421 (486)
.+.. ...++++.+++.+...|++.+.++..++++++.+.|.+.+++++..+. ..++++|...+..
T Consensus 245 ~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 315 (376)
T TIGR01977 245 SGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGID--------- 315 (376)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCC---------
Confidence 1111 123566677777878888999999999999999999998999988642 3568888874321
Q ss_pred cchHHHHHHHHHHHHhc-CcEEEeeeeE-----------CCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 422 EGANELNRKLLESINAS-GQLYVSHGMV-----------AGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 422 ~~~~~~~~~l~~~l~~~-g~~~~~~~~~-----------~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
...+.+.|.+. |+. +..... .....+|+++ +..+|++||++++++|++
T Consensus 316 ------~~~~~~~L~~~~gi~-v~~g~~~~~~~~~~~g~~~~~~iRis~-~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 316 ------SEEVADILDEKFDIA-TRTGLHCAPLAHKTIGTFATGTIRLSL-GYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ------HHHHHHHHhccCCEE-EEcccccchHHHHHhCCCCCCeEEEec-CCCCCHHHHHHHHHHHhh
Confidence 23566677665 653 332211 1346899998 578899999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=245.69 Aligned_cols=328 Identities=12% Similarity=0.118 Sum_probs=222.4
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-----CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-----NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAI 150 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~ 150 (486)
||++-..++.++.++ +.+..++ |+....+..++.+.++..++++.+++++|.+++ ..++|+|+|+++
T Consensus 2 Yld~a~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-------~v~~t~~~t~a~ 73 (364)
T PLN02651 2 YLDMQATTPIDPRVL-DAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-------EIIFTSGATESN 73 (364)
T ss_pred cccCcCCCCCCHHHH-HHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCCHHHHH
Confidence 556655545444443 3333332 221112223455567777899999999998765 689999999999
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH---HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ---IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~---~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~ 227 (486)
..++..+.....+ ++..|+++...|+++...+. ..|+ +++.+|+++ ++.+|+++|+++|++++
T Consensus 74 ~~~l~~~~~~~~~-------~g~~vl~~~~~h~s~~~~~~~~~~~g~---~v~~v~~~~--~~~~d~~~l~~~i~~~t-- 139 (364)
T PLN02651 74 NLAIKGVMHFYKD-------KKKHVITTQTEHKCVLDSCRHLQQEGF---EVTYLPVKS--DGLVDLDELAAAIRPDT-- 139 (364)
T ss_pred HHHHHHHHHhccC-------CCCEEEEcccccHHHHHHHHHHHhcCC---EEEEEccCC--CCcCCHHHHHHhcCCCc--
Confidence 8888776543211 45678889999998766544 3477 899999875 56899999999997643
Q ss_pred CCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcce
Q 038818 228 GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCC 307 (486)
Q Consensus 228 g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g 307 (486)
.+|++++++|++|.+.|+++|+++|+++|+++|||++++.+....+- . .+ ++|++++++||| ++|.|+|
T Consensus 140 ----~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~-~----~~-~~D~~~~s~hK~-~gp~G~g 208 (364)
T PLN02651 140 ----ALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDV-D----DL-GVDLMSISGHKI-YGPKGVG 208 (364)
T ss_pred ----EEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCc-c----cC-CCCEEEechhhh-CCCCceE
Confidence 47889999999999999999999999999999999999887665431 1 12 689999999998 6899999
Q ss_pred EEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 038818 308 CLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~ 386 (486)
+++++++... ...+.+..+. . . ..+ ..++... ..+++..++..+- ++.+++.++..++++++.+.
T Consensus 209 ~l~v~~~~~~----~l~p~~~g~~-~------~-~~~-~~GT~~~~~~~~l~~al~~~~-~~~~~i~~~~~~l~~~l~~~ 274 (364)
T PLN02651 209 ALYVRRRPRV----RLEPLMSGGG-Q------E-RGR-RSGTENTPLVVGLGAACELAM-KEMDYDEKHMKALRERLLNG 274 (364)
T ss_pred EEEEcCCCCC----CCCccccCCC-c------c-CCc-cCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 9999976331 1122221111 0 0 000 0122221 2345566666654 34578889999999999999
Q ss_pred HhC-CCCeEEecC--CC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-------------
Q 038818 387 VGG-DNRFEIVAP--RN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM------------- 447 (486)
Q Consensus 387 L~~-~~~~~~~~~--~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------------- 447 (486)
|++ +|+++++.+ +. .++++|.+.+.. .+.+.++|.+ ++++.+.
T Consensus 275 l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~L~~---i~v~~g~~c~~~~~~~~~~~ 336 (364)
T PLN02651 275 LRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE---------------GESLLMGLKE---VAVSSGSACTSASLEPSYVL 336 (364)
T ss_pred HHhhCCCEEEECCCCcccCcCCEEEEEeCCCC---------------HHHHHHHhCC---EEEEchhhcCCCCCCcCHHH
Confidence 985 689999875 22 358888875321 2244444432 2332211
Q ss_pred --EC-----CEeEEEEEecCCCCcHHHHH
Q 038818 448 --VA-----GIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 448 --~~-----~~~~lR~~~~~~~tt~~did 469 (486)
+. ..+.+|+|+ +++||++|||
T Consensus 337 ~~~g~~~~~~~~~vR~S~-~~~~t~~did 364 (364)
T PLN02651 337 RALGVPEEMAHGSLRLGV-GRFTTEEEVD 364 (364)
T ss_pred HHcCCChHHhCceEEEEc-CCCCCHHHcC
Confidence 01 136899999 5788988985
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=248.35 Aligned_cols=347 Identities=14% Similarity=0.143 Sum_probs=227.2
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhc-----CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGF-----NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
+.||++-..++.++.++ +.+..++ |+....+..+.......+++++.+++++|.+++ ..++++|+|+
T Consensus 4 ~~yld~aa~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-------~v~~~~g~t~ 75 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVA-EKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-------EIVFTSGATE 75 (402)
T ss_pred cEEeeCCcCCCCCHHHH-HHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCCHHH
Confidence 45788876666555544 3333333 221111112222345566788999999998765 6899999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH---cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI---AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~---~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~ 225 (486)
++..++........ .++..|+++..+|+++..++.. .|+ +++.+|+++ ++.+|+++|++++++.
T Consensus 76 a~~~~l~~l~~~~~-------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~---~v~~v~~~~--~~~~d~~~l~~~l~~~- 142 (402)
T TIGR02006 76 SNNLAIKGIAHFYK-------SKGNHIITSKTEHKAVLDTCRYLEREGF---EVTYLPPKS--NGLIDLEELKAAIRDD- 142 (402)
T ss_pred HHHHHHHHHHHhhc-------CCCCEEEECCCccHHHHHHHHHHHhcCC---EEEEEccCC--CCcCCHHHHHHhcCCC-
Confidence 99887766543111 1567788999999998776543 477 899999875 5689999999988653
Q ss_pred HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
+.+|++++++|++|.+.|+++|+++|+++|+++|||++++.+....+- . . .++|++++++||++ +|.|
T Consensus 143 -----~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~-~----~-~~~D~~~~s~~K~~-gp~G 210 (402)
T TIGR02006 143 -----TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINV-N----E-LKVDLMSISGHKIY-GPKG 210 (402)
T ss_pred -----CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCc-c----c-cCCCEEEEehhhhc-CCCc
Confidence 347889999999999999999999999999999999999876654321 1 1 27999999999975 5999
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC-CCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS-RRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s-r~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l 383 (486)
+|+++++++.... ..+ ....... ...++.+ ... ..+++..+++.+ .++++++.++..++++++
T Consensus 211 ~G~l~~~~~~~~~----~~~-~~~g~~~---------~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l 275 (402)
T TIGR02006 211 IGALYVRRKPRVR----LEA-LIHGGGH---------ERGMRSGTLPTHQIVGMGEAFRIA-KEEMAQDTAHVLALRDRL 275 (402)
T ss_pred eEEEEEccCCCCC----CCc-eecCCCc---------cCCccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence 9999998753311 111 1111000 0011111 111 123444455544 356788889999999999
Q ss_pred HHHHhCCCCeEEecCC--Ce-e--EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-----eE-----
Q 038818 384 QELVGGDNRFEIVAPR--NF-A--VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG-----MV----- 448 (486)
Q Consensus 384 ~~~L~~~~~~~~~~~~--~~-~--~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-----~~----- 448 (486)
++.|++++++++.+++ .. + .++|...+. ..+...+.+.....|..+.+.. .+
T Consensus 276 ~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~-------------~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~lg~ 342 (402)
T TIGR02006 276 LNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEG-------------ESLIMALKDLAVSSGSACTSASLEPSYVLRALGI 342 (402)
T ss_pred HHHHhcCCCEEEeCCccccCCCeEEEEEeCcCH-------------HHHHHhcCCEEEechhhcCCCCCCccHHHHHcCC
Confidence 9999999898887532 22 2 344442110 2222222111112333221110 00
Q ss_pred ---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 449 ---AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 449 ---~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...+++|+|+ ++.+|++|||++++.|+++++++
T Consensus 343 ~~~~~~~~vR~S~-~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 343 NDELAHSSIRFTI-GRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred ChhhcCceEEEEe-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 0136899999 56799999999999999998765
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-28 Score=240.23 Aligned_cols=307 Identities=16% Similarity=0.137 Sum_probs=212.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHH-------HhhcCCC------ccccccChh
Q 038818 44 ESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEML-------SSGFNVV------GFNWMSSPA 110 (486)
Q Consensus 44 ~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l-------~~~~n~~------~~~~~~~~~ 110 (486)
..+|++|.+.+.|...|.++-.- +|.+|.+.+--+---.-+.+.++ ....+.. +..-..++.
T Consensus 28 ~~~p~~g~~~~~i~~~l~~l~~~-----~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~l~~~q~ka~gss~ 102 (444)
T TIGR03531 28 RKIPEEGWDDETIELFLHELSVM-----DTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGDLVAPQPKAAGSSL 102 (444)
T ss_pred CcCCccCCCHHHHHHHHHHHhcC-----CcCCCccccCcCcccceeechhhhhcccceecCCCCcccccccCccccCccH
Confidence 46899999999999888875322 23334432211100000011111 1111111 111224556
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch-HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC-EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt-~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
...+..++.+++++++|.+... .++++++|| +++.+++.+++.+ +.++..|+++..+|+|+.+++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~------~a~~v~~~Tg~al~laL~alr~~--------~~~gd~VI~p~~th~S~~kAi 168 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIK------SAFVVPLATGMSLSLCLSALRHK--------RPKAKYVIWPRIDQKSCIKAI 168 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC------EEEEECCHHHHHHHHHHHHcCCc--------CCCCCEEEEECcChHHHHHHH
Confidence 7889999999999999998431 478899999 7888888776642 012456667778999999999
Q ss_pred HHcCCCCCCeEEEec--CCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 190 QIAGIDPKNFRAIKT--TKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~--d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
.++|+ +++.||+ ++ +++.+|+++|+++|++.+. ..+.+|+.+.+++..|..||+++|+++|++||+|+|+|+
T Consensus 169 ~~~G~---~pv~Vd~~~d~-~~~~iD~e~Le~aIt~~~~--kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDa 242 (444)
T TIGR03531 169 STAGF---EPRVIETVLDG-DELTTDVEDIERAIEEIGP--DNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNN 242 (444)
T ss_pred HHcCC---eEEEeeeeecC-cCCCcCHHHHHHHHHhccC--CCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEEC
Confidence 99999 9999995 33 4689999999999985321 224445555556666789999999999999999999999
Q ss_pred cccchhccCccchhhh-cCC--CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 268 AYAGSACICPEFRHFI-DGI--EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~-~~~--~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
|||... +.....+ .+. ..+|++++|+||++.+|.++|++++++++....... .|....
T Consensus 243 Ayg~~~---~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~---~y~g~~------------- 303 (444)
T TIGR03531 243 AYGLQS---NKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISK---SYPGRA------------- 303 (444)
T ss_pred cCcCcC---hhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHH---hccCCC-------------
Confidence 998633 2222222 222 258999999999999999999999988877643221 121100
Q ss_pred cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCC
Q 038818 345 QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPR 399 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~ 399 (486)
....++.+|+++..+|.+++++++++..++++++.+.|+++. +.+++..|
T Consensus 304 -----~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~ 356 (444)
T TIGR03531 304 -----SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTP 356 (444)
T ss_pred -----CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCC
Confidence 012357889999999999999999999999999999997652 55666444
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=240.15 Aligned_cols=355 Identities=16% Similarity=0.102 Sum_probs=235.8
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhcC---CCc--cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGFN---VVG--FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n---~~~--~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
..||++-..++ .|..+.+.+..++. .+. ..+..+........++++.+++++|.++.. ..++|+|+|+
T Consensus 33 ~iyLd~a~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~------~v~~t~g~t~ 105 (424)
T PLN02855 33 LVYLDNAATSQ-KPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSR------EIVFTRNATE 105 (424)
T ss_pred eEEeeCccccC-CCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCC------EEEEeCCHHH
Confidence 36788755544 33444455544432 121 111223334455567899999999996421 6899999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH----HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL----QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLD 224 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~----~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~ 224 (486)
++..++.......+ .+++.|+++...|++. ...++..|+ +++.+|+++ ++.+|+++|+++|++.
T Consensus 106 al~~i~~~~~~~~~-------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~---~v~~v~~~~--~~~~~~~~l~~~i~~~ 173 (424)
T PLN02855 106 AINLVAYTWGLANL-------KPGDEVILSVAEHHSNIVPWQLVAQKTGA---VLKFVGLTP--DEVLDVEQLKELLSEK 173 (424)
T ss_pred HHHHHHHHhhhhcC-------CCcCEEEECCCccHHHHHHHHHHHHHcCC---EEEEEecCC--CCCcCHHHHHHHhccC
Confidence 97665543210000 1566788898988863 445677788 999999875 3479999999999753
Q ss_pred HHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC
Q 038818 225 IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL 304 (486)
Q Consensus 225 ~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~ 304 (486)
+.+|++++++|++|.+.|+++|+++|+++|+++++|++|+.+....+ .. . .++|++++++||+ ++|.
T Consensus 174 ------t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~-~~----~-~~~d~~~~s~~K~-~gp~ 240 (424)
T PLN02855 174 ------TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVD-VQ----T-LGADFLVASSHKM-CGPT 240 (424)
T ss_pred ------ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCC-ch----h-cCCCEEEeecccc-cCCC
Confidence 34889999999999999999999999999999999999976544332 11 1 1589999999995 5688
Q ss_pred cceEEEeeCchHHHHHhcCCcccccCccCCCC---CccCCC--CccccCC-CC-CCchHHHHHHHHhchHHHHHHHHHHH
Q 038818 305 DCCCLWVKNPNALIKALSTNPEFLRNKASDSK---QVVDYK--DWQITLS-RR-FRALKLWLVLRSFGVANLRNFLRSHV 377 (486)
Q Consensus 305 ~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~---~~~~~~--~~~~~~s-r~-~~~l~~~~~l~~~g~~g~~~~~~~~~ 377 (486)
|+|+++++++. +. .+ +++..+...... ....+. ...++.| .. ...+++..++..+...|++++.++..
T Consensus 241 G~G~l~~~~~~-~~-~~---~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~ 315 (424)
T PLN02855 241 GIGFLWGKSDL-LE-SM---PPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEV 315 (424)
T ss_pred ccEEEEEchhh-hh-cC---CCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999998652 22 11 222211100000 000000 0011221 11 12245666677666668889999999
Q ss_pred HHHHHHHHHHhCCCCeEEecCC------CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeee---
Q 038818 378 RMAQLFQELVGGDNRFEIVAPR------NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGM--- 447 (486)
Q Consensus 378 ~~a~~l~~~L~~~~~~~~~~~~------~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~--- 447 (486)
++++++++.|+++++++++.+. ..++++|.+.... ...+.+.|.++ |+. +..+.
T Consensus 316 ~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~---------------~~~v~~~L~~~~gI~-v~~g~~c~ 379 (424)
T PLN02855 316 ELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIH---------------PTDLSTFLDQQHGVA-IRSGHHCA 379 (424)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcC---------------HHHHHHHhcccCCEE-Eechhhhh
Confidence 9999999999999999998642 2478888875321 23566666666 653 33211
Q ss_pred ------ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 448 ------VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 448 ------~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..-..++|+|+ ++.+|++|||+++++|++++..+
T Consensus 380 ~~~~~~~g~~~~iRiS~-~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 380 QPLHRYLGVNASARASL-YFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred HHHHHHhCCCCeEEEEe-ccCCCHHHHHHHHHHHHHHHHHH
Confidence 11135799999 67889999999999999998765
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=238.48 Aligned_cols=343 Identities=13% Similarity=0.066 Sum_probs=232.3
Q ss_pred eecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHH
Q 038818 78 AYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAA 157 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a 157 (486)
.|.+++...+..+.+.+...... ..++...++.+++++++++++|.+... ..++++|||+++..++.+.
T Consensus 2 ~~~~~~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~------~~~~~~~~t~al~~~~~~~ 70 (356)
T cd06451 2 LLIPGPSNVPPRVLKAMNRPMLG-----HRSPEFLALMDEILEGLRYVFQTENGL------TFLLSGSGTGAMEAALSNL 70 (356)
T ss_pred cccCCCcCCCHHHHHHhCCCccC-----CCCHHHHHHHHHHHHHHHHHhcCCCCC------EEEEecCcHHHHHHHHHHh
Confidence 35566666666666666543211 235566777888999999999995432 5788999999987777654
Q ss_pred HHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEE
Q 038818 158 RDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLC 235 (486)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv 235 (486)
.. ++..|+++...|++ +...++..|+ +++.+|+++ ++.+|++++++.+++. .|.+|+
T Consensus 71 ~~-----------~g~~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~~~~~l~~~i~~~-----~~~~v~ 129 (356)
T cd06451 71 LE-----------PGDKVLVGVNGVFGDRWADMAERYGA---DVDVVEKPW--GEAVSPEEIAEALEQH-----DIKAVT 129 (356)
T ss_pred CC-----------CCCEEEEecCCchhHHHHHHHHHhCC---CeEEeecCC--CCCCCHHHHHHHHhcc-----CCCEEE
Confidence 32 45667777778887 4577888999 999999875 4689999999999751 134788
Q ss_pred eecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 236 ATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 236 ~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
+++++|++|.+.|+++|.++|+++|+++++|++|+.+....+. . . .++|.++.++|||+++|.|+|+++++++
T Consensus 130 i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~-~----~-~~~d~~~~s~~K~l~~p~g~G~l~~~~~- 202 (356)
T cd06451 130 LTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRM-D----E-WGVDVAYTGSQKALGAPPGLGPIAFSER- 202 (356)
T ss_pred EeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccc-c----c-cCccEEEecCchhccCCCCcceeEECHH-
Confidence 8899999999999999999999999999999998644332211 1 1 1689999999999999999999999765
Q ss_pred HHHHHhc--C-CcccccCccCCCCCccCCCCcc-ccC-CCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 316 ALIKALS--T-NPEFLRNKASDSKQVVDYKDWQ-ITL-SRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 316 ~~~~~~~--~-~~~y~~~~~~~~~~~~~~~~~~-~~~-sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
....... . ...|..... ...+.... ... +-.. ...++..++..+...+++++.++..++++++.+.|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 277 (356)
T cd06451 203 ALERIKKKTKPKGFYFDLLL-----LLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA 277 (356)
T ss_pred HHHHHHhcCCCCceeecHHH-----HHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 1 111111000 00000000 011 1111 1235556677677788899999999999999999998
Q ss_pred CCCeEEecCCC--eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecCCCCcHH
Q 038818 390 DNRFEIVAPRN--FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGATLTEDR 466 (486)
Q Consensus 390 ~~~~~~~~~~~--~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~~~tt~~ 466 (486)
. ++++..++. .+.+.+...+.. ....++.+.|.++ |+.+.++.......++|++++ +.++++
T Consensus 278 ~-g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~-~~~~~e 342 (356)
T cd06451 278 L-GLKLLAKPELRSPTVTAVLVPEG-------------VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHM-GEATRE 342 (356)
T ss_pred c-CCeeccCcccCCCceEEEECCCC-------------CCHHHHHHHHHHhCCEEEecccccccCCEEEEecC-CCCCHH
Confidence 7 888875432 344433222221 0124567777777 774433222223458999995 568888
Q ss_pred HHHHHHHHHHHHH
Q 038818 467 HVIAAWKVVQEKL 479 (486)
Q Consensus 467 did~~i~~l~~~~ 479 (486)
||++++++|++++
T Consensus 343 ~v~~~~~~l~~~~ 355 (356)
T cd06451 343 DVLGVLSALEEAL 355 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=234.37 Aligned_cols=343 Identities=13% Similarity=0.131 Sum_probs=223.1
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-----CCCccccccCh-hhHHHHHHHHHHHHHHcCC-CCCCccCCCcceEEcCCchH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-----NVVGFNWMSSP-AATELENIVMDWLGEMLKL-PKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~-~~~~le~~~~~~l~~l~g~-~~~~~~~~~~~~~~t~ggt~ 148 (486)
||++-.+++.++. +.+.+..++ |+.. .+..+. ....+++ .+..+.+.+|. +++ +.++|+|+|+
T Consensus 2 yld~aa~~~~~~~-v~~~~~~~~~~~~~n~~~-~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~-------~i~~t~g~te 71 (382)
T TIGR03403 2 YLDNNATTMLDPK-VKELMDPFFCDIYGNPNS-LHQFGTATHPAIAE-ALDKLYKGINARDLD-------DIIITSCATE 71 (382)
T ss_pred cccCcCCCCCCHH-HHHHHHHHHHhcCcCCcc-ccHHHHHHHHHHHH-HHHHHHHHcCcCCCC-------eEEEeCCHHH
Confidence 5666555554443 444444433 2221 111222 2334444 44555666776 333 7899999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH---HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA---QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~---~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~ 225 (486)
++..++.......+.+ .++..|+++...|+++...+ +..|+ +++.+|+++ ++.+|+++|++++++.+
T Consensus 72 al~~~~~~~~~~~~~~-----~~~~~vi~~~~e~ps~~~~~~~~~~~G~---~v~~v~~~~--~g~~d~~~l~~~i~~~t 141 (382)
T TIGR03403 72 SNNWVLKGVYFDEILK-----GGKNHIITTEVEHPAVRATCAFLESLGV---EVTYLPINE--QGTITAEQVREAITEKT 141 (382)
T ss_pred HHHHHHHHHHHhhccc-----CCCCEEEEcCCccHHHHHHHHHHHHCCC---EEEEEecCC--CCCCCHHHHHHhcccCC
Confidence 9887776542110000 03457888989998876654 45677 999999985 46899999999987543
Q ss_pred HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
.+|++++++|++|.+.|+++|.++|+++|+++|+|++++.+....+. .. .++|++++++||| ++|.|
T Consensus 142 ------~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~-~~-----~~~D~~~~s~~K~-~gp~G 208 (382)
T TIGR03403 142 ------ALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDV-QK-----AGVDFLSFSAHKF-HGPKG 208 (382)
T ss_pred ------eEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCc-cc-----cCCCEEEEcchhh-CCCCc
Confidence 47889999999999999999999999999999999999765543321 11 2799999999998 56889
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc-hHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA-LKLWLVLRSFGVANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~-l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~ 384 (486)
+|++++|+...+ .+ .+...... .... .++-...+ +++..+++.. .+.++...++..++++++.
T Consensus 209 ~g~l~vr~~~~~------~p-~~~g~~~~----~~~~----~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~ 272 (382)
T TIGR03403 209 VGGLYIRKGVEL------TP-LFHGGEHM----GGRR----SGTLNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLE 272 (382)
T ss_pred eEEEEECCCCCC------CC-cccCCCCC----CCcc----cCCcChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 999999876321 12 22111000 0000 11111111 2444455433 3457777888999999999
Q ss_pred HHHhCCCCeEEecCC--C-eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee--------------
Q 038818 385 ELVGGDNRFEIVAPR--N-FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-------------- 447 (486)
Q Consensus 385 ~~L~~~~~~~~~~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------------- 447 (486)
+.|+++++++++.++ . .+++.|.+.... .+.+...|.++|+..-.+..
T Consensus 273 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~ 337 (382)
T TIGR03403 273 DALLELPDVFVVGDREHRVPNTILISIKGVE---------------GEAMLWDLNKAGIAASTGSACASEDLEANPVMVA 337 (382)
T ss_pred HHHhcCCCEEEECCCCCCcCCEEEEEeCCCC---------------HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHH
Confidence 999999999998653 2 346677765321 23455556667764322110
Q ss_pred E--C---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 448 V--A---GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 448 ~--~---~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
. . ..+.+|+|++ +.+|++|||+++++|+++++++.
T Consensus 338 ~g~~~~~~~~~iR~s~~-~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 338 IGADKELAHTAIRLSLS-RFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred cCCChHHhCeeEEEECC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1357999995 68899999999999999987753
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=237.56 Aligned_cols=318 Identities=16% Similarity=0.156 Sum_probs=223.3
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..+..+....++-+++++.+++++|.+++. ..++++++|+++..++....... + ++..|+++...|
T Consensus 33 ~~~~~~~~~~~~~~~~r~~la~~lg~~~~~------~v~~~~~~t~a~~~~~~~l~~~~-~-------~g~~vl~~~~~~ 98 (371)
T PF00266_consen 33 GVSHRSREFAEILEEAREALAKLLGAPPDE------EVVFTSNGTEALNAVASSLLNPL-K-------PGDEVLVTSNEH 98 (371)
T ss_dssp SSSTTSHHHHHHHHHHHHHHHHHHTSSTTE------EEEEESSHHHHHHHHHHHHHHHG-T-------TTCEEEEEESSH
T ss_pred cccchhhhhhHHHHHHHHHHHHhcCCcccc------ccccccccchhhhhhhhcccccc-c-------cccccccccccc
Confidence 344455666777788999999999998832 78999999998877666664321 1 566788888999
Q ss_pred hHHH----HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH
Q 038818 183 SALQ----KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR 258 (486)
Q Consensus 183 ~s~~----~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~ 258 (486)
++.. ..++..|+ +++.+|.+. ++.+|+++++++|.+++ .+|++++.+|.+|.+.|+++|+++||+
T Consensus 99 ~s~~~~~~~~~~~~g~---~v~~i~~~~--~~~~~~~~~~~~l~~~~------~lv~~~~~~~~tG~~~pi~~I~~~~~~ 167 (371)
T PF00266_consen 99 PSNRYPWEEIAKRKGA---EVRVIPADP--GGSLDLEDLEEALNPDT------RLVSISHVENSTGVRNPIEEIAKLAHE 167 (371)
T ss_dssp HHHHHHHHHHHHHTTE---EEEEEEEGT--TSSCSHHHHHHHHHTTE------SEEEEESBETTTTBBSSHHHHHHHHHH
T ss_pred cccccccccccccchh---hhccccccc--cchhhhhhhhhhhcccc------ceEEeecccccccEEeeeceehhhhhc
Confidence 9865 44456788 999999876 45999999999997554 489999999999999999999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCccc--ccCccCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEF--LRNKASDSK 336 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y--~~~~~~~~~ 336 (486)
+|++++||++++.+....+- .. + ++|.+++++|| +++|.|+|+++++++.. .+......++ ....... .
T Consensus 168 ~~~~~~vD~~~~~g~~~id~-~~----~-~~D~~~~s~~K-l~gp~G~g~l~v~~~~~-~~~~p~~~~~~~~~~~~~~-~ 238 (371)
T PF00266_consen 168 YGALLVVDAAQSAGCVPIDL-DE----L-GADFLVFSSHK-LGGPPGLGFLYVRPEAI-ERLRPAKPGGGYLDFPSLQ-E 238 (371)
T ss_dssp TTSEEEEE-TTTTTTSS--T-TT----T-TESEEEEESTS-TTSSSTEEEEEEEHHHH-HHHHTSSSSSSTTTHHHHH-H
T ss_pred cCCceeEechhccccccccc-cc----c-ccceeeecccc-cCCCCchhhheehhhhh-hccccccccccccccccch-h
Confidence 99999999999887765542 21 1 79999999999 88899999999998643 2221111111 1000000 0
Q ss_pred CccCCCCccccCCCC-C-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC----CCeeEEEEEeec
Q 038818 337 QVVDYKDWQITLSRR-F-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP----RNFAVVCFRVLP 410 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~-~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~~ 410 (486)
.......+.++.|.. . ..+++..+++.+...|++++.++..++++++.+.|+++++++++.+ ...++++|.+.+
T Consensus 239 ~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 318 (371)
T PF00266_consen 239 YGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPG 318 (371)
T ss_dssp HCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETT
T ss_pred cccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecC
Confidence 000001111222211 1 1245566777777788999999999999999999999999998663 235789998854
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC---------CEeEEEEEecCCCCcHHHHHHH
Q 038818 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA---------GIYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---------~~~~lR~~~~~~~tt~~did~~ 471 (486)
.. .+.+.+.|.++|+.+.. +... -.+++|+|+ ++++|++|||+|
T Consensus 319 ~~---------------~~~~~~~L~~~~I~~~~-G~~~~~~~~~~~~~~~~iRvS~-~~~nt~~dv~~l 371 (371)
T PF00266_consen 319 SD---------------ADDVVKYLEERGIAVST-GSACAGPSLDILGMGGVIRVSL-HYYNTEEDVDRL 371 (371)
T ss_dssp SS---------------HHHHHHHHHHHTEEEEE-STTTCHHHHHHHHTTTEEEEE--GTTSSHHHHHHH
T ss_pred CC---------------HHHHHHHHhhcCEEEec-cCcccHHHHHHhCCCCEEEEec-cCCCCHHHHhhC
Confidence 31 24566677777764333 2111 127899997 578889999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-26 Score=228.55 Aligned_cols=317 Identities=15% Similarity=0.109 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++++.+++++|.+. .++++|||++|..++..... ++..|+++..+|++...+++.
T Consensus 62 ~~~~~~l~~~lA~~~g~~~---------~~~~~g~t~a~~~al~~l~~-----------~gd~Vlv~~~~h~s~~~~~~~ 121 (387)
T PRK09331 62 KPPIADFHEDLAEFLGMDE---------ARVTHGAREGKFAVMHSLCK-----------KGDYVVLDGLAHYTSYVAAER 121 (387)
T ss_pred ChHHHHHHHHHHHHhCCCc---------EEEeCCHHHHHHHHHHHhcC-----------CCCEEEECCCchHHHHHHHHH
Confidence 3345667788999999853 57899999999887776543 667888999999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHH-CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ-AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~-~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
.|+ +++.+|++.+.++.+|+++|+++|++..+ .+..+.+|+++++++++|.+.|+++|+++|++||+++|||+||+
T Consensus 122 ~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 122 AGL---NVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred cCC---EEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 999 99999983222578999999999986422 12346789999999999999999999999999999999999998
Q ss_pred chhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 271 GSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
.+.+..+. .. .++|.++.++|||+++|.++|+++++++ .+........+|..... . .+.++.
T Consensus 199 ~g~~~~~~-~~-----~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~~~-------~----~~~~~~ 260 (387)
T PRK09331 199 VGRMPVDG-KK-----LGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVKEV-------E----LLGCTL 260 (387)
T ss_pred cCCcCCCH-HH-----cCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCcccce-------e----eeceec
Confidence 76544332 11 1689999999999999999999888754 33322222222221100 0 011111
Q ss_pred C-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 351 R-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 351 ~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
+ ..+..++.++..+ .+. .+..++..++++++++.|+++++++++.+ ...+++.+....... . .......
T Consensus 261 ~~~~~~~~~aal~~~-~~~-~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~---~---~~~~~~~ 332 (387)
T PRK09331 261 RGAPLVTLMASFPHV-VER-VKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDE---I---AKKHKRR 332 (387)
T ss_pred CchHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhH---H---hhhcccc
Confidence 1 1233444444433 122 23456678899999999999999998853 234566565431100 0 0000111
Q ss_pred HHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...+.+.|.++|+..+.+ .....+|+..+ ..+++|+++++++|+++.+++
T Consensus 333 ~~~~~~~L~~~gI~~~~~---~~~~i~ri~~~--g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 333 GFFLYEELKKRGIHGIKP---GATKEFKLSTY--GLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred chhHHHHHHHcCceEEcc---CCceEEEEEec--cCCHHHHHHHHHHHHHHHHhc
Confidence 245777787788752222 22446777664 357889999999999988764
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=236.03 Aligned_cols=370 Identities=13% Similarity=0.042 Sum_probs=230.7
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCcccccc-----ChhhHHHHHHHHHHHHHHcCC
Q 038818 54 ETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMS-----SPAATELENIVMDWLGEMLKL 128 (486)
Q Consensus 54 ~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~-----~~~~~~le~~~~~~l~~l~g~ 128 (486)
.+||+++...-.++.....+-..++-...+...|.++.+..... .....|.. .....++..++.+++++++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~ 79 (398)
T cd00613 2 TEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILEN--EFYTAYTPYQPEISQGRLQALFELQTMLCELTGM 79 (398)
T ss_pred HHHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccc--cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC
Confidence 37888888742233222111133444333455566665554443 11122222 455678889999999999998
Q ss_pred CCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC----CCCCCeEEEec
Q 038818 129 PKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG----IDPKNFRAIKT 204 (486)
Q Consensus 129 ~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G----~g~~~v~~v~~ 204 (486)
+.+ ..+++.+|+.+...++..++... .++++|+++...|.+...++..+| . +++.+|+
T Consensus 80 ~~~-------~v~~~~~g~~~~~~~~~~~~~~~--------~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~---~~~~v~~ 141 (398)
T cd00613 80 DVA-------NASLQDEATAAAEAAGLAAIRAY--------HKRNKVLVPDSAHPTNPAVARTRGEPLGI---EVVEVPS 141 (398)
T ss_pred Ccc-------ceeccCchHHHHHHHHHHHHhcc--------cCCCEEEEcCccCcchHHHHHHhcccCCc---EEEEecc
Confidence 754 45566655555444544443320 036788899999999988888887 6 8899998
Q ss_pred CCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc-hHHHHHHHHhCceEEeeccccchhccCccchhhh
Q 038818 205 TKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL-GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFI 283 (486)
Q Consensus 205 d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl-~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~ 283 (486)
+. ++.+|+++|++++.++ +.+|+++.++ ++|.+.|+ ++|+++|++||+|+++|++++.+....+..
T Consensus 142 ~~--~~~~d~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~---- 208 (398)
T cd00613 142 DE--GGTVDLEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPG---- 208 (398)
T ss_pred CC--CCCcCHHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChH----
Confidence 64 4589999999988643 3467777775 68999885 999999999999999999986544332211
Q ss_pred cCCCCCCceeeccccccCCCC-----cceEEEeeCchHHHHHhcCCcccccCccC-CCCCccCCC----CccccCCC---
Q 038818 284 DGIEGADSFSLNAHKWFFTTL-----DCCCLWVKNPNALIKALSTNPEFLRNKAS-DSKQVVDYK----DWQITLSR--- 350 (486)
Q Consensus 284 ~~~~~aDsi~~~~hK~l~~p~-----~~g~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~----~~~~~~sr--- 350 (486)
..++|+++.++|||+ .|. ++|+++++++ ... .+.....+...... ......... ....+.+.
T Consensus 209 --~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~ 283 (398)
T cd00613 209 --EYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKE-LVR-FLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNI 283 (398)
T ss_pred --HcCCCEEEeeccccC-CCCCCCCCceeEEEEhhh-hHh-hCCCCeeccccccCCCcceEEecccchhhcccccccccc
Confidence 126999999999999 664 4667777654 222 22111000000000 000000000 00000111
Q ss_pred ----CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 351 ----RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 351 ----~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
...+..+|.++..++.++++++.++..++++++++.|+++++......+..++++|++.... +.
T Consensus 284 ~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~------------~~ 351 (398)
T cd00613 284 CTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLY------------GI 351 (398)
T ss_pred eecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcc------------hH
Confidence 11224566677778889999999999999999999999886544222344556677654210 12
Q ss_pred HHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
...++.+.|.++|+.+ ....+.+...+|+++ +..+|++|||+++++|
T Consensus 352 ~~~~~~~~L~~~gi~~-~~~~~~~~~~lRis~-~~~~t~edid~~~~~L 398 (398)
T cd00613 352 RAEDLAKALIDGGFHA-PTMYLPVDGTLMIEP-TETETKEELDALLEAL 398 (398)
T ss_pred HHHHHHHhhhhcCccc-cccccCCCCeEEEEc-CCCCCHHHHHHHHHhC
Confidence 2346777777778742 221123457899998 6788999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=233.73 Aligned_cols=342 Identities=13% Similarity=0.144 Sum_probs=226.5
Q ss_pred cceecCCCCCHHHHHHHHHHhhc----CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF----NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
||++-.+++.+..++ +.+..++ .+....+..+.....+..++++.+++++|.+++ .+++++|+|+++.
T Consensus 3 yld~a~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-------~i~~~~g~t~a~~ 74 (381)
T PRK02948 3 YLDYAATTPMSKEAL-QTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ-------GIYFTSGGTESNY 74 (381)
T ss_pred eccCCCCCCCCHHHH-HHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCcHHHHHH
Confidence 555555545444443 3332222 222233444555667778899999999998765 6889999999998
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH---HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA---QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~---~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
.++.+...... .++.+|+++...|+|+...+ +..|+ +++.+|+++ ++.+|+++|++++++.
T Consensus 75 ~~~~~~~~~~~-------~~g~~vv~~~~~h~s~~~~~~~~~~~g~---~v~~v~~~~--~~~~d~~~l~~~l~~~---- 138 (381)
T PRK02948 75 LAIQSLLNALP-------QNKKHIITTPMEHASIHSYFQSLESQGY---TVTEIPVDK--SGLIRLVDLERAITPD---- 138 (381)
T ss_pred HHHHHHHHhcc-------CCCCEEEECCcccHHHHHHHHHHHhCCC---EEEEEeeCC--CCCCCHHHHHHhcCCC----
Confidence 88776653210 14567888999999876654 55577 999999875 4689999999988643
Q ss_pred CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceE
Q 038818 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~ 308 (486)
+.+|++++++|++|.+.|+++|.++|+++|+++|||++++.+....+ .. . .++|+++.++||++ +|.|+|+
T Consensus 139 --~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~-~~----~-~~~d~~~~s~~K~~-gp~G~G~ 209 (381)
T PRK02948 139 --TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPID-VF----E-MGIDSLSVSAHKIY-GPKGVGA 209 (381)
T ss_pred --CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccC-cc----c-CCCCEEEecHHhcC-CCCcEEE
Confidence 35899999999999999999999999999999999998865543222 11 1 26999999999976 5889999
Q ss_pred EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC-CCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 038818 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL-SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~ 386 (486)
++++++..+. + ...... ... .++. +-. ....++..++..+ .++.++..++..++++++.+.
T Consensus 210 l~~~~~~~~~------~-~~~~~~-------~~~--~~~~~t~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~ 272 (381)
T PRK02948 210 VYINPQVRWK------P-VFPGTT-------HEK--GFRPGTVNVPGIAAFLTAAENI-LKNMQEESLRFKELRSYFLEQ 272 (381)
T ss_pred EEEcCCCCCC------C-cccCCC-------CCC--CcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9987652111 0 000000 000 0111 111 1223344444433 256788889999999999999
Q ss_pred HhCCCCeEEecC--CC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee----E---------
Q 038818 387 VGGDNRFEIVAP--RN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM----V--------- 448 (486)
Q Consensus 387 L~~~~~~~~~~~--~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----~--------- 448 (486)
|+++ ++++... +. ..++.|...... ...+...|.++|+.+-.+.. +
T Consensus 273 L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~ 336 (381)
T PRK02948 273 IQTL-PLPIEVEGHSTSCLPHIIGVTIKGIE---------------GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLA 336 (381)
T ss_pred HhcC-CCCEEEeCCCccCcCCEEEEEeCCCC---------------HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHH
Confidence 9987 5554321 11 235666654311 23345556667774332110 0
Q ss_pred ------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 449 ------AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 449 ------~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
....++|++++ +.+|++|+|+++++|+++.+++-+
T Consensus 337 ~~~~~~~~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 337 IGKTYEEAKQFVRFSFG-QQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred cCCChHHhCceEEEEcC-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 12468999985 688889999999999998877643
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=226.05 Aligned_cols=350 Identities=15% Similarity=0.134 Sum_probs=225.1
Q ss_pred CCCCcceecCCCCCHHHHHHH---HHHhhc-CCCccccccChhhH-HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCc
Q 038818 72 QSPYYFAYFPSSGSIAGFLGE---MLSSGF-NVVGFNWMSSPAAT-ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT 146 (486)
Q Consensus 72 ~~p~~~~~~~~~~~~~~~~~~---~l~~~~-n~~~~~~~~~~~~~-~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~gg 146 (486)
..|-|+++...++..+.++.. ++..++ |+... ..+..+. .+| +.++.+|+|+|.++. +++||+|+
T Consensus 42 ~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E-~aR~~VAklInAd~~-------dIiFts~A 111 (428)
T KOG1549|consen 42 TRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVE-AAREQVAKLINADPS-------DIVFTSGA 111 (428)
T ss_pred CccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHH-HHHHHHHHHhCCCCC-------cEEEeCCc
Confidence 467788888777777776544 334444 33322 1222233 355 579999999999987 69999999
Q ss_pred hHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc---CCCCCCeEEEecCCCCCcccCHHHHHHHHHH
Q 038818 147 CEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA---GIDPKNFRAIKTTKSSSFTLTPESLQAAIDL 223 (486)
Q Consensus 147 t~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~---G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~ 223 (486)
||||.+++....... . . + .+..|++...+|.|+...++.+ |+ .|+++|++. ++..|.+.+++.|++
T Consensus 112 TEs~Nlvl~~v~~~~-~---~-~-~~k~iitl~~eH~~v~~s~~~l~~~g~---~Vt~lpv~~--~~~~d~~~~~~~i~~ 180 (428)
T KOG1549|consen 112 TESNNLVLKGVARFF-G---D-K-TKKHIITLQTEHPCVLDSCRALQEEGL---EVTYLPVED--SGLVDISKLREAIRS 180 (428)
T ss_pred hHHHHHHHHHhhccc-c---c-c-ccceEEEecccCcchhHHHHHHHhcCe---EEEEeccCc--cccccHHHHHHhcCC
Confidence 999987766532211 1 1 1 2227888889999998887766 77 999999984 579999999999998
Q ss_pred HHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC
Q 038818 224 DIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT 303 (486)
Q Consensus 224 ~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p 303 (486)
+++ +|.+.+.++..|.+.|++||+++|+++|+.+|+|+||+.+....+- +.+ ++|.+++++|||++.|
T Consensus 181 ~T~------lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV-~el-----n~D~~s~s~HK~ygp~ 248 (428)
T KOG1549|consen 181 KTR------LVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDV-QEL-----NADFLSISAHKIYGPP 248 (428)
T ss_pred Cce------EEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccH-HHc-----CchheeeecccccCCC
Confidence 764 8999999999999999999999999999999999999988776642 322 8999999999998877
Q ss_pred CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC--CchHHHHHHHHhc--hHHHHHHHHHHHHH
Q 038818 304 LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF--RALKLWLVLRSFG--VANLRNFLRSHVRM 379 (486)
Q Consensus 304 ~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~--~~l~~~~~l~~~g--~~g~~~~~~~~~~~ 379 (486)
. +|++|+|.+.. .....|++.++... . ++..+... .++.+-.+.+... ..+...++ .++
T Consensus 249 ~-iGaLYvr~~~~---~~~~~p~~~GGgq~-----r-----~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~---~~~ 311 (428)
T KOG1549|consen 249 G-IGALYVRRKRP---RLRVEPPLSGGGQE-----R-----GLRSGTVATPLAVGLGSAAEFVNKEMAYDEAII---KRL 311 (428)
T ss_pred c-ceEEEEccCCC---cccccCcccCCccc-----c-----ccccCCcCchhhhhhHHHHHHHHhhcchhHHHH---HHH
Confidence 5 99999997211 22445555544321 0 11111111 1222333333321 12222222 335
Q ss_pred HHHHHHHHh-CCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee----e----
Q 038818 380 AQLFQELVG-GDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG----M---- 447 (486)
Q Consensus 380 a~~l~~~L~-~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~---- 447 (486)
...+...+. ..+...+.+.+. -+.+.|.+.... .. .+-..+.+....+|..+.+.. .
T Consensus 312 ~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--------g~---~~~~~~~~~~l~s~~a~~~~~~epsy~l~~ 380 (428)
T KOG1549|consen 312 SEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVE--------GE---SLLMDLKDVALSSGSACTSASLEPSYVLRA 380 (428)
T ss_pred HHHHHHHHhhhCchhhccCCcccccccceeeeccccc--------Cc---chhhhhhhhhhcccchhhcCCCCcchhhhh
Confidence 666666653 355555544321 123333333111 00 011122222233343322211 0
Q ss_pred -----ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 448 -----VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 448 -----~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
-..+..+||++. .+|+++|++++++.+.+.+..+.
T Consensus 381 ~G~~~~~~~~~iRis~G-~y~t~~di~~~~~~i~~~v~~~~ 420 (428)
T KOG1549|consen 381 IGVDEDLAHSSIRISIG-RYTTEEDIDYLVDAIKKLVSLLR 420 (428)
T ss_pred cCcchhhhcceeEEeee-eeCcHHHHHHHHHHHHHHHHhcc
Confidence 013678999995 68888899999999999887654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=245.29 Aligned_cols=390 Identities=13% Similarity=0.009 Sum_probs=256.3
Q ss_pred CCCC--CCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcC-CCccc---cccChhhHHHHHHH
Q 038818 45 SAPY--NPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFN-VVGFN---WMSSPAATELENIV 118 (486)
Q Consensus 45 ~~p~--~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n-~~~~~---~~~~~~~~~le~~~ 118 (486)
..|. .-.|+.++++.+.++-.++....++-.-+|-+ +.-+-+.+.+.....-. .+.+. -++..+..++-.++
T Consensus 496 ~~p~f~~~~se~~~~r~~~~l~~~~~~~~~~~~plgsc--tmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~ 573 (993)
T PLN02414 496 THPIFNQYHSEHELLRYLHRLQNKDLSLVHSMIPLGSC--TMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDL 573 (993)
T ss_pred cCcccccccCHHHHHHHHHHHhhcccccccCCccCccc--ccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHH
Confidence 4455 23688999999998765554443332233321 11111112222221100 11222 23455667788899
Q ss_pred HHHHHHHcCCCCCCccCCCcceEEcCCch----HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 119 MDWLGEMLKLPKSFLFSGTGGGVIQGTTC----EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 119 ~~~l~~l~g~~~~~~~~~~~~~~~t~ggt----~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
++++++++|++ ..+|+++++ ++++.++..... ..|.. .+.+|+++..+|.++...+...|+
T Consensus 574 r~~la~i~g~~---------~v~f~pnaga~ge~a~~~vi~~~~~----~~Gd~--~r~~vli~~~aH~sn~a~a~~~G~ 638 (993)
T PLN02414 574 GDLLCEITGFD---------SFSLQPNAGAAGEYAGLMVIRAYHL----SRGDH--HRNVCIIPVSAHGTNPASAAMCGM 638 (993)
T ss_pred HHHHHHHhCCC---------eEEEcCCCcHHHHHHHHHHHHHHHh----ccCCC--CCCEEEeCCCcCccCHHHHHHCCC
Confidence 99999999993 578999888 666666555432 11211 355899999999999999999999
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhc
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~ 274 (486)
+++.||+|+ +|.+|+++|+++|++.+. ...+|++++++|..|.++||++|+++|+++|+.++||+|+..+..
T Consensus 639 ---~vv~v~~d~--~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~ 710 (993)
T PLN02414 639 ---KIVVVGTDA--KGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQV 710 (993)
T ss_pred ---EEEEeccCC--CCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhcc
Confidence 999999985 569999999999985331 245899999999999999999999999999999999999976543
Q ss_pred cCccchhhhcCCCCCCceeeccccccCCCCc-----ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-----CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-----~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
....... -++|+++++.||||++|.| +|++++++. + ....|+....... +..........|+
T Consensus 711 ~l~~p~~-----~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~--L---~p~lPg~~v~~~~---~~~~r~~~s~iGt 777 (993)
T PLN02414 711 GLTSPGF-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--L---APFLPSHPVVPTG---GIPRPEKTQPLGT 777 (993)
T ss_pred CcCCccc-----cCCCEEEecCCccCCcCcccCCCCeeeEEEchh--h---cccCCCCccccCC---CcccccCCCCcCC
Confidence 2211111 2899999999999997765 999988863 2 1223333221110 0000000011233
Q ss_pred CCC-------CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCeeEEEEEeecCCCCCCCCCC
Q 038818 350 RRF-------RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFAVVCFRVLPSASGLGDGKA 420 (486)
Q Consensus 350 r~~-------~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~~~~~~~~~~~~~~ 420 (486)
++. .++..|..++.+|.+|+++..++...+++|++++|.+..++...++ +..+.+.+.+.+..
T Consensus 778 ~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~-------- 849 (993)
T PLN02414 778 ISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFK-------- 849 (993)
T ss_pred ccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccc--------
Confidence 332 2246788899999999999999999999999999987544433333 33445555544210
Q ss_pred ccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 421 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.........+.++|.+.|+..... .+...+.+|++.+ ...+++|||+++++|+.+.+++.
T Consensus 850 -~~~g~~~~di~krL~d~Gihapt~-~~pv~~~lmiepT-E~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 850 -NTAGIEPEDVAKRLMDYGFHAPTM-SWPVPGTLMIEPT-ESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred -cccCCCHHHHHHHHHHcCcEEeee-ccccCCEEEEEee-eeCCHHHHHHHHHHHHHHHHHHH
Confidence 000011245666777778742221 2344678999996 57788899999999999987765
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=231.80 Aligned_cols=352 Identities=13% Similarity=0.074 Sum_probs=223.7
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhc----CCCccccccC-hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGF----NVVGFNWMSS-PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~-~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
..||++...++. |..+.+.+..++ ++....+..+ .....++.+..+ + +++|.+++ ..++++|+|+
T Consensus 28 ~iyld~~a~g~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~-------~v~~~~~~t~ 97 (406)
T TIGR01814 28 VIYLDGNSLGLM-PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKED-------EVVVMNTLTI 97 (406)
T ss_pred cEEecCCCcCcC-cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCC-------cEEEeCCchH
Confidence 457776655554 555555555443 2222122221 122344444333 5 89998765 6899999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----HHHHcCCCCCCe----EEEecCCCCCcccCHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK----AAQIAGIDPKNF----RAIKTTKSSSFTLTPESLQAA 220 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~----a~~~~G~g~~~v----~~v~~d~~~~~~~d~~~L~~~ 220 (486)
++..++...... +.++.+|+++..+|.|... .++..|+ ++ +.++.+. ++.+|++++++.
T Consensus 98 ~l~~~~~~~~~~--------~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~---~~~~~~~~~~~~~--~g~~~~~~l~~~ 164 (406)
T TIGR01814 98 NLHLLLASFYKP--------TPKRYKILLEAKAFPSDHYAIESQLQLHGL---TVEESMVQIEPRE--EETLRLEDILDT 164 (406)
T ss_pred HHHHHHHHhcCC--------cCCccEEEecCCCCChHHHHHHHHHHhcCC---CcccceEEeccCC--CCccCHHHHHHH
Confidence 876665543110 1123478888899988443 4556687 66 4566543 468899999998
Q ss_pred HHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeecccccc
Q 038818 221 IDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300 (486)
Q Consensus 221 l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l 300 (486)
++... ..+.+|++++.++.+|.+.|+++|+++|+++|++++||++++.+....+- .. .++|++++++|||+
T Consensus 165 ~~~~~---~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~-~~-----~gvD~~~~s~hK~l 235 (406)
T TIGR01814 165 IEKNG---DDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDL-HD-----WGVDFACWCTYKYL 235 (406)
T ss_pred HHhcC---CCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCccccc-cc-----CCCCEEEEcCcccc
Confidence 86421 23568999999999999999999999999999999999999988765532 11 27999999999999
Q ss_pred CCCCcceEEEeeCchHHHHHhcCCcccccCccCC-CC--CccCCCCccccCCCC--CCchHHHHHHHHhchHHHHHHHHH
Q 038818 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD-SK--QVVDYKDWQITLSRR--FRALKLWLVLRSFGVANLRNFLRS 375 (486)
Q Consensus 301 ~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~--~~~~~~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~ 375 (486)
++|+| |+++++.+... .......++....... .. .........++.+.. ...+++..+++.+...|++++.++
T Consensus 236 ~g~pG-~~l~v~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~ 313 (406)
T TIGR01814 236 NAGPG-AGAFVHEKHAH-TERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKK 313 (406)
T ss_pred CCCCC-eEEEEehhhhh-hcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 87777 66666554321 1111111211110000 00 000001111112211 122344556666656678889999
Q ss_pred HHHHHHHHHHHHhCC----CCeEEecCC----CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee
Q 038818 376 HVRMAQLFQELVGGD----NRFEIVAPR----NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM 447 (486)
Q Consensus 376 ~~~~a~~l~~~L~~~----~~~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 447 (486)
..++++++++.|++. ++++++.+. ..++++|.+. .. .+.+.+.|.++|++ +.
T Consensus 314 ~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~---------------~~~~~~~L~~~gi~-v~--- 373 (406)
T TIGR01814 314 SLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP---------------GKAVFQALIKRGVI-GD--- 373 (406)
T ss_pred HHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC---------------HHHHHHHHHHCCEE-Ee---
Confidence 999999999999875 468888653 2457888775 21 23566677777864 32
Q ss_pred ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 448 VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 448 ~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..+...+|+|+++.++|++|||+++++|++++
T Consensus 374 ~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 374 KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 22335899999767889999999999998864
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=231.88 Aligned_cols=350 Identities=11% Similarity=0.043 Sum_probs=237.0
Q ss_pred ceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHH
Q 038818 77 FAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAA 156 (486)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~ 156 (486)
+-+.|++...+..+.+.+...... ..++.+.++.+++++++++++|.+... ..+++++||.++..++..
T Consensus 11 ~l~~pGP~~~~~~V~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~g~~~~~------~vi~~~~gt~a~~~a~~~ 79 (401)
T PLN02409 11 HLFVPGPVNIPERVLRAMNRPNED-----HRSPAFPALTKELLEDVKYIFKTKSGT------PFIFPTTGTGAWESALTN 79 (401)
T ss_pred eeccCCCCCCCHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCCC------EEEEeCCcHHHHHHHHHh
Confidence 345677777766666665543322 135677888899999999999997542 578899999887666554
Q ss_pred HHHHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEE
Q 038818 157 ARDQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFL 234 (486)
Q Consensus 157 a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~v 234 (486)
... +++.|+++...|++. ...++..|+ +++.++.+.+ ..+|+++|++++++++. ..+.+|
T Consensus 80 ~~~-----------~Gd~Vlv~~~~~~~~~~~~~~~~~g~---~v~~v~~~~~--~~~~~~~l~~~l~~~~~--~~~k~v 141 (401)
T PLN02409 80 TLS-----------PGDKVVSFRIGQFSLLWIDQMQRLNF---DVDVVESPWG--QGADLDILKSKLRQDTN--HKIKAV 141 (401)
T ss_pred cCC-----------CCCEEEEeCCCchhHHHHHHHHHcCC---ceEEEECCCC--CCCCHHHHHHHHhhCcC--CCccEE
Confidence 322 566788888889764 577888899 9999998753 35899999999986320 124578
Q ss_pred EeecCCccccccCCchHHHHH--HHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEee
Q 038818 235 CATVGTTAITTVDPLGPLCDI--AKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK 312 (486)
Q Consensus 235 v~~~gtt~~G~idpl~~I~~i--~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~ 312 (486)
++++++|++|.+.|+++|+++ |+++|++++||++++.+....+- .. -++|.++.++|||+++|.|+|+++++
T Consensus 142 ~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~-~~-----~~~D~~~~s~~K~l~~P~G~G~l~~~ 215 (401)
T PLN02409 142 CVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRM-DE-----WGVDVALTGSQKALSLPTGLGIVCAS 215 (401)
T ss_pred EEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccc-cc-----cCccEEEEcCccccCcCCCcceeEEC
Confidence 999999999999999999999 99999999999999765443321 11 17899999999999999999999987
Q ss_pred CchHHHHHhcC--CcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 313 NPNALIKALST--NPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 313 ~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
++.. .+.... .+.|....... .....+.+. ..+-. ...+++..+++.+...|++++.++..++++++++.|++
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~g~~~-~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~ 291 (401)
T PLN02409 216 PKAL-EASKTAKSPRVFFDWADYL--KFYKLGTYW-PYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEA 291 (401)
T ss_pred HHHH-HHHhcCCCCCeecCHHHHH--HHHhcCCCC-CCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6643 322221 11122110000 000000000 00101 01235555666666778999999999999999999988
Q ss_pred CCCeEEecCC---Ce-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC-CEeEEEEEecCCCC
Q 038818 390 DNRFEIVAPR---NF-AVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA-GIYFIRFAVGATLT 463 (486)
Q Consensus 390 ~~~~~~~~~~---~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~-~~~~lR~~~~~~~t 463 (486)
+ +++++.+. .+ .+++|++.... + ..++.+.+.+ .|+ .+.++... +...+|++.|. .+
T Consensus 292 ~-g~~~~~~~~~~~s~~v~~~~~p~~~------------~--~~~l~~~l~~~~~i-~i~~G~~~~~~~~~Rig~~g-~~ 354 (401)
T PLN02409 292 W-GLKLCTKKPEWRSDTVTAVVVPEGI------------D--SAEIVKNAWKKYNL-SLGLGLNKVAGKVFRIGHLG-NV 354 (401)
T ss_pred c-CCeeccCChhhcccceEEEeCCCCC------------C--HHHHHHHHHHhCCE-EEEcCCCcccCCEEEEcCCC-CC
Confidence 7 89987642 13 34556554211 1 2345555543 354 45444322 35689999987 56
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 464 t~~did~~i~~l~~~~~~l 482 (486)
+++|+..++++|.++++++
T Consensus 355 ~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 355 NELQLLGALAGVEMVLKDV 373 (401)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 8889999999999988754
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=238.69 Aligned_cols=402 Identities=13% Similarity=0.065 Sum_probs=262.4
Q ss_pred hhHHhhcCC-CCCCC--CCCCHHHHHHHHHhhhcCCCcCCCCCCccee-----cCCCCCHHHHHHHHHHhhcCCCccccc
Q 038818 35 PGYLRKRLP-ESAPY--NPEPIETILQDVQQHIVPGITHWQSPYYFAY-----FPSSGSIAGFLGEMLSSGFNVVGFNWM 106 (486)
Q Consensus 35 p~~~~~~~~-~~~p~--~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~l~~~~n~~~~~~~ 106 (486)
|..+++.-+ ...|. .+.|+.++++.+.++-.++....++..|+|- .+..-..|....++++. .+.. ..+
T Consensus 460 p~~~~r~~~~~~~p~f~~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~s~~eF~t~--hPyq-p~e 536 (954)
T PRK12566 460 PAVLQRRTAYLQHPVFNAHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPEFAQL--HPFA-PRE 536 (954)
T ss_pred chhhhcCCccccCcccccCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcccchhhhcC--CCCC-chh
Confidence 444443333 34453 4579999999999987777665555667775 33223344455666665 2222 224
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcC-CchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQG-TTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~-ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
.+.+.-++-.++.+|+++++|++.. .+.. +|+++++.++++.|.....+ |.. .+.+|+++...|.+.
T Consensus 537 ~sQG~lq~i~elq~~l~eLtGmd~~---------Sl~p~sGA~gE~A~Lmair~yh~~~-Ge~--~r~~vLIp~saHgtN 604 (954)
T PRK12566 537 QAEGYRAMIDELEAWLCAITGFDAI---------CMQPNSGAQGEYAGLLAIRRYHRSR-GQS--QRDICLIPSSAHGTN 604 (954)
T ss_pred hhcCHHHHHHHHHHHHHHHHCCCeE---------eecCCchHHHHHHHHHHHHHHHHhc-CCC--CCCEEEecccccccC
Confidence 4555555556667999999999853 4444 77888988888877543322 222 467888999999887
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
...+...|+ +++.||+|+ +|.+|+++|++++++.. ....+|+++++++..+..+|+++|+++|+++|+++++
T Consensus 605 pasa~~~Gi---eVv~Vp~D~--~G~iDle~L~a~I~~~~---~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~v 676 (954)
T PRK12566 605 PASAQMAGM---RVVIVECDP--DGNVDLDDLKAKAAAAG---DRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYM 676 (954)
T ss_pred HHHHHHCCC---EEEEeccCC--CCCcCHHHHHHHhhccC---CCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEE
Confidence 777888899 999999985 56999999999997321 1245788888888777778899999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeC---chHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKN---PNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~---~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
|+|+..+......... -++|++++++||||+.|.|.|..++.. ++.+...+...|. .... +.....+
T Consensus 677 DgA~~~a~~~l~~Pg~-----~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~-~d~~----G~~~r~g 746 (954)
T PRK12566 677 DGANLNAQVGLARPAD-----IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPV-VPVE----GPDPNNG 746 (954)
T ss_pred EeeChhhccCCCChhh-----cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCC-cCCC----CCCCCCC
Confidence 9999644433322122 289999999999999999999888765 1222222221111 0000 0000011
Q ss_pred CccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC----CCeeEEEEEeecCCCCCCC
Q 038818 343 DWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP----RNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 343 ~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~ 417 (486)
.....+.-.+ -++..|..++.+|.+ +.+.......+++|++++|.+. +++... +..+.+.+...+....
T Consensus 747 a~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~--~~v~~~~~~~~~~hEfii~~~~l~~~--- 820 (954)
T PRK12566 747 AVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA--FPVLYRGRNERVAHECILDLRPLKAQ--- 820 (954)
T ss_pred ceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh--CCCCcCCCCCCeeeEEEEEccccccc---
Confidence 1111111111 146778889999999 8888888899999999999774 444332 2234444444321100
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.... ...+.++|.+.|+.... ..+...+.+|++.+ ...+++|||+++++|+.+.+++.
T Consensus 821 --~g~~----~~dvakRL~d~Gihapt-~~fPv~~~LmIepT-E~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 821 --TGIS----EEDVAKRLMDYGFHAPT-MSFPVPGTLMVEPT-ESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred --cCCC----HHHHHHHHHHCCcEEeE-EeeccCCEEEEEee-eeCCHHHHHHHHHHHHHHHHHHH
Confidence 0011 23466666677864222 23345678999995 57788899999999999988754
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=232.11 Aligned_cols=309 Identities=14% Similarity=0.125 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH-
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI- 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~- 191 (486)
..-.++++++++++|.+.+ .+++++|||+++..++.+......+ +++.|+++..+|+++..++..
T Consensus 49 ~~~~~~r~~ia~~~g~~~~-------~v~~~~g~t~al~~~l~~l~~~~~~-------~gd~Vi~~~~~~~s~~~~~~~~ 114 (404)
T PRK14012 49 EAVDIARNQIADLIGADPR-------EIVFTSGATESDNLAIKGAAHFYQK-------KGKHIITSKTEHKAVLDTCRQL 114 (404)
T ss_pred HHHHHHHHHHHHHcCcCcC-------eEEEeCCHHHHHHHHHHHHHHhhcC-------CCCEEEEecCccHHHHHHHHHH
Confidence 3445678899999998765 6899999999998887765432111 567788899999998666554
Q ss_pred --cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 192 --AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 192 --~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
.|+ +++.+++++ ++.+|+++|+++|++++ .+|++++.+|++|.+.|+++|.++|+++|+++|+|+|+
T Consensus 115 ~~~g~---~~~~v~~~~--~g~~d~~~l~~~i~~~t------~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 115 EREGF---EVTYLDPQS--NGIIDLEKLEAAMRDDT------ILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred HhCCC---EEEEEccCC--CCcCCHHHHHHhcCCCC------EEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcch
Confidence 488 899999875 56899999999997543 47899999999999999999999999999999999999
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+.+....+- .. .++|++++++||++ +|.|+|+++++++... ...+.+..... . ..++.+
T Consensus 184 ~~g~~~~~~-~~-----~~~D~~~~s~~K~~-gp~g~G~l~~~~~~~~----~~~~~~~g~~~-------~---~~~~~g 242 (404)
T PRK14012 184 SVGKVPIDL-SK-----LKVDLMSFSAHKIY-GPKGIGALYVRRKPRV----RLEAQMHGGGH-------E---RGMRSG 242 (404)
T ss_pred hcCCcccCc-cc-----CCCCEEEEehhhcc-CCCceEEEEEecCCCC----CCCceecCCCc-------c---CCccCC
Confidence 876554321 11 26999999999955 5789999999876331 11121111100 0 001111
Q ss_pred -CCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--C---eeEEEEEeecCCCCCCCCCCcc
Q 038818 350 -RRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--N---FAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 350 -r~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~---~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
... ..+++-.++... ..++.+..++..++++++.+.|++++++++..+. . ...+.|...+.
T Consensus 243 t~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------- 310 (404)
T PRK14012 243 TLPTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG----------- 310 (404)
T ss_pred CcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH-----------
Confidence 111 112222333332 3456677888999999999999999888876431 1 12344443211
Q ss_pred chHHHHHHHHHHHHhcCcEEEeee-------------eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQLYVSHG-------------MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~-------------~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+++...+.+.....|..+.... .......+|+++ ++.+|++|||++++.|+++++.+
T Consensus 311 --~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 311 --ESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSL-GRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred --HHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEe-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 2222222111111222111100 001136899999 46789999999999999988765
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=226.80 Aligned_cols=340 Identities=13% Similarity=0.126 Sum_probs=221.8
Q ss_pred CcceecCCCCCHHHHHHHHHHhhcCC---C-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGFNV---V-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAI 150 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~n~---~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~ 150 (486)
.|+++...++.++.+ .+.+...+.. + ...|..+....++..++++.+++++|.++. ..++++|+|+++
T Consensus 19 ~yl~~~~~~~~p~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~-------~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPAGTQIPQSV-ADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP-------EVVFGANATSLT 90 (397)
T ss_pred EEecCCccCCCCHHH-HHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC-------eEEEeCCHHHHH
Confidence 577765444444444 3444333311 1 122333334556677899999999998764 578899988887
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH----HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHH
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ----KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ 226 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~----~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~ 226 (486)
...+.+..... .+++.|+++...|+|.. ..++..|+ +++.++++++ ++.+|+++|++++++.
T Consensus 91 ~~~~~~~~~~~--------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~~~~~l~~~i~~~-- 156 (397)
T TIGR01976 91 FLLSRAISRRW--------GPGDEVIVTRLDHEANISPWLQAAERAGA---KVKWARVDEA-TGELHPDDLASLLSPR-- 156 (397)
T ss_pred HHHHHHHHhcC--------CCCCEEEEcCCchHhHHHHHHHHHHhcCC---EEEEEecccc-CCCcCHHHHHHhcCCC--
Confidence 54444332110 15677888889998754 55677898 9999998752 4689999999998653
Q ss_pred CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc
Q 038818 227 AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 227 ~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~ 306 (486)
+.+|++++++|++|.+.|+++|+++|+++|+++++|+++..+....+ ... .++|.+++++|||++ |. +
T Consensus 157 ----~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-~~~-----~~~d~~~~s~~K~~g-~~-~ 224 (397)
T TIGR01976 157 ----TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLID-VQA-----TGADFLTCSAYKFFG-PH-M 224 (397)
T ss_pred ----ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCC-HHH-----cCCCEEEEechhhcC-Cc-e
Confidence 34799999999999999999999999999999999999865433221 111 168999999999985 43 8
Q ss_pred eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC-CCC-CchHHHHHHHHhchH--------------HHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS-RRF-RALKLWLVLRSFGVA--------------NLR 370 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s-r~~-~~l~~~~~l~~~g~~--------------g~~ 370 (486)
|+++++++ .+.........+..... ...++.| +.+ ..+++..+++.+... +++
T Consensus 225 G~l~~~~~-~~~~l~~~~~~~~~~~~----------~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~ 293 (397)
T TIGR01976 225 GILWGRPE-LLMNLPPYKLTFSYDTG----------PERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQ 293 (397)
T ss_pred EEEEEcHH-HHhhCCCccccCccCCC----------cchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHH
Confidence 88888755 22221111111111100 0011222 222 223445555544222 366
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEecC----CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee
Q 038818 371 NFLRSHVRMAQLFQELVGGDNRFEIVAP----RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG 446 (486)
Q Consensus 371 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 446 (486)
+..++..++++++++.|+++++++++.+ ...+++.|.+.+.. ...+.++|.++|+.+-...
T Consensus 294 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~L~~~gI~v~~~~ 358 (397)
T TIGR01976 294 AIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLP---------------PQRVVRRLADQGIDAWAGH 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcC---------------HHHHHHHHHHCCeEEEeCc
Confidence 7788888999999999999878998764 25678887764321 2356777777787533221
Q ss_pred e----------E-CCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 447 M----------V-AGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 447 ~----------~-~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
. . .+..++|+|++ +++|++||++++++|
T Consensus 359 ~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l 397 (397)
T TIGR01976 359 FYAVRLLRRLGLNDEGGVVRVGLA-HYNTAEEVDRLLEAL 397 (397)
T ss_pred cchHHHHHHhCCCCCCCeEEEEee-ccCCHHHHHHHHHhC
Confidence 1 1 13468999995 578888999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=224.19 Aligned_cols=349 Identities=9% Similarity=0.058 Sum_probs=228.9
Q ss_pred ceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHH
Q 038818 77 FAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAA 156 (486)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~ 156 (486)
+=+.|++......+.+.+...+. .+ .+.+..+..++++.+++++|.+++. ...++|+|||+++..++..
T Consensus 5 ~l~~pgp~~~~~~v~~~~~~~~~----~~--~~~~~~~~~~~r~~la~l~~~~~~~-----~~i~~t~~~t~al~~~~~~ 73 (363)
T TIGR02326 5 LLLTPGPLTTSRTVKEAMLFDWC----TW--DSDYNIVVEQIRQQLLALATAEEGY-----TSVLLQGSGTFAVEAVIGS 73 (363)
T ss_pred eEecCCCCCCCHHHHHHhCCCCC----CC--ChHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCCCHHHHHHHHHh
Confidence 33567766665555554433331 22 2456666778999999999997531 1578999999999777655
Q ss_pred HHHHHHHHccccCCCCeEEEecCCCchH-HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEE
Q 038818 157 ARDQILNEIGRENISRLVVYGSDQTHSA-LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLC 235 (486)
Q Consensus 157 a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv 235 (486)
.... ++.+++++...|.+ +.+.++..|+ +++.+|+++ ++.+|++++++++++.++ +.+|.
T Consensus 74 l~~~----------~~~vlv~~~~~~~~~~~~~a~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~~----~~~v~ 134 (363)
T TIGR02326 74 AVPK----------DGKLLVVINGAYGARIVQIAEYLGI---PHHVVDTGE--VEPPDVVEVEAILAADPA----ITHIA 134 (363)
T ss_pred cCCC----------CCeEEEEeCChhhHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHHHHHhhCCC----ccEEE
Confidence 4321 44556656555555 4677888999 999999875 458999999999875321 33678
Q ss_pred eecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 236 ATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 236 ~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
+++++|++|.+.|+++|+++|+++|++++||++++.+....+ . ..+ ++|.++.++|||+++|.|.|+++++++.
T Consensus 135 ~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~-~----~~~-~~D~~~~s~~K~l~~p~G~G~l~~~~~~ 208 (363)
T TIGR02326 135 LVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPID-I----AEL-HIDYLISSANKCIQGVPGFGFVIARQAE 208 (363)
T ss_pred EEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccc-h----hhc-CccEEEecCccccccCCcceEEEECHHH
Confidence 888999999999999999999999999999998875544332 1 112 6899999999999999999999998764
Q ss_pred HHHHHhcCCcccccCcc--CCC-CCccCCCCccccCCCCCCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCC
Q 038818 316 ALIKALSTNPEFLRNKA--SDS-KQVVDYKDWQITLSRRFRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDN 391 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~--~~~-~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~ 391 (486)
. .+......++..... ... ....+...++. -....+++..+++.+..+ +++++.++..++++++++.|+++
T Consensus 209 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~---~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~- 283 (363)
T TIGR02326 209 L-AACKGNARSLSLDLYDQWRCMEDNHGKWRFTS---PTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL- 283 (363)
T ss_pred H-HHhhcCCCceeecHHHHHHHHhccCCCCCCCC---cHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 3 222111111100000 000 00000000110 011224555566665444 47888899999999999999887
Q ss_pred CeEEecCC--CeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHH
Q 038818 392 RFEIVAPR--NFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 392 ~~~~~~~~--~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~di 468 (486)
+++++.++ ..++ ++|.+.+.. ......+.+.|.++|+. +.++...+..++|++++. ..+.+|+
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~L~~~gi~-v~~g~~~~~~~iRi~~~~-~~~~edv 349 (363)
T TIGR02326 284 GFEPLLDDEIQSPIITSFYSPEDP------------DYRFADFYQRLKEQGFV-IYPGKVSQVDCFRIGNIG-EVDAADI 349 (363)
T ss_pred CCeeccCcccCCceEEEEECCCCC------------CCCHHHHHHHHHHCCEE-EECCcCCCCCEEEEecCC-CCCHHHH
Confidence 78876543 3444 456654310 00123566777777875 443322234689999865 5678899
Q ss_pred HHHHHHHHHHHH
Q 038818 469 IAAWKVVQEKLD 480 (486)
Q Consensus 469 d~~i~~l~~~~~ 480 (486)
++++++|++++.
T Consensus 350 ~~~l~~l~~~l~ 361 (363)
T TIGR02326 350 TRLLTAIGKAMY 361 (363)
T ss_pred HHHHHHHHHHhC
Confidence 999999988753
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=216.75 Aligned_cols=310 Identities=14% Similarity=0.106 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
-+++.+.+++++|. + ..++++|||+++..++.+... ++..|+++..+|++...+++..|+
T Consensus 46 ~~~l~~~la~~~g~--~-------~i~~~~g~t~al~~~l~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~g~ 105 (361)
T cd06452 46 IKDFHHDLAEFLGM--D-------EARVTPGAREGKFAVMHSLCE-----------KGDWVVVDGLAHYTSYVAAERAGL 105 (361)
T ss_pred HHHHHHHHHHHcCC--c-------eEEEeCCHHHHHHHHHHHhcC-----------CCCEEEEcCCcchHHHHHHHhcCC
Confidence 34566778999998 2 578999999998877766532 567788899999999989999999
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC-CCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchh
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA-GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~-g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+++.+|++.++++.+|+++|++++++..++ +..+.+|++++++|++|.+.|+++|.++|+++|+++|+|+||+.+.
T Consensus 106 ---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~ 182 (361)
T cd06452 106 ---NVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR 182 (361)
T ss_pred ---EEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCC
Confidence 999999986445699999999999764322 2235688899999999999999999999999999999999997654
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc-cCCCC-
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI-TLSRR- 351 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~sr~- 351 (486)
...+. .. .++|.++.++||++++|.++|+++++++ ...+......+|-. ...+. ..+.+
T Consensus 183 ~~~~~-~~-----~~~d~~~~s~~K~l~~~~~~G~l~~~~~-~~~~l~~~~~~~~~------------~~~~~~~~~~~~ 243 (361)
T cd06452 183 MPVSG-KE-----LGADFIVGSGHKSMAASAPIGVLATTEE-WADIVFRTSQMFKI------------KEVELLGCTLRG 243 (361)
T ss_pred cCCCH-HH-----cCCCEEEecCCccccCCCCeEEEEECHH-HHHHHhcccccccc------------ceeeeeccccCc
Confidence 32221 11 1589999999999998888998888654 33332222211100 00010 11111
Q ss_pred CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec--CCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 352 FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA--PRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 352 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
..+..++.++..+ .+.+ +...+..++++++++.|+++|+++++. +...+++.|........ .........
T Consensus 244 ~~~~~~~~al~~~-~~~~-~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~------~~~~~~~~~ 315 (361)
T cd06452 244 APLVTLMASFPHV-KERV-KRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEI------AKKHKRRGY 315 (361)
T ss_pred hHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchh------hhhccccch
Confidence 1233444444432 2333 345555677899999999999999874 33456666665411000 000000112
Q ss_pred HHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
++.+.|.++|+... . .....++|++++ ..+++|++.++++|+++.
T Consensus 316 ~~~~~L~~~gI~~~-~--~~~~~~~ri~~~--g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 316 FLYSELKKRGIHGI-K--PGLTRYFKLSTY--GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred hHHHHHHHcCceEE-c--CCCceEEEEEec--CCCHHHHHHHHHHHHHHh
Confidence 57777877887521 1 122347898874 357789999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-24 Score=211.95 Aligned_cols=311 Identities=14% Similarity=0.121 Sum_probs=207.3
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++.+.+++++|.+. ..+++||++++..++.+... +++.|+++...|++...+++..|+
T Consensus 54 ~~~~e~lA~~~g~~~---------~~i~~g~~~a~~~~~~~l~~-----------~gd~Vl~~~~~h~s~~~~~~~~g~- 112 (370)
T TIGR02539 54 HDFLEDLAEFLGMDE---------ARVTHGAREGKFAVMHALCK-----------EGDWVVLDGLAHYTSYVAAERAGL- 112 (370)
T ss_pred HHHHHHHHHHhCCCc---------eEEECChHHHHHHHHHHhhC-----------CCCEEEECCcccHHHHHHHHHcCC-
Confidence 345667999999874 46789999998776665532 567788899999999899999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC-CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG-LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g-~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~ 274 (486)
+++.+|.+++.++.+|+++|+++|++.++.+ ..+.+|+++++++++|.+.|+++|+++|++||++++||+||+.+.+
T Consensus 113 --~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~ 190 (370)
T TIGR02539 113 --NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRM 190 (370)
T ss_pred --EEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCc
Confidence 9999998754468999999999997643221 2456788899999999999999999999999999999999986532
Q ss_pred cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~ 353 (486)
..+ ... .++|.++.++||+++.+.++|+++.+++ ..........+|..... . .+..+.. ..
T Consensus 191 ~~~-~~~-----~~~di~v~s~sK~~~~~g~~G~l~~~~~-~i~~l~~~~~~~~~~~~-------~----~~~~~~~~~~ 252 (370)
T TIGR02539 191 PVS-AKE-----IGADFIVGSGHKSMAASGPCGVLGMSEE-WEDIVLRKSRYSPVKEV-------E----LLGCTSRGAP 252 (370)
T ss_pred CCC-HHH-----cCCCEEEeeCcccccCCCCEEEEEECHH-HHhhhcccccCCcccee-------e----eecccccccH
Confidence 221 111 1589999999999997777898887654 33322222222221110 0 0011111 12
Q ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe--cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHH
Q 038818 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--APRNFAVVCFRVLPSASGLGDGKANEGANELNRKL 431 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~--~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l 431 (486)
+..++.++... .+.+ +...+..+++++|++.|+++ +++++ .++.++++.+.+...... ..........+
T Consensus 253 ~~~~~~al~~~-~~~l-~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~------~~~~~~~~~~~ 323 (370)
T TIGR02539 253 IVTMMASFPHV-VERV-KRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEI------AQKHKRRGYFL 323 (370)
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHH------hhhhccccHHH
Confidence 22333333221 2222 22344566678999999998 78874 355677887775321000 00001123457
Q ss_pred HHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 432 LESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 432 ~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+.|.++|+..+.+ ....++|++++ ..+++|++++++.|+++.++
T Consensus 324 ~~~L~e~GI~~ir~---~~~~~iRis~~--~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 324 YEELKKRGIHGIRS---GQTKYFKLSVY--GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHhCCCccccC---CcceEEEEEec--CCCHHHHHHHHHHHHHHHHh
Confidence 77888889842322 22458999984 34788999999999988765
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=213.69 Aligned_cols=346 Identities=11% Similarity=0.091 Sum_probs=222.0
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHH
Q 038818 79 YFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
|.|++...+..+.+.+...++. + ++.+..+..++++.+++++|.++.. ...++++|||+++..++....
T Consensus 3 ~~p~p~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~la~~~~~~~~~-----~~i~~~~~gt~~l~~~~~~~~ 71 (355)
T TIGR03301 3 LTPGPLSTSATVRDAMLVDWCH----W--DSEFNDVTDQVRDRLLALAGGDDNH-----TCVLLQGSGTFAVEATIGSLV 71 (355)
T ss_pred CcCCCCCCCHHHHHHhhhhccC----C--CHHHHHHHHHHHHHHHHHhcCCCCC-----cEEEEeCCcHHHHHHHHHhcc
Confidence 3456666666666665543322 2 2334467778999999999998641 146789999999887776654
Q ss_pred HHHHHHccccCCCCeEEEecCCCchH-HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEee
Q 038818 159 DQILNEIGRENISRLVVYGSDQTHSA-LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCAT 237 (486)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~ 237 (486)
.. ++.+++++...|.+ +..+++..|+ +++.++.+. ++.+|++++++++++.+ ...+|+.+
T Consensus 72 ~~----------~~~vi~~~~~~~~~~~~~~a~~~g~---~~~~i~~~~--~~~~d~~~l~~~l~~~~----~~~~v~~~ 132 (355)
T TIGR03301 72 PR----------DGKLLVLINGAYGERLAKICEYLGI---PHTDLNFSE--YEPPDLNRIEEALAADP----DITHVATV 132 (355)
T ss_pred CC----------CCeEEEECCCchhhHHHHHHHHcCC---ceEEEecCC--CCCCCHHHHHHHHHhCC----CceEEEEE
Confidence 31 33445555444443 5677888999 999999874 45899999999987532 24467788
Q ss_pred cCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHH
Q 038818 238 VGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNAL 317 (486)
Q Consensus 238 ~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~ 317 (486)
+++|++|.+.|+++|+++|++||+++++|++++.+....+ +.. -++|.++.++|||+++|.|+|+++++++. +
T Consensus 133 ~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~-----~~~-~~~d~~~~s~~K~l~~~~G~g~~~~~~~~-~ 205 (355)
T TIGR03301 133 HHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPID-----IEE-LDVDALIASANKCLEGVPGFGFVIARRDL-L 205 (355)
T ss_pred ecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccc-----hhh-cCccEEEecCCcccccCCceeEEEECHHH-H
Confidence 8999999999999999999999999999998754432211 111 16899999999999988899999987653 2
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
........++............... ....+.. ....++..+++.+..++ +.+..++..++++++.+.|+++ ++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~ 282 (355)
T TIGR03301 206 EASAGNARSLYLDLYDQWAYMEKTG--KWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQP 282 (355)
T ss_pred HHhhCCCCCceeeHHHHHHHhhhcC--CCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 3221111111111000000000000 0000111 11133445666665555 8888899999999999999887 7887
Q ss_pred ecCCC--ee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHH
Q 038818 396 VAPRN--FA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 396 ~~~~~--~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i 472 (486)
+.++. .+ +++|++.+.. .....++.+++.++|+. +.+.......++|++++ ..++++|+++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~-i~~~~~~~~~~iRis~~-~~~~~~~i~~~~ 348 (355)
T TIGR03301 283 LLPERWQSPIIVSFLYPDDP------------DFDFDDFYQELKERGFV-IYPGKLTLADTFRIGTI-GEIDAADIERLL 348 (355)
T ss_pred ecCCCCCCCcEEEEECCCCC------------cchHHHHHHHHHHCCEE-EECCccccccEEEEecC-CCCCHHHHHHHH
Confidence 65432 23 3455554211 01124667777778875 33332222368999985 467888999999
Q ss_pred HHHHHH
Q 038818 473 KVVQEK 478 (486)
Q Consensus 473 ~~l~~~ 478 (486)
+.|+++
T Consensus 349 ~~l~~~ 354 (355)
T TIGR03301 349 EAIKDA 354 (355)
T ss_pred HHHHhh
Confidence 999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=208.15 Aligned_cols=324 Identities=15% Similarity=0.096 Sum_probs=231.1
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH-
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA- 184 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s- 184 (486)
..+|.+..+.+++.+.+..+|+.+..+ ..+++++||.+...++..... +++.|++....-++
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~~------~~ll~gsGt~amEAav~sl~~-----------pgdkVLv~~nG~FG~ 93 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENGD------VVLLSGSGTLAMEAAVASLVE-----------PGDKVLVVVNGKFGE 93 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCc------EEEEcCCcHHHHHHHHHhccC-----------CCCeEEEEeCChHHH
Confidence 456889999999999999999988542 567788988777666655544 55556655566654
Q ss_pred -HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 185 -LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 185 -~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
+...++.+|. +++.+.+.+.. .+|+++++++|+++.. ..+|.++++.|+||.++|+++|+++||+||..+
T Consensus 94 R~~~ia~~~g~---~v~~~~~~wg~--~v~p~~v~~~L~~~~~----~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~ 164 (383)
T COG0075 94 RFAEIAERYGA---EVVVLEVEWGE--AVDPEEVEEALDKDPD----IKAVAVVHNETSTGVLNPLKEIAKAAKEHGALL 164 (383)
T ss_pred HHHHHHHHhCC---ceEEEeCCCCC--CCCHHHHHHHHhcCCC----ccEEEEEeccCcccccCcHHHHHHHHHHcCCEE
Confidence 8889999999 99999988644 8999999999995432 448999999999999999999999999999999
Q ss_pred EeeccccchhccC--ccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcc-cccC-ccCC-CCCc
Q 038818 264 HVDAAYAGSACIC--PEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPE-FLRN-KASD-SKQV 338 (486)
Q Consensus 264 hvD~a~g~~~~~~--~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~-y~~~-~~~~-~~~~ 338 (486)
+||+.-+.+.... +++ ++|.+...++|++++|+|.|++.++++.+- .......+ |..+ .... ....
T Consensus 165 iVDaVsS~Gg~~~~vd~w--------giDv~itgSQK~l~~PPGla~v~~S~~a~e-~~~~~~~~~~ylDL~~~~~~~~~ 235 (383)
T COG0075 165 IVDAVSSLGGEPLKVDEW--------GIDVAITGSQKALGAPPGLAFVAVSERALE-AIEERKHPSFYLDLKKWLKYMEK 235 (383)
T ss_pred EEEecccCCCcccchhhc--------CccEEEecCchhccCCCccceeEECHHHHH-HHhcCCCCceeecHHHHHHHHhh
Confidence 9998765433322 222 899999999999999999999999988653 23332222 3222 1100 0000
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--CeeEEEEEeecCCCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFAVVCFRVLPSASGLG 416 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~ 416 (486)
....++|... ....++..+++.+-.+|++.+++++.++++++++.++++ ||+++.++ .+++++....|.+.
T Consensus 236 ~~~~p~Tppv---~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~--- 308 (383)
T COG0075 236 KGSTPYTPPV---NLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGV--- 308 (383)
T ss_pred cCCCCCCCCH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCC---
Confidence 0111111111 022567778888888999999999999999999999998 89998743 24444444444321
Q ss_pred CCCCccchHHHHHHHHHHHHhcCcEEEeee-eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 417 DGKANEGANELNRKLLESINASGQLYVSHG-MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+ .+++...+.+++.+.+++. .......+||..|. ..+.+|+..++.+|..+++++
T Consensus 309 --------~--~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG-~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 309 --------D--DKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMG-NVRPEDVLAALAALEAALREL 364 (383)
T ss_pred --------C--cHHHHHHHHHhCCEEecccccccCccEEEEecCc-cCCHHHHHHHHHHHHHHHHHc
Confidence 1 1222334444444445443 22234589999998 888889999999999998765
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-24 Score=212.72 Aligned_cols=347 Identities=12% Similarity=0.069 Sum_probs=225.5
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHH
Q 038818 79 YFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
+.|++......+.+.+...+ ..+ ++.+.+...++++.+++++|.+++. ...+++++||+++..++....
T Consensus 9 ~~pgP~~~~~~~~~a~~~~~----~~~--~~~~~~~~~~~~~~l~~l~~~~~~~-----~~i~~~~~gt~~l~~~~~~l~ 77 (368)
T PRK13479 9 LTPGPLTTSRTVREAMLRDW----GSW--DDDFNALTASVRAKLVAIATGEEGY-----TCVPLQGSGTFSVEAAIGSLV 77 (368)
T ss_pred ecCCCCCCCHHHHHHhCCCC----CCC--ChHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCCcHHHHHHHHHhcc
Confidence 55665555554544443332 222 3445567788999999999986531 147789999999877766653
Q ss_pred HHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEe
Q 038818 159 DQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236 (486)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~ 236 (486)
. ++..+++....++.. ...++..|+ +++.+|.++ ++.+|++++++++++..+ ..+|.+
T Consensus 78 ~-----------~~~~vlv~~~~~~~~~~~~~~~~~g~---~~~~i~~~~--~~~~d~~~l~~~l~~~~~----~~~v~~ 137 (368)
T PRK13479 78 P-----------RDGKVLVPDNGAYGARIAQIAEYLGI---AHVVLDTGE--DEPPDAAEVEAALAADPR----ITHVAL 137 (368)
T ss_pred C-----------CCCeEEEEeCCchHHHHHHHHHHcCC---cEEEEECCC--CCCCCHHHHHHHHHhCCC----CcEEEE
Confidence 2 333444444555553 578888999 999999875 458999999999875321 336788
Q ss_pred ecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 237 ~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
++++|++|.+.|+++|.++|+++|++++||++++.+....+ +.. .++|.++.++|||+++|.|+|+++++++..
T Consensus 138 ~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~-----~~~-~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~ 211 (368)
T PRK13479 138 VHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPID-----IAE-LGIDALISSANKCIEGVPGFGFVIARRSEL 211 (368)
T ss_pred EcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCcccc-----ccc-cCceEEEecCccccccCCCceEEEECHHHH
Confidence 99999999999999999999999999999987754332211 111 168999999999999999999999976532
Q ss_pred HHHHhcCCcccccCcc--CCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 317 LIKALSTNPEFLRNKA--SDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
........+|..+.. ...........+ +.. ....++..++..+..+ ++++..++..++++++++.|+++ +
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 285 (368)
T PRK13479 212 -EACKGNSRSLSLDLYDQWAYMEKTGQWRF----TPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-G 285 (368)
T ss_pred -HHhhcCCCCeeecHHHHHhhhcccCCCCC----CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 222222222211100 000000000001 111 1223455566655444 47888899999999999999988 7
Q ss_pred eEEecCCC--e-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 038818 393 FEIVAPRN--F-AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 393 ~~~~~~~~--~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did 469 (486)
++++.++. . .+++|.+.... +....++.+.|.++|+.+ .+.......++|++++. .++++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~L~~~gi~v-~~g~~~~~~~iRis~~~-~~t~edi~ 351 (368)
T PRK13479 286 FEPLLDAEIQSPIIVTFHAPADP------------AYDFKEFYERLKEQGFVI-YPGKLTQVDTFRIGCIG-DVDAADIR 351 (368)
T ss_pred CcccCCchhcCceEEEEECCCCC------------CcCHHHHHHHHHHCCEEE-ecCCCCCCCEEEEecCC-CCCHHHHH
Confidence 88764432 2 24666654321 001246777788888754 33322224579998754 56788999
Q ss_pred HHHHHHHHHHHHH
Q 038818 470 AAWKVVQEKLDGI 482 (486)
Q Consensus 470 ~~i~~l~~~~~~l 482 (486)
+++++|+++++++
T Consensus 352 ~~l~~L~~~l~~~ 364 (368)
T PRK13479 352 RLVAAIAEALYWM 364 (368)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988765
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=210.69 Aligned_cols=257 Identities=11% Similarity=0.085 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
+.....+..++++++++++|.+++ .+++++|+|+++..++......... .++..|+++...|+|+..
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~-------~v~~~~g~t~a~~~~l~~l~~~~~~------~g~~~vi~~~~~~~s~~~ 103 (353)
T TIGR03235 37 GHNAKKAVERARKQVAEALGADTE-------EVIFTSGATESNNLAILGLARAGEQ------KGKKHIITSAIEHPAVLE 103 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCCHHHHHHHHHHHHHHhccc------CCCCeeeEcccccHHHHH
Confidence 334456677899999999999765 6899999999988777665432100 023678889999998765
Q ss_pred HH---HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 188 AA---QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 188 a~---~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
.. +..|+ +++.+|+++ ++.+|+++|++++++. +.+|++++++|++|.+.|+++|+++|+++|+|+|
T Consensus 104 ~~~~~~~~G~---~v~~v~~~~--~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~i 172 (353)
T TIGR03235 104 PIRALERNGF---TVTYLPVDE--SGRIDVDELADAIRPD------TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFH 172 (353)
T ss_pred HHHHHHhcCC---EEEEEccCC--CCcCCHHHHHHhCCCC------CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEE
Confidence 54 34577 999999875 4689999999988643 3578899999999999999999999999999999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
||++++.+....+- .. .++|++++++|||+ +|.|+|+++++++.... ....+.+..... . .
T Consensus 173 vD~a~~~g~~~~~~-~~-----~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~~--~~~~~~~~~~~~---------~-~ 233 (353)
T TIGR03235 173 VDAAQVVGKITVDL-SA-----DRIDLISCSGHKIY-GPKGIGALVIRKRGKPK--APLKPIMFGGGQ---------E-R 233 (353)
T ss_pred EEchhhcCCccccc-cc-----cCCCEEEeehhhcC-CCCceEEEEEccCcccc--cccCceeeCCCC---------c-C
Confidence 99999876654431 11 27999999999985 68899999999763211 111221111100 0 0
Q ss_pred cccC-CCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC---eeEEEEEee
Q 038818 345 QITL-SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN---FAVVCFRVL 409 (486)
Q Consensus 345 ~~~~-sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---~~~v~f~~~ 409 (486)
.++. +.. ...+++..+++.+ .++.+++.++..++++++++.|++ ++++++.++. ..+++|.+.
T Consensus 234 ~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~ 301 (353)
T TIGR03235 234 GLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSID 301 (353)
T ss_pred ccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeC
Confidence 1111 111 1224455555544 357788889999999999999988 6999886542 346777654
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=216.10 Aligned_cols=313 Identities=10% Similarity=0.054 Sum_probs=202.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEc---CCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQ---GTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS 183 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t---~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 183 (486)
.......+|..+++.++++||.+.+ ...++ +|||+||+.++.+... +++.|+++...|.
T Consensus 74 g~~~~~~iE~~ar~~~a~lf~a~~~-------~~~~~~~~~sgt~an~~v~~al~~-----------~gd~Ii~~~~ehg 135 (452)
T PTZ00094 74 GNEVVDKIENLCQKRALEAFGLDPE-------EWGVNVQPYSGSPANFAVYTALLQ-----------PHDRIMGLDLPSG 135 (452)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcc-------cceeecCCCchHHHHHHHHHHhcC-----------CCCEEEecccccC
Confidence 3344577887789999999999754 22344 7899999887776532 5678888989997
Q ss_pred HHHHHHHHc--------CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHH
Q 038818 184 ALQKAAQIA--------GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDI 255 (486)
Q Consensus 184 s~~~a~~~~--------G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i 255 (486)
+....+..+ |.+. ++..++++. ++.+|+++|++++++.. |.+|+++ .+.+|.+.|+++|+++
T Consensus 136 ~~l~~~~~l~~~~~~~~~~~~-~~~~~~~~~--~g~id~~~L~~~l~~~~-----~~lvi~~--~s~~g~~~di~~I~~i 205 (452)
T PTZ00094 136 GHLTHGFYTAKKKVSATSIYF-ESLPYQVNE--KGLIDYDKLEELAKAFR-----PKLIIAG--ASAYPRDIDYKRFREI 205 (452)
T ss_pred Ccccccccccccccccceeee-eeeecccCC--CCCcCHHHHHHHHHHhC-----CCEEEEe--CCCCCCccCHHHHHHH
Confidence 754433211 1100 344556664 47999999999997532 3344443 4569999999999999
Q ss_pred HHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 256 AKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
|+++|+++|||+||+.+.+..+.... .+.++|.+++++|||+++|.| |+++++++.. ..........++.
T Consensus 206 ~~~~ga~l~vDaaq~~G~i~~~~~~~---~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~-~~l~~~~~~~~~p----- 275 (452)
T PTZ00094 206 CDSVGAYLMADIAHTSGLVAAGVLPS---PFPYADVVTTTTHKSLRGPRS-GLIFYRKKVK-PDIENKINEAVFP----- 275 (452)
T ss_pred HHHcCCEEEEeccchhccccCCCCCC---CCCCCcEEEcCCccCCCCCCc-eEEEEecccc-hHHHHhhccccCC-----
Confidence 99999999999999988775432221 123799999999999999997 7777765421 1100000001110
Q ss_pred CCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCC
Q 038818 336 KQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSAS 413 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~ 413 (486)
.++++-. ....++..+++.+...+++++.++..+++++|.+.|.+. ++++..+. ...++.+.+....
T Consensus 276 ---------~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~- 344 (452)
T PTZ00094 276 ---------GLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFG- 344 (452)
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCC-
Confidence 0111111 133455666776655677888899999999999999886 88887532 1233333332211
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-----CEeEEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-----GIYFIRFAVGATLTE----DRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----~~~~lR~~~~~~~tt----~~did~~i~~l~~~~~~ 481 (486)
...+.+...|.+.|+.+-..+... ..+.+|+++. ..|+ ++||+++++.|.++++.
T Consensus 345 ------------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~-~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 345 ------------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTP-ALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred ------------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCH-HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 012345555655677432211111 2368999984 4555 89999999999998863
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=225.57 Aligned_cols=366 Identities=12% Similarity=0.005 Sum_probs=228.7
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc-----CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF-----NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
.||++-.+++..+..+.+++..++ |+. ..+..+..+.++-.++++.+++++|.++.. -.++||+|+|+|
T Consensus 36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~lga~~~~-----~~VvFtsnaT~a 109 (805)
T PLN02724 36 VYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYFNAPPSD-----YACVFTSGATAA 109 (805)
T ss_pred EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHhCCCccc-----eEEEEeCChHHH
Confidence 588887766656666666554432 333 233345556677778999999999996541 047999999999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH---HHHcCCCCCCeEEEecCCC------CCcccCH--HHHH
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA---AQIAGIDPKNFRAIKTTKS------SSFTLTP--ESLQ 218 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a---~~~~G~g~~~v~~v~~d~~------~~~~~d~--~~L~ 218 (486)
+..+..... . .++..|+++...|.|+... ++..|+ +++.+|++.. +.+.+++ ++|+
T Consensus 110 lnlva~~l~-~---------~~gd~Iv~t~~eH~svl~~~~~a~~~G~---~v~~v~~~~~~~~~~~~~g~~~~~~~~l~ 176 (805)
T PLN02724 110 LKLVGETFP-W---------SSESHFCYTLENHNSVLGIREYALEKGA---AAIAVDIEEAANQPTNSQGSVVVKSRGLQ 176 (805)
T ss_pred HHHHHHHCC-C---------CCCCeEEEeeccccchHHHHHHHHHcCC---eEEeccchhccccccccccccccchhhhh
Confidence 765533321 1 0456788888999885533 344588 8999988621 1234443 6677
Q ss_pred HHHHHHHH----CCCccEEEEeecCCccccccCCchHHHHHHHHh--------CceEEeeccccchhccCccchhhhcCC
Q 038818 219 AAIDLDIQ----AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--------SIWVHVDAAYAGSACICPEFRHFIDGI 286 (486)
Q Consensus 219 ~~l~~~~~----~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--------g~~lhvD~a~g~~~~~~~~~~~~~~~~ 286 (486)
+.+++... .+..+.+|++++.+|.+|.+.|++.|..+++.. +++++||||++.+....+- .. +
T Consensus 177 ~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv-~~----~ 251 (805)
T PLN02724 177 RRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDL-SR----Y 251 (805)
T ss_pred hhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCCh-hh----c
Confidence 66431110 112335899999999999999999876665542 3579999999887766542 21 1
Q ss_pred CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCC---CC-C---ccCCCCccccCCCC-C-CchHH
Q 038818 287 EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD---SK-Q---VVDYKDWQITLSRR-F-RALKL 357 (486)
Q Consensus 287 ~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~---~~-~---~~~~~~~~~~~sr~-~-~~l~~ 357 (486)
++|++++++|||+++|.|+|++++|++.. . ...|.+..+.... .. . ........++.|.. + ..+++
T Consensus 252 -~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~-~---~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l 326 (805)
T PLN02724 252 -PADFVVVSFYKIFGYPTGLGALLVRRDAA-K---LLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAAL 326 (805)
T ss_pred -CCCEEEEecceeccCCCCceEEEEehhhh-h---hhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHH
Confidence 79999999999999999999999997532 2 1223333321100 00 0 00000112233222 2 23566
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC------CeEEecCC--------CeeEEEEEeecCCCCCCCCCCccc
Q 038818 358 WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN------RFEIVAPR--------NFAVVCFRVLPSASGLGDGKANEG 423 (486)
Q Consensus 358 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~------~~~~~~~~--------~~~~v~f~~~~~~~~~~~~~~~~~ 423 (486)
..++..+-.-|++++.++..++++++.+.|++++ +++++++. ..++|+|.+..... ..
T Consensus 327 ~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~--------~~ 398 (805)
T PLN02724 327 RHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADG--------SW 398 (805)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCC--------CE
Confidence 6677766555788888999999999999999886 57887542 46899999876421 11
Q ss_pred h-HHHHHHHHHH---HHhcCcEEEeeee---------------------------ECC--EeEEEEEecCCCCcHHHHHH
Q 038818 424 A-NELNRKLLES---INASGQLYVSHGM---------------------------VAG--IYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 424 ~-~~~~~~l~~~---l~~~g~~~~~~~~---------------------------~~~--~~~lR~~~~~~~tt~~did~ 470 (486)
. .....++... ..+.|..|-.+.. ..+ .+++|+|+. +++|++|||+
T Consensus 399 v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g-~ynt~eDvd~ 477 (805)
T PLN02724 399 VGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFG-YMSTFEDCQK 477 (805)
T ss_pred eCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcC-ccCCHHHHHH
Confidence 1 1111122111 1122222111100 011 378999995 7888889999
Q ss_pred HHHHHHHH
Q 038818 471 AWKVVQEK 478 (486)
Q Consensus 471 ~i~~l~~~ 478 (486)
+++.|++.
T Consensus 478 lv~~l~~~ 485 (805)
T PLN02724 478 FIDFIISS 485 (805)
T ss_pred HHHHHHHH
Confidence 99999985
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=205.68 Aligned_cols=330 Identities=13% Similarity=0.099 Sum_probs=211.0
Q ss_pred CCCCCcceecCCCCCHHHHHHHHHHhhcCCC--ccccc-cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch
Q 038818 71 WQSPYYFAYFPSSGSIAGFLGEMLSSGFNVV--GFNWM-SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC 147 (486)
Q Consensus 71 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~--~~~~~-~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt 147 (486)
+.+-.|+|+.. .+.....+.+.+..+.+.. ...+. ..+...++| +.+++++|.+ ..++++||+
T Consensus 59 ~~~~~YL~l~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~---------~~~~~~sG~ 124 (407)
T PRK07179 59 LQSNDYLNLSG-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFE----KKLAAFTGFE---------SCLLCQSGW 124 (407)
T ss_pred eecCCccCCCC-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHH----HHHHHHhCCC---------cEEEECCHH
Confidence 34556777652 2333344444444332221 11111 123334444 5678888875 358899999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~ 227 (486)
+||..++.+... ++..|+++...|.++...++..|. +++.++ ..|+++|+++|++..
T Consensus 125 ~An~~~l~~l~~-----------~g~~v~~~~~~h~s~~~~~~~~g~---~~~~~~-------~~d~~~l~~~l~~~~-- 181 (407)
T PRK07179 125 AANVGLLQTIAD-----------PNTPVYIDFFAHMSLWEGVRAAGA---QAHPFR-------HNDVDHLRRQIERHG-- 181 (407)
T ss_pred HHHHHHHHHhCC-----------CCCEEEEECCcCHHHHHHHHHCCC---eEEEec-------CCCHHHHHHHHHhcC--
Confidence 999888776543 456788899999999988888887 665443 359999999987531
Q ss_pred CCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhc--CC-CCCCceeeccccccCCCC
Q 038818 228 GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID--GI-EGADSFSLNAHKWFFTTL 304 (486)
Q Consensus 228 g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~--~~-~~aDsi~~~~hK~l~~p~ 304 (486)
+.+|++..+++++|.+.|+++|.++|++||+++|+|++|+.+... +..+..+. ++ ..+|.++.++||+++.+
T Consensus 182 ---~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g-~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~- 256 (407)
T PRK07179 182 ---PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHG-PQGAGLVAELGLTSRVHFITASLAKAFAGR- 256 (407)
T ss_pred ---CeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcC-CCCCchHHhcCCCCCCCEEEeechHhhhcc-
Confidence 457888889999999999999999999999999999999754321 11111111 22 35799999999999753
Q ss_pred cceEEEeeCchHHHHHhc-CCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 038818 305 DCCCLWVKNPNALIKALS-TNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQL 382 (486)
Q Consensus 305 ~~g~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~ 382 (486)
+|+++.+++ ... .+. ...++... ++-. ....++..+++.+ +...+..++..+++++
T Consensus 257 -~G~l~~~~~-~~~-~~~~~~~~~~~~-----------------~t~~~~~~aa~~aal~~~--~~~~~~~~~l~~~~~~ 314 (407)
T PRK07179 257 -AGIITCPRE-LAE-YVPFVSYPAIFS-----------------STLLPHEIAGLEATLEVI--ESADDRRARLHANARF 314 (407)
T ss_pred -CeEEEeCHH-HHH-HHHHhCcCeeeC-----------------CCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHH
Confidence 788877643 222 221 11111111 1101 1112233334433 2234567888999999
Q ss_pred HHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEE---EeeeeECCEeEEEEEec
Q 038818 383 FQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLY---VSHGMVAGIYFIRFAVG 459 (486)
Q Consensus 383 l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~~~~~lR~~~~ 459 (486)
|++.|+++ ++++.. ..+++.+.+.. ......+.+.|.++|+.. ..+....+..++|++++
T Consensus 315 l~~~L~~~-g~~v~~--~~~i~~l~~~~--------------~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~ 377 (407)
T PRK07179 315 LREGLSEL-GYNIRS--ESQIIALETGS--------------ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLN 377 (407)
T ss_pred HHHHHHHc-CCCCCC--CCCEEEEEeCC--------------HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEEC
Confidence 99999987 777652 34677776532 112346677777888741 22222234578999995
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~l 482 (486)
..+|++||++++++|+++.++.
T Consensus 378 -~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 378 -ADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhh
Confidence 5778889999999999987653
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=196.72 Aligned_cols=337 Identities=14% Similarity=0.117 Sum_probs=233.0
Q ss_pred CcCCCCCCcceecCCCCCHHHHHHHHHHhh-cCCCc--cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcC
Q 038818 68 ITHWQSPYYFAYFPSSGSIAGFLGEMLSSG-FNVVG--FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQG 144 (486)
Q Consensus 68 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~-~n~~~--~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ 144 (486)
..+|.+-.|+|.-..+. ....+.+.+..+ ....+ ......+...+| .+.+++++|.+. .++.+
T Consensus 41 ~~nf~SNdYLGLa~~~~-~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~L----E~~lA~f~g~e~---------al~f~ 106 (388)
T COG0156 41 VLNFCSNDYLGLASHPE-LIEAAKAAIRRYGVGAGGSRLISGTSDLHVEL----EEELADFLGAEA---------ALLFS 106 (388)
T ss_pred eEeeeccCcccccCCHH-HHHHHHHHHHHhCCCCCCcCcccCCcHHHHHH----HHHHHHHhCCCc---------EEEEc
Confidence 45667778999854422 223333333332 11111 112223333444 456888888874 47777
Q ss_pred CchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHH
Q 038818 145 TTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLD 224 (486)
Q Consensus 145 ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~ 224 (486)
+|-.||+..+.+... ++++|+..+..|.|+..+++..+. +++.++. .|+++||++|++.
T Consensus 107 SGy~AN~~~i~~l~~-----------~~dli~~D~lnHASiidG~rls~a---~~~~f~H-------nD~~~Le~~l~~~ 165 (388)
T COG0156 107 SGFVANLGLLSALLK-----------KGDLIFSDELNHASIIDGIRLSRA---EVRRFKH-------NDLDHLEALLEEA 165 (388)
T ss_pred ccchhHHHHHHHhcC-----------CCcEEEEechhhhhHHHHHHhCCC---cEEEecC-------CCHHHHHHHHHhh
Confidence 789999777666544 688999999999999999999999 8888864 5899999999986
Q ss_pred HHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhc--CCC--CCCceeecccccc
Q 038818 225 IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID--GIE--GADSFSLNAHKWF 300 (486)
Q Consensus 225 ~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~--~~~--~aDsi~~~~hK~l 300 (486)
...+..+.+|+.....++.|.+.||++|+++|++||+|+.||.||+.+.+. +..+.... |+. .+|.++.+..|.+
T Consensus 166 ~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G-~~GrG~~e~~g~~~~~vdi~~gTlsKAl 244 (388)
T COG0156 166 RENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLG-PNGRGLAEHFGLEPEEVDIIVGTLGKAL 244 (388)
T ss_pred hccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccC-CCCccHHHHhCCCCccceEEEEEchhhh
Confidence 543325678999999999999999999999999999999999999876653 23333221 333 4589999999999
Q ss_pred CCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHH
Q 038818 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMA 380 (486)
Q Consensus 301 ~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a 380 (486)
+. .|.++.-+............+|++.... .+..+.++..+++.+ +...++.++..+++
T Consensus 245 Gs---~Gg~v~g~~~~~d~L~~~ar~~ifStal----------------pP~~aaa~~~al~~l--~~~~~~r~~L~~~~ 303 (388)
T COG0156 245 GS---SGGYIAGSAALIDYLRNRARPFIFSTAL----------------PPAVAAAALAALRIL--EEGPERRERLQELA 303 (388)
T ss_pred cc---cCceeeCcHHHHHHHHHhCCceeccCCC----------------CHHHHHHHHHHHHHH--HhCHHHHHHHHHHH
Confidence 83 4566666655443333445677765321 012233444455544 34456778888999
Q ss_pred HHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE---EEeeeeECCEeEEEEE
Q 038818 381 QLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL---YVSHGMVAGIYFIRFA 457 (486)
Q Consensus 381 ~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~~~~~~~lR~~ 457 (486)
.++++.+... ++.+ .+..++++.+.+.+ +....++.+.+.++|+. +..|++..+...||++
T Consensus 304 ~~~~~~~~~~-~~~~-~~s~s~I~pv~~gd--------------~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~ 367 (388)
T COG0156 304 AFFRSLLKAL-GLVL-LPSESPIIPVILGD--------------EERALEASRALLEEGIYVSAIRPPTVPKGTARLRIT 367 (388)
T ss_pred HHHHHHHHhc-CCcc-CCCCCCeeeeEeCC--------------HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEE
Confidence 9999777664 5655 35567888887765 34456777778777874 3456667788999999
Q ss_pred ecCCCCcHHHHHHHHHHHHHH
Q 038818 458 VGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~ 478 (486)
++ ...|++||+++++++.++
T Consensus 368 lt-a~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 368 LT-AAHTEEDIDRLAEALSEV 387 (388)
T ss_pred ec-CCCCHHHHHHHHHHHHhh
Confidence 96 456777999999999875
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=204.55 Aligned_cols=342 Identities=11% Similarity=-0.029 Sum_probs=215.4
Q ss_pred eecCCCCCHHHH-HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEc-CCchHHHHHHHH
Q 038818 78 AYFPSSGSIAGF-LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQ-GTTCEAILCTLA 155 (486)
Q Consensus 78 ~~~~~~~~~~~~-~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t-~ggt~a~~~al~ 155 (486)
-|.+++...+.. +.+.+...+- .....++.+.++.+++++.+++++|.++.. ..+++ ++||+++..++.
T Consensus 15 ~f~~Gp~~~~~~~v~~a~~~~~~---~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~------~v~~~~gs~T~~~~~~~~ 85 (378)
T PRK03080 15 RFSSGPCKKRPGWQLEALADALL---GRSHRQKPVKALLKRVIEGTRELLSLPEGY------EVGIVPGSDTGAWEMALW 85 (378)
T ss_pred CcCCCCcCCChHHHHHHHHhhhc---ccCcCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEECCchHHHHHHHHH
Confidence 355555554433 5555543321 111234567888889999999999996542 56666 588888765554
Q ss_pred HHHHHHHHHccccCCCCeEEEecCCCchHHHH--HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEE
Q 038818 156 AARDQILNEIGRENISRLVVYGSDQTHSALQK--AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLF 233 (486)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~--a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~ 233 (486)
.... . ++..+++ ...|.+-.. +++.+|+. +++.++.+. ....|+++++. + ..
T Consensus 86 ~l~~----~------~~~~vi~-~g~f~~~~~~~~~~~~g~~--~v~~~~~~~--g~~~d~~~i~~-----~------~~ 139 (378)
T PRK03080 86 SLLG----A------RRVDHLA-WESFGSKWATDVVKQLKLE--DPRVLEADY--GSLPDLSAVDF-----D------RD 139 (378)
T ss_pred hcCC----C------CcceEEE-eCHHHHHHHHHHHhhcCCC--CceEeccCC--CCCCCHhhcCC-----C------CC
Confidence 4311 0 2444444 356666333 33555641 567777764 24778776432 1 24
Q ss_pred EEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeC
Q 038818 234 LCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKN 313 (486)
Q Consensus 234 vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~ 313 (486)
|.+++.+|.+|.+.|+++|++ +++|++++||++++.+....+- ..+|++.+++|||+++|.|+|++++++
T Consensus 140 V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv--------~~iD~~~~s~~K~l~~P~G~g~l~v~~ 209 (378)
T PRK03080 140 VVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDW--------SKLDVYTFSWQKVLGGEGGHGMAILSP 209 (378)
T ss_pred EEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCH--------HHCcEEEEehhhhCCCCCceEEEEECH
Confidence 889999999999999999999 8899999999999887765542 247999999999999999999999997
Q ss_pred chHHHHHhcCC-----cccccCccCCCCCccCCCCccccCCCC--CCc---hHHHHHHHHhchH-HHHHHHHHHHHHHHH
Q 038818 314 PNALIKALSTN-----PEFLRNKASDSKQVVDYKDWQITLSRR--FRA---LKLWLVLRSFGVA-NLRNFLRSHVRMAQL 382 (486)
Q Consensus 314 ~~~~~~~~~~~-----~~y~~~~~~~~~~~~~~~~~~~~~sr~--~~~---l~~~~~l~~~g~~-g~~~~~~~~~~~a~~ 382 (486)
+.. .+.-... +.|+.... .........+.+.. ... .++..+++.+-.. |++++.++..+++++
T Consensus 210 ~~~-~~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~ 283 (378)
T PRK03080 210 RAV-ERLESYTPARPIPKFFRLTK-----GGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASV 283 (378)
T ss_pred HHH-HhhhcccCCCCCchhheecc-----chHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 643 2211111 11110000 00000001111111 111 2335577777666 899999999999999
Q ss_pred HHHHHhCCCCeEEecC-C--Ce-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEe
Q 038818 383 FQELVGGDNRFEIVAP-R--NF-AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAV 458 (486)
Q Consensus 383 l~~~L~~~~~~~~~~~-~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~ 458 (486)
+++.|+++++++++.+ + .. .+++|++.+.. .....++..++.++|++...+..-...+.+|+++
T Consensus 284 l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~------------~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~ 351 (378)
T PRK03080 284 LYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ------------AAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWC 351 (378)
T ss_pred HHHHHHhCCCcccccCCccccCccEEEEEcCCch------------HHHHHHHHHHHHHcCCeeccccccCCCCcEEEec
Confidence 9999999977777642 2 23 47788765310 0122334555656665432221111246799998
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 459 GATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 459 ~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+ .+++++||++++++|+++++++-
T Consensus 352 ~-~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 352 G-PTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 5 68888999999999999887653
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=199.58 Aligned_cols=301 Identities=12% Similarity=0.086 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
..+..++.+.+++++|.+ .+++++||++||..++.+... +++.|+++...|.++..+++.
T Consensus 82 ~~~~~~le~~ia~~~g~~---------~~ii~~~~~~a~~~~~~~l~~-----------~gd~vi~~~~~~~s~~~~~~~ 141 (393)
T TIGR01822 82 QDIHKELEAKIAAFLGTE---------DTILYASCFDANGGLFETLLG-----------AEDAIISDALNHASIIDGVRL 141 (393)
T ss_pred hHHHHHHHHHHHHHhCCC---------cEEEECchHHHHHHHHHHhCC-----------CCCEEEEeccccHHHHHHHHh
Confidence 344456667888998874 357778889998765544322 677899999999999999888
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.+. ..+.++ .+|+++|+++|++..+.+..+.+|+..+..+++|.+.|+++|+++|++||+++++|++|+.
T Consensus 142 ~~~---~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~ 211 (393)
T TIGR01822 142 CKA---KRYRYA-------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHAT 211 (393)
T ss_pred cCC---ceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence 877 554432 4799999999987543333456788888889999999999999999999999999999964
Q ss_pred hhccCccchh--hhcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 272 SACICPEFRH--FIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 272 ~~~~~~~~~~--~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
+.... .... ...++ ..+|.++.++||+++++ ..|+++.+ +...........+|.. .+
T Consensus 212 g~~~~-~~~~~~~~~~~~~~~di~~~s~sK~l~g~-r~G~~~~~-~~~~~~l~~~~~~~~~-----------------~~ 271 (393)
T TIGR01822 212 GFLGP-TGRGSHELCGVMGRVDIITGTLGKALGGA-SGGFTTAR-KEVVELLRQRSRPYLF-----------------SN 271 (393)
T ss_pred cCcCC-CCCchHHhcCCCCCCeEEEEEChHHhhCC-CcEEEEeC-HHHHHHHHHhCcccee-----------------cC
Confidence 44321 1111 01122 25889999999998765 45776654 3333222111111211 11
Q ss_pred CCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 349 SRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 349 sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
+.... ..++..++..+ +..+++.++..++++++.+.|++. ++++. ++..+++.+.+.+ ...
T Consensus 272 ~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~--------------~~~ 333 (393)
T TIGR01822 272 SLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK-PADHPIIPVMLYD--------------AVL 333 (393)
T ss_pred CCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC--------------HHH
Confidence 11111 11223333332 334567788899999999999876 77764 3344566655432 122
Q ss_pred HHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..++.+.|.++|+.+ .+..+ .+...+|++++ ..++++||+++++.|+++.+++
T Consensus 334 ~~~l~~~L~~~gI~v-~~~~~~~~~~~~~~iRis~~-~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 334 AQRFARRLLEEGIYV-TGFFYPVVPKGQARIRVQIS-AAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred HHHHHHHHHHCCeeE-eeeCCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 456777888888643 33221 23457999984 6778889999999999987654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=200.60 Aligned_cols=306 Identities=18% Similarity=0.147 Sum_probs=192.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.+|...++|+ .+++++|.+ .++++++||++++.++.+.... +++.|++++.+|+++.
T Consensus 38 ~~~~~~~l~~----~la~~~~~~---------~~~~~~~Gs~a~~~~l~~~~~~----------~gd~Vl~~~~~~~~~~ 94 (353)
T PLN02721 38 YDPTALRLEE----EMAKIFGKE---------AALFVPSGTMGNLISVLVHCDV----------RGSEVILGDNSHIHLY 94 (353)
T ss_pred CCHHHHHHHH----HHHHHhCCc---------eeEEecCccHHHHHHHHHHccC----------CCCeEEEcCccceehh
Confidence 3455455554 567777754 3578888899988776665431 4667888999999877
Q ss_pred H---HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC-CccEEEEeec-CCccccccCC---chHHHHHHHH
Q 038818 187 K---AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG-LIPLFLCATV-GTTAITTVDP---LGPLCDIAKR 258 (486)
Q Consensus 187 ~---a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g-~~p~~vv~~~-gtt~~G~idp---l~~I~~i~~~ 258 (486)
+ .+...|+ +++.+|.++ ++.+|+++|+++|++....+ ..+.+|+++. .++++|.+-| +++|.++|++
T Consensus 95 ~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~ 169 (353)
T PLN02721 95 ENGGISTLGGV---HPRTVKNNE--DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKR 169 (353)
T ss_pred cccchhhhcCc---eeEecCCCc--CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHH
Confidence 6 4677788 999998874 56899999999997432111 1345666655 4566787644 8899999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
+|+++|+|+||..+........ ......++|++++++||++++|. |.+++.+++......... .+..
T Consensus 170 ~g~~livD~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~sK~l~~~~--G~~~~~~~~~~~~~~~~~-~~~~--------- 236 (353)
T PLN02721 170 HGLKLHIDGARIFNASVALGVP-VHRLVKAADSVSVCLSKGLGAPV--GSVIVGSKSFIRKAKRLR-KTLG--------- 236 (353)
T ss_pred cCCEEEEEchhhhcchhhhCCC-HHHHhhhCCEEEEecccccCCce--eeEEecCHHHHHhHHHHH-HhcC---------
Confidence 9999999998743221111111 11112478999999999998774 444445554433211100 0000
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-ecCCCeeEEEEEeecCCCCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI-VAPRNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~~~~~~~~v~f~~~~~~~~~~~ 417 (486)
++..........++..+ +...+.+++..++++++.+.|++++++++ +.++..+++.+++....
T Consensus 237 ---------~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----- 300 (353)
T PLN02721 237 ---------GGMRQVGVLAAAALVAL--QENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGS----- 300 (353)
T ss_pred ---------CCeehhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCc-----
Confidence 00000111111122211 22223345556788899999999888866 55666777777765310
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
......+.++|.++|+.+... +..++|+++ ++.++++|+++++++|++++..
T Consensus 301 -------~~~~~~~~~~L~~~gi~v~~~----~~~~lR~~~-~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 301 -------RITAEKLCKSLEEHGVLLMPG----NSSRIRVVT-HHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred -------cccHHHHHHHHHhCCcEEecC----CCceEEEEe-cCcCCHHHHHHHHHHHHHHhhc
Confidence 011346777787788754332 346899998 4577889999999999987653
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=201.33 Aligned_cols=296 Identities=17% Similarity=0.079 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH---HHH
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK---AAQ 190 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~---a~~ 190 (486)
...++.+++++++| ++ .+++++|||+++..++.+... +++.|+++..+|+++.+ .+.
T Consensus 33 ~~~~l~~~~a~~~g-~~--------~~~~~~~gt~a~~~~~~~l~~-----------~gd~v~~~~~~~~~~~~~~~~~~ 92 (338)
T cd06502 33 TTAKLEARAAELFG-KE--------AALFVPSGTAANQLALAAHTQ-----------PGGSVICHETAHIYTDEAGAPEF 92 (338)
T ss_pred HHHHHHHHHHHHhC-CC--------eEEEecCchHHHHHHHHHhcC-----------CCCeEEEecCcceeeecCCcHHH
Confidence 34556678899998 33 578999999998877766532 56778889999988654 355
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC-CCccEEEEeecCCcccc--ccCCchHHHHHHHHhCceEEeec
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA-GLIPLFLCATVGTTAIT--TVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~-g~~p~~vv~~~gtt~~G--~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
..|+ +++.+|.+ ++.+|+++|++++++..+. ...+.+|+++.++++.| ..+++++|+++|+++|+++|+|+
T Consensus 93 ~~g~---~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 93 LSGV---KLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDG 166 (338)
T ss_pred HcCc---eEEeecCC---CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeech
Confidence 6788 89999875 3589999999999753211 11355788888887633 24678899999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
||..+....... ........+|+++.++||+++.|. |.+++.+++...........+-
T Consensus 167 a~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~------------------- 224 (338)
T cd06502 167 ARLANAAAALGV-ALKTYKSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAG------------------- 224 (338)
T ss_pred HHHHHHHHhcCC-CHHHHHhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhC-------------------
Confidence 985332211110 111111368999999999999875 3355445544332211111000
Q ss_pred CCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 348 ~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
.+.+..++..++++..+...++.+..++..++++++.+.|+++ ++.+ .++..+++.++.... ...
T Consensus 225 ~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~~~v~~~~~-------------~~~ 289 (338)
T cd06502 225 GGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGLE-SEVQTNIVLLDPVEA-------------NAV 289 (338)
T ss_pred CChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCc-ccccCCeEEEecCCc-------------cHH
Confidence 0001223344455555544567778889999999999999988 4543 356678888876432 223
Q ss_pred HHHHHHHHH---hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 428 NRKLLESIN---ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 428 ~~~l~~~l~---~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
..++.+.+. ++|+. +.+. . ..++|+++ +..++++|++++++++++
T Consensus 290 ~~~l~~~l~~~~~~gi~-~~~~--~-~~~lRi~~-~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 290 FVELSKEAIERRGEGVL-FYAW--G-EGGVRFVT-HWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHHHHHhhhCCEE-EEec--C-CCeEEEEe-ecCCCHHHHHHHHHHHhc
Confidence 334444443 56764 3322 2 26899998 467788899999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=190.30 Aligned_cols=306 Identities=21% Similarity=0.188 Sum_probs=198.6
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|..+|....+| +++++++|. . .++|+++||+||..+|.+... +.-.|++...+
T Consensus 28 ~~~YG~D~~~~~~e----~~~ae~~g~-~--------a~~Fv~sGT~aN~lal~~~~~-----------~~~~vi~~~~a 83 (342)
T COG2008 28 DDVYGEDPTTNALE----QRIAELFGK-E--------AALFVPSGTQANQLALAAHCQ-----------PGESVICHETA 83 (342)
T ss_pred CCCCCCCHHHHHHH----HHHHHHhCC-c--------eEEEecCccHHHHHHHHHhcC-----------CCCeEEEeccc
Confidence 45666677666665 567888887 3 579999999999999998774 67788899999
Q ss_pred chHHHHH--HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH-HCCCccEEEEeecCCccccccCC---chHHHHH
Q 038818 182 HSALQKA--AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI-QAGLIPLFLCATVGTTAITTVDP---LGPLCDI 255 (486)
Q Consensus 182 H~s~~~a--~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~-~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i 255 (486)
|...+.+ ...++ ++..++.++..+|.|++++++..|..+- -....|.++..+..+ ..|.+-| |++|.++
T Consensus 84 Hi~~~E~Ga~~~~~----~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~GtVy~l~el~~i~~~ 158 (342)
T COG2008 84 HIYTDECGAPEFFG----GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGGTVYPLDELEAISAV 158 (342)
T ss_pred cceecccCcHHHHc----CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccC-CCceecCHHHHHHHHHH
Confidence 9887764 34444 2334455544578999999999988621 122346555555544 7798855 6677888
Q ss_pred HHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 256 AKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
||++|+.||+|||.-+..+..-. ......-.++|++++.+.|.++.| .|.+++-+.+..++.- |.....
T Consensus 159 ~k~~~l~LHmDGAR~~nA~valg-~~~~~~~~~~D~v~~~~tK~g~~~--~gAiv~gn~~~~~~a~-----~~rK~~--- 227 (342)
T COG2008 159 CKEHGLPLHMDGARLANALVALG-VALKTIKSYVDSVSFCLTKGGGAP--VGAIVFGNRDFAKRAR-----RWRKRA--- 227 (342)
T ss_pred HHHhCCceeechHHHHHHHHHcC-CCHHHHHhhCCEEEEecccCCcce--eeeEEEcCHHHHHHHH-----HHHHHh---
Confidence 99999999999986444332211 111111248999999999999988 4555555554433221 111100
Q ss_pred CCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCC
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGL 415 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~ 415 (486)
+ ++-|..+-+++ ..+-++..+-+....++..++|++|.+.|.+.||+++..++++|+|.+++....
T Consensus 228 G----------gl~~k~r~laA-~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~--- 293 (342)
T COG2008 228 G----------GLMRKARFLAA-QGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESA--- 293 (342)
T ss_pred c----------ccHhhhhHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChHH---
Confidence 0 01111121111 111222334455666777788999999999889999998889999988876421
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECC-E-eEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAG-I-YFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~-~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.+.+...|..+.. ..+.+ . ..+|++. ++.|+++|||+++..++++.
T Consensus 294 ----------------i~~l~~~~~~~~~-~~~~~~~~~~vRfvt-s~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 ----------------IEALRLAGALFYR-GVLIGAHGEIVRFVT-SWATSEEDVDELVAAIKALL 341 (342)
T ss_pred ----------------HHHHHhhchhhee-eeeccCCCceEEEEe-eccCCHHHHHHHHHHHHHhh
Confidence 1223333432211 12222 2 4799986 79999999999999998764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=195.82 Aligned_cols=319 Identities=16% Similarity=0.098 Sum_probs=212.1
Q ss_pred hhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEE
Q 038818 96 SGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVV 175 (486)
Q Consensus 96 ~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v 175 (486)
...+.+...|...+...+++..+.+++...+|.+.. ....++++|||+++..++.+... ++.+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-----~~~~~~~~~~t~a~~~~~~~~~~-----------~g~~v 86 (350)
T cd00609 23 AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVP-----PEEIVVTNGAQEALSLLLRALLN-----------PGDEV 86 (350)
T ss_pred HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----cceEEEecCcHHHHHHHHHHhCC-----------CCCEE
Confidence 345555556667777889999999999998875332 13688999999988776666533 56778
Q ss_pred EecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCH--HHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHH
Q 038818 176 YGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTP--ESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLC 253 (486)
Q Consensus 176 ~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~--~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~ 253 (486)
+++...|.++..+++..|. +++.+|+++. +.++. +.+++.+.+ .+.+|+++.+++++|.+.|++++.
T Consensus 87 l~~~~~~~~~~~~~~~~~~---~~~~i~~~~~--~~~~~~~~~~~~~~~~------~~~~v~i~~~~~~tG~~~~~~~l~ 155 (350)
T cd00609 87 LVPDPTYPGYEAAARLAGA---EVVPVPLDEE--GGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELE 155 (350)
T ss_pred EEcCCCchhHHHHHHHCCC---EEEEEecccc--cCCccCHHHHHhhcCc------cceEEEEECCCCCCCcccCHHHHH
Confidence 8999999999999999999 9999999863 34544 555544332 245788888999999999866555
Q ss_pred ---HHHHHhCceEEeeccccchhccCccchh-hhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccc
Q 038818 254 ---DIAKRYSIWVHVDAAYAGSACICPEFRH-FIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 254 ---~i~~~~g~~lhvD~a~g~~~~~~~~~~~-~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
++|+++|+++|+|+||+++......... ...+....|.+..++||+++ .+.++|+++++++.... .+.....+.
T Consensus 156 ~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~-~~~~~~~~~ 234 (350)
T cd00609 156 ELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLE-RLKKLLPYT 234 (350)
T ss_pred HHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHH-HHHHHHHhc
Confidence 8999999999999999876543221100 01122357888899999998 55678988887744433 222111110
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEe
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRV 408 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~ 408 (486)
. ..........+...++... ++++++.++..++++++.+.|++.+...+..++....+.+.+
T Consensus 235 ~-----------------~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~ 296 (350)
T cd00609 235 T-----------------SGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDL 296 (350)
T ss_pred c-----------------cCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEec
Confidence 0 0000112233333444322 678888899999999999999988554433333444555555
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
... ...+.+.+.+.+.|+.......+. +..++|++++.+ ++||++++++|++
T Consensus 297 ~~~--------------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~---~~~i~~~~~al~~ 350 (350)
T cd00609 297 PEG--------------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP---EEELEEALERLAE 350 (350)
T ss_pred CCC--------------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC---HHHHHHHHHHhhC
Confidence 431 112344555666687544333332 567999999654 7799999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=192.16 Aligned_cols=336 Identities=12% Similarity=0.006 Sum_probs=211.4
Q ss_pred CCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHH
Q 038818 71 WQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAI 150 (486)
Q Consensus 71 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~ 150 (486)
+++.-|+|.-.. +...+.+.+.+..+.++. ..+...........++++.+++++|.+. .+++++|++++
T Consensus 6 ~~~~~~~~~~~~-~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~~~---------~iv~~sg~~a~ 74 (349)
T cd06454 6 FCSNDYLGLANH-PEVIEAAKEALDKYGVGA-GGSRLISGTSDLHEELEEELAEFHGKEA---------ALVFSSGYAAN 74 (349)
T ss_pred cccCCccccCCC-HHHHHHHHHHHHHhCCCC-CCcCeecCCchHHHHHHHHHHHHhCCCC---------EEEeccHHHHH
Confidence 345557776422 333444445554332221 1111111234555667788899998753 46777778888
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
..++.+... +++.|+++...|+++..+++..|+ +++.++ .+|++.+++++++.. ....
T Consensus 75 ~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~-------~~~~~~le~~i~~~~-~~~~ 132 (349)
T cd06454 75 DGVLSTLAG-----------KGDLIISDSLNHASIIDGIRLSGA---KKRIFK-------HNDMEDLEKLLREAR-RPYG 132 (349)
T ss_pred HHHHHHhcC-----------CCCEEEEehhhhHHHHHHHHHcCC---ceEEec-------CCCHHHHHHHHHHhh-ccCC
Confidence 877665542 567788899999999999999998 887775 348889999987643 1234
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchh--hhc-CCCCCCceeeccccccCCCCcce
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRH--FID-GIEGADSFSLNAHKWFFTTLDCC 307 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~--~~~-~~~~aDsi~~~~hK~l~~p~~~g 307 (486)
+.+|+++.+++++|.+.|+++|+++|+++|+++++|++|+.+.... .... ... ...+.|+++.++||+++.+ + |
T Consensus 133 ~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-g-G 209 (349)
T cd06454 133 KKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGP-HGRGVEEFGGLTDDVDIIMGTLGKAFGAV-G-G 209 (349)
T ss_pred CeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCChhhhccccccCcEEEeechhhhccc-C-C
Confidence 5678888899999999999999999999999999999997443321 1010 111 1236889999999999863 2 5
Q ss_pred EEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 038818 308 CLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~ 386 (486)
+++.+ +..+.........+.. ..+.. ...+++..+++.+-. +.+..++..++++++.+.
T Consensus 210 ~i~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~ 269 (349)
T cd06454 210 YIAGS-KELIDYLRSYARGFIF-----------------STSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRG 269 (349)
T ss_pred EEECC-HHHHHHHHHhchhhhc-----------------cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 55544 4333322211111111 00101 112233344443322 456778888999999999
Q ss_pred HhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee---ECCEeEEEEEecCCCC
Q 038818 387 VGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM---VAGIYFIRFAVGATLT 463 (486)
Q Consensus 387 L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~~~~~lR~~~~~~~t 463 (486)
|+++ ++++..++...++++...+ .....++.+.|.++|+.+..... ..+..++|+++. ...
T Consensus 270 l~~~-g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~-~~~ 333 (349)
T cd06454 270 LKEL-GFPVGGSPSHIIPPLIGDD--------------PAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLS-AAH 333 (349)
T ss_pred HHhc-CCcccCCCCCcEEEEeCCC--------------hHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEe-CCC
Confidence 9887 7777655444444443321 12245778888888875433211 112468999984 567
Q ss_pred cHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEK 478 (486)
Q Consensus 464 t~~did~~i~~l~~~ 478 (486)
+++|+++++++|+++
T Consensus 334 ~~~~i~~~~~~l~~~ 348 (349)
T cd06454 334 TKEDIDRLLEALKEV 348 (349)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888999999999875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=197.38 Aligned_cols=331 Identities=11% Similarity=0.122 Sum_probs=217.3
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
+..+.+.+...+......|...++..++++.+.+++.+.+|.+.+ ....++|+|+++++..++.....
T Consensus 48 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~------- 115 (391)
T PRK08361 48 PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD-----VDNVIVTAGAYEATYLAFESLLE------- 115 (391)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----cccEEEeCChHHHHHHHHHHhcC-------
Confidence 344555555555443345655566788999999999888775322 12789999999998777665532
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
++..|+++..+|.++...+...|+ +++.+|+++++++.+|+++|++.+++.+ .+|+++.++|++|.+
T Consensus 116 ----~g~~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~------~~v~i~~p~NPtG~~ 182 (391)
T PRK08361 116 ----EGDEVIIPDPAFVCYVEDAKIAEA---KPIRIPLREENEFQPDPDELLELITKRT------RMIVINYPNNPTGAT 182 (391)
T ss_pred ----CCCEEEEcCCCCcccHHHHHHcCC---EEEEEecCCccCCCCCHHHHHHhccccc------EEEEEeCCCCCCCcC
Confidence 567788899999999999999999 9999999865567899999999887543 367788899999999
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhc
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~ 322 (486)
-| +++|+++|+++++++++|++|+.+.................+.++.+++|.++.| ..+|+++..+ ........
T Consensus 183 ~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~-~~~~~~~~ 261 (391)
T PRK08361 183 LDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPE-QVIKDMIK 261 (391)
T ss_pred cCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCH-HHHHHHHH
Confidence 88 8899999999999999999997653321111111111113456788999998755 2378888753 33332211
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--h--HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--V--ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~--~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
. ..+... ....+...++...+. . +.+++..+...++.+.+.+.|++++++++. +
T Consensus 262 ~-~~~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~ 319 (391)
T PRK08361 262 L-HAYIIG--------------------NVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVF-E 319 (391)
T ss_pred H-Hhhhcc--------------------CCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeec-C
Confidence 1 111100 011222233333331 1 346677777788889999999988788765 4
Q ss_pred CCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
|+.+.+.+ .+.+... + ..++.+.+.+ .|+.+..+..+. +..++|++++. +++++++.++.
T Consensus 320 p~g~~~~~~~l~~~~~-----------~--~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~al~~ 383 (391)
T PRK08361 320 PKGAFYVFANIDETGM-----------S--SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT---SKEKLIEAMER 383 (391)
T ss_pred CCEEEEEEEECCCCCC-----------C--HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC---CHHHHHHHHHH
Confidence 45555444 4432110 1 2345555544 576544433332 35789999963 46689999988
Q ss_pred HHHHHHH
Q 038818 475 VQEKLDG 481 (486)
Q Consensus 475 l~~~~~~ 481 (486)
|++++++
T Consensus 384 l~~~l~~ 390 (391)
T PRK08361 384 MEKALEE 390 (391)
T ss_pred HHHHHhc
Confidence 8887764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=209.55 Aligned_cols=364 Identities=14% Similarity=0.090 Sum_probs=233.2
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHH-H------HHHHhhcCCCcccccc
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFL-G------EMLSSGFNVVGFNWMS 107 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~------~~l~~~~n~~~~~~~~ 107 (486)
|+.++..-+..||. +.++.+++++++++..+|.. ...|.|.-.-+...|+++ . +++++ +.+++...++
T Consensus 43 P~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~---~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~-ytPyQ~EisQ 117 (954)
T PRK05367 43 PASIRLAEPLDLPA-ALSEAEALAELRAIASKNKV---FRSYIGQGYYGTHTPPVILRNILENPAWYTA-YTPYQPEISQ 117 (954)
T ss_pred CHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCC---CCcccCCCCCCCcCcHHHHHHHHhCcchhhc-cCCCChHHHH
Confidence 56676666677884 58999999999997766644 234555222222444444 2 33443 2344333334
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
|.....+| ...++++|+|++.. +..++.++|.+.. ++.+++... + .++..|++++..|++...
T Consensus 118 G~Leal~~--~Qt~la~LtG~~~a-------naSl~d~aTAa~e-a~~~a~~~~--~-----~~~~~vlv~~~~hP~~~~ 180 (954)
T PRK05367 118 GRLEALLN--FQTMVADLTGLEIA-------NASLLDEATAAAE-AMALAKRVS--K-----SKSNRFFVDDDVHPQTLD 180 (954)
T ss_pred HHHHHHHH--HHHHHHHHHCCChh-------hccccccHHHHHH-HHHHhhhhc--c-----CCCCEEEEcCccCHHHHH
Confidence 44434444 45999999999976 6789999887664 444444321 0 013689999999998554
Q ss_pred H----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 A----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
. ++..|+ +|+.+|.+. + ++ .++ ++.++...++.+|.+.|+++|+++||++|+++
T Consensus 181 v~~t~a~~~G~---ev~~~~~~~--d--~~--------~~~-------~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~ 238 (954)
T PRK05367 181 VLRTRAEPLGI---EVVVGDAAK--A--LD--------HDD-------VFGVLLQYPGTSGEVRDYTALIAAAHARGALV 238 (954)
T ss_pred HHHHHHHhCCC---EEEEecCcc--C--CC--------ccc-------EEEEEEecCCCCeeeccHHHHHHHHHHcCCEE
Confidence 3 566788 999998753 1 11 111 23445555778999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeecccccc-----CCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF-----FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l-----~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
+||+.+.+..++.+. .. -++|.++.++|||+ ++| ++|++++|++- .+. .|+.+.+-..+..+.
T Consensus 239 ~vda~~~Al~~l~~p-ge-----~GaDi~vgs~qkfg~P~g~GGP-~aGflavr~~~--~r~---lpgrivG~s~d~~g~ 306 (954)
T PRK05367 239 AVAADLLALTLLTPP-GE-----MGADIAVGSAQRFGVPMGFGGP-HAAYFAVRDAY--KRS---MPGRIVGVSVDAAGN 306 (954)
T ss_pred EEEehhhhccCCCCh-hh-----cCCCEEEeeCcccCCCCCCCCC-CEEEEEECHHH--Hhh---CCCCeeeeecccCCC
Confidence 999976443333321 11 28999999999994 444 49999999752 222 233322211111111
Q ss_pred cCCC--CccccC-CCCCCc------------hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeE
Q 038818 339 VDYK--DWQITL-SRRFRA------------LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAV 403 (486)
Q Consensus 339 ~~~~--~~~~~~-sr~~~~------------l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 403 (486)
..+. ..+-+. -|+..+ +..++++.++|.+|++++.++...+++++++.|++ +++++..++.+.+
T Consensus 307 ~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~~f~~ 385 (954)
T PRK05367 307 PALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHDSFFDT 385 (954)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCCCCe
Confidence 1110 001111 122111 22233446689999999999999999999999987 5899887777788
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
+.|++... ..++.+++.++|+.. .. .....+|+|+ +..+|++|||+++++|.
T Consensus 386 ~~~~~~~~----------------~~~i~~~l~~~gi~~-~~---~~~~~l~is~-~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 386 LTVEVGGD----------------AAAVLARALAAGINL-RR---VDDDHVGISL-DETTTREDLAALLAVFG 437 (954)
T ss_pred EEEeCCCC----------------HHHHHHHHHHCCcee-cc---ccCCEEEEEe-cccCCHHHHHHHHHHHc
Confidence 88875311 346677777888743 11 1234699999 57889999999999996
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=193.42 Aligned_cols=337 Identities=13% Similarity=0.127 Sum_probs=234.1
Q ss_pred CHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 85 SIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 85 ~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
..|..+.+.+...++.....|....+..++.+.+.+++.+.+|++... ..++++|+|+++|++.++.+..+
T Consensus 41 ~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~----~~eiivt~Ga~~al~~~~~a~~~----- 111 (393)
T COG0436 41 PTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP----EEEIIVTAGAKEALFLAFLALLN----- 111 (393)
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCeEEEeCCHHHHHHHHHHHhcC-----
Confidence 455556666665554432255577778999999999999999854321 12599999999999999888776
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI 243 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~ 243 (486)
+++.|+++++.+.+......++|. +++.+|++.. .+|.+|++.|++++.++++ +|+++.|+|||
T Consensus 112 ------pGDeVlip~P~Y~~y~~~~~~~gg---~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk------~i~ln~P~NPT 176 (393)
T COG0436 112 ------PGDEVLIPDPGYPSYEAAVKLAGG---KPVPVPLDEEENGFKPDLEDLEAAITPKTK------AIILNSPNNPT 176 (393)
T ss_pred ------CCCEEEEeCCCCcCHHHHHHhcCC---EEEEEeCCcCccCCcCCHHHHHhhcCccce------EEEEeCCCCCc
Confidence 778899999999999999999999 9999998653 3799999999999998654 89999999999
Q ss_pred cccC---CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCC-ceee-ccccccC-CCCcceEEEeeCchHH
Q 038818 244 TTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD-SFSL-NAHKWFF-TTLDCCCLWVKNPNAL 317 (486)
Q Consensus 244 G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aD-si~~-~~hK~l~-~p~~~g~~~~~~~~~~ 317 (486)
|++- .+++|+++|++||+|++.|.+|.....-...+...+.--...| .|++ +..|.++ +..-+|+++..++...
T Consensus 177 Gav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~ 256 (393)
T COG0436 177 GAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELI 256 (393)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHH
Confidence 9994 4889999999999999999999775442211222221111112 5555 5799998 4457888888755443
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG----VANLRNFLRSHVRMAQLFQELVGGDNRF 393 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 393 (486)
.... .-..++. .|. ..+...++...+. .+..+++.+...++++.+.+.|.+++++
T Consensus 257 ~~~~-~~~~~~~-----------------~~~---~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~ 315 (393)
T COG0436 257 AALR-KLKSYLT-----------------SCA---PTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGL 315 (393)
T ss_pred HHHH-HHHHhcc-----------------cCC---CHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 3221 1011111 111 2233344444442 2356666778889999999999999889
Q ss_pred EEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeEC---CEeEEEEEecCCCCcHHHHH
Q 038818 394 EIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVA---GIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 394 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~---~~~~lR~~~~~~~tt~~did 469 (486)
++..+|......|--.+.. .+ ..++.++|.++ |++.+++..+. |.+++|+++.. ++++++
T Consensus 316 ~~~~~p~Ga~Y~~~~i~~~---------~d----~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~---~~~~l~ 379 (393)
T COG0436 316 SVVKPPEGAFYLFPKIPEL---------LD----SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT---SEETLE 379 (393)
T ss_pred eeccCCCeeEEEEeecCCC---------CC----HHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec---CHHHHH
Confidence 9987677777666443321 01 23455555544 55544444443 45799999954 336899
Q ss_pred HHHHHHHHHHHHH
Q 038818 470 AAWKVVQEKLDGI 482 (486)
Q Consensus 470 ~~i~~l~~~~~~l 482 (486)
+.++.|.+..+..
T Consensus 380 ~a~~rl~~~~~~~ 392 (393)
T COG0436 380 EALRRLARFLAEY 392 (393)
T ss_pred HHHHHHHHHHHhc
Confidence 9999888877643
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=196.87 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=209.2
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHH-----HHHcc-----------c-
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQI-----LNEIG-----------R- 167 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~-----~~~~~-----------~- 167 (486)
|.......++|..+.+...++||.+.. -+=.-+|+.||+.++.+..... +.+.| +
T Consensus 87 y~g~~~~d~ie~l~~~ra~~lf~a~~a--------nvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~ 158 (493)
T PRK13580 87 YAGCQNVDTVEWEAAEHAKELFGAEHA--------YVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWE 158 (493)
T ss_pred cCCCchHHHHHHHHHHHHHHHhCCCcc--------cccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhh
Confidence 344556789999999999999998753 2445677899988777765421 00001 0
Q ss_pred ---cCCCCeEEEec---CCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCc
Q 038818 168 ---ENISRLVVYGS---DQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTT 241 (486)
Q Consensus 168 ---~~~~~~~v~~s---~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt 241 (486)
....++.|+.- .-.|.+........|... .++..++++ .++.+|++++++++.+.+ | .|++++.++
T Consensus 159 ~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~-~~~~y~vd~-~~g~iD~d~l~~~~~~~~-----p-lvii~g~S~ 230 (493)
T PRK13580 159 ALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMF-HQRSYGVDP-DTGLLDYDEIAALAREFK-----P-LILVAGYSA 230 (493)
T ss_pred hhhccCCCCEEEeecCCCCCeeecCcccchhhhee-eeEecccCc-ccCccCHHHHHHHHhhcC-----C-EEEEeCccc
Confidence 00112334322 224444332333344211 556667774 357999999999998754 4 466667777
Q ss_pred cccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHh
Q 038818 242 AITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 242 ~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~ 321 (486)
. |.+.|+++|++||++||++++||+||+.+.+....+.........+|++++++||++.+|.| |+++++++ .. +.+
T Consensus 231 ~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~-l~-~~L 306 (493)
T PRK13580 231 Y-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKE-YA-DAV 306 (493)
T ss_pred c-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHH-HH-HHH
Confidence 6 55779999999999999999999999888765433221112235799999999999988884 77777654 22 222
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-CCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-PRN 400 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~ 400 (486)
....+|+++... .....+...++..+....++++.++..+++++|++.|.+. ||.++. ..+
T Consensus 307 ~~a~P~i~gg~l-----------------~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTd 368 (493)
T PRK13580 307 DKGCPLVLGGPL-----------------PHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTD 368 (493)
T ss_pred hhCCCcccCCCc-----------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCC
Confidence 222245443210 1112222334444433445678899999999999999987 888864 245
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEE---eeeeECC---EeEEEEEecCC---CCcHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYV---SHGMVAG---IYFIRFAVGAT---LTEDRHVIAA 471 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~~~~---~~~lR~~~~~~---~tt~~did~~ 471 (486)
++++.+.+.+. +...+.+.+.|.+.|+.+- .|++..+ ...||+++... ..+++||+++
T Consensus 369 shIV~V~lg~~-------------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~i 435 (493)
T PRK13580 369 NHLVLIDVTSF-------------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEV 435 (493)
T ss_pred CCEEEEEeCCH-------------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHH
Confidence 78888887542 1122355667778887432 2333344 67899998532 2258899999
Q ss_pred HHHHHHHHHH
Q 038818 472 WKVVQEKLDG 481 (486)
Q Consensus 472 i~~l~~~~~~ 481 (486)
++.|.++++.
T Consensus 436 ad~l~~~l~~ 445 (493)
T PRK13580 436 AELIVKVLSN 445 (493)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=195.79 Aligned_cols=326 Identities=13% Similarity=0.114 Sum_probs=215.4
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCC--CCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKL--PKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~--~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
..+.+.+...+......|...++..++.+.+.+|+.+.+|. +++ +.++|+|+++++..++.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~-------~i~~t~g~~~al~~~~~~l~~------ 106 (382)
T PRK06108 40 DFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPE-------RIAVTSSGVQALMLAAQALVG------ 106 (382)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcc-------eEEEeCChHHHHHHHHHHhcC------
Confidence 34555555555433345666667789999999999999884 433 688999999998776665533
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
+++.|+++..+|..+...++..|+ +++.+|.+.+ ++|.+|+++|++.+++. +.+|+++.++|++|
T Consensus 107 -----~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p~NPtG 172 (382)
T PRK06108 107 -----PGDEVVAVTPLWPNLVAAPKILGA---RVVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSPNNPTG 172 (382)
T ss_pred -----CCCEEEEeCCCccchHHHHHHCCC---EEEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECCCCCCC
Confidence 566788888999999999999999 9999999753 35789999999988643 33677889999999
Q ss_pred ccC---CchHHHHHHHHhCceEEeeccccchhcc-CccchhhhcCC--CCCCceeeccccccCC-CCcceEEEeeCchHH
Q 038818 245 TVD---PLGPLCDIAKRYSIWVHVDAAYAGSACI-CPEFRHFIDGI--EGADSFSLNAHKWFFT-TLDCCCLWVKNPNAL 317 (486)
Q Consensus 245 ~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~-~~~~~~~~~~~--~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~ 317 (486)
.+- ++++|+++|+++|+|+++|++|+.+... .........-. ..-..+..+++|.++. +..+|+++.+++ ..
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~-~~ 251 (382)
T PRK06108 173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPA-LG 251 (382)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHH-HH
Confidence 774 5788999999999999999999875432 11111111101 1223567789998864 456898887543 32
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
. .+.....+.. .+ ...+...++...+ +.+.++++.++..++.+++.+.|++++++++
T Consensus 252 ~-~~~~~~~~~~-----------------~~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 310 (382)
T PRK06108 252 Q-VLEKLIEYNT-----------------SC---VAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEV 310 (382)
T ss_pred H-HHHHHHHhcc-----------------cC---CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 2 2211001110 00 1122222222222 4456778888888999999999988888887
Q ss_pred ecCCCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHH
Q 038818 396 VAPRNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 396 ~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~ 471 (486)
.. |..+.+ .+.+.+.. ....+.+.+. +.|+.+..+..+ .+..++|+++.. ++++++++
T Consensus 311 ~~-p~~g~~~~~~l~~~~--------------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~---~~~~l~~~ 372 (382)
T PRK06108 311 AK-PDGAMYAFFRIPGVT--------------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR---DPARLDEA 372 (382)
T ss_pred cC-CCeeEEEEEeCCCCC--------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC---CHHHHHHH
Confidence 64 444544 34443211 1234566554 457754443333 235789999953 67899999
Q ss_pred HHHHHHHHH
Q 038818 472 WKVVQEKLD 480 (486)
Q Consensus 472 i~~l~~~~~ 480 (486)
++.|+++++
T Consensus 373 l~~l~~~l~ 381 (382)
T PRK06108 373 VERLRRFLA 381 (382)
T ss_pred HHHHHHHHh
Confidence 999988654
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=193.18 Aligned_cols=346 Identities=13% Similarity=0.096 Sum_probs=215.6
Q ss_pred cCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 69 THWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 69 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
.++.+-.|+|+-...+..+..+.+.+..+-...... ...-+......++.+.+++++|.++ .++.++|+.
T Consensus 103 ~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~s-r~~~g~~~~~~ele~~lA~~~g~~~---------ai~~~~G~~ 172 (489)
T PLN02483 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSS-RVDGGTTKLHRELEELVARFVGKPA---------AIVFGMGYA 172 (489)
T ss_pred EEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCcc-ccccCCcHHHHHHHHHHHHHhCCCc---------EEEECCHHH
Confidence 455677899987544445555666666542111111 1101123444456677888888653 355566777
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
+|+.++.+... +++.|++++..|.|+..+++..|+ +++.++.+ |+++|++.|++....+
T Consensus 173 an~~~i~al~~-----------~Gd~Vi~d~~~h~s~~~~~~~~Ga---~v~~~~~~-------d~~~le~~l~~~i~~~ 231 (489)
T PLN02483 173 TNSTIIPALIG-----------KGGLIISDSLNHNSIVNGARGSGA---TIRVFQHN-------TPSHLEEVLREQIAEG 231 (489)
T ss_pred HHHHHHHHhCC-----------CCCEEEEcchhhHHHHHHHHHcCC---eEEEEeCC-------CHHHHHHHHHhhhhcc
Confidence 88755554332 677899999999999999999999 99999853 6788888877543211
Q ss_pred -------CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCC--CCCCceeeccc
Q 038818 229 -------LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGI--EGADSFSLNAH 297 (486)
Q Consensus 229 -------~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~--~~aDsi~~~~h 297 (486)
...++|++....+++|.+.++++|+++|++||+++++|+||+.+... +..+.. ..++ ..+|.++.+++
T Consensus 232 ~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G-~~G~g~~~~~~v~~~~~dI~~~SfS 310 (489)
T PLN02483 232 QPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVG-KTGRGVCELLGVDPADVDIMMGTFT 310 (489)
T ss_pred ccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccC-CCCCchHHhcCCCcccCcEEEEecc
Confidence 11235666667799999999999999999999999999999744321 111110 1122 35789999999
Q ss_pred cccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-c---hHHHHHHH
Q 038818 298 KWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-G---VANLRNFL 373 (486)
Q Consensus 298 K~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g---~~g~~~~~ 373 (486)
|.++.+ .|+++ .+++...........+.+.. ..-......+..+++.+ + .+...++.
T Consensus 311 Ks~g~~--GG~i~-~~~~li~~l~~~~~~~~~~~----------------~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~ 371 (489)
T PLN02483 311 KSFGSC--GGYIA-GSKELIQYLKRTCPAHLYAT----------------SMSPPAVQQVISAIKVILGEDGTNRGAQKL 371 (489)
T ss_pred hhcccC--ceEEE-cCHHHHHHHHHhCccccccC----------------CcCHHHHHHHHHHHHHHHhCccccchHHHH
Confidence 999764 26555 44444332211111111110 00001111222334332 1 22345567
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE----C
Q 038818 374 RSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV----A 449 (486)
Q Consensus 374 ~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~ 449 (486)
++..++++++++.|+++ ++++..+...+++.+.+... .....+.+.|.++|+.+.. ..+ .
T Consensus 372 ~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~--------------~~~~~~~~~Ll~~GI~v~~-~~fp~~p~ 435 (489)
T PLN02483 372 AQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNP--------------AKIPAFSRECLKQNVAVVV-VGFPATPL 435 (489)
T ss_pred HHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCH--------------HHHHHHHHHHHHCCcEEee-eCCCCCCC
Confidence 88899999999999998 78876555556666655431 1233567777788886543 222 2
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 450 GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 450 ~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+...+|+++. ...+++||+++++.|+++++.+
T Consensus 436 ~~~~vRi~is-a~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 436 LLARARICIS-ASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred CCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 3467999985 4567779999999999988654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=203.81 Aligned_cols=364 Identities=11% Similarity=0.020 Sum_probs=230.1
Q ss_pred hhHHhhcCCCCCCC--CCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHH-------HHhhcCCCcccc
Q 038818 35 PGYLRKRLPESAPY--NPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEM-------LSSGFNVVGFNW 105 (486)
Q Consensus 35 p~~~~~~~~~~~p~--~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------l~~~~n~~~~~~ 105 (486)
|+.++.. +..||. .+.|+.+++++++++...|.. +..|.|.-+-+.-.|+++-+. +++ +.++..
T Consensus 68 P~~i~~~-~l~lp~~~~~~sE~e~~~~~~~la~kN~~---~~~fiG~G~y~~~~P~~v~~~i~~~~~~~Ta-ytPYqa-- 140 (993)
T PLN02414 68 PKSIRLD-SMKLSKYDEGLTESQMLEHMKSLASKNKV---FKSYIGMGYYNTHVPPVILRNILENPGWYTQ-YTPYQA-- 140 (993)
T ss_pred CHHHhcC-CCCCCCCCCCCCHHHHHHHHHHHHhcCCc---cccccCCCCCCccCCHHHHHHHHhChHHHhh-cCCCch--
Confidence 4444332 556772 468999999999987666543 334554322122334444232 232 223222
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
+.+++.-+.-.+...++++|+|++.+ +..++.++|.+...+++ +.... .+ ++.+|++++..|++.
T Consensus 141 EisQG~lqal~~~Qt~ia~LtG~~~a-------naSL~d~aTAaaea~~~-a~~~~------~g-~~~~VlVs~~~hP~~ 205 (993)
T PLN02414 141 EIAQGRLESLLNYQTMITDLTGLPMS-------NASLLDEGTAAAEAMAM-CNNIL------KG-KKKKFLIASNCHPQT 205 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChh-------hEeecCChHHHHHHHHH-HHhcc------cC-CCCEEEEcCccCHhH
Confidence 22233333334556999999999986 78999999977644333 33220 01 346799999999986
Q ss_pred HHHH----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCc
Q 038818 186 QKAA----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSI 261 (486)
Q Consensus 186 ~~a~----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~ 261 (486)
...+ +..|+ +|+.+|.+. .+ ...++ . +.++++..+.+|.+.|+++|+++||++|+
T Consensus 206 ~~v~~t~a~~~Gi---eV~~v~~~~-----~~------~~~~~------v-~~vlvq~P~~~G~v~dv~~I~~~ah~~Ga 264 (993)
T PLN02414 206 IDVCQTRADGLGL---EVVVADEKD-----FD------YSSGD------V-CGVLVQYPATDGEVLDYAEFVKNAHANGV 264 (993)
T ss_pred HHHHHHhhhhcCC---EEEEecchh-----hc------cccCc------e-EEEEEecCCCCeEEcCHHHHHHHHHHcCC
Confidence 5444 45688 899998752 11 01111 1 23446666779999999999999999999
Q ss_pred eEEeeccccchhccCccchhhhcCCCCCCceeecccccc-----CCCCcceEEEeeCchHHHHHhcCCcc-cccCccCCC
Q 038818 262 WVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF-----FTTLDCCCLWVKNPNALIKALSTNPE-FLRNKASDS 335 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l-----~~p~~~g~~~~~~~~~~~~~~~~~~~-y~~~~~~~~ 335 (486)
+++| +|+..+.......... ++|+++.++|||+ ++|. +|+++++++. . ...|+ .+.... +.
T Consensus 265 L~iV-aad~lal~~l~~pge~-----GADi~vgsgqKwg~P~G~GGP~-aGflavr~~~--~---r~~PgriVG~s~-d~ 331 (993)
T PLN02414 265 KVVM-ATDLLALTMLKPPGEW-----GADIVVGSAQRFGVPMGYGGPH-AAFLATSQEY--K---RLMPGRIIGVSV-DS 331 (993)
T ss_pred EEEE-EECHHHhcCCCCHhhc-----cCcEEEECCCccccCCCCCCCC-eeEEEECHHH--H---hhCCCcccCccc-CC
Confidence 9999 8876655554322222 8999999999998 4444 8999999763 2 22343 333211 11
Q ss_pred CCccCCC---CccccCCCCC-------CchHHHHHH-----HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 336 KQVVDYK---DWQITLSRRF-------RALKLWLVL-----RSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 336 ~~~~~~~---~~~~~~sr~~-------~~l~~~~~l-----~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
.+...+. ..-.+.-|+. ...++++.+ ..+|..|++++.+++.+++.++++.|.+. ++++..++.
T Consensus 332 ~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~~~ 410 (993)
T PLN02414 332 SGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-GFQVQSLPF 410 (993)
T ss_pred CCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-CCccCCCCC
Confidence 1111110 0011111221 112333333 45688999999999999999999999875 799988888
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
+.+|+|++.. ..++.++|.++|+. +... . ...+|+|+ +..+|++|||+++++|..
T Consensus 411 f~~vt~~~~~-----------------~~~v~~~L~~~gI~-l~~~--~-~~~lrvs~-~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 411 FDTVKVKCSD-----------------ADAIADAAAKVGIN-LRVV--D-ANTVTVSF-DETTTLEDVDKLFKVFAG 465 (993)
T ss_pred cCeEEEecCC-----------------HHHHHHHHHHCCCe-eEEe--c-CCeEEEEe-eccCCHHHHHHHHHHHcc
Confidence 8899998642 24567777778873 2221 1 24699999 578899999999999964
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=198.94 Aligned_cols=337 Identities=14% Similarity=0.057 Sum_probs=215.1
Q ss_pred ecCCCCCHHHHHHHHHHhhc----CCCccccccC---hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCC-chHHH
Q 038818 79 YFPSSGSIAGFLGEMLSSGF----NVVGFNWMSS---PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGT-TCEAI 150 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~---~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~g-gt~a~ 150 (486)
|.|++...|..+.+.+..++ |.+...+..+ +.+.++..++++.+++++|.+.+. ..+||+| ||+|+
T Consensus 3 ~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~------~vvf~~gs~T~a~ 76 (355)
T cd00611 3 FSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNY------KVLFLQGGATGQF 76 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCCchHHH
Confidence 56777777777777766665 4444555555 556688889999999999986542 6788877 89887
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccC-HHHHHHHHHHHHHCCC
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLT-PESLQAAIDLDIQAGL 229 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d-~~~L~~~l~~~~~~g~ 229 (486)
..++.....+ +.+.++|++....|.+ .+.++..|+ +++.+++++++. ..+ ++..+..++++
T Consensus 77 ~~~~~~l~~~--------~~~~~~i~~g~~~~~~-~~~a~~~g~---~~~~~~~~~~g~-~~~~~~~~~~~~~~~----- 138 (355)
T cd00611 77 AAVPLNLLGD--------KGTADYVVTGAWSAKA-AKEAKRYGG---VVVIVAAKEEGK-YTKIPDVETWDLAPD----- 138 (355)
T ss_pred HHHHHhcCCC--------CCeEEEEECCHHHHHH-HHHHHhcCC---CcEEEecccccC-CCCCCCHhhcCCCCC-----
Confidence 6655543210 1145666665444444 445677798 999999864221 113 22222333332
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEE
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCL 309 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~ 309 (486)
+.+|.+++.+|.+|.+- . ++++.||+.++||++++.+....+- +..|.+..++||+++ |.|.|++
T Consensus 139 -~~lV~~~h~~t~tG~~~--~---~i~~~~g~~~~VDa~qs~g~~~idv--------~~~~~~~ss~~K~lG-P~G~g~l 203 (355)
T cd00611 139 -AAYVHYCSNETIHGVEF--D---EVPDTGGVPLVADMSSNILSRPIDV--------SKFGVIYAGAQKNLG-PAGVTVV 203 (355)
T ss_pred -CCEEEEeCCcccccEEc--c---eecccCCCeEEEEccccccCCCCCH--------HHhCEEEeecccccC-CCceEEE
Confidence 34799999999999972 2 4555699999999999887775542 123444555999875 9999999
Q ss_pred EeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHH
Q 038818 310 WVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELV 387 (486)
Q Consensus 310 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L 387 (486)
+++++.+- +.-...+.+..... ...... . ..+-. ....++..+++.+-.+ |++++.++..++++++++.|
T Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~-~-~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l 275 (355)
T cd00611 204 IVRKDLLG-KARKITPSMLNYKT-----HADNNS-L-YNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTI 275 (355)
T ss_pred EECHHHHh-hcccCCCCcccHHH-----HHhcCC-C-CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 99876442 11111111110000 000000 0 01111 1335777788888777 79999999999999999999
Q ss_pred hCCCCeE-EecC--CCe-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCC
Q 038818 388 GGDNRFE-IVAP--RNF-AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLT 463 (486)
Q Consensus 388 ~~~~~~~-~~~~--~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~t 463 (486)
+++|++. ...+ ... .+++|.+... .+..++.+.+.++|.. .... ....+.+|+|+. +.+
T Consensus 276 ~~~~gl~~~~~~~~~rs~~vvsf~~~~~--------------~l~~~~~~~~~r~G~~-~~~~-~~~~g~vR~S~~-~~n 338 (355)
T cd00611 276 DNSNGFYRGPVDKRARSRMNVPFRLGKE--------------ELEKEFLKEAEAAGMI-GLKG-HRSVGGIRASIY-NAL 338 (355)
T ss_pred HhCccccccCCCHHHcCceEEEEEcCCh--------------hhhHHHHHHHHHCCCc-ccCC-CcccCeEEEEcc-CCC
Confidence 9998863 2111 133 4588886541 2234445567778984 3322 222368999995 677
Q ss_pred cHHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEKL 479 (486)
Q Consensus 464 t~~did~~i~~l~~~~ 479 (486)
|++|||+++++|+++.
T Consensus 339 t~edi~~l~~al~~~~ 354 (355)
T cd00611 339 SLEGVQALADFMKEFQ 354 (355)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8889999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=190.89 Aligned_cols=334 Identities=13% Similarity=0.065 Sum_probs=218.2
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|........+++.+.+++.+..|.... ....++|+|+++++..++.+...
T Consensus 47 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~i~~~~g~~~a~~~~~~~~~~-------- 113 (393)
T PRK05764 47 EHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYD-----PSQVIVTTGAKQALYNAFMALLD-------- 113 (393)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCC-----HHHEEEeCCcHHHHHHHHHHhcC--------
Confidence 34555555555443445655556788999999999888775321 12689999999998776665533
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
++..|+++..+|..+..+++.+|+ +++.+|+++++.+.+|+++|++++++.+ .+|+++.++|++|.+-
T Consensus 114 ---~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~NPtG~~~ 181 (393)
T PRK05764 114 ---PGDEVIIPAPYWVSYPEMVKLAGG---VPVFVPTGEENGFKLTVEQLEAAITPKT------KALILNSPSNPTGAVY 181 (393)
T ss_pred ---CCCEEEecCCCCcchHHHHHHcCC---EEEEEecCcccCCcCCHHHHHHhhCccc------eEEEEECCCCCCCccc
Confidence 566788899999999999999999 9999999865567899999999886432 3678888999999984
Q ss_pred ---CchHHHHHHHHhCceEEeeccccchhccCcc---chhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 248 ---PLGPLCDIAKRYSIWVHVDAAYAGSACICPE---FRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 248 ---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~---~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
++++|+++|++||+|+++|.+|+.+...... ......+...-+.+..++.|.++.| ..+|+++.. ++...+.
T Consensus 182 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~-~~~~~~~ 260 (393)
T PRK05764 182 SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGP-KELIKAM 260 (393)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecC-HHHHHHH
Confidence 5889999999999999999999754321111 1111112223456677889999855 347777643 4333322
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
......+ +-....+..+++.+.+. .+.+.+..++..++++++.+.|++++++++..
T Consensus 261 ~~~~~~~---------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~- 318 (393)
T PRK05764 261 SKLQSHS---------------------TSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPK- 318 (393)
T ss_pred HHHHhhc---------------------ccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-
Confidence 1111000 00123344455555442 45566677777888999999999988888764
Q ss_pred CCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 399 RNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 399 ~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
|..+.+ .+.+.+... .. .....++.+.+. +.|+.+.++..+...+++|+++.. ++++++++++.|.
T Consensus 319 ~~g~~~~~~~~~~~~~-------~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~---~~~~~~~~i~~l~ 386 (393)
T PRK05764 319 PEGAFYVFPNVSKLLG-------KS--ITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYAT---SLEDLEEGLERIE 386 (393)
T ss_pred CCcceEEEEecccccc-------cc--cCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecC---CHHHHHHHHHHHH
Confidence 444433 334432110 00 001235565554 457755444434336789999853 5789999999999
Q ss_pred HHHHH
Q 038818 477 EKLDG 481 (486)
Q Consensus 477 ~~~~~ 481 (486)
+++++
T Consensus 387 ~~~~~ 391 (393)
T PRK05764 387 RFLES 391 (393)
T ss_pred HHHHh
Confidence 88764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=189.59 Aligned_cols=317 Identities=14% Similarity=0.107 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 86 IAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
.|..+.+.+..+.+. |. ....+.+++.+++++++|.+ .+++|+|+|+|+..++.+....
T Consensus 25 ~~~~v~~a~~~~~~~----~~---~~~~~~~~~~~~~a~~~g~~---------~~~~~~g~t~al~~al~al~~~----- 83 (363)
T TIGR01437 25 VSDEVADAQKRGAQN----YF---EIKELVNKTGEYIANLLGVE---------DAVIVSSASAGIAQSVAAVITR----- 83 (363)
T ss_pred CCHHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHhhCCC---------eEEEEcCHHHHHHHHHHHHhcC-----
Confidence 455555555555432 11 13467778889999999975 4689999999999888876431
Q ss_pred ccc---------CCCCeEEEecCCCchH-----HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 166 GRE---------NISRLVVYGSDQTHSA-----LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 166 ~~~---------~~~~~~v~~s~~~H~s-----~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
|++ ..++..|+++. .|+. +..++...|+ +++.++.+ +.+|+++++++|.+.++
T Consensus 84 Gd~~~~~~~~~s~~~~~eVi~~~-~~~~~~~~~~~~~~~~~g~---~~v~v~~~----~~~d~~~le~ai~~~t~----- 150 (363)
T TIGR01437 84 GNRYLVENLHDSKIEVNEVVLPK-GHNVDYGAPVETMVRLGGG---KVVEAGYA----NECSAEQLEAAITEKTA----- 150 (363)
T ss_pred CCcchhhcccccccccceEEEEC-ccchhcCCchHHHHHhcCC---eEEEEcCC----CCCCHHHHHHhcChhce-----
Confidence 110 00223566665 5543 3466778898 88888763 37999999999987764
Q ss_pred EEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEe
Q 038818 232 LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWV 311 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~ 311 (486)
.+++++.+++++|.+.|+++|+++|++||+++|+|+||+... .... .+ ++|.+++++||++.+|. .|+++.
T Consensus 151 ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~------~~~~-~~-g~D~~~~S~~K~l~gp~-~G~l~~ 221 (363)
T TIGR01437 151 AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL------QKYY-RL-GADLVIYSGAKAIEGPT-SGLVLG 221 (363)
T ss_pred EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch------HHHH-Hc-CCCEEEEeCCcccCCCc-eEEEEE
Confidence 234466777889999999999999999999999999996211 1111 11 58999999999999987 777665
Q ss_pred eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC
Q 038818 312 KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN 391 (486)
Q Consensus 312 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~ 391 (486)
+ ++.+..... +..... . .++.+. ...+++..++..+-..+ .+.+++..+.++++.+.|+++|
T Consensus 222 ~-~~~i~~~~~----~~~~~~----~-------~~~~~~-~~~~gl~aAl~~~~~~~-~~~~~~~~~~~~~l~~~L~~i~ 283 (363)
T TIGR01437 222 K-KKYIEWVKL----QSKGIG----R-------AMKVGK-ENILGLTAALEQYLSTG-KESGAEMVAKLTPFIEALNTLK 283 (363)
T ss_pred c-HHHHHHHHh----ccCCCc----c-------eeccCH-HHHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHHHhcCC
Confidence 4 333332110 100000 0 001100 11244555555442222 2333444456778999999999
Q ss_pred CeEEecCCC-------eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCc
Q 038818 392 RFEIVAPRN-------FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTE 464 (486)
Q Consensus 392 ~~~~~~~~~-------~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt 464 (486)
++++..++. ...+.|...... ....++.+.|.+.+.-++........+.+|+.+. .++
T Consensus 284 g~~~~~~~~~~~~~~~~~~v~~~~~~~g-------------~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~--~~~ 348 (363)
T TIGR01437 284 GVSASIVQDEAGRDIARAEIRFDESELG-------------MTAADVVQALRQGEPAIYTRGYKANEGIIEIDPR--SVT 348 (363)
T ss_pred CeEEEEecCCCCCcCceEEEEEeccCCC-------------CCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee--cCC
Confidence 998874321 122334332111 1134566777666643333222334567888874 356
Q ss_pred HHHHHHHHHHHHHH
Q 038818 465 DRHVIAAWKVVQEK 478 (486)
Q Consensus 465 ~~did~~i~~l~~~ 478 (486)
++|+|.++++|+++
T Consensus 349 ~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 349 GGQLDIIVERIREI 362 (363)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999876
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=196.27 Aligned_cols=342 Identities=13% Similarity=0.079 Sum_probs=208.1
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc-C------CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF-N------VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC 147 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-n------~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt 147 (486)
+++.+.+++...+..+.+.+...+ . +....|...+....+|+.+.+++++++|.+.. . ++++|||
T Consensus 20 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~-------~-v~~~sgt 91 (402)
T cd00378 20 ETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYA-------N-VQPHSGS 91 (402)
T ss_pred hCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCce-------e-eecCCcH
Confidence 356666665444444555554332 1 11223334555677888788999999998753 2 4445678
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH-----HHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHH
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA-----AQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAI 221 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a-----~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l 221 (486)
+|+..++.+... +++.|+++..+|.+.... ++..|. ++..++++.+ +++.+|+++|++++
T Consensus 92 ~a~~~~l~~l~~-----------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~id~~~l~~~i 157 (402)
T cd00378 92 QANLAVYFALLE-----------PGDTIMGLDLSHGGHLTHGSFTKVSASGK---LFESVPYGVDPETGLIDYDALEKMA 157 (402)
T ss_pred HHHHHHHHHhcC-----------CCCEEEEecCccCccccccccccccccce---eEEEecCCcCcccCCcCHHHHHHHH
Confidence 998877766533 566788887777653222 555676 7777777543 25799999999998
Q ss_pred HHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC
Q 038818 222 DLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF 301 (486)
Q Consensus 222 ~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~ 301 (486)
.+.. +.+|+++.+. +|...|+++|+++|+++|+++++|++|..+.......... +..+|.++.++||++.
T Consensus 158 ~~~~-----~~~v~~~~~~--~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~---~~~~dv~~~s~sK~l~ 227 (402)
T cd00378 158 LEFK-----PKLIVAGASA--YPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNP---LPGADVVTTTTHKTLR 227 (402)
T ss_pred HhCC-----CCEEEecCcc--cCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCc---ccCCcEEEeccccCCC
Confidence 6421 3355555543 4677899999999999999999999975544322111111 1257889999999997
Q ss_pred CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHH
Q 038818 302 TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQ 381 (486)
Q Consensus 302 ~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~ 381 (486)
+|.+ |+++.+++....+......++... ........++..++......++.++.++..++++
T Consensus 228 G~~g-g~i~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 289 (402)
T cd00378 228 GPRG-GLILTRKGELAKKINSAVFPGLQG-----------------GPHLHVIAAKAVALKEALEPEFKAYAKQVVENAK 289 (402)
T ss_pred CCCc-eEEEeccHHHHHHHHHHhCccccC-----------------CchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7654 555565534433221111111110 0000111122223333322356778888999999
Q ss_pred HHHHHHhCCCCeEEec-CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEe---eeeE---CCEeEE
Q 038818 382 LFQELVGGDNRFEIVA-PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVS---HGMV---AGIYFI 454 (486)
Q Consensus 382 ~l~~~L~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~~---~~~~~l 454 (486)
++.+.|++. ++++.. +...+.+.+.+.+... + ..++.+.+.+.|+.+.. +... .+...+
T Consensus 290 ~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~~-----------~--~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~l 355 (402)
T cd00378 290 ALAEALKER-GFKVVSGGTDNHLVLVDLRPKGI-----------T--GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGI 355 (402)
T ss_pred HHHHHHHhC-CCeEeecCCCCeEEEEeCCccCC-----------C--HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCee
Confidence 999999987 888764 3345666666653210 0 12445556667875321 1111 134689
Q ss_pred EEEecCC---CCcHHHHHHHHHHHHHHHH
Q 038818 455 RFAVGAT---LTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 455 R~~~~~~---~tt~~did~~i~~l~~~~~ 480 (486)
|++++.. ..+++||+.+++.|+++++
T Consensus 356 Ri~~~~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 356 RIGTPAMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred EecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 9988432 2368899999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-20 Score=187.17 Aligned_cols=313 Identities=11% Similarity=0.064 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+.+++++|.++ ..++++|++ ++..++.+... ++++|++....|+++..++++
T Consensus 153 ~~~~~~Lee~La~~~~~~~--------~i~~s~G~~-a~~sai~a~~~-----------~gd~Ii~d~~~H~s~~~~~~l 212 (481)
T PLN02822 153 IDVHLDCETKIAKFLGTPD--------SILYSYGLS-TIFSVIPAFCK-----------KGDIIVADEGVHWGIQNGLYL 212 (481)
T ss_pred HHHHHHHHHHHHHHhCCCC--------EEEECCHHH-HHHHHHHHhCC-----------CCCEEEEeCCccHHHHHHHHH
Confidence 4556667778888888654 356666554 66555554322 677888899999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC---Ccc-EEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG---LIP-LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g---~~p-~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
.|. +++.++.+ |+++|+..+++..+.. ..+ .+|++....+++|.+.|+++|+++|++||+++++|+
T Consensus 213 s~~---~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDE 282 (481)
T PLN02822 213 SRS---TIVYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDE 282 (481)
T ss_pred cCC---eEEEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEEC
Confidence 988 88888764 5677777776543221 122 578888888999999999999999999999999999
Q ss_pred cccchhccCccchhh--hcCC--CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 268 AYAGSACICPEFRHF--IDGI--EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 268 a~g~~~~~~~~~~~~--~~~~--~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
+|+.+.+ ....+.. ..++ ...|.++.+..|.++.+ .|+++. ++............|++..
T Consensus 283 a~s~gvl-G~~G~G~~e~~~v~~~~~dii~~s~sKalg~~--GG~i~g-~~~ii~~~~~~~~~~~fsa------------ 346 (481)
T PLN02822 283 SNSFGVL-GKSGRGLSEHFGVPIEKIDIITAAMGHALATE--GGFCTG-SARVVDHQRLSSSGYVFSA------------ 346 (481)
T ss_pred Ccccccc-CCCCCChHHHcCCCCCCCeEEEecchhhhhhC--CeEEEc-CHHHHHHHHhcCCceeecc------------
Confidence 9974432 2112111 1123 36789999999999743 255554 4434332211222222211
Q ss_pred ccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCcc
Q 038818 344 WQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 344 ~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
+.+. .+.++..++..+ +...++.++..+++++|++.|++.+++++..++.++++.+.+...... ..
T Consensus 347 -----~lPp~~~~Aa~~aL~~l--~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~------~~ 413 (481)
T PLN02822 347 -----SLPPYLASAAITAIDVL--EDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGS------AK 413 (481)
T ss_pred -----ccCHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCccc------cc
Confidence 1010 111222233332 223567888999999999999988788887666777887877532100 00
Q ss_pred chHHHHHHHHHHHH-hcCcEEEee--eeEC---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 423 GANELNRKLLESIN-ASGQLYVSH--GMVA---GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 423 ~~~~~~~~l~~~l~-~~g~~~~~~--~~~~---~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
......+++.++|. ++|+++... ..+. ....+|++++ ...|++||+++++.|++++..+++
T Consensus 414 ~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is-~~~t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 414 EDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVS-AGHTESDILKASESLKRVAASVLK 480 (481)
T ss_pred chHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEEC-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 11234467788887 678754322 1111 2347999984 566888999999999999988764
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=187.47 Aligned_cols=337 Identities=12% Similarity=0.065 Sum_probs=203.5
Q ss_pred cCCCCCCcceecCCCCCHHHHHHHHHHhhcCCC--ccccccChh----hHHHHHHHHHHHHHHcCCCCCCccCCCcceEE
Q 038818 69 THWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVV--GFNWMSSPA----ATELENIVMDWLGEMLKLPKSFLFSGTGGGVI 142 (486)
Q Consensus 69 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~--~~~~~~~~~----~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~ 142 (486)
..+.+-.|+|+-..++..++ +.+.+..+..+. ......+.. ...+-.++++.+++++|.+. .++
T Consensus 7 ~~~~s~~YL~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~---------~l~ 76 (370)
T PRK05937 7 IDFVTNDFLGFSRSDTLVHE-VEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE---------AFI 76 (370)
T ss_pred EEeECCCccCCCCCHHHHHH-HHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe---------EEE
Confidence 45667789999765444443 444554443211 111122222 45666778899999999853 355
Q ss_pred cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHH
Q 038818 143 QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAID 222 (486)
Q Consensus 143 t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~ 222 (486)
.++|+.+|+. +..+... ++.+|+.+...|.|+..+++.+.. ..+.++ ..|+++|+++|+
T Consensus 77 ~~sG~~a~~~-~~~~~~~----------~~d~ii~d~~~H~sv~~~~~~~~~---~~~~~~-------~~d~~~l~~~l~ 135 (370)
T PRK05937 77 VPSGYMANLG-LCAHLSS----------VTDYVLWDEQVHISVVYSLSVISG---WHQSFR-------HNDLDHLESLLE 135 (370)
T ss_pred ECChHHHHHH-HHHHhCC----------CCCEEEEEhhhhHHHHHHHHHcCC---ceEEec-------CCCHHHHHHHHH
Confidence 6666778853 2222111 456788889999999999887642 333332 568999999998
Q ss_pred HHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhh--cCCCCCCceeecccccc
Q 038818 223 LDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFI--DGIEGADSFSLNAHKWF 300 (486)
Q Consensus 223 ~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~--~~~~~aDsi~~~~hK~l 300 (486)
+..+.+....+|+++++++++|.+.|+++|+++|+++|+++|||+||+.+.+..+ .+... .+....+.+..+++|.+
T Consensus 136 ~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~-g~g~~~~~~~~~~~~~~~tlsK~~ 214 (370)
T PRK05937 136 SCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDD-GKGFCHSLGYENFYAVLVTYSKAL 214 (370)
T ss_pred hhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCC-CCchHHhhCCCCCcEEEEechhhh
Confidence 6543222345677889999999999999999999999999999999986544322 11110 12223345567788987
Q ss_pred CCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHH
Q 038818 301 FTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMA 380 (486)
Q Consensus 301 ~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a 380 (486)
+ |.|+++++.++ ..........+|.+... .......++..++..+-.++ ....++..+++
T Consensus 215 g-~~G~~vl~~~~--~~~~~~~~~~~~~~s~~----------------~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~ 274 (370)
T PRK05937 215 G-SMGAALLSSSE--VKQDLMLNSPPLRYSTG----------------LPPHLLISIQVAYDFLSQEG-ELARKQLFRLK 274 (370)
T ss_pred h-cCceEEEcCHH--HHHHHHHhCCCCeecCC----------------CCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHH
Confidence 5 56777665433 11111111222322110 00112233344555443333 34567788888
Q ss_pred HHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecC
Q 038818 381 QLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGA 460 (486)
Q Consensus 381 ~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~ 460 (486)
+++.+.|.... + ...+.+.+... ....+.+.|.++|+. +........+++|+++ +
T Consensus 275 ~~l~~~l~~~~-------~-~~~~~i~~~~~---------------~~~~~~~~L~~~gi~-v~~~~~~~~~~iRis~-~ 329 (370)
T PRK05937 275 EYFAQKFSSAA-------P-GCVQPIFLPGI---------------SEQELYSKLVETGIR-VGVVCFPTGPFLRVNL-H 329 (370)
T ss_pred HHHHHhcCCCC-------C-CCEEEEEeCCh---------------hHHHHHHHHHHCCee-EEeeCCCCCCEEEEEc-C
Confidence 88888876431 0 01222333321 124567777777873 4432222345799998 5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l 482 (486)
..+|++|||++++.|+++.+++
T Consensus 330 ~~~t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 330 AFNTEDEVDILVSVLATYLEKY 351 (370)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 7888889999999999988664
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=166.30 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=219.9
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCC
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPK 197 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~ 197 (486)
..+.+++.+|++. .-+|.|+-+|-+..|.+.+. +++.|++...+||+-.-+|...|+
T Consensus 66 F~~dlaeFlg~D~---------~R~t~GARe~KfavMhal~~-----------~gd~vV~D~~aHYttyvAAEragl--- 122 (382)
T COG1103 66 FLEDLAEFLGMDE---------VRVTAGAREAKFAVMHALCK-----------EGDWVVVDSLAHYTTYVAAERAGL--- 122 (382)
T ss_pred HHHHHHHHhCCce---------eeecccchhhHHHHHHHhcc-----------CCCEEEEcCcchHHHHHHHHhcCC---
Confidence 3445899999974 57899999999877776654 677788899999999999999999
Q ss_pred CeEEEecCCCCCcccCHHHHHHHHHHHHHCC-CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 198 NFRAIKTTKSSSFTLTPESLQAAIDLDIQAG-LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 198 ~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g-~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+|..||......+.++++...+.|++..+++ ..|.+.++|++....|.+.|.++++++|++||+++.+.+||..+-++.
T Consensus 123 ~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpv 202 (382)
T COG1103 123 NVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPV 202 (382)
T ss_pred eEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccc
Confidence 9999996554578999999999999988775 678899999999999999999999999999999999999998776654
Q ss_pred ccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchH
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK 356 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~ 356 (486)
.. +. -++|+|+.|+||.+.+..+||++.++.+.. ...+.....+.....- -.+.|+.+. ++
T Consensus 203 s~-ke-----~g~DFiVgSGHKsmAAs~PiGvl~~~eE~a-e~V~r~Sg~~~~~KEv----------ellGCT~rG--ap 263 (382)
T COG1103 203 SG-KE-----IGADFIVGSGHKSMAASAPIGVLAMSEEWA-EIVLRRSGRAFPKKEV----------ELLGCTVRG--AP 263 (382)
T ss_pred cc-cc-----cCCCEEEecCccchhccCCeeEEeehhHHH-HHHHhhccccccccee----------eeecccccC--ch
Confidence 32 22 289999999999999999999999987632 2233333222111110 134565433 33
Q ss_pred HHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-C-CeeEEEEEeecCCCCCCCCCCccchHHHHH---
Q 038818 357 LWLVLRSFG--VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-R-NFAVVCFRVLPSASGLGDGKANEGANELNR--- 429 (486)
Q Consensus 357 ~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~--- 429 (486)
+...++.+- .+.. ...+...+.+++|.+.|+++.|++.++. | +.-.+-|..+.. +++.+
T Consensus 264 ivTlmASfP~V~eRV-krWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f-------------~eIakk~~ 329 (382)
T COG1103 264 IVTLMASFPHVVERV-KRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVF-------------HEIAKKHK 329 (382)
T ss_pred HHHHHhcCHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchH-------------HHHHHhCc
Confidence 333333321 2333 3456677899999999999988887763 2 333444433221 22222
Q ss_pred ----HHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 430 ----KLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 430 ----~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.|++.|.++|+..+.++ -..++++|+ +..+.|+++.+++++++++++
T Consensus 330 r~gyFlY~ELK~RgI~GI~~G---~Tk~~K~sv--yGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 330 RKGYFLYEELKKRGIHGIQPG---QTKYFKLSV--YGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred CCceeeHHHHHhcCccccccC---ceeEEEEEe--ecCCHHHHHHHHHHHHHHHHh
Confidence 35566777776544442 245788887 678889999999999999875
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=189.51 Aligned_cols=308 Identities=11% Similarity=0.066 Sum_probs=195.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH-HH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-LQ 186 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~ 186 (486)
.|...++|+.+.+.+++++|.+. ..+++++|+.||+.++.+... +++.|+++...|.+ +.
T Consensus 69 ~~~~~~lE~~~~~~la~l~g~~~--------alv~~~SG~~A~~~~l~al~~-----------~GD~Vl~~~~~~~~~~~ 129 (416)
T PRK13034 69 CEFVDEVEALAIERAKQLFGCDY--------ANVQPHSGSQANGAVYLALLK-----------PGDTILGMSLSHGGHLT 129 (416)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCc--------eEEecCCcHHHHHHHHHHhcC-----------CCCEEEEcCccceeeee
Confidence 46677888877789999999864 235578999999888776533 78889999999987 33
Q ss_pred HHHHHcCCCCCCe--EEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 187 KAAQIAGIDPKNF--RAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 187 ~a~~~~G~g~~~v--~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
.+++....+. .+ +.++++.. ++.+|+++|++.++.. .|.+|+.+. +.+|...|+++|.++|++||++++
T Consensus 130 ~g~~~~~~~~-~~~~~~~~~~~~-~~~~d~~~le~~l~~~-----~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~li 200 (416)
T PRK13034 130 HGAKVSLSGK-WYNAVQYGVDRL-TGLIDYDEVEELAKEH-----KPKLIIAGF--SAYPRELDFARFREIADEVGALLM 200 (416)
T ss_pred cCCcceeccc-eeeeEEcccccc-cCCcCHHHHHHHHhhc-----CCeEEEECC--CccccccCHHHHHHHHHHcCCEEE
Confidence 3333211110 22 34555432 4579999999988642 144555433 346888899999999999999999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
||+||+.+....+... ..+..+|.+++++||++.+|.| |+++.+++........ +++..
T Consensus 201 vD~Aha~G~~~~g~~~---~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~----~~~~~------------- 259 (416)
T PRK13034 201 VDMAHIAGLVAAGEHP---NPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINS----AVFPG------------- 259 (416)
T ss_pred EeCcccccCcccCCCC---CCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHh----hcCCc-------------
Confidence 9999987765443211 1234699999999999988875 5555655543221111 11110
Q ss_pred cccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCCcc
Q 038818 345 QITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 345 ~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
++.+..+ ...++..++...-..+..++.++..+++++|++.|.+. |+++..+ .+++++.+.+....
T Consensus 260 -~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~---------- 327 (416)
T PRK13034 260 -LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKG---------- 327 (416)
T ss_pred -ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCC----------
Confidence 0111111 11122222222211234466789999999999999988 8998743 46677777665431
Q ss_pred chHHHHHHHHHHHHhcCcEEEeee------eECCEeEEEEEecCC----CCcHHHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQLYVSHG------MVAGIYFIRFAVGAT----LTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~------~~~~~~~lR~~~~~~----~tt~~did~~i~~l~~~~~ 480 (486)
.....+.+.|.+.|+.+..-. .......+|+++. . ..+++||++++++|.+++.
T Consensus 328 ---~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~-~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 328 ---LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTP-AGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred ---CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcH-HHHhCCCCHHHHHHHHHHHHHHHh
Confidence 112344456667787432200 0011456999973 4 5568899999999998765
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=174.72 Aligned_cols=333 Identities=14% Similarity=0.087 Sum_probs=231.5
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
|..+.+.+..........|. -...++-+.+.+|.++..++.... .+.++++| .+.++..+.+.+.+
T Consensus 40 pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~-----e~i~~~p~----VVpgi~~~I~~~T~--- 105 (388)
T COG1168 40 PPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKP-----EWIVFVPG----VVPGISLAIRALTK--- 105 (388)
T ss_pred CHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCc-----ceEEEcCc----chHhHHHHHHHhCc---
Confidence 44567777777777666776 334568889999999999986531 25677766 45566666555433
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++-|++..+.++.+.++....|. +++..|.-. ++.+.||.++||+++.+.. +.+.+.+.|+||+|.
T Consensus 106 ----~gd~Vvi~tPvY~PF~~~i~~n~R---~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP~Gr 173 (388)
T COG1168 106 ----PGDGVVIQTPVYPPFYNAIKLNGR---KVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGR 173 (388)
T ss_pred ----CCCeeEecCCCchHHHHHHhhcCc---EEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCCCCc
Confidence 566677787899999999999999 999999863 4568899999999998753 347899999999998
Q ss_pred c---CCchHHHHHHHHhCceEEeeccccchhccCccchhhhc-CCCCCC-cee-eccccccCCC-CcceEEEeeCchHHH
Q 038818 246 V---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID-GIEGAD-SFS-LNAHKWFFTT-LDCCCLWVKNPNALI 318 (486)
Q Consensus 246 i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~-~~~~aD-si~-~~~hK~l~~p-~~~g~~~~~~~~~~~ 318 (486)
+ +.|.+|++||++||+.++.|..|+-..+....+-.... ....+| +++ .++.|.|+.+ ..|+.+++.+++...
T Consensus 174 vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~ 253 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRA 253 (388)
T ss_pred cccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHH
Confidence 8 78999999999999999999999765543322211110 111233 454 4569999944 578999998886533
Q ss_pred HHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEE
Q 038818 319 KALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS--FGVANLRNFLRSHVRMAQLFQELVGG-DNRFEI 395 (486)
Q Consensus 319 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~--~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~ 395 (486)
+..+.. ..... -..+++++-+...+ .|.+++.++++....+.+++.+.|++ +|++++
T Consensus 254 ~~~~~l-~~~~~-------------------~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v 313 (388)
T COG1168 254 KFLKRL-KRNGL-------------------HGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKV 313 (388)
T ss_pred HHHHHH-HHhcC-------------------CCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 222111 01110 01244554444444 48999999999999999999999976 689999
Q ss_pred ecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHH
Q 038818 396 VAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV---AGIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 396 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~~~tt~~did~~i 472 (486)
..+..+......+.+-.. ...++.+.|.++..+.++++.. .|.+++|+.+ .+.++-+++.+
T Consensus 314 ~~p~gTYL~WLD~r~l~l-------------~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~---acpr~~L~eal 377 (388)
T COG1168 314 TEPQGTYLAWLDCRELGL-------------DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNF---ACPRAILEEAL 377 (388)
T ss_pred ecCCCceeeeeeccccCC-------------ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEec---CCCHHHHHHHH
Confidence 866666666555554321 1135666666667766665543 3578999876 55666778888
Q ss_pred HHHHHHHHH
Q 038818 473 KVVQEKLDG 481 (486)
Q Consensus 473 ~~l~~~~~~ 481 (486)
+.|...++.
T Consensus 378 ~ri~~al~~ 386 (388)
T COG1168 378 ERLKRALKK 386 (388)
T ss_pred HHHHHHHhc
Confidence 887776654
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-20 Score=184.75 Aligned_cols=304 Identities=12% Similarity=0.062 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 110 AATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 110 ~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
+...+..++.+++++++|.+. ..++|+ |++++..++.+... +++.|++++.+|+++..++
T Consensus 84 G~~~l~~~l~~~la~~~g~~~--------~i~~ts-G~~a~~~~~~~l~~-----------~gd~vi~~~~~~~~~~~~~ 143 (397)
T PRK06939 84 GTQDLHKELEEKLAKFLGTED--------AILYSS-CFDANGGLFETLLG-----------KEDAIISDALNHASIIDGV 143 (397)
T ss_pred CCcHHHHHHHHHHHHHhCCCc--------EEEEcC-hHHHHHHHHHHhCC-----------CCCEEEEEhhhhHHHHHHH
Confidence 345677888899999999652 345555 48888766554322 6778889999999999999
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
...|. +++.++. +|+++|++++++....+..+.+|+.....+++|.+.|+++|.++|++||+|+++|++|
T Consensus 144 ~~~~~---~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~ 213 (397)
T PRK06939 144 RLCKA---KRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSH 213 (397)
T ss_pred HhcCC---ceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 99988 7777653 4899999998764332234566776667888999999999999999999999999999
Q ss_pred cchhccCc-cchhhhcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc
Q 038818 270 AGSACICP-EFRHFIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 270 g~~~~~~~-~~~~~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
+.++.... .......++ ...|.++.++||+++++ .+|+++.++ ...........++.. .
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~-r~G~v~~~~-~~~~~l~~~~~~~~~-----------------~ 274 (397)
T PRK06939 214 AVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA-SGGYTAGRK-EVIDWLRQRSRPYLF-----------------S 274 (397)
T ss_pred cccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc-CceEEEeCH-HHHHHHHHhCccccc-----------------c
Confidence 63332111 101111122 35788999999999655 457776653 333322111111111 1
Q ss_pred CCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 348 LSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 348 ~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
++... ...++..+++.+. ...++.++..++++++.+.|+++ ++++. ++..+++.+.+.+ ..
T Consensus 275 ~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~--------------~~ 336 (397)
T PRK06939 275 NSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAA-GFTLG-PGEHPIIPVMLGD--------------AK 336 (397)
T ss_pred CCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEECC--------------HH
Confidence 11010 1122233344331 22466778888999999999887 66654 3444454444321 12
Q ss_pred HHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...++.+.|.++|+.+. +..+ .+..++|+++. ...++++|+++++.|+++++++
T Consensus 337 ~~~~~~~~L~~~gI~v~-~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 337 LAQEFADRLLEEGVYVI-GFSFPVVPKGQARIRTQMS-AAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred HHHHHHHHHHHCCceEe-eeCCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 24567778888887544 3222 23468999984 4467889999999999988764
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=187.63 Aligned_cols=307 Identities=16% Similarity=0.143 Sum_probs=196.0
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
..++...++| +.+++++|.+ ..+++++||+|+..++.+.+.. ++..|+++..+|.+.
T Consensus 15 ~~~~~~~~~~----~~la~~~~~~---------~~~~~~sgt~al~~~l~~l~~~----------~gd~vl~~~~~~~~~ 71 (352)
T cd00616 15 TLGPKVREFE----KAFAEYLGVK---------YAVAVSSGTAALHLALRALGIG----------PGDEVIVPSFTFVAT 71 (352)
T ss_pred cCCHHHHHHH----HHHHHHhCCC---------eEEEECCHHHHHHHHHHHcCCC----------CCCEEEeCCcchHHH
Confidence 3345445555 4577777753 4688899999998887765311 567889999999999
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
..++...|+ +++.+++++ .++.+|+++|+++++++ +.+|+++ +++|.+.|+++|.++|+++|+++++
T Consensus 72 ~~~~~~~g~---~~~~~~~~~-~~~~~d~~~l~~~i~~~------~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~ 138 (352)
T cd00616 72 ANAILLLGA---TPVFVDIDP-DTYNIDPELIEAAITPR------TKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIE 138 (352)
T ss_pred HHHHHHcCC---eEEEEecCC-CcCCcCHHHHHHhcCcC------CeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEE
Confidence 999999999 999999975 35799999999988543 2355555 3589999999999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeec--cccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCC
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLN--AHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~--~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~ 342 (486)
|++|+.+...... . +. ...|..+++ .|||+.++ ..|++++++++...+.... ...+.... ..+.
T Consensus 139 D~a~~~g~~~~~~--~-~~--~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 205 (352)
T cd00616 139 DAAQALGATYKGR--K-VG--TFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDR-------FKYE 205 (352)
T ss_pred ECCCCCCCeECCE--E-cc--cCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCC-------Cccc
Confidence 9999755433211 0 11 124555555 56999544 3566777765544322110 00000000 0000
Q ss_pred CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----CeeEEEEEeecCCCCCCC
Q 038818 343 DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----NFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~ 417 (486)
.......-+...+.....+. ..+++.++.++..++++++++.|+++++++++.++ ...+++|.+.+..
T Consensus 206 ~~~~~~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----- 278 (352)
T cd00616 206 HEILGYNYRLSEIQAAIGLA--QLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA----- 278 (352)
T ss_pred cceeeeccCcCHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC-----
Confidence 00111111222333333332 34667888889999999999999999999987543 2356777765310
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEE---eeeeEC--------------------CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYV---SHGMVA--------------------GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~~~--------------------~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
.....++.+.|.++|+... .+.... ....+|+++ ++.+|++||++++++
T Consensus 279 -------~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~-~~~~t~~di~~i~~~ 350 (352)
T cd00616 279 -------GESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPL-HPSLTEEEIDRVIEA 350 (352)
T ss_pred -------CCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccC-CCCCCHHHHHHHHHH
Confidence 0113356666666776311 111000 025799998 678899999999998
Q ss_pred HH
Q 038818 475 VQ 476 (486)
Q Consensus 475 l~ 476 (486)
|+
T Consensus 351 l~ 352 (352)
T cd00616 351 LR 352 (352)
T ss_pred hC
Confidence 74
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=190.59 Aligned_cols=336 Identities=14% Similarity=0.033 Sum_probs=212.6
Q ss_pred ecCCCCCHHHHHHHHHHhhc----CCCcccc---ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEc-CCchHHH
Q 038818 79 YFPSSGSIAGFLGEMLSSGF----NVVGFNW---MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQ-GTTCEAI 150 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~----n~~~~~~---~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t-~ggt~a~ 150 (486)
+.|++...|..+.+.+...+ +.....+ ..++.+.++-+++++.+++++|.++++ ..+++ ++||.++
T Consensus 7 ~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~------~v~~~~gsgt~~~ 80 (360)
T PRK05355 7 FSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNY------KVLFLQGGASLQF 80 (360)
T ss_pred ccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc------EEEEEcCCchHHH
Confidence 55677666666655555443 1222222 234556688899999999999985442 45555 5555545
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHH-HHHHHHHCCC
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQA-AIDLDIQAGL 229 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~-~l~~~~~~g~ 229 (486)
-.++...... +.+..+|..+...|.+ .+.++.+|. . ..++.++ +.+..+..++++ +|+++
T Consensus 81 Ea~~~nl~~~--------g~~~l~i~~G~fg~r~-~~~a~~~g~---~-~~~~~~~-~~g~~~~~~~~~~~l~~~----- 141 (360)
T PRK05355 81 AMVPMNLLGG--------GKKADYVDTGSWSKKA-IKEAKKYGE---V-NVAASSE-DDGFTYIPPLDEWQLSDD----- 141 (360)
T ss_pred HHHHHhcCCC--------CCeEEEEECCHHHHHH-HHHHHHhCC---c-eEEeccc-ccCCCCCCChhhccCCCC-----
Confidence 4444433221 1133445445445544 667777886 5 5555543 133555555555 55442
Q ss_pred ccEEEEeecCCccccccC-CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceE
Q 038818 230 IPLFLCATVGTTAITTVD-PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~id-pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~ 308 (486)
+.+|.+++..|.||.+. ||++| +|+.++||++++.+....+- ...|.+++++||+++ |.|.|+
T Consensus 142 -~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv--------~~~d~~~~ssqK~lg-P~Glg~ 205 (360)
T PRK05355 142 -AAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDV--------SKFGLIYAGAQKNIG-PAGLTI 205 (360)
T ss_pred -CCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCH--------HHccEEEEecccccc-CCceEE
Confidence 45899999999999997 78777 89999999999877665432 245799999999986 999999
Q ss_pred EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHH
Q 038818 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~ 386 (486)
++++++.+- +.-...+.|+..... .... ....+-. ....++..+++.+-.+ |++++.++..++++++++.
T Consensus 206 l~~s~~~l~-~~~~~~~~~~~~~~~---~~~~----~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~ 277 (360)
T PRK05355 206 VIVREDLLG-RALPSIPSMLDYKTH---ADND----SMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDA 277 (360)
T ss_pred EEECHHHHh-hcccCCChHHHHHHH---HhcC----CccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 999987542 211111222211100 0000 0011111 1235667778877777 8999999999999999999
Q ss_pred HhCCCCeEEecC--CCe-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCC
Q 038818 387 VGGDNRFEIVAP--RNF-AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLT 463 (486)
Q Consensus 387 L~~~~~~~~~~~--~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~t 463 (486)
|++++.+..+.+ ..+ .+++|.+... ....++.+.+.++|+.+ .... ...+.+|+|++ +.+
T Consensus 278 l~~~~~~~~~~~~~~rs~~v~sf~~~~~--------------~~~~~~~~~~~~~Gi~~-~~~~-~~~g~vRiS~~-~~n 340 (360)
T PRK05355 278 IDSSDFYRNPVAPEDRSRMNVPFTLADE--------------ELDKKFLAEAKAAGLVG-LKGH-RSVGGMRASIY-NAM 340 (360)
T ss_pred HHhCCCcccCCChhhcCCcEEEEEcCCh--------------HHHHHHHHHHHHCCCcc-cCCC-CccCcEEEECC-CCC
Confidence 999863333222 234 4688886531 22345667777889864 3222 22468999995 577
Q ss_pred cHHHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 464 t~~did~~i~~l~~~~~ 480 (486)
|++|||+++++|++++.
T Consensus 341 t~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 341 PLEGVQALVDFMKEFER 357 (360)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88899999999999764
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=190.68 Aligned_cols=324 Identities=10% Similarity=0.061 Sum_probs=201.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC------
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD------ 179 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~------ 179 (486)
......++|..+.+...++|+.....+ ...+ +.+|+.||+.++.+... +++.|++.+
T Consensus 74 G~~~~d~lE~~~~~~~~~~f~~~~~~~-----~~nv~~~SG~~AN~av~~aL~~-----------pgD~Il~~d~~~gGh 137 (475)
T PLN03226 74 GNEYIDQIETLCQKRALEAFRLDPEKW-----GVNVQPLSGSPANFAVYTALLQ-----------PHDRIMGLDLPHGGH 137 (475)
T ss_pred CChhHHHHHHHHHHHHHHHhCCCccee-----EEecCcCchHHHHHHHHHHhCC-----------CCCEEEECCCCcCcc
Confidence 334567899988899999999876420 0111 37889999877776644 667777633
Q ss_pred CCchHHHHHHHHcCCCCC-CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH
Q 038818 180 QTHSALQKAAQIAGIDPK-NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR 258 (486)
Q Consensus 180 ~~H~s~~~a~~~~G~g~~-~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~ 258 (486)
..|.+...+++..+.+.. +++.+++++ +++.+|+++|++++.+. .|.+|++ +.+.+|..-|+++|+++|++
T Consensus 138 l~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~-----~pklIv~--~~S~~s~~~D~a~i~~ia~~ 209 (475)
T PLN03226 138 LSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLF-----RPKLIIA--GASAYPRDWDYARMRKIADK 209 (475)
T ss_pred hhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhc-----CCeEEEE--ecCcCCCccCHHHHHHHHHH
Confidence 334443333333333100 111344554 35799999999998753 2444544 34557888999999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCc---ccccCccCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNP---EFLRNKASDS 335 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~---~y~~~~~~~~ 335 (486)
+|++++||+||+.+.+..+..... ++.+|+++.++||||.+|.| |+++++++.. ........ .|..
T Consensus 210 ~ga~LlvD~AH~~Gli~~~~~~~p---~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~-~~~~~g~~~~~d~~~------ 278 (475)
T PLN03226 210 VGALLMCDMAHISGLVAAQEAASP---FEYCDVVTTTTHKSLRGPRG-GMIFFRKGPK-PPKGQGEGAVYDYED------ 278 (475)
T ss_pred cCCEEEEEchhhhCcccCCCCCCC---CCCCeEEEecCcccccCCCc-eEEEEchhhc-ccccCCCccHHHHHH------
Confidence 999999999998877655432211 24799999999999999998 7777765421 10000000 0100
Q ss_pred CCccCC-CCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCC
Q 038818 336 KQVVDY-KDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSA 412 (486)
Q Consensus 336 ~~~~~~-~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~ 412 (486)
..+. ..+.++++-. ....++..+++.+-..+++++.++..+++++|++.|.+. |++++.+ .+.+++.+.+.+..
T Consensus 279 --~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~~l~~~~t~~hi~lv~~~~~g 355 (475)
T PLN03226 279 --KINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-GYKLVTGGTDNHLVLWDLRPLG 355 (475)
T ss_pred --HhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCCCCEEEEEccCCC
Confidence 0000 0011222211 123455666776656677888999999999999999985 9999864 23566666664432
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-----ECCEeEEEEEe---cCCCCcHHHHHHHHHHHHHHHHH
Q 038818 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHGM-----VAGIYFIRFAV---GATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-----~~~~~~lR~~~---~~~~tt~~did~~i~~l~~~~~~ 481 (486)
. ...++.+.|.+.|+..-.... ......+|+.. ++...+++|++++.+.|.++++.
T Consensus 356 i-------------~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 356 L-------------TGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred C-------------CHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 1 122344555566764321110 01234578732 45677889999999999998873
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=186.64 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
-+++.+.+++++|.+.. .++++|+|+++..++.+... +++.|+++..+|.|+..++...|+
T Consensus 61 i~~~~~~~A~~~ga~~~--------~~~~~Gst~a~~~~l~al~~-----------~gd~Vlv~~~~h~s~~~~~~~~g~ 121 (294)
T cd00615 61 IKEAQELAARAFGAKHT--------FFLVNGTSSSNKAVILAVCG-----------PGDKILIDRNCHKSVINGLVLSGA 121 (294)
T ss_pred HHHHHHHHHHHhCCCCE--------EEEcCcHHHHHHHHHHHcCC-----------CCCEEEEeCCchHHHHHHHHHCCC
Confidence 34566788999997642 35588989999877766543 677899999999999999999998
Q ss_pred CCCCeEEEecCCCCC----cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 195 DPKNFRAIKTTKSSS----FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 195 g~~~v~~v~~d~~~~----~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
+++.++.+.+++ +.+|++++++++++.. .+.+|+++.+ |++|.+.|+++|+++|+++|++++||+||+
T Consensus 122 ---~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~----~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~ 193 (294)
T cd00615 122 ---VPVYLKPERNPYYGIAGGIPPETFKKALIEHP----DAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHG 193 (294)
T ss_pred ---EEEEecCccCcccCcCCCCCHHHHHHHHHhCC----CceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcch
Confidence 899988764332 4799999999997532 2456777776 679999999999999999999999999998
Q ss_pred chhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 271 GSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
+.+.+.+..+.... ..++|.++.++||+++++.++|+++++++......+.... +.... .+.
T Consensus 194 ~~~~~~~~~~~~~~-~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~-~~~~t----------------tsp 255 (294)
T cd00615 194 AHFRFHPILPSSAA-MAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEAL-NLHQS----------------TSP 255 (294)
T ss_pred hhhccCcccCcchh-hcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHH-HHHCC----------------CCc
Confidence 76544433222111 1379999999999998888888888876521111111000 01100 010
Q ss_pred CC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 351 RF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 351 ~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
.. ...++-.+++.+..+| .+.+++..+++++++++|++
T Consensus 256 s~~~~asl~~a~~~~~~~g-~~~~~~~~~~~~~~r~~l~~ 294 (294)
T cd00615 256 SYLILASLDVARAMMALEG-KELVEELIELALYARQEINK 294 (294)
T ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhC
Confidence 11 1122333344343344 44678888899999988753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-20 Score=185.60 Aligned_cols=340 Identities=14% Similarity=0.104 Sum_probs=207.5
Q ss_pred CCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 70 HWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 70 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
.+.+-.|+|.-.. +.....+.+.+..+.......... ........++.+.+++++|.+ ..+++++|++|
T Consensus 49 ~~~sn~ylgl~~~-p~v~~a~~~~~~~~~~~~~~s~~~-~g~~~~~~~Le~~la~~~g~~---------~~l~~~sG~~a 117 (402)
T TIGR01821 49 VWCSNDYLGMGQH-PEVLQAMHETLDKYGAGAGGTRNI-SGTNIPHVELEAELADLHGKE---------SALVFTSGYVA 117 (402)
T ss_pred EeEccCcCCCCCC-HHHHHHHHHHHHHcCCCCcchhhh-hCCcHHHHHHHHHHHHHhCCC---------eEEEECchHHH
Confidence 3556678887543 223333334443321111111000 011333445667788888853 35777888999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
|..++.+++... ++.+|+++...|.++..++...|. .+..++. .|+++|++.++... ..
T Consensus 118 n~~ai~~l~~~~---------~~~~v~~~~~~h~s~~~~~~~~g~---~~~~~~~-------~d~~~l~~~l~~~~--~~ 176 (402)
T TIGR01821 118 NDATLATLAKII---------PGCVIFSDELNHASMIEGIRHSGA---EKFIFRH-------NDVAHLEKLLQSVD--PN 176 (402)
T ss_pred HHHHHHHhhCCC---------CCCEEEEcchHhHHHHHHHHHcCC---eEEEECC-------CCHHHHHHHHHhcc--CC
Confidence 998887765320 456777777789999888888887 6666543 37888998886431 11
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCC-CCCCceeeccccccCCCCcc
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGI-EGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~-~~aDsi~~~~hK~l~~p~~~ 306 (486)
.+.+|+++.+.+++|.+.|+++|+++|++||++++||+||+.+.+ .+..... ..++ ...|.+..++.|.++.+.
T Consensus 177 ~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-- 253 (402)
T TIGR01821 177 RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-- 253 (402)
T ss_pred CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccccccc-CCCCCccchhccCCCCCeEEEEechhhhccCC--
Confidence 356788999999999999999999999999999999999974432 1211111 1122 246888889999998643
Q ss_pred eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 385 (486)
|+++.+ ++..........+|.+. .+.. ....++..+++.+... .++.++..++++++.+
T Consensus 254 G~i~~~-~~~~~~l~~~~~~~~~t-----------------~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~ 313 (402)
T TIGR01821 254 GYIAAS-RKLIDAIRSYAPGFIFT-----------------TSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKN 313 (402)
T ss_pred ceeecC-HHHHHHHHHhCcCceec-----------------CcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHH
Confidence 554443 33332211111222211 1111 1112223344433212 3445566789999999
Q ss_pred HHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeee----eECCEeEEEEEecC
Q 038818 386 LVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHG----MVAGIYFIRFAVGA 460 (486)
Q Consensus 386 ~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~----~~~~~~~lR~~~~~ 460 (486)
.|+++ +++++ ++..+++.+.+.. ......+.++|.+ .|+. +.+. ...+..++|++++
T Consensus 314 ~L~~~-g~~~~-~~~~~i~~i~~~~--------------~~~a~~~~~~L~~~~Gi~-v~~~~~p~~~~g~~~lRis~~- 375 (402)
T TIGR01821 314 LLEAL-GIPVI-PNPSHIVPVIIGD--------------AALCKKVSDLLLNKHGIY-VQPINYPTVPRGTERLRITPT- 375 (402)
T ss_pred HHHHc-CCCcC-CCCCCEEEEEeCC--------------HHHHHHHHHHHHhcCCEE-EEeECCCCCCCCCceEEEEeC-
Confidence 99887 77765 3456677665432 1234567777765 4764 4332 2234568999995
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l 482 (486)
...|++|||+++++|+++.+++
T Consensus 376 ~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 376 PAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc
Confidence 5677889999999999988764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=181.19 Aligned_cols=307 Identities=12% Similarity=0.045 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHH--HHHccccC-CCCeEEEecCCCchHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQI--LNEIGREN-ISRLVVYGSDQTHSALQKA 188 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~--~~~~~~~~-~~~~~v~~s~~~H~s~~~a 188 (486)
..+..++.+.|++++|.+. .+++++|..||+.++.+..... +...+... .+++.|+.....|.|+..+
T Consensus 146 ~~~h~~LE~~LA~f~g~e~---------all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG 216 (476)
T PLN02955 146 TTYHRLLESSLADLKKKED---------CLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDG 216 (476)
T ss_pred hHHHHHHHHHHHHHHCCCc---------EEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHH
Confidence 4455566678899998764 5888899999987776642110 00000000 1466888999999999999
Q ss_pred HHHcCC-CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 189 AQIAGI-DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 189 ~~~~G~-g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
+++... +..+++.++ +.|+++|+++|+.... ...+|++....++.|.+-|+++|.++|++||++|+||.
T Consensus 217 ~~ls~~~~~a~~~~f~-------HND~~~Le~~L~~~~~---~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDE 286 (476)
T PLN02955 217 VRLAERQGNVEVFVYR-------HCDMYHLNSLLSSCKM---KRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDD 286 (476)
T ss_pred HHhccccCCceEEEeC-------CCCHHHHHHHHHhCCC---CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcc
Confidence 998732 111666666 4499999999976532 23467888889999999999999999999999999999
Q ss_pred cccchhccCccchhhhc--CC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 268 AYAGSACICPEFRHFID--GI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~--~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
||+.+.+. +..+.... ++ ...|.++.+..|.++.. .|+++.++ ............|++....
T Consensus 287 AH~~Gv~G-~~G~G~~e~~g~~~di~ii~~TLsKA~G~~--GGfi~gs~-~~~~~l~~~~~~~ifStal----------- 351 (476)
T PLN02955 287 AHGTFVCG-ENGGGVAEEFNCEADVDLCVGTLSKAAGCH--GGFIACSK-KWKQLIQSRGRSFIFSTAI----------- 351 (476)
T ss_pred cccCceec-CCCCcHHHHhCCCCCCcEEEEeCccchhcc--CceeecHH-HHHHHHHHhCCCCeecccc-----------
Confidence 99866542 22222211 22 46889999999998754 45555544 3332222234445543210
Q ss_pred cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccch
Q 038818 345 QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGA 424 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~ 424 (486)
....+.+...++..+-.+ ....++..++.++|++.+ ++.+ .++++.+.+..
T Consensus 352 -----pp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~~----G~~~----~sPI~pI~ig~-------------- 402 (476)
T PLN02955 352 -----PVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKALS----GVDI----SSPIISLVVGN-------------- 402 (476)
T ss_pred -----cHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc----CCCC----CCCEEEEEeCC--------------
Confidence 001112222333333111 245677888888888842 4432 36788777754
Q ss_pred HHHHHHHHHHHHhcCcEE---EeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 425 NELNRKLLESINASGQLY---VSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 425 ~~~~~~l~~~l~~~g~~~---~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.....+.++|.++|+.+ ..|++..+...+|++++. ..|++||++++++|.++.+.+
T Consensus 403 ~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA-~Ht~edId~lv~~L~~~~~~~ 462 (476)
T PLN02955 403 QEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSA-AHTTEDVKKLITALSSCLDFD 462 (476)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCC-CCCHHHHHHHHHHHHHHHhhh
Confidence 344567788888999842 234455677889999964 666679999999999887543
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=190.50 Aligned_cols=306 Identities=11% Similarity=0.056 Sum_probs=192.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH-
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK- 187 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~- 187 (486)
+....+|+.+++++++++|.+.. . +++++||+|+..++.+... +++.|+++..+|.++..
T Consensus 67 ~~~~~~e~~~~~~la~~~g~~~~-------~-i~~~sgt~al~~~l~~l~~-----------~gd~Vl~~~~~~~~~~~~ 127 (416)
T PRK00011 67 EYVDVVEQLAIDRAKELFGAEYA-------N-VQPHSGSQANAAVYFALLK-----------PGDTILGMDLAHGGHLTH 127 (416)
T ss_pred hHHHHHHHHHHHHHHHHhCCCce-------e-eecCCchHHHHHHHHHhcC-----------CCCEEEEeccccCCcccc
Confidence 44567787788899999998753 3 4445678888766655432 66778888888865321
Q ss_pred --HH--HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 --AA--QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 --a~--~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
.. ...|+ +++.+++++ +++.+|+++|++++++.. +.+|+++. +.+|...|+++|+++|+++|+++
T Consensus 128 ~~~~~~~~~g~---~~~~~~~~~-~~~~~d~~~l~~~i~~~~-----~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~l 196 (416)
T PRK00011 128 GSPVNFSGKLY---NVVSYGVDE-ETGLIDYDEVEKLALEHK-----PKLIIAGA--SAYSRPIDFKRFREIADEVGAYL 196 (416)
T ss_pred cccccccccee---eEeecCcCc-ccCCcCHHHHHHHHHhcC-----CCEEEECC--CcCCCccCHHHHHHHHHHcCCEE
Confidence 11 22344 777888864 247999999999997521 23455442 45677789999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
++|+||+.+.......... +..+|.++.++||++.+|. +|+++.++++...+.......+...
T Consensus 197 ivD~a~~~g~~~~g~~~~~---~~~~di~~~S~~K~l~g~~-gg~i~~~~~~~~~~l~~~~~~~~~~------------- 259 (416)
T PRK00011 197 MVDMAHIAGLVAAGVHPSP---VPHADVVTTTTHKTLRGPR-GGLILTNDEELAKKINSAVFPGIQG------------- 259 (416)
T ss_pred EEECcchhcccccCccCCC---CCCCcEEEecCCcCCCCCC-ceEEEeCCHHHHHHHHHHhCccccC-------------
Confidence 9999986544322111111 2268999999999997765 4566665544433222111111100
Q ss_pred ccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-CCCeeEEEEEeecCCCCCCCCCCc
Q 038818 344 WQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-PRNFAVVCFRVLPSASGLGDGKAN 421 (486)
Q Consensus 344 ~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~ 421 (486)
+... ...++..++.....+++.+++++..++++++++.|++. ++++.. ....+++.+.+.+..
T Consensus 260 -----~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~--------- 324 (416)
T PRK00011 260 -----GPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSKG--------- 324 (416)
T ss_pred -----CccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcccC---------
Confidence 0001 11223334433345677889999999999999999987 788763 233466666664321
Q ss_pred cchHHHHHHHHHHHHhcCcEEEeee------eECCEeEEEEEecC---CCCcHHHHHHHHHHHHHHHH
Q 038818 422 EGANELNRKLLESINASGQLYVSHG------MVAGIYFIRFAVGA---TLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 422 ~~~~~~~~~l~~~l~~~g~~~~~~~------~~~~~~~lR~~~~~---~~tt~~did~~i~~l~~~~~ 480 (486)
.....+.+.|.+.|+.+-... .......+|++... ...+++|++++++.|++++.
T Consensus 325 ----~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 325 ----LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred ----CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHh
Confidence 012346666767787532211 11123468986522 23468899999999998754
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-19 Score=181.16 Aligned_cols=316 Identities=11% Similarity=0.093 Sum_probs=207.5
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..|....+..++.+.+.+|+++.+|.+... ....++|+|+++++..++.+..+ +++.|++...+|
T Consensus 72 ~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~----~~~I~it~Ga~~al~~~~~~l~~-----------~Gd~Vlv~~P~y 136 (405)
T PRK06207 72 QAYTEYRGDADIRELLAARLAAFTGAPVDA----ADELIITPGTQGALFLAVAATVA-----------RGDKVAIVQPDY 136 (405)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCCEEEeCCcHHHHHHHHHHhcC-----------CCCEEEEeCCCc
Confidence 356555567889999999999999964220 02689999999988776665543 677888898999
Q ss_pred hHHHHHHHHcCCCCCCeEEEecC---CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHH
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTT---KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIA 256 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d---~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~ 256 (486)
+.....++.+|. +++.||++ .++++.+|+++|++++++.+ .+|+++.++||||.+-+ +++|+++|
T Consensus 137 ~~~~~~~~~~g~---~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~------k~v~l~~P~NPTG~~~s~e~l~~l~~~a 207 (405)
T PRK06207 137 FANRKLVEFFEG---EMVPVQLDYLSADKRAGLDLDQLEEAFKAGV------RVFLFSNPNNPAGVVYSAEEIAQIAALA 207 (405)
T ss_pred hhHHHHHHHcCC---EEEEEeccccCcccCCCcCHHHHHHhhhhcC------eEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence 999999999999 99999986 22357899999999886543 36888999999999976 77889999
Q ss_pred HHhCceEEeeccccchhccCccchhhhcCCC-CCC--ceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GAD--SFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aD--si~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
++||+++++|.+|+........... +..+. ..| .+..++.|.++.| .-+|+++.. +....+..... .+...
T Consensus 208 ~~~~~~iI~De~Y~~~~~~~~~~~~-~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~-~~l~~~~~~~~-~~~~~-- 282 (405)
T PRK06207 208 RRYGATVIVDQLYSRLLYDGTSYTH-LRALPIDPENVITIMGPSKTESLSGYRLGVAFGS-PAIIDRMEKLQ-AIVSL-- 282 (405)
T ss_pred HHcCCEEEEeccccccccCCCCCCc-hhcCCCCcCcEEEEecchhhccCcccceEEEEcC-HHHHHHHHHHH-hHhcc--
Confidence 9999999999999764432111111 11111 112 4566789999844 458887654 33332221111 11000
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee-EEEEEee
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA-VVCFRVL 409 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-~v~f~~~ 409 (486)
....+...+....+ +...+++.+++..+.++.+.+.|++++++++. +|..+ .+.+++.
T Consensus 283 ------------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~fl~~~l~ 343 (405)
T PRK06207 283 ------------------RAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVR-APQAGSYLFPRLP 343 (405)
T ss_pred ------------------CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCeeEEEEEeCc
Confidence 00111222222223 23446777788888888999999888778765 44444 4444443
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.. . + ...+.+.+. +.|+.+..+..+. +.+++|+++.. +++++++.++.|.+++++.
T Consensus 344 ~~~---------~--~--~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~---~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 344 RLA---------V--S--LHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ---DHAAAVAAAERIAQLIERY 403 (405)
T ss_pred ccC---------C--C--HHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHh
Confidence 211 0 1 234566665 5687655544332 35799999963 4678999999998887664
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-19 Score=182.71 Aligned_cols=338 Identities=14% Similarity=0.102 Sum_probs=214.4
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|....+..++.+.+.+|+.+..|.+.+ ..++++|+|+++++..++.+.... +++.|+++..+
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~-----~~~I~it~Ga~~al~~~~~~l~~~----------~gD~Vlv~~P~ 172 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDGVPKD-----PSDIFLTDGASSGIKLLLQLLIGD----------PSDGVMIPIPQ 172 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcCCCCC-----hhhEEEcCCHHHHHHHHHHHhccC----------CCCEEEECCCC
Confidence 345776667888999999999988786533 137899999999988777765411 67789999999
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKR 258 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~ 258 (486)
+......++..|. +++.+|++++++|.+|+++|++++++..+++..+.+|+++.++||||.+-+ +++|+++|++
T Consensus 173 y~~y~~~~~~~g~---~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~ 249 (481)
T PTZ00377 173 YPLYSAAITLLGG---KQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYE 249 (481)
T ss_pred chhHHHHHHHcCC---EEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999 999999986556799999999999875444445667777789999999977 8899999999
Q ss_pred hCceEEeeccccchhccC-ccc---hhhhcCCCC-----CCcee-ecccccc-C-CCCcceEEEee--CchHHHHHhcCC
Q 038818 259 YSIWVHVDAAYAGSACIC-PEF---RHFIDGIEG-----ADSFS-LNAHKWF-F-TTLDCCCLWVK--NPNALIKALSTN 324 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~-~~~---~~~~~~~~~-----aDsi~-~~~hK~l-~-~p~~~g~~~~~--~~~~~~~~~~~~ 324 (486)
||+|+++|.+|+...+.. ..+ .....++.. ...++ .+..|.+ + ...-+|++++. +++.........
T Consensus 250 ~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~ 329 (481)
T PTZ00377 250 KGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLA 329 (481)
T ss_pred CCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHh
Confidence 999999999997543311 111 111111111 11343 4689975 3 45678988762 444333221111
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-----chH-------HHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-----GVA-------NLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-----g~~-------g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
..++ + ...+...++...+ +.. ...+..++..+.++.+.+.|+++++
T Consensus 330 ~~~~-------------------~---~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g 387 (481)
T PTZ00377 330 SINL-------------------C---SNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEG 387 (481)
T ss_pred heec-------------------C---CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1010 0 1122223333322 111 1222223346777888999998888
Q ss_pred eEEecCCCeeEEEE-Eee-cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC---CEeEEEEEecCCCCcHHH
Q 038818 393 FEIVAPRNFAVVCF-RVL-PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA---GIYFIRFAVGATLTEDRH 467 (486)
Q Consensus 393 ~~~~~~~~~~~v~f-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---~~~~lR~~~~~~~tt~~d 467 (486)
+++. +|+.+.+.| ++. +....... ...........+...+.+.|+.++.+..+. +..++|+++. +++++
T Consensus 388 ~~~~-~p~gg~fl~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~---~~~e~ 461 (481)
T PTZ00377 388 VSCQ-PVEGAMYAFPRIELPEKAIQEA--KERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL---PPEEQ 461 (481)
T ss_pred cEee-cCCeeEEEEeeccCchhhHHHH--HhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC---CCHHH
Confidence 8876 555555555 332 11000000 000000001122344556687666555443 3468999984 56779
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 038818 468 VIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 468 id~~i~~l~~~~~~l~~~ 485 (486)
+++.++.|.+++++.+++
T Consensus 462 l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 462 IEEMVKKIKEFHESFMKK 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998877653
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=183.56 Aligned_cols=296 Identities=13% Similarity=0.116 Sum_probs=190.9
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++.+.+++++|.+. .+++++|++||..++...... .++.+|+++...|.++..+++..|.
T Consensus 94 ~~Le~~la~~~g~~~---------~i~~~sG~~a~~~~i~~l~~~---------~~g~~vi~~~~~h~s~~~~~~~~g~- 154 (410)
T PRK13392 94 VLLERELADLHGKES---------ALLFTSGYVSNDAALSTLGKL---------LPGCVILSDALNHASMIEGIRRSGA- 154 (410)
T ss_pred HHHHHHHHHHhCCCC---------EEEECcHHHHHHHHHHHHhcC---------CCCCEEEEehhhhHHHHHHHHHcCC-
Confidence 355677888888642 466667788988777643221 0456788888899999888888888
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI 275 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~ 275 (486)
++..++.+ |.+.+++.++... ...+.+|+++.++|++|.+-|+++|.++|++||+++++|+||+.+.+
T Consensus 155 --~~~~~~~~-------d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~- 222 (410)
T PRK13392 155 --EKQVFRHN-------DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLY- 222 (410)
T ss_pred --eEEEEeCC-------CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCc-
Confidence 77776532 5677777776432 12356899999999999999999999999999999999999984432
Q ss_pred Cccchhh--hcC-CCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-
Q 038818 276 CPEFRHF--IDG-IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR- 351 (486)
Q Consensus 276 ~~~~~~~--~~~-~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~- 351 (486)
.+..... ..+ .+..|.++.+++|+++.+. |++.. +++..........+|.+.. +..
T Consensus 223 g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~~~-~~~~~~~l~~~~~~~~~s~-----------------~~~~ 282 (410)
T PRK13392 223 GARGGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYIAA-SADLIDFVRSFAPGFIFTT-----------------ALPP 282 (410)
T ss_pred CCCCCchhhhccCCCCCcEEEEEChHhhhccc--chhhc-CHHHHHHHHHhCcchhccC-----------------cCCH
Confidence 1111111 111 2357888889999998753 55543 4443332222222232111 001
Q ss_pred CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHH
Q 038818 352 FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKL 431 (486)
Q Consensus 352 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l 431 (486)
....++..+++.+ +......++..++++++.+.|++. ++++. ++..+++.+.+.. +....++
T Consensus 283 ~~~~a~~aaL~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~--------------~~~~~~~ 344 (410)
T PRK13392 283 AVAAGATAAIRHL--KTSQTERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVGD--------------PTLCKAI 344 (410)
T ss_pred HHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC--------------HHHHHHH
Confidence 1122333444433 222344567788899999999887 77765 4556666555431 2224567
Q ss_pred HHHHH-hcCcEEEeee----eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 432 LESIN-ASGQLYVSHG----MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 432 ~~~l~-~~g~~~~~~~----~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.++|. ++|+. +.+. ...+..++|++++ ...|++|+|+++++|+++.+++
T Consensus 345 ~~~L~~~~GI~-v~~~~~p~~~~~~~~lRis~~-~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 345 SDRLMSEHGIY-IQPINYPTVPRGTERLRITPT-PLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred HHHHHHhCCEE-EeeeCCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 77775 56764 3332 1234578999985 4667779999999999987754
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=171.23 Aligned_cols=306 Identities=18% Similarity=0.192 Sum_probs=204.5
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|...|....||++ +++++|-+ .|.|.++||++|+.|++..+.. ++..|++.+.+
T Consensus 49 DdVyGeD~tt~rLE~~----vA~l~GKE---------AgLFv~SGTmgNllaIm~Hc~~----------rg~eii~gd~~ 105 (384)
T KOG1368|consen 49 DDVYGEDPTTNRLEQR----VAELFGKE---------AGLFVPSGTMGNLLAIMVHCHQ----------RGSEIIVGDRA 105 (384)
T ss_pred cccccCCccHHHHHHH----HHHHhCcc---------ceeeecccccccHHHHHHHhcC----------CCceEEeccch
Confidence 3577788888999987 56667654 4689999999999999998875 77889999999
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH-HCCC-ccEEEEeecCCcccc-ccCCc---hHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI-QAGL-IPLFLCATVGTTAIT-TVDPL---GPLCDI 255 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~-~~g~-~p~~vv~~~gtt~~G-~idpl---~~I~~i 255 (486)
|.-.+....+.-++...++.|...+ ++.||++++|+++.... .-+. ...+|++..-.+.+| .+-|| ++|.++
T Consensus 106 HI~~~E~gg~s~l~gv~~~tv~~e~--dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~l 183 (384)
T KOG1368|consen 106 HIHRYEQGGISQLAGVHVRTVKNEN--DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKAL 183 (384)
T ss_pred heeehhccChhhhccceeEeeeeCC--CCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHH
Confidence 9776554333322222777776654 67999999999998432 2222 335677776666667 66665 567788
Q ss_pred HHHhCceEEeeccccch---hccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 256 AKRYSIWVHVDAAYAGS---ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~---~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
|+++|+.||+|||.-.. +.-.|- +.. .+.+||+++...|.+++|. |-+++..++.+.++. ++..
T Consensus 184 ak~~glkLH~DGARi~NAavasgV~v-k~i---~~~fDSVsiCLSKglgAPV--GSViVG~k~FI~kA~-----~~RK-- 250 (384)
T KOG1368|consen 184 AKRHGLKLHMDGARIFNAAVASGVPV-KKI---CSAFDSVSICLSKGLGAPV--GSVIVGSKDFIDKAR-----HFRK-- 250 (384)
T ss_pred HhccCCeeecchhhhhhHHHHcCCCH-HHH---HHhhhhhhhhhhccCCCCc--ccEEEccHHHHHHHH-----HHHH--
Confidence 99999999999985222 122221 111 2479999999999999995 445565554443322 1111
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecC
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPS 411 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~ 411 (486)
++.+|-|-...-+.+++-.+. +.+ ..+++.++.|+.+++.++..+++++-.+ .+++++...+..+
T Consensus 251 ------------alGGGmRQsGvLaaaaLval~-~~~-~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~ 316 (384)
T KOG1368|consen 251 ------------ALGGGMRQSGVLAAAALVALD-ENV-PLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQA 316 (384)
T ss_pred ------------HhcCchhHHHHHHHHHHHHhh-cch-HHHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccc
Confidence 112222222211122222221 222 3667778889999999998877888655 5778888776543
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 412 ASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
. ...+.+.+++.+.|+..+.... ..+|+++ ++..|.++++.+++.+.+
T Consensus 317 ~-------------~~~~~l~~~~~k~gi~lm~~~s----~r~Rivl-h~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 317 R-------------LTAEELCKFLEKNGILLMGGAS----RRIRIVL-HHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred c-------------CCHHHHHHHHHHCCeEEeeccc----cceEEEE-EEecCHHHHHHHHHHHHH
Confidence 2 2245678888888987665432 3489998 678899999999999954
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=181.21 Aligned_cols=314 Identities=12% Similarity=0.071 Sum_probs=200.2
Q ss_pred hhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEE
Q 038818 96 SGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVV 175 (486)
Q Consensus 96 ~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v 175 (486)
..+......|....+..++++.+.+++. +.+++ ..++|+|+++++..++.+... +++.|
T Consensus 49 ~~~~~~~~~Y~~~~G~~~lr~~ia~~~~---~~~~~-------~vi~t~G~~~al~~~~~~l~~-----------~gd~V 107 (373)
T PRK07324 49 QELGQKKLTYGWIEGSPEFKEAVASLYQ---NVKPE-------NILQTNGATGANFLVLYALVE-----------PGDHV 107 (373)
T ss_pred HHHhcCCccCCCCCCCHHHHHHHHHHhc---CCChh-------hEEEcCChHHHHHHHHHHhCC-----------CCCEE
Confidence 3344444455554455666666555543 34443 689999999999887776543 56778
Q ss_pred EecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHH
Q 038818 176 YGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPL 252 (486)
Q Consensus 176 ~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I 252 (486)
+++..+|.+....++..|+ +++.+|+++++.+.+|+++|++++.++ +.+|+++.++|+||.+-+ +++|
T Consensus 108 l~~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~d~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i 178 (373)
T PRK07324 108 ISVYPTYQQLYDIPESLGA---EVDYWQLKEENGWLPDLDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEI 178 (373)
T ss_pred EEcCCCchhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHH
Confidence 8888999999999999999 999999986445789999999887643 347888999999999977 8999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNK 331 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~ 331 (486)
+++|++||+++++|++|..... ...........+. .....++.|.++.| ..+|+++. ++.......... .+..
T Consensus 179 ~~~a~~~~~~ii~De~y~~l~~-~~~~~s~~~~~~~-~I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~~-~~~~-- 252 (373)
T PRK07324 179 VEIARSVDAYVLSDEVYRPLDE-DGSTPSIADLYEK-GISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYR-DYTM-- 252 (373)
T ss_pred HHHHHHCCCEEEEEcccccccc-CCCCCChhhccCC-EEEEecchhhcCCccceeEEEec-CHHHHHHHHHHh-CcEE--
Confidence 9999999999999999966432 1111111111111 23455789998744 45788877 444433221111 1100
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE-Ee
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF-RV 408 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~ 408 (486)
.+ ...+..+++...+. ...++++.+...++.+.+.+.|++.+++.+..+ ..+...| ++
T Consensus 253 ---------------~~---~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p-~gg~~~~i~~ 313 (373)
T PRK07324 253 ---------------IC---AGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKP-KAVSTSFVKL 313 (373)
T ss_pred ---------------ec---CChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECC-CceEEEEEEe
Confidence 00 12223333333332 233455556666778888888988878876644 4344333 33
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.... + ..++.+++. +.|+.+.++..+...+++|+++.. +++.+++.++.|.+.+++
T Consensus 314 ~~~~------------~--~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~---~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 314 DVDM------------P--SEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC---DTETLKKGLKKLSEFLRE 370 (373)
T ss_pred CCCC------------C--HHHHHHHHHHhcCEEEECccccCCCCeEEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 3210 1 234555554 567765555545446799999853 467889988888887765
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-20 Score=173.03 Aligned_cols=384 Identities=15% Similarity=0.118 Sum_probs=245.8
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcC--CCccc---cccChhhHHHHHHHHH
Q 038818 46 APYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFN--VVGFN---WMSSPAATELENIVMD 120 (486)
Q Consensus 46 ~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n--~~~~~---~~~~~~~~~le~~~~~ 120 (486)
.|....|+-|+++.+.++-..+..-.....-+|-+. .-+-. ..++....+. .+.+. -++..+..++-.++.+
T Consensus 40 ~~~Pe~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCT--MK~Np-~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq~ 116 (496)
T COG1003 40 PPLPEHSETEMVRHYTRLSQKDLAVDRGMIPLGSCT--MKLNP-KAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQE 116 (496)
T ss_pred CCCccccHHHHHHHHHHHHhcccccccCccCCcccc--cccCc-hhhcccccccchhhcCCCCChHHHHHHHHHHHHHHH
Confidence 343336899999999987555544333333344221 00000 1122221221 11222 2344556788889999
Q ss_pred HHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeE
Q 038818 121 WLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFR 200 (486)
Q Consensus 121 ~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~ 200 (486)
||+++.|++.- .+=...|+++-+++|++.|.....+ |.. .+.++++++.+|-.....|.+.|+ +|+
T Consensus 117 ~L~~ITG~Dav--------sLQP~AGAqGE~aGll~Ir~YHe~r-G~~--~R~~~LIP~SAHGTNPASAam~G~---~VV 182 (496)
T COG1003 117 WLKEITGMDAV--------SLQPNAGAQGEYAGLLAIRAYHESR-GEG--HRNICLIPDSAHGTNPASAAMAGF---KVV 182 (496)
T ss_pred HHHHhcCCcee--------eccCCCCcchhhHHHHHHHHHHHHc-CCC--cCcEEEeeccccCCChhhHhhcCc---eEE
Confidence 99999999752 2334567788888998888765433 221 678899999999999999999999 999
Q ss_pred EEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-CCchHHHHHHHHhCceEEeeccccchhccCccc
Q 038818 201 AIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEF 279 (486)
Q Consensus 201 ~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~ 279 (486)
.|++++ +|.+|+++|++++.++++ .+.+|.++| .|.+ .+|.+|++|.+++|-.+..|||.--..+..-.
T Consensus 183 ~V~~~~--~G~VDlddLk~k~~~~~A------alMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r- 252 (496)
T COG1003 183 VVKCDE--NGNVDLDDLRAKAEDNLA------ALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLAR- 252 (496)
T ss_pred EEecCC--CCCccHHHHHHHhcccee------EEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccc-
Confidence 999986 679999999999987654 678888877 5777 57999999999999999999987432221111
Q ss_pred hhhhcCCCCCCceeeccccccCCCCc-----ceEEEeeCchHHHHHhcCCcccccCccC--CCCC-ccCC-CCccccCCC
Q 038818 280 RHFIDGIEGADSFSLNAHKWFFTTLD-----CCCLWVKNPNALIKALSTNPEFLRNKAS--DSKQ-VVDY-KDWQITLSR 350 (486)
Q Consensus 280 ~~~~~~~~~aDsi~~~~hK~l~~p~~-----~g~~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~-~~~~-~~~~~~~sr 350 (486)
.|--++|.+-++.||+|..|.| .|.+.++.. +. +|+-.... +... ..+. ..++..-++
T Consensus 253 ----PGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~--L~-------pfLP~p~~~~~~~~y~~~~~~~~s~g~~~ 319 (496)
T COG1003 253 ----PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH--LA-------PFLPGPVVYHDVGEYRLDYDGKKSIGVSA 319 (496)
T ss_pred ----ccccccceEEeecccccccCCCCCCCCCCceehHhh--cc-------ccCCCCcccCCCccccccCCCCccceeec
Confidence 1223899999999999998754 556666632 21 22211100 0000 0000 001111111
Q ss_pred C----CCc-hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCcc
Q 038818 351 R----FRA-LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 351 ~----~~~-l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
. +.. ...|++++.+|.+|+++.-+...-+|+|+.++|+. .++++..+. ...+.+...+-. +
T Consensus 320 a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~---------~ 388 (496)
T COG1003 320 APYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLK---------K 388 (496)
T ss_pred cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHhH---------h
Confidence 1 122 47799999999999999999999999999999986 466655443 455555554321 1
Q ss_pred chHHHHHHHHHHHHhcCcEEEeeeeECC---EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 423 GANELNRKLLESINASGQLYVSHGMVAG---IYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~---~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
..+.....+.++|.+.|. -.||.... ...+-+=.+ ..-+++++|++++++.++.++.-
T Consensus 389 ~~Gv~~~DvAKrLlD~Gf--HaPT~~FPliV~~tLMIEPT-EsEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 389 ETGVRALDVAKRLLDYGF--HAPTMYFPLIVAGTLMIEPT-ESESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred hcCCcHHHHHHHHHhcCC--CCCcccCccccccceeecCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 112223455666777785 34443322 233333333 24466899999999999987654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=178.21 Aligned_cols=368 Identities=13% Similarity=0.082 Sum_probs=193.0
Q ss_pred ChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHH-HHHh--hc---CCCcccccc
Q 038818 34 EPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGE-MLSS--GF---NVVGFNWMS 107 (486)
Q Consensus 34 ~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~l~~--~~---n~~~~~~~~ 107 (486)
=|++++..-+..+|+. .|+.|+++++.++..+|.. ...|+|--...--.|+++.+ .+.. ++ .++...-++
T Consensus 31 IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~---~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQ 106 (429)
T PF02347_consen 31 IPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKS---YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQ 106 (429)
T ss_dssp S-GGG-SS-----------HHHHHHHHHHHHTTS-----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBH
T ss_pred CCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCC---CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHH
Confidence 3677776667788855 8999999999998777654 44566644334456666666 3211 12 233322233
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
|.....+|. ..+++++.|++.. +..+..++|.+-- |+.++.+.. + ..+.+|+++...|+....
T Consensus 107 G~Lq~lfe~--Qs~i~eLTGmdva-------NaSlyd~atA~aE-a~~ma~r~~-~------~~~~~vlv~~~~hP~~~~ 169 (429)
T PF02347_consen 107 GRLQALFEY--QSMICELTGMDVA-------NASLYDGATAAAE-AMLMAVRAT-K------RKRNKVLVPESLHPQTRA 169 (429)
T ss_dssp HHHHHHHHH--HHHHHHHHTSSEE--------SEBSSCCHHHHH-HHHHHHHHH-T------T---EEEEETTS-CHHHH
T ss_pred HHHHHHHHH--HHHHHHhhCCCcc-------CCCCCChhHHHHH-HHHHHHHhc-c------cCCcEEEEcCCcChhhHH
Confidence 444444554 4999999999875 5678888875443 333333221 0 023578899999998776
Q ss_pred HHHH----cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 AAQI----AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a~~~----~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
.++. .|+ +++.+|.++ .+..| ++ ....|+++.|++ .|.++++++|++++|++|..+
T Consensus 170 v~~t~a~~~g~---~iv~~~~~~--~~~~d--------~~------~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~ 229 (429)
T PF02347_consen 170 VLRTYAAPLGI---EIVEVPLDE--DGTTD--------DD------DTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALV 229 (429)
T ss_dssp HHHHHCCHCCE---EEEEE-BBT--TCSB---------ST------TEEEEEEESS-T-TSB--THHHHHHHHHHTT-EE
T ss_pred HHHHhhhhCCe---EEEEecccc--cCCcc--------cc------CeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEE
Confidence 5544 566 888998875 34666 22 245677777765 799999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-----cceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-----DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-----~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
++ ++-.-........... +||.+ +.-||.|+.|. ++|++.++++ .....|+.+.+...+..+.
T Consensus 230 ~~-~ad~~aL~~l~~Pge~-----GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~-----l~r~lPGRiVG~t~D~~G~ 297 (429)
T PF02347_consen 230 IV-GADPNALGGLKSPGEY-----GADIV-VGEHQTFGIPMGFGGPGAGFFAVRED-----LVRQLPGRIVGQTKDADGK 297 (429)
T ss_dssp EE-CGGCCGCCTC--GGGG-----T-SEE-EECCTTTT---CCC-S--EEEEE-GG-----GGGGS-S-EEEEEEBCCCS
T ss_pred EE-ecCHHHHhCcCChhhc-----CccEE-eeCCCCCcccCCCCCCCeeeEEEhhh-----hhhhCCCceeccccccccc
Confidence 88 6654333222211221 89999 55588888775 4778888876 2244566655432222222
Q ss_pred cCCCCcccc----CCCCC------------CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 339 VDYKDWQIT----LSRRF------------RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 339 ~~~~~~~~~----~sr~~------------~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
..+. .+++ .-||. .++..+.++..+|.+|++++.++...+|+|++++|++..++.+ ..+.+.
T Consensus 298 ~~~~-ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~-~~~~f~ 375 (429)
T PF02347_consen 298 RAFV-LTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPF-DNPFFF 375 (429)
T ss_dssp CCEE-EE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECS-SSSSBS
T ss_pred ceee-eccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCce
Confidence 2211 1111 01121 1245677888899999999999999999999999998733433 233333
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
.+.....+. .. ..++.++....| +.... .+...+-+|++ ..+|++|||++++++
T Consensus 376 e~v~~~~~~-------------~~-~~~l~~~~~~~g---l~~~~-~~~~~~li~~T-E~~t~edid~lv~~f 429 (429)
T PF02347_consen 376 EFVVVFSKD-------------KE-VEELLKRGIEGG---LNLRY-PDDGALLICVT-ETRTKEDIDRLVEAF 429 (429)
T ss_dssp SEEEEESS--------------HH-HHHHHHTT-------EEEGG-G-SSEEEEE---TT--HHHHHHHHH--
T ss_pred eeeeecCCc-------------HH-HHHHHHHHHhcC---CCccc-cCCCeEEEEcc-CCCCHHHHHHHHhcC
Confidence 333333221 12 223566555555 22111 12237788986 577888999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=179.02 Aligned_cols=342 Identities=10% Similarity=0.042 Sum_probs=215.6
Q ss_pred HHHHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCc-cCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 86 IAGFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFL-FSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~-~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
++..+.+.+...++.+ ...|....+..++.+.+.+|+.+.++.+.... .-.....++|+|+++++..++.+...
T Consensus 51 p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~---- 126 (412)
T PTZ00433 51 TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCD---- 126 (412)
T ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcC----
Confidence 4556666666655532 34555444567888888899887654110000 00113789999999998877766543
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI 243 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~ 243 (486)
+++.|+++..+|..+...++..|+ +++.+|+++++++.+|+++|++++++. +.+|+++.++|||
T Consensus 127 -------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPt 190 (412)
T PTZ00433 127 -------EGDNILVPAPGFPHYETVCKAYGI---EMRFYNCRPEKDWEADLDEIRRLVDDR------TKALIMTNPSNPC 190 (412)
T ss_pred -------CCCEEEEccCCcccHHHHHHHcCC---EEEEEecCccccCcCCHHHHHHHhccC------ceEEEEeCCCCCC
Confidence 567888899999999999999999 999999976456799999999887653 3467888999999
Q ss_pred cccC---CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC-CCC-ceeeccccccC-CCCcceEEEeeCc---
Q 038818 244 TTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GAD-SFSLNAHKWFF-TTLDCCCLWVKNP--- 314 (486)
Q Consensus 244 G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aD-si~~~~hK~l~-~p~~~g~~~~~~~--- 314 (486)
|.+- .+++|+++|+++|+++++|++|..+......+.. +..+. ..+ .+..++.|.++ ...-+|+++..++
T Consensus 191 G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~ 269 (412)
T PTZ00433 191 GSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTS-VADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGN 269 (412)
T ss_pred CcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccc-hhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCccc
Confidence 9864 5788899999999999999999754321111111 11111 112 44567899985 5567999887332
Q ss_pred --hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 315 --NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 315 --~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
..+. .+........ ....+...+....+ ..+.+++..++..+..+.+.+.|++
T Consensus 270 ~~~~~~-~~~~~~~~~~---------------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 327 (412)
T PTZ00433 270 GGDFLD-GMKRLGMLVC---------------------GPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE 327 (412)
T ss_pred HHHHHH-HHHHHhhccC---------------------CCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 1111000000 01122222222222 1345667777788888899999988
Q ss_pred CCCeEEecCCCeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHH
Q 038818 390 DNRFEIVAPRNFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467 (486)
Q Consensus 390 ~~~~~~~~~~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~d 467 (486)
..++++. +|+.+. +.+++...... . .....++.+.+. +.|+.+..+..+...+++|+++.. .+++
T Consensus 328 ~~~~~~~-~p~gg~f~~~~l~~~~~~-------~--~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~---~~e~ 394 (412)
T PTZ00433 328 CIGLSPT-MPRGSMFLMSRLDLEKFR-------D--IKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR---PVEV 394 (412)
T ss_pred CCCCccc-CCCeeEEEEEEechhhcC-------C--CCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC---CHHH
Confidence 6667654 444444 44455321000 0 000235666666 468765544444446799999953 3678
Q ss_pred HHHHHHHHHHHHHHHh
Q 038818 468 VIAAWKVVQEKLDGIL 483 (486)
Q Consensus 468 id~~i~~l~~~~~~l~ 483 (486)
+++.++.|.+++++..
T Consensus 395 l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 395 LREAVERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998887643
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=181.34 Aligned_cols=300 Identities=12% Similarity=0.105 Sum_probs=191.8
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++++++++|.+++ ..++|+|+|+++..++.+... ++..|+++..+|......+...|.
T Consensus 69 ~~lr~~ia~~l~~~~~-------~v~~~~g~t~al~~~~~~~~~-----------~gd~vl~~~p~y~~~~~~~~~~g~- 129 (380)
T PRK06225 69 PELRELILKDLGLDDD-------EALITAGATESLYLVMRAFLS-----------PGDNAVTPDPGYLIIDNFASRFGA- 129 (380)
T ss_pred HHHHHHHHHhcCCCCC-------cEEEeCCHHHHHHHHHHHhcC-----------CCCEEEEcCCCCcchHHHHHHhCc-
Confidence 3456778888898765 789999999998877766532 456677888888888888899999
Q ss_pred CCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHHHHhCceEEeeccccc
Q 038818 196 PKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 196 ~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
+++.+|++. .+++.+|++++++.+.+.+ .+|+++.++|++|.+ +++++|+++|+++|+++++|++|+.
T Consensus 130 --~~~~v~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~ 201 (380)
T PRK06225 130 --EVIEVPIYSEECNYKLTPELVKENMDENT------RLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRD 201 (380)
T ss_pred --eEEeeccccccCCccCCHHHHHhhcCCCc------eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHH
Confidence 999999753 2347899999999886543 367777899999987 4599999999999999999999865
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
+....+.... + ......+..+++|+++.| ..+|+++.++ .... .+.. +... + .
T Consensus 202 ~~~~~~~~~~-~--~~~~~i~~~s~SK~~g~~G~RiG~i~~~~-~l~~-~~~~---~~~~--------------~--~-- 255 (380)
T PRK06225 202 FAREHTLAAE-Y--APEHTVTSYSFSKIFGMAGLRIGAVVATP-DLIE-VVKS---IVIN--------------D--L-- 255 (380)
T ss_pred HhccCCchhh-c--CCCCEEEEeechhhcCCccceeEEEecCH-HHHH-HHHH---HHhc--------------c--c--
Confidence 3211110000 0 112334556778999644 3478888754 3332 2211 1000 0 0
Q ss_pred CCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 351 RFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-APRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 351 ~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
....+...++...+ ..+.+++..+...++.+.+.+.|++++++.+. .++..+.+.+.+.+.. . +
T Consensus 256 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~---------~--~-- 322 (380)
T PRK06225 256 GTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG---------I--D-- 322 (380)
T ss_pred CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc---------C--C--
Confidence 01122222222221 22334444455556677788888887775432 3445556655554321 0 1
Q ss_pred HHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 428 NRKLLESINASGQLYVSHGMV---AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
..++.++|.++|+.+.++... .+..++|+++.. ++++++++++.|+++++.+.+
T Consensus 323 ~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~---~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 323 PEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI---PREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred HHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC---CHHHHHHHHHHHHHHHHHhhc
Confidence 235666777778744332211 235689999842 578999999999999988764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=180.27 Aligned_cols=294 Identities=14% Similarity=0.099 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
..+..++.+++++++|.+ ..+++++|+++++.++..... +++.|+++...|.+...++..
T Consensus 83 ~~~~~~l~~~la~~~~~~---------~~i~~~~g~~~~~~~l~~~~~-----------~gd~V~~~~~~~~~~~~~~~~ 142 (385)
T PRK05958 83 SPAHEALEEELAEWFGAE---------RALLFSSGYAANLAVLTALAG-----------KGDLIVSDKLNHASLIDGARL 142 (385)
T ss_pred cHHHHHHHHHHHHHhCCC---------cEEEECcHHHHHHHHHHHhCC-----------CCCEEEEeCccCHHHHHHHHh
Confidence 445666778889988843 357777788888765544322 567888899999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|. +++.+|. .|++.+++++++.. ..+.++++....+++|.+.|+++|+++|++||+|+++|++|+.
T Consensus 143 ~g~---~~~~~~~-------~d~~~l~~~i~~~~---~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~ 209 (385)
T PRK05958 143 SRA---RVRRYPH-------NDVDALEALLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGT 209 (385)
T ss_pred cCC---ceEEeCC-------CCHHHHHHHHHhcc---CCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccc
Confidence 898 8888764 38899999887531 1234566667788999999999999999999999999999965
Q ss_pred hhccCc-c-chhhhcCCC-CCC-ceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc
Q 038818 272 SACICP-E-FRHFIDGIE-GAD-SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 272 ~~~~~~-~-~~~~~~~~~-~aD-si~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
+.+... . ... ..++. ..| .+..++||+++.+ | |+++. ++............+.. .
T Consensus 210 g~~~~~g~~~~~-~~~~~~~~~~i~~~s~sK~~~~~-G-g~~~~-~~~~~~~~~~~~~~~~~-----------------~ 268 (385)
T PRK05958 210 GVLGPQGRGLAA-EAGLAGEPDVILVGTLGKALGSS-G-AAVLG-SETLIDYLINRARPFIF-----------------T 268 (385)
T ss_pred cccCCCCCchHH-hhCCCCCCceEEEEechhhcccC-C-cEEEc-CHHHHHHHHHhCcccee-----------------c
Confidence 433211 0 111 11221 234 5578899999753 3 55544 44333221111111211 1
Q ss_pred CCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 348 LSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 348 ~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
++.. ....++..+++.+.. . .++.++..++++++.+.|++. ++++. ++..+++.|.+.. ..
T Consensus 269 ~~~~~~~~aa~~aal~~~~~-~-~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~--------------~~ 330 (385)
T PRK05958 269 TALPPAQAAAARAALRILRR-E-PERRERLAALIARLRAGLRAL-GFQLM-DSQSAIQPLIVGD--------------NE 330 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC--------------HH
Confidence 1111 112233344444321 1 467788889999999999886 57754 4566777777642 12
Q ss_pred HHHHHHHHHHhcCcEEEeeee---ECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHGM---VAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~~---~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
...++.+.|.++|+.+..... ..+..++|+++. ..++++|++++++.|+++
T Consensus 331 ~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~-~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 331 RALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLT-AAHTEADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHHCCceEecccCCCCCCCCceEEEEec-CCCCHHHHHHHHHHHHhc
Confidence 345678888888875432111 123568999984 567888999999999875
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-19 Score=178.64 Aligned_cols=338 Identities=9% Similarity=0.033 Sum_probs=216.4
Q ss_pred HHHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
|..+.+.+...+..+ ...|....+..++++.+.+++.+..|.+.+ ...+++|+|+++++..++.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~------ 118 (409)
T PLN02656 50 THVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLS-----LDDVFITSGCTQAIDVALSMLAR------ 118 (409)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-----cccEEEeCChHHHHHHHHHHHhC------
Confidence 445555565555443 345665666788989999999888776432 12789999999998777665533
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..+|..+...+...|+ +++.+|+++++++.+|+++|++++++. +.+|+++.++|+||.
T Consensus 119 -----~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~ 184 (409)
T PLN02656 119 -----PGANILLPRPGFPIYELCAAFRHL---EVRYVDLLPEKGWEVDLDAVEALADQN------TVALVIINPGNPCGN 184 (409)
T ss_pred -----CCCeEEEeCCCCCcHHHHHHHcCC---EEEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEECCCCCCCC
Confidence 667788898999888888889999 999999865445789999999887643 246788889999999
Q ss_pred c---CCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCC-C-ceeeccccccC-CCCcceEEEeeC------
Q 038818 246 V---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA-D-SFSLNAHKWFF-TTLDCCCLWVKN------ 313 (486)
Q Consensus 246 i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~a-D-si~~~~hK~l~-~p~~~g~~~~~~------ 313 (486)
+ +++++|+++|+++|+++++|++|+.+.......... ..+... - .+..++.|.++ ...-+|+++..+
T Consensus 185 ~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~ 263 (409)
T PLN02656 185 VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPM-GVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFR 263 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccH-HHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccc
Confidence 8 578999999999999999999997644321111111 011111 1 34566899855 446799988753
Q ss_pred -chHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 314 -PNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 314 -~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
+.... .+........ ....+...++...+ ..+.+++..+...+.++.+.+.|++
T Consensus 264 ~~~~~~-~~~~~~~~~~---------------------~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~ 321 (409)
T PLN02656 264 DPKIVE-RIKKYFDILG---------------------GPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE 321 (409)
T ss_pred cHHHHH-HHHHHHhhhc---------------------CCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222 2211000000 01223333333333 2345777778888888899999988
Q ss_pred CCCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHH
Q 038818 390 DNRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 390 ~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~di 468 (486)
++++....+|..+.+.| ++...... .. ......+.+.+.+.|+.+.++..+...+++|++++. +++++
T Consensus 322 ~~~~~~~~~p~gg~~~w~~l~~~~~~------~~--~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~---~~e~l 390 (409)
T PLN02656 322 IPCITCPHKPEGSMAVMVKLNLSLLE------DI--SDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA---DPSSL 390 (409)
T ss_pred CCCCcCCcCCCeEEEEEEecchhhcC------CC--CCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC---CHHHH
Confidence 76554334566555444 33211000 00 000122344556678866655555556799999963 57789
Q ss_pred HHHHHHHHHHHHHHh
Q 038818 469 IAAWKVVQEKLDGIL 483 (486)
Q Consensus 469 d~~i~~l~~~~~~l~ 483 (486)
++.++.|++++.+..
T Consensus 391 ~eal~rl~~~~~~~~ 405 (409)
T PLN02656 391 EEALGRIKSFYLRHS 405 (409)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988776543
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-19 Score=180.27 Aligned_cols=299 Identities=13% Similarity=0.099 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+.+++++|.+ ..++.++|++||..++..++.. .++.+|+.+...|.++..+++..
T Consensus 91 ~~~~~l~~~la~~~g~~---------~~~~~~sG~~an~~ai~~l~~~---------~~~~~i~~~~~~h~s~~~~~~~~ 152 (407)
T PRK09064 91 HYHVELERELADLHGKE---------AALVFTSGYVSNDATLSTLAKL---------IPDCVIFSDELNHASMIEGIRRS 152 (407)
T ss_pred HHHHHHHHHHHHHhCCC---------cEEEECcHHHHHHHHHHHHhCC---------CCCCEEEEeCcchHHHHHHHHHc
Confidence 34455666788888853 3467777889998888776532 14667777778899998888888
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|. .+..++. .|+++|++.++... ...+.+|+++.+.+++|.+.|+++|.++|++||++++||+||+.+
T Consensus 153 ~~---~~~~~~~-------~d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G 220 (407)
T PRK09064 153 RC---EKHIFRH-------NDVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVG 220 (407)
T ss_pred CC---cEEEECC-------CCHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCccc
Confidence 87 7666653 37899999886421 123567889999999999999999999999999999999999733
Q ss_pred hccCccchhh--hcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 273 ACICPEFRHF--IDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 273 ~~~~~~~~~~--~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
.+ .+..... ..++ +..|.++.+++|.++.+ | |+++.+ ++..........+|.+. .+
T Consensus 221 ~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~-G-G~~~~~-~~~~~~l~~~~~~~~~t-----------------~~ 279 (407)
T PRK09064 221 MY-GPRGGGIAERDGLMDRIDIIEGTLAKAFGVM-G-GYIAGS-AALVDAVRSYAPGFIFT-----------------TS 279 (407)
T ss_pred cc-CCCCCChHHhcCCCCCCeEEEEecchhhhcc-C-ceEecC-HHHHHHHHHhCcccccc-----------------Cc
Confidence 22 1111111 1122 35688888999998754 2 555543 33332111111222211 11
Q ss_pred CC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 350 RR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 350 r~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
.. ..+.++..++..+... ....++..++++++.+.|++. +++++. +..+++.+.+.. ....
T Consensus 280 ~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~~--------------~~~~ 341 (407)
T PRK09064 280 LPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVGD--------------PEKC 341 (407)
T ss_pred CCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCC--------------HHHH
Confidence 11 1223333444443222 334577888999999999886 777653 445676665532 1224
Q ss_pred HHHHHHHHh-cCcEEEeee----eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 429 RKLLESINA-SGQLYVSHG----MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 429 ~~l~~~l~~-~g~~~~~~~----~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..+.+.|.+ .|++ +.+. ...+..++|+++. ...+++|+++++++|+++++++
T Consensus 342 ~~l~~~L~~~~gi~-v~~~~~p~~~~~~~~lRis~~-~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 342 KKASDMLLEEHGIY-VQPINYPTVPRGTERLRITPT-PFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred HHHHHHHHHhCCEE-EeeECCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 567777764 4764 3332 1224568999984 5778889999999999988765
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-21 Score=188.36 Aligned_cols=288 Identities=17% Similarity=0.175 Sum_probs=186.0
Q ss_pred HHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCC-----------ccccccChhhHHHHHHHHHHHHH
Q 038818 56 ILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVV-----------GFNWMSSPAATELENIVMDWLGE 124 (486)
Q Consensus 56 il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~-----------~~~~~~~~~~~~le~~~~~~l~~ 124 (486)
+++.|.+....+...|+.|.+-+-..-... .++..+..+++.+ ....-..|.....|. .+.+++
T Consensus 3 l~~aL~~y~~~~~~~fh~PGHk~G~~~~~~---p~g~~~~~f~G~~~~~~Dl~te~~~lD~L~~p~G~I~eA--e~~aA~ 77 (417)
T PF01276_consen 3 LFEALKKYAEEGPYSFHMPGHKGGRGFDKS---PAGRLFYDFFGENLFRADLSTEVPGLDDLHDPEGIIKEA--EELAAR 77 (417)
T ss_dssp HHHHHHHHHHTT-EESSSSTTTTTTCGGGS---HHHHHHHHHH-HHHHHT---TTSTTCBBTTTTBTHHHHH--HHHHHH
T ss_pred HHHHHHHHHhCCCceeecCccCCCCCCCcc---hHHHHHHHHHhhHHHHHHHhhcccccCcccCCccHHHHH--HHHHHH
Confidence 456677777778888888866542211122 1222222222111 122223344344444 488999
Q ss_pred HcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEec
Q 038818 125 MLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKT 204 (486)
Q Consensus 125 l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~ 204 (486)
+||.+.+| ++++|+|.+|..++.++.. +++.|+++..+|-|+..++.+.|+ .+++++.
T Consensus 78 ~fGAd~t~--------flvnGsT~g~~a~i~a~~~-----------~gd~VLv~RN~HkSv~~alil~ga---~Pvyi~p 135 (417)
T PF01276_consen 78 AFGADKTF--------FLVNGSTSGNQAMIMALCR-----------PGDKVLVDRNCHKSVYNALILSGA---IPVYIPP 135 (417)
T ss_dssp HHTESEEE--------EESSHHHHHHHHHHHHHTT-----------TTCEEEEETT--HHHHHHHHHHTE---EEEEEEE
T ss_pred hcCCCeEE--------EEecCchHHHHHHHHHhcC-----------CCCEEEEcCCcHHHHHHHHHHcCC---eEEEecC
Confidence 99998864 7889999999888877765 788999999999999999999999 9998876
Q ss_pred CCCC---CcccCH-----HHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 205 TKSS---SFTLTP-----ESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 205 d~~~---~~~~d~-----~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
...+ -+.+++ +.++++|++...... |.+|++|.+| ..|.+-++++|+++|+++|+.|+||+|||+.+.+.
T Consensus 136 ~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~ 213 (417)
T PF01276_consen 136 EDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFH 213 (417)
T ss_dssp EE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCS
T ss_pred CccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccCC
Confidence 5211 134566 999999987643211 4557777765 47999999999999999999999999999988777
Q ss_pred ccchhhhcCCCCCC-------ceeeccccccCCCCcceEEEeeCch-H----HHHHh----cCCcccccCccCCCCCccC
Q 038818 277 PEFRHFIDGIEGAD-------SFSLNAHKWFFTTLDCCCLWVKNPN-A----LIKAL----STNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 277 ~~~~~~~~~~~~aD-------si~~~~hK~l~~p~~~g~~~~~~~~-~----~~~~~----~~~~~y~~~~~~~~~~~~~ 340 (486)
+-.+..+. -++| .++-|.||.+.+-.+++++.+++.. . +.+++ +..|.|+.
T Consensus 214 ~lp~~a~~--~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~l----------- 280 (417)
T PF01276_consen 214 PLPRSALA--LGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPL----------- 280 (417)
T ss_dssp GGGTTCSS--TTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHH-----------
T ss_pred CCccchhh--ccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHH-----------
Confidence 43333221 2789 9999999999999999999999874 2 22222 11222211
Q ss_pred CCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHH---hCCCCeEEecCC
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELV---GGDNRFEIVAPR 399 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L---~~~~~~~~~~~~ 399 (486)
-..+=.+.+.+ +.+| ++++++..++++.++++| ++++.|+++.++
T Consensus 281 -------------mASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~ 329 (417)
T PF01276_consen 281 -------------MASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPE 329 (417)
T ss_dssp -------------HHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-S
T ss_pred -------------HHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCcc
Confidence 01222233334 3344 567788888888999998 778888887654
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=183.06 Aligned_cols=308 Identities=13% Similarity=0.054 Sum_probs=198.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcC-CchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQG-TTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~-ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
++.+.++-+++++.+++++|.+.++ ..++++ |||+|+-.++...... +.+..++..+...|. +.
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~~------~v~~~~gsgT~a~ea~~~nl~~~--------~~~~l~i~~G~fg~r-~~ 96 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDNY------EVLFLQGGATGQFAAVPLNLLAE--------GKVADYIVTGAWSKK-AA 96 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCCchHHHHHHHHhcCCC--------CCeEEEEECCHHHHH-HH
Confidence 4556688889999999999986542 455654 4998886665543221 112334444444443 46
Q ss_pred HHHHHcCCCCCCeEEEecCCCC--CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSS--SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~--~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
+.|+.+|+ +..+..++.. .-..|+++++. ++ .+.+|.++++.|.||...| ++++.+++.++
T Consensus 97 ~~a~~~g~----~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~v~~th~ETstGv~~~-----~l~~~~~~l~i 159 (349)
T TIGR01364 97 KEAKKYGV----VNVVASGKEGNYTKIPDPSTWEI--SE------DAAYVHYCANETIHGVEFR-----ELPDVKNAPLV 159 (349)
T ss_pred HHHHHhCC----cEEEeccccCCCCCCCCHHhcCC--CC------CCCEEEEcCCCCcccEecc-----eecccCCCeEE
Confidence 67777776 3334432111 11456665552 21 2458999999999999876 77777899999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
||++.+.+....+- ...|.+.+++||+++ |.|.|+++++++.+- +.-...+.|..... .....
T Consensus 160 VDavss~g~~~id~--------~~~d~~~~ssqK~lg-P~Glg~l~~s~~~~~-~~~~~~~~~~~~~~-------~~~~~ 222 (349)
T TIGR01364 160 ADMSSNILSRPIDV--------SKFGLIYAGAQKNIG-PAGLTVVIVRKDLLG-RASRITPSMLNYKI-------HAEND 222 (349)
T ss_pred EEccccccCccCCH--------HHccEEEEecccccC-CCceEEEEECHHHHh-hcccCCCCcchHHH-------HHhcC
Confidence 99999877665532 245699999999986 899999999987542 21111111210000 00000
Q ss_pred cccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-C--Ce-eEEEEEeecCCCCCCCC
Q 038818 345 QITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-R--NF-AVVCFRVLPSASGLGDG 418 (486)
Q Consensus 345 ~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~--~~-~~v~f~~~~~~~~~~~~ 418 (486)
...++-. ....++..+++.+-.+ |++++.++..++++++++.|++++++..... + .+ .+++|.+.+.
T Consensus 223 ~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~------- 295 (349)
T TIGR01364 223 SMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE------- 295 (349)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh-------
Confidence 0011111 1235666777877777 7999999999999999999999988765532 1 23 4577876532
Q ss_pred CCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 419 KANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+..++.+.+.++|. ++..... ..+.+|+|++ +.+|++|||+++++|+++.++
T Consensus 296 -------~~~~~~~~~~~~~Gi-~~~~~~~-~~g~vRvS~~-~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 296 -------ELEKRFLKEAEERGL-VSLKGHR-SVGGMRASIY-NAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred -------hHhHHHHHHHHHCCC-cccCCcc-ccCeeEEECc-CCCCHHHHHHHHHHHHHHHHh
Confidence 123456667778898 5544322 2357999996 577888999999999987653
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=181.29 Aligned_cols=326 Identities=13% Similarity=0.092 Sum_probs=213.6
Q ss_pred HHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC
Q 038818 91 GEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI 170 (486)
Q Consensus 91 ~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~ 170 (486)
.+.+...+......|...+....+.+.+.+|+.+.+|.+.+. ....++|+|+++|+..++.+..+
T Consensus 39 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~----~~~i~~t~G~~~al~~~~~~l~~----------- 103 (378)
T PRK07682 39 REASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDP----NDEIIVTVGASQALDVAMRAIIN----------- 103 (378)
T ss_pred HHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCChHHHHHHHHHHhCC-----------
Confidence 333433333333446556677899999999999988874221 01589999999998776655433
Q ss_pred CCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC---
Q 038818 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD--- 247 (486)
Q Consensus 171 ~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id--- 247 (486)
+++.|+++..+|..+...++..|. +++.++++.++++.+|+++|++++.+. +.+|+++.++|+||.+-
T Consensus 104 ~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~ 174 (378)
T PRK07682 104 PGDEVLIVEPSFVSYAPLVTLAGG---VPVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKS 174 (378)
T ss_pred CCCEEEEeCCCchhhHHHHHHcCC---EEEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHH
Confidence 567788899999998889999998 899999865446799999999988653 34677788999999985
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCccchh--hhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRH--FIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~--~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~ 324 (486)
.+++|+++|++|++++++|.+|+.+... +.... .+.+...-..+..++.|.++.| ..+|+++..++ ... .+...
T Consensus 175 ~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~-~i~-~l~~~ 251 (378)
T PRK07682 175 ELEEIAVIVEKHDLIVLSDEIYAELTYD-EAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVY-FSE-AMLKI 251 (378)
T ss_pred HHHHHHHHHHHcCcEEEEehhhhhcccC-CCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHH-HHH-HHHHH
Confidence 4889999999999999999999765431 11111 1111112235677789999844 45888877543 322 22111
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
..+.. .....+...++...+ |...+++..++..+.++++.+.|+++ ++++. +|+.+
T Consensus 252 ~~~~~--------------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~p~g~ 309 (378)
T PRK07682 252 HQYSM--------------------MCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCH-VPGGA 309 (378)
T ss_pred HHhhc--------------------cCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCee
Confidence 00100 001223333333333 34556777788888999999999987 77754 45555
Q ss_pred EEEEE-eecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 403 VVCFR-VLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 403 ~v~f~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+.|. +.+.. . + ...+.+.+. ++|+.+..+..+. +..++|++++. +++++++.++.|+++
T Consensus 310 ~~~~~~~~~~~---------~--~--~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~---~~~~l~~~l~~l~~~ 373 (378)
T PRK07682 310 FYAFPSISSTG---------L--S--SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT---SLEQLQEAMKRMKRF 373 (378)
T ss_pred EEEEEeccCCC---------C--C--HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC---CHHHHHHHHHHHHHH
Confidence 55553 32211 0 1 234566654 5677544443332 35799999963 477999999999988
Q ss_pred HHH
Q 038818 479 LDG 481 (486)
Q Consensus 479 ~~~ 481 (486)
+++
T Consensus 374 l~~ 376 (378)
T PRK07682 374 VEN 376 (378)
T ss_pred Hhh
Confidence 765
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=163.16 Aligned_cols=345 Identities=11% Similarity=0.069 Sum_probs=234.3
Q ss_pred eecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHH
Q 038818 78 AYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAA 157 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a 157 (486)
=+.|++.+.+..+. .+.+.+... ..+|.+.++.+++.+-+...|...... --++.++|+.+.-.|+...
T Consensus 20 L~gPGPsnl~~~V~----~A~~~~~lg-h~sPe~~qIm~~v~egikyVFkT~n~~------tf~isgsGh~g~E~al~N~ 88 (385)
T KOG2862|consen 20 LLGPGPSNLSGRVQ----EAMSRPSLG-HMSPEFVQIMDEVLEGIKYVFKTANAQ------TFVISGSGHSGWEAALVNL 88 (385)
T ss_pred eecCCCcCCCHHHH----HhhcCCccc-cCCHHHHHHHHHHHHHHHHHhccCCCc------eEEEecCCcchHHHHHHhh
Confidence 45567666665443 345554443 367999999999999999999875542 3466777777766665554
Q ss_pred HHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEE
Q 038818 158 RDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLC 235 (486)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv 235 (486)
.+ |++.+++-...-.+ +...++.+|+ +|..|+.+..+ ...++.+++.|...+ |.+|+
T Consensus 89 le-----------Pgd~vLv~~~G~wg~ra~D~~~r~ga---~V~~v~~~~G~--~~~le~i~~~lsqh~-----p~~vf 147 (385)
T KOG2862|consen 89 LE-----------PGDNVLVVSTGTWGQRAADCARRYGA---EVDVVEADIGQ--AVPLEEITEKLSQHK-----PKAVF 147 (385)
T ss_pred cC-----------CCCeEEEEEechHHHHHHHHHHhhCc---eeeEEecCccc--CccHHHHHHHHHhcC-----CceEE
Confidence 44 56666666566555 5566788999 99999888643 889999999998753 77999
Q ss_pred eecCCccccccCC-chHHHHHHHHhCceEEeeccccchhc--cCccchhhhcCCCCCCceeeccccccCCCCcceEEEee
Q 038818 236 ATVGTTAITTVDP-LGPLCDIAKRYSIWVHVDAAYAGSAC--ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK 312 (486)
Q Consensus 236 ~~~gtt~~G~idp-l~~I~~i~~~~g~~lhvD~a~g~~~~--~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~ 312 (486)
++++.|.||.++| ++.+.++|++|++.|.||+.-+.+.. ..+++ ++|..-...+|.+++|.|.+++.+.
T Consensus 148 v~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDew--------gVDvaytgSQKaL~aP~GLsiisfS 219 (385)
T KOG2862|consen 148 VTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEW--------GVDVAYTGSQKALGAPAGLSIISFS 219 (385)
T ss_pred EEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhh--------cccEEEecchhhcCCCCCcceeecC
Confidence 9999999999999 78889999999999999986543332 23333 8999999999999999999998887
Q ss_pred CchHHHHHhcC---CcccccCccCCCCCccCCCCccccCCCCC------CchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 038818 313 NPNALIKALST---NPEFLRNKASDSKQVVDYKDWQITLSRRF------RALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 313 ~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~sr~~------~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l 383 (486)
++..- +.... ...|.++.. ...+++...-+..+.. ....+-.+|..+.++|+++.++++.++++++
T Consensus 220 ~ka~~-~~~~rK~~~~~~yFd~~----~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l 294 (385)
T KOG2862|consen 220 DKALE-AIRDRKTKPVSFYFDIL----RLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWL 294 (385)
T ss_pred HHHHH-HHhhccCCceEEEEeHH----hhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76442 22211 122222210 0011111111111111 1134556777788999999999999999999
Q ss_pred HHHHhCCCCeEEecC---CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-ECCEeEEEEEec
Q 038818 384 QELVGGDNRFEIVAP---RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-VAGIYFIRFAVG 459 (486)
Q Consensus 384 ~~~L~~~~~~~~~~~---~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~lR~~~~ 459 (486)
+..|+++ |+++... ..++.+.-.-.|... .-+.+...+..++.+.+++.- .-...++||.++
T Consensus 295 ~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gv-------------Dw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~ 360 (385)
T KOG2862|consen 295 KLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGV-------------DWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLL 360 (385)
T ss_pred HHHHHHh-CccceecChhhccCcceeeecCCCC-------------CHHHHHHHHHHhcCEEeccccCCCcccEEEEEEe
Confidence 9999997 7876542 233443332223221 123556666677765555431 112558999998
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~ 481 (486)
.-+.+.+.|++.++.|+..+++
T Consensus 361 gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 361 GCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred eccCCcHHHHHHHHHHHHHHhh
Confidence 8888888999999999887754
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-18 Score=174.63 Aligned_cols=308 Identities=11% Similarity=0.059 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
..++.+.+++++|.++ .+++++|+.++..++.+... +++.|++++..|.|+..++...+.
T Consensus 45 ~~~LE~~lA~~~g~e~---------al~~~sG~~a~~~~i~~l~~-----------~GD~Vl~~~~~h~s~~~~~~l~~~ 104 (392)
T PLN03227 45 HLELEQCMAEFLGTES---------AILYSDGASTTSSTVAAFAK-----------RGDLLVVDRGVNEALLVGVSLSRA 104 (392)
T ss_pred HHHHHHHHHHHhCCCc---------EEEecCcHHHHHHHHHHhCC-----------CCCEEEEeccccHHHHHHHHHcCC
Confidence 3445566888888763 47777778888766655432 788899999999999998888877
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHH--------CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ--------AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~--------~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
+++.++.+ |++++++.++.... ....+.+|++...++++|.+.|+++|.++|++||+++++|
T Consensus 105 ---~~~~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livD 174 (392)
T PLN03227 105 ---NVRWFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILD 174 (392)
T ss_pred ---eEEEeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 77777643 55666665543221 1123567888889999999999999999999999999999
Q ss_pred ccccchhccCccchhh-----hcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccC
Q 038818 267 AAYAGSACICPEFRHF-----IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVD 340 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~-----~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~ 340 (486)
++|+.+.. .+..+.. +....++|.++.+.+|.++ |. .|++..+ ++... .+.. ...+.++
T Consensus 175 e~~~~g~~-g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~-gg~v~~~-~~~~~-~~~~~~~~~~~~---------- 239 (392)
T PLN03227 175 ESFSFGTL-GKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SV-GGMTVGS-EEVVD-HQRLSGSGYCFS---------- 239 (392)
T ss_pred Cccccccc-CCCCCcHHHHcCCCCCCCceEEEeechhhhh-cc-CcEEecC-HHHHH-HHHHhCcCcccc----------
Confidence 99973322 1111111 1112468999999999876 32 3444444 33221 2211 1111111
Q ss_pred CCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeE----------EecCCCeeEEEEEee
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFE----------IVAPRNFAVVCFRVL 409 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~----------~~~~~~~~~v~f~~~ 409 (486)
. ...++.+|+++..+ .....+++.++..+++++|++.|++. ++. +...+.++++.+.+.
T Consensus 240 -------~--~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~ 309 (392)
T PLN03227 240 -------A--SAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLS 309 (392)
T ss_pred -------C--CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEEEEeC
Confidence 1 11123334444322 11123467888899999999999752 222 122345677888775
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-------eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHG-------MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.... ..........++.+.+.++|++..... ..-....+|++++ ...|++|||++++.|+++++++
T Consensus 310 ~~~~~-----~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~-~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 310 DQEAT-----RRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVAN-ASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred CHHHh-----hhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEec-CCCCHHHHHHHHHHHHHHHHHH
Confidence 32100 000001233577888888998543211 1123467999995 5777779999999999998776
Q ss_pred h
Q 038818 483 L 483 (486)
Q Consensus 483 ~ 483 (486)
.
T Consensus 384 ~ 384 (392)
T PLN03227 384 L 384 (392)
T ss_pred H
Confidence 4
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=180.60 Aligned_cols=338 Identities=10% Similarity=0.062 Sum_probs=214.7
Q ss_pred HHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 90 LGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 90 ~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
+.+.+...+..+ ...|.......++.+.+.+++.+..|.+-+ ...+++|+|+++|+..++.+..+
T Consensus 74 ~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~-----~~~v~it~G~~~al~l~~~~l~~--------- 139 (430)
T PLN00145 74 AEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELS-----TDDIYLTAGCAQAIEIIMSVLAQ--------- 139 (430)
T ss_pred HHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCC-----hhhEEEeCCHHHHHHHHHHHhcC---------
Confidence 344444444322 235555556778888888888877766432 13789999999998877666532
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
+++.|+++..++..+...+...|+ +++.+++.+..+|.+|+++|++++++.+ .+++++.++|+||.+-|
T Consensus 140 --~Gd~Vlv~~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~P~NPtG~v~~ 208 (430)
T PLN00145 140 --PGANILLPRPGYPLYEARAVFSGL---EVRHFDLLPERGWEVDLEGVEALADENT------VAMVIINPNNPCGSVYS 208 (430)
T ss_pred --CCCEEEEcCCCCccHHHHHHHcCC---EEEEeeCCcccCCcCCHHHHHHHhCcCc------eEEEEeCCCCCCCCCCC
Confidence 667788899999888888999999 9999987654568999999999886643 37888889999999987
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCC-CC-ceeeccccccCCC-CcceEEEeeCch-HHHHH-
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEG-AD-SFSLNAHKWFFTT-LDCCCLWVKNPN-ALIKA- 320 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~-aD-si~~~~hK~l~~p-~~~g~~~~~~~~-~~~~~- 320 (486)
+++|+++|+++|+++++|++|..+......+... ..+.. .. .+..+..|.+..| .-+|+++..++. .+...
T Consensus 209 ~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~-~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~ 287 (430)
T PLN00145 209 YEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPM-GVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETK 287 (430)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccch-hhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhH
Confidence 8889999999999999999997643211111111 11111 12 3345578996544 578998875432 11100
Q ss_pred -hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 321 -LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 321 -~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
......+.. .+-....+..++....+ ..+.+++..+...+.++.+.+.|++++++.+.
T Consensus 288 ~~~~~~~~~~------------------~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~ 349 (430)
T PLN00145 288 VVDSIRNYLN------------------ISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCP 349 (430)
T ss_pred HHHHHHHHhc------------------ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 000000100 00001122223332333 23567788888888999999999998888765
Q ss_pred cCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 397 APRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 397 ~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
..|+..++.| ++..... .... ....+..++. +.|+++..+..+...+++|+++. .+++++++.++.
T Consensus 350 ~~P~ga~y~~v~l~~~~~--------~~~~-~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~---~~~~~l~~al~r 417 (430)
T PLN00145 350 HKPEGSMFVMVKLDLSCL--------SGIK-DDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA---IDPPSLEDGLER 417 (430)
T ss_pred cCCCeeeEEEeccChhhc--------CCCC-CHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC---CCHHHHHHHHHH
Confidence 4455554443 3432100 0000 0123444443 55776555555555789999995 257789999999
Q ss_pred HHHHHHHHh
Q 038818 475 VQEKLDGIL 483 (486)
Q Consensus 475 l~~~~~~l~ 483 (486)
|.+.+++-.
T Consensus 418 l~~~~~~~~ 426 (430)
T PLN00145 418 LKSFCLRHA 426 (430)
T ss_pred HHHHHHHhc
Confidence 988876544
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=183.35 Aligned_cols=310 Identities=13% Similarity=0.023 Sum_probs=195.8
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEc-CCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQ-GTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t-~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 184 (486)
..++.+.++-+++++.+++++|.++++ ..+|+ +|||.++..++..... ++ .++++.-.|.+
T Consensus 34 hr~~~f~~~~~~~r~~l~~l~~~~~~~------~v~f~~gs~T~a~~~~~~~l~~-----------~~-~l~i~~G~~~~ 95 (361)
T TIGR01366 34 HRQAPVKNLVGRVREGLAELFSLPDGY------EVILGNGGATAFWDAATFGLIE-----------KK-SLHLSFGEFSS 95 (361)
T ss_pred cCChHHHHHHHHHHHHHHHHhCCCCCc------eEEEECCchhHHHHHHHHhccc-----------cc-ccEEecCHHHH
Confidence 345677888889999999999996542 56664 6699888766654421 12 22233334433
Q ss_pred -HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 185 -LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 185 -~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
+.+.+....... ++..+++++.+ .++. .+.+ .+.+|++++++|.+|.+.|+++| ++++|+++
T Consensus 96 ~~~~~a~~~~~~~-~~~~~~~~~~~--~~~~-----~~~~------~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~ 158 (361)
T TIGR01366 96 KFAKAVKLAPWLG-EPIIVTADPGS--APEP-----QADP------GVDVIAWAHNETSTGVAVPVRRP---EGSDDALV 158 (361)
T ss_pred HHHHHHHhhhccC-CceEEecCCCC--CCCC-----ccCC------CCCEEEEcccCCccceecccccc---cccCCCeE
Confidence 455555532211 56777766422 3333 2222 24589999999999999999998 58999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCC------cccccCccCCCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTN------PEFLRNKASDSKQ 337 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~------~~y~~~~~~~~~~ 337 (486)
+||++++.+....+- +.+|.+++++||++++|.|.++++++++.. .+..... +.|+....
T Consensus 159 iVDavqs~g~~~idv--------~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~-~~~~~~~~~~~~~p~~~d~~~----- 224 (361)
T TIGR01366 159 VIDATSGAGGLPVDI--------AETDVYYFAPQKNFASDGGLWLAIMSPAAL-ERIEAIAASGRWVPEFLSLPT----- 224 (361)
T ss_pred EEEcCccccCCCCCH--------HHCCEEEEEchhhcCCCCceEEEEECHHHH-hhhhcccCCCCCCchhhhHHH-----
Confidence 999999887765541 248999999999999998877777777643 2221110 11211100
Q ss_pred ccCCCCccccCCCCC--C---chHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-C--CeeE-EEEE
Q 038818 338 VVDYKDWQITLSRRF--R---ALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-R--NFAV-VCFR 407 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~--~---~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~--~~~~-v~f~ 407 (486)
......+.+... . .+++..+++.+-.+ |++.+.++..++++++++.|.+.+.++++.. + .++. .++.
T Consensus 225 ---~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~ 301 (361)
T TIGR01366 225 ---AVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTID 301 (361)
T ss_pred ---HHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEE
Confidence 000001111111 1 13556677777666 6888899999999999999999976776532 2 1222 2344
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+. .+ .....+.+.|.++|+....+...-+...+|+++++ ++|++||++++++|++++++|
T Consensus 302 ~~-~g-------------~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~-~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 302 FV-DD-------------IDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFP-AIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred CC-Cc-------------cCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCC-CCCHHHHHHHHHHHHHHHhhC
Confidence 42 21 11235666676678754322211124579999975 778889999999999988764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-19 Score=176.75 Aligned_cols=333 Identities=14% Similarity=0.096 Sum_probs=212.3
Q ss_pred HHHHHHHHHhhcC-CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFN-VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+.+.+...+. .....|....+...+.+.+.+++++.+|.+... ....++|+|+++++..++.....
T Consensus 42 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~----~~~i~~t~G~~~~l~~~~~~~~~------ 111 (389)
T PRK05957 42 PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNN----EQAIVVTAGSNMAFMNAILAITD------ 111 (389)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCeEEEeCChHHHHHHHHHHhcC------
Confidence 3344555555443 222356555566788889999999999974210 02688999998888766655432
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++...|......++..|+ +++.+|.+. ++.+|+++|++++++. +.+|+++.++|+||.
T Consensus 112 -----~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~------~klv~~~~p~NPtG~ 175 (389)
T PRK05957 112 -----PGDEIILNTPYYFNHEMAITMAGC---QPILVPTDD--NYQLQPEAIEQAITPK------TRAIVTISPNNPTGV 175 (389)
T ss_pred -----CCCEEEEeCCCCcCHHHHHHhcCC---EEEEeecCC--CCCcCHHHHHHhcCcC------ceEEEEeCCCCCCCc
Confidence 567788888888777777888899 999999874 5789999999998653 347788889999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhc--CCCCCCceeeccccccCCC-CcceEEEeeCchHHHH
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID--GIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIK 319 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~--~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~ 319 (486)
+-| +++|+++|++||+++++|++|+.+............ ....-..+..+..|.++.| .-+|+++..++ ...
T Consensus 176 ~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~-~~~- 253 (389)
T PRK05957 176 VYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIH-LLE- 253 (389)
T ss_pred CcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHH-HHH-
Confidence 977 899999999999999999999755332111111111 1111124456678988644 35888887543 322
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
.+.....+... ....+....+...+ +.+.+++..++..++++++.+.|++++++..+.
T Consensus 254 ~~~~~~~~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 313 (389)
T PRK05957 254 AIKKIQDTILI--------------------CPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLH 313 (389)
T ss_pred HHHHHHhhccc--------------------CCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 22111000000 01122333333333 344567777888888999999998877642234
Q ss_pred CCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHH
Q 038818 398 PRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 398 ~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
++..+.+++ ++.+.. + ..++.+.+. +.|+.+.++..+. +.+++|+++.. .+++++++.++
T Consensus 314 ~~~gg~~~~~~~~~~~------------~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~~l~~~~~ 377 (389)
T PRK05957 314 PANGAFYCFLKVNTDL------------N--DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA--LQKATAKEGIE 377 (389)
T ss_pred CCCeeEEEEEeCCCCC------------C--hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec--CCHHHHHHHHH
Confidence 566555443 443210 1 235666665 4677554443332 24689999953 35668888888
Q ss_pred HHHHHHHHHh
Q 038818 474 VVQEKLDGIL 483 (486)
Q Consensus 474 ~l~~~~~~l~ 483 (486)
.|.+.++++.
T Consensus 378 ~l~~~~~~~~ 387 (389)
T PRK05957 378 RLVQGLKTIV 387 (389)
T ss_pred HHHHHHHhhh
Confidence 8888877654
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-19 Score=177.61 Aligned_cols=326 Identities=11% Similarity=0.047 Sum_probs=208.9
Q ss_pred HHHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+.+.+...++.. ...|. .++...+.+.+.+|+.+..|.+.+. ....++|+|+++++..++.+...
T Consensus 47 ~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~----~~~I~it~G~~~al~~~~~~~~~------ 115 (399)
T PRK07681 47 ADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNA----DKEVLLLMGSQDGLVHLPMVYAN------ 115 (399)
T ss_pred CHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCC----CCeEEECCCcHHHHHHHHHHhCC------
Confidence 344566665555432 22232 2456788888999999888864320 02688999999988766555433
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..+|..+...++.+|+ +++.+|+++++.+.+|+++|++++.+. +.+|+++.++||||.
T Consensus 116 -----~Gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~ 181 (399)
T PRK07681 116 -----PGDIILVPDPGYTAYETGIQMAGA---TSYYMPLKKENDFLPDLELIPEEIADK------AKMMILNFPGNPVPA 181 (399)
T ss_pred -----CCCEEEECCCCccchHHHHHhcCC---EEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCcCc
Confidence 677888999999999999999999 999999986555789999999888643 347888889999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC---CCCceeeccccccC-CCCcceEEEeeCchHHH
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE---GADSFSLNAHKWFF-TTLDCCCLWVKNPNALI 318 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~---~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~ 318 (486)
+-+ +++|+++|++||+|+++|.+|+.+........... .+. .-..+..++.|.++ ...-+|+++.. +....
T Consensus 182 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~-~~l~~ 259 (399)
T PRK07681 182 MAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFL-SVPGAKEVGVEINSLSKSYSLAGSRIGYMIGN-EEIVR 259 (399)
T ss_pred CCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChh-hCCCCcccEEEEeecccccCCccceeEEEecC-HHHHH
Confidence 976 78899999999999999999976543211111111 111 12244567899997 44568888753 43332
Q ss_pred HHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 319 KALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 319 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.+.....+... ....+..+++...+ +.+.+++..+...++.+++.+.|++. ++++.
T Consensus 260 -~~~~~~~~~~~--------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 317 (399)
T PRK07681 260 -ALTQFKSNTDY--------------------GVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWNVD 317 (399)
T ss_pred -HHHHHHhhccc--------------------CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 22111000000 01122223333333 33456666777778888899999887 77765
Q ss_pred cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHH
Q 038818 397 APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 397 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
.+.....+.+++.+.. ...++.+.+.+ .|+.+.++..+. +.+++|+++. .++++++++++
T Consensus 318 ~p~~g~f~~~~l~~~~--------------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~---~~~~~~~~~l~ 380 (399)
T PRK07681 318 KPAGSMFVWAEIPKGW--------------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV---QDEEVLQQAVE 380 (399)
T ss_pred CCCeeeEEEEECCCCC--------------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec---CCHHHHHHHHH
Confidence 4443334444443210 12345666655 677544443332 3468999996 25679999999
Q ss_pred HHHHH
Q 038818 474 VVQEK 478 (486)
Q Consensus 474 ~l~~~ 478 (486)
.|++.
T Consensus 381 ~l~~~ 385 (399)
T PRK07681 381 NIRNS 385 (399)
T ss_pred HHHHh
Confidence 99884
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=173.36 Aligned_cols=333 Identities=17% Similarity=0.131 Sum_probs=218.0
Q ss_pred HHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC
Q 038818 91 GEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI 170 (486)
Q Consensus 91 ~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~ 170 (486)
.+.+...+..+- ...||...++|++ +++.+|.+. ++.+++||.|+..||.+.--.
T Consensus 18 ~~~v~~vl~sg~--i~~G~~v~~FE~~----~ae~~G~k~---------ava~~sgT~AL~laL~al~ig---------- 72 (374)
T COG0399 18 LAAVQEVLKSGW--LTGGPFVRRFEQA----FAEYLGVKY---------AVAVSSGTAALHLALLALAIG---------- 72 (374)
T ss_pred HHHHHHHHHcCC--eecChHHHHHHHH----HHHHhCCCe---------EEEecChHHHHHHHHHhcCCC----------
Confidence 344444554432 2347888888864 778888764 588999999999988854311
Q ss_pred CCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCch
Q 038818 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLG 250 (486)
Q Consensus 171 ~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~ 250 (486)
+++.|+++..+..+-..++-+.|. ++++|++|++ ++.||++.||++|.+.++ .|+.++ ..|...+++
T Consensus 73 ~GDeVI~ps~TfvATan~i~~~Ga---~PVFvDid~~-T~nid~~~ie~aIt~~tK------AIipVh---l~G~~~dm~ 139 (374)
T COG0399 73 PGDEVIVPSFTFVATANAVLLVGA---KPVFVDIDPD-TLNIDPDLIEAAITPRTK------AIIPVH---LAGQPCDMD 139 (374)
T ss_pred CCCEEEecCCchHHHHHHHHHcCC---eEEEEecCCc-ccCCCHHHHHHHcccCCe------EEEEeh---hccCCCCHH
Confidence 788999999999999999999999 9999999974 689999999999998754 566554 478889999
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+|.+||++||++++.|+|++.+...-.+. .-.+..+-+++|.+.|.+.+. ..|+++++|++...+.......-...
T Consensus 140 ~i~~la~~~~l~vIEDaAqa~Ga~y~gk~---vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~ 215 (374)
T COG0399 140 AIMALAKRHGLPVIEDAAQAHGATYKGKK---VGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSR 215 (374)
T ss_pred HHHHHHHHcCCeEEEEcchhccCeecCcc---cccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCC
Confidence 99999999999999999997765432221 112335667888899999876 78888888887765433211100000
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeec
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~ 410 (486)
. ..+.+ +....|-..+--.+-+++.....+.++++.++..++++++.+.|++++++.+..++....-.+....
T Consensus 216 ~-----~~~~y--~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~ 288 (374)
T COG0399 216 D-----AVFKY--LHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYT 288 (374)
T ss_pred C-----ccccc--eeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeE
Confidence 0 00011 1122222222222233333333478899999999999999999999987766544433222222221
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHhcCcE---EEeeee---------------E-----CCEeEEEEEecCCCCcHHH
Q 038818 411 SASGLGDGKANEGANELNRKLLESINASGQL---YVSHGM---------------V-----AGIYFIRFAVGATLTEDRH 467 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~---------------~-----~~~~~lR~~~~~~~tt~~d 467 (486)
...+ .+ ......+.+.|.+.|+. +..|.. + .....+.+= ++|..+++|
T Consensus 289 i~~~------~~--~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP-~~p~l~~~~ 359 (374)
T COG0399 289 ILVD------EE--GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLP-LHPNLSEED 359 (374)
T ss_pred EEec------CC--CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEcc-CCCCCCHHH
Confidence 1100 00 11234567777777653 111100 0 012345544 479999999
Q ss_pred HHHHHHHHHHHHHH
Q 038818 468 VIAAWKVVQEKLDG 481 (486)
Q Consensus 468 id~~i~~l~~~~~~ 481 (486)
+++++++|+++...
T Consensus 360 ~~~V~~~l~~~~~~ 373 (374)
T COG0399 360 VDRVIEALKEVLGS 373 (374)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-19 Score=178.94 Aligned_cols=329 Identities=13% Similarity=0.109 Sum_probs=216.5
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
+..+.+.+...+......|....+..++.+.+.+++.+.+|.+-+. ....++|+|+++|+..++.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~----~~~I~vt~G~~~al~~~~~~l~~------- 137 (413)
T PLN00175 69 PDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP----EKEVTVTSGCTEAIAATILGLIN------- 137 (413)
T ss_pred CHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCCEEEeCCHHHHHHHHHHHhCC-------
Confidence 3445566555554433567666677899999999999988864321 01588899999988766665432
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|++.+..|..+...++..|. +++.+|++++ ++.+|+++|++++.+.+ .+|+++.++|++|.+
T Consensus 138 ----~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~-~~~~~~~~l~~~~~~~~------k~i~i~~p~NPtG~~ 203 (413)
T PLN00175 138 ----PGDEVILFAPFYDSYEATLSMAGA---KIKTVTLRPP-DFAVPEDELKAAFTSKT------RAILINTPHNPTGKM 203 (413)
T ss_pred ----CCCEEEEeCCCchhHHHHHHHcCC---EEEEEECCcc-cCCCCHHHHHHhcCcCc------eEEEecCCCCCCCcC
Confidence 677788888999999999999999 9999999753 47999999999886533 467888999999998
Q ss_pred C---CchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCC-CCcceEEEeeCchHHHHH
Q 038818 247 D---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFT-TLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 d---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~~~~ 320 (486)
- ++++|+++|++||+|+++|++|.....- +..... +.+...-..+..++.|.++. ..-+|+++..++ ....
T Consensus 204 ~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~-~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~-l~~~- 280 (413)
T PLN00175 204 FTREELELIASLCKENDVLAFTDEVYDKLAFE-GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTWG- 280 (413)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEecccCccccC-CcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHH-HHHH-
Confidence 5 5788999999999999999999765431 111111 11111223456778999984 456788776543 3221
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
+.....+.. .....+..+++.+.+ +...+++..++..+.++.+.+.|++. ++++. +
T Consensus 281 l~~~~~~~~--------------------~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~ 338 (413)
T PLN00175 281 VRQAHSFLT--------------------FATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFKVY-P 338 (413)
T ss_pred HHHHHhhcc--------------------CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-C
Confidence 111100100 011222333333333 34557777888888999999999887 78765 4
Q ss_pred CCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC-----CEeEEEEEecCCCCcHHHHHHH
Q 038818 399 RNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA-----GIYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 399 ~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~-----~~~~lR~~~~~~~tt~~did~~ 471 (486)
|..+.+.| ++.+... . ...++.+.+. ++|+.+.++..+. +..++|++++. +++++++.
T Consensus 339 p~g~~f~~~~~~~~~~--------~----~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~---~~e~l~~~ 403 (413)
T PLN00175 339 SSGTYFVMVDHTPFGF--------E----NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK---DEETLRAA 403 (413)
T ss_pred CCeeEEEEEeccccCC--------C----CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC---CHHHHHHH
Confidence 55554433 4332110 0 1235666665 4587666554431 35689999952 57799999
Q ss_pred HHHHHHHHH
Q 038818 472 WKVVQEKLD 480 (486)
Q Consensus 472 i~~l~~~~~ 480 (486)
++.|.++++
T Consensus 404 ~~rL~~~~~ 412 (413)
T PLN00175 404 VERMKTKLK 412 (413)
T ss_pred HHHHHHHHh
Confidence 999988764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-18 Score=176.77 Aligned_cols=336 Identities=12% Similarity=0.106 Sum_probs=218.0
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|..+.+..++.+.+.+|+.+..|++.+ ..++++|+|+++++..++.+.... +++.|+++...
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~-----pe~I~iT~Ga~~ai~~~~~~l~~~----------~gd~Vli~~P~ 225 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDGFPAD-----PNDIFLTDGASPAVHMMMQLLIRS----------EKDGILCPIPQ 225 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccCCCCC-----cccEEEeCCHHHHHHHHHHHhccC----------CCCEEEEeCCC
Confidence 356777778889999999999998887543 137999999999988777765431 46778889999
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC---CchHHHHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD---PLGPLCDIAKR 258 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id---pl~~I~~i~~~ 258 (486)
+.....+++..|. +++.++++++++|.+|+++|++++++...++..+.+++++.++||||.+- .+++|+++|++
T Consensus 226 Y~~y~~~~~~~g~---~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~ 302 (534)
T PLN02231 226 YPLYSASIALHGG---TLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQ 302 (534)
T ss_pred ChhHHHHHHHcCC---EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999 99999998755689999999999987655554566777889999999984 57889999999
Q ss_pred hCceEEeeccccchhccC-cc---chhhhc--CC--CCCCceee-ccccccC--CCCcceEEEee--CchHHHHHhcCCc
Q 038818 259 YSIWVHVDAAYAGSACIC-PE---FRHFID--GI--EGADSFSL-NAHKWFF--TTLDCCCLWVK--NPNALIKALSTNP 325 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~-~~---~~~~~~--~~--~~aDsi~~-~~hK~l~--~p~~~g~~~~~--~~~~~~~~~~~~~ 325 (486)
||+++++|.+|....+.. .. +..... +. .....+++ +..|.++ +..-+|++.+. +++..........
T Consensus 303 ~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~ 382 (534)
T PLN02231 303 EGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS 382 (534)
T ss_pred cCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh
Confidence 999999999997654311 11 111111 11 01124444 7899653 45678888763 3443332211110
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-----chHHH-------HHHHHHHHHHHHHHHHHHhCCCCe
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-----GVANL-------RNFLRSHVRMAQLFQELVGGDNRF 393 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-----g~~g~-------~~~~~~~~~~a~~l~~~L~~~~~~ 393 (486)
.. .|+ ..+...++...+ |...+ .++.+...+.++.+.+.|++++++
T Consensus 383 --~~-----------------~~s---~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi 440 (534)
T PLN02231 383 --VN-----------------LCS---NISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGV 440 (534)
T ss_pred --hh-----------------cCC---ChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 00 011 111122222222 11222 234566778888999999998888
Q ss_pred EEecCCCeeEEEE-Eee-cCCCCCCCCCCccchH-HHHHHHHHHHH-hcCcEEEeeeeEC---CEeEEEEEecCCCCcHH
Q 038818 394 EIVAPRNFAVVCF-RVL-PSASGLGDGKANEGAN-ELNRKLLESIN-ASGQLYVSHGMVA---GIYFIRFAVGATLTEDR 466 (486)
Q Consensus 394 ~~~~~~~~~~v~f-~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~g~~~~~~~~~~---~~~~lR~~~~~~~tt~~ 466 (486)
++. +|+.+++.| ++. +... .+ ..+..+ .....+...+. +.|+.++++..+. +..++|+++. ++++
T Consensus 441 ~~~-~p~Ggfylw~~l~lp~~~--~~--~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~---~~~e 512 (534)
T PLN02231 441 TCN-KAEGAMYLFPRIHLPQKA--IK--AAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTIL---PQED 512 (534)
T ss_pred eec-CCCeeeEEeccccCcHHH--HH--HHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeC---CCHH
Confidence 865 667777777 332 1100 00 000000 00123344444 5687666655553 3457999983 4778
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 038818 467 HVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 467 did~~i~~l~~~~~~l~~~ 485 (486)
+++..++.|.+..++++++
T Consensus 513 ~l~eal~RL~~~~~~~~~~ 531 (534)
T PLN02231 513 KIPAIVSRLTEFHKSFMDE 531 (534)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887653
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=176.04 Aligned_cols=340 Identities=12% Similarity=0.082 Sum_probs=207.0
Q ss_pred CCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 70 HWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 70 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
.+.+..|+|.... +.....+.+.+..+ +.+...............++.+.+++++|.+ ..+++++|++|
T Consensus 49 ~~~sn~ylgl~~~-p~v~~a~~~~~~~~-~~~~~~s~~~~~~~~~~~~le~~la~~~g~~---------~~~~~~SG~~A 117 (406)
T PRK13393 49 VWCSNDYLGMGQH-PAVLAAMHEALDTC-GAGAGGTRNISGTNHYHVLLEAELADLHGKE---------AALLFTSGYVS 117 (406)
T ss_pred EeecccccCCCCC-HHHHHHHHHHHHHc-CCCCcccccccCChHHHHHHHHHHHHHhCCC---------cEEEeCCcHHH
Confidence 3456678887543 23333344444432 2111111110112334556667888888864 35677777889
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
|..++...... .++.+|+++...|.++..+++..|. +++.++. .|++++++.++... ..
T Consensus 118 n~~ai~~l~~~---------~~g~~I~~~~~~H~s~~~~~~~~g~---~~~~~~~-------~d~~~l~~~l~~~~--~~ 176 (406)
T PRK13393 118 NWAALSTLGSR---------LPGCVILSDELNHASMIEGIRHSRA---EKRIFRH-------NDPADLERKLSDLD--PH 176 (406)
T ss_pred HHHHHHHhhcC---------CCCCEEEEccchhHHHHHHHHHcCC---eEEEeCC-------CCHHHHHHHHHhcc--CC
Confidence 98888753221 0456788888899999999888887 7777763 37888888876431 12
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCC-CCCCceeeccccccCCCCcc
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGI-EGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~-~~aDsi~~~~hK~l~~p~~~ 306 (486)
.+.+|+++.+++++|.+.|+++|.++|+++|+++++|++|+.+.+ .+..... ..++ +..|.+..++.|.++.+.
T Consensus 177 ~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~-g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-- 253 (406)
T PRK13393 177 RPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLY-GPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-- 253 (406)
T ss_pred CCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCchhhhcCCCCCCeEEEEeCchhhcccC--
Confidence 345788889999999999999999999999999999999974432 1111111 1122 245777778999998642
Q ss_pred eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 385 (486)
|+++. ++...........+|.+. .+.. ....++..++..+-..+ ...++..++++++++
T Consensus 254 G~~~~-~~~~~~~l~~~~~~~~~t-----------------~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~ 313 (406)
T PRK13393 254 GYITG-SAALCDFIRSFASGFIFT-----------------TSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRA 313 (406)
T ss_pred ceeeC-CHHHHHHHHHhCcCceec-----------------CccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHH
Confidence 55543 333322211111122111 1111 11233344454432222 223556788999999
Q ss_pred HHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEee----eeECCEeEEEEEecC
Q 038818 386 LVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSH----GMVAGIYFIRFAVGA 460 (486)
Q Consensus 386 ~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~----~~~~~~~~lR~~~~~ 460 (486)
.|++. +++++ ++..+++.+.+.. .....++.+.|.+ .|++ +.+ +...+...+|+++ +
T Consensus 314 ~L~~~-g~~~~-~~~~~i~~v~~~~--------------~~~~~~l~~~L~~~~Gi~-v~~~~~p~~p~g~~~iRis~-~ 375 (406)
T PRK13393 314 RLDKA-GIPHL-PNPSHIVPVMVGD--------------PVLCKQISDELLDRYGIY-VQPINYPTVPRGTERLRITP-S 375 (406)
T ss_pred HHHHc-CCCcC-CCCCCeEEEEeCC--------------HHHHHHHHHHHHHhCCEE-EEeECCCCCCCCCceEEEEE-C
Confidence 99876 67655 4455676665421 1234567777776 4764 332 2223557899998 4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l 482 (486)
...|++|||+++++|+++.+++
T Consensus 376 ~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 376 PLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 6778889999999999987654
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=177.04 Aligned_cols=339 Identities=9% Similarity=0.067 Sum_probs=214.5
Q ss_pred HHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 90 LGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 90 ~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
+.+.+...+.. ....|...++...+.+.+.+|+.+.+|++.+ ..++++|+|+++++..++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~-----~~~I~it~G~~~al~~~~~~l~~--------- 153 (462)
T PLN02187 88 AEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLT-----PEDIFLTAGCNQGIEIVFESLAR--------- 153 (462)
T ss_pred HHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCC-----cccEEEeCCHHHHHHHHHHHhcC---------
Confidence 44444444332 2234555556678888888999887765332 13789999999998777766543
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
+++.|+++..+++.+...++..|+ +++.++..+.+++.+|+++|++++++. +.+++++.++||||.+-+
T Consensus 154 --pGd~Vlv~~P~y~~y~~~~~~~g~---~~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s 222 (462)
T PLN02187 154 --PNANILLPRPGFPHYDARAAYSGL---EVRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYS 222 (462)
T ss_pred --CCCEEEEeCCCCccHHHHHHHcCC---EEEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccC
Confidence 677888899999988888999999 999999865446899999999887643 246888889999999865
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC-CCCce-eeccccccCCC-CcceEEEeeCchHH-H--H
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GADSF-SLNAHKWFFTT-LDCCCLWVKNPNAL-I--K 319 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aDsi-~~~~hK~l~~p-~~~g~~~~~~~~~~-~--~ 319 (486)
+++|+++|++||+++++|++|+......+.+... ..+. ....+ ..++.|.++.| .-+|+++..++... . +
T Consensus 223 ~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~-~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~ 301 (462)
T PLN02187 223 HDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSM-GKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTK 301 (462)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeH-HHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHH
Confidence 8889999999999999999997644321111111 1111 11234 45689996654 56898887544211 0 1
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.+.....+. .+.. ....+..++....+ ..+.+++..+...+.++++.+.|++++++...
T Consensus 302 ~~~~~~~~~----------------~~~~--~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~ 363 (462)
T PLN02187 302 VLQSIKQNL----------------DVTP--DPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCP 363 (462)
T ss_pred HHHHHHHhc----------------cccC--CCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC
Confidence 111100000 0000 01223333333333 34567778888888999999999988655433
Q ss_pred cCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHH-HHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 397 APRNFAVVCF-RVLPSASGLGDGKANEGANELNRKL-LESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 397 ~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
..|....+.| ++...... ... + ...+ .+.+.+.|+++..+..+...+++|++++. .++.+++.++.
T Consensus 364 ~~P~gg~fl~~~l~~~~~~------~~~-~--~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~---~~e~l~~al~r 431 (462)
T PLN02187 364 KKPESCTYLLTKLELSLMD------NIK-D--DIDFCVKLAREENLVFLPGDALGLKNWMRITIGV---EAHMLEDALER 431 (462)
T ss_pred CCCCEeEEEEeecChhhCC------CCC-C--HHHHHHHHHhhCCEEEECccccCCCCeEEEEeCC---CHHHHHHHHHH
Confidence 3455544444 34311000 000 0 1233 33445678765555555456899999953 47789999999
Q ss_pred HHHHHHHHhh
Q 038818 475 VQEKLDGILA 484 (486)
Q Consensus 475 l~~~~~~l~~ 484 (486)
|.+++++..+
T Consensus 432 L~~~l~~~~~ 441 (462)
T PLN02187 432 LKGFCTRHAK 441 (462)
T ss_pred HHHHHHHhhh
Confidence 9998876543
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-19 Score=185.46 Aligned_cols=234 Identities=14% Similarity=0.132 Sum_probs=163.7
Q ss_pred HHHHHHhhhcCCCcCCCCCCcceecCCCCCH-HHHHHHHH-----HhhcC--CCccccccChhhHHHHHHHHHHHHHHcC
Q 038818 56 ILQDVQQHIVPGITHWQSPYYFAYFPSSGSI-AGFLGEML-----SSGFN--VVGFNWMSSPAATELENIVMDWLGEMLK 127 (486)
Q Consensus 56 il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~l-----~~~~n--~~~~~~~~~~~~~~le~~~~~~l~~l~g 127 (486)
+++.|++....+...|+.|.+-+-..-..++ .....+++ ..=+. -.....-..|.....|.+ +..+++||
T Consensus 142 l~~aL~~y~~~~~~~fH~PGHk~G~~~~~~~~~~~~~~f~G~~~~~~Dlt~ev~glD~L~~p~G~I~eAq--~~aA~~fg 219 (755)
T PRK15029 142 LFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESE--KYAARVFG 219 (755)
T ss_pred HHHHHHHHHcCCCceeeCCCCCCCCCCCCCchhHHHHHHhccchhhccccccccCCCCCCCCCcHHHHHH--HHHHHHhC
Confidence 5566666666677778888665422100011 11122221 11011 111122233444444444 88999999
Q ss_pred CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC
Q 038818 128 LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS 207 (486)
Q Consensus 128 ~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~ 207 (486)
.+.+| ++++|+|.+|..++.++.. +++.|+++..+|-|+..++.+.|+ ..++++..-.
T Consensus 220 A~~t~--------FlvNGST~gn~a~i~a~~~-----------~gd~Vlv~RN~HKSv~~al~L~ga---~Pvyl~P~~~ 277 (755)
T PRK15029 220 ADRSW--------SVVVGTSGSNRTIMQACMT-----------DNDVVVVDRNCHKSIEQGLILTGA---KPVYMVPSRN 277 (755)
T ss_pred CCcEE--------EEeCChhHHHHHHHHHhcC-----------CCCEEEeecccHHHHHHHHHHcCC---eEEEeccccc
Confidence 98865 8899999999876666654 788899999999999999999999 9998865422
Q ss_pred CC---cccC-----HHHHHHHHHHHH--H--CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc
Q 038818 208 SS---FTLT-----PESLQAAIDLDI--Q--AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI 275 (486)
Q Consensus 208 ~~---~~~d-----~~~L~~~l~~~~--~--~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~ 275 (486)
+. +.++ ++.++++|++.. + .+.+|.+|++|.+|. .|.+-++++|+++|+++|++||||+|||+.+.+
T Consensus 278 ~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F 356 (755)
T PRK15029 278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_pred ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECcccccccc
Confidence 11 2344 999999997643 1 345677888888755 799999999999999999999999999998888
Q ss_pred Cccchh--hhc----CCCCCC-ceeeccccccCCCCcceEEEeeCc
Q 038818 276 CPEFRH--FID----GIEGAD-SFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 276 ~~~~~~--~~~----~~~~aD-si~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
.+.++. .+. .-.++| .++-|.||++.+-.+++++.+++.
T Consensus 357 ~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred CccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 876653 221 113788 889999999999999999999764
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-18 Score=173.03 Aligned_cols=347 Identities=8% Similarity=0.024 Sum_probs=216.5
Q ss_pred HHHHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 86 IAGFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
+|..+.+.+...++.. ...|....+..++.+.+.+|+.+.+|++.+ ..+.++|+|+++++..++.+..+
T Consensus 50 ~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-----~~~I~it~G~~~al~~~~~~l~~----- 119 (409)
T PLN00143 50 TTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS-----PDDVYLTLGCKHAAEIIIKVLAR----- 119 (409)
T ss_pred CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----HhhEEEecChHHHHHHHHHHHcC-----
Confidence 3444555555555432 234655556778888999999888776432 13789999999988777666543
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
+++.|+++..++..+...++..|+ +++.+++++.+++.+|+++|++++++. +..++++.++||||
T Consensus 120 ------~gd~v~v~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~nP~NPTG 184 (409)
T PLN00143 120 ------PEANILLPRPGFPDVETYAIFHHL---EIRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIINPGNPCG 184 (409)
T ss_pred ------CCCEEEEcCCCCcCHHHHHHHcCC---EEEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEECCCCCCC
Confidence 667888898999999999999999 999999864345789999999887543 23677778999999
Q ss_pred ccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCC-C-ceeeccccccC-CCCcceEEEeeCchHHH
Q 038818 245 TVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA-D-SFSLNAHKWFF-TTLDCCCLWVKNPNALI 318 (486)
Q Consensus 245 ~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~a-D-si~~~~hK~l~-~p~~~g~~~~~~~~~~~ 318 (486)
.+-+ +++|+++|++|++++++|.+|.....-...... +..+... . .+..++.|.++ ....+|+++..++..+.
T Consensus 185 ~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~ 263 (409)
T PLN00143 185 SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-MGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLL 263 (409)
T ss_pred CccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcc-hhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhh
Confidence 9966 778888999999999999999764431111111 1111111 1 35567899955 44579998885432111
Q ss_pred HHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 319 KALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 319 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
+...... .+.... . ...++ ..+...++...+ +.+.+++..++..+..+++.+.|+++++...
T Consensus 264 ~~~~~~~-~~~~~~-------~----~~~~~---~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 328 (409)
T PLN00143 264 QICEIAD-SIKKAL-------N----PAPFP---PTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMC 328 (409)
T ss_pred hhHHHHH-HHHHHH-------h----ccCCC---CchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 1000000 000000 0 00000 112222333333 2356778888888888889999988754433
Q ss_pred ecCCCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHH-HHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 038818 396 VAPRNFAVV-CFRVLPSASGLGDGKANEGANELNRKLL-ESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 396 ~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
..+|+.+.+ .+++..... ... ....++. +.+.+.|+.+..+..+...+++|++++ ++++++++.++
T Consensus 329 ~~~p~gg~f~w~~l~~~~~--------~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~---~~~~~l~~al~ 396 (409)
T PLN00143 329 PQKAEGAFFALVKLNLLLL--------EDI-EDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFA---VEQSSLEDGLG 396 (409)
T ss_pred CCCCCeeEEEEEecchhhc--------CCC-CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEc---CCHHHHHHHHH
Confidence 344554444 444432100 000 0022333 344567876665555555679999995 24779999999
Q ss_pred HHHHHHHHHhhc
Q 038818 474 VVQEKLDGILAT 485 (486)
Q Consensus 474 ~l~~~~~~l~~~ 485 (486)
.|.+++++..++
T Consensus 397 rl~~~l~~~~~~ 408 (409)
T PLN00143 397 RLKSFCGRHAKK 408 (409)
T ss_pred HHHHHHHHhccC
Confidence 999998877665
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-19 Score=175.71 Aligned_cols=284 Identities=14% Similarity=0.074 Sum_probs=189.8
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+.+ ..++|+|+++++..++.+... +++.|+++...|..+...++..|+
T Consensus 58 ~lr~~ia~~~~~~~~-------~i~~~~G~~~~l~~~~~~l~~-----------~gd~v~~~~p~y~~~~~~~~~~g~-- 117 (346)
T TIGR01141 58 ELKQALADYYGVDPE-------QILLGNGSDEIIELLIRAFLE-----------PGDAVLVPPPTYSMYEISAKIHGA-- 117 (346)
T ss_pred HHHHHHHHHhCcChH-------HEEEcCCHHHHHHHHHHHhcC-----------CCCEEEEcCCCHHHHHHHHHHcCC--
Confidence 456777888887654 689999999887655554422 566788888877777778888999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~~ 274 (486)
+++.+|+++ ++.+|++.|++++.+. +.+|+++.++|++|.+-|++++.++|+.+ |+++++|++|+....
T Consensus 118 -~~~~~~~~~--~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~ 188 (346)
T TIGR01141 118 -EVVKVPLDE--DGQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSG 188 (346)
T ss_pred -eEEEeccCC--CCCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcC
Confidence 999999975 4689999999876443 34688889999999999999999999987 999999999974321
Q ss_pred cCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
.+......... ..+.+..+++|+++.| ..+|+++.++ ..+.+ +...... + ...
T Consensus 189 -~~~~~~~~~~~-~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~-~~~~~~~----------------~------~~~ 242 (346)
T TIGR01141 189 -EPSTLPLLAEY-PNLIVLRTLSKAFGLAGLRIGYAIANA-EIIDA-LNKVRAP----------------F------NLS 242 (346)
T ss_pred -CccHHHHHhhC-CCEEEEehhhHhhhchhhhceeeecCH-HHHHH-HHhccCC----------------C------CCC
Confidence 11111112111 1235567789999644 4588888743 33332 2111000 0 011
Q ss_pred chHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHH
Q 038818 354 ALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLL 432 (486)
Q Consensus 354 ~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 432 (486)
.+....+...+.. ..+.+..++..++++++.+.|++++++++. ++....+.+.+.. . .+++.
T Consensus 243 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-~---------------~~~~~ 305 (346)
T TIGR01141 243 RLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-D---------------ADALF 305 (346)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-C---------------HHHHH
Confidence 2223333333322 246777888889999999999988888854 4455666665542 1 24567
Q ss_pred HHHHhcCcEEEeeeeECC-EeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 433 ESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 433 ~~l~~~g~~~~~~~~~~~-~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
++|.++|+.+.....+.+ .+++|+++. +++|+++++++|+
T Consensus 306 ~~L~~~gI~v~~g~~f~~~~~~iRls~~----~~~~i~~~~~~l~ 346 (346)
T TIGR01141 306 EALLEKGIIVRDLNSYPGLPNCLRITVG----TREENDRFLAALR 346 (346)
T ss_pred HHHHHCCeEEEeCCCcCCCCCeEEEecC----CHHHHHHHHHHhC
Confidence 777788875443332212 578999973 5779999998874
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=184.94 Aligned_cols=364 Identities=13% Similarity=0.089 Sum_probs=232.2
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHH-------HHHHhhcCCCcccccc
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLG-------EMLSSGFNVVGFNWMS 107 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~l~~~~n~~~~~~~~ 107 (486)
|+.++..-+..||+ +.++.|+++++.++..+|.. ...|.|.-.-+.-.|+++. +|++++ .+++...++
T Consensus 31 P~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~---~~~fig~G~y~~~~p~~i~r~v~~~p~~~Tay-tPyQ~EisQ 105 (939)
T TIGR00461 31 PPNILKRRPLQLEA-PSKEYEALAHLKKIASKNHK---FKSYIGMGYYGTILPPVIQRNLLENPGWYTAY-TPYQPEISQ 105 (939)
T ss_pred CHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCC---ccccCCCCcCCCcCChHHHHHHHhCchhhhcC-CCCChhhhh
Confidence 56666555677885 57999999999987666643 2345552111223334443 445543 444444445
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
+.....+|.+ .++++|.|++.. +..+..++|.+.- |+.++.... + .++..|++++..|+....
T Consensus 106 G~Le~l~e~Q--t~i~eLtGm~~a-------NaSl~d~atA~aE-a~~~a~~~~-~------~~~~~vlv~~~~hP~~~~ 168 (939)
T TIGR00461 106 GRLEALLNFQ--TVVSDLTGLPVA-------NASLLDEGTAAAE-AMALSFNVS-K------KKANKFFVAKDLHPQTKS 168 (939)
T ss_pred HHHHHHHHHH--HHHHHHHCCChh-------hhhccchhhHHHH-HHHHHHHhh-c------CCCCEEEECCCCCcchHH
Confidence 5555566655 999999999976 6788888886553 444333211 0 034678899999987543
Q ss_pred ----HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 ----AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 ----a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
-+...|+ +++.++ +++|++.+ + .+.|+++. .+..|.+.|+++|++++|+.|.++
T Consensus 169 v~~t~a~~~g~---~v~~~~----------~~~l~~~~--~------~~~v~~q~-Pn~~G~ied~~~i~~~~h~~gal~ 226 (939)
T TIGR00461 169 VLHTRAKPFGI---EVIVVD----------CSDIKKAV--D------VFGCLLQY-PATDGSILDYKQLIDALHSHKSLV 226 (939)
T ss_pred HHHHHHHhcCc---EEEEEc----------HHHHhhcC--C------EEEEEEEC-CCCCeEEecHHHHHHHHHHcCCEE
Confidence 3457788 887763 34465554 1 23444444 456899999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccC-----CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-----TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-----~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
++++-..+..++.+. .. -++|.++.+.++|+. +|. .|++.++++ +. ...|+.+.+...+..+.
T Consensus 227 ~~~ad~~al~ll~~P-ge-----~GaDi~vg~~q~fg~p~g~GGP~-aG~~a~~~~--l~---r~lPgrivG~s~D~~G~ 294 (939)
T TIGR00461 227 SVAADLMALTLLTPP-GH-----YGADIVLGSSQRFGVPMGYGGPH-AAFFAVKDE--YN---RKMPGRIVGVSKDALGN 294 (939)
T ss_pred EEEechHHhCCcCCH-HH-----cCCcEEeeCCCccCCCCCCCCCc-eeeeeecHh--hH---hhCCCCceeEEecCCCC
Confidence 996644443333322 11 189999666666654 443 888888875 22 23344444321111111
Q ss_pred cCCCCcccc----CCCCCCc------------hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 339 VDYKDWQIT----LSRRFRA------------LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 339 ~~~~~~~~~----~sr~~~~------------l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
..+. ++++ .-||..+ +.+++++..+|.+|++++.++...++.+|++.|.+ .|++++.++.+.
T Consensus 295 ~~~~-l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~~fF~ 372 (939)
T TIGR00461 295 TALR-LALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELINKTWFD 372 (939)
T ss_pred ccce-eecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCccc
Confidence 1111 1111 1233221 22344477789999999999999999999999998 599998887788
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+.+++.... .+++.+++.++|+. +.. ...+.+++|+. ..+|++||+.+++.+.
T Consensus 373 ~~~v~~~~~~---------------~~~i~~~~~~~gi~-l~~---~~~~~i~~s~~-E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 373 TLTVKVGNGI---------------SSELLKAAEEFNIN-LRA---VDTTTVGIALD-ETTTKADVENLLKVFD 426 (939)
T ss_pred eEEEEeCCCC---------------HHHHHHHHHHCCCe-eee---cCCCEEEEEee-cCCCHHHHHHHHHHhc
Confidence 8888873111 34677778788875 332 22347999995 6888889999999994
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=174.81 Aligned_cols=317 Identities=10% Similarity=0.009 Sum_probs=208.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 109 PAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
++...+.+.+.+|+.+.+|.+ .+. ..++++|+|+++++..++.+..+ +++.|+++..++.....
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~----~~~I~it~Gs~~al~~~~~~~~~-----------~gd~Vlv~~P~y~~~~~ 145 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDP----VTEVIHSIGSKPALAMLPSCFIN-----------PGDVTLMTVPGYPVTGT 145 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCC----cceEEEccCHHHHHHHHHHHhCC-----------CCCEEEEeCCCCccHHH
Confidence 556788899999998888865 221 01588999988887666555433 66778888889988888
Q ss_pred HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEE
Q 038818 188 AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVH 264 (486)
Q Consensus 188 a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lh 264 (486)
.++..|. +++.+|.++++++.+|+++|++++.+. +.+|+++.++||||.+-+ +++|.++|++||+|++
T Consensus 146 ~~~~~g~---~v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 146 HTKYYGG---EVYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred HHHHcCC---EEEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 9999999 999999987556788999999888643 347888889999999976 6788888999999999
Q ss_pred eeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 265 VDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
+|.+|+..... ...... +.+....+.+..++.|.++.| .-+|+++. ++............+..
T Consensus 217 ~DEaY~~~~~~-~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~------------ 282 (410)
T PRK06290 217 QDAAYAALTFD-GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNNDS------------ 282 (410)
T ss_pred EecchhhceeC-CCCcChhcCCCccccEEEEeechhhcCCchhheEeEEe-CHHHHHHHHHHHhcccc------------
Confidence 99999764321 111111 111123456777889999644 45777765 33333221111100000
Q ss_pred CCccccCCCCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE-EeecCCCCCCCCC
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF-RVLPSASGLGDGK 419 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~ 419 (486)
....+...++...+- .+.+++..++..+.++++.+.|++. ++.+. +|+.+.+.| ++.+...+
T Consensus 283 ---------~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~f~l~v~lp~~~~~----- 346 (410)
T PRK06290 283 ---------GQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFKAE-MPGGTFYLYVKAPKGTKS----- 346 (410)
T ss_pred ---------CCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCeeeEEEEECCCcccc-----
Confidence 001122222333331 2345667777788889999999887 77765 455666555 44321100
Q ss_pred CccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 420 ANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
........++.+.|.++|.+++.+..-. .+++|++++.+..++++.++++++|.+.+.++
T Consensus 347 --~~~~~~~~~~~~~Ll~~~~v~~~p~~~~-~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 347 --GIKFENAEEFSQYLIKEKLISTVPWDDA-GHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred --CCCCCCHHHHHHHHHHhCCEEEECCccc-cCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 0000113467778877777554443211 35899999888889999999999999988765
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-18 Score=172.95 Aligned_cols=341 Identities=11% Similarity=0.066 Sum_probs=208.0
Q ss_pred HHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+...+... ...|........+++.+.+++....|.+.. ....++|+|+|+|+..++.+...
T Consensus 51 ~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~ii~t~G~t~al~~~~~~l~~------- 118 (403)
T TIGR01265 51 PEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLT-----ADDVVLTSGCSQAIEICIEALAN------- 118 (403)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----HHHEEEecChHHHHHHHHHHhCC-------
Confidence 34445554444322 224444444556666666666654444321 12689999999998877776543
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..++..+...++..|+ +++.+++++++++.+|++++++++.+.+ .+|++++++|++|.+
T Consensus 119 ----~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~i~~p~NPtG~~ 185 (403)
T TIGR01265 119 ----PGANILVPRPGFPLYDTRAAFSGL---EVRLYDLLPEKDWEIDLDGLEALADEKT------VAIVVINPSNPCGSV 185 (403)
T ss_pred ----CCCEEEEeCCCchhHHHHHHHcCC---EEEEecCCcccCCccCHHHHHHHhCcCc------cEEEEecCCCCCCCC
Confidence 566788888999888889999999 9999988654467899999999886543 368888999999998
Q ss_pred C---CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC-CCC-ceeeccccccCCC-CcceEEEeeCc-hHHHH
Q 038818 247 D---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GAD-SFSLNAHKWFFTT-LDCCCLWVKNP-NALIK 319 (486)
Q Consensus 247 d---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aD-si~~~~hK~l~~p-~~~g~~~~~~~-~~~~~ 319 (486)
- ++++|.++|+++|+++++|++|+.+..-.+.+.. +..+. ... .++.++.|.++.| ..+|+++..++ ..+..
T Consensus 186 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~ 264 (403)
T TIGR01265 186 FSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIP-MASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRD 264 (403)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccc-hhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHH
Confidence 5 4899999999999999999999765432111111 11111 112 3456789986644 56898887543 21111
Q ss_pred -HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 320 -ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 320 -~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
.......+. .. .. +...+....+-..+.......+++..++..+.++++.+.|+.++++++..+
T Consensus 265 ~~~~~~~~~~-~~-------------~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 329 (403)
T TIGR01265 265 TVLQGLKNLL-QR-------------IL-GPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKP 329 (403)
T ss_pred HHHHHHHHHh-hh-------------hc-CCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 000000000 00 00 000011111122222222345667777888888899999998878875544
Q ss_pred CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 399 RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 399 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
.....+.+++...... .. .....+.+.+ .+.|+.+..+..+...+++|+++.. .++.+++.++.|.+
T Consensus 330 ~~g~f~~~~~~~~~~~------~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~---~~~~l~~~l~~l~~ 397 (403)
T TIGR01265 330 EGAMYLMVKLELELFP------EI---KDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV---PESMLEEACSRIKE 397 (403)
T ss_pred CceeEEEEeccccccC------CC---CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC---CHHHHHHHHHHHHH
Confidence 4444555555421100 00 0123455554 4567765555444446799999963 46688999988888
Q ss_pred HHHH
Q 038818 478 KLDG 481 (486)
Q Consensus 478 ~~~~ 481 (486)
++++
T Consensus 398 ~~~~ 401 (403)
T TIGR01265 398 FCER 401 (403)
T ss_pred HHHh
Confidence 7754
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=172.40 Aligned_cols=306 Identities=10% Similarity=0.031 Sum_probs=194.7
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 184 (486)
|....+...+..++.+++++++|.+. . ++.++|+++++.++.+... ++++|+++...|.+
T Consensus 70 ~~~~~g~~~l~~~l~~~l~~~~g~~~--------~-i~~~sG~~a~~~a~~~~~~-----------~gd~vi~~~~~~~~ 129 (385)
T TIGR01825 70 VRTIAGTLRLHEELEEKLAKFKKTEA--------A-LVFQSGFNTNQGVLSALLR-----------KGDIVLSDELNHAS 129 (385)
T ss_pred cCcccCCcHHHHHHHHHHHHHhCCCc--------E-EEECcHHHHHHHHHHHhCC-----------CCCEEEEEccccHH
Confidence 33333456777888999999998643 3 4445558888877665533 56678888899999
Q ss_pred HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 185 LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 185 ~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
...++...|. ++..++ .+|++++++.+.+... ..+.+|+.....+++|.+.|+++|.++|++||++++
T Consensus 130 ~~~~~~~~g~---~~~~~~-------~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li 197 (385)
T TIGR01825 130 IIDGLRLTKA---TKKIYK-------HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTY 197 (385)
T ss_pred HHHHHHhcCC---ceEEeC-------CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEE
Confidence 9888888887 666553 5789999998875431 124567777778999999999999999999999999
Q ss_pred eeccccchhccCccc-hhhhcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 265 VDAAYAGSACICPEF-RHFIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 265 vD~a~g~~~~~~~~~-~~~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
+|++|+.+....... .....++ ...|.+..+++|+++.+ .|+++. +++..........+|..
T Consensus 198 ~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~--gG~~~~-~~~~~~~~~~~~~~~~~------------- 261 (385)
T TIGR01825 198 VDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV--GGYAAG-HKELIEYLKNRARPFLF------------- 261 (385)
T ss_pred EECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC--CCEEec-CHHHHHHHHHhCccccc-------------
Confidence 999996543321100 0000011 35678889999999754 255544 33333321111111211
Q ss_pred CccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCc
Q 038818 343 DWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKAN 421 (486)
Q Consensus 343 ~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 421 (486)
.++.. ....++..++..+.. ..+..++..++++++.+.|+++ ++++. .+..+++.+.+.+
T Consensus 262 ----~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~----------- 322 (385)
T TIGR01825 262 ----STAQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYDTG-GSETPITPVVIGD----------- 322 (385)
T ss_pred ----cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEECC-----------
Confidence 00000 111222333333211 1345677778899999999886 77765 3444555555432
Q ss_pred cchHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 422 EGANELNRKLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 422 ~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
......+.+.|.++|+. +.+..+ .+..++|+++ +..++++||+++++.|+++++++
T Consensus 323 ---~~~~~~~~~~L~~~gi~-v~~~~~~~~~~~~~~iRi~~-~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 323 ---EKAAQEFSRRLFDEGIF-AQSIVFPTVPRGTARIRNIP-TAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred ---HHHHHHHHHHHHHCCcE-EcccCCCCCCCCCceEEEEE-cCCCCHHHHHHHHHHHHHHHHHh
Confidence 11234677777777874 332211 2446899987 45678889999999999988654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=174.53 Aligned_cols=315 Identities=13% Similarity=0.043 Sum_probs=203.0
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..|....+..++.+.+.+++.+.+|.+.+. ...+++|+|+++++..++..... +++.|+++..+|
T Consensus 57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~----~~~i~~t~G~~~al~~~~~~~~~-----------~gd~Vlv~~p~y 121 (387)
T PRK08912 57 NQYPPMMGLPELRQAVAAHYARFQGLDLDP----ETEVMVTSGATEALAAALLALVE-----------PGDEVVLFQPLY 121 (387)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----cccEEEeCCcHHHHHHHHHHhcC-----------CCCEEEEeCCCc
Confidence 445555556789999999999888864331 01688999999988666554432 567788899999
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHh
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRY 259 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~ 259 (486)
..+...++..|+ +++.+|+++ +++.+|+++|++.+.+. +.+|+++.++|+||.+-+ +++|.++|++|
T Consensus 122 ~~~~~~~~~~g~---~~~~~~~~~-~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~ 191 (387)
T PRK08912 122 DAYLPLIRRAGG---VPRLVRLEP-PHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAEFCQRH 191 (387)
T ss_pred hhhHHHHHHcCC---EEEEEecCc-ccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC
Confidence 999999999999 999999874 35789999999988643 336777899999999865 77799999999
Q ss_pred CceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 260 SIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 260 g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
++++++|.+|+.+.......... +.+...-+.+..+++|.++.| ..+|+++...+ ...........+..
T Consensus 192 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~-~~~~l~~~~~~~~~------- 263 (387)
T PRK08912 192 DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPP-LLRVLAKAHQFLTF------- 263 (387)
T ss_pred CeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHH-HHHHHHHHHhhccc-------
Confidence 99999999997543211111111 112223457788899998844 45888877543 32221111100000
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeE-EEEEeecCCC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAV-VCFRVLPSAS 413 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-v~f~~~~~~~ 413 (486)
.. ......+....+ ..+.+++..++..+.++++.+.|++. ++++. ++..+. +++.+.+...
T Consensus 264 ----------~~----~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~l~~~l~~~~~ 327 (387)
T PRK08912 264 ----------TT----PPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI-GFPVL-PSQGTYFLTVDLAPLGL 327 (387)
T ss_pred ----------cC----ChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEecccccCC
Confidence 00 011111111212 23456677788888899999999887 77765 444444 3445443110
Q ss_pred CCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC----CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA----GIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~----~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.....++.+.+. +.|+.+.++..+. +.+++|++++. .++++++.++.|.+.++
T Consensus 328 -----------~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~---~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 328 -----------AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK---RDATLDEAVERLAAARR 385 (387)
T ss_pred -----------CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 001234566654 4677554443332 25799999964 36788888888887654
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=175.54 Aligned_cols=326 Identities=12% Similarity=0.050 Sum_probs=205.4
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
+..+.+.+...+......|...++..++.+.+.+++.+.+|.+.+ ....++|+|+++++..++.+...
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~it~G~~~al~~~~~~~~~------- 114 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVD-----PERILVTPGGSGALLLASSLLVD------- 114 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCC-----hhhEEEccCcHHHHHHHHHHhcC-------
Confidence 444555555555433345666666788988999999888776432 13789999999998776655432
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..+|.+....+...|. +++.+|+++++++.+|++.|++++++.+ .+++++.++|+||.+
T Consensus 115 ----~gd~vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~ 181 (387)
T PRK08960 115 ----PGKHWLLADPGYPCNRHFLRLVEG---AAQLVPVGPDSRYQLTPALVERHWNADT------VGALVASPANPTGTL 181 (387)
T ss_pred ----CCCEEEEcCCCCcchHHHHHhcCC---eEEEEecCcccCCCCCHHHHHHHhCccc------eEEEEECCCCCCCcC
Confidence 677888999999999999999999 9999999865567899999999887543 367788899999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCC-ceeeccccccC-CCCcceEEEeeCchHHHHHh
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD-SFSLNAHKWFF-TTLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aD-si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~ 321 (486)
-+ +++|+++|++||+++++|++|..... .+.....+ .+. .+ .+..+++|.++ ...-+|+++..++ .+....
T Consensus 182 ~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~-~~~~~~~~-~~~-~~vi~~~S~SK~~g~~GlRiG~~~~~~~-~~~~~~ 257 (387)
T PRK08960 182 LSRDELAALSQALRARGGHLVVDEIYHGLTY-GVDAASVL-EVD-DDAFVLNSFSKYFGMTGWRLGWLVAPPA-AVPELE 257 (387)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEcccccccc-CCCCCChh-hcc-CCEEEEeecccccCCcccEEEEEEcCHH-HHHHHH
Confidence 66 56777789999999999999976432 21111111 121 23 45567899986 4345888887543 322111
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
.....+. . ....+...++...+ ..+.+.+..+...+..+.+.+.|+++ ++.+...
T Consensus 258 ~~~~~~~-----------------~----~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 315 (387)
T PRK08960 258 KLAQNLY-----------------I----SASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVE 315 (387)
T ss_pred HHHhhhc-----------------c----CCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcC
Confidence 1100000 0 01122222222222 12455666667777888899999886 6655334
Q ss_pred CCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC---CEeEEEEEecCCCCcHHHHHHHHH
Q 038818 399 RNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA---GIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 399 ~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~---~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
|..+.+.| ++..... + ..++.+.+. ++|+.+.++..+. +..++|+++.. +.+.+.+.++
T Consensus 316 p~g~~f~~~~~~~~~~-----------~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~---~~~~l~~al~ 379 (387)
T PRK08960 316 PQGAFYLYADISAFGG-----------D--AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ---SLPRLQEAVE 379 (387)
T ss_pred CCeeEEEEEeccccCC-----------C--HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC---CHHHHHHHHH
Confidence 44444433 3322100 1 235565654 4677544443332 23689999963 4557777776
Q ss_pred HHHHHH
Q 038818 474 VVQEKL 479 (486)
Q Consensus 474 ~l~~~~ 479 (486)
.|.+++
T Consensus 380 ~l~~~~ 385 (387)
T PRK08960 380 RIARGL 385 (387)
T ss_pred HHHHHH
Confidence 666544
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=174.98 Aligned_cols=325 Identities=14% Similarity=0.060 Sum_probs=208.1
Q ss_pred HHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCC
Q 038818 92 EMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENIS 171 (486)
Q Consensus 92 ~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~ 171 (486)
+.+...+......|...++..++++.+.+++.+.+|.+... ....++|+||++|+..++.+... +
T Consensus 44 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~----~~~i~~t~G~~~al~~~~~~~~~-----------~ 108 (387)
T PRK07777 44 EAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDP----DTEVLVTVGATEAIAAAVLGLVE-----------P 108 (387)
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCCcHHHHHHHHHHhcC-----------C
Confidence 33444443333456666677889999999999988875321 01588999999998766654422 5
Q ss_pred CeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC---
Q 038818 172 RLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD--- 247 (486)
Q Consensus 172 ~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id--- 247 (486)
++.|++....|.....+++..|. +++.++.+++ .++.+|+++|++++++. +.+|+++.++|++|.+-
T Consensus 109 gd~vli~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~ 179 (387)
T PRK07777 109 GDEVLLIEPYYDSYAAVIAMAGA---HRVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSPHNPTGTVLTAA 179 (387)
T ss_pred CCEEEEeCCCchhhHHHHHHCCC---EEEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCCCCCCCccCCHH
Confidence 66777788889888899999999 9999998764 25789999999988653 34677888999999874
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~ 324 (486)
++++|.++|++|++++++|.+|+............ +.+....+.+..+++|.++.| ..+|+++..++ ... .+...
T Consensus 180 ~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~-l~~-~~~~~ 257 (387)
T PRK07777 180 ELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAP-LIA-AVRAA 257 (387)
T ss_pred HHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHH-HHH-HHHHH
Confidence 58899999999999999999997644311111111 122233567788899999854 44787776543 222 22111
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS--FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~--~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
..+... ........++... .+.+.++++.+...++++++.+.|++. ++++. ++..+
T Consensus 258 ~~~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~g~ 315 (387)
T PRK07777 258 KQYLTY--------------------VGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA-GFEVH-DSAGT 315 (387)
T ss_pred Hhhccc--------------------CCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC-CCCcc-CCCcc
Confidence 111100 0011111111111 234566677788888999999999886 67765 44444
Q ss_pred EEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC-----CEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 403 VVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA-----GIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 403 ~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~-----~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
.+.+ .+.+.. .. ....+.+++. +.|+.+.++..+. +..++|+++.. .++++++.++.|
T Consensus 316 ~~~~~~~~~~~--------~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~---~~~~l~~~l~~l 380 (387)
T PRK07777 316 YFLCADPRPLG--------YD----DGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK---RDDTLDEAIRRL 380 (387)
T ss_pred eEEEecccccC--------CC----CHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC---CHHHHHHHHHHH
Confidence 4433 443211 00 1245666665 4577544433332 24689999953 577999999888
Q ss_pred HHHH
Q 038818 476 QEKL 479 (486)
Q Consensus 476 ~~~~ 479 (486)
.++.
T Consensus 381 ~~~~ 384 (387)
T PRK07777 381 RALR 384 (387)
T ss_pred HHHh
Confidence 7754
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=180.85 Aligned_cols=334 Identities=10% Similarity=0.012 Sum_probs=209.5
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcC--CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLK--LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g--~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
.+.+.+...+.. ...|....+..++.+.+.+++.+..+ ++++ ++++|+|+++++..++.+..+
T Consensus 166 ~~~~~~~~~~~~-~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~-------~I~it~G~~eal~~~~~~l~~------- 230 (517)
T PRK13355 166 EVVYDMAQQLTD-TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVD-------DIYTGNGVSELINLSMSALLD------- 230 (517)
T ss_pred HHHHHHHHHhhc-CCCCCCCcChHHHHHHHHHHHHhcCCCCCChh-------HEEEeCcHHHHHHHHHHHhCC-------
Confidence 333444333332 23566666677888888888866543 3333 789999999998777765533
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..++..+...++..|. +++.++++++++|.+|+++|++++.+.+ .+|+++.++||||.+
T Consensus 231 ----~Gd~Vli~~P~y~~y~~~~~~~g~---~~v~~~~~~~~~~~~d~~~l~~~~~~~~------k~i~i~nP~NPTG~v 297 (517)
T PRK13355 231 ----DGDEVLIPSPDYPLWTACVNLAGG---TAVHYRCDEQSEWYPDIDDIRSKITSRT------KAIVIINPNNPTGAL 297 (517)
T ss_pred ----CCCEEEEcCCCCcCHHHHHHHCCC---EEEEeecCcccCCCCCHHHHHHhcCcCc------eEEEEECCCCCCCcC
Confidence 677888999999999999999999 9999999876678999999999886543 378888999999999
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCcee-eccccccC-CCCcceEEEee-CchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFS-LNAHKWFF-TTLDCCCLWVK-NPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~-~~~hK~l~-~p~~~g~~~~~-~~~~~~~~ 320 (486)
-+ +++|+++|++||+++++|++|.........+..........-.++ .++.|.++ +..-+|++++. ++......
T Consensus 298 ~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~ 377 (517)
T PRK13355 298 YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDY 377 (517)
T ss_pred cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHH
Confidence 77 889999999999999999999754321111111111111222343 45799875 44568888864 23221111
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-HHHHHH---HHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-ANLRNF---LRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-~g~~~~---~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.... ..+... .. ....+..+++...+.. +.+.+. .++..+.++++.+.|+++|++++.
T Consensus 378 ~~~l-~~~~~~--------------~~---~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 439 (517)
T PRK13355 378 IEGL-NMLANM--------------RL---CSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAV 439 (517)
T ss_pred HHHH-HHHhcC--------------cC---CcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 0000 000000 00 0123334444444421 112222 234556678899999988888865
Q ss_pred cCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHH
Q 038818 397 APRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 397 ~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
+|..+.+.| ++....... . + ....+.+.|.+.|+++..+..+. +.+++|+++. .+++++++.++
T Consensus 440 -~p~g~fy~~~~l~~~~~~~------~--~-~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~---~~~~~l~~a~~ 506 (517)
T PRK13355 440 -KPKAAFYIFPKIDVKKFNI------H--D-DEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL---PRLEDLEDAMD 506 (517)
T ss_pred -CCCeeeEEEeecCcccCCC------C--C-HHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC---CCHHHHHHHHH
Confidence 566777766 443211000 0 0 11233445567787666555443 4679999983 46778999999
Q ss_pred HHHHHHHH
Q 038818 474 VVQEKLDG 481 (486)
Q Consensus 474 ~l~~~~~~ 481 (486)
.|.+.++.
T Consensus 507 rl~~~~~~ 514 (517)
T PRK13355 507 RLADFFSY 514 (517)
T ss_pred HHHHHHHH
Confidence 98887754
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=174.43 Aligned_cols=335 Identities=15% Similarity=0.111 Sum_probs=199.5
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN 169 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 169 (486)
+.+...+++..+...|..++...++++.+.+ ++|.+ .+++|+|||+|+..++.+..+
T Consensus 59 ~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~----~~~~~---------~vv~t~ggt~A~~~~~~all~---------- 115 (460)
T PRK13238 59 MSDRQWAAMMRGDEAYAGSRSYYRLEDAVKD----IFGYP---------YTIPTHQGRAAEQILFPVLIK---------- 115 (460)
T ss_pred hhHHHHHHHHhCCcccCCCCCHHHHHHHHHH----HhCCC---------cEEECCCHHHHHHHHHHHhCC----------
Confidence 4444444443444578888888888876544 44543 479999999999887766533
Q ss_pred CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC------CC--cccCHHHHHHHHHHHHHCCCccEEEEeecCCc
Q 038818 170 ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS------SS--FTLTPESLQAAIDLDIQAGLIPLFLCATVGTT 241 (486)
Q Consensus 170 ~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~------~~--~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt 241 (486)
+++ |+++...+.+....+...|. +++.+|+++. .. |.+|+++|+++|.+... .++.+|+++.++|
T Consensus 116 -pGD-Vii~~p~~~~~~~~i~~~G~---~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~N 188 (460)
T PRK13238 116 -KGD-VVPSNYHFDTTRAHIELNGA---TAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNN 188 (460)
T ss_pred -CCC-EEccCCcccchHHHHHHcCC---EEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCC
Confidence 555 65665533345555778898 9999998641 12 45999999999975321 1245799999999
Q ss_pred ccc-cc---CCchHHHHHHHHhCceEEeeccccc-hhccCc----cchhh-hcC-----CCCCCceeeccccccCCCCcc
Q 038818 242 AIT-TV---DPLGPLCDIAKRYSIWVHVDAAYAG-SACICP----EFRHF-IDG-----IEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 242 ~~G-~i---dpl~~I~~i~~~~g~~lhvD~a~g~-~~~~~~----~~~~~-~~~-----~~~aDsi~~~~hK~l~~p~~~ 306 (486)
++| .+ +++++|+++|++||+++++|+|+.. ..++.. .+... +.. .+.+|++++++||.+++|.|
T Consensus 189 ptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G- 267 (460)
T PRK13238 189 SAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG- 267 (460)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-
Confidence 998 44 5578999999999999999998743 122211 01110 000 14699999999999999985
Q ss_pred eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHHH-hchHHHHHHHHHHHHHHHHHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLRS-FGVANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~~-~g~~g~~~~~~~~~~~a~~l~ 384 (486)
|++++++++...+.-.....+ .. +...++-... ..++..+++. ... +..+...+.+++|.
T Consensus 268 G~i~~~d~~l~~~~~~~~~~~--~g------------~~t~~g~~~~~~~Ala~~l~e~~~~----~~~~~~~~~~~~l~ 329 (460)
T PRK13238 268 GLLCFRDEDLFTECRTLCILY--EG------------FPTYGGLAGRDMEALAVGLYEGMDE----DYLAYRIGQVEYLG 329 (460)
T ss_pred eEEEcChHHHHHHhhhccccc--CC------------cccccCcHHHHHHHHHhhHHHhhCh----HHHHHHHHHHHHHH
Confidence 888888765554321111000 00 0011111111 1122222221 122 23344455678999
Q ss_pred HHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeE-------CC------
Q 038818 385 ELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMV-------AG------ 450 (486)
Q Consensus 385 ~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~-------~~------ 450 (486)
+.|++. |+.++.|.....+...+.......+ ..... ...+...| .+.|+..+..+.+ .+
T Consensus 330 ~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~----~~~~~--~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~ 402 (460)
T PRK13238 330 EGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIP----AEQFP--AQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAP 402 (460)
T ss_pred HHHHHC-CCCeEccCCceEEEEEchhcCCCCC----CCCCc--hHHHHHHHHHHcCeeeecccceecccCCCCccccCCc
Confidence 999886 8998865544333333322100000 00001 13344444 3567655444322 12
Q ss_pred EeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 451 IYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 451 ~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
...+|+++.-..-|.+++|.+.+.|+++.+
T Consensus 403 ~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 403 AELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred cceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 478999995434477799999999998864
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-19 Score=175.05 Aligned_cols=318 Identities=14% Similarity=0.086 Sum_probs=195.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.+|...++|+. +++++|.+ .+++++|||+|+..++.+..-. +++.|+++..+|.+..
T Consensus 31 ~g~~~~~le~~----la~~~g~~---------~~v~~~sgt~al~lal~al~~~----------~Gd~Viv~~~~~~~~~ 87 (379)
T PRK11658 31 TGPKNQALEQA----FCQLTGNQ---------HAIAVSSATAGMHITLMALGIG----------PGDEVITPSLTWVSTL 87 (379)
T ss_pred CCHhHHHHHHH----HHHHhCCC---------eEEEECCHHHHHHHHHHHcCCC----------CCCEEEECCCcHHHHH
Confidence 46666666655 66677764 3588899999988777665211 6778899999999999
Q ss_pred HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
.++...|+ +++.++++++ ++.+|+++|++++.+.+ .+|+.+ +++|...|+++|.++|+++|+++++|
T Consensus 88 ~~~~~~G~---~~v~vd~~~~-~~~~d~~~l~~~i~~~t------kav~~~---~~~G~~~d~~~i~~~a~~~gi~vi~D 154 (379)
T PRK11658 88 NMIVLLGA---TPVMVDVDRD-TLMVTPEAIEAAITPRT------KAIIPV---HYAGAPADLDAIRAIGERYGIPVIED 154 (379)
T ss_pred HHHHHcCC---EEEEEecCCC-cCCcCHHHHHHhcccCC------eEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEE
Confidence 99999999 9999999863 46899999999987543 245533 45899999999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhc--CCcccccCccC-CCCCccCCCC
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALS--TNPEFLRNKAS-DSKQVVDYKD 343 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~--~~~~y~~~~~~-~~~~~~~~~~ 343 (486)
+|++.+....... + +-.+.+.++++.+|.+.++ ..|++++++++...+... ....+...... .......+..
T Consensus 155 ~a~a~g~~~~~~~---~-g~~g~~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 229 (379)
T PRK11658 155 AAHAVGTYYKGRH---I-GARGTAIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEV 229 (379)
T ss_pred CCCccCCeECCee---c-CCCCCEEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCccee
Confidence 9997544332211 1 1124578899999998764 355566666655433221 11101000000 0000000000
Q ss_pred ccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC-----eeEEEEEeecCCCCCCCC
Q 038818 344 WQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN-----FAVVCFRVLPSASGLGDG 418 (486)
Q Consensus 344 ~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-----~~~v~f~~~~~~~~~~~~ 418 (486)
...+..+....+-+++...-.+++++..++..++++++.+.|++++...+..+.. ..++++++.+...
T Consensus 230 --~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 302 (379)
T PRK11658 230 --LTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERC----- 302 (379)
T ss_pred --eccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccc-----
Confidence 0112122222333444444457899999999999999999999886432322211 2345556542110
Q ss_pred CCccchHHHHHHHHHHHHhcCcEEE---eeee----EC--------------CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 419 KANEGANELNRKLLESINASGQLYV---SHGM----VA--------------GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~----~~--------------~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
+....++.+.|.++|+..- .+.. +. ....+-+- +++..+++|++++++.|++
T Consensus 303 ------~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP-~~~~l~~~~~~~i~~~i~~ 375 (379)
T PRK11658 303 ------GISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLP-LFPDMTDADVDRVITALQQ 375 (379)
T ss_pred ------cCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEcc-CCCCCCHHHHHHHHHHHHH
Confidence 0113356666666675211 0100 00 01223332 4788999999999999998
Q ss_pred HH
Q 038818 478 KL 479 (486)
Q Consensus 478 ~~ 479 (486)
+.
T Consensus 376 ~~ 377 (379)
T PRK11658 376 IA 377 (379)
T ss_pred HH
Confidence 65
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-18 Score=176.10 Aligned_cols=322 Identities=12% Similarity=0.106 Sum_probs=206.3
Q ss_pred cccChhhHHHHHHHHHHHHHHcC----CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC
Q 038818 105 WMSSPAATELENIVMDWLGEMLK----LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g----~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~ 180 (486)
|....+..++.+.+.+|+.+.+| ++++ .+++|+|+++++..++.+..+ +++.|+++..
T Consensus 90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe-------~Ivit~Ga~~al~~l~~~l~~-----------pGD~Vlv~~P 151 (496)
T PLN02376 90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDPE-------RVVMSGGATGANETIMFCLAD-----------PGDVFLIPSP 151 (496)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCcCChh-------hEEEccchHHHHHHHHHHhCC-----------CCCEEEECCC
Confidence 33444567898999999999887 4443 789999999998777666544 6788899999
Q ss_pred CchHHHHHHH-HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHH
Q 038818 181 THSALQKAAQ-IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIA 256 (486)
Q Consensus 181 ~H~s~~~a~~-~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~ 256 (486)
.+..+...+. ..|+ +++.||++.++++.+|+++++++++...+.+..+.+|+++.++||||.+-+ +++|+++|
T Consensus 152 ~Y~~~~~~~~~~~G~---~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a 228 (496)
T PLN02376 152 YYAAFDRDLRWRTGV---EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFV 228 (496)
T ss_pred CccchHHHHHhhCCC---EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHH
Confidence 9999888777 4799 999999975456899999999887655444445667888899999999966 67788899
Q ss_pred HHhCceEEeeccccchhccCccchhh---hcCCC----CCC--ceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcc
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHF---IDGIE----GAD--SFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~---~~~~~----~aD--si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
++||+++++|.+|+......+.+... ..... ..+ .+..++.|.++ ...-+|+++..++.... .......
T Consensus 229 ~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~-~~~~~~~ 307 (496)
T PLN02376 229 TRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVS-CARKMSS 307 (496)
T ss_pred HHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHH-HHHHHhh
Confidence 99999999999998754322222221 11101 112 23568999997 44679998886554432 2211110
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHH-----HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVAN-----LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF 401 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g-----~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 401 (486)
+. ....+..+++...+.... +.+..++..+..+.+.+.|++. ++++.. +..
T Consensus 308 ~~----------------------~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~-~~a 363 (496)
T PLN02376 308 FG----------------------LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLT-SNA 363 (496)
T ss_pred cC----------------------CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCc
Confidence 10 012233333333332222 2333455566777788888875 677653 455
Q ss_pred eEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 402 AVVCF-RVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 402 ~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
+.++| .+..... .....+...++.+.+.++ |+.+.++..+. +.+++|+++.+ .+++.++..++.|++
T Consensus 364 G~flwi~l~~~~~-------~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~--~~~~~l~~al~rl~~ 434 (496)
T PLN02376 364 GLFAWMDLRHLLR-------DRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN--MDDDTLHVALGRIQD 434 (496)
T ss_pred eEEEEEEchhhhc-------cCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC--CCHHHHHHHHHHHHH
Confidence 45444 4432100 000011123566666654 66544443342 36799999964 346789999999988
Q ss_pred HHHH
Q 038818 478 KLDG 481 (486)
Q Consensus 478 ~~~~ 481 (486)
++++
T Consensus 435 ~l~~ 438 (496)
T PLN02376 435 FVSK 438 (496)
T ss_pred HHHH
Confidence 7753
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=172.95 Aligned_cols=334 Identities=10% Similarity=0.050 Sum_probs=212.0
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|...+...++++.+.+|+.+.+|..-+ ..+.++|+|+++++..++.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~it~G~~~al~~~~~~~~~-------- 115 (398)
T PRK08363 49 EHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDIT-----PDDVRVTAAVTEALQLIFGALLD-------- 115 (398)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC-----hhhEEEeCCHHHHHHHHHHHhCC--------
Confidence 33444554444322234555566788999999998887775322 12789999999988777665533
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEE-ecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI-KTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v-~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..+|......++.+|. .++.+ +.++ +.+.+|++.|++++.+. +.+|+++.++|++|.+
T Consensus 116 ---~gd~Vl~~~p~y~~~~~~~~~~g~---~~v~~~~~~~-~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~ 182 (398)
T PRK08363 116 ---PGDEILIPGPSYPPYTGLVKFYGG---VPVEYRTIEE-EGWQPDIDDIRKKITEK------TKAIAVINPNNPTGAL 182 (398)
T ss_pred ---CCCEEEEcCCCCcchHHHHHHcCC---EEEEeccccc-cCCcCCHHHHHhhCCcc------eEEEEEECCCCCCCcC
Confidence 677888899999999999999998 88877 5554 34689999999888653 3467788999999988
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCC-Cce-eeccccccC-CCCcceEEEee-CchHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA-DSF-SLNAHKWFF-TTLDCCCLWVK-NPNALIK 319 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~a-Dsi-~~~~hK~l~-~p~~~g~~~~~-~~~~~~~ 319 (486)
-+ +++|+++|+++|+++++|++|+.... ...... +..+... ..+ ..+++|+++ ....+|++++. ++.....
T Consensus 183 ~~~~~~~~l~~~a~~~~~~li~Deay~~~~~-~~~~~~-~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~ 260 (398)
T PRK08363 183 YEKKTLKEILDIAGEHDLPVISDEIYDLMTY-EGKHVS-PGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAE 260 (398)
T ss_pred cCHHHHHHHHHHHHHcCeEEEEhhhhhhhcc-CCcccC-HHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHH
Confidence 66 88999999999999999999976432 111111 1111122 233 567899955 55678998873 3322221
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
.......+... .. ....+...++...+ ..+.+++..++..+..+++.+.|.+++++++.
T Consensus 261 l~~~~~~~~~~--------------~~----~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~- 321 (398)
T PRK08363 261 VREAIDKLARI--------------RL----CPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTT- 321 (398)
T ss_pred HHHHHHHHhcc--------------cc----cCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEec-
Confidence 11100000000 00 01222222222222 34667777888888899999999988887754
Q ss_pred CCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 398 PRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 398 ~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+|..+.+.| ++.+... . +. ...+.+.+.++|+.+.++..+. +..++|+++. .+++++++.++.
T Consensus 322 ~p~g~~~~~~~l~~~~~--------~--~~-~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~---~~~~~l~~~l~~ 387 (398)
T PRK08363 322 KPQGAFYIFPRIEEGPW--------K--DD-KEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL---PPVEILEEAMDR 387 (398)
T ss_pred CCCeEEEEEEEeccCCC--------C--CH-HHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec---CCHHHHHHHHHH
Confidence 566676666 4443100 0 00 1122344566787655544443 3569999984 247789999999
Q ss_pred HHHHHHHH
Q 038818 475 VQEKLDGI 482 (486)
Q Consensus 475 l~~~~~~l 482 (486)
|++++++.
T Consensus 388 l~~~~~~~ 395 (398)
T PRK08363 388 FEEFMRER 395 (398)
T ss_pred HHHHHHHh
Confidence 99887654
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=177.00 Aligned_cols=318 Identities=16% Similarity=0.154 Sum_probs=208.4
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|....+...+++.+.+|+.+..|.+.+. ...+++++|+.+++..+...... .++..|+++...
T Consensus 37 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-----~~~i~~~~G~~~~~~~~~~~~~~---------~~~~~vlv~~P~ 102 (363)
T PF00155_consen 37 FLGYPPPQGYPELREAIADFLGRRYGVPVDP-----EANILVTSGAQAALFLLLRLLKI---------NPGDTVLVPDPC 102 (363)
T ss_dssp CTSSTCTTHHHHHHHHHHHHHHHHHTHHTTG-----GEGEEEESHHHHHHHHHHHHHHS---------STTSEEEEEESS
T ss_pred cccCCCchhhHHHHHHHHHHhhhccCccccc-----ceEEEEecccccchhhhhhcccc---------cccccceecCCc
Confidence 3456666667889999888888666665432 11455555555555544443310 156778889999
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc---hHHHHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL---GPLCDIAKR 258 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl---~~I~~i~~~ 258 (486)
|..+...++..|+ +++.+|++..+++.+|+++|++.+++...++..+.+|+++.++||||..-+. ++|+++|++
T Consensus 103 y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~ 179 (363)
T PF00155_consen 103 YPSYIEAARLLGA---EVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELARE 179 (363)
T ss_dssp STHHHHHHHHTTS---EEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHH
T ss_pred cccccccccccCc---eeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcc
Confidence 9999999999999 9999997654578999999999999865544335678889999999988665 555555999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCC-CC-CceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIE-GA-DSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~a-Dsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
||+++++|.+|+.+....+........++ .. ..++.++.|.++.| ...|++++ ++......-.....+...
T Consensus 180 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~----- 253 (363)
T PF00155_consen 180 YNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLSS----- 253 (363)
T ss_dssp TTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSS-----
T ss_pred cccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccc-hhhhhhhhhhcccccccc-----
Confidence 99999999999876554322111011111 22 36778899998866 45788888 443332211111111100
Q ss_pred CCccCCCCccccCCCCCCchHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCC
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWLVLRSFG--VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSAS 413 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~ 413 (486)
......+...+...+ .+.+++..++..++++++.+.|++. ++.+..++ .+++++...+.
T Consensus 254 ---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~-- 314 (363)
T PF00155_consen 254 ---------------SPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWVRLDP-- 314 (363)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEESH--
T ss_pred ---------------chhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEEEccc--
Confidence 001111122222222 1267788888999999999999888 89987655 56666654431
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
.....+.+.|.++ |+.+.++..+...+++|+++ ...+++++++++++|
T Consensus 315 ------------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~--a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 315 ------------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL--ASHSEEDLEEALERL 363 (363)
T ss_dssp ------------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG--GCSCHHHHHHHHHHH
T ss_pred ------------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe--ccCCHHHHHHHHhhC
Confidence 1345677778777 87655544434477899998 256777999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=174.20 Aligned_cols=227 Identities=15% Similarity=0.172 Sum_probs=158.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~ 192 (486)
++.+.+++++|.+. .+++++|+.|+..++.+... +++.|+++...|.+ +...+...
T Consensus 67 ~le~~lA~l~g~~~---------av~~~sG~~Ai~~al~al~~-----------~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 126 (389)
T PRK05968 67 AFEEMLAKLEGAED---------ARGFASGMAAISSTVLSFVE-----------PGDRIVAVRHVYPDAFRLFETILKRM 126 (389)
T ss_pred HHHHHHHHHhCCCc---------EEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHHHHHHc
Confidence 34456788888753 46677888888777654322 56677778777765 33566778
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|+ +++.++.+ |++++++++ +.+ .+|+++.++++++.+.|+++|+++|+++|+++++|++|+.+
T Consensus 127 G~---~v~~vd~~-------d~~~l~~~i-~~t------klV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 127 GV---EVDYVDGR-------DEEAVAKAL-PGA------KLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred Cc---eEEEeCCC-------CHHHHHHhc-ccC------CEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 88 88887642 889999887 322 36888889999999999999999999999999999999765
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
....+ .. .++|.++.+++|++++|.+ .|+++ .+++.+.+......+++. -
T Consensus 190 ~~~~p-~~------~g~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~g--------------------~ 241 (389)
T PRK05968 190 VFQRP-IT------LGVDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYLG--------------------A 241 (389)
T ss_pred hccCc-hh------cCCcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhCC--------------------C
Confidence 43222 11 2689999999999998754 56555 444443322211111111 0
Q ss_pred CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC------------CeeEEEEEeec
Q 038818 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR------------NFAVVCFRVLP 410 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------~~~~v~f~~~~ 410 (486)
......+|..++ +.+.+..++++..++++++.+.|+++|+++.+..| ..++++|.+.+
T Consensus 242 ~~~~~~A~~~l~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 242 KLSPFEAWLLLR--GLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred CCChHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC
Confidence 123355565554 44677889999999999999999999998765533 13588998863
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-18 Score=170.17 Aligned_cols=333 Identities=15% Similarity=0.167 Sum_probs=205.9
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|....+..++++.+.+++.+.+|.+... ....++|+|+++++..++.....
T Consensus 47 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~----~~~i~it~G~~~al~~~~~~~~~--------- 113 (391)
T PRK07309 47 HVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAP----ENEILVTIGATEALSASLTAILE--------- 113 (391)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCChHHHHHHHHHHhcC---------
Confidence 34444443332222345444456789999999998888763210 12689999999998777665432
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC-
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD- 247 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id- 247 (486)
+++.|++...+|..+...++..|. +++.+|++++ ++.+|++.|+++++... ..+.+|+++.++|++|.+-
T Consensus 114 --~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~~~~~~---~~~~~i~l~~P~NPtG~~~s 184 (391)
T PRK07309 114 --PGDKVLLPAPAYPGYEPIVNLVGA---EIVEIDTTEN-DFVLTPEMLEKAILEQG---DKLKAVILNYPANPTGVTYS 184 (391)
T ss_pred --CCCEEEEeCCCCcchHHHHHHcCC---EEEEEecCCc-CCcCCHHHHHHHhhccC---CCeEEEEEECCCCCCCcCcC
Confidence 566788888899889999999999 9999998752 46899999999986421 1245778888999999874
Q ss_pred --CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC
Q 038818 248 --PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 248 --pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~ 324 (486)
++++|+++|++||+++++|++|+......+...........--.+..+++|.++.| ..+|+++... +.+.+....
T Consensus 185 ~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~-~~~~~~~~~- 262 (391)
T PRK07309 185 REQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPA-EFTAQLIKS- 262 (391)
T ss_pred HHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCH-HHHHHHHHH-
Confidence 58999999999999999999997644311111111111111125567799998744 3477777653 333322111
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
..+... ....+...++...+ +........++..+.++++.+.|++. ++++. +|..+
T Consensus 263 ~~~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~p~gg 320 (391)
T PRK07309 263 HQYLVT--------------------AATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL-GFKII-KPDGA 320 (391)
T ss_pred Hhhccc--------------------CCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCee
Confidence 111110 01122222333333 22223344556667788899999887 67765 44445
Q ss_pred EEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 403 VVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 403 ~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+.+ ++.+.. ......+.+++. +.|+.+..+..+. +..++|++++. +.+++++.++.|.++
T Consensus 321 ~~~~~~l~~~~------------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~~i~~l~~~ 385 (391)
T PRK07309 321 FYIFAKIPAGY------------NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA---SMETIKEAMKRLKEY 385 (391)
T ss_pred EEEEEECCCCC------------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC---CHHHHHHHHHHHHHH
Confidence 4433 333210 001234554443 5676544443332 35799999863 467999999999988
Q ss_pred HHHH
Q 038818 479 LDGI 482 (486)
Q Consensus 479 ~~~l 482 (486)
++++
T Consensus 386 ~~~~ 389 (391)
T PRK07309 386 MEEH 389 (391)
T ss_pred HHhh
Confidence 8664
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=170.91 Aligned_cols=292 Identities=13% Similarity=0.071 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
.+..++++.+++++|.+. .+++++|+++++.++.+... +++.|+++...|.+...+++..
T Consensus 61 ~~~~~l~~~la~~~~~~~---------~i~~~~G~~~~~~~l~~~~~-----------~gd~v~~~~~~~~~~~~~~~~~ 120 (360)
T TIGR00858 61 PLHEELEEELAEWKGTEA---------ALLFSSGYLANVGVISALVG-----------KGDLILSDALNHASLIDGCRLS 120 (360)
T ss_pred HHHHHHHHHHHHHhCCCC---------EEEECchHHHHHHHHHHhCC-----------CCCEEEEEccccHHHHHHHHhc
Confidence 444556677788777542 35556668887765544322 5677888899999999999999
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|+ +++.++ .+|+++|++.+++... ..+.+|+.....+++|.+.|+++|.++|+++|+++++|++|+.+
T Consensus 121 g~---~~~~~~-------~~d~~~l~~~~~~~~~--~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~ 188 (360)
T TIGR00858 121 GA---RVRRYR-------HNDVEHLERLLEKNRG--ERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTG 188 (360)
T ss_pred CC---ceEEec-------CCCHHHHHHHHHHccc--CCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECccccc
Confidence 98 887775 2589999999875320 12356777778899999999999999999999999999999744
Q ss_pred hccCccc-hhhhcCC--CCCCceeeccccccCCCCcceEEEeeCchHHHHHhc-CCcccccCccCCCCCccCCCCccccC
Q 038818 273 ACICPEF-RHFIDGI--EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALS-TNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 273 ~~~~~~~-~~~~~~~--~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
....... .....++ ...|.+..+++|+++.+ | |+++.+ ++... .+. ....+. ...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~-g-G~~~~~-~~~~~-~~~~~~~~~~-----------------~~~ 247 (360)
T TIGR00858 189 VLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY-G-AYVAGS-QALID-YLINRARTLI-----------------FST 247 (360)
T ss_pred CcCCCCCchHHhcCCCccCCcEEEEechhhhhcc-C-cEEEcC-HHHHH-HHHHhCccce-----------------ecC
Confidence 3211100 0011122 25678888999999763 3 665543 33332 221 111111 011
Q ss_pred CCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 349 SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 349 sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
+.. ....++..++..+ +...++.++..++++++.+.|+++ ++++. ++..+++.+.+.. ...
T Consensus 248 ~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~--------------~~~ 309 (360)
T TIGR00858 248 ALPPAVAAAALAALELI--QEEPWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGD--------------NAS 309 (360)
T ss_pred CCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCC--------------HHH
Confidence 111 1112223334332 223566788899999999999887 57765 4455666666542 112
Q ss_pred HHHHHHHHHhcCcEEEeeee---ECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLYVSHGM---VAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~---~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+++.+.|.++|+.+..... ..+..++|+++. ..++++|+++++++|+
T Consensus 310 ~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~-~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 310 ALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLS-AAHTPGDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEc-CCCCHHHHHHHHHhhC
Confidence 34677788888875432211 123468999995 4567889999998873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-18 Score=170.93 Aligned_cols=326 Identities=12% Similarity=0.112 Sum_probs=205.6
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|....+...+.+.+.+|+++++|.+... ....++|+|+++++..++.+...
T Consensus 45 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~----~~~i~it~g~~~al~~~~~~l~~-------- 112 (384)
T PRK12414 45 PALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDP----ASEVTVIASASEGLYAAISALVH-------- 112 (384)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEECChHHHHHHHHHHhcC--------
Confidence 334444443332222345555567889999999999999985210 01589999999988766665433
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV- 246 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i- 246 (486)
+++.|+++..+|......++..|. +++.+|+++ +++.+|++.|++++++. +.+|+++.++|+||.+
T Consensus 113 ---~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~-~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~ 179 (384)
T PRK12414 113 ---PGDEVIYFEPSFDSYAPIVRLQGA---TPVAIKLSP-EDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVF 179 (384)
T ss_pred ---CCCEEEEeCCCccchHHHHHHcCC---EEEEEecCc-cccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCC
Confidence 667788899999888888999999 999999875 35789999999988643 3467788999999997
Q ss_pred --CCchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 247 --DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 247 --dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
+++++|+++|++||+++++|++|.-........... +.....--.+..++.|.++.| .-+|+++..++ ... .+
T Consensus 180 s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~-l~~-~l 257 (384)
T PRK12414 180 SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAE-LMD-EI 257 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHH-HHH-HH
Confidence 678999999999999999999997543211111111 111111125677789999744 56788876543 322 12
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
.....+. ......+..+++...+.. ..+.+..+...+.++.+.+.|++. ++++. ++.
T Consensus 258 ~~~~~~~--------------------~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~ 315 (384)
T PRK12414 258 RKVHQFM--------------------VFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFELL-PSE 315 (384)
T ss_pred HHHHhhe--------------------ecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCC
Confidence 1100000 001122333333333321 234455667778888899999887 67764 555
Q ss_pred eeEEEE-EeecCCCCCCCCCCccchHHHHHHHH-HHHHhcCcEEEeeeeEC--C--EeEEEEEecCCCCcHHHHHHHHHH
Q 038818 401 FAVVCF-RVLPSASGLGDGKANEGANELNRKLL-ESINASGQLYVSHGMVA--G--IYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 401 ~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~~~--~--~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
.+.+.| ++.+.. .. ...++. +.+.+.|+.+..+..+. + .+++|+++.. +++++++.++.
T Consensus 316 gg~~~~~~~~~~~--------~~----~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~---~~~~~~~~~~r 380 (384)
T PRK12414 316 GSFFMLARFRHFS--------DE----SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK---DDATLVEGARR 380 (384)
T ss_pred cceEEEEcccccC--------CC----CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC---CHHHHHHHHHH
Confidence 555555 443210 00 012333 44556788655544332 2 4689999963 47788888877
Q ss_pred HHH
Q 038818 475 VQE 477 (486)
Q Consensus 475 l~~ 477 (486)
|.+
T Consensus 381 l~~ 383 (384)
T PRK12414 381 LCS 383 (384)
T ss_pred Hhh
Confidence 764
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-18 Score=169.81 Aligned_cols=332 Identities=15% Similarity=0.120 Sum_probs=202.9
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
+..+.+.+..... ....|....+..++.+.+.+++.+ .|.+.. ....++|+|+++++..++.....
T Consensus 45 ~~~~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~-----~~~i~~t~G~~~al~~~~~~l~~------- 110 (397)
T PRK07568 45 PEVFFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYKK-WGIDVE-----PDEILITNGGSEAILFAMMAICD------- 110 (397)
T ss_pred CHHHHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHHH-hCCCCC-----cceEEEcCChHHHHHHHHHHhcC-------
Confidence 3445555554432 223454444566777777777763 443221 12689999999998776655432
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcc-cCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFT-LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~-~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++...|......++..|+ +++.++++.++.+. .++++|++++++.+ .+|+++.++|++|.
T Consensus 111 ----~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~g~~~~~~~~l~~~~~~~~------~~v~i~~p~NPtG~ 177 (397)
T PRK07568 111 ----PGDEILVPEPFYANYNGFATSAGV---KIVPVTTKIEEGFHLPSKEEIEKLITPKT------KAILISNPGNPTGV 177 (397)
T ss_pred ----CCCEEEEecCCCccHHHHHHHcCC---EEEEeecCcccCCCCCCHHHHHHhcCccc------eEEEEECCCCCCCc
Confidence 566777777777667777888899 99999986433334 36899998886543 36788889999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCC-CC--ceeeccccccCC-CCcceEEEeeCchHHH
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEG-AD--SFSLNAHKWFFT-TLDCCCLWVKNPNALI 318 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~-aD--si~~~~hK~l~~-p~~~g~~~~~~~~~~~ 318 (486)
+-+ +++|+++|+++|+++++|++|+.+..-.+...... .+.. .+ .+..+.+|.++. ...+|+++..++....
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~-~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~ 256 (397)
T PRK07568 178 VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSAL-SLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIA 256 (397)
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChh-hcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHH
Confidence 864 78999999999999999999976532111111111 1111 22 445678999874 5568888876655443
Q ss_pred HHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 319 KALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 319 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.........+ ....+...++...+ +.+.+++..+...+.++.+.+.|++++++.+.
T Consensus 257 ~~~~~~~~~~----------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 314 (397)
T PRK07568 257 AAMKLCQARL----------------------SPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCE 314 (397)
T ss_pred HHHHHhhccC----------------------CCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 2211100000 01122222222222 34567777778888899999999988777654
Q ss_pred cCCCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHH--HhcCcEEEeeeeE---C--CEeEEEEEecCCCCcHHHH
Q 038818 397 APRNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESI--NASGQLYVSHGMV---A--GIYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 397 ~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~g~~~~~~~~~---~--~~~~lR~~~~~~~tt~~di 468 (486)
.|..+.+ .+++... ...++.+.+.++. .+.|+.+.++..+ . +..++|+++.. +++++
T Consensus 315 -~p~g~~~~~~~l~~~-----------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~---~~~~~ 379 (397)
T PRK07568 315 -KPKGAFYIIAKLPVD-----------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL---NEEDL 379 (397)
T ss_pred -CCCcceEEEEecCCC-----------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC---CHHHH
Confidence 4444443 3444321 1123333332221 1246654443333 1 24689999852 46799
Q ss_pred HHHHHHHHHHHHHHh
Q 038818 469 IAAWKVVQEKLDGIL 483 (486)
Q Consensus 469 d~~i~~l~~~~~~l~ 483 (486)
++.++.|.+++++..
T Consensus 380 ~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 380 KRAMEILKEALEKYN 394 (397)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=176.05 Aligned_cols=285 Identities=19% Similarity=0.184 Sum_probs=190.2
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|...++|+ .+++++|.+ ..+++++|++|+..++.+... +++.|+++...|.+..
T Consensus 38 ~~p~~~~le~----~la~l~g~~---------~a~~~~sG~~Ai~~~l~~l~~-----------~gd~Vl~~~~~y~~~~ 93 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGE---------AALAFSSGMAAISTVLLALLK-----------AGDHVVASDDLYGGTY 93 (369)
T ss_pred CChhHHHHHH----HHHHHHCCC---------CEEEEcCHHHHHHHHHHHHcC-----------CCCEEEECCCCcchHH
Confidence 4455556665 567777754 458889999999888776643 5667888888887654
Q ss_pred H----HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 K----AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~----a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
. .+...|+ ++..++.+ |++++++++++. +.+|+++.++|++|.+.|+++|+++|++||++
T Consensus 94 ~~~~~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~ 157 (369)
T cd00614 94 RLFERLLPKLGI---EVTFVDPD-------DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAELAHEHGAL 157 (369)
T ss_pred HHHHHHHhhcCe---EEEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCE
Confidence 3 4556677 88887653 688899888643 34788899999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||++|+.+....+ .. .++|.++.+++|+++++. ..|+++.++++...+... ...++
T Consensus 158 livD~t~~~~~~~~~-~~------~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~-~~~~~------------ 217 (369)
T cd00614 158 LVVDNTFATPYLQRP-LE------LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRF-LRLAL------------ 217 (369)
T ss_pred EEEECCCcchhcCCh-hh------hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHH-HHHhh------------
Confidence 999999987644221 11 178999999999998764 367777666344322211 10010
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~ 403 (486)
+-......+|+.++.+ +.+..++++..++++++.+.|+++|+++.+.-| ..++
T Consensus 218 --------g~~~~p~~a~~~l~~l--~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i 287 (369)
T cd00614 218 --------GTILSPFDAWLLLRGL--KTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGV 287 (369)
T ss_pred --------CCCCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceE
Confidence 1112345566665544 667778899999999999999999877543322 3678
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--cCc-------EEEeee--eE----------CC--EeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINA--SGQ-------LYVSHG--MV----------AG--IYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~-------~~~~~~--~~----------~~--~~~lR~~~~~ 460 (486)
++|.+.+. .+...++.+.|.- .+. +...+. .. .| .+.+|+|++-
T Consensus 288 ~s~~l~~~-------------~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl 354 (369)
T cd00614 288 FSFELKGG-------------LEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI 354 (369)
T ss_pred EEEEeCCC-------------HHHHHHHHHcCCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc
Confidence 99988642 2333455554321 111 011111 00 12 4689999953
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~ 479 (486)
||+|.+++.|++.+
T Consensus 355 -----E~~~dl~~dl~~al 368 (369)
T cd00614 355 -----EDVEDLIADLEQAL 368 (369)
T ss_pred -----CCHHHHHHHHHHhh
Confidence 47888888888764
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-18 Score=169.86 Aligned_cols=309 Identities=12% Similarity=0.089 Sum_probs=192.4
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..|....+..++.+.+.+|+.+.+|.+.+. ....++|+|+++++..++.+... +++.|+++..+|
T Consensus 67 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~----~~~i~vt~G~~~al~~~~~~~~~-----------~gd~Vlv~~P~y 131 (394)
T PRK05942 67 HGYPPFEGTASFRQAITDWYHRRYGVELDP----DSEALPLLGSKEGLTHLALAYVN-----------PGDVVLVPSPAY 131 (394)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHCCCcCC----CCeEEEccChHHHHHHHHHHhCC-----------CCCEEEEcCCCC
Confidence 455544456789999999999888864321 01367899999988776655432 677888999999
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHh
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRY 259 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~ 259 (486)
......+...|+ +++.+|++.++++.+|+++|++.+.+. +.+|+++.++||||.+-+ +++|.++|+++
T Consensus 132 ~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~ 202 (394)
T PRK05942 132 PAHFRGPLIAGA---QIYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIVAFARKY 202 (394)
T ss_pred cchHHHHHHcCC---EEEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 988888888999 999999986555789999999988643 347777889999999977 88999999999
Q ss_pred CceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 260 SIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 260 g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
|+++++|++|+.+.......... +.+.........++.|.++ .+..+|+++.. +.... .+.....+...
T Consensus 203 ~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~-~~l~~-~l~~~~~~~~~------ 274 (394)
T PRK05942 203 EIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN-RHIIQ-GLRTLKTNLDY------ 274 (394)
T ss_pred CeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecC-HHHHH-HHHHHHhhccc------
Confidence 99999999997544211111111 1111122344566789886 44568888764 33332 22110000000
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEE-EEeecCCC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVC-FRVLPSAS 413 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~-f~~~~~~~ 413 (486)
+ ...+...++...+ ..+.+++..++..++.+++.+.|++. ++++. ++..+++. +.+.+..
T Consensus 275 ------------~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~~~~f~~~~~~~~~- 337 (394)
T PRK05942 275 ------------G--IFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL-GWNIP-PTKATMYLWVPCPVGM- 337 (394)
T ss_pred ------------C--CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeeEEEEECCCCC-
Confidence 0 0111112222222 24556677777788888999999876 67765 44555443 4443210
Q ss_pred CCCCCCCccchHHHHHHHHHH-HHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLES-INASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
+ ..++..+ +.++|+.+..+..+. +..++|+++.. +.+.+.+.++.|.
T Consensus 338 -----------~--~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~---~~~~l~~~l~~l~ 387 (394)
T PRK05942 338 -----------G--STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA---DCDRLGEALDRLK 387 (394)
T ss_pred -----------C--HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC---CHHHHHHHHHHHH
Confidence 0 1233333 345687544444332 35799999942 3334444444443
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=174.15 Aligned_cols=325 Identities=10% Similarity=0.062 Sum_probs=209.3
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|....+...+++.+.+++.+++|.+... ....++|+|+++|+..++.....
T Consensus 47 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~----~~~i~~t~G~~~al~~~~~~~~~--------- 113 (386)
T PRK09082 47 YLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA----DSEITVTAGATEALFAAILALVR--------- 113 (386)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCCHHHHHHHHHHHHcC---------
Confidence 34455555443333456555667889999999999999875321 01588999999998877765533
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc--
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-- 246 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-- 246 (486)
+++.|+++..+|.++..+++..|. +++.+|+++. ++.+|++++++++++. +.+|+++.++|+||.+
T Consensus 114 --~gd~Vli~~p~y~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~ 181 (386)
T PRK09082 114 --PGDEVIVFDPSYDSYAPAIELAGG---RAVRVALQPP-DFRVDWQRFAAAISPR------TRLIILNTPHNPSGTVWS 181 (386)
T ss_pred --CCCEEEEeCCCchhhHHHHHHcCC---EEEEEecCcc-cccCCHHHHHHhcCcc------ceEEEEeCCCCCCCcCCC
Confidence 667788899999999999999999 9999999753 5799999999988643 3467778899999977
Q ss_pred -CCchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhc
Q 038818 247 -DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 247 -dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~ 322 (486)
+++++|.++|++||+++++|.+|+............ +.+...-..+..++.|.++.| ..+|+++..+ +.+. .+.
T Consensus 182 ~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~-~l~~-~~~ 259 (386)
T PRK09082 182 AADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPA-ALSA-EFR 259 (386)
T ss_pred HHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCH-HHHH-HHH
Confidence 778999999999999999999996543321111111 112222335566789999744 4578777643 3322 221
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
....+.. .....+...++...+ ..+.++++.+...++.+++.+.|++. ++++. ++.
T Consensus 260 ~~~~~~~--------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~ 317 (386)
T PRK09082 260 KVHQYNT--------------------FTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RFKLL-PCE 317 (386)
T ss_pred HHHhhhc--------------------CCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCC
Confidence 1111100 011222222222222 34556677777788889999999885 67764 455
Q ss_pred eeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC----CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 401 FAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA----GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 401 ~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~----~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
.+.+.+ ++.... .. + ..++.+.+. +.|+.+..+..+. +.+++|++++. +++++++.++.
T Consensus 318 g~~~~~~~~~~~~--------~~--~--~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~---~~~~l~~~~~r 382 (386)
T PRK09082 318 GTYFQLVDYSAIS--------DL--D--DVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK---QEETLDAAAER 382 (386)
T ss_pred eeEEEEEeccccC--------CC--C--HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC---CHHHHHHHHHH
Confidence 555444 553210 00 1 234555543 5566544433332 24689999953 57788888888
Q ss_pred HHH
Q 038818 475 VQE 477 (486)
Q Consensus 475 l~~ 477 (486)
|++
T Consensus 383 l~~ 385 (386)
T PRK09082 383 LCQ 385 (386)
T ss_pred Hhh
Confidence 765
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-18 Score=172.47 Aligned_cols=339 Identities=12% Similarity=0.060 Sum_probs=209.1
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|....+..++.+.+.+++++.+|.+.. ....++|+|+++|+..++.+...
T Consensus 50 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~~~~--------- 115 (402)
T PRK06107 50 HIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYA-----DNEITVGGGAKQAIFLALMATLE--------- 115 (402)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-----hhhEEEeCCHHHHHHHHHHHhcC---------
Confidence 3455555555433344555455678888999999998887532 12689999999988777654322
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
+++.|+++...++....++...|. .++.++++.++++.+|+++|++++.+. +.+|+++.++|+||.+-+
T Consensus 116 --~gd~vl~~~p~y~~y~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s 184 (402)
T PRK06107 116 --AGDEVIIPAPYWVSYPDMVLANDG---TPVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSNPTGAVYS 184 (402)
T ss_pred --CCCEEEEecCCCcCHHHHHHHcCC---EEEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCCCCCcCcC
Confidence 567788888877777777777777 788888864445789999999988642 346778889999998865
Q ss_pred ---chHHHHHHHHh-CceEEeeccccchhccCccchhhh---cCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 249 ---LGPLCDIAKRY-SIWVHVDAAYAGSACICPEFRHFI---DGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 249 ---l~~I~~i~~~~-g~~lhvD~a~g~~~~~~~~~~~~~---~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
+++|+++|+++ |+++++|.+|+....-.+...... .+...--.+..+++|.++.| .-+|+++..+ .... .
T Consensus 185 ~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~-~~~~-~ 262 (402)
T PRK06107 185 RAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA-DLIA-A 262 (402)
T ss_pred HHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCH-HHHH-H
Confidence 67778889998 999999999975322111111111 11111123445679999744 4578776543 3322 2
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
+.....+. +.....+..+++.+.+ +...+++..+...+.++.+.+.|++++++++. +
T Consensus 263 ~~~~~~~~--------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~-~ 321 (402)
T PRK06107 263 INKLQSQS--------------------SSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCL-V 321 (402)
T ss_pred HHHHHHhc--------------------ccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-C
Confidence 21111000 0011223333444333 34556677777788888899999888777765 4
Q ss_pred CCeeEEEE-EeecC-CCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 399 RNFAVVCF-RVLPS-ASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 399 ~~~~~v~f-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
|+.+.+.| ++... ...... ... ......+.+.+ .+.|+.+.++..+...+++|+++.. +++++++.++.|
T Consensus 322 p~gg~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~---~~e~l~~~l~~l 394 (402)
T PRK06107 322 PDGAFYLYVNCAGLIGKTTPE---GKV-LETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT---SLETLEEACARI 394 (402)
T ss_pred CCcceEEeeeccccccccccc---ccC-CCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC---CHHHHHHHHHHH
Confidence 55555544 33210 000000 000 00122344444 4568765555444445799999963 477999999999
Q ss_pred HHHHHHH
Q 038818 476 QEKLDGI 482 (486)
Q Consensus 476 ~~~~~~l 482 (486)
.+.++++
T Consensus 395 ~~~l~~~ 401 (402)
T PRK06107 395 ERAVAAL 401 (402)
T ss_pred HHHHHhc
Confidence 9888765
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=171.98 Aligned_cols=322 Identities=12% Similarity=0.084 Sum_probs=195.0
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
..++...++|++ +++++|.+ ..++++|||+|+..++.+..-. +++.|+++..+|.+.
T Consensus 26 ~~g~~~~~le~~----la~~~g~~---------~~v~~~sgt~al~~~l~al~~~----------~Gd~Viv~~~~~~~~ 82 (380)
T TIGR03588 26 TQGPTVPAFEEA----LAEYVGAK---------YAVAFNSATSALHIACLALGVG----------PGDRVWTTPITFVAT 82 (380)
T ss_pred cCChhHHHHHHH----HHHHHCCC---------eEEEEcCHHHHHHHHHHHcCCC----------CCCEEEeCCcchHHH
Confidence 345555556554 66667764 2466778899987777654211 567899999999999
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
..++...|+ +++.++++++ ++.+|+++|++++++.. ...+.+|+.++ .+|...|+++|.++|++||+++++
T Consensus 83 ~~~~~~~G~---~~~~~~~~~~-~~~~d~~~l~~~i~~~~--~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~ 153 (380)
T TIGR03588 83 ANCALYCGA---KVDFVDIDPD-TGNIDEDALEKKLAAAK--GKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIE 153 (380)
T ss_pred HHHHHHcCC---EEEEEecCCC-cCCcCHHHHHHHhhccc--CCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEE
Confidence 999999999 9999999753 57899999999997320 01133555543 579999999999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccc--cccCCCCcceEEEeeCchHHHHHhcCCc-ccccCccCC---CCCcc
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAH--KWFFTTLDCCCLWVKNPNALIKALSTNP-EFLRNKASD---SKQVV 339 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~h--K~l~~p~~~g~~~~~~~~~~~~~~~~~~-~y~~~~~~~---~~~~~ 339 (486)
|++|+.+..... +. +......|..++++| |++..+ ..|+++++++....+...... +........ .....
T Consensus 154 D~a~a~g~~~~~--~~-~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 229 (380)
T TIGR03588 154 DASHALGAEYGG--KP-VGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPW 229 (380)
T ss_pred ECCCcccCccCC--Ee-CCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcc
Confidence 999976543221 11 111124599999988 899876 456677777655432211000 000000000 00000
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC-----eeEEEEEeecCCCC
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN-----FAVVCFRVLPSASG 414 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-----~~~v~f~~~~~~~~ 414 (486)
.+....+....+...+.....+.. .+.+.++.++..++++++.+.|+++|++++..++. ...+.+.+....
T Consensus 230 ~~~~~~~g~n~~m~~l~aa~g~~q--L~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 305 (380)
T TIGR03588 230 YYEQQELGFNYRMTDIQAALGLSQ--LKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF-- 305 (380)
T ss_pred eeeeeccccccCccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC--
Confidence 000000111112222322222222 35678899999999999999999998777554321 122333332210
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEE---eeee----E----C----------CEeEEEEEecCCCCcHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYV---SHGM----V----A----------GIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~----~----~----------~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
.....++.+.|.++|+..- .+.. + . ....+++.+ ++..+++||+++++
T Consensus 306 ----------~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~-~~~l~~~dv~~i~~ 374 (380)
T TIGR03588 306 ----------GCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPL-HPALTLEQQQRVVE 374 (380)
T ss_pred ----------CCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCC-CCCCCHHHHHHHHH
Confidence 0113456666777776321 1100 0 0 014567665 67889999999999
Q ss_pred HHHHH
Q 038818 474 VVQEK 478 (486)
Q Consensus 474 ~l~~~ 478 (486)
.|+++
T Consensus 375 ~l~~~ 379 (380)
T TIGR03588 375 TLRKV 379 (380)
T ss_pred HHHHh
Confidence 99876
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-18 Score=169.03 Aligned_cols=329 Identities=12% Similarity=0.040 Sum_probs=206.9
Q ss_pred HHHHHHHHHhhc-CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGF-NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~-n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+.+.+...+ +.....|...++..++++.+.+++.+..|.... ....++|+|+++++..++.+...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~------ 112 (386)
T PRK07550 44 PPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAIS-----PEQVHITSGCNQAFWAAMVTLAG------ 112 (386)
T ss_pred CHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----cceEEEecCcHHHHHHHHHHhcC------
Confidence 334455554433 222334554556789999999999998886432 12688999999888766655432
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..++......++..|+ +++.++.+++..+.+|+++|++++++.+ .+|+++.++|++|.
T Consensus 113 -----~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~l~~~~~~~~------~~v~~~~P~NPtG~ 178 (386)
T PRK07550 113 -----AGDEVILPLPWYFNHKMWLDMLGI---RPVYLPCDEGPGLLPDPAAAEALITPRT------RAIALVTPNNPTGV 178 (386)
T ss_pred -----CCCEEEEcCCCCcchHHHHHhcCC---EEEEEecCCCcCCCCCHHHHHHHhcccC------cEEEEeCCCCCCCc
Confidence 677788898888888888899999 9999999754457789999999997543 35677789999998
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC-CC-CceeeccccccC-CCCcceEEEeeCchHHHH
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GA-DSFSLNAHKWFF-TTLDCCCLWVKNPNALIK 319 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~a-Dsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~ 319 (486)
+-| +++|+++|++||+++++|++|+.+..........+.... .. ..+..+++|.++ ....+|+++..++ .+.+
T Consensus 179 ~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~-~~~~ 257 (386)
T PRK07550 179 VYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPA-RIAE 257 (386)
T ss_pred ccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHH-HHHH
Confidence 865 789999999999999999999764221111111111111 11 234678999987 4456888877543 3222
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--VANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
... +.... +. ....+..++..+.+. .+..++..++..+.++.+.+.|++++++.+.
T Consensus 258 ~~~----~~~~~-------------~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~- 315 (386)
T PRK07550 258 IEK----FMDTV-------------AI----CAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWELL- 315 (386)
T ss_pred HHH----HHhhc-------------cc----CCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeC-
Confidence 111 11000 00 012222333333322 3445566677778888999999887666543
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
++....+.+++.... ....++.+++. +.|+.+..+..+. +..++|+++.. .++++++++++.
T Consensus 316 ~~g~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~~~~~~~~~ 380 (386)
T PRK07550 316 ASGAYFAYVRHPFPD-------------RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN--ADVAGIGELVER 380 (386)
T ss_pred CCceEEEEecCCCCC-------------CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec--CCHHHHHHHHHH
Confidence 333333444443211 01245666654 4677544433332 35689999953 457799999999
Q ss_pred HHHH
Q 038818 475 VQEK 478 (486)
Q Consensus 475 l~~~ 478 (486)
|.+.
T Consensus 381 l~~~ 384 (386)
T PRK07550 381 LRAF 384 (386)
T ss_pred HHhh
Confidence 8775
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-18 Score=170.20 Aligned_cols=340 Identities=11% Similarity=0.038 Sum_probs=208.4
Q ss_pred HHHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+.+.+...+... ...|...+...++.+.+.+++.+. |.+.. ....++|+|+++++..++.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~-----~~~i~~t~G~~~al~~~~~~l~~------ 117 (401)
T TIGR01264 50 DPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIE-----ADDVVLCSGCSHAIEMCIAALAN------ 117 (401)
T ss_pred CHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCC-----HHHEEECcChHHHHHHHHHHhCC------
Confidence 344455555544432 234555556677777777777653 32211 12688999999998777665533
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..++..+...++..|+ +++.++++.++++.+|++.|++++++.+ .+|+++.++|+||.
T Consensus 118 -----~gd~v~i~~P~y~~~~~~~~~~g~---~v~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~NPtG~ 183 (401)
T TIGR01264 118 -----AGQNILVPRPGFPLYETLAESMGI---EVKLYNLLPDKSWEIDLKQLESLIDEKT------AALIVNNPSNPCGS 183 (401)
T ss_pred -----CCCEEEEeCCCChhHHHHHHHcCC---EEEEeecCCccCCCCCHHHHHHHhccCc------eEEEEcCCCCCCCC
Confidence 556777888888888889999999 9999998754467999999998876432 36788889999999
Q ss_pred cC---CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCC-ceeeccccccC-CCCcceEEEeeCch-HHHH
Q 038818 246 VD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD-SFSLNAHKWFF-TTLDCCCLWVKNPN-ALIK 319 (486)
Q Consensus 246 id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aD-si~~~~hK~l~-~p~~~g~~~~~~~~-~~~~ 319 (486)
+- ++++|+++|+++|+++++|++|..+............-..... .++.++.|.++ ...-+|+++..++. .+.+
T Consensus 184 ~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~ 263 (401)
T TIGR01264 184 VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRD 263 (401)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHH
Confidence 85 4889999999999999999999765432111111111111112 45667899744 55568988876421 1111
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
....... +.... + ....+...++...+ ..+.+++..+...+..+++.+.|++++++.+.
T Consensus 264 ~~~~~~~-~~~~~-----------~------~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~ 325 (401)
T TIGR01264 264 IRDGLVK-LSQRI-----------L------GPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPV 325 (401)
T ss_pred HHHHHHH-Hhhcc-----------C------CCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 1100000 00000 0 00112222222222 24567777788888889999999988777654
Q ss_pred cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 397 APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 397 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
.+.....+.+.+.....+ + .. + ..++.+.+. +.|+.+..+..+...+++|++++. .++++++.++.|
T Consensus 326 ~p~~g~f~~~~~~~~~~~--~---~~--~--~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~---~~~~l~~~l~rl 393 (401)
T TIGR01264 326 MPSGAMYMMVGIEMEHFP--E---FK--N--DVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTV---PVVMMEEACSRI 393 (401)
T ss_pred CCCeeeEEEEEecccccC--C---CC--C--HHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcC---CHHHHHHHHHHH
Confidence 344434444454321000 0 00 1 234566654 568765544444446799999953 467999999999
Q ss_pred HHHHHHH
Q 038818 476 QEKLDGI 482 (486)
Q Consensus 476 ~~~~~~l 482 (486)
.+.++++
T Consensus 394 ~~~~~~~ 400 (401)
T TIGR01264 394 QEFCERH 400 (401)
T ss_pred HHHHhcc
Confidence 8887653
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-18 Score=168.31 Aligned_cols=322 Identities=12% Similarity=0.032 Sum_probs=202.2
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
+.+.+..... ....|....+...+.+.+.+|+.+..|.+.+. . .+++|+|+++++..++.+..+.
T Consensus 18 ~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~~Iiit~Gs~~ai~~~~~~~~~~-------- 83 (350)
T TIGR03537 18 IRKALIDAVP-EVSQYPSALGTKALREAISGWFERRFGVKLDP-----DAQVLPSAGSKEAIFHFPLVFIDP-------- 83 (350)
T ss_pred HHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CCcEEEcCChHHHHHHHHHHHcCC--------
Confidence 3444443332 23346544456789999999999888865331 2 6899999999887665544321
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
|.+++.|+++..++.....+++.+|+ +++.+|+++.+.+.+|++++++++.+.+ .+++++.++|+||.+-|
T Consensus 84 g~~~d~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~ 154 (350)
T TIGR03537 84 EEDRRRVIFGTPGYPVYERGALFAGG---EPTAVKLKKEDGFLLRLEKVEKSILEET------KIVWINYPHNPTGATAP 154 (350)
T ss_pred CCCCceEEEcCCCCcchHHHHHhcCC---EEEEcccCcccCCccCHHHHHHhhhhcc------EEEEEeCCCCCcCcccC
Confidence 11235788899999999999999999 9999999743456799999999987643 46778889999999877
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCC-CCceeeccccccCCC-CcceEEEeeCchHHHHHhcC
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEG-ADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALST 323 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~-aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~ 323 (486)
+++|+++|++||+++++|++|+...... ...... .... -..+..+++|.++.| .-.|+++. ++.........
T Consensus 155 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~-~~~~~~~i~~~s~SK~~g~~GlRiG~~~~-~~~~~~~~~~~ 231 (350)
T TIGR03537 155 RSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSAL-EVGIENVLAFHSLSKRSGMTGYRSGFVAG-DEKLISFLRKL 231 (350)
T ss_pred HHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchh-hcCcCCEEEEeecccccCCccccceeeec-CHHHHHHHHHH
Confidence 8899999999999999999997543211 111111 1111 124455789998654 34676653 44333222111
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
...+. .+ ...+...++...+ ..+.+++..++..++.+.+.+.|++. ++++. +|..+
T Consensus 232 ~~~~~-------------------~~--~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~g~ 288 (350)
T TIGR03537 232 RANFG-------------------VA--SPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-GLEYL-YPDAT 288 (350)
T ss_pred HHhhc-------------------cC--CCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeE
Confidence 11110 00 0111112222222 23455666777778888888999886 77755 45545
Q ss_pred EEE-EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 403 VVC-FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 403 ~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
.+. +.+.+. ....++.+.|.++|+.+..+..+. +..++|+++. .++++++++++.|++
T Consensus 289 ~~~~~~~~~~--------------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~---~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 289 FYLWVKVPSG--------------IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV---PTLEECEEALRLWER 349 (350)
T ss_pred EEEEEECCCC--------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHhc
Confidence 433 344321 012456777777887554444332 2578999984 356788888887764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-18 Score=168.85 Aligned_cols=325 Identities=13% Similarity=0.087 Sum_probs=201.9
Q ss_pred HHHHHHHHhhcC-CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFN-VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+...+. .....|....+..++.+.+.+|+++.+|.+... ....++|+|+++++..++.+...
T Consensus 45 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~----~~~vi~t~G~~~~l~~~~~~~~~------- 113 (383)
T TIGR03540 45 KHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDP----ETEVLSLIGSKEGIAHIPLAFVN------- 113 (383)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC----CCeEEECCCcHHHHHHHHHHhCC-------
Confidence 334444444332 223445544456788899999999888874321 01467888988888766655432
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..++.....+++.+|. +++.+|+++++.+.+|+++|++++.+. +.+|+++.++||||.+
T Consensus 114 ----~gd~vlv~~P~y~~~~~~~~~~G~---~v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~ 180 (383)
T TIGR03540 114 ----PGDIVLVPDPGYPVYRIGTLFAGG---EPYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAV 180 (383)
T ss_pred ----CCCEEEEeCCCCcchHHHHHhcCC---EEEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCcc
Confidence 677888899999888889999999 999999975434678999999888643 3477778899999999
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
-+ +++|+++|++||+++++|.+|+............ +.+...-..+..++.|.++.| .-+|+++.. ++.....
T Consensus 181 ~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~-~~l~~~~ 259 (383)
T TIGR03540 181 APLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGN-ADLIAGL 259 (383)
T ss_pred CCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCC-HHHHHHH
Confidence 77 7899999999999999999997543211111111 111111224456788998644 347877653 4333322
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
..... +... ....+...++...+ +.+.+++..+...++++.+.+.|++. ++++..
T Consensus 260 ~~~~~-~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~- 316 (383)
T TIGR03540 260 GKVKT-NVDS--------------------GVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEK- 316 (383)
T ss_pred HHHHH-hccc--------------------CCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEecC-
Confidence 11110 0000 00111122222222 34566777778888899999999987 787764
Q ss_pred CCeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+..+. +.+.+.+.. ...++.+.+. +.|+.+..+..+. +.+++|+++.. +++++++.++.
T Consensus 317 ~~~~~~~~~~l~~~~--------------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~~l~~~l~~ 379 (383)
T TIGR03540 317 PKATFYVWVPVPEGY--------------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV---PDERLEEAVAR 379 (383)
T ss_pred CCcceEEEEECCCCC--------------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC---CHHHHHHHHHH
Confidence 44444 344443210 1235666654 4577544433332 24689999952 45577777766
Q ss_pred HHH
Q 038818 475 VQE 477 (486)
Q Consensus 475 l~~ 477 (486)
|.+
T Consensus 380 l~~ 382 (383)
T TIGR03540 380 IKK 382 (383)
T ss_pred Hhh
Confidence 643
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-18 Score=161.47 Aligned_cols=360 Identities=15% Similarity=0.081 Sum_probs=240.3
Q ss_pred CCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHH-------HHHHhhcCCCccccccChhhHHHHHHHHHH
Q 038818 49 NPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLG-------EMLSSGFNVVGFNWMSSPAATELENIVMDW 121 (486)
Q Consensus 49 ~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~l~~~~n~~~~~~~~~~~~~~le~~~~~~ 121 (486)
.+.++.+++++|++...+|. ..+.|.|.-.-+...|+++. +|+++ |.+++..-+++.....+|.+ .+
T Consensus 55 ~~~sE~e~l~~l~~ia~kN~---~~~sfiG~GyY~~~~P~vI~rnile~pewyTa-YTPYQpEISQGrLqaLfefQ--tl 128 (450)
T COG0403 55 KPLSEYEALAELKEIASKNK---VFTSFIGAGYYDTYTPPVILRNILENPEWYTA-YTPYQPEISQGRLEALFEFQ--TL 128 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCc---hhhhhccCcccCCcCcHHHHHHhhcCcccccc-CCCCchhhhhHHHHHHHHHH--HH
Confidence 45699999999999877775 45678774433444555554 34453 44555555677777788877 89
Q ss_pred HHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH----cCCCCC
Q 038818 122 LGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI----AGIDPK 197 (486)
Q Consensus 122 l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~----~G~g~~ 197 (486)
+++|.|++.. +..+..++|.+- .|+.+++... +.++..++++...|+......+. +|+
T Consensus 129 v~dLTGm~VA-------NASm~DeaTAaA-EAm~ma~r~~-------k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~--- 190 (450)
T COG0403 129 VADLTGLDVA-------NASMLDEATAAA-EAMLMAKRVT-------KKKRNKFLVPKDVHPQTLDVLRTRAEGLGI--- 190 (450)
T ss_pred HHHHhCCCcc-------cchhhhhHHHHH-HHHHHHHHhh-------cCcCceEEecCCCCHHHHHHHHhhcccCce---
Confidence 9999999986 678899988655 4444443321 11357899999999986555543 345
Q ss_pred CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc-ccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 198 NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT-TVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 198 ~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G-~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.++.+ |.++|+++ ++. ..+.|++..+++ .| .+.++.+|.+.+|++|..++|=+---+..++.
T Consensus 191 ~i~~~~~~-------d~~~l~~~-~~~-----~~~gv~vQyP~~-~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~ 256 (450)
T COG0403 191 EIEVVDAD-------DLDDLESA-DDG-----DVFGVLVQYPNT-FGIVEEDLRALIEAAHSAGALVIVAADPLALGLLK 256 (450)
T ss_pred EEEEeccc-------hhhhhhhc-ccc-----CeEEEEEecCCC-CCccchhHHHHHHHHhhcCCEEEEEechhHhhccC
Confidence 66666543 77888877 321 135677887775 56 67789999999999999887754332333333
Q ss_pred ccchhhhcCCCCCCceeeccccccC----CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc----C
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFF----TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT----L 348 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~----~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~----~ 348 (486)
|... -+||.++.+++.++. +.+-+|+|.++++- .+..|+.+.+...+..+...+. .++| -
T Consensus 257 pPGe------~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~-----~R~mPGRlVG~S~D~~G~~A~r-LaLQTREQH 324 (450)
T COG0403 257 PPGE------FGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEF-----KRQMPGRLVGVSVDAAGKRAFR-LALQTREQH 324 (450)
T ss_pred Cccc------cCCceEEecCcccCCCcCCCCcceeeeeEhHhH-----hhcCCCceeeeeecCCCCchhh-hhHHHHHHH
Confidence 3322 289999999988653 22348889888763 3556777766544434433332 2222 1
Q ss_pred CCCCC------------chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCCCeeEEEEEeecCCCCC
Q 038818 349 SRRFR------------ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPRNFAVVCFRVLPSASGL 415 (486)
Q Consensus 349 sr~~~------------~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~~~~~v~f~~~~~~~~~ 415 (486)
-||.. ++...+++.++|.+|++++.++.++++.+|+++|++.. +++++.+..+..+++++..
T Consensus 325 IRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~----- 399 (450)
T COG0403 325 IRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPE----- 399 (450)
T ss_pred HhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecch-----
Confidence 23322 23334455668999999999999999999999999653 6898877777888888752
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+.+..+.++....|+- +. .+... .+-+++. ..+|++||+.+++++...
T Consensus 400 ----------~~~~~l~~~~~~~G~~-L~--~~~~~-~~~ia~t-Et~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 400 ----------EVAEALLAAAIAGGIN-LR--RVDAD-TVLIALT-ETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ----------hHHHHHHHHHHhcCCc-ee--eecCC-ceEEEee-cccCHHHHHHHHHHHhhh
Confidence 3355666666666652 11 11111 4557774 578889999999998764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=168.73 Aligned_cols=327 Identities=14% Similarity=0.070 Sum_probs=206.0
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|.......++++.+.+|+.+.+|.+.+ ..+.++|+|+++|+..++.+...
T Consensus 47 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~i~~t~G~~~al~~~~~~l~~--------- 112 (388)
T PRK07337 47 PVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVA-----PERIVVTAGASAALLLACLALVE--------- 112 (388)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----hHhEEEecCcHHHHHHHHHHhcC---------
Confidence 3455555555444445665556788999999999988886422 12688999999988766655432
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
+++.|+++..+|.+....++..|. +++.+|+++++++.+|+++|++.+.+.+ .+|+++.++|+||.+-+
T Consensus 113 --~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~ 181 (388)
T PRK07337 113 --RGDEVLMPDPSYPCNRHFVAAAEG---RPVLVPSGPAERFQLTAADVEAAWGERT------RGVLLASPSNPTGTSIA 181 (388)
T ss_pred --CCCEEEEeCCCchhhHHHHHHcCC---EEEEeecCCccCCcCCHHHHHhhcCccc------eEEEEECCCCCCCcCcC
Confidence 567888999999999888899998 9999999764567999999999886533 36777889999999755
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCce-eeccccccCCC-CcceEEEeeCchHHHHHhcC
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSF-SLNAHKWFFTT-LDCCCLWVKNPNALIKALST 323 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi-~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~ 323 (486)
+++|+++|+++|+++++|.+|..... .+...... .+ ..+.+ ..+++|.++.| .-+|+++..++ ... .+..
T Consensus 182 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~-~~-~~~vi~~~S~SK~~~~~G~RiG~~~~~~~-l~~-~l~~ 256 (388)
T PRK07337 182 PDELRRIVEAVRARGGFTIVDEIYQGLSY-DAAPVSAL-SL-GDDVITINSFSKYFNMTGWRLGWLVVPEA-LVG-TFEK 256 (388)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccc-CCCCcChh-hc-cCCEEEEEechhhcCCchhheeeeecCHH-HHH-HHHH
Confidence 78889999999999999999976432 11111111 11 23444 45789999744 45888877543 222 2211
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG---VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
...+... ....+..+++...+. .+.+.+..++..+.++++.+.|+++ ++.+...|.
T Consensus 257 ~~~~~~~--------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~ 315 (388)
T PRK07337 257 LAQNLFI--------------------CASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPD 315 (388)
T ss_pred HHHHhcc--------------------CCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCC
Confidence 1001100 012233333333332 2345666677778888899999886 665433344
Q ss_pred ee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeEC---CEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 401 FA-VVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMVA---GIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 401 ~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~---~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
.+ .+.+.+..... .. .....++.+.+ .+.|+.+.++..+. +.+++|+++.. .++++++.++.|
T Consensus 316 ~g~f~~~~~~~~~~-------~~--~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~---~~~~l~~~l~rl 383 (388)
T PRK07337 316 GAFYVYADCRGVAH-------PA--AGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT---SMSRLEEAVARL 383 (388)
T ss_pred eeEEEEEecccccC-------CC--CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC---CHHHHHHHHHHH
Confidence 33 44445532100 00 00123455554 45677544433332 25799999963 466888888887
Q ss_pred HHH
Q 038818 476 QEK 478 (486)
Q Consensus 476 ~~~ 478 (486)
.++
T Consensus 384 ~~~ 386 (388)
T PRK07337 384 GKL 386 (388)
T ss_pred HHH
Confidence 764
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-18 Score=169.01 Aligned_cols=326 Identities=11% Similarity=0.113 Sum_probs=206.2
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
+.++.+++....+ ....|....+...+.+.+.+|+.+..|++.. ..+.++|+|+++++..++.+...
T Consensus 45 ~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~-----~~~i~it~G~~~al~~~~~~~~~------- 111 (384)
T PRK06348 45 ESIINAAFEDAKK-GHTRYTDSGGDVELIEEIIKYYSKNYDLSFK-----RNEIMATVGACHGMYLALQSILD------- 111 (384)
T ss_pred HHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----hhhEEEcCChHHHHHHHHHHhcC-------
Confidence 4444444443322 2345655555678999999999888776433 13789999999988777666543
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..+|.....++..+|. +++.+|.++++++.+|+++|++++++.+ .+|+++.++||||.+
T Consensus 112 ----~gd~vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~ 178 (384)
T PRK06348 112 ----PGDEVIIHEPYFTPYKDQIEMVGG---KPIILETYEEDGFQINVKKLEALITSKT------KAIILNSPNNPTGAV 178 (384)
T ss_pred ----CCCEEEEeCCCCcchHHHHHHcCC---EEEEecCCcCcCCcCCHHHHHHhhCcCc------cEEEEeCCCCCCCcC
Confidence 567788899999999999999998 8999987543457899999999886432 356677899999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~ 320 (486)
-+ +++|.++|++||+++++|.+|+.+.... ..... +.+...-..+..++.|.++ ...-+|+++..++ ... .
T Consensus 179 ~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~-~~~-~ 255 (384)
T PRK06348 179 FSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDY-IIE-T 255 (384)
T ss_pred CCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCCccccceeeecCHH-HHH-H
Confidence 54 7888999999999999999997654321 11111 1111122245567899998 5566888777533 222 2
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
+.....+.. . ....+...++...+ ..+.++++.+...+.++++.+.|++++++++. +
T Consensus 256 ~~~~~~~~~------------------~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~-~ 314 (384)
T PRK06348 256 AKIINEGIC------------------F--SAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH-P 314 (384)
T ss_pred HHHHHHhcc------------------C--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-c
Confidence 211000000 0 01122222222222 23345566666777788899999888777654 5
Q ss_pred CCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
|..+.+.| ++..... + ..++.+.+. +.|+.+..+..+. +..++|+++. .+++++++.++.
T Consensus 315 p~gg~~~~~~~~~~~~-----------~--~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~al~~ 378 (384)
T PRK06348 315 PKGSIYAFINIKKTGL-----------S--SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT---VGIEVLEEAFNR 378 (384)
T ss_pred CCeeEEEEEecccCCC-----------C--HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec---CCHHHHHHHHHH
Confidence 55565544 4432110 1 234565554 4577555444332 3579999984 366788888888
Q ss_pred HHHH
Q 038818 475 VQEK 478 (486)
Q Consensus 475 l~~~ 478 (486)
|.++
T Consensus 379 l~~~ 382 (384)
T PRK06348 379 IEKM 382 (384)
T ss_pred HHhh
Confidence 7654
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=166.57 Aligned_cols=290 Identities=13% Similarity=0.081 Sum_probs=187.9
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++.+++.+|.+++ +.++|+|+++++..++.+. . ++.+++ ....+..+...++..|+
T Consensus 58 ~~lr~~ia~~~~~~~~-------~i~it~Ga~~~l~~~~~~l-~-----------~g~viv-~~P~y~~~~~~~~~~g~- 116 (356)
T PRK08056 58 RHLHQALARHHQVPAS-------WILAGNGETESIFAVVSGL-K-----------PRRAMI-VTPGFAEYRRALQQVGC- 116 (356)
T ss_pred HHHHHHHHHHhCcChh-------hEEECCCHHHHHHHHHHHh-C-----------CCCEEE-eCCCcHHHHHHHHHcCC-
Confidence 4566778888888765 7889999888876555432 1 333444 44667677788899999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccch
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+++.+|.++++.+.+| +++++.+.+. +.+|+++.++||||.+-+ +++|+++|+++++++++|++|..+
T Consensus 117 --~~~~v~~~~~~~~~~~-~~~~~~~~~~------~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~ 187 (356)
T PRK08056 117 --EIRRYSLREADGWQLT-DAILEALTPD------LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDF 187 (356)
T ss_pred --eEEEEecccccCCCcc-HHHHHhccCC------CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhcc
Confidence 9999998754445666 3444545322 346778999999999988 888999999999999999999664
Q ss_pred hccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
..........+... .-..+..+++|+++ ...-+|+++..++............+ .
T Consensus 188 ~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~-----------------------~ 243 (356)
T PRK08056 188 IPDETGFIPQLADN-PHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPW-----------------------S 243 (356)
T ss_pred CCcchHHHHHhccC-CCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCC-----------------------c
Confidence 32111111112222 24467789999999 55678988876554433221111000 0
Q ss_pred CCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+...++...+ +.+..++..+...+.++++.+.|++++++.+. ++..+.+.+++... ...
T Consensus 244 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~----------------~~~ 306 (356)
T PRK08056 244 INAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCERP----------------DID 306 (356)
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCCC----------------hHH
Confidence 1123333333333 33445666777788899999999988888765 45555544444321 135
Q ss_pred HHHHHHhcCcEEEeeeeECC--EeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVAG--IYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~--~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.|.+.|+.+..+..+.+ .+++|+++. ++++.++++++|+++.+
T Consensus 307 ~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 307 LQRALLTQRILIRSCANYPGLDSRYYRVAIR----SAAENERLLAALRNVLT 354 (356)
T ss_pred HHHHHHHCCeEEEECCCCCCCCCCEEEEEEc----CHHHHHHHHHHHHHHHc
Confidence 66677777875544443322 468999984 45688999999987643
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=171.35 Aligned_cols=327 Identities=11% Similarity=0.102 Sum_probs=209.5
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 184 (486)
|....+...+.+.+.+|+.+.+|.+... ....+++|+|+++++...+.+..+ +++.|+++...+..
T Consensus 82 Y~~~~G~~~LR~aiA~~l~~~~~~~~~v---~~~~Iiit~Ga~~al~~l~~~l~~-----------pGd~Vlv~~P~Y~~ 147 (468)
T PLN02450 82 FQDYHGLPAFKNALAEFMSEIRGNKVTF---DPNKLVLTAGATSANETLMFCLAE-----------PGDAFLLPTPYYPG 147 (468)
T ss_pred CCCCCChHHHHHHHHHHHHHhhCCCCCc---ChHHeEEccChHHHHHHHHHHhCC-----------CCCEEEECCCCCCc
Confidence 4433445678889999998887743110 012689999999987766665543 67788899898888
Q ss_pred HHHHHH-HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhC
Q 038818 185 LQKAAQ-IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYS 260 (486)
Q Consensus 185 ~~~a~~-~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g 260 (486)
+...+. ..|+ +++.||+++++.+.+|+++|++++++..+++..+.+|+++.++||||.+-+ +++|.++|++||
T Consensus 148 ~~~~~~~~~g~---~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~ 224 (468)
T PLN02450 148 FDRDLKWRTGV---EIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKN 224 (468)
T ss_pred hHHHHhhcCCc---EEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCC
Confidence 878777 5788 999999875456789999999999876555656777888899999999855 667888899999
Q ss_pred ceEEeeccccchhccCccchhhhcCC--------CCC--CceeeccccccC-CCCcceEEEeeCchHHHHHhcCCccccc
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGI--------EGA--DSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLR 329 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~--------~~a--Dsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~ 329 (486)
+|+++|.+|+......+.+...+.-+ ... -.+..+..|.++ ...-+|+++..++.... .+.....+.
T Consensus 225 ~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~-~~~~~~~~~- 302 (468)
T PLN02450 225 IHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVS-AATKMSSFG- 302 (468)
T ss_pred cEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHH-HHHHHhhcC-
Confidence 99999999976433221121111100 011 145677899987 66679988876554332 221111110
Q ss_pred CccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEE
Q 038818 330 NKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-----ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVV 404 (486)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v 404 (486)
....+...++...+.. ..+++..++..+..+.+.+.|+++ ++++. ++..+.+
T Consensus 303 ---------------------~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~-~~~~g~f 359 (468)
T PLN02450 303 ---------------------LVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCL-KSNAGLF 359 (468)
T ss_pred ---------------------CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCceEE
Confidence 0112223333333322 235666777778888899999887 77654 4555644
Q ss_pred EE-EeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 405 CF-RVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 405 ~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.| ++.... . ... -+...++.+++.+ .|+.+.++..+. +.+++|++++. .++++++..++.|+++++
T Consensus 360 lwi~l~~~~-~------~~~-~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~--~~~~~l~~~l~ri~~~l~ 429 (468)
T PLN02450 360 CWVDMRHLL-K------SNT-FEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN--MSEETLDLAMKRLKSFVE 429 (468)
T ss_pred EEEEchHhc-C------cCC-chHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC--CCHHHHHHHHHHHHHHHH
Confidence 44 443210 0 000 1112345566654 577544443332 35799999964 356799999999998876
Q ss_pred HHh
Q 038818 481 GIL 483 (486)
Q Consensus 481 ~l~ 483 (486)
+..
T Consensus 430 ~~~ 432 (468)
T PLN02450 430 SDS 432 (468)
T ss_pred hcc
Confidence 543
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=169.53 Aligned_cols=318 Identities=11% Similarity=0.048 Sum_probs=196.1
Q ss_pred cccccChhhHHHHHHHHHHHHHHc--CCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC
Q 038818 103 FNWMSSPAATELENIVMDWLGEML--KLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~--g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~ 180 (486)
..|....+...+.+.+.+++.... +++++ ..++|+|+++++..++.+... +++.|+++..
T Consensus 66 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~-------~i~~t~G~~~~l~~~~~~~~~-----------~gd~Vlv~~p 127 (404)
T PRK09265 66 QGYSDSKGLFSARKAIMQYYQQKGIPDVDVD-------DIYIGNGVSELIVMAMQALLN-----------NGDEVLVPAP 127 (404)
T ss_pred CCCCCCCCcHHHHHHHHHHHhccCCCCCCcc-------cEEEeCChHHHHHHHHHHhCC-----------CCCEEEEeCC
Confidence 345544445677777777775432 34443 688999998888766655432 5667888999
Q ss_pred CchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHH
Q 038818 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAK 257 (486)
Q Consensus 181 ~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~ 257 (486)
+|..+..+++..|. +++.++++.++++.+|+++|++++++. +.+|+++.++|+||.+-+ +++|+++|+
T Consensus 128 ~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~ 198 (404)
T PRK09265 128 DYPLWTAAVSLSGG---KPVHYLCDEEAGWFPDLDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIVEIAR 198 (404)
T ss_pred CCcChHHHHHHcCC---EEEEEecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999998 888888875445789999999988643 336888899999999988 899999999
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCcee-eccccccCCC-CcceEEEee-CchH---HHHHhcCCcccccCc
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFS-LNAHKWFFTT-LDCCCLWVK-NPNA---LIKALSTNPEFLRNK 331 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~-~~~hK~l~~p-~~~g~~~~~-~~~~---~~~~~~~~~~y~~~~ 331 (486)
++|+++++|.+|+.....................++ .++.|.++.| .-+|+++.. ++.. +.+.+... .+..
T Consensus 199 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~-- 275 (404)
T PRK09265 199 QHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMR-- 275 (404)
T ss_pred HCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hccc--
Confidence 999999999999754321111111111111223444 4468999654 457888864 3321 11111100 0000
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-HHHHHHH---HHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE-
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-ANLRNFL---RSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF- 406 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-~g~~~~~---~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f- 406 (486)
. ....+...++...++. +.+.+++ ++..+.++.+.+.|++++++++. +|..+.+.|
T Consensus 276 --------------~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~-~p~~g~~l~~ 336 (404)
T PRK09265 276 --------------L----CANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCV-KPKGALYAFP 336 (404)
T ss_pred --------------c----CCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEEE
Confidence 0 0122233333333321 2222222 35566778888899888787765 444454444
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++.+.... . ......+.+.+.+.|+.+..+..+. +..++|+++. .+++++++.++.|.++++.
T Consensus 337 ~~~~~~~~------~---~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~---~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 337 KLDPKVYP------I---HDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL---PRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred EecccccC------C---CCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHH
Confidence 44431000 0 0012345566667787655444432 3578999983 4677999999999887764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=168.12 Aligned_cols=322 Identities=9% Similarity=0.009 Sum_probs=202.2
Q ss_pred HHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 90 LGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 90 ~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
+.+.+...++.. ...|...++..++.+.+.+|+.+.+|.+.+. . +.++|+|+++++..++.+...
T Consensus 50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~-----~~~i~it~G~~~~l~~~~~~~~~-------- 116 (389)
T PRK08068 50 IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDP-----ETEVAILFGGKAGLVELPQCLMN-------- 116 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CccEEEcCCcHHHHHHHHHHhCC--------
Confidence 455555444432 2345445567889999999998888864321 2 578899998888765554432
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.....+++..|+ +++.+|+++++.+.+|+++|++.+.+. +.+|+++.++||||.+-
T Consensus 117 ---~gd~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPTG~~~ 184 (389)
T PRK08068 117 ---PGDTILVPDPGYPDYLSGVALARA---QFETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYPNNPTGAVA 184 (389)
T ss_pred ---CCCEEEEcCCCCcchHHHHHhcCC---EEEEeecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCCcC
Confidence 667788999999999999999999 999999975445789999999888543 34677788999999996
Q ss_pred Cc---hHHHHHHHHhCceEEeeccccchhccCccchhhhcCC--CCCCceeeccccccCC-CCcceEEEeeCchHHHHHh
Q 038818 248 PL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI--EGADSFSLNAHKWFFT-TLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 248 pl---~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~--~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~~~~~ 321 (486)
+. ++|.++|++|++++++|.+|+............+... ..-..+..++.|.++. ..-+|+++. +++......
T Consensus 185 s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~l~ 263 (389)
T PRK08068 185 TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG-NESVIEAIN 263 (389)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEec-CHHHHHHHH
Confidence 64 6888899999999999999965432111111111111 1122456688999964 445788765 343332211
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
.....+.. + ..+....++...+ +.+.+++..++..+.++++.+.|+++ ++.+. +|
T Consensus 264 ~~~~~~~~-------------------~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-~~ 320 (389)
T PRK08068 264 LLQDHLFV-------------------S--LFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI-GWEVD-AP 320 (389)
T ss_pred HHHhhccC-------------------C--CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CC
Confidence 11111100 0 0111112222222 34566777888888899999999887 67654 55
Q ss_pred CeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 400 NFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 400 ~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
..+.+ .+.+.+.. ...++.+.+.+ .|+.+..+..+. +..++|+++.. .++.+...++.|
T Consensus 321 ~g~~~~~v~~~~~~--------------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~al~~l 383 (389)
T PRK08068 321 KGSFFAWMPVPKGY--------------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT---DEERLREAVERI 383 (389)
T ss_pred CeeEEEEEECCCCC--------------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC---CHHHHHHHHHHH
Confidence 55554 44553210 12456777765 577544433222 35699999952 455666666666
Q ss_pred HH
Q 038818 476 QE 477 (486)
Q Consensus 476 ~~ 477 (486)
.+
T Consensus 384 ~~ 385 (389)
T PRK08068 384 GK 385 (389)
T ss_pred HH
Confidence 54
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=171.39 Aligned_cols=287 Identities=15% Similarity=0.140 Sum_probs=186.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|...++| +.+++++|.+ ..+++++|+.|+..++.+... +++.|+++...|.+..
T Consensus 59 ~~pt~~~Le----~~lA~l~G~~---------~al~~~sG~~Ai~~~l~al~~-----------~Gd~Vv~~~~~y~~~~ 114 (386)
T PRK06767 59 GNPTVKLFE----ERMAVLEGGE---------EALAFGSGMAAISATLIGFLK-----------AGDHIICSNGLYGCTY 114 (386)
T ss_pred CCcchHHHH----HHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCcHHHHH
Confidence 345555555 5578888864 357788888887666554432 6677888888776654
Q ss_pred HHHH----HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAAQ----IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~~----~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..+. ..|+ ++..++ ..|++++++++++.+ .+|+++.++|++|.+.|+++|.++|+++|++
T Consensus 115 ~~~~~~~~~~gi---~~~~~~-------~~d~~~l~~~i~~~t------klV~lesp~NptG~v~dl~~I~~la~~~g~~ 178 (386)
T PRK06767 115 GFLEVLEEKFMI---THSFCD-------METEADIENKIRPNT------KLIFVETPINPTMKLIDLKQVIRVAKRNGLL 178 (386)
T ss_pred HHHHHHHhhcCe---EEEEeC-------CCCHHHHHHhhCcCc------eEEEEeCCCCCCceecCHHHHHHHHHHcCCE
Confidence 4433 3344 444443 247899998886543 4788999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
+++|+||+.+....+ .. .++|.++.+++|+++++.. +|+++.+++.. .+........+.
T Consensus 179 vivD~a~a~~~~~~p-l~------~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i-~~~~~~~~~~~g----------- 239 (386)
T PRK06767 179 VIVDNTFCSPYLQRP-LE------LGCDAVVHSATKYIGGHGDVVAGVTICKTRAL-AEKIRPMRKDIG----------- 239 (386)
T ss_pred EEEECCCcccccCCc-hh------cCCcEEEecCcceecCCCCceeEEEEeChHHH-HHHHHHHHHHhC-----------
Confidence 999999975443222 11 2789999999999987754 56666665432 221110000010
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------CeeEEEEEee
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------NFAVVCFRVL 409 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------~~~~v~f~~~ 409 (486)
-....+.+|+.++ +.+.+..++++..+++.++.+.|+++|+++.+.-| ..++++|.+.
T Consensus 240 ---------~~~~~~~a~l~~~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~ 308 (386)
T PRK06767 240 ---------GIMAPFDAWLLLR--GLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIK 308 (386)
T ss_pred ---------CCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEc
Confidence 0112344565554 44566778899999999999999999999865422 3468999886
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcE--------EEe-ee-----eE-------C--CEeEEEEEecCCCCcHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQL--------YVS-HG-----MV-------A--GIYFIRFAVGATLTEDR 466 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~--------~~~-~~-----~~-------~--~~~~lR~~~~~~~tt~~ 466 (486)
.. .+...++.+.|...+.. .+. +. .. . ..+.+|+|++- |
T Consensus 309 ~~-------------~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl-----E 370 (386)
T PRK06767 309 GG-------------KEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL-----E 370 (386)
T ss_pred CC-------------HHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc-----C
Confidence 32 22345666665433321 011 10 00 1 24689999953 3
Q ss_pred HHHHHHHHHHHHHHH
Q 038818 467 HVIAAWKVVQEKLDG 481 (486)
Q Consensus 467 did~~i~~l~~~~~~ 481 (486)
|+|.+++.|.++++.
T Consensus 371 ~~~dl~~dl~~al~~ 385 (386)
T PRK06767 371 SWEDIVSDLEQALKK 385 (386)
T ss_pred CHHHHHHHHHHHHhh
Confidence 678888888877654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=169.94 Aligned_cols=289 Identities=16% Similarity=0.171 Sum_probs=192.0
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+ .++++.|.+ .+++++||++|+..++.+... +++.|+++...|.+..
T Consensus 51 ~npt~~~Le~----~lA~leg~e---------~ivvt~gg~~Ai~~~l~all~-----------~Gd~Il~~~~~y~~~~ 106 (388)
T PRK08861 51 GNPNRGLLEQ----TLSELESGK---------GAVVTNCGTSALNLWVSALLG-----------PDDLIVAPHDCYGGTY 106 (388)
T ss_pred CCchHHHHHH----HHHHHhCCC---------eEEEECCHHHHHHHHHHHHcC-----------CCCEEEEcCCchHHHH
Confidence 3455555555 467777742 689999999998877765532 5677888888887644
Q ss_pred HHH----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAA----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..+ ...|+ +++.++ ..|++++++++++++ .+|+++.++|++|.+-|+++|+++|+++|++
T Consensus 107 ~~~~~~~~~~gi---~v~~vd-------~~d~e~l~~~i~~~t------klV~lesP~NPtG~v~dl~~I~~la~~~gi~ 170 (388)
T PRK08861 107 RLFNTRANKGDF---KVQFVD-------QSDAAALDAALAKKP------KLILLETPSNPLVRVVDIAELCQKAKAVGAL 170 (388)
T ss_pred HHHHHHHhcCCe---EEEEEC-------CCCHHHHHHhcCcCC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCE
Confidence 433 22345 666664 248899998886543 4889999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||++|+.+....| .. -++|.++.++|||+++|.+ .|++..++++...+... ...+
T Consensus 171 vIvDea~~~~~~~~p-l~------~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~-~~~~------------- 229 (388)
T PRK08861 171 VAVDNTFLTPVLQKP-LE------LGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAW-WGNC------------- 229 (388)
T ss_pred EEEECCccccccCCC-cc------cCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHH-HHhc-------------
Confidence 999999976544322 11 1799999999999998865 56666666544332210 0001
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC-----C-----------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP-----R-----------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~-----~-----------~~~~ 403 (486)
.|-...+...|..++ |.+-+.-+++++.++|..+.+.|+++|.++-+ .| | ..++
T Consensus 230 -------~G~~~~p~~a~l~~r--gl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~ 300 (388)
T PRK08861 230 -------IGATGTPFDSYMTLR--GIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSM 300 (388)
T ss_pred -------cCCCCChHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCce
Confidence 111234556676665 66888899999999999999999999987533 32 1 2458
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--cCc-------EEEeee-----eE-------CC--EeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINA--SGQ-------LYVSHG-----MV-------AG--IYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~-------~~~~~~-----~~-------~~--~~~lR~~~~~ 460 (486)
++|.+... .+...++.+.|.- .+. ++..+. .. .| .+.+|+|++-
T Consensus 301 ~sf~~~~~-------------~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl 367 (388)
T PRK08861 301 LSFEFAGS-------------FEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL 367 (388)
T ss_pred EEEEeCCC-------------HHHHHHHHhcCCcceEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc
Confidence 88888632 1223345554321 111 111111 00 11 4589999952
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~ 483 (486)
||+|.+++.|++.++.+.
T Consensus 368 -----E~~~dli~Dl~~al~~~~ 385 (388)
T PRK08861 368 -----EDAQDLIADLDQAFAKAA 385 (388)
T ss_pred -----CCHHHHHHHHHHHHHHHH
Confidence 367777888887776654
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=170.90 Aligned_cols=326 Identities=10% Similarity=0.037 Sum_probs=204.0
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCC-CccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC---C
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKS-FLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ---T 181 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~-~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~---~ 181 (486)
.......++|.-+++...++||++.. | +.-+-.-+|+.||+.++.+... +++.|+..+. .
T Consensus 187 ~G~~~iD~iE~la~era~~lF~~~~~~~-----gaNVQp~SGs~AN~aV~~ALl~-----------PGD~IL~ldl~~GG 250 (586)
T PLN02271 187 TGNQYIDQIERLCCERALAAFGLDSEKW-----GVNVQPYSCTSANFAVYTGLLL-----------PGDRIMGLDSPSGG 250 (586)
T ss_pred CCChhHHHHHHHHHHHHHHHhCCccccc-----ccceeeccHHHHHHHHHHHhcC-----------CCCEEEEecCCCCC
Confidence 34455678999999999999998753 2 1123344889999887766533 6777776544 4
Q ss_pred chHHH------HHHHHcCCCCCCeEEEe--cCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHH
Q 038818 182 HSALQ------KAAQIAGIDPKNFRAIK--TTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLC 253 (486)
Q Consensus 182 H~s~~------~a~~~~G~g~~~v~~v~--~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~ 253 (486)
|.+.. +.+...|+ .+..+| +|+ +++.+|.++|++..... +|.+|++.+..++ ..-|+++|+
T Consensus 251 Hlshg~~~~~g~~vs~sG~---~~~~vpY~~d~-~~g~IDyd~lek~a~~~-----rPKLII~g~Sayp--r~~D~~~i~ 319 (586)
T PLN02271 251 HMSHGYYTPGGKKVSGASI---FFESLPYKVNP-QTGYIDYDKLEEKALDF-----RPKILICGGSSYP--REWDYARFR 319 (586)
T ss_pred chhcccccccccccccccc---eEEEEEccccc-ccCccCHHHHHHHhhhc-----CCeEEEECchhcc--CcCCHHHHH
Confidence 55532 23345565 555555 553 36799999999855332 3667777554444 668999999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
+||+++|+++++|+||..+.+....+... +..+|+++.++||||.+|.| |+++++++.. .. ..+....+...
T Consensus 320 eIAdevGA~LmvD~AH~aGLIa~g~~~sP---~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~--~~g~~gs~s~~ 391 (586)
T PLN02271 320 QIADKCGAVLMCDMAHISGLVAAKECVNP---FDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LR--KQGMLLSHGDD 391 (586)
T ss_pred HHHHHcCCEEEEECcccccccccCcCCCC---CcCCcEEEeCCcccCCCCCc-eEEEeccccc--cc--ccCCccccccc
Confidence 99999999999999998887765433222 23799999999999999998 8888765421 00 00000000000
Q ss_pred ----CCCCccCCC-CccccCCCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEE
Q 038818 334 ----DSKQVVDYK-DWQITLSRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCF 406 (486)
Q Consensus 334 ----~~~~~~~~~-~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f 406 (486)
+.....+.. -.+++++-... ..++..+++......+++..++..++|+.|.+.|.+. |++++.. .+.+.+.+
T Consensus 392 ~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLv 470 (586)
T PLN02271 392 NSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLW 470 (586)
T ss_pred cccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeee
Confidence 000000000 01334443322 3455566666656677899999999999999999887 8998763 34567776
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-----CCEeEEEEEe---cCCCCcHHHHHHHHHHHHHH
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-----AGIYFIRFAV---GATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-----~~~~~lR~~~---~~~~tt~~did~~i~~l~~~ 478 (486)
.+.+.+. .... ..+.|...|+.+-.-+.. .....+|+.. +.....++|++++.+.|.++
T Consensus 471 Dl~~~g~----------~G~~---ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~ 537 (586)
T PLN02271 471 DLTTLGL----------TGKN---YEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRA 537 (586)
T ss_pred cCcccCC----------CHHH---HHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6654321 0222 233333445532111111 1235689886 33344668999988888887
Q ss_pred HH
Q 038818 479 LD 480 (486)
Q Consensus 479 ~~ 480 (486)
++
T Consensus 538 ~~ 539 (586)
T PLN02271 538 AQ 539 (586)
T ss_pred Hh
Confidence 65
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=170.10 Aligned_cols=240 Identities=14% Similarity=0.129 Sum_probs=158.0
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.+|...++| +.++++.|.+ ..++|++||+|+..++..... +++.|+++...|.+..
T Consensus 62 ~~p~~~~le----~~lA~l~g~~---------~av~~sSGt~Al~~al~~ll~-----------~Gd~Vi~~~~~y~~t~ 117 (433)
T PRK08134 62 SNPTVAVLE----ERVAALEGGV---------GAIATASGQAALHLAIATLMG-----------AGSHIVASSALYGGSH 117 (433)
T ss_pred cChHHHHHH----HHHHHHhCCC---------cEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCccHHHH
Confidence 345545555 5578888764 358999999999877765522 5677888888887654
Q ss_pred HHH----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAA----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..+ ...|+ +++.++++ |+++|+++|++++ .+|++++++|++|.+.|+++|+++|+++|++
T Consensus 118 ~~~~~~l~~~Gi---~v~~vd~~-------d~~~l~~~i~~~T------klV~~e~~~np~g~v~Di~~I~~la~~~gi~ 181 (433)
T PRK08134 118 NLLHYTLRRFGI---ETTFVKPG-------DIDGWRAAIRPNT------RLLFGETLGNPGLEVLDIPTVAAIAHEAGVP 181 (433)
T ss_pred HHHHHHHhhCCe---EEEEECCC-------CHHHHHHhcCCCC------eEEEEECCCcccCcccCHHHHHHHHHHcCCE
Confidence 443 44688 88888753 7999999998754 3788889999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCchH-HHH--Hh-cCCcccccCccCCCCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPNA-LIK--AL-STNPEFLRNKASDSKQ 337 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~~-~~~--~~-~~~~~y~~~~~~~~~~ 337 (486)
++||++++.+....+ .. -++|.++.|+|||++++.. .|.+++..... +.. .+ ...++...........
T Consensus 182 livD~t~a~~~~~~p-l~------~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (433)
T PRK08134 182 LLVDSTFTTPYLLRP-FE------HGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAE 254 (433)
T ss_pred EEEECCCcccccCCc-hh------cCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhh
Confidence 999999987665332 11 2899999999999987642 45555532211 000 00 0001110000000000
Q ss_pred ccCCCC--------ccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 338 VVDYKD--------WQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 338 ~~~~~~--------~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
...... .....+.......+|..++ |.+.+..++++..+++..+.+.|+++|.++-
T Consensus 255 ~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~--gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~ 318 (433)
T PRK08134 255 ESTVAAFLLRARREGLRDFGACLSPMNAWQLLQ--GIETLPLRMERHVANTRKVVAFLASHPAVAR 318 (433)
T ss_pred ccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 000000 0011122334456665554 6688999999999999999999999988754
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-18 Score=169.47 Aligned_cols=290 Identities=19% Similarity=0.209 Sum_probs=189.0
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-- 184 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-- 184 (486)
..|...++|+ .+++++|.+. .+++++|+.|+..++.+... +++.|+++...|.+
T Consensus 57 ~~p~~~~le~----~lA~l~g~~~---------av~~~sG~~Ai~~~l~al~~-----------~Gd~Vi~~~~~y~~t~ 112 (391)
T TIGR01328 57 GNPTVSNLEG----RIAFLEGTEA---------AVATSSGMGAIAATLLTILK-----------AGDHLISDECLYGCTF 112 (391)
T ss_pred CCchHHHHHH----HHHHHhCCCc---------EEEECCHHHHHHHHHHHHhC-----------CCCEEEEecCcchHHH
Confidence 3455555554 5788888753 58889999888776655432 56677778776643
Q ss_pred --HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 185 --LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 185 --~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
+...+...|+ +++.++.+ |++++++++++.+ .+|+++.++|++|.+-|+++|+++|+++|++
T Consensus 113 ~~~~~~~~~~G~---~~~~vd~~-------d~e~l~~~i~~~t------klV~le~p~Np~G~v~dl~~I~~la~~~gi~ 176 (391)
T TIGR01328 113 ALLEHALTKFGI---QVDFINMA-------IPEEVKAHIKDNT------KIVYFETPANPTMKLIDMERVCRDAHSQGVK 176 (391)
T ss_pred HHHHHHHhcCCe---EEEEECCC-------CHHHHHHhhccCC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCE
Confidence 3455566787 78877653 7899998887543 4788999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc-eEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC-CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~-g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
+++|++|+.+....+ .. .++|.++.+++|+++++... |.+++.+++...+.......++
T Consensus 177 livD~a~a~~~~~~~-~~------~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~------------- 236 (391)
T TIGR01328 177 VIVDNTFATPMLTNP-VA------LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDM------------- 236 (391)
T ss_pred EEEECCCchhccCCc-hh------cCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhC-------------
Confidence 999999976543221 11 27999999999999987642 3344555544432221110000
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeEE
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAVV 404 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v 404 (486)
.+.......+|..++ +.+.+..++++..+++.++.+.|+++|+++.+.-| ..+++
T Consensus 237 ------~g~~l~~~~a~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~ 308 (391)
T TIGR01328 237 ------TGSVISPFDAWLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMI 308 (391)
T ss_pred ------CCCCCCcHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceE
Confidence 011234455566665 44667788999999999999999999987644321 14588
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--cCcE------EEe-ee-----eE-------CC--EeEEEEEecCC
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINA--SGQL------YVS-HG-----MV-------AG--IYFIRFAVGAT 461 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~------~~~-~~-----~~-------~~--~~~lR~~~~~~ 461 (486)
+|.+.+. .+...++.+.|.- .+.- .+. +. .. .| .+.+|+|++-
T Consensus 309 s~~~~~~-------------~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl- 374 (391)
T TIGR01328 309 TFELKGG-------------FAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL- 374 (391)
T ss_pred EEEeCCC-------------HHHHHHHHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc-
Confidence 8887632 1223445554321 1110 011 10 00 11 4579999952
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 038818 462 LTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~l 482 (486)
||+|.+++.|.++++.|
T Consensus 375 ----E~~~dl~~dl~~al~~~ 391 (391)
T TIGR01328 375 ----EDADDLIADLKQALDAL 391 (391)
T ss_pred ----CCHHHHHHHHHHHHhhC
Confidence 37888888888877643
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-17 Score=162.02 Aligned_cols=284 Identities=13% Similarity=0.052 Sum_probs=189.3
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.++.+++ ..++|+|+++++..++.+... +++.|+++..++..+...++..|+
T Consensus 63 ~lr~~ia~~~~~~~~-------~i~it~G~~~~l~~~~~~l~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~-- 122 (351)
T PRK14807 63 KLREELARYCSVVPT-------NIFVGNGSDEIIHLIMLAFIN-----------KGDVVIYPHPSFAMYSVYSKIAGA-- 122 (351)
T ss_pred HHHHHHHHHhCCCcc-------cEEEecCHHHHHHHHHHHhcC-----------CCCEEEEeCCChHHHHHHHHHcCC--
Confidence 345566677787655 688999988887666555432 567788888888888888899999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.+++++ ++.+|++++++++++. .+.+|+++.++|+||.+-+.+++.++|++++.++++|++|+.+. .
T Consensus 123 -~~~~v~~~~--~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~--~ 192 (351)
T PRK14807 123 -VEIPVKLKE--DYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFY--G 192 (351)
T ss_pred -eEEEeecCC--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhc--c
Confidence 999999874 5789999999988642 13467778999999999999999999999999999999996532 1
Q ss_pred ccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCCCccccCCCCCCc
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYKDWQITLSRRFRA 354 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~ 354 (486)
......+... .-..+..++.|.++ ....+|+++. +++... .+.. ...+ ....
T Consensus 193 ~~~~~~~~~~-~~vi~~~S~SK~~~~~GlRiG~~v~-~~~~~~-~~~~~~~~~-----------------------~~~~ 246 (351)
T PRK14807 193 NTIVDVINEF-ENLIVLRTLSKAFGLAGLRVGYAVA-NENILK-YLNLVKSPY-----------------------NINS 246 (351)
T ss_pred cchHHHhhhC-CCEEEEecchHhcccchhceeeeec-CHHHHH-HHHHccCCC-----------------------CcCH
Confidence 1111112111 11255677899997 4456787775 333332 2211 1000 0122
Q ss_pred hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHH
Q 038818 355 LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLES 434 (486)
Q Consensus 355 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 434 (486)
+...++.+.+....+++.+++..+.++++.+.|++.+++++. ++..+.+.+++.. ..++.+.
T Consensus 247 ~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~-----------------~~~~~~~ 308 (351)
T PRK14807 247 LSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKD-----------------ADYVYQG 308 (351)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCC-----------------HHHHHHH
Confidence 333444444433456777777788888899999888888764 5554544444421 2356667
Q ss_pred HHhcCcEEEeeee-ECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 435 INASGQLYVSHGM-VAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 435 l~~~g~~~~~~~~-~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+.++|+.+..... .....++|+++. +.++.++++++|+++
T Consensus 309 l~~~gV~v~~~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~ 349 (351)
T PRK14807 309 LLERGILVRDFSKVEGLEGALRITVS----SCEANDYLINGLKEL 349 (351)
T ss_pred HHHCCEEEEECCCCCCCCCeEEEEcC----CHHHHHHHHHHHHHh
Confidence 7777875432221 123568999985 356889999999875
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=167.22 Aligned_cols=229 Identities=20% Similarity=0.214 Sum_probs=161.0
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH----HHHHH
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ----KAAQI 191 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~----~a~~~ 191 (486)
.++.+.+++++|.+ ..++++||++|+..++.+... +++.|+++...|.+.. ..+..
T Consensus 64 ~~le~~la~l~g~~---------~~v~~ssG~~Ai~~al~al~~-----------~Gd~Vi~~~~~y~~t~~~~~~~~~~ 123 (390)
T PRK08133 64 TMFQERLAALEGAE---------ACVATASGMAAILAVVMALLQ-----------AGDHVVSSRSLFGSTVSLFEKIFAR 123 (390)
T ss_pred HHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEccCcchhHHHHHHHHHHH
Confidence 34556688888864 358899999999877765532 5667888888886533 45567
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|+ +++.++++ |++++++++++.+ .+|+++.++|++|.+.|+++|+++|+++|+++++|++++.
T Consensus 124 ~G~---~v~~vd~~-------d~~~l~~~i~~~t------klV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~ 187 (390)
T PRK08133 124 FGI---ETTFVDLT-------DLDAWRAAVRPNT------KLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCT 187 (390)
T ss_pred cCc---EEEEECCC-------CHHHHHHhcCcCC------eEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 788 88888753 7889998887543 4788889999999999999999999999999999999866
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
+....+ .. .++|.++.++||+++++.. .|.+++.++..+.+.. .+.. .++.
T Consensus 188 ~~~~~p-l~------~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~----~~~~-----------------~~g~ 239 (390)
T PRK08133 188 PALQQP-LK------LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLR-----------------TAGP 239 (390)
T ss_pred cccCCc-hh------hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHH----HHHH-----------------HhCC
Confidence 543222 11 1689999999999987642 3344444433322211 0110 0111
Q ss_pred CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeEEEEEeec
Q 038818 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAVVCFRVLP 410 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v~f~~~~ 410 (486)
......+|..++ |.+.+..++++..+++..+.+.|+++|+++.+.-| ..++++|.+.+
T Consensus 240 ~~~~~~a~~~l~--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 240 TLSPFNAWVFLK--GLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred CCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 223445566554 55788889999999999999999999988654321 14588888853
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-18 Score=175.20 Aligned_cols=368 Identities=12% Similarity=0.121 Sum_probs=222.6
Q ss_pred HHHHHHhhhcCCCcCCCCCCcceecC---C--CCCHHHHHHHH-HHh-hcC-CCccccccChhhHHHHHHHHHHHHHHcC
Q 038818 56 ILQDVQQHIVPGITHWQSPYYFAYFP---S--SGSIAGFLGEM-LSS-GFN-VVGFNWMSSPAATELENIVMDWLGEMLK 127 (486)
Q Consensus 56 il~~l~~~~~~~~~~~~~p~~~~~~~---~--~~~~~~~~~~~-l~~-~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g 127 (486)
+++.|.+....+...|+.|.+.|-.. + +.......++- +.. .-+ -.....-..|.....|.+ +..|++||
T Consensus 132 ~~~aL~~y~~~~~~sfh~PGHkgG~~f~k~p~G~~f~~f~Gen~~r~Dlt~ev~~LddLl~~~G~i~eAe--~~AA~~fg 209 (714)
T PRK15400 132 LTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAE--EYIARVFN 209 (714)
T ss_pred HHHHHHHHHhCCCceeeCCCCCCCCCCCCCchhHHHHHHhhhhhhhhhccccccCCCCCCCCChHHHHHH--HHHHHHhC
Confidence 55566666666777888886654221 1 11222333321 111 111 111111233333444444 88999999
Q ss_pred CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC
Q 038818 128 LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS 207 (486)
Q Consensus 128 ~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~ 207 (486)
.+.+| ++++|+|.+|..++.++.. +++.|++...+|-|+..++.+.|+ ..++++...+
T Consensus 210 Ad~ty--------fvvNGTS~~n~av~~a~~~-----------~Gd~VLvdRN~HKSv~haLilsga---~PVYl~P~rn 267 (714)
T PRK15400 210 ADRSY--------MVTNGTSTANKIVGMYSAP-----------AGSTVLIDRNCHKSLTHLMMMSDV---TPIYFRPTRN 267 (714)
T ss_pred CCcEE--------EEeCchHHHHHHHHHHhcC-----------CCCEEEeecccHHHHHHHHHHcCC---eEEEeccccc
Confidence 99875 8899999999877776654 788999999999999999999999 9999876532
Q ss_pred CC---cccC-----HHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccc
Q 038818 208 SS---FTLT-----PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEF 279 (486)
Q Consensus 208 ~~---~~~d-----~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~ 279 (486)
.. +.++ .+.++++|++... -..|+.+++|.+ |..|.+-++++|.++|+.++ +|||+|||+.+.+.|.+
T Consensus 268 ~~Gi~g~I~~~~~~~e~i~~~i~~~p~-ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 268 AYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred ccCCccCCCccccCHHHHHHHHHhCcc-ccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 21 2345 8999999987543 245767888887 66899999999999999887 79999999988887765
Q ss_pred hhhhcCC-CCC---C--ceeeccccccCCCCcceEEEeeCc---hHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 280 RHFIDGI-EGA---D--SFSLNAHKWFFTTLDCCCLWVKNP---NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 280 ~~~~~~~-~~a---D--si~~~~hK~l~~p~~~g~~~~~~~---~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
+... .+ .++ | .++-|.||.+.+--+++++.++.. +.+.+++. ..+.|.
T Consensus 344 ~~~s-am~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~~----------------------m~~STS 400 (714)
T PRK15400 344 EGKC-GMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYM----------------------MHTTTS 400 (714)
T ss_pred CCcC-hhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHHH----------------------HHcCCC
Confidence 4211 11 245 5 899999999998888888877653 12222221 011111
Q ss_pred CCCc--hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC------eEEecCCCe-eEEEEEeecC----------
Q 038818 351 RFRA--LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR------FEIVAPRNF-AVVCFRVLPS---------- 411 (486)
Q Consensus 351 ~~~~--l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~------~~~~~~~~~-~~v~f~~~~~---------- 411 (486)
+.-. ..+-.+.+.+..+.-++++++..+.+..+++.|.++++ |+++.+... ..-||.+.|.
T Consensus 401 PsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~ 480 (714)
T PRK15400 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNID 480 (714)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCccccc
Confidence 1111 11112222232112256778888899999999988877 777643210 0112221110
Q ss_pred ---------CCC----C--CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 412 ---------ASG----L--GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 412 ---------~~~----~--~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
... . .++ +..+.+.-...+.+.|.++|+. +..+ +...+=+.+ ++..|+++++.++++|.
T Consensus 481 ~~~~~lDP~Klti~tpgi~~~g-~~~~~Gipg~~v~~~L~e~gI~-~E~~---d~~~iLfl~-s~g~t~~~~~~L~~aL~ 554 (714)
T PRK15400 481 NEHMYLDPIKVTLLTPGMKKDG-TMSDFGIPASIVAKYLDEHGIV-VEKT---GPYNLLFLF-SIGIDKTKALSLLRALT 554 (714)
T ss_pred ccccccCCceEEEEeCCCCCCc-cccccCCCHHHHHHHHHHcCCE-EEec---CCCeEEEEe-CCCCCHHHHHHHHHHHH
Confidence 000 0 000 0000111123455566667763 3333 222343444 67889999999999998
Q ss_pred HHHH
Q 038818 477 EKLD 480 (486)
Q Consensus 477 ~~~~ 480 (486)
++-+
T Consensus 555 ~f~~ 558 (714)
T PRK15400 555 DFKR 558 (714)
T ss_pred HHHH
Confidence 8744
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-17 Score=170.22 Aligned_cols=368 Identities=13% Similarity=0.111 Sum_probs=221.8
Q ss_pred HHHHHHhhhcCCCcCCCCCCcceecCCCC-----CHHHHHHHH-HHh-hcC-CCccccccChhhHHHHHHHHHHHHHHcC
Q 038818 56 ILQDVQQHIVPGITHWQSPYYFAYFPSSG-----SIAGFLGEM-LSS-GFN-VVGFNWMSSPAATELENIVMDWLGEMLK 127 (486)
Q Consensus 56 il~~l~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~-l~~-~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g 127 (486)
+++.|.+....+...|+.|.+.|-..-.. ......++- +.. .-+ -.....-..|.....|.+ +..|+.||
T Consensus 132 ~~~aL~~y~~~~~~sfh~PGHkgG~~~~k~p~G~~f~~f~Gen~~r~Dlt~ev~~LddLl~~~G~i~eAe--~~aA~~fg 209 (713)
T PRK15399 132 FTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAE--EYIARTFG 209 (713)
T ss_pred HHHHHHHHHhCCCceeeCCCCCCCCCCCCCchhHHHHHHhhhhhhhhhccccccCCCCCCCCChHHHHHH--HHHHHHhC
Confidence 55666666667777888886654221101 122233321 111 111 111111233433444444 88899999
Q ss_pred CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC
Q 038818 128 LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS 207 (486)
Q Consensus 128 ~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~ 207 (486)
.+.+| ++++|+|.+|..++.++.. +++.|+++..+|-|+..++.+.|+ ..++++...+
T Consensus 210 Ad~ty--------fvvNGTS~~n~av~~a~~~-----------~Gd~VLvdRN~HKSv~~aLilsga---~PVYl~P~~n 267 (713)
T PRK15399 210 AEQSY--------IVTNGTSTSNKIVGMYAAP-----------AGSTLLIDRNCHKSLAHLLMMSDV---VPIWLKPTRN 267 (713)
T ss_pred CCcEE--------EEeCChHHHHHHHHHHhcC-----------CCCEEEeecccHHHHHHHHHHcCC---eeEEeccccc
Confidence 98864 8899999999887777654 788999999999999999999999 9998875432
Q ss_pred CC---cccCH-----HHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE-EeeccccchhccCcc
Q 038818 208 SS---FTLTP-----ESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV-HVDAAYAGSACICPE 278 (486)
Q Consensus 208 ~~---~~~d~-----~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l-hvD~a~g~~~~~~~~ 278 (486)
.. +.+++ +.++++|++.... .+|..+++|.+ |..|.+-++++|.++| |+.+ |||+|||+.+.+.|.
T Consensus 268 ~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~ 342 (713)
T PRK15399 268 ALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPI 342 (713)
T ss_pred ccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcc
Confidence 21 24455 9999999875432 45778888887 5689999999999999 6766 899999998877775
Q ss_pred chh--hhcCCCCCCce---eeccccccCCCCcceEEEeeCc---hHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 279 FRH--FIDGIEGADSF---SLNAHKWFFTTLDCCCLWVKNP---NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 279 ~~~--~~~~~~~aDsi---~~~~hK~l~~p~~~g~~~~~~~---~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
++. .+.+..++|.+ +-|.||.+.+--+++++.++.. +.+.+++.. .+.|.
T Consensus 343 ~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m----------------------~~STS 400 (713)
T PRK15399 343 YQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMM----------------------HTSTS 400 (713)
T ss_pred cCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHH----------------------HcCCC
Confidence 542 22222357877 9999999999999999999763 222222210 11111
Q ss_pred CCCc--hHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCC------eEEecCCCe-eEEEEEeecC---------
Q 038818 351 RFRA--LKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNR------FEIVAPRNF-AVVCFRVLPS--------- 411 (486)
Q Consensus 351 ~~~~--l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~------~~~~~~~~~-~~v~f~~~~~--------- 411 (486)
+.-. ..+-.+.+.+. ..| ++++++..+.+..+++.|.++.+ |+++.+... ..-||.+.+.
T Consensus 401 PsY~LmASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~ 479 (713)
T PRK15399 401 PSYPIVASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDA 479 (713)
T ss_pred cHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCccccccccc
Confidence 1111 11111222222 233 55778888888899999887765 676643210 0012211110
Q ss_pred ----------CC----CCCC-CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 412 ----------AS----GLGD-GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 412 ----------~~----~~~~-~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.. +..+ ..+.+..+.-...+.+.|.++|+. +..+. ...+=+.+ ++..|+++++.++++|.
T Consensus 480 ~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~-~E~~d---~~~vL~l~-s~g~t~~~~~~L~~aL~ 554 (713)
T PRK15399 480 DADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIV-VEKTG---PYNLLFLF-SIGIDKTKAMGLLRGLT 554 (713)
T ss_pred ccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCE-EEecC---CCeEEEEe-CCCCCHHHHHHHHHHHH
Confidence 00 0000 000001111123455566667763 33332 22333444 67889999999999998
Q ss_pred HHHH
Q 038818 477 EKLD 480 (486)
Q Consensus 477 ~~~~ 480 (486)
++-+
T Consensus 555 ~f~~ 558 (713)
T PRK15399 555 EFKR 558 (713)
T ss_pred HHHH
Confidence 7744
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-17 Score=163.51 Aligned_cols=286 Identities=15% Similarity=0.086 Sum_probs=190.0
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.++.+++ .+++|+|+++++..++.+..+ +++.|+++..+|......++..|+
T Consensus 64 ~lr~aia~~~~~~~~-------~I~it~G~~~al~~~~~~l~~-----------~gd~vlv~~P~y~~~~~~~~~~g~-- 123 (353)
T PRK05387 64 ALRQAIAAYYGLDPE-------QVFVGNGSDEVLAHAFLAFFN-----------HDRPLLFPDITYSFYPVYAGLYGI-- 123 (353)
T ss_pred HHHHHHHHHhCCCHH-------HEEEcCCHHHHHHHHHHHhcC-----------CCCEEEEeCCCHHHHHHHHHHcCC--
Confidence 566777888887665 799999999998777766543 667788898888778888899999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh-CceEEeeccccchhcc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY-SIWVHVDAAYAGSACI 275 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~-g~~lhvD~a~g~~~~~ 275 (486)
+++.+|.++ ++.+|+++|++ .+ .+|+++.++||||.+-|.+++.++++++ ++++++|.+|..+.
T Consensus 124 -~~~~v~~~~--~~~~d~~~l~~----~~------~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~-- 188 (353)
T PRK05387 124 -PYEEIPLDD--DFSIDVEDYLR----PN------GGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFG-- 188 (353)
T ss_pred -EEEEeecCC--CCCCCHHHHHh----cC------CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccC--
Confidence 999999874 57899999863 11 2578889999999999999999999886 99999999995431
Q ss_pred CccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc
Q 038818 276 CPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA 354 (486)
Q Consensus 276 ~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~ 354 (486)
........... .-..+..++.|.++.| ..+|+++.. +.... .+........ .+ ....
T Consensus 189 ~~~~~~~~~~~-~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~~~-~l~~~~~~~~-------------~~------~~~~ 246 (353)
T PRK05387 189 GESAIPLIDRY-PNLLVVQTFSKSRSLAGLRVGFAIGH-PELIE-ALNRVKNSFN-------------SY------PLDR 246 (353)
T ss_pred CcchHHHHhhC-CCEEEEEehhHhhcchhhhceeeecC-HHHHH-HHHHhhccCC-------------CC------CcCH
Confidence 11111111111 2246777899998744 457887753 33332 2211100000 00 0122
Q ss_pred hHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHH
Q 038818 355 LKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLE 433 (486)
Q Consensus 355 l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (486)
+..+++.+.+. .+.+++..++..++++++.+.|+++ ++++. ++..+.+.+...+. + ..++.+
T Consensus 247 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------------~--~~~~~~ 309 (353)
T PRK05387 247 LAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSH-------------D--AAELAA 309 (353)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC-------------C--HHHHHH
Confidence 33333333332 3456777888888999999999987 78754 44445554443321 1 245667
Q ss_pred HHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 434 SINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 434 ~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+.++|+.+.........+++|+++. +++++++++++|+++..
T Consensus 310 ~l~~~gi~v~~~~~~~~~~~iRis~~----~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 310 KLRERGIIVRHFNKPRIDQFLRITIG----TDEEMEALVDALKEILA 352 (353)
T ss_pred HHHHCCEEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHhh
Confidence 77777875422111123568999984 45799999999988754
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-18 Score=168.16 Aligned_cols=282 Identities=15% Similarity=0.173 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----HHH
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK----AAQ 190 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~----a~~ 190 (486)
..++.+.+++++|.+ ..+++++|+.|+..++. ... +++.|+++...|.+... .+.
T Consensus 49 ~~~le~~la~l~g~~---------~~l~~~sG~~al~~~l~-ll~-----------~Gd~Vl~~~~~y~~~~~~~~~~~~ 107 (378)
T TIGR01329 49 RTALESLLAKLDKAD---------RAFAFSSGMAALDVITR-LLN-----------NGDEIIAGDDLYGGTDRLLTQVVP 107 (378)
T ss_pred HHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHH-HhC-----------CCCEEEEcCCCchHHHHHHHHHHH
Confidence 345567788888874 35777777766544332 211 56778888888877544 455
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
..|+ +++.++.+ |++++++++++++ .+|+++.++|++|.+.|+++|+++|+++|++++||++++
T Consensus 108 ~~G~---~v~~vd~~-------d~~~le~~i~~~t------klv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 108 RSGV---VVVHVDTT-------DLDKVKAALGPKT------KLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred HcCc---EEEEeCCC-------CHHHHHHhcCcCc------eEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 6788 88888752 7899999887543 489999999999999999999999999999999999996
Q ss_pred chhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 271 GSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
.+....+ .. .++|.+..++||++++|.+ .|+++++++....+... +... .
T Consensus 172 ~~~~~~~-l~------~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~----~~~~-----------------~ 223 (378)
T TIGR01329 172 SPLLCNP-LE------LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYF----LQNS-----------------T 223 (378)
T ss_pred ccccCCh-hh------cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHH----HHHh-----------------c
Confidence 6543221 11 1789999999999999876 88888877654332211 1000 0
Q ss_pred CCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecC----------------CCeeEEEEEeecC
Q 038818 349 SRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAP----------------RNFAVVCFRVLPS 411 (486)
Q Consensus 349 sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~----------------~~~~~v~f~~~~~ 411 (486)
+........|..++ +.+.+..++++..+++..+.+.|+++|.++ +..| ...++++|.+..
T Consensus 224 G~~~~~~~a~l~~~--~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~- 300 (378)
T TIGR01329 224 GSGLAPFDCWLLLR--GIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS- 300 (378)
T ss_pred CCcCCHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC-
Confidence 11122334454443 557888899999999999999999988763 3222 124688998832
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhcCcE--------EE-eee-----eE-------CC--EeEEEEEecCCCCcHHHH
Q 038818 412 ASGLGDGKANEGANELNRKLLESINASGQL--------YV-SHG-----MV-------AG--IYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~--------~~-~~~-----~~-------~~--~~~lR~~~~~~~tt~~di 468 (486)
.+...++.+.|..-++. .+ .+. .. .| .+.+|+|++- ||+
T Consensus 301 -------------~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~ 362 (378)
T TIGR01329 301 -------------VALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI-----EDV 362 (378)
T ss_pred -------------HHHHHHHHHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc-----CCH
Confidence 12234555555322211 11 111 00 11 4689999952 378
Q ss_pred HHHHHHHHHHHHHH
Q 038818 469 IAAWKVVQEKLDGI 482 (486)
Q Consensus 469 d~~i~~l~~~~~~l 482 (486)
|.+++.|++.+++.
T Consensus 363 ~dl~~dl~~al~~~ 376 (378)
T TIGR01329 363 DDLISDLDIAFVTA 376 (378)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888877653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-17 Score=163.18 Aligned_cols=340 Identities=14% Similarity=0.120 Sum_probs=210.4
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+..+.....+.....|....+...+.+.+.+|+.+.+|.+... . ..++|+|+++++..++.+..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~-----~~~I~it~G~~~al~~~~~~l~~------ 117 (403)
T PRK08636 49 QHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDP-----ETEVVATMGSKEGYVHLVQAITN------ 117 (403)
T ss_pred HHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CCeEEECCChHHHHHHHHHHhCC------
Confidence 3344444443322233456555567789999999999988865331 2 488999999888777666543
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC-CCccEEEEeecCCcccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA-GLIPLFLCATVGTTAIT 244 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~-g~~p~~vv~~~gtt~~G 244 (486)
+++.|++...+++.+...++..|+ +++.||++.++++.+|+++|...+++..++ ...+.+++.+.++||||
T Consensus 118 -----~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG 189 (403)
T PRK08636 118 -----PGDVAIVPDPAYPIHSQAFILAGG---NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTT 189 (403)
T ss_pred -----CCCEEEEcCCCCcchHHHHHhcCC---EEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCC
Confidence 677888999999999999999999 999999864345789999776666544322 22456788888999999
Q ss_pred ccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCC-C--ceeeccccccC-CCCcceEEEeeCchHH
Q 038818 245 TVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA-D--SFSLNAHKWFF-TTLDCCCLWVKNPNAL 317 (486)
Q Consensus 245 ~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~a-D--si~~~~hK~l~-~p~~~g~~~~~~~~~~ 317 (486)
.+-+ +++|.++|++|++|+++|.+|+........... +..+... | ..+.++.|.++ ...-+|+++. ++...
T Consensus 190 ~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~-~~~li 267 (403)
T PRK08636 190 ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPS-ILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVG-NKKLV 267 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCC-hhcCCCccccEEEEEecccccCCccceeeeeeC-CHHHH
Confidence 9855 678888999999999999999765321111111 1122221 2 23567999996 5567888765 33333
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
. .+.....+... ..+....... ..++. -..+.++++.+...+..+.+.+.|++. ++++..
T Consensus 268 ~-~~~~~~~~~~~----------------~~~~~~q~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 327 (403)
T PRK08636 268 G-ALKKIKSWLDY----------------GMFTPIQVAA-TIALD-GDQSCVEEIRETYRKRRDVLIESFANA-GWELQK 327 (403)
T ss_pred H-HHHHHHHHhcc----------------cCChHHHHHH-HHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 2 22111111100 0000001111 11222 124556677777788888899999886 676553
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+.....+.+++.+.. ...+ ..++.+.+. +.|+.+.++..+. +.+++|+++. .+++++++.++.
T Consensus 328 p~~g~~~~~~l~~~~---------~~~~--~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~---~~~~~l~~~~~r 393 (403)
T PRK08636 328 PRASMFVWAKIPEPA---------RHLG--SLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI---ENENRIRQAARN 393 (403)
T ss_pred CCcceEEEEECCCcc---------CCCC--HHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec---CCHHHHHHHHHH
Confidence 333344444543210 0001 234555544 4676554443332 2579999994 367789999999
Q ss_pred HHHHHHH
Q 038818 475 VQEKLDG 481 (486)
Q Consensus 475 l~~~~~~ 481 (486)
|+++++.
T Consensus 394 l~~~l~~ 400 (403)
T PRK08636 394 IKKFLKE 400 (403)
T ss_pred HHHHHHh
Confidence 9888765
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=167.25 Aligned_cols=234 Identities=14% Similarity=0.188 Sum_probs=161.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH-
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ- 186 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~- 186 (486)
.|...++| +.+++++|.+.. .++++|+.|+..++.+... +++.|+++...|.+..
T Consensus 64 ~p~~~~Le----~~lA~l~G~~~~---------~~~~sG~~Ai~~~l~~~l~-----------~Gd~Vl~~~~~y~~~~~ 119 (398)
T PRK07504 64 NPTVDMFE----KRMCALEGAEDA---------RATASGMAAVTAAILCQVK-----------AGDHVVAARALFGSCRY 119 (398)
T ss_pred CchHHHHH----HHHHHHhCCCee---------eEecCHHHHHHHHHHHHhC-----------CCCEEEEcCCchhHHHH
Confidence 44444555 567888888653 5677888888766654322 5677888887776543
Q ss_pred ---HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 187 ---KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 187 ---~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
..+...|+ +++.++ .+|+++++++|++.+ .+|+++.++|++|.+-|+++|.++|+++|+++
T Consensus 120 ~~~~~~~~~G~---~v~~vd-------~~d~e~l~~ai~~~t------klV~lesp~NptG~v~dl~~I~~la~~~gi~l 183 (398)
T PRK07504 120 VVETLLPRYGI---ESTLVD-------GLDLDNWEKAVRPNT------KVFFLESPTNPTLEVIDIAAVAKIANQAGAKL 183 (398)
T ss_pred HHHHHHhhcCe---EEEEEC-------CCCHHHHHHhcCcCc------eEEEEECCCCCCcEecCHHHHHHHHHHcCCEE
Confidence 33445677 777774 368999999987543 48999999999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
+||++|+.+....+ . . .++|.++.++||+++++. ..|.+++.++..+.+.+. .+..
T Consensus 184 vvD~a~a~~~~~~~-~-~-----~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~------------- 240 (398)
T PRK07504 184 VVDNVFATPLFQKP-L-E-----LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFR------------- 240 (398)
T ss_pred EEECCccccccCCc-h-h-----hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHH-------------
Confidence 99999976543221 1 1 168999999999998763 344444444443322111 1111
Q ss_pred CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecC-----C-----------CeeEEE
Q 038818 343 DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAP-----R-----------NFAVVC 405 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~-----~-----------~~~~v~ 405 (486)
.++.......+|..++ +.+.+..++++..+++..+.+.|+++|+++ |..| | ..++++
T Consensus 241 ----~~g~~~s~~~A~~~l~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s 314 (398)
T PRK07504 241 ----HTGPSLSPFNAWTLLK--GLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVA 314 (398)
T ss_pred ----HhCCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEE
Confidence 1122334556676665 557788899999999999999999998875 3322 1 156889
Q ss_pred EEeec
Q 038818 406 FRVLP 410 (486)
Q Consensus 406 f~~~~ 410 (486)
|.+.+
T Consensus 315 ~~~~~ 319 (398)
T PRK07504 315 FELKG 319 (398)
T ss_pred EEeCC
Confidence 98853
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-17 Score=165.70 Aligned_cols=354 Identities=12% Similarity=0.090 Sum_probs=210.9
Q ss_pred HHHHHHHHHHhhc-CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 86 IAGFLGEMLSSGF-NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 86 ~~~~~~~~l~~~~-n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
+|..+.+.+...+ +.....|....+..++.+.+.+|+.+..|++.+ ..+.++|+|+++++..++. ...
T Consensus 49 ~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~-----~~~I~it~G~~~al~~~~~-l~~----- 117 (433)
T PRK06855 49 IPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQIT-----PDDIIFFNGLGDAIAKIYG-LLR----- 117 (433)
T ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCC-----HhHEEEcCcHHHHHHHHHH-hcC-----
Confidence 3444455444443 223345665666788999999999998776433 1268999999988866653 222
Q ss_pred ccccCCCCeEEEecCCCchHHHHHH-HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAA-QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI 243 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~-~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~ 243 (486)
+++.|++...+++....+. ...|+ +++.+|+++++++.+|+++|+++++... .+.+++++.++|||
T Consensus 118 ------~Gd~Vlv~~P~Y~~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~i~l~~P~NPT 184 (433)
T PRK06855 118 ------REARVIGPSPAYSTHSSAEAAHAGY---PPVTYRLDPENNWYPDLDDLENKVKYNP----SIAGILLINPDNPT 184 (433)
T ss_pred ------CCCeEEEeCCCCchHHHHHHHhcCC---eEEEEecccccCCCCCHHHHHHHHhcCC----CceEEEEECCCCCC
Confidence 5677888888887755432 34577 8889998764457899999999986321 12357777899999
Q ss_pred cccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCC-ceeeccccccC-CCCcceEEEeeCc---h
Q 038818 244 TTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD-SFSLNAHKWFF-TTLDCCCLWVKNP---N 315 (486)
Q Consensus 244 G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aD-si~~~~hK~l~-~p~~~g~~~~~~~---~ 315 (486)
|.+-+ +++|+++|++||+|+++|.+|+..............-...-. .+..++.|.++ ...-+|+++..+. .
T Consensus 185 G~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~ 264 (433)
T PRK06855 185 GAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDE 264 (433)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhh
Confidence 99965 677888899999999999999765432111111111111112 45567899997 5567999887321 1
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHhCCC
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG----VANLRNFLRSHVRMAQLFQELVGGDN 391 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~~ 391 (486)
.+...+.....+... .. ....+...++...+. .+.+++..+...++.+.+.+.|++++
T Consensus 265 ~~~~~~~~~~~~~~~----------------~~--~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~ 326 (433)
T PRK06855 265 VFKKYINSILNAKMI----------------EV--CSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVP 326 (433)
T ss_pred HHHHHHHHHHHhhcc----------------cc--CCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111111100000000 00 012233333444442 24566677777888888999998887
Q ss_pred CeEEecCCCeeEEEEEeecCCC-CCCCC--CCccchHH-----------HHHHHHH-HHHhcCcEEEeeeeEC-CEeEEE
Q 038818 392 RFEIVAPRNFAVVCFRVLPSAS-GLGDG--KANEGANE-----------LNRKLLE-SINASGQLYVSHGMVA-GIYFIR 455 (486)
Q Consensus 392 ~~~~~~~~~~~~v~f~~~~~~~-~~~~~--~~~~~~~~-----------~~~~l~~-~l~~~g~~~~~~~~~~-~~~~lR 455 (486)
++.+. +|+.+.+.|--.+... ...+. ....+..+ ...++.. .+.+.|+.++++..+. ....+|
T Consensus 327 ~~~~~-~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~R 405 (433)
T PRK06855 327 GLKVN-RTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFR 405 (433)
T ss_pred Ceecc-CCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceE
Confidence 77653 5666655553222210 00000 00000000 0123333 3456787666555442 234699
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 456 FAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 456 ~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+++.+ .++++|++.++.|.+++++.++
T Consensus 406 ls~~~--~~~~~i~~~~~~l~~~~~~~~~ 432 (433)
T PRK06855 406 VTLLE--RDEEKFEWIYQTLAEKIEEYLA 432 (433)
T ss_pred EEECC--CcHHHHHHHHHHHHHHHHHHhc
Confidence 99964 4678999999999999987664
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=168.12 Aligned_cols=237 Identities=13% Similarity=0.120 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH----HHHH
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ----KAAQ 190 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~----~a~~ 190 (486)
...+.+.++++.|.+ ..+++++|+.|+..++..... +++.|+++...|.+.. +.+.
T Consensus 71 ~~~le~~la~l~g~~---------~~v~fsSG~~Ai~~al~~ll~-----------~Gd~VI~~~~~y~~t~~~~~~~l~ 130 (437)
T PRK05613 71 VEALENRIASLEGGV---------HAVAFASGQAAETAAILNLAG-----------AGDHIVTSPRLYGGTETLFLVTLN 130 (437)
T ss_pred HHHHHHHHHHHhCCC---------eEEEeCCHHHHHHHHHHHhcC-----------CCCEEEECCCccHHHHHHHHHHHH
Confidence 344456688888874 357777777888766654421 5678888988898763 4456
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
..|+ +++.++ ++ .|+++++++|+++++ +|++...+|++|.+.||++|+++|+++|+.+|||++++
T Consensus 131 ~~Gi---~v~~vd-~~-----~d~e~l~~~l~~~tk------~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a 195 (437)
T PRK05613 131 RLGI---EVTFVE-NP-----DDPESWQAAVQPNTK------AFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIA 195 (437)
T ss_pred hcCe---EEEEEC-CC-----CCHHHHHHhCCccCe------EEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCc
Confidence 7788 888887 32 289999999876543 67778899999999999999999999999999999997
Q ss_pred chhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCch-HHHHHh--cCCcccccCccCCCCC--ccCCC--
Q 038818 271 GSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPN-ALIKAL--STNPEFLRNKASDSKQ--VVDYK-- 342 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~-~~~~~~--~~~~~y~~~~~~~~~~--~~~~~-- 342 (486)
.+....+ .. .++|.+++++||+++++. +.|.+++.+.. ...... ....+++......... ..++.
T Consensus 196 ~g~~~~p-~~------~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (437)
T PRK05613 196 TAALVRP-LE------LGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAP 268 (437)
T ss_pred cccccCh-HH------hCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchH
Confidence 6554322 11 179999999999998763 34555553321 100000 0000001000000000 00000
Q ss_pred --------CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 343 --------DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 343 --------~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
.+....|-...+..+|+.++ |.+.+..++++..++|..+++.|+++|.++-
T Consensus 269 ~~~~~~~~~~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~ 327 (437)
T PRK05613 269 AFGLKARAGLLRDTGATLSPFNAWVTAQ--GLDTLSLRLERHNENAIKVAEFLNNHEKVAK 327 (437)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence 01111233345566676665 6688899999999999999999999998753
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-18 Score=166.82 Aligned_cols=297 Identities=17% Similarity=0.084 Sum_probs=178.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..|...|...++|+. +++++|.+. .++++||+++++.++.+... ++..|+++...|
T Consensus 28 ~~Y~~~~~~~~L~~~----la~~~g~~~---------~~v~~~g~~a~~~~l~~~~~-----------~gd~vi~~~~~~ 83 (333)
T PRK10534 28 DVYGDDPTVNALQDY----AAELSGKEA---------ALFLPTGTQANLVALLSHCE-----------RGEEYIVGQAAH 83 (333)
T ss_pred cccCCCHHHHHHHHH----HHHHhCCCe---------EEEeCchHHHHHHHHHHhcC-----------CCCeeEEechhh
Confidence 345556666677665 566778754 47888899998887776532 455666777777
Q ss_pred hHHHHH--HHHcC-CCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchH---HHHHH
Q 038818 183 SALQKA--AQIAG-IDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGP---LCDIA 256 (486)
Q Consensus 183 ~s~~~a--~~~~G-~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~---I~~i~ 256 (486)
.+...+ +...| + .++.+++++ ++.+|+++|++++.+....+..+.+|+++. +++|.+.|.++ |.++|
T Consensus 84 ~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~lv~l~n--p~~G~v~~~~~l~~i~~~~ 156 (333)
T PRK10534 84 NYLYEAGGAAVLGSI---QPQPIDAAA--DGTLPLDKVAAKIKPDDIHFARTRLLSLEN--THNGKVLPREYLKQAWEFT 156 (333)
T ss_pred hhHhcCCchHHhcCc---eEEeecCCC--CCCCCHHHHHHhhcccCcCcccceEEEEec--CCCCeecCHHHHHHHHHHH
Confidence 543332 34444 4 667777764 679999999999865321111234566654 34599877655 56788
Q ss_pred HHhCceEEeeccccchhc-c-CccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCC
Q 038818 257 KRYSIWVHVDAAYAGSAC-I-CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD 334 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~-~-~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~ 334 (486)
++|++|+++|+||..... . ....... ....|.++++++|.++.+ .|.+++.+++...........+.
T Consensus 157 ~~~~~~lvvDEA~~~~~~~~~~~~~~~~---~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~~------ 225 (333)
T PRK10534 157 RERNLALHVDGARIFNAVVAYGCELKEI---TQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRKMTG------ 225 (333)
T ss_pred HHcCCeEEeeHHHHHHHHHHcCCCHHHH---HhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHHHhC------
Confidence 999999999999752111 0 1111111 123576777899988876 56544556655432221111000
Q ss_pred CCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCC
Q 038818 335 SKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASG 414 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~ 414 (486)
.+-...++.+.+++..+ +...+.+++..+.++++.+.|+++ ++++. ++..+.+.+++.+.
T Consensus 226 -------------~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~nfv~~~~~~~--- 285 (333)
T PRK10534 226 -------------GGMRQAGILAAAGLYAL--KHNVARLQEDHDNAAWLAEQLREA-GADVM-RQDTNMLFVRVGEE--- 285 (333)
T ss_pred -------------CchhhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhC-CCccC-CCCceEEEEECCch---
Confidence 00001112222233322 222344555566778999999987 78865 45677777666421
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
...++.+.|.++|+.+ .+. ..+|++. +...|+++++++++.|++.+.
T Consensus 286 ------------~~~~~~~~l~~~gi~v-~~~-----~~~rl~~-~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 286 ------------QAAALGEYMRERNVLI-NAS-----PIVRLVT-HLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred ------------hHHHHHHHHHHcCeee-cCC-----ceEEEEE-EeCCCHHHHHHHHHHHHHHhc
Confidence 1345667777888754 332 2579987 456789999999999987653
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-17 Score=164.75 Aligned_cols=331 Identities=12% Similarity=0.087 Sum_probs=211.1
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+..+...|...+...++++.+.+|+.+.+|.+.+. ...+++|+|+++|+..++.+...
T Consensus 44 ~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~----~~~I~~t~G~~~al~~~~~~l~~-------- 111 (387)
T PRK07683 44 SHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP----ESEIIVTIGASEAIDIAFRTILE-------- 111 (387)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCChHHHHHHHHHHhCC--------
Confidence 345556665555444556656667889999999998877764321 11689999999998776655432
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++...+.....+++.+|+ +++.+|.++ +++.+|++++++.+.+. +.+|+++.++|+||.+-
T Consensus 112 ---~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~-~~~~~~~~~l~~~~~~~------~~~i~i~~p~NPtG~~~ 178 (387)
T PRK07683 112 ---PGTEVILPAPIYPGYEPIIRLCGA---KPVFIDTRS-TGFRLTAEALENAITEK------TRCVVLPYPSNPTGVTL 178 (387)
T ss_pred ---CCCEEEEcCCCccchHHHHHHcCC---EEEEeecCc-ccCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCC
Confidence 566788888888888888999999 999999875 35788999999887643 34678889999999984
Q ss_pred ---CchHHHHHHHHhCceEEeeccccchhccCccchhhhc--CCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 248 ---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID--GIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 248 ---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~--~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
++++|+++|+++|+++++|++|..+... +....... +...-..+..++.|.++.| .-+|+++...+ ......
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~-l~~~~~ 256 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIYSELVYE-QPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSY-LAKHIL 256 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecccccceeC-CCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHH-HHHHHH
Confidence 4889999999999999999999765332 11111111 1112235567789999844 45788776543 322211
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
.. ..|.. .+ ...+...++...+ +...+++..++..+.++++.+.|++. ++.+. ++
T Consensus 257 ~~-~~~~~-----------------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~ 313 (387)
T PRK07683 257 KV-HQYNV-----------------TC---ASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM-GLDVE-KP 313 (387)
T ss_pred HH-HHhcc-----------------CC---CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-CC
Confidence 11 11110 00 0112222222222 44556666777788888999999886 66654 45
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHH-HHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLES-INASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
..+.+.+...+.. .. + ...+... +.+.|+.+.++..+. +..++|++++. +++++.+.++.|.
T Consensus 314 ~~~~~~~~~~~~~--------~~--~--~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~---~~~~~~~al~~l~ 378 (387)
T PRK07683 314 TGAFYLFPSIGHF--------TM--S--SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY---SIETLKEGLDRLE 378 (387)
T ss_pred CeeEEEEEecccC--------CC--C--HHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC---CHHHHHHHHHHHH
Confidence 5565555432210 00 1 1233333 345677544443332 35799999963 5779999999998
Q ss_pred HHHHHHh
Q 038818 477 EKLDGIL 483 (486)
Q Consensus 477 ~~~~~l~ 483 (486)
+++++-.
T Consensus 379 ~~l~~~~ 385 (387)
T PRK07683 379 AFLQQKA 385 (387)
T ss_pred HHHHhhc
Confidence 8776543
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-18 Score=169.96 Aligned_cols=216 Identities=15% Similarity=0.190 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----H
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK----A 188 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~----a 188 (486)
...+++.++++++.|.+ ..+++++|+.++ .++..... +++.|+++...|.+..+ .
T Consensus 133 pt~~aLE~~lA~leg~e---------~ai~~~SG~aAi-~~il~ll~-----------~GD~VI~~~~~y~~t~~ll~~~ 191 (464)
T PLN02509 133 PTRDALESLLAKLDKAD---------RAFCFTSGMAAL-SAVTHLIK-----------NGEEIVAGDDVYGGSDRLLSQV 191 (464)
T ss_pred HHHHHHHHHHHHHhCCC---------EEEEeCcHHHHH-HHHHHHhC-----------CCCEEEEcCCchhhHHHHHHHH
Confidence 34566677888888754 356777777554 33333211 66778889888887653 3
Q ss_pred HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 189 AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 189 ~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
+...|+ +++.++. .|++++++++++++ .+|+++.++|++|.+.|+++|+++|+++|++++||+|
T Consensus 192 l~~~G~---~v~~vd~-------~d~e~l~~ai~~~T------klV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A 255 (464)
T PLN02509 192 VPRSGV---VVKRVNT-------TNLDEVAAAIGPQT------KLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNS 255 (464)
T ss_pred HHHCCe---EEEEeCC-------CCHHHHHHhCCcCC------eEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 456687 7777753 37889998886543 4789999999999999999999999999999999999
Q ss_pred ccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 269 YAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
|+.+....+ .. .++|.++.+++||+++|.+ +|+++++++....+... +..
T Consensus 256 ~a~~~~~~p-l~------~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~-----~~~---------------- 307 (464)
T PLN02509 256 IMSPVLSRP-LE------LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF-----LQN---------------- 307 (464)
T ss_pred ccccccCCh-hh------cCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHH-----HHH----------------
Confidence 977654322 11 2799999999999998876 77777776643322110 000
Q ss_pred cCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 347 TLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 347 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
..+.......+|+.++ |.+.+..++++..++++++.+.|+++|.++-
T Consensus 308 ~~g~~l~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~ 354 (464)
T PLN02509 308 SEGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKK 354 (464)
T ss_pred hcCCCcCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhcCCCccE
Confidence 0011124455666665 4578889999999999999999999998853
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=166.29 Aligned_cols=284 Identities=15% Similarity=0.140 Sum_probs=179.3
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
.++++.+++.+|++++ ..++ ++|+++++..++.+... ++..|+++...+..+...++..|+
T Consensus 72 ~~lr~~ia~~~~~~~~-------~i~~~~~Ga~~~i~~~~~~~~~-----------~gd~vlv~~p~y~~~~~~~~~~g~ 133 (361)
T PRK00950 72 PELREALSKYTGVPVE-------NIIVGGDGMDEVIDTLMRTFID-----------PGDEVIIPTPTFSYYEISAKAHGA 133 (361)
T ss_pred HHHHHHHHHHhCCCHH-------HEEEeCCCHHHHHHHHHHHhcC-----------CCCEEEEcCCChHHHHHHHHHcCC
Confidence 4455667777888664 5677 55656655444443321 566788887777777778889999
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhc
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~ 274 (486)
+++.+|.+. ++.+|+++|++++.+. +.+|+++.++|++|.+-|+++|.++|+++|+++++|++|+.+.
T Consensus 134 ---~~~~~~~~~--~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~- 201 (361)
T PRK00950 134 ---KPVYAKREE--DFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA- 201 (361)
T ss_pred ---EEEEeecCC--CCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-
Confidence 999998654 5789999999988542 3367778999999999999999999999999999999997543
Q ss_pred cCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
............. -.+..++.|.++.| ..+|+++..++ ...........+ . ..
T Consensus 202 -~~~~~~~~~~~~~-vi~~~S~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~-----------------~------~~ 255 (361)
T PRK00950 202 -EYDYTPLALEYDN-LIIGRTFSKVFGLAGLRIGYGFVPEW-LIDYYMRAKTPF-----------------S------LT 255 (361)
T ss_pred -ccchHHHHHhcCC-EEEEEeehHhhcCchhhcchhcCCHH-HHHHHHHhcCCC-----------------C------CC
Confidence 1112222221111 13445789998754 34677765432 222111111100 0 12
Q ss_pred chHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHH
Q 038818 354 ALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLL 432 (486)
Q Consensus 354 ~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 432 (486)
.+....+...+. .+.+++..++..++++++.+.|. +++. ++..+.+.+.+.+. ...++.
T Consensus 256 ~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~~~~~i~~~~~~~---------------~~~~~~ 315 (361)
T PRK00950 256 RLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKVY-PSEANFVLVDVTPM---------------TAKEFC 315 (361)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeEC-CCcceEEEEECCCC---------------CHHHHH
Confidence 233334444442 23456666666666666766664 4443 44556666666221 134567
Q ss_pred HHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 433 ESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 433 ~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+.|.++|+.+..+..+. +..++|+++. +.+++++++++|++++
T Consensus 316 ~~l~~~gv~v~~~~~f~~~~~~~lRis~~----~~~~~~~l~~~L~~il 360 (361)
T PRK00950 316 EELLKRGVIVRDCTSFRGLGDYYIRVSIG----TFEENERFLEILKEIV 360 (361)
T ss_pred HHHHHCCEEEeeCCccCCCCCCeEEEECC----CHHHHHHHHHHHHHHh
Confidence 77777787544433332 3568999984 4569999999998864
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=168.90 Aligned_cols=284 Identities=12% Similarity=0.100 Sum_probs=188.7
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCC-CeEEEecCCCchHHHHHHHHcCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENIS-RLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~-~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
.++++++++.+|++.+ ++++|+|+++++..++.+... + +..|+++..+|......++..|+
T Consensus 60 ~~l~~~~a~~~g~~~~-------~I~~~~Gs~e~i~~~~~~~~~-----------~g~~~vli~~P~y~~y~~~~~~~G~ 121 (351)
T PRK01688 60 KAVIENYAAYAGVKPE-------QVLVSRGADEGIELLIRAFCE-----------PGKDAILYCPPTYGMYSVSAETIGV 121 (351)
T ss_pred HHHHHHHHHHhCCCHH-------HEEEcCCHHHHHHHHHHHhcC-----------CCCCEEEEcCCCHHHHHHHHHHcCC
Confidence 4677889999999776 789999999988766655432 3 36788888999999999999999
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccch
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGS 272 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~ 272 (486)
+++.+|.++ ++.+|++++++++. . +.+|+++.++|+||.+-+.+++.++++.. +.++++|+||.-+
T Consensus 122 ---~~~~v~~~~--~~~~d~~~l~~~~~-~------~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f 189 (351)
T PRK01688 122 ---EIRTVPTLD--NWQLDLPAIADNLD-G------VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEF 189 (351)
T ss_pred ---EEEEeecCC--CCCCCHHHHHHhcc-C------CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhc
Confidence 999999875 57999999998873 2 23788889999999998877777776532 6899999999654
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
.. .+.....+...+. -.+.-++.|+++.| ..+|.++.. ++..........+|-
T Consensus 190 ~~-~~s~~~~~~~~~n-~iv~rSfSK~~glaGlRiGy~i~~-~~~i~~l~~~~~~~~----------------------- 243 (351)
T PRK01688 190 CP-QASLAGWLAEYPH-LVILRTLSKAFALAGLRCGFTLAN-EEVINLLLKVIAPYP----------------------- 243 (351)
T ss_pred CC-CCChHHHHhhCCC-EEEEecchHhhcCHHHHHhHHhCC-HHHHHHHHhccCCCC-----------------------
Confidence 31 1111111111111 14566789988743 446777654 333322211111110
Q ss_pred CCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 352 FRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 352 ~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
...+...++...+ +.+.+++.++...+.++++.+.|+++++++.+.++..+.+.+++.+ .
T Consensus 244 v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~-----------------~ 306 (351)
T PRK01688 244 LSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTA-----------------S 306 (351)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC-----------------H
Confidence 0111122222222 2345667777777888999999998877754556666666665531 2
Q ss_pred HHHHHHHHhcCcEEEeeeeECC-EeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~~~-~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
..+.+.|.++|+.+.......+ .+++|+++. +++++++++++|+
T Consensus 307 ~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~----~~~e~~~l~~al~ 351 (351)
T PRK01688 307 SAVFKSLWDQGIILRDQNKQPGLSNCLRITIG----TREECQRVIDALR 351 (351)
T ss_pred HHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC----CHHHHHHHHHhhC
Confidence 4567777788976544332222 568999985 4679999999873
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=168.29 Aligned_cols=320 Identities=13% Similarity=0.124 Sum_probs=204.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 110 AATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 110 ~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
+...+.+.+.+++.+.+|..... ....+++|+|+++++...+.+..+ +++.|+++.+.+..+...+
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v---~p~~Ivit~G~t~al~~l~~~l~~-----------pGD~Vlv~~P~Y~~f~~~~ 161 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARF---DPDRIVLTAGATAANELLTFILAD-----------PGDALLVPTPYYPGFDRDL 161 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCc---CHHHeEEcCChHHHHHHHHHHhCC-----------CCCEEEEcCCCCcchHHHH
Confidence 45678888889998887731110 012689999999988665554433 6778888988888887776
Q ss_pred H-HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEe
Q 038818 190 Q-IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 190 ~-~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhv 265 (486)
. ..|+ +++.|++++++++.+|++++++++++..+.|..+.+|+++.++||+|.+-+ +++|.++|++||+++++
T Consensus 162 ~~~~g~---~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 162 RWRTGV---KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred HhcCCc---EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 6 4688 999999876556789999999999887777777778888999999999865 78889999999999999
Q ss_pred eccccchhccCccchhh---hcCC------CCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 266 DAAYAGSACICPEFRHF---IDGI------EGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~---~~~~------~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
|.+|+...+..+.+... ...+ +.+ .+..+..|.++ ...-+|+++..++.... .......|..
T Consensus 239 DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v-~vi~s~SK~fg~~GlRvG~ivs~n~~l~~-~~~~~~~~~~------ 310 (447)
T PLN02607 239 DEIYSGSVFSASEFVSVAEIVEARGYKGVAERV-HIVYSLSKDLGLPGFRVGTIYSYNDKVVT-TARRMSSFTL------ 310 (447)
T ss_pred eccccccccCCCCcccHHHHHhhcCCCCCcCcE-EEEEcchhcCCCCcceEEEEEEcCHHHHH-HHHHHhhcCC------
Confidence 99997654322222211 1111 112 34578899987 55568988876554432 2211111100
Q ss_pred CCccCCCCccccCCCCCCchHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE-Eee
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWLVLRSFGV-----ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF-RVL 409 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~ 409 (486)
...+...+....+.. ..+.+..++..+..+.+.+.|++. ++++. ++..+.++| ++.
T Consensus 311 ----------------~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~-~~~ag~fvw~~L~ 372 (447)
T PLN02607 311 ----------------VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECL-KGNAGLFCWMNLS 372 (447)
T ss_pred ----------------CCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcc-cCCeeEEEEEEch
Confidence 011222222233322 223445555666777888888876 67654 445455444 443
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
... . .. ..+...++.+++.+ .|+.+.++..+. ..+++|+++.+ .++++++..++.|.+++++-
T Consensus 373 ~~~-~------~~-~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~--~~~~~l~~gl~Ri~~~l~~~ 438 (447)
T PLN02607 373 PLL-E------TP-TREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN--MSEDTLEVALKRIHRFMDRR 438 (447)
T ss_pred Hhh-c------CC-CchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHH
Confidence 210 0 00 01112356666655 576544333332 36899999964 35779999999999887643
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=164.99 Aligned_cols=229 Identities=19% Similarity=0.201 Sum_probs=159.7
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHH
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQI 191 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~ 191 (486)
.++.+.++++.|.+ ..+++++|++|+..++.+... +++.|+++...|.. +...+..
T Consensus 63 ~~Le~~lA~l~g~~---------~~v~~~sG~~Ai~~~l~all~-----------pGD~Vvv~~p~Y~~t~~~~~~~~~~ 122 (405)
T PRK08776 63 DLLGEALAELEGGA---------GGVITATGMGAINLVLNALLQ-----------PGDTLVVPHDAYGGSWRLFNALAKK 122 (405)
T ss_pred HHHHHHHHHHhCCC---------ceEEEcCHHHHHHHHHHHHhC-----------CCCEEEEccCCchHHHHHHHHHHHh
Confidence 33446688888864 357888888877666554422 56677778777765 3334455
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|+ +++.++. .|+++|++++++. +.+|+++.++|++|.+.|+++|+++|+++|++++||++|+.
T Consensus 123 ~g~---~v~~v~~-------~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 123 GHF---ALITADL-------TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred cCc---EEEEECC-------CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 566 6776653 3889999888653 34788899999999999999999999999999999999976
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+....+ .. .++|.+..++||++++|.+ +|++++++++...+... ...+ .+
T Consensus 187 ~~~~~p-l~------~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~-~~~~--------------------~g 238 (405)
T PRK08776 187 PALQKP-LE------FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVW-WANA--------------------LG 238 (405)
T ss_pred cccCCc-cc------ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHH-HHHh--------------------cC
Confidence 432211 11 2789999999999998854 57776766654332211 0000 01
Q ss_pred CCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC----------------CCeeEEEEEeec
Q 038818 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP----------------RNFAVVCFRVLP 410 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~----------------~~~~~v~f~~~~ 410 (486)
-....+..|+.++ |.+.++.++++..+++..+.+.|+++|.++-+ .| -..++++|.+..
T Consensus 239 ~~~s~~~a~l~~~--gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 239 LTGSPFDAFLTLR--GLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred CCCCHHHHHHHHh--hhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 1124566676664 56888999999999999999999999887533 22 124588888863
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-17 Score=163.85 Aligned_cols=330 Identities=13% Similarity=0.049 Sum_probs=202.9
Q ss_pred HHHHHHHHHhhcCC---CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNV---VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 87 ~~~~~~~l~~~~n~---~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
+..+.+.+...++. +...|........+.+.+.+++.+.++..-. ....++|+|+++++..++.....
T Consensus 48 ~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~t~G~~~al~~~~~~l~~---- 118 (394)
T PRK06836 48 PAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT-----ADHIVMTCGAAGALNVALKAILN---- 118 (394)
T ss_pred CHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC-----cCcEEEeCChHHHHHHHHHHhcC----
Confidence 44455655554432 1334544455677888888888877654321 12688999999888766655432
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI 243 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~ 243 (486)
+++.|+++..++..+...++..|+ +++.+|++++ ++.+|+++|++++++. +.+|+++.++|++
T Consensus 119 -------~gd~Vli~~p~~~~~~~~~~~~g~---~v~~v~~~~~-~~~~d~~~l~~~~~~~------~~~v~~~~p~NPt 181 (394)
T PRK06836 119 -------PGDEVIVFAPYFVEYRFYVDNHGG---KLVVVPTDTD-TFQPDLDALEAAITPK------TKAVIINSPNNPT 181 (394)
T ss_pred -------CCCEEEEcCCCCccHHHHHHHcCC---EEEEEecCCc-cCcCCHHHHHhhcCcC------ceEEEEeCCCCCC
Confidence 566788888899888888999999 9999999863 4789999999998654 3467788899999
Q ss_pred cccCC---chHHHHHHHH------hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeC
Q 038818 244 TTVDP---LGPLCDIAKR------YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKN 313 (486)
Q Consensus 244 G~idp---l~~I~~i~~~------~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~ 313 (486)
|.+-| +++|+++|++ ||+++++|.+|................. .-..+..++.|.++ ....+|+++..+
T Consensus 182 G~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~pGlRiG~~~~~~ 260 (394)
T PRK06836 182 GVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYY-DNSIVVYSFSKSLSLPGERIGYIAVNP 260 (394)
T ss_pred CcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHcc-CcEEEEecchhhccCcceeeEEEecCH
Confidence 99876 6677778898 8999999999976432111111111111 12356677899998 445788888764
Q ss_pred chHH-HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 314 PNAL-IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 314 ~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
.... ........ ..... .+.-....+...+..+.+.. +. ..+...+..+.+.+.|+++ +
T Consensus 261 ~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~~~q~~~~~~l~~-~~--~~~~~~~~r~~l~~~L~~~-g 320 (394)
T PRK06836 261 EMEDADDLVAALV-FANRI---------------LGFVNAPALMQRVVAKCLDA-TV--DVSIYKRNRDLLYDGLTEL-G 320 (394)
T ss_pred HHhhhHHHHHHHH-HHhhc---------------cccccCCHHHHHHHHHHhCC-hH--HHHHHHHHHHHHHHHHHhC-C
Confidence 3210 00000000 00000 00000112222222222322 21 2344556677788888887 6
Q ss_pred eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHH
Q 038818 393 FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 393 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i 472 (486)
+++. ++..+.+.|.-.+.. + ..++.+.+.+.|+.+..+..+...+++|++++ .+++++++.+
T Consensus 321 ~~~~-~~~gg~~~~~~~~~~------------~--~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~~~i 382 (394)
T PRK06836 321 FECV-KPQGAFYLFPKSPEE------------D--DVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC---VDTETIERSL 382 (394)
T ss_pred CEee-cCCceEEEEEeCCCC------------C--HHHHHHHHHhCCEEEECchhcCCCCeEEEEec---CCHHHHHHHH
Confidence 7765 444444444322211 1 23455666777886555444434578999995 3577999999
Q ss_pred HHHHHHHHH
Q 038818 473 KVVQEKLDG 481 (486)
Q Consensus 473 ~~l~~~~~~ 481 (486)
+.|++++++
T Consensus 383 ~~l~~~l~~ 391 (394)
T PRK06836 383 PAFEKLAKE 391 (394)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=164.71 Aligned_cols=327 Identities=8% Similarity=-0.003 Sum_probs=203.8
Q ss_pred HHHHHHHhhcC-CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 89 FLGEMLSSGFN-VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 89 ~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
.+.+.+...+. .....|...++..++.+.+.+|+.+..|.+.+. . .+++|+|+++++..++.+...
T Consensus 47 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~~I~it~Gs~~al~~~~~~l~~------- 114 (388)
T PRK07366 47 HALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDP-----ETEVLPLIGSQEGTAHLPLAVLN------- 114 (388)
T ss_pred HHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCC-----cCeEEECCCcHHHHHHHHHHhCC-------
Confidence 34444444442 223446555566788889999998888864321 2 478899999888766665443
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|++...+++.....++..|+ +++.+|+++++.+.+|++++++.+.+. +.+++++.++||||.+
T Consensus 115 ----~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPTG~~ 181 (388)
T PRK07366 115 ----PGDFALLLDPGYPSHAGGVYLAGG---QIYPMPLRAENDFLPVFADIPTEVLAQ------ARLMVLSYPHNPTTAI 181 (388)
T ss_pred ----CCCEEEEcCCCCcchHHHHHhcCC---EEEEEECCCccCCCCCHHHHHHhhccc------ceEEEEeCCCCCCCcc
Confidence 677788898999999999999999 999999986555788999998776543 3467777899999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCC-CC--ceeeccccccC-CCCcceEEEeeCchHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEG-AD--SFSLNAHKWFF-TTLDCCCLWVKNPNALIK 319 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~-aD--si~~~~hK~l~-~p~~~g~~~~~~~~~~~~ 319 (486)
-+ +++|+++|++||+|+++|.+|.-+..........+..+.. -+ .+..++.|.++ ...-+|+++. +++.+..
T Consensus 182 ~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~li~~ 260 (388)
T PRK07366 182 APLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIG-NAQLIQA 260 (388)
T ss_pred CCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcC-CHHHHHH
Confidence 55 6677889999999999999997654311110111111111 12 34568899996 4456887765 3433332
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
.......+-. + ........++..+ ..+.+++..+...+..+++.+.|+++ ++.+..
T Consensus 261 l~~~~~~~~~-------------------~--~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~~ 318 (388)
T PRK07366 261 LRQVKAVVDF-------------------N--QYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-GWPVPL 318 (388)
T ss_pred HHHHHhhccc-------------------C--CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 2111110000 0 0011111222222 24567777888888888999999887 666543
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+.....+.+.+.+.. +....++.+.+. +.|+.+..+..+. +.+++|+++.. +++++++.++.
T Consensus 319 p~~g~f~~~~~~~~~------------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~~l~r 383 (388)
T PRK07366 319 PEATMYVWAKLPEPW------------QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH---DPDILEEAVER 383 (388)
T ss_pred CCeeEEEEEECCccc------------CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC---CHHHHHHHHHH
Confidence 433334444443210 000234555553 5677555444333 24799999953 46789998888
Q ss_pred HHHH
Q 038818 475 VQEK 478 (486)
Q Consensus 475 l~~~ 478 (486)
|.++
T Consensus 384 l~~~ 387 (388)
T PRK07366 384 IAAF 387 (388)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-17 Score=164.81 Aligned_cols=328 Identities=12% Similarity=0.082 Sum_probs=201.2
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+.+.+...++ ....|....+..++.+.+.+|+.+.+|++ .+. ....++|+|+++++..++.+..+.
T Consensus 44 ~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~----~~~i~it~G~~~al~~~~~~l~~~----- 113 (396)
T PRK09147 44 PAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDP----ATQVLPVNGSREALFAFAQTVIDR----- 113 (396)
T ss_pred CHHHHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc----cceEEECCChHHHHHHHHHHHcCC-----
Confidence 3445555555443 23456555556788889999999888865 220 015788999998887666655431
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+..++.|+++..++..+..+++..|+ +++.||++++++|.+|+++|++.+.+. +.+++++.++||||.
T Consensus 114 ---~~~gd~vlv~~P~y~~~~~~~~~~g~---~~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~ 181 (396)
T PRK09147 114 ---DGPGPLVVCPNPFYQIYEGAALLAGA---EPYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCSPGNPTGA 181 (396)
T ss_pred ---CCCCCEEEEcCCCccchHHHHHhcCC---EEEEeccCccccCccCHHHHHHHHhhc------cEEEEEcCCCCCcCc
Confidence 00267788898888888899999999 999999986555789999999877643 346777899999999
Q ss_pred cC---CchHHHHHHHHhCceEEeeccccchhccCc-cchhhhc---CC--CCCC--ceeeccccccC-CCCcceEEEeeC
Q 038818 246 VD---PLGPLCDIAKRYSIWVHVDAAYAGSACICP-EFRHFID---GI--EGAD--SFSLNAHKWFF-TTLDCCCLWVKN 313 (486)
Q Consensus 246 id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~-~~~~~~~---~~--~~aD--si~~~~hK~l~-~p~~~g~~~~~~ 313 (486)
+- .+++|+++|++|++|+++|.+|+.+..... .....+. .. ...+ .+..++.|.++ ....+|+++..+
T Consensus 182 ~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~ 261 (396)
T PRK09147 182 VLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDA 261 (396)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCH
Confidence 85 578888899999999999999976432110 0000010 01 0112 55677899654 446788877543
Q ss_pred chHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 314 PNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 314 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
....+ +.....+... ....+...+++..+ ..+.+.+..+...+..+.+.+.|++.
T Consensus 262 -~l~~~-~~~~~~~~~~--------------------~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-- 317 (396)
T PRK09147 262 -ALLKK-FLLYRTYHGC--------------------AMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV-- 317 (396)
T ss_pred -HHHHH-HHHHhhhccc--------------------CCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 33322 2111011100 01122222323332 23445666667777777788888764
Q ss_pred eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--------CEeEEEEEecCCCC
Q 038818 393 FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--------GIYFIRFAVGATLT 463 (486)
Q Consensus 393 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--------~~~~lR~~~~~~~t 463 (486)
+.+..+.....+.+++. . + ...+.+.+. +.|+.+..+..+. +.+++|++++.
T Consensus 318 ~~~~~p~~g~f~~~~~~-~-------------~--~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~--- 378 (396)
T PRK09147 318 LDVQLPDAGFYLWAKVP-G-------------D--DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA--- 378 (396)
T ss_pred cCCCCCCeeEEEEEECC-C-------------C--HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC---
Confidence 44333333333444443 1 1 134555554 4677554443321 25789999963
Q ss_pred cHHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEKL 479 (486)
Q Consensus 464 t~~did~~i~~l~~~~ 479 (486)
+++++++.++.|.+++
T Consensus 379 ~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 379 PLAECVEAAERIVDFC 394 (396)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3568888888887765
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-17 Score=163.32 Aligned_cols=233 Identities=11% Similarity=0.092 Sum_probs=168.0
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. ++.|-|.+ .++++++|+.|+..++..... +++.|+++...|.+..
T Consensus 60 ~nPt~~~le~~----la~LEg~~---------~a~~~~SGmaAi~~~~~~ll~-----------~GD~Vv~~~~~Yg~t~ 115 (395)
T PRK08114 60 GTLTHFSLQEA----MCELEGGA---------GCALYPCGAAAVANAILAFVE-----------QGDHVLMTGTAYEPTQ 115 (395)
T ss_pred CChhHHHHHHH----HHHHhCCC---------eEEEEhHHHHHHHHHHHHHcC-----------CCCEEEEeCCCcHHHH
Confidence 45666667655 66665543 467888899888776665432 5677888888887765
Q ss_pred HHH----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC--
Q 038818 187 KAA----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS-- 260 (486)
Q Consensus 187 ~a~----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g-- 260 (486)
..+ +..|+ ++..++. .|++.++++|++++ .+|.+.+++|++|.+.||++|+++||++|
T Consensus 116 ~l~~~~l~~~Gi---~v~~vd~-------~d~~~l~~~l~~~T------rlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g 179 (395)
T PRK08114 116 DFCSKILSKLGV---TTTWFDP-------LIGADIAKLIQPNT------KVVFLESPGSITMEVHDVPAIVAAVRSVNPD 179 (395)
T ss_pred HHHHHHHHhcCc---EEEEECC-------CCHHHHHHhcCCCc------eEEEEECCCCCCCEeecHHHHHHHHHHhCCC
Confidence 544 55688 8888763 37789999997654 48999999999999999999999999985
Q ss_pred ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
+.++||++++.+.. .+..+. ++|.+..+.|||++++. .+|+++.++ +........ .+
T Consensus 180 ~~lvVDnT~a~p~~-~~pl~~------GaDivv~S~tKyl~Ghsdv~~G~v~~~~-~~~~~l~~~--~~----------- 238 (395)
T PRK08114 180 AVIMIDNTWAAGVL-FKALDF------GIDISIQAGTKYLVGHSDAMIGTAVANA-RCWEQLREN--SY----------- 238 (395)
T ss_pred CEEEEECCCccccc-cCHHHc------CCcEEEEcCcccccCCCcceeEEEEcCH-HHHHHHHHH--HH-----------
Confidence 99999999988665 322222 89999999999999985 677665443 222211100 00
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-ecCC----------------Ce
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI-VAPR----------------NF 401 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~~~~----------------~~ 401 (486)
..|....+..+|+.++ |.+-+.-+++++.++|..+.+.|+++|.++- ..|. ..
T Consensus 239 --------~~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~g 308 (395)
T PRK08114 239 --------LMGQMVDADTAYMTSR--GLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSS 308 (395)
T ss_pred --------hccCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCc
Confidence 1122335566776665 6688888999999999999999999998863 3321 24
Q ss_pred eEEEEEeec
Q 038818 402 AVVCFRVLP 410 (486)
Q Consensus 402 ~~v~f~~~~ 410 (486)
++++|.+.+
T Consensus 309 g~~sf~l~~ 317 (395)
T PRK08114 309 GLFSFVLKK 317 (395)
T ss_pred eEEEEEecC
Confidence 688898863
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-17 Score=159.79 Aligned_cols=287 Identities=12% Similarity=0.085 Sum_probs=189.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.++++++ +.++|+|+++++..++.+. . ++ .|++...++..+...++..|+
T Consensus 58 ~lr~~ia~~~~~~~~-------~i~it~Ga~~~l~~~~~~~-~-----------~~-~v~i~~P~y~~~~~~~~~~g~-- 115 (354)
T PRK06358 58 ELRKRIASFEQLDLE-------NVILGNGATELIFNIVKVT-K-----------PK-KVLILAPTFAEYERALKAFDA-- 115 (354)
T ss_pred HHHHHHHHHhCCChh-------hEEECCCHHHHHHHHHHHh-C-----------CC-cEEEecCChHHHHHHHHHcCC--
Confidence 455666666787665 7899999998886655442 1 33 466788888888888999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchh
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+++.+|.+.++.+.+| +++.+.+.+. +.+|+++.++||||.+-+ +++|.++|++||+++++|++|..+.
T Consensus 116 -~~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 187 (354)
T PRK06358 116 -EIEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFL 187 (354)
T ss_pred -eeEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccC
Confidence 9999999754457888 5555555322 346777899999999865 7888889999999999999996543
Q ss_pred ccCccchhhhcCCCCCC--ceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 274 CICPEFRHFIDGIEGAD--SFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aD--si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
.. +.....+..+...+ .+..++.|.++ ....+|+++..++............+
T Consensus 188 ~~-~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~----------------------- 243 (354)
T PRK06358 188 EE-NETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPW----------------------- 243 (354)
T ss_pred CC-ccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCC-----------------------
Confidence 21 11111111222212 45667899998 66678988776544332221111100
Q ss_pred CCCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 351 RFRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
....+..+++...+.. +.+.+..+...+.++.+.+.|++++++++. ++..+.+.+++.+ . .
T Consensus 244 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~--------------~---~ 305 (354)
T PRK06358 244 SINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVY-KPSVNFIFFKLEK--------------P---I 305 (354)
T ss_pred cchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CCcceEEEEEcCc--------------h---H
Confidence 1123333444444433 344677778888889999999988787765 4555655444432 1 3
Q ss_pred HHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
++.+.+.++|+.+..+..+. +..++|+++. +.++.++++++|+++.
T Consensus 306 ~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~----~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 306 DLRKELLKKGILIRSCSNYRGLDENYYRVAVK----SREDNKKLLKALEVIL 353 (354)
T ss_pred HHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHHh
Confidence 56777777887655554443 3468999984 4568999999998764
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=149.25 Aligned_cols=379 Identities=13% Similarity=0.099 Sum_probs=239.0
Q ss_pred CHHHHHHHHHhhhcCCCc------CCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHH
Q 038818 52 PIETILQDVQQHIVPGIT------HWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEM 125 (486)
Q Consensus 52 ~~~~il~~l~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l 125 (486)
++..++..|.....++.. ....|.-++-+.+.......+.+.+.+.. ...|..+.+.-.-.+++.+++-+-
T Consensus 43 tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk---~N~Yaps~G~~~AR~AVAeYl~~~ 119 (447)
T KOG0259|consen 43 TIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGK---GNGYAPSVGILPARRAVAEYLNRD 119 (447)
T ss_pred cHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCC---CCCcCCccccHHHHHHHHHHhhcC
Confidence 445566665554333321 11345555666555555555555555432 235566666666666666775554
Q ss_pred cCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC
Q 038818 126 LKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT 205 (486)
Q Consensus 126 ~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d 205 (486)
+..+-+ ..+.++|+|.++|+-.++.+..+ ++.-|+++..+++-...-|...|+ +|+++..-
T Consensus 120 l~~kl~-----a~DV~ltsGC~qAIe~~i~~LA~-----------p~aNILlPrPGfp~Y~~~a~~~~l---EVR~ydlL 180 (447)
T KOG0259|consen 120 LPNKLT-----ADDVVLTSGCSQAIELAISSLAN-----------PGANILLPRPGFPLYDTRAIYSGL---EVRYYDLL 180 (447)
T ss_pred CCCccC-----cCceEEeccchHHHHHHHHHhcC-----------CCCceecCCCCCchHHHhhhhcCc---eeEeeccc
Confidence 433221 23789999999999888877544 778899999998888888999999 99999987
Q ss_pred CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHHHHhCceEEeeccccchhccCccchhh
Q 038818 206 KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF 282 (486)
Q Consensus 206 ~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~ 282 (486)
+..+|++|++.+|.+++++| +++++..++|+.|.+ +.|++|+++|+++|+.++.|+.|+...+....+-..
T Consensus 181 Pe~~weIDL~~veal~DENT------~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpm 254 (447)
T KOG0259|consen 181 PEKDWEIDLDGVEALADENT------VAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPM 254 (447)
T ss_pred CcccceechHHHHHhhccCe------eEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccch
Confidence 77789999999999999987 478899999999988 679999999999999999999997765443333221
Q ss_pred hcCCCCCCceeec-cccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCch--HHH
Q 038818 283 IDGIEGADSFSLN-AHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL--KLW 358 (486)
Q Consensus 283 ~~~~~~aDsi~~~-~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l--~~~ 358 (486)
-.--+.+=.+|.+ ..|-+.+| .-.|++.+.|+.-. |.. ...+..- .++.+.+.. +...+ ++=
T Consensus 255 g~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gv---f~~-~~~~q~~-------~~~~~~~~~---p~TiiQ~AlP 320 (447)
T KOG0259|consen 255 GKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGV---FRD-TKVVQGI-------KNFLDIIPG---PATIIQGALP 320 (447)
T ss_pred hhccccCceEeecccccccccCCceeeeEEEeccccc---ccc-hHHHHHH-------HHHHhccCC---ccHhHHHHhH
Confidence 1111234455555 35555544 57999998876321 110 0000000 000000000 00000 111
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-
Q 038818 359 LVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA- 437 (486)
Q Consensus 359 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 437 (486)
..|..--.+-+.....-...+++.-.+.|+++|++.....|+..+..+.-.... . ..+.. ....++++|.+
T Consensus 321 ~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s-~------~~~~~-dD~dFc~kL~~E 392 (447)
T KOG0259|consen 321 DILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLS-L------FPDIE-DDVDFCQKLARE 392 (447)
T ss_pred HHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchh-h------hcccc-ccHHHHHHHhhh
Confidence 122222345677777888889999999999999999766776555443211110 0 00000 11245555544
Q ss_pred cCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 438 SGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 438 ~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+..+++++..+.-.+|+|++++ +.++.++++.+.|++...+-.
T Consensus 393 esv~~LPG~af~~~nw~Ri~i~---~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 393 ESVICLPGQAFGLKNWLRIVIT---VEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred cceEEeccccccCCCeEEEEEc---cChHHHHHHHHHHHHHHHhhh
Confidence 4556677777777899999984 466789999999999886543
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-18 Score=166.80 Aligned_cols=287 Identities=13% Similarity=0.134 Sum_probs=188.2
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|++ ++++.|.+ .+++++||+.|+..++.+... +++.|++++..|.+..
T Consensus 48 gnPt~~~lE~~----lA~l~g~~---------~~~~~~sG~~Ai~~al~all~-----------~GD~Vl~~~~~y~~t~ 103 (377)
T TIGR01324 48 GTLTHFALQDA----MCELEGGA---------GCYLYPSGLAAVTNSILAFVK-----------AGDHVLMVDSAYEPTR 103 (377)
T ss_pred CCccHHHHHHH----HHHHhCCC---------cEEEECcHHHHHHHHHHHhcC-----------CCCEEEEcCCCcHHHH
Confidence 34555666655 67777754 468899999999877765532 5677888877776654
Q ss_pred HH----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KA----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
.. +...|+ ++..++.+ +.++|++++++.+ .+|++++++|++|.+.||++|+++|+++|++
T Consensus 104 ~~~~~~~~~~gi---~v~~~d~~-------~~e~l~~~i~~~t------klV~lesp~Np~g~~~dl~~I~~la~~~g~~ 167 (377)
T TIGR01324 104 YFCDIVLKRMGV---DITYYDPL-------IGEDIATLIQPNT------KVLFLEAPSSITFEIQDIPAIAKAARNPGIV 167 (377)
T ss_pred HHHHHHHHhcCc---EEEEECCC-------CHHHHHHhcCCCc------eEEEEECCCCCCCcHHHHHHHHHHHHHcCCE
Confidence 33 345677 77766432 2377888876543 4899999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||++|+.+....+ .. .++|.++.+.|||++++.+ +|+++.++ +.+.+... ..+..
T Consensus 168 livD~t~a~g~~~~p-l~------~gaDivv~S~tK~l~G~~d~~gG~v~~~~-~~~~~l~~--~~~~~----------- 226 (377)
T TIGR01324 168 IMIDNTWAAGLLFKP-LE------HGVDISIQAGTKYLVGHSDIMIGTVVANA-RTWDQLRE--HSYLM----------- 226 (377)
T ss_pred EEEECCCccccccCc-cc------cCceEEEecCceeccCCCCceEEEEEeCH-HHHHHHHH--HHHHh-----------
Confidence 999999987655332 11 2799999999999998754 46555543 33222111 01111
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecC----------------CCeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAP----------------RNFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~----------------~~~~~ 403 (486)
|....+..+|..++ |.+-+..++++..++|..+.+.|+++|.++ +..| ...++
T Consensus 227 --------G~~l~p~~a~~~~r--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~ 296 (377)
T TIGR01324 227 --------GQMVDADDAYTTLR--GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGL 296 (377)
T ss_pred --------CCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCce
Confidence 11224456676666 456777889999999999999999998874 3332 12568
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE--------EEee-e-eE---------CCEeEEEEEecCCCCc
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL--------YVSH-G-MV---------AGIYFIRFAVGATLTE 464 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~--------~~~~-~-~~---------~~~~~lR~~~~~~~tt 464 (486)
++|.+.+.. .+...++.+.|.--+.. .+.+ . .. -..+.+|+|++-
T Consensus 297 ~s~~l~~~~------------~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl---- 360 (377)
T TIGR01324 297 FSFVLQRLT------------QKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL---- 360 (377)
T ss_pred EEEEECCCC------------HHHHHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC----
Confidence 899886421 22234555554332211 1110 0 00 012579999953
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038818 465 DRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 465 ~~did~~i~~l~~~~~~ 481 (486)
||.|.+++.|.+.++.
T Consensus 361 -E~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 361 -ENVDDLKADLKAGFEA 376 (377)
T ss_pred -CCHHHHHHHHHHHHhc
Confidence 2677778887777654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-17 Score=162.80 Aligned_cols=325 Identities=13% Similarity=0.080 Sum_probs=201.0
Q ss_pred HHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+...+... ...|....+..++.+.+.+|+.+.+|.+.+. ....++|+|+++++..++.+..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~----~~~ii~t~G~~~~i~~~~~~~~~------- 115 (385)
T PRK09276 47 DHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDP----ETEVISLIGSKEGIAHIPLAFVN------- 115 (385)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CCcEEEccCcHHHHHHHHHHhCC-------
Confidence 34555555554322 2345443445788888999999888864321 01477789988888766655433
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..++..+...++..|+ +++.+|.+.++.+.+|++++++.+.+. +.+|+++.++||||.+
T Consensus 116 ----~gd~Vl~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~ 182 (385)
T PRK09276 116 ----PGDVVLVPDPGYPVYKIGTIFAGG---EPYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAV 182 (385)
T ss_pred ----CCCEEEEcCCCCcChHHHHHHcCC---EEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCC
Confidence 667788898999888889999999 999999875434678999998877643 3467788899999999
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
-+ +++|+++|++||+|+++|.+|+.+.......... +........+..++.|.++.| .-+|+++.. +.... .
T Consensus 183 ~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~-~~l~~-~ 260 (385)
T PRK09276 183 ADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN-ADLIA-G 260 (385)
T ss_pred CCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCC-HHHHH-H
Confidence 66 6888999999999999999997643211111111 111112234566788998644 347877654 33332 2
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
+.....++.. ....+...++...+ ....+++..++..+.++++.+.|++. ++++. +
T Consensus 261 ~~~~~~~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~ 318 (385)
T PRK09276 261 LGKVKSNVDS--------------------GVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLEVE-P 318 (385)
T ss_pred HHHHHhhccC--------------------CCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-C
Confidence 2110001100 00112222222322 24556777777788899999999887 77765 3
Q ss_pred CCeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+..+. +.+++.+.. ...++.+.+. +.|+.+..+..+. +..++|+++. .+++++.+.++.
T Consensus 319 ~~~~~~~~v~~~~~~--------------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~---~~~~~l~~~l~~ 381 (385)
T PRK09276 319 PKATFYVWAPVPKGY--------------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT---VPDERIEEAVER 381 (385)
T ss_pred CCcceEEEEECCCCC--------------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC---CCHHHHHHHHHH
Confidence 44444 344443210 1235566655 4677544433332 2468999995 246677777776
Q ss_pred HHH
Q 038818 475 VQE 477 (486)
Q Consensus 475 l~~ 477 (486)
|.+
T Consensus 382 l~~ 384 (385)
T PRK09276 382 IKK 384 (385)
T ss_pred Hhh
Confidence 653
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-17 Score=163.90 Aligned_cols=285 Identities=15% Similarity=0.075 Sum_probs=191.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH----HHHHHc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ----KAAQIA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~----~a~~~~ 192 (486)
++.+.++++.|.+ .+++++||++|+..++.+... +++.|+++...|.+.. ..+...
T Consensus 69 ~Le~~lA~l~g~~---------~~l~~~sgt~Ai~~~l~al~~-----------~GD~Vl~~~~~y~~~~~~~~~~~~~~ 128 (394)
T PRK07050 69 ALAQRLAEIEGGR---------HALLQPSGLAAISLVYFGLVK-----------AGDDVLIPDNAYGPNRDHGEWLARDF 128 (394)
T ss_pred HHHHHHHHHhCCC---------eEEEeccHHHHHHHHHHHHhC-----------CCCEEEEecCCcccHHHHHHHHHHhc
Confidence 4445678888853 578999999999888776632 6778888888887644 456677
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|+ +++.++.. +.+++++++++. +.+|+++.++|++|.+.|+++|+++|+++|+++++|++|+.+
T Consensus 129 Gi---~v~~vd~~-------~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 129 GI---TVRFYDPL-------IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred Ce---EEEEECCC-------CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence 88 88887642 456788877654 347889999999999999999999999999999999999775
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
....+ .. .++|.++.+.+|++++..+ .|++++++++...+.... ..++ |-
T Consensus 193 ~~~~~-l~------~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~-~~~~--------------------G~ 244 (394)
T PRK07050 193 LAFKP-FE------HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLA-RMRL--------------------GI 244 (394)
T ss_pred cccCH-HH------cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHH-HHhc--------------------CC
Confidence 54322 11 1689999999999987654 566777776554332110 0011 11
Q ss_pred CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeEEEEEeecCCC
Q 038818 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAVVCFRVLPSAS 413 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v~f~~~~~~~ 413 (486)
...+...|..++ |.+.+..++++..+++..+.+.|+++|.+..+..| ..+++.|.+.....
T Consensus 245 ~~~~~~a~l~lr--~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~ 322 (394)
T PRK07050 245 GVSADDCSLVLR--GLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYS 322 (394)
T ss_pred CCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCC
Confidence 123455566665 45677788999999999999999999887644311 14567777754210
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcE--------EEeeee-----E----CCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQL--------YVSHGM-----V----AGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~--------~~~~~~-----~----~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+...++.+.|..-+.. .+.+.. . ...+.+|+|++- ||+|.+++.|.
T Consensus 323 -----------~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl-----E~~~dl~~dl~ 386 (394)
T PRK07050 323 -----------PAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL-----EDEADLIADLE 386 (394)
T ss_pred -----------HHHHHHHHHcCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc-----CCHHHHHHHHH
Confidence 12234555554332221 111210 0 012579999952 36788888888
Q ss_pred HHHHHHh
Q 038818 477 EKLDGIL 483 (486)
Q Consensus 477 ~~~~~l~ 483 (486)
+.++..+
T Consensus 387 ~al~~~~ 393 (394)
T PRK07050 387 QALEAAL 393 (394)
T ss_pred HHHHHhh
Confidence 8776654
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-17 Score=160.32 Aligned_cols=331 Identities=18% Similarity=0.083 Sum_probs=194.0
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCC
Q 038818 53 IETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSF 132 (486)
Q Consensus 53 ~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~ 132 (486)
.++.++.+++.+..+-... --.|+|.-.. +.......+.+..+. +...+.+++.+.+++.+|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~ylgl~~~-~~~~~~~~~~~~~~~-----------g~~~~~~~Le~~lA~~~g~~~e- 72 (346)
T TIGR03576 7 REKALEIIREKISRGGRDS-LYDLTGLAGG-FKIDEEDLELLETYV-----------GPAIFEEKVQELGREHLGGPEE- 72 (346)
T ss_pred HHHHHHHHHHHHhccCCcc-ccccccCCCC-hhHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHcCCCcc-
Confidence 4566777777665553221 1147777433 222333333343331 2347788888999999999765
Q ss_pred ccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEec---CCCchHHHHHHHHcCCCCCCeEEEecCCCCC
Q 038818 133 LFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGS---DQTHSALQKAAQIAGIDPKNFRAIKTTKSSS 209 (486)
Q Consensus 133 ~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s---~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~ 209 (486)
..++++||++||..++.+..+ +++.|+++ ...|.++..+++..|. +++.+
T Consensus 73 ------~ilv~~gg~~a~~~~~~al~~-----------~gd~Vli~~~d~p~~~s~~~~~~l~ga---~~~~~------- 125 (346)
T TIGR03576 73 ------KILVFNRTSSAILATILALEP-----------PGRKVVHYLPEKPAHPSIPRSCKLAGA---EYFES------- 125 (346)
T ss_pred ------eEEEECCHHHHHHHHHHHhCC-----------CCCEEEECCCCCCCchhHHHHHHHcCC---EEecc-------
Confidence 689999999999887776543 45556542 5699999999999998 65322
Q ss_pred cccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCC
Q 038818 210 FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI 286 (486)
Q Consensus 210 ~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~ 286 (486)
.|+++|+. . . .+.+|+++ |++++|.+ .||++|+++|++||+|++||.||+.+........... .
T Consensus 126 --~~l~~l~~-~----~---~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~-~- 192 (346)
T TIGR03576 126 --DELSELKK-I----D---GTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPAL-D- 192 (346)
T ss_pred --CCHHHHhh-C----c---CceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHH-H-
Confidence 14444422 1 1 13355555 56889988 8999999999999999999999986543211101111 1
Q ss_pred CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch
Q 038818 287 EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV 366 (486)
Q Consensus 287 ~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~ 366 (486)
.++|.++.+++|++.++. .|+++.+ +...........+|... ..+..+++++..+..
T Consensus 193 ~~~divv~s~SKalaG~r-~G~v~~~-~~li~~l~~~~~~~~~s---------------------~~~~~~~aa~~aL~~ 249 (346)
T TIGR03576 193 LGADLVVTSTDKLMDGPR-GGLLAGR-KELVDKIKSVGEQFGLE---------------------AQAPLLAAVVRALEE 249 (346)
T ss_pred cCCcEEEeccchhccccc-eEEEEeC-HHHHHHHHHhhcCcccC---------------------ccHHHHHHHHHHHhh
Confidence 147888889999775554 5666654 34433222222223211 112222333333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee
Q 038818 367 ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG 446 (486)
Q Consensus 367 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 446 (486)
...+.+.+...++.+++.+.++. +.+. ++..+.+.+++.+. +. .+.+.+.+.++|+++.+..
T Consensus 250 ~~~~~~~~~l~~r~~~~~~~l~~---~~~~-~~~~~f~~~~~~~~-------------~~-~~~~~~ll~~~gV~v~~~~ 311 (346)
T TIGR03576 250 FELSRIRDAFKRKEEVYLRLFDK---LNVE-RTPTGFVIKGVEEE-------------KL-IEIGLDLLRNYGIITITAV 311 (346)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh---CCCC-cCCCeEEEEeCCCC-------------CH-HHHHHHHHHhCCEEEeCCc
Confidence 12244455666667777777764 3333 33345444444321 10 1233455556787655544
Q ss_pred eEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 447 MVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 447 ~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+. ..+++|+++..+.-+..+.++++++|++-
T Consensus 312 ~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 312 GMPGASKTLRFDLAAKDAERIGDDYLVEAVKDS 344 (346)
T ss_pred ccCCCCCeEEEEEecChHHhcCHHHHHHHHHhc
Confidence 332 25699999975443334799999999764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=164.20 Aligned_cols=324 Identities=16% Similarity=0.113 Sum_probs=194.4
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|..++...+||+.+ ++.+|.+ .+++|+|||+|+..++.+... ++++| ++. .
T Consensus 46 d~~Y~~~~g~~~Leeai----a~~~g~~---------~vv~t~~Gt~Al~la~~al~~-----------pGD~V-~~~-~ 99 (431)
T cd00617 46 DEAYAGSKSFYDLEDAV----QDLFGFK---------HIIPTHQGRGAENILFSILLK-----------PGRTV-PSN-M 99 (431)
T ss_pred CCccCCCCCHHHHHHHH----HHHHCCC---------eEEEcCCHHHHHHHHHHHhCC-----------CCCEE-ccC-C
Confidence 34688888888888775 4455553 479999999999888776543 55666 454 5
Q ss_pred ch-HHHHHHHHcCCCCCCeEEEecCCCC--------CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc-cccC---C
Q 038818 182 HS-ALQKAAQIAGIDPKNFRAIKTTKSS--------SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI-TTVD---P 248 (486)
Q Consensus 182 H~-s~~~a~~~~G~g~~~v~~v~~d~~~--------~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~-G~id---p 248 (486)
|+ +....+...|. .++.+++++.. .|.+|+++|+++|.+... ..+.+|+++.++|++ |.+- +
T Consensus 100 ~f~~~~~~i~~~Ga---~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG~~~s~~~ 174 (431)
T cd00617 100 HFDTTRGHIEANGA---VPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA--ENIPYIVLTITNNTAGGQPVSMAN 174 (431)
T ss_pred cccchHHHHHhCCC---EeEEEecccccccccccCCCCCcCHHHHHHHhCcccC--CCccEEEEECCcCCCCCccCCHHH
Confidence 55 45567788898 99999997532 255999999999985411 123468888888887 7764 5
Q ss_pred chHHHHHHHHhCceEEeeccccch-hccC----ccch-----hhh-cCCCCCCceeeccccccCCCCcceEEEeeCchHH
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGS-ACIC----PEFR-----HFI-DGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNAL 317 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~-~~~~----~~~~-----~~~-~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~ 317 (486)
+++|.++|++||+|+|.|+|+... ..+. +.+. ... .-...+|++++++||-+.+|. .|+++.++++..
T Consensus 175 l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~-GG~i~~~d~~l~ 253 (431)
T cd00617 175 LREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI-GGFLALRDDELY 253 (431)
T ss_pred HHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc-ceEEEeCcHHHH
Confidence 678899999999999999997532 1111 1111 100 012469999999999988876 456777776555
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCch-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL-KLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l-~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.+..... +... + +...++-...-. ++..++... .+ .+.+++..+.+++|.+.|++. |+.+.
T Consensus 254 ~~~~~~~--~~~~------~------~~~~gG~~~r~~~A~A~gL~e~-~~--~~~l~~~~~~r~~l~~~L~~~-G~~v~ 315 (431)
T cd00617 254 EEARQRV--VLYE------G------FVTYGGMAGRDMEALAQGLREA-VE--EDYLRHRVEQVRYLGDRLDEA-GVPIV 315 (431)
T ss_pred HHHHHhc--cccC------C------ccccccccHHHHHHHHHHHHhc-cc--HHHHHHHHHHHHHHHHHHHHC-CCCcc
Confidence 4332111 0000 0 000011111111 111122211 11 245566667779999999987 88887
Q ss_pred cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeE------C-------CEeEEEEEecCCC
Q 038818 397 APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMV------A-------GIYFIRFAVGATL 462 (486)
Q Consensus 397 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~------~-------~~~~lR~~~~~~~ 462 (486)
.|.....+.+.........+ ..+. -...+...| .+.|+..+.-+.+ . .-..+|+.+--..
T Consensus 316 ~P~Ggh~v~~d~~~~~~~~~----~~~~--~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~ 389 (431)
T cd00617 316 EPAGGHAVFIDAREFLPHIP----QEQF--PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRV 389 (431)
T ss_pred CCCcceEEEEEhHHhcCCCC----cccC--cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccc
Confidence 65544444444432100000 0000 123344333 3456543321110 1 1368999984445
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 038818 463 TEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 463 tt~~did~~i~~l~~~~~~ 481 (486)
-|.+++|.+.+.|..+.++
T Consensus 390 ~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 390 YTQDHMDYVAAAVIALYER 408 (431)
T ss_pred cCHHHHHHHHHHHHHHHhh
Confidence 5778999999999998754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-17 Score=164.88 Aligned_cols=310 Identities=15% Similarity=0.156 Sum_probs=191.1
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
.|....+| +.++++.|.+ .++++++|+.|+..++.+... +++.|+++...|.+...
T Consensus 68 ~p~~~~Le----~~lA~l~g~~---------~av~~sSG~aAi~~al~all~-----------~Gd~Vv~~~~~y~~t~~ 123 (436)
T PRK07812 68 NPTQDVVE----QRIAALEGGV---------AALLLASGQAAETFAILNLAG-----------AGDHIVSSPRLYGGTYN 123 (436)
T ss_pred CchHHHHH----HHHHHHhCCC---------eEEEEccHHHHHHHHHHHHhC-----------CCCEEEEeCCcchHHHH
Confidence 44444454 5678888865 358888999998777765432 56677778777766543
Q ss_pred H----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 A----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
. +...|+ +++.++ +. .|+++++++|++++ .+|++..++|++|.+.|+++|+++|+++|+++
T Consensus 124 ~~~~~l~~~Gi---~v~~vd-d~-----~d~e~l~~ai~~~t------klV~ie~~sNp~G~v~Dl~~I~~la~~~gi~l 188 (436)
T PRK07812 124 LFHYTLPKLGI---EVSFVE-DP-----DDLDAWRAAVRPNT------KAFFAETISNPQIDVLDIPGVAEVAHEAGVPL 188 (436)
T ss_pred HHHHHhhcCeE---EEEEEC-CC-----CCHHHHHHhCCCCC------eEEEEECCCCCCCeecCHHHHHHHHHHcCCEE
Confidence 3 334566 777774 32 28999998887543 47899999999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCch-HHHHH-----hcCCcccccCccCCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPN-ALIKA-----LSTNPEFLRNKASDSK 336 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~-~~~~~-----~~~~~~y~~~~~~~~~ 336 (486)
+||++++.+....+ .. .++|.++.++||+++++.+ .|.+++.... .+... ....++|....-.. .
T Consensus 189 iVD~t~a~~~~~~p-l~------~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 260 (436)
T PRK07812 189 IVDNTIATPYLIRP-LE------HGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAE-L 260 (436)
T ss_pred EEECCCcccccCCc-hh------cCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhh-c
Confidence 99999976544322 11 2799999999999986632 4555554321 11000 00111111100000 0
Q ss_pred CccC----CC-CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC-----C------
Q 038818 337 QVVD----YK-DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP-----R------ 399 (486)
Q Consensus 337 ~~~~----~~-~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~-----~------ 399 (486)
.... .. .+....|-......+|..++ |.+.+..++++..++|..+.+.|+++|.++-+ .| |
T Consensus 261 ~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~ 338 (436)
T PRK07812 261 GPPAYALKARVQLLRDLGSAISPFNAFLIAQ--GLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAK 338 (436)
T ss_pred chhHHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHH
Confidence 0000 00 00111233344556665554 67889999999999999999999999987543 22 0
Q ss_pred ------CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--c----Cc---EEEeeee-----E-------CC--
Q 038818 400 ------NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA--S----GQ---LYVSHGM-----V-------AG-- 450 (486)
Q Consensus 400 ------~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~----g~---~~~~~~~-----~-------~~-- 450 (486)
..++++|.+.+. .+...++.+.|.- . |- ++..+.. . .|
T Consensus 339 ~~~~~g~gg~~sf~l~~~-------------~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~ 405 (436)
T PRK07812 339 RLAPKGTGAVLSFELAGG-------------VEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVT 405 (436)
T ss_pred HhCcCCCceEEEEEecCC-------------HHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCC
Confidence 145788888642 1223455554421 1 11 0111110 0 12
Q ss_pred EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 451 IYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 451 ~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.+.+|+|++- ||+|.+++.|.++++..-+
T Consensus 406 ~~liRlSvGl-----Ed~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 406 PGLVRLAVGI-----EGIDDILADLEAGFAAAKA 434 (436)
T ss_pred CCeEEEEecc-----CCHHHHHHHHHHHHHhhhc
Confidence 4579999953 3778888888887765543
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=164.00 Aligned_cols=233 Identities=18% Similarity=0.188 Sum_probs=160.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
.|...++| +.++++.|.+. ++++++|++|+..++.+... +++.|+++...|.+...
T Consensus 60 ~p~~~~Le----~~lA~~~g~~~---------~i~~~sG~~Ai~~~l~all~-----------~Gd~Vl~~~~~y~~t~~ 115 (388)
T PRK07811 60 NPTRTALE----EQLAALEGGAY---------GRAFSSGMAATDCLLRAVLR-----------PGDHIVIPNDAYGGTFR 115 (388)
T ss_pred CccHHHHH----HHHHHHhCCCc---------eEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchHHHH
Confidence 34445555 45777777753 36667788888777766533 56778888888876444
Q ss_pred HHHH----cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 AAQI----AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a~~~----~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
.+.. .|+ +++.++. .|+++|++++++++ .+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 116 ~~~~~~~~~gi---~~~~~d~-------~d~e~l~~~i~~~t------klV~ie~p~NPtg~~~dl~~I~~la~~~gi~l 179 (388)
T PRK07811 116 LIDKVFTRWGV---EYTPVDL-------SDLDAVRAAITPRT------KLIWVETPTNPLLSITDIAALAELAHDAGAKV 179 (388)
T ss_pred HHHHhCcCCCe---EEEEeCC-------CCHHHHHHhcCcCC------eEEEEECCCCCcceecCHHHHHHHHHHcCCEE
Confidence 3322 355 5555542 48999999887643 47889999999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
++|++|+.+....+ .. .++|.++.+++|++++|.+ .|+++++++...... . ++...
T Consensus 180 IvD~a~a~~~~~~p-~~------~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~-~----~~~~~---------- 237 (388)
T PRK07811 180 VVDNTFASPYLQQP-LA------LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAF-A----FLQNG---------- 237 (388)
T ss_pred EEECCCCccccCCc-hh------hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHH-H----HHHHh----------
Confidence 99999976543222 11 2789999999999998754 577777766543321 1 11000
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeEE
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAVV 404 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v 404 (486)
.+.....+..|..++. .+.+..++++..+++..+.+.|+++|+++-+.-| ..+++
T Consensus 238 ------~g~~~s~~~a~l~~~~--L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~ 309 (388)
T PRK07811 238 ------AGAVPGPFDAYLTLRG--LKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMV 309 (388)
T ss_pred ------cCCCCCHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceE
Confidence 0111233455655554 4567788899999999999999999988643211 14588
Q ss_pred EEEeec
Q 038818 405 CFRVLP 410 (486)
Q Consensus 405 ~f~~~~ 410 (486)
+|.+.+
T Consensus 310 s~~~~~ 315 (388)
T PRK07811 310 SVRLAG 315 (388)
T ss_pred EEEeCC
Confidence 898863
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-17 Score=163.60 Aligned_cols=289 Identities=17% Similarity=0.157 Sum_probs=188.2
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|...++| +.++++.|.+ ..+++++|+.|+..++.+... +++.|+++...|.+..
T Consensus 62 ~~p~~~~le----~~lA~l~g~~---------~~i~~ssG~~Ai~~~l~all~-----------~GD~Vi~~~~~y~~~~ 117 (398)
T PRK08249 62 TNPTVQAFE----EKVRILEGAE---------AATAFSTGMAAISNTLYTFLK-----------PGDRVVSIKDTYGGTN 117 (398)
T ss_pred CChHHHHHH----HHHHHHhCCC---------eEEEeCChHHHHHHHHHHhcC-----------CCCEEEEcCCchHHHH
Confidence 344444444 5678888864 357788888888766655432 5677888888887643
Q ss_pred H----HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 K----AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~----a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
. .+...|+ +++.++ ..|+++++++|++.+ .+|+++.++|++|.+.|+++|+++|+++|++
T Consensus 118 ~~~~~~~~~~Gi---~v~~vd-------~~d~e~l~~~i~~~t------klV~ie~p~NPtg~v~dl~~I~~la~~~gi~ 181 (398)
T PRK08249 118 KIFTEFLPRMGV---DVTLCE-------TGDHEQIEAEIAKGC------DLLYLETPTNPTLKIVDIERLAAAAKKVGAL 181 (398)
T ss_pred HHHHHHHhhCCe---EEEEcC-------CCCHHHHHHhcCCCC------eEEEEECCCCCCCccCCHHHHHHHHHHcCCE
Confidence 3 3556677 666654 358999999987643 4788889999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
++||++|+.+....+ .. .++|.++.+++|+++++.. .|.+++.+++...+..... .
T Consensus 182 livD~t~a~~~~~~~-l~------~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~-~--------------- 238 (398)
T PRK08249 182 VVVDNTFATPINQNP-LA------LGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYR-E--------------- 238 (398)
T ss_pred EEEECCcCccccCCc-hh------hCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHH-H---------------
Confidence 999999976443211 11 2789999999999987642 3344455554433221110 0
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C-----C-----------CeeEE
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P-----R-----------NFAVV 404 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~-----~-----------~~~~v 404 (486)
..+-......+|..++ +.+.+..++++..+++..+.+.|+++|.++-+. | | ..+++
T Consensus 239 -----~~g~~~s~~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~ 311 (398)
T PRK08249 239 -----INGATMDPMSAYLILR--GMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGIL 311 (398)
T ss_pred -----hcCCCCCHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceE
Confidence 0111234456666665 557788889999999999999999998876432 2 1 14578
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCcE------EEee-e-----eE-------CC--EeEEEEEecCC
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQL------YVSH-G-----MV-------AG--IYFIRFAVGAT 461 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~~------~~~~-~-----~~-------~~--~~~lR~~~~~~ 461 (486)
+|.+... .+...++.+.|. ..+.- .+.+ . .. .| .+.+|+|++-
T Consensus 312 sf~~~~~-------------~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl- 377 (398)
T PRK08249 312 SFVLKGG-------------MDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGI- 377 (398)
T ss_pred EEEEcCC-------------HHHHHHHHHhCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc-
Confidence 8888532 222345555432 11110 1111 1 00 12 4689999952
Q ss_pred CCcHHHHHHHHHHHHHHHHHHh
Q 038818 462 LTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~l~ 483 (486)
||+|.+++.|.+.++.+.
T Consensus 378 ----E~~~dl~~dl~~al~~~~ 395 (398)
T PRK08249 378 ----EDTEDLIADLEQAFAHLE 395 (398)
T ss_pred ----CCHHHHHHHHHHHHHHhh
Confidence 367777877777776543
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-17 Score=160.53 Aligned_cols=311 Identities=14% Similarity=0.099 Sum_probs=198.7
Q ss_pred HHHHHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
|..+.+.+.+.+.. ....|.. +.. .++++.+++.+|.+.. ..+++|+|+++++..++.+..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~Y~~-~~~----~~lr~~ia~~~~~~~~------~~I~~t~G~~~~i~~~~~~~~~------ 103 (356)
T PRK04870 41 PAELRAELGERLAEVALNRYPD-PRA----AALKAALRAAMGVPAG------ADVLLGNGSDELIQLLALACAK------ 103 (356)
T ss_pred CHHHHHHHHHHhhccccccCCC-CCH----HHHHHHHHHHhCcCCC------CcEEEcCCHHHHHHHHHHHhcC------
Confidence 33445555554432 2233433 332 3455667777787542 1578888887777655544432
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..+|..+...++..|+ +++.+|+++ ++.+|+++|++++.... +.+|+++.++|+||.
T Consensus 104 -----~gd~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~--~~~~d~~~l~~~~~~~~-----~~~v~l~~p~NPtG~ 168 (356)
T PRK04870 104 -----PGATVLAPEPGFVMYRMSAKLAGL---EFVGVPLTA--DFTLDLPAMLAAIAEHR-----PALVFLAYPNNPTGN 168 (356)
T ss_pred -----CCCEEEECCCCHHHHHHHHHHcCC---EEEEecCCC--CCCCCHHHHHHHhhcCC-----CCEEEEcCCCCCCCC
Confidence 667788899999999999999999 999999974 57899999999986421 336777889999999
Q ss_pred cCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCc
Q 038818 246 VDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 246 idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
+-+.+++.++++..+.++++|++|..+.. ..+...+...+. -.+..++.|++.....+|+++..+ ..+.+......
T Consensus 169 ~~~~~~~~~i~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~-vi~~~S~SK~~~~GlRiG~~i~~~-~~i~~~~~~~~ 244 (356)
T PRK04870 169 LFDDADVERIIEAAPGLVVVDEAYQPFAG--DSWLPRLARFPN-LLVMRTVSKLGLAGLRLGYLAGHP-AWIAELDKVRP 244 (356)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCchhhcC--cchHHHHhhCCC-EEEEecchhhhhHHHhhhhhhCCH-HHHHHHHHccC
Confidence 99998888888877999999999965321 111111211111 245677899543344578776643 33332211111
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEE
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVV 404 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v 404 (486)
.+ . ...+..+++...+ ..+.+++..++..++++++.+.|++++++.+. ++..+.+
T Consensus 245 ~~-----------------~------~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~ 300 (356)
T PRK04870 245 PY-----------------N------VNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFI 300 (356)
T ss_pred CC-----------------c------CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEE
Confidence 00 0 1122222222222 12446777888888999999999988888754 5555655
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+++. . ..++.+.+.++|+.+.....+. ..+++|+++. +.+++++++++|+++
T Consensus 301 ~~~~~-~----------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~ 355 (356)
T PRK04870 301 LVRVP-D----------------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG----TPEENAQFLAALKAA 355 (356)
T ss_pred EEECC-C----------------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHh
Confidence 66543 1 1346666777887654433332 3569999985 466999999999875
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-17 Score=161.96 Aligned_cols=289 Identities=12% Similarity=0.022 Sum_probs=189.5
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+++ ..++|+|+++++...+.+... +++.|+++...|......+...|+
T Consensus 71 ~lr~~ia~~~~~~~~-------~i~~t~G~~~~l~~~~~~l~~-----------~gd~vl~~~p~y~~~~~~~~~~g~-- 130 (367)
T PRK02731 71 ELKAALAEKFGVDPE-------RIILGNGSDEILELLARAYLG-----------PGDEVIYSEHGFAVYPIAAQAVGA-- 130 (367)
T ss_pred HHHHHHHHHhCcCHH-------HEEEcCCHHHHHHHHHHHhcC-----------CCCEEEEecCCHHHHHHHHHHcCC--
Confidence 455667777888654 688899888766444443321 566788888888777777888899
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~~ 274 (486)
+++.+|.+ ++.+|+++|++++++. +.+|+++.++|++|.+-|.++|.++|+.+ |+++++|++|..+..
T Consensus 131 -~~~~~~~~---~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~ 200 (367)
T PRK02731 131 -KPVEVPAK---DYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVR 200 (367)
T ss_pred -eEEEeccc---CCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhcc
Confidence 99999885 4689999999988642 34677889999999999999999999875 899999999965432
Q ss_pred cCccchhhhcCCC-CCC-ceeeccccccCC-CCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 275 ICPEFRHFIDGIE-GAD-SFSLNAHKWFFT-TLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 275 ~~~~~~~~~~~~~-~aD-si~~~~hK~l~~-p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
....... +..+. .-+ .++.+..|.++. +..+|+++.+++ ... .+...... +.
T Consensus 201 ~~~~~~~-~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~-~~~-~l~~~~~~----------------~~------ 255 (367)
T PRK02731 201 RKDYEDG-LELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPE-IID-ALNRVRQP----------------FN------ 255 (367)
T ss_pred CcCcccH-HHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHH-HHH-HHHHccCC----------------CC------
Confidence 1111100 11011 112 445577898864 456788877543 322 22111000 00
Q ss_pred CCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+..+++.+.+. .+.+++..++..++.+++.+.|++. ++.+. ++..+.+.+.+.+.. ...+
T Consensus 256 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~--------------~~~~ 319 (367)
T PRK02731 256 VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGK--------------DAAE 319 (367)
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCC--------------CHHH
Confidence 12344445555443 3446677777788888999999887 77765 556677777763211 1345
Q ss_pred HHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.|.++|+.+.....+...+++|+++. +.+++++++++|+++++
T Consensus 320 ~~~~L~~~gI~v~~~~~~~~~~~iRis~~----~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 320 AYQALLKRGVIVRPVAGYGLPNALRITIG----TEEENRRFLAALKEFLA 365 (367)
T ss_pred HHHHHHHCCEEEEeCCCCCCCCeEEEecC----CHHHHHHHHHHHHHHHh
Confidence 67777778875443332222468999983 46699999999998754
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=165.50 Aligned_cols=217 Identities=17% Similarity=0.126 Sum_probs=153.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|...++|+ .+++++|.+ ..++++||+.|+..++.+... +++.|+++...|.+..
T Consensus 51 ~np~~~~lE~----~lA~l~g~~---------~~l~~~sG~~Ai~~~l~~ll~-----------~GD~Vlv~~~~y~~~~ 106 (385)
T PRK08574 51 ENPTLRPLEE----ALAKLEGGV---------DALAFNSGMAAISTLFFSLLK-----------AGDRVVLPMEAYGTTL 106 (385)
T ss_pred CCccHHHHHH----HHHHHhCCC---------cEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHH
Confidence 3455555554 578888764 357888999998877765532 6777888989998876
Q ss_pred HHHHH---cCCCCCCeEEEecCCCCCcccCHHHHHHHHHH-HHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAAQI---AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDL-DIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~~~---~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~-~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..++. .|+ +++.++ +|+++|++++++ . +.+|++..++|++|.+-|+++|+++|+++|++
T Consensus 107 ~~~~~~~~~g~---~v~~~~--------~d~~~l~~~i~~~~------tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~ 169 (385)
T PRK08574 107 RLLKSLEKFGV---KVVLAY--------PSTEDIIEAIKEGR------TKLVFIETMTNPTLKVIDVPEVAKAAKELGAI 169 (385)
T ss_pred HHHHHhhccCc---EEEEEC--------CCHHHHHHhcCccC------ceEEEEECCCCCCCEecCHHHHHHHHHHcCCE
Confidence 66543 355 555542 367889988865 3 34788899999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
+++|++|+.+....+ .. .++|.++.++||++++|.. .|+++++++....+..... .+.
T Consensus 170 livD~t~a~~~~~~~-l~------~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~-~~~------------ 229 (385)
T PRK08574 170 LVVDNTFATPLLYRP-LR------HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR-RRL------------ 229 (385)
T ss_pred EEEECCCCccccCCh-hh------hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH-Hhc------------
Confidence 999999976543222 11 2689999999999998754 4656676665433221110 011
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE 394 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 394 (486)
+.....+.+|..++ |.+.+..++++..+++.++.+.|+++|.++
T Consensus 230 --------g~~~~p~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 230 --------GTIMQPFEAYLVLR--GLKTLEVRFERQCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred --------CCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 11123344555555 557788899999999999999999998875
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-17 Score=146.43 Aligned_cols=297 Identities=12% Similarity=0.077 Sum_probs=203.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
...+.+.+...++++-|-++ .++.+++-.||..++.+... +++.|+..+..|.|+....+
T Consensus 110 tq~iHk~LE~kiAqfh~rED---------~ilypscfdANag~feail~-----------pedAvfSDeLNhASIIdGir 169 (417)
T KOG1359|consen 110 TQDIHKLLESKIAQFHGRED---------TILYPSCFDANAGAFEAILT-----------PEDAVFSDELNHASIIDGIR 169 (417)
T ss_pred chHHHHHHHHHHHHHhCCCc---------eEEeccccccchHHHHHhcC-----------hhhhhhccccccchhhhhhH
Confidence 35677777788899887654 58888888899766665543 77888888899999988877
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
++.- .+++|+-.|+..+.+..+.. -.+|+.....++.|.+.|+++|.+++++||+.+.+|.+|+
T Consensus 170 Lckr--------------y~h~dv~~l~~~l~~a~k~r--~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHa 233 (417)
T KOG1359|consen 170 LCKR--------------YRHVDVFDLEHCLISACKMR--LKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHA 233 (417)
T ss_pred HHhh--------------hccchhHHHHHHHHHhhhhe--EEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeeccc
Confidence 7642 23778888998887654422 2345555678899999999999999999999999999998
Q ss_pred chhccCccch---hhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHh-cCCcccccCccCCCCCccCCCCccc
Q 038818 271 GSACICPEFR---HFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKAL-STNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 271 ~~~~~~~~~~---~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
.++... ..+ ..+.-+..+|.+.....|.+++.. |.+..-.+.+ .+.+ +...+|++....
T Consensus 234 Tgf~G~-tGrGt~E~~~vm~~vdiinsTLgKAlGga~--GGyttgp~~l-i~llrqr~RpylFSnsl------------- 296 (417)
T KOG1359|consen 234 TGFFGE-TGRGTAEEFGVMGDVDIINSTLGKALGGAS--GGYTTGPKPL-ISLLRQRSRPYLFSNSL------------- 296 (417)
T ss_pred ceeecC-CCCChHHHhCCCCcceehhhhhhhhhcCCC--CCCccCChhH-HHHHHhcCCceeecCCC-------------
Confidence 765432 222 223334579999999999988542 2333333333 2333 445578876421
Q ss_pred cCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 347 TLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 347 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
..+--..+.+++..+.. -...+.+...+.+++++.++.. ||.+.+.. .+++...+.+ .+
T Consensus 297 ppavV~~a~ka~dllm~-----s~~~i~~~~a~~qrfr~~me~a-GftIsg~~-hPI~pv~lGd--------------a~ 355 (417)
T KOG1359|consen 297 PPAVVGMAAKAYDLLMV-----SSKEIQSRQANTQRFREFMEAA-GFTISGAS-HPICPVMLGD--------------AR 355 (417)
T ss_pred ChhhhhhhHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHhc-CceecCCC-CCccceeccc--------------HH
Confidence 11101123344433321 1345677788899999999875 99987543 4555555443 45
Q ss_pred HHHHHHHHHHhcCcEEEe---eeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVS---HGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~---~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+..+..+.|+.+|+.++. |.+..++..+|+.+...+ |+||||++++++.++.+.+
T Consensus 356 lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaH-t~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 356 LASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAH-TEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred HHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhc-CHHHHHHHHHHHHHHHHhh
Confidence 667788889999985443 344567889999986544 5569999999999998754
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=166.96 Aligned_cols=306 Identities=18% Similarity=0.203 Sum_probs=192.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-- 184 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-- 184 (486)
..|....+| +.++++.|.+ ..++++||+.|+..++..... +++.|+++...|..
T Consensus 62 ~~p~~~~Le----~~lA~leg~~---------~al~~~sG~~Ai~~al~~ll~-----------~GD~Vlv~~~~y~~t~ 117 (431)
T PRK08248 62 MNPTTDVFE----KRIAALEGGI---------GALAVSSGQAAITYSILNIAS-----------AGDEIVSSSSLYGGTY 117 (431)
T ss_pred CCchHHHHH----HHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEccCchhhHH
Confidence 345545555 4578888754 468999999998877765532 56678888777754
Q ss_pred --HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 185 --LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 185 --~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
+...++..|+ +++.++. .|+++++++|++.+ .+|+++.++|++|.+.|+++|+++|+++|++
T Consensus 118 ~~~~~~~~~~Gv---~v~~vd~-------~d~e~l~~ai~~~t------klV~l~sp~NPtG~v~di~~I~~la~~~gi~ 181 (431)
T PRK08248 118 NLFAHTLPKLGI---TVKFVDP-------SDPENFEAAITDKT------KALFAETIGNPKGDVLDIEAVAAIAHEHGIP 181 (431)
T ss_pred HHHHHHHHhCCE---EEEEECC-------CCHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCE
Confidence 3345667888 8888865 28899999886543 4788889999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCccc--ccCccCCCCCc-
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEF--LRNKASDSKQV- 338 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y--~~~~~~~~~~~- 338 (486)
+++|++++.+....| .. .++|.++.++|||+++|. .+|.+++...... +.....| +..........
T Consensus 182 vIvD~t~a~~~~~~p-l~------~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 251 (431)
T PRK08248 182 LIVDNTFASPYLLRP-IE------HGADIVVHSATKFIGGHGTSIGGVIVDSGKFD---WKGSGKFPGLTEPDPSYHGLV 251 (431)
T ss_pred EEEeCCCCccccCCh-hH------cCCCEEEEcCccccCCCCCceEEEEEeCCccc---cccccccccccCCccccccch
Confidence 999999975433222 11 279999999999999885 3666666433210 0000000 10000000000
Q ss_pred -cC-----------CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC-----C-
Q 038818 339 -VD-----------YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP-----R- 399 (486)
Q Consensus 339 -~~-----------~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~-----~- 399 (486)
.+ ...+....|....+..+|..++ |.+-+..++++..++|..+.+.|+++|.++-+ .| |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~ 329 (431)
T PRK08248 252 YTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQ--GLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPS 329 (431)
T ss_pred hhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCcc
Confidence 00 0000111233345556666555 66888899999999999999999999987643 22 0
Q ss_pred -----------CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCc-------EEEeee-----eE------
Q 038818 400 -----------NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQ-------LYVSHG-----MV------ 448 (486)
Q Consensus 400 -----------~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~-------~~~~~~-----~~------ 448 (486)
..++++|.+.+. .+...++.+.|. ..+. ++..+. ..
T Consensus 330 ~~~~~~~~~~g~gg~~sf~l~~~-------------~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~ 396 (431)
T PRK08248 330 YELAKKYLPKGQGAILTFGIKGG-------------VEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQL 396 (431)
T ss_pred HHHHHHhCcCCCceEEEEEecCC-------------HHHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHH
Confidence 145888888532 122345555432 1111 011111 00
Q ss_pred -CC--EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 449 -AG--IYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 449 -~~--~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.| .+.+|+|++- ||++.+++.|.++++..
T Consensus 397 ~~gi~~~liRlsvGl-----Ed~~dL~~Dl~~Al~~~ 428 (431)
T PRK08248 397 AAGVTPGLVRLSVGT-----EAIDDILDDLRQAIRQS 428 (431)
T ss_pred hcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhh
Confidence 12 4679999952 36777888888777643
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-17 Score=162.32 Aligned_cols=304 Identities=16% Similarity=0.103 Sum_probs=191.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
++...++|++ +++.+|.+ .++.+++||.|+..|+.+..-. +++.|+++..+..+...
T Consensus 24 g~~~~~fE~~----~a~~~g~~---------~~~~~~sgt~Al~~al~~l~~~----------~gdeVi~p~~t~~~~~~ 80 (363)
T PF01041_consen 24 GPYVEEFEKE----FAEYFGVK---------YAVAVSSGTSALHLALRALGLG----------PGDEVIVPAYTFPATAS 80 (363)
T ss_dssp SHHHHHHHHH----HHHHHTSS---------EEEEESSHHHHHHHHHHHTTGG----------TTSEEEEESSS-THHHH
T ss_pred CHHHHHHHHH----HHHHhCCC---------eEEEeCChhHHHHHHHHhcCCC----------cCceEecCCCcchHHHH
Confidence 7777888876 45566643 5789999999999888874322 67899999999999999
Q ss_pred HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 188 AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 188 a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
++..+|+ +++.+++|+ +++.||+++|+++|++.++ +|++++ ..|...|+++|.++|+++|++++.|+
T Consensus 81 ai~~~G~---~pv~~Di~~-~~~~id~~~~~~~i~~~t~------ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~ 147 (363)
T PF01041_consen 81 AILWAGA---EPVFVDIDP-ETLNIDPEALEKAITPKTK------AILVVH---LFGNPADMDAIRAIARKHGIPLIEDA 147 (363)
T ss_dssp HHHHTT----EEEEE-BET-TTSSB-HHHHHHHHHTTEE------EEEEE----GGGB---HHHHHHHHHHTT-EEEEE-
T ss_pred HHHHhcc---EEEEEeccC-CcCCcCHHHHHHHhccCcc------EEEEec---CCCCcccHHHHHHHHHHcCCcEEEcc
Confidence 9999999 999999996 4789999999999998764 566654 57888999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeecc--ccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNA--HKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~--hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
|++.+..... ..-| ...|..++|+ .|.+.+. ..|++++++++...+.......-.... ....+.
T Consensus 148 a~a~g~~~~g----~~~G-~~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~ 213 (363)
T PF01041_consen 148 AQAFGARYKG----RPVG-SFGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRD--------AFRRYR 213 (363)
T ss_dssp TTTTT-EETT----EETT-SSSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETS--------ECSTTE
T ss_pred ccccCceeCC----Eecc-CCCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCcc--------cccccc
Confidence 9977653322 1112 1346666665 5888443 468888888766543321111000000 000000
Q ss_pred cc--CCC--CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC------eeEEEEEeecCCCCC
Q 038818 346 IT--LSR--RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN------FAVVCFRVLPSASGL 415 (486)
Q Consensus 346 ~~--~sr--~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~------~~~v~f~~~~~~~~~ 415 (486)
-+ .+. +...+.+...+..+ +.+.+.+++..++++++.+.|..++++.....+. ...+.+.+.+..
T Consensus 214 ~~~~~g~n~rm~~~~AAigl~QL--~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~--- 288 (363)
T PF01041_consen 214 HELPPGYNFRMSELQAAIGLAQL--KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA--- 288 (363)
T ss_dssp ESSSS--B-B-BHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG---
T ss_pred ccccCCcccccHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc---
Confidence 00 111 23334433344433 6788999999999999999999999887764322 123455554321
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeee--eE------CC----------------EeEEEEEecCCCCcHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHG--MV------AG----------------IYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~------~~----------------~~~lR~~~~~~~tt~~did~~ 471 (486)
. .....+.+.|.+.|+-..... .+ .. ...|-+- .++..+++|++++
T Consensus 289 -----~----~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP-~~~~lt~edv~~I 358 (363)
T PF01041_consen 289 -----L----ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLP-IHPRLTEEDVDYI 358 (363)
T ss_dssp -----C----STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEE-HSTTSCHHHHHHH
T ss_pred -----c----chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECc-CCCCCCHHHHHHH
Confidence 0 113467778888887422211 00 00 1234444 4788999999999
Q ss_pred HHHHH
Q 038818 472 WKVVQ 476 (486)
Q Consensus 472 i~~l~ 476 (486)
+++|+
T Consensus 359 ~~~ir 363 (363)
T PF01041_consen 359 AEAIR 363 (363)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 99885
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-17 Score=160.30 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=161.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
.|....+|+. ++++.|.. .+++++||++|+..++.+... +++.|+++...|.+...
T Consensus 60 npt~~~Le~~----iA~le~~~---------~~~~~~sG~~Ai~~~l~all~-----------~GD~Vvv~~~~Y~~t~~ 115 (394)
T PRK09028 60 TPTHFAFQAA----IVELEGGA---------GTALYPSGAAAISNALLSFLK-----------AGDHLLMVDSCYEPTRD 115 (394)
T ss_pred CchHHHHHHH----HHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEECCCcHHHHH
Confidence 4555566654 55665542 468999999998777765433 66778888888766554
Q ss_pred H----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 A----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
. ....|+ ++..++.+ +.+.+++++++++ .+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 116 l~~~~l~~~Gi---~v~~v~~~-------~~e~l~~~l~~~T------klV~lespsNPtg~v~dl~~I~~la~~~g~~l 179 (394)
T PRK09028 116 LCDKILKGFGI---ETTYYDPM-------IGEGIRELIRPNT------KVLFLESPGSITMEVQDVPTLSRIAHEHDIVV 179 (394)
T ss_pred HHHHhhhhcce---EEEEECCC-------CHHHHHHhcCcCc------eEEEEECCCCCCCcHHHHHHHHHHHHHcCCEE
Confidence 3 344677 77766532 5577888886543 48999999999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
+||++|+.+....| .. -++|.+..++|||++++-. .|++ +.++....+... ...+
T Consensus 180 vvD~t~a~p~~~~P-l~------~GaDivv~S~tK~l~Gh~d~~~G~~-~~~~~~~~~l~~-~~~~-------------- 236 (394)
T PRK09028 180 MLDNTWASPINSRP-FE------MGVDISIQAATKYIVGHSDVMLGTA-TANEKHWDQLRE-HSYL-------------- 236 (394)
T ss_pred EEECCccccccCCc-cc------cCceEEEEeCCeEecCCCCEEEEEE-ECCHHHHHHHHH-HHHh--------------
Confidence 99999987653332 21 1899999999999998842 4443 455443322110 0000
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecC-----C-----------CeeEE
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAP-----R-----------NFAVV 404 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~-----~-----------~~~~v 404 (486)
.|.-..+..+|..++ |.+.+.-+++++.++|..+.+.|+++|.++ |..| | ..+++
T Consensus 237 ------~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~ 308 (394)
T PRK09028 237 ------MGQCTSPDDVYLAMR--GLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLF 308 (394)
T ss_pred ------cCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceE
Confidence 111235566676665 667889999999999999999999999875 3333 1 24688
Q ss_pred EEEee
Q 038818 405 CFRVL 409 (486)
Q Consensus 405 ~f~~~ 409 (486)
+|.+.
T Consensus 309 sf~l~ 313 (394)
T PRK09028 309 SFVLK 313 (394)
T ss_pred EEEEC
Confidence 99886
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=163.41 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=195.4
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS 183 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 183 (486)
.|....+..++.+.+.+|+.+..+. +. ++++|+|+++++..++.+..+ +++.|++..+++.
T Consensus 116 ~Y~~~~g~~~lr~~ia~~~~~~~~~-~~-------~Iiit~G~~~al~~~~~~l~~-----------pgd~Vlv~~P~y~ 176 (431)
T PRK15481 116 LYGDAPVSPELHAWAARWLRDDCPV-AF-------EIDLTSGAIDAIERLLCAHLL-----------PGDSVAVEDPCFL 176 (431)
T ss_pred hcCCcCCCHHHHHHHHHHHhhccCC-cC-------eEEEecCcHHHHHHHHHHhCC-----------CCCEEEEeCCCcH
Confidence 3443334456766777776654332 22 689999999988777666543 6778888999999
Q ss_pred HHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEee-cCCccccccCCch---HHHHHHHHh
Q 038818 184 ALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCAT-VGTTAITTVDPLG---PLCDIAKRY 259 (486)
Q Consensus 184 s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~-~gtt~~G~idpl~---~I~~i~~~~ 259 (486)
.....++..|+ +++.||+++ + .+|+++|++++++. +.+++++ .++||||.+-+.+ +|.++|+++
T Consensus 177 ~~~~~~~~~g~---~~~~v~~~~--~-g~~~~~l~~~~~~~------~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~ 244 (431)
T PRK15481 177 SSINMLRYAGF---SASPVSVDA--E-GMQPEKLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRNLLARY 244 (431)
T ss_pred HHHHHHHHcCC---eEEeeccCC--C-CCCHHHHHHHHhcC------CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhc
Confidence 99999999999 999999974 2 48999999988642 2345555 8999999998765 999999999
Q ss_pred -CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 260 -SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 260 -g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
++|+++|.+|+-+.. .+ ....+.....--.+..++.|.++...-+|+++.. +.... .+.....+..
T Consensus 245 ~~~~ii~De~Y~~~~~-~~-~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~-~~~~~-~~~~~~~~~~--------- 311 (431)
T PRK15481 245 PQVLVIIDDHFALLSS-SP-YHSVIPQTTQRWALIRSVSKALGPDLRLAFVASD-SATSA-RLRLRLNSGT--------- 311 (431)
T ss_pred CCceEEecCchhhhcc-CC-CCCCCcCCCCCEEEEeeeccccCCCceeEEEeCC-HHHHH-HHHHHHhccc---------
Confidence 999999999976532 11 1111111111124566789999955668876654 33322 2211000000
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhch----HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGV----ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASG 414 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~ 414 (486)
. ....+...++...+.. +.+++..+...+..+.+.+.|++. ++++..+.....+.+.+...
T Consensus 312 --------~---~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~~--- 376 (431)
T PRK15481 312 --------Q---WVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDTD--- 376 (431)
T ss_pred --------c---CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCCC---
Confidence 0 0122333444444422 235667777788888899999886 67654444444444444321
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVA---GIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
...+.+.+.++|+.+..+..+. +..++|+++.. .++++++++++.|.++++
T Consensus 377 -------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~--~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 377 -------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST--LNDAEINRLAADLHQALN 430 (431)
T ss_pred -------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC--CChHHHHHHHHHHHHHhc
Confidence 2345666677888655544432 13589999964 357799999999998764
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=163.71 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=149.4
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH----HHHHHH
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL----QKAAQI 191 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~----~~a~~~ 191 (486)
.++.+.++++.|.+. .+++++|+.|+..++. ... +++.|+++...|.+. ...++.
T Consensus 57 ~~le~~lA~l~g~~~---------~v~~~sG~~ai~~~l~-~l~-----------~Gd~Vlv~~~~y~~~~~~~~~~~~~ 115 (390)
T PRK08064 57 EALEDIIAELEGGTK---------GFAFASGMAAISTAFL-LLS-----------KGDHVLISEDVYGGTYRMITEVLSR 115 (390)
T ss_pred HHHHHHHHHHhCCCC---------eEEECCHHHHHHHHHH-HhC-----------CCCEEEEccCccchHHHHHHHHHHH
Confidence 344456888888763 3566777776654443 211 566777888877642 355667
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|+ +++.++.+ |++++++++++++ .+|+++.++|++|.+.|+++|.++|+++|++++||++|+.
T Consensus 116 ~G~---~v~~v~~~-------d~~~l~~~l~~~t------klV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~ 179 (390)
T PRK08064 116 FGI---EHTFVDMT-------NLEEVAQNIKPNT------KLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLT 179 (390)
T ss_pred cCC---EEEEECCC-------CHHHHHHhcCCCc------eEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCc
Confidence 888 88888753 6888998886543 3789999999999999999999999999999999999976
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+....+ .. -++|.++.++||++++|.+ .|++++++++...+...... ..+
T Consensus 180 ~~~~~~-~~------~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~---------------------~~g 231 (390)
T PRK08064 180 PLLQKP-LD------LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQN---------------------SFG 231 (390)
T ss_pred ccccCc-hh------hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHH---------------------hcC
Confidence 543222 11 1689999999999998876 58788877655432211110 011
Q ss_pred CCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 038818 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE 394 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 394 (486)
....+..+|..+ .|.+-+..++++..+++..+.+.|+++|.+.
T Consensus 232 ~~~~~~~a~l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~ 274 (390)
T PRK08064 232 AVLGVQDCWLVL--RGLKTLHVRLEHSSETANKIALYLQEHPKVQ 274 (390)
T ss_pred CCCCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 112334556544 3556677889999999999999999988663
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.5e-17 Score=161.83 Aligned_cols=292 Identities=18% Similarity=0.207 Sum_probs=191.1
Q ss_pred ccc--cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 104 NWM--SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 104 ~~~--~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
.|. ..|...++|+. +++++|.+ ..++++||+.|+..++.+... +++.|+++...
T Consensus 57 ~Y~r~~~p~~~~Le~~----iA~~~g~~---------~~l~~~sG~~Ai~~al~~ll~-----------~Gd~Vl~~~~~ 112 (400)
T PRK06234 57 IYSRLGNPTSTEVENK----LALLEGGE---------AAVVAASGMGAISSSLWSALK-----------AGDHVVASDTL 112 (400)
T ss_pred cccCCCCccHHHHHHH----HHHHhCCC---------cEEEEcCHHHHHHHHHHHHhC-----------CCCEEEEecCc
Confidence 355 45666666655 66667753 358899999988777655432 56677888777
Q ss_pred chHH----HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHH
Q 038818 182 HSAL----QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAK 257 (486)
Q Consensus 182 H~s~----~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~ 257 (486)
|.+. ...++..|+ +++.++.+ |++++++++++.+ .+|+++.++|++|.+.|+++|+++|+
T Consensus 113 y~~~~~~~~~~~~~~G~---~v~~vd~~-------d~e~l~~~i~~~t------klI~iesP~NPtG~v~dl~~I~~la~ 176 (400)
T PRK06234 113 YGCTFALLNHGLTRYGV---EVTFVDTS-------NLEEVRNALKANT------KVVYLETPANPTLKVTDIKAISNIAH 176 (400)
T ss_pred cchHHHHHHHHHhhCCe---EEEEECCC-------CHHHHHHHhccCC------eEEEEECCCCCCCCcCCHHHHHHHHH
Confidence 7553 345577888 88888642 7899999987643 47888999999999999999999999
Q ss_pred Hh--CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 258 RY--SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 258 ~~--g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
++ |+++++|++|+.+....+ . . .++|.++.+++|+++++.. .|+++.++ +...........+.
T Consensus 177 ~~~~~i~livDea~~~~~~~~~-l-----~-~g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~~~l~~~~~~~~----- 243 (400)
T PRK06234 177 ENNKECLVFVDNTFCTPYIQRP-L-----Q-LGADVVVHSATKYLNGHGDVIAGFVVGKE-EFINQVKLFGIKDM----- 243 (400)
T ss_pred hcCCCCEEEEECCCCchhcCCc-h-----h-hCCcEEEeeccccccCCCCceeEEEEecH-HHHHHHHHHHHHHh-----
Confidence 97 999999999976543221 1 1 1689999999999997653 46666654 33322111000000
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C-----C--------
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P-----R-------- 399 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~-----~-------- 399 (486)
.+....+...|..++ |.+.+..++++..+++.++.+.|+++|.+.-+. | |
T Consensus 244 --------------~g~~l~p~~a~l~~~--~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~ 307 (400)
T PRK06234 244 --------------TGSVIGPFEAFLIIR--GMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQ 307 (400)
T ss_pred --------------cCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHh
Confidence 011234455565555 456677888999999999999999998775432 2 1
Q ss_pred ---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE--------EEe-ee-----eE-------CC--EeE
Q 038818 400 ---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL--------YVS-HG-----MV-------AG--IYF 453 (486)
Q Consensus 400 ---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~--------~~~-~~-----~~-------~~--~~~ 453 (486)
..++++|.+.+. .+...++.+.|.--+.. .+. +. .+ .| .+.
T Consensus 308 ~~~~g~l~s~~l~~~-------------~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l 374 (400)
T PRK06234 308 MSLPGAMISFELKGG-------------VEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGL 374 (400)
T ss_pred CCCCCceEEEEecCc-------------HHHHHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCe
Confidence 245788888632 12234566655322211 111 10 00 11 468
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+|+|++- ||.+.+++.|.++++.+
T Consensus 375 ~R~svGl-----E~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 375 VRLSVGL-----EDVDDIIADLKQALDLI 398 (400)
T ss_pred EEEEeCC-----CCHHHHHHHHHHHHHHH
Confidence 9999953 26777788887777654
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=163.04 Aligned_cols=283 Identities=10% Similarity=0.026 Sum_probs=183.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHHHHHHHHcCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
++++.+++.+|++++ .+++|+|+++++..++.+... ++ +.|+++..++..+...++..|+
T Consensus 64 ~Lr~aia~~~~~~~~-------~I~it~Gs~~~i~~~~~~~~~-----------~g~d~vlv~~P~y~~y~~~~~~~g~- 124 (354)
T PRK04635 64 ELINAYSAYAGVAPE-------QILTSRGADEAIELLIRAFCE-----------PGQDSIACFGPTYGMYAISAETFNV- 124 (354)
T ss_pred HHHHHHHHHhCcCHH-------HEEEeCCHHHHHHHHHHHhcC-----------CCCCeEEEcCCChHHHHHHHHHcCC-
Confidence 345666777898776 789999999988766655432 44 6788888888888888999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh-CceEEeeccccchhc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY-SIWVHVDAAYAGSAC 274 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~-g~~lhvD~a~g~~~~ 274 (486)
+++.+|+++ ++.+|++.+++ + +. +.+|+++.++||||.+-|.+++.++++.. ++++++|++|..+..
T Consensus 125 --~v~~v~~~~--~~~~~~~~l~~-~-~~------~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~ 192 (354)
T PRK04635 125 --GVKALPLTA--DYQLPLDYIEQ-L-DG------AKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCP 192 (354)
T ss_pred --EEEEEecCC--CCCCCHHHHHh-c-cC------CCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhcc
Confidence 999999974 46899998873 3 22 34788889999999999999999998863 799999999965431
Q ss_pred cCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
. ..........+.. .+..+++|+++ .+..+|+++.++ +..........+|- ..
T Consensus 193 ~-~s~~~~~~~~~~~-iv~~S~SK~~~l~GlRlG~~i~~~-~~~~~l~~~~~~~~-----------------------~~ 246 (354)
T PRK04635 193 E-YSVADLLASYPNL-VVLRTLSKAFALAGARCGFTLANE-ELIEILMRVIAPYP-----------------------VP 246 (354)
T ss_pred C-cchHHHHhhCCCE-EEEechHHHhhhhHHHHhhhhCCH-HHHHHHHhhcCCCC-----------------------CC
Confidence 1 1111111111111 35667899987 445578877643 33332111111110 01
Q ss_pred chHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 354 ALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 354 ~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
.....+++..+ +.+.+++..++..+.++++.+.|++++++++. ++..+.+.+++.. ..+
T Consensus 247 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~-----------------~~~ 308 (354)
T PRK04635 247 LPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFDD-----------------VDA 308 (354)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECCC-----------------HHH
Confidence 11222233333 33445666677777888999999988667765 4555554444421 124
Q ss_pred HHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+.+.+.++|+.+.........+++|+++. +++|+++++++|++.
T Consensus 309 ~~~~l~~~gv~v~~~~~~~~~~~lRis~~----~~e~~~~l~~al~~~ 352 (354)
T PRK04635 309 VFKALWDAGIVARAYKDPRLANCIRFSFS----NRAETDKLIGLIRNQ 352 (354)
T ss_pred HHHHHHHCCEEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHHh
Confidence 56666677875432221123568999974 567999999999763
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=160.64 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
.|...++| +.+++++|.+. .++++||++|+..++.+... +++.|+++...+.....
T Consensus 75 ~Pt~~~LE----~~lA~l~g~~~---------~l~~~sG~~Ai~~al~al~~-----------~GD~Vl~~~~~Y~~~~~ 130 (418)
T PLN02242 75 NPTVLNLG----RQMAALEGTEA---------AYCTASGMSAISSVLLQLCS-----------SGGHVVASNTLYGGTHA 130 (418)
T ss_pred ChhHHHHH----HHHHHHhCCCe---------EEEEccHHHHHHHHHHHHhC-----------CCCEEEEcCCcHHHHHH
Confidence 45445555 55788888753 57899999999888776643 66778888877666554
Q ss_pred HH-----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 188 AA-----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 188 a~-----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
.+ +..|+ +++.++. .|+++|++++++. .+.+|+++.++|++|.+.|+++|+++|+++|++
T Consensus 131 ~~~~~~~~~~G~---~~~~~d~-------~d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~ 195 (418)
T PLN02242 131 LLAHFLPRKCNI---TTTFVDI-------TDLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELARIAHEKGVT 195 (418)
T ss_pred HHHHhhhhccCc---eEEEcCC-------CCHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHHHHHHhCCE
Confidence 43 34566 6665543 2899999988652 134788999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||.+|+. ..+.+ .. + ++|.++.+++|+++++.. +|+++ .+++.............
T Consensus 196 livDea~~~-~~~~~--~~----~-g~divv~S~SK~l~g~g~~~gG~iv-~~~~li~~l~~~~~~~~------------ 254 (418)
T PLN02242 196 VVVDNTFAP-MVLSP--AR----L-GADVVVHSISKFISGGADIIAGAVC-GPAELVNSMMDLHHGAL------------ 254 (418)
T ss_pred EEEECCCCc-cCCCH--HH----c-CCcEEEEeCccccCCCCCceEEEEE-cCHHHHHHHHHHhhhhh------------
Confidence 999999954 32221 11 1 589999999999987754 35555 44444332221111000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
. ..+....+..+|..+ .+.+.+..++++..++++++.+.|+++ ++++..|
T Consensus 255 ----~-~~g~~~~~~~A~l~~--~~l~tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP 304 (418)
T PLN02242 255 ----M-LLGPTMNPKVAFELS--ERLPHLSLRMKEHCRRAMEYAKRMKEL-GLKVIYP 304 (418)
T ss_pred ----h-ccCCCCCHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHhC-CCEEECC
Confidence 0 011122333444444 455677778889999999999999998 5777643
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=165.33 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=187.2
Q ss_pred HHHHHHhhhcCCCcCCCCCCcceecCCCCCH-----HHHHHHH-HHh-hcCCC-ccccccChhhHHHHHHHHHHHHHHcC
Q 038818 56 ILQDVQQHIVPGITHWQSPYYFAYFPSSGSI-----AGFLGEM-LSS-GFNVV-GFNWMSSPAATELENIVMDWLGEMLK 127 (486)
Q Consensus 56 il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~-l~~-~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g 127 (486)
+++.|.+....+...|+.|.+-|-..-...+ ....++- +.. .-+.. ....-..|.....|.+ +..+++||
T Consensus 111 ~~~aL~~y~~~~~~sfh~PGHkgG~~f~~~p~g~~f~~f~Gen~fr~Dlte~~~~LddL~~~eG~i~eAq--~~AA~~fg 188 (720)
T PRK13578 111 FFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADMCNADVKLGDLLIHEGAAKDAQ--KHAAKVFN 188 (720)
T ss_pred HHHHHHHHHhCCCceeeCCcCCCCCCCCcChhhhHHHHHhhhhhhhhhcccccccCCCCCCCChHHHHHH--HHHHHHhC
Confidence 5566666666777788888665422100111 2223221 111 11111 1122233333444444 88999999
Q ss_pred CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH-HHHcCCCCCCeEEEecCC
Q 038818 128 LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA-AQIAGIDPKNFRAIKTTK 206 (486)
Q Consensus 128 ~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a-~~~~G~g~~~v~~v~~d~ 206 (486)
.+.+| ++++|+|.+|..++.++.. +++.|++...+|-|+..+ +.+.|+ ..++++..-
T Consensus 189 Ad~ty--------FlvNGTS~gn~a~i~a~~~-----------~Gd~VLvdRN~HKSv~hgaLiLsGa---~PVYl~P~~ 246 (720)
T PRK13578 189 ADKTY--------FVLNGTSASNKVVTNALLT-----------PGDLVLFDRNNHKSNHHGALIQAGA---TPVYLETAR 246 (720)
T ss_pred CCceE--------EEeCChhHHHHHHHHHhcC-----------CCCEEEeecccHHHHHHHHHHHcCC---eEEEeeccc
Confidence 98875 8899999999887777665 788999999999999996 889999 999887543
Q ss_pred CCC---cccCH-----HHHHHHHHHH-HH--CCCcc-EEEEeecCCccccccCCchHHHHH-HHHhCceEEeeccccchh
Q 038818 207 SSS---FTLTP-----ESLQAAIDLD-IQ--AGLIP-LFLCATVGTTAITTVDPLGPLCDI-AKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 207 ~~~---~~~d~-----~~L~~~l~~~-~~--~g~~p-~~vv~~~gtt~~G~idpl~~I~~i-~~~~g~~lhvD~a~g~~~ 273 (486)
+.. +.+++ +.++++|++. .+ +..+| .++++|.+| ..|.+-++++|+++ |+.++ +||||+|||+.+
T Consensus 247 n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 247 NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 221 23454 4599998865 11 12244 567777765 57999999999998 78888 999999999988
Q ss_pred ccCccchhhh--cCCCCCC----ceeeccccccCCCCcceEEEeeCch-----------HHHHHhcCCcccccCccCCCC
Q 038818 274 CICPEFRHFI--DGIEGAD----SFSLNAHKWFFTTLDCCCLWVKNPN-----------ALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 274 ~~~~~~~~~~--~~~~~aD----si~~~~hK~l~~p~~~g~~~~~~~~-----------~~~~~~~~~~~y~~~~~~~~~ 336 (486)
.+.|.++... ..-.++| .++-|.||.+.+--+++++.+++.. .+.+++.
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~-------------- 390 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFM-------------- 390 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHH--------------
Confidence 8877543321 1113789 9999999999988889999987642 2222221
Q ss_pred CccCCCCccccCCCCCCchHHHHHH----HHh-chHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEecC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVL----RSF-GVANLRNFLRSHVRMAQLFQELV-GGDNRFEIVAP 398 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l----~~~-g~~g~~~~~~~~~~~a~~l~~~L-~~~~~~~~~~~ 398 (486)
..+.|.+. ..+.+++ +.+ +..| ++++++..+++..+++.| +.+++|+++.+
T Consensus 391 --------m~qSTSPs--Y~LmASLDva~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p 447 (720)
T PRK13578 391 --------LHASTSPF--YPLFAALDVNAKMHEGESG-RRLWMECVKLGIEARKLILARCKLIRPFIP 447 (720)
T ss_pred --------HHcCCChH--HHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHhCCCeeeccc
Confidence 01111111 1111221 112 2223 457778888888898888 77788888743
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-17 Score=162.10 Aligned_cols=286 Identities=15% Similarity=0.149 Sum_probs=186.3
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH-HcCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ-IAGID 195 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~-~~G~g 195 (486)
.+.++++++.|.+ .+++++||++|+..++.+... +++.|+++...|.+....+. ..+.+
T Consensus 56 ~L~~~lA~l~g~~---------~~i~~~sg~~Ai~~~l~~l~~-----------~GD~Vl~~~~~y~~~~~~~~~~~~~~ 115 (386)
T PRK08045 56 VVQRALAELEGGA---------GAVLTNTGMSAIHLVTTVFLK-----------PGDLLVAPHDCYGGSYRLFDSLAKRG 115 (386)
T ss_pred HHHHHHHHHhCCC---------eEEEECCHHHHHHHHHHHHcC-----------CCCEEEEcCCCcHHHHHHHHHHHhhC
Confidence 3446678888742 478999999888776665432 66778888888875443322 22221
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI 275 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~ 275 (486)
.-++..++ ..|++++++++++.+ .+|+++.++|++|.+-|+++|.++|+++|++++||++|+.+...
T Consensus 116 gi~v~~vd-------~~d~e~l~~~l~~~t------klV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~ 182 (386)
T PRK08045 116 CYRVLFVD-------QGDEQALRAALAEKP------KLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQ 182 (386)
T ss_pred CeEEEEeC-------CCCHHHHHHhcccCC------eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC
Confidence 11455442 358999999886543 47888999999999999999999999999999999999765432
Q ss_pred CccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 276 CPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 276 ~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
.+ .. .++|.++.++|||++++.+ .|++++++++...+.. ....++ +-...
T Consensus 183 ~p-l~------~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~-~~~~~~--------------------g~~~~ 234 (386)
T PRK08045 183 NP-LA------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELA-WWANNI--------------------GVTGG 234 (386)
T ss_pred Cc-hh------hCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHH-HHHHhc--------------------CCCCC
Confidence 22 11 2789999999999998775 6766666665433211 111111 11134
Q ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC-----C-----------CeeEEEEEeecCCCCCC
Q 038818 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP-----R-----------NFAVVCFRVLPSASGLG 416 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~-----~-----------~~~~v~f~~~~~~~~~~ 416 (486)
++..|+.++.+ +.+..++++..+++..+.+.|+++|.++-+ .| | ..++++|.+...
T Consensus 235 p~~~~l~~rgl--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~----- 307 (386)
T PRK08045 235 AFDSYLLLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----- 307 (386)
T ss_pred HHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCc-----
Confidence 56667777644 668899999999999999999999988543 22 1 145788888532
Q ss_pred CCCCccchHHHHHHHHHHHHh--cCc-------EEEeee-----eE-------CC--EeEEEEEecCCCCcHHHHHHHHH
Q 038818 417 DGKANEGANELNRKLLESINA--SGQ-------LYVSHG-----MV-------AG--IYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~l~~--~g~-------~~~~~~-----~~-------~~--~~~lR~~~~~~~tt~~did~~i~ 473 (486)
.+...++.+.|.- .+. +...+. .. .| .+.+|+|++- ||+|.+++
T Consensus 308 --------~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~ 374 (386)
T PRK08045 308 --------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI-----EDGEDLIA 374 (386)
T ss_pred --------HHHHHHHHHhccceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHH
Confidence 1223455554421 111 011111 00 12 4689999952 26777788
Q ss_pred HHHHHHHHHh
Q 038818 474 VVQEKLDGIL 483 (486)
Q Consensus 474 ~l~~~~~~l~ 483 (486)
.|.+.++...
T Consensus 375 dl~~al~~~~ 384 (386)
T PRK08045 375 DLENGFRAAN 384 (386)
T ss_pred HHHHHHHHhh
Confidence 8877776543
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=160.23 Aligned_cols=288 Identities=15% Similarity=0.068 Sum_probs=190.5
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.+|++++ +.++|+|+++++..++.+... +++.|+++..++......++..|+
T Consensus 90 ~lr~~ia~~~~~~~~-------~I~~t~Ga~~~i~~~~~~~~~-----------~gd~Vlv~~P~y~~y~~~~~~~g~-- 149 (380)
T PLN03026 90 RLRAALAEDSGLESE-------NILVGCGADELIDLLMRCVLD-----------PGDKIIDCPPTFGMYVFDAAVNGA-- 149 (380)
T ss_pred HHHHHHHHHhCcChh-------hEEEcCCHHHHHHHHHHHhcC-----------CCCEEEEcCCChHHHHHHHHHcCC--
Confidence 466778888888765 688999999888766554432 567788888888777788888999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.+|.++ ++.+|+++|+++++.. .+.+|+++.++|+||.+-|.+++.++++.. +++++|++|..+.. .
T Consensus 150 -~~~~v~~~~--~~~~d~~~l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~-~ 219 (380)
T PLN03026 150 -EVIKVPRTP--DFSLDVPRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFST-Q 219 (380)
T ss_pred -EEEEeecCC--CCCcCHHHHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcC-C
Confidence 999999864 5789999999988421 134788889999999999999999999865 99999999965432 1
Q ss_pred ccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCch
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL 355 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l 355 (486)
......+... .-..+..++.|.++ .....|+++.. +..+........+| ....+
T Consensus 220 ~~~~~~~~~~-~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~~~~-----------------------~~~~~ 274 (380)
T PLN03026 220 ESRMKWVKKY-DNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAKQPY-----------------------NVSVA 274 (380)
T ss_pred cchHHHHHhC-CCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhcCCC-----------------------CCCHH
Confidence 1111111111 12356678899997 44567777654 33333222111111 01223
Q ss_pred HHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHH
Q 038818 356 KLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLES 434 (486)
Q Consensus 356 ~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 434 (486)
...++...+. .+.+++..+...+.++++.+.|++++++++ .++..+.+.+.+.+.. + ..++.+.
T Consensus 275 ~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~~------------~--~~~~~~~ 339 (380)
T PLN03026 275 AEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSGR------------D--AKKLKED 339 (380)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCCC------------C--HHHHHHH
Confidence 3333444332 244667777778888899999998865554 4555666666654210 1 2356777
Q ss_pred HHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 435 INASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 435 l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
|.++|+.+.......+..++|+++. +.+++++++++|+++
T Consensus 340 l~~~gI~v~~~~~~~~~~~lRis~~----~~~~~~~l~~al~~~ 379 (380)
T PLN03026 340 LAKMGVMVRHYNSKELKGYIRVSVG----KPEHTDALMEALKQL 379 (380)
T ss_pred HHHCCeEEEECCCCCCCCEEEEecC----CHHHHHHHHHHHHHh
Confidence 7778875433322233568999985 456899999998763
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-17 Score=160.62 Aligned_cols=288 Identities=12% Similarity=0.071 Sum_probs=188.4
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
.+++.+++.+|++.+ +.++|+|+++++...+.+... +++.|++...+|......++..|+
T Consensus 75 ~lr~~ia~~~~~~~~-------~i~~t~G~~~~l~~~~~~~~~-----------~gd~vli~~P~y~~~~~~~~~~g~-- 134 (371)
T PRK05166 75 ALREAIAARTGVPAD-------RIILGNGSEDLIAVICRAVLR-----------PGDRVVTLYPSFPLHEDYPTMMGA-- 134 (371)
T ss_pred HHHHHHHHHhCcCHH-------HEEEcCCHHHHHHHHHHHhcC-----------CCCEEEEcCCChHHHHHHHHHcCC--
Confidence 466777888888654 789999998887655544322 667788888999888889999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH--hCceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR--YSIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~--~g~~lhvD~a~g~~~~ 274 (486)
+++.+|+++ ++.+|++++++++++.+ .+|+++.++|+||.+-|.+++.++++. +++++++|++|+.+.
T Consensus 135 -~~~~v~~~~--~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~- 204 (371)
T PRK05166 135 -RVERVTVTP--DLGFDLDALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYA- 204 (371)
T ss_pred -eEEEeecCC--CCCCCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhc-
Confidence 999999975 46899999999886543 367789999999999988777777664 489999999997654
Q ss_pred cCccchhhhcCCC-CC--CceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 275 ICPEFRHFIDGIE-GA--DSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 275 ~~~~~~~~~~~~~-~a--Dsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
........+..+. .- -.+..++.|.++ ....+|++++.++............+ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~-----------------~----- 262 (371)
T PRK05166 205 AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPF-----------------N----- 262 (371)
T ss_pred CCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCC-----------------C-----
Confidence 2111111111111 11 245667899998 55568887776665433221111100 0
Q ss_pred CCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 351 RFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 351 ~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
...+...+++..+ ..+.+++..+...+..+++.+.|++. ++++. ++..+.+.+.... + ..
T Consensus 263 -~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~~--------------~--~~ 323 (371)
T PRK05166 263 -VNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYRIA-PSRANFLFFDARR--------------P--AS 323 (371)
T ss_pred -CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeCCC--------------C--HH
Confidence 1122222233332 23456777777888888999999887 77653 5554444443221 1 24
Q ss_pred HHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
++.+.+.++|+.+..........++|+++. +.++.++++++|+++.
T Consensus 324 ~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~----~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 324 AVAEALLRQGVIVKPWKQPGFETFIRVSIG----SPEENDHFVAALDKVL 369 (371)
T ss_pred HHHHHHHHCCeEEecCCCCCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 567777778875443322233678999985 3557888888887764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-16 Score=156.99 Aligned_cols=295 Identities=16% Similarity=0.065 Sum_probs=194.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA 188 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 188 (486)
+....+.+.+.+|+.+.+|.+.+ ..++++|+|+++++..++.+..+ +++.|++...++..+..+
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~-----~~~I~it~G~~~~l~~~~~~~~~-----------~gd~v~v~~P~y~~~~~~ 128 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLT-----VENVWAANGSNEILQQLLQAFGG-----------PGRTALGFVPSYSMHPII 128 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCC-----hhhEEECCCHHHHHHHHHHHhcC-----------CCCEEEEeCCChHHHHHH
Confidence 45577888888999888776432 12788999999888776666543 667788888899888888
Q ss_pred HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 189 AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 189 ~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
++..|. +++.+|.++ ++.+|+++|++++++.. +.+|+++.++|++|.+-+.+++.++|+.+++++++|.+
T Consensus 129 ~~~~g~---~~~~~~~~~--~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~ 198 (368)
T PRK03317 129 ARGTHT---EWVEGPRAA--DFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEA 198 (368)
T ss_pred HHhcCC---eeEEcccCC--CCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCC
Confidence 888888 888887653 57899999999987431 23577788999999999999999999999999999999
Q ss_pred ccchhccC-ccchhhhcCCCCCCc-eeeccccccCC-CCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCCCc
Q 038818 269 YAGSACIC-PEFRHFIDGIEGADS-FSLNAHKWFFT-TLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 269 ~g~~~~~~-~~~~~~~~~~~~aDs-i~~~~hK~l~~-p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~ 344 (486)
|+.+.... +........ .-+. +..++.|.++. ...+|+++.. +.... .+.. ...+
T Consensus 199 y~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~g~~GlRiG~~~~~-~~~~~-~l~~~~~~~----------------- 257 (368)
T PRK03317 199 YAEFRRSGTPSALTLLPE--YPRLVVSRTMSKAFAFAGGRLGYLAAA-PAVVD-ALRLVRLPY----------------- 257 (368)
T ss_pred chhhcccCCcCHHHHHHh--CCCEEEEEechhhhccchhhhhhhhCC-HHHHH-HHHhcCCCC-----------------
Confidence 98643211 111111111 1133 44588999974 4556777764 33332 2211 1111
Q ss_pred cccCCCCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccc
Q 038818 345 QITLSRRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEG 423 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~ 423 (486)
....+...++...+. .+.+.+.+++..+..+++.+.|++. ++++. ++..+.+.|...+.
T Consensus 258 ------~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------ 317 (368)
T PRK03317 258 ------HLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL-GLRVA-PSDANFVLFGRFAD------------ 317 (368)
T ss_pred ------CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEeC-CCCCcEEEEeccCC------------
Confidence 012233333333331 2344555666777788888889886 77764 45555555422111
Q ss_pred hHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 424 ANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 424 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
...+.+.+.++|+.+ .+. ...+++|+++. +.+++++++++|+++.+.
T Consensus 318 ----~~~~~~~l~~~Gv~v-~~~--~~~~~iRi~~~----~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 318 ----RHAVWQGLLDRGVLI-RDV--GIPGWLRVTIG----TPEENDAFLAALAEVLAT 364 (368)
T ss_pred ----HHHHHHHHHHCCEEE-EeC--CCCCeEEEecC----CHHHHHHHHHHHHHHHHH
Confidence 235667777788754 332 22468999974 456899999999988754
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=158.60 Aligned_cols=285 Identities=12% Similarity=0.057 Sum_probs=186.8
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.+|.+.+ ..++|+|+++++..++.+..+ +++.|+++..++..+...+...|.
T Consensus 68 ~lr~~ia~~~~~~~~-------~i~~t~G~~~~l~~~~~~~~~-----------~gd~v~~~~p~y~~~~~~~~~~g~-- 127 (359)
T PRK03158 68 ELRTKVAKHLGVDEE-------QLLFGAGLDEVIQMISRALLN-----------PGTNTVMAEPTFSQYRHNAIIEGA-- 127 (359)
T ss_pred HHHHHHHHHhCCCHH-------HEEECCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCHHHHHHHHHHcCC--
Confidence 345566666777654 689999998887655444322 567788888899888889999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH--hCceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR--YSIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~--~g~~lhvD~a~g~~~~ 274 (486)
+++.+|++ ++.+|++++++++++. +.+|+++.++|+||.+-|.++|.++++. +|+++++|++|..+..
T Consensus 128 -~~~~~~~~---~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~ 197 (359)
T PRK03158 128 -EVREVPLK---DGGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVT 197 (359)
T ss_pred -eEEEEecC---CCCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcC
Confidence 99999987 3579999999887543 2367778999999999999999999887 5999999999976543
Q ss_pred cCc--cchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 275 ICP--EFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 275 ~~~--~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
... .....+... .-..+..++.|.++.| ..+|+++..+ +...........+ .
T Consensus 198 ~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~v~~~-~~~~~~~~~~~~~-----------------------~ 252 (359)
T PRK03158 198 AEDYPDTLPLLEKY-ENLIVLRTFSKAYGLAALRVGYGIASE-ELIEKLNIARPPF-----------------------N 252 (359)
T ss_pred CcccccHHHHHHhc-CCEEEEEechHhhcCcchhhehhcCCH-HHHHHHHHhcCCC-----------------------C
Confidence 211 100111111 1235556789999844 5578877643 3332211111000 1
Q ss_pred CCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+...++...+. .+.+++..+...+..+++.+.|++. ++.+. ++..+.+.+.+... ..+
T Consensus 253 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~~~----------------~~~ 314 (359)
T PRK03158 253 TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTGRD----------------ANE 314 (359)
T ss_pred CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECCCC----------------HHH
Confidence 13344444444442 2345555566677778888888887 67764 44444444443211 235
Q ss_pred HHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+.+.+.++|+.+.++..+...+++|++++ +.+++++++++|+++
T Consensus 315 ~~~~l~~~gv~v~~g~~f~~~~~iRi~~~----~~~~~~~l~~al~~~ 358 (359)
T PRK03158 315 LFEALLKKGYIVRSGAALGFPTGVRITIG----LKEQNDKIIELLKEL 358 (359)
T ss_pred HHHHHHHCCeEEeeCCCCCCCCeEEEecC----CHHHHHHHHHHHHHh
Confidence 66777777876555444434678999974 567999999999875
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-16 Score=158.35 Aligned_cols=319 Identities=12% Similarity=0.058 Sum_probs=198.0
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..|....+..++.+.+.+++.+.+|.+... ....++|+|+++++..++.+... +++.|+++..++
T Consensus 62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~----~~~I~it~G~~~al~~~~~~l~~-----------~gd~Vl~~~P~y 126 (405)
T PRK09148 62 HRYSASKGIPGLRRAQAAYYARRFGVKLNP----DTQVVATLGSKEGFANMAQAITA-----------PGDVILCPNPSY 126 (405)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEcCChHHHHHHHHHHhcC-----------CCCEEEEcCCCC
Confidence 456555556789899999998887864221 01589999999998776665543 567788888999
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc---hHHHHHHHHh
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL---GPLCDIAKRY 259 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl---~~I~~i~~~~ 259 (486)
..+...+...|+ +++.+|++.++. ++++++++++... ..+.+|+.+.++||||.+-+. ++|.++|++|
T Consensus 127 ~~~~~~~~~~g~---~v~~v~~~~~~~---~~~~l~~~~~~~~---~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~ 197 (405)
T PRK09148 127 PIHAFGFIMAGG---VIRSVPAEPDEE---FFPALERAVRHSI---PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKH 197 (405)
T ss_pred cccHHHHHhcCC---EEEEEeCCCCCC---CccCHHHHHhhcc---ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 888888899999 999999875433 3445555554321 124678889999999999775 6888899999
Q ss_pred CceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 260 SIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 260 g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
|+++++|++|+.+.......... +.+......+..++.|.++.| .-+|+++. ++.... .+.....+...
T Consensus 198 ~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~-~~~~i~-~l~~~~~~~~~------ 269 (405)
T PRK09148 198 DIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG-NERLIA-ALTRVKSYLDY------ 269 (405)
T ss_pred CeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC-CHHHHH-HHHHHHHHhcc------
Confidence 99999999997644211111111 111111223467889999844 45788765 333332 22111111100
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE-EeecCCC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF-RVLPSAS 413 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~ 413 (486)
....+...++...+ +.+.+++..+...+..+++.+.|+++ ++.+. +|..+.+.| ++.+..
T Consensus 270 --------------~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~-~p~~g~f~~~~l~~~~- 332 (405)
T PRK09148 270 --------------GAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA-GWDIP-PPAASMFAWAPIPEAF- 332 (405)
T ss_pred --------------CCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCeeEEEEEECCCcc-
Confidence 01122222333333 23456667777888888999999886 66644 444444443 443210
Q ss_pred CCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 414 GLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
...+ ..++.+.+. +.|+.+..+..+. +..++|+++. .+.+.+++.++.|.++++++-
T Consensus 333 --------~~~~--~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~---~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 333 --------RHLG--SLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV---ENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred --------CCCC--HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHHH
Confidence 0001 134555554 5687555444332 2578999984 356788888888888776543
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=161.03 Aligned_cols=234 Identities=13% Similarity=0.151 Sum_probs=165.2
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-- 184 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-- 184 (486)
..|...++| +.++++.|.+ ..+++++|+.|+..++.+... +++.|+++...|..
T Consensus 68 ~~p~~~~le----~~lA~l~g~~---------~al~~~sG~~Ai~~~l~all~-----------~Gd~Vl~~~~~~~~t~ 123 (403)
T PRK07810 68 GNPTVSMFE----ERLRLIEGAE---------ACFATASGMSAVFTALGALLG-----------AGDRLVAARSLFGSCF 123 (403)
T ss_pred CCchHHHHH----HHHHHHhCCC---------cEEEECChHHHHHHHHHHHhC-----------CCCEEEEccCCcchHH
Confidence 445545555 4578888865 368899999888776655432 56678878765532
Q ss_pred --HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 185 --LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 185 --~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
+.+.++..|+ +++.++. .|+++++++|++++ .+|+++.++|++|.+-|+++|+++|+++|++
T Consensus 124 ~~~~~~~~~~G~---~v~~vd~-------~d~~~l~~ai~~~t------klV~~esp~Nptg~v~dl~~I~~la~~~g~~ 187 (403)
T PRK07810 124 VVCNEILPRWGV---ETVFVDG-------EDLSQWEEALSVPT------QAVFFETPSNPMQSLVDIAAVSELAHAAGAK 187 (403)
T ss_pred HHHHHHHHHcCc---EEEEECC-------CCHHHHHHhcCcCc------eEEEEECCCCCCCeecCHHHHHHHHHHcCCE
Confidence 3456677788 8888863 28999999987654 3788999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||++|+.+....+ .. .++|.++.++||+++++.. .|+++.+++. +.+.+. .+...
T Consensus 188 vivD~a~a~~~~~~~-~~------~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~-~~~~l~---~~~~~---------- 246 (403)
T PRK07810 188 VVLDNVFATPLLQRG-LP------LGADVVVYSGTKHIDGQGRVLGGAILGDREY-IDGPVQ---KLMRH---------- 246 (403)
T ss_pred EEEECCCCccccCCh-hh------cCCcEEEccCCceecCCcCceeEEEEeChHH-HHHHHH---HHHHH----------
Confidence 999999976544222 11 1689999999999987543 4666655542 221111 11110
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C-----C-----------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P-----R-----------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~-----~-----------~~~~ 403 (486)
.+.......+|+.++ +.+.+..++++..+++.++.+.|+++|.++-+. | | ..++
T Consensus 247 -------~g~~~s~~~a~l~l~--~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~ 317 (403)
T PRK07810 247 -------TGPALSAFNAWVLLK--GLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTV 317 (403)
T ss_pred -------hCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceE
Confidence 111234566676665 557889999999999999999999999876443 2 1 2458
Q ss_pred EEEEeec
Q 038818 404 VCFRVLP 410 (486)
Q Consensus 404 v~f~~~~ 410 (486)
++|.+..
T Consensus 318 ~s~~l~~ 324 (403)
T PRK07810 318 VTFELDA 324 (403)
T ss_pred EEEEEcC
Confidence 8888864
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=161.77 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=157.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH-
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ- 186 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~- 186 (486)
+|....+| +.++++.|.+ .++++++|+.|+..++.+... +++.|+++...|.+..
T Consensus 62 ~p~~~~le----~~lA~l~g~~---------~al~~~SG~~Ai~~al~all~-----------pGd~VIv~~~~y~~t~~ 117 (427)
T PRK05994 62 NPTNAVLE----ERVAALEGGT---------AALAVASGHAAQFLVFHTLLQ-----------PGDEFIAARKLYGGSIN 117 (427)
T ss_pred CccHHHHH----HHHHHHhCCC---------cEEEEcCHHHHHHHHHHHHhC-----------CCCEEEEecCcchhHHH
Confidence 34444444 5578888765 358889999999877766533 5677888888887533
Q ss_pred ---HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 187 ---KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 187 ---~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
..+...|+ +++.++++ |++++++++++.+ .+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 118 ~~~~~~~~~G~---~v~~vd~~-------d~~~l~~ai~~~t------klV~vesp~NptG~v~dl~~I~~la~~~gi~l 181 (427)
T PRK05994 118 QFGHAFKSFGW---QVRWADAD-------DPASFERAITPRT------KAIFIESIANPGGTVTDIAAIAEVAHRAGLPL 181 (427)
T ss_pred HHHHHHHhcCc---EEEEECCC-------CHHHHHHhcCcCC------eEEEEECCCCCCCeecCHHHHHHHHHHcCCEE
Confidence 34666788 88887642 7899999887543 47888999999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCch-HHHHHhcCCcccccCccCCCCCccCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPN-ALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
++|++++.+....+ .. .++|.++.++||+++++.+ .|.+++.... .+.. ....+++.......++..-.
T Consensus 182 ivD~a~a~~~~~~p-l~------~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~--~k~~~~~~~~~~~~~~~~~~ 252 (427)
T PRK05994 182 IVDNTLASPYLIRP-IE------HGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSK--SGKYPMLSEPRPEYHGLVLH 252 (427)
T ss_pred EEECCccccccCCc-cc------cCCcEEEEcCccccCCCCCcEEEEEEeCCcccccc--ccccccccCCcchhhhhhHH
Confidence 99999976543222 11 2899999999999997754 4555553221 1100 00001111100000000000
Q ss_pred ---C----------CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 342 ---K----------DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 342 ---~----------~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
. ......|.....+.+|..++ |.+.+..++++..+++.++.+.|+++|.++-
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~--~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~ 317 (427)
T PRK05994 253 ETFGNFAFAIAARVLGLRDLGPAISPFNAFLILT--GIETLPLRMQRHSDNALAVAEWLKGHPKVSW 317 (427)
T ss_pred HHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHc--CcccHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 0 00011233345566676665 5688899999999999999999999998753
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-17 Score=161.27 Aligned_cols=226 Identities=16% Similarity=0.189 Sum_probs=157.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~ 192 (486)
++.+.++++.|.+. .++++||+.|+..++ .... +++.|+++...+.+ +...+...
T Consensus 56 ~le~~la~l~g~~~---------~~~~~sG~~ai~~~~-~ll~-----------~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 114 (366)
T PRK08247 56 VLEQAIADLEGGDQ---------GFACSSGMAAIQLVM-SLFR-----------SGDELIVSSDLYGGTYRLFEEHWKKW 114 (366)
T ss_pred HHHHHHHHHhCCCc---------EEEEcCHHHHHHHHH-HHhC-----------CCCEEEEecCCcCcHHHHHHHHhhcc
Confidence 34456888888753 478888888775443 2221 45667777777665 34455667
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|+ +++.++. .|+++|++++++++ .+|+++.++|++|.+.++++|+++|+++|+++++|++|+..
T Consensus 115 G~---~v~~vd~-------~d~~~l~~~i~~~t------klv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~ 178 (366)
T PRK08247 115 NV---RFVYVNT-------ASLKAIEQAITPNT------KAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTP 178 (366)
T ss_pred Cc---eEEEECC-------CCHHHHHHhcccCc------eEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 88 8888764 38899999887643 47888999999999999999999999999999999999665
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
....+ .. .++|.++.+++|+++++.+ .|++..+++......... ..+. +.
T Consensus 179 ~~~~p-~~------~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~-~~~~--------------------g~ 230 (366)
T PRK08247 179 VLQRP-LE------EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY-QNAA--------------------GA 230 (366)
T ss_pred cccCc-hh------cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH-HHhc--------------------CC
Confidence 43322 11 2689999999999997644 566665544443222110 0000 01
Q ss_pred CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-CCCeeEEEEEee
Q 038818 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-PRNFAVVCFRVL 409 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~v~f~~~ 409 (486)
....+..|+.++ +.+.+..++++..++++.+.+.|+++|++..+. |+..++++|.+.
T Consensus 231 ~~s~~~a~l~~~--~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 231 VLSPFDSWLLIR--GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred CCChHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 123344566665 445677788888999999999999999987544 447889999764
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=149.28 Aligned_cols=298 Identities=14% Similarity=0.139 Sum_probs=205.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
...||+ .|++|.+-+.. ++.+++--||-..|...-.. +|+.+||..+-.|.|+...++
T Consensus 218 hv~LE~----eLA~LHqK~aA---------LlFsSCfVANDstLftLak~---------lpgcei~SD~gNHASMI~GIr 275 (570)
T KOG1360|consen 218 HVRLEA----ELADLHQKEAA---------LLFSSCFVANDSTLFTLAKK---------LPGCEIFSDEGNHASMIQGIR 275 (570)
T ss_pred hhhHHH----HHHHHhcCcce---------eeeeeeeeccchHHHHHHHH---------CCCcEEeccccchHHHHHHhh
Confidence 445555 47888766543 44455455554444333222 288899988889999999999
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
..++ .-+.+. +.|+++|+++|+.... .+|.+|......++.|++.||+||++++++||+...+|+.|+
T Consensus 276 ns~v---~K~IFr-------HND~~hL~~lL~~~~~--svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHA 343 (570)
T KOG1360|consen 276 NSRV---PKHIFR-------HNDLDHLEQLLQSSPK--SVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHA 343 (570)
T ss_pred hcCC---cceeec-------cCCHHHHHHHHHhCCC--CCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhh
Confidence 9888 444444 4499999999987533 468899999999999999999999999999999999999987
Q ss_pred chhccCccchhh--hcC-CCCCCceeeccccccCCCCcceEEEeeCchHHHHHh-cCCcccccCccCCCCCccCCCCccc
Q 038818 271 GSACICPEFRHF--IDG-IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKAL-STNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 271 ~~~~~~~~~~~~--~~~-~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
.+.+.. ..... -+| +.++|.|+....|.++.- |..+.....+ .+.+ +..++|++....
T Consensus 344 VGlYG~-rGaGvgerdGvm~kvDiIsGTLgKafGcV---GGYIAat~~L-vDmiRSyAaGFIFTTSL------------- 405 (570)
T KOG1360|consen 344 VGLYGP-RGAGVGERDGVMHKVDIISGTLGKAFGCV---GGYIAATRKL-VDMIRSYAAGFIFTTSL------------- 405 (570)
T ss_pred hccccC-CCCCccccCCcchhhhhcccchhhhcccc---cceehhhhhH-HHHHHHhcCceEEecCC-------------
Confidence 665422 11110 123 468999999999998753 3333333333 3333 456777765321
Q ss_pred cCCCCCCc-hHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccch
Q 038818 347 TLSRRFRA-LKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGA 424 (486)
Q Consensus 347 ~~sr~~~~-l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~ 424 (486)
+... ..+..+.+.+ +.+| +...+...++..|+++.|.++ |+.++..| +.+|..++.+
T Consensus 406 ----PP~vl~GAleaVr~lk~~eg-~~lR~~hqrnv~~~kq~l~~~-GiPVi~~p-SHIiPv~vgd-------------- 464 (570)
T KOG1360|consen 406 ----PPMVLAGALEAVRILKSEEG-RVLRRQHQRNVKYVKQLLMEL-GIPVIPNP-SHIIPVRVGD-------------- 464 (570)
T ss_pred ----ChHHHHhHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHc-CCcccCCC-cceeeeeccC--------------
Confidence 1111 1223334433 3455 345566678889999999987 88887544 5888888765
Q ss_pred HHHHHHHHHHHHhcCcEEE----eeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 425 NELNRKLLESINASGQLYV----SHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 425 ~~~~~~l~~~l~~~g~~~~----~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..+++++.+.|+.+..+++ .|++..|...||+..+ |+.|++.++.+++++..+.+++
T Consensus 465 a~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPT-P~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 465 AALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPT-PHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred HHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 3567778887765544444 3556678889999985 7778989999999999887654
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=160.87 Aligned_cols=316 Identities=12% Similarity=0.061 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
....+.++.+.+++++|.+.+ ..++++|||+||..|+.+++... .++.+++.....|.+...+..
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~-------~v~~~~sgsea~~~al~~~~~~~--------~~~~ii~~~~~yhg~~~~~~~ 141 (413)
T cd00610 77 YNEPAVELAELLLALTPEGLD-------KVFFVNSGTEAVEAALKLARAYT--------GRKKIISFEGAYHGRTLGALS 141 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEcCcHHHHHHHHHHHHHHHc--------CCCeEEEECCCcCCccHHHHH
Confidence 456777888899999985433 68999999999999999887531 034445555566766555554
Q ss_pred HcCCC---------CCCeEEEecCCC----CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHH
Q 038818 191 IAGID---------PKNFRAIKTTKS----SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLC 253 (486)
Q Consensus 191 ~~G~g---------~~~v~~v~~d~~----~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~ 253 (486)
..+-. ...++.+|.++. .++..|+++|++.+++. +..+.+|+++...+++|.+.| +++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~ 218 (413)
T cd00610 142 LTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALR 218 (413)
T ss_pred hcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 43321 124677776521 12355899999988652 123557777778888898877 99999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
++|++||+++++|++|+++............++ ..|.+++ .|+++.++++|+++.++ +... .+. ...+...
T Consensus 219 ~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~-~~d~~t~--sK~l~~g~~~g~~~~~~-~~~~-~~~-~~~~~~~--- 289 (413)
T cd00610 219 ELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVTL--GKGLGGGLPLGAVLGRE-EIMD-AFP-AGPGLHG--- 289 (413)
T ss_pred HHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-CCCeEEE--cccccCccccEEEEEcH-HHHH-hhc-cCCCCCC---
Confidence 999999999999999976421111101011122 3466655 49999888899887753 3332 220 0000000
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC---eEEecCCCeeEEEEEeec
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR---FEIVAPRNFAVVCFRVLP 410 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~ 410 (486)
. +. ++-.....++..+++.+.. .++.++..++.+++++.|+++.. +.........++++.+..
T Consensus 290 --------~--t~-~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (413)
T cd00610 290 --------G--TF-GGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVK 355 (413)
T ss_pred --------C--CC-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEec
Confidence 0 00 1111122334444554432 34567777888888888765421 111112345677777754
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.... ..........+.+.+.++|+.+ .+.. ...+|++++ ...+++||+++++.|+++
T Consensus 356 ~~~~------~~~~~~~~~~~~~~l~~~gv~v-~~~~---~~~lR~~~~-~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 356 DRAT------KPPDKELAAKIIKAALERGLLL-RPSG---GNVIRLLPP-LIITEEEIDEGLDALDEA 412 (413)
T ss_pred CCCc------CCcchHHHHHHHHHHHHCCeEE-eecC---CCEEEEECC-CcCCHHHHHHHHHHHHHh
Confidence 2100 0000133456788888888753 3321 457999984 566788999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=160.77 Aligned_cols=302 Identities=14% Similarity=0.147 Sum_probs=183.0
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH----Hc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ----IA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~----~~ 192 (486)
++.+.++++.|.+ ..+++++|++|+..++.+... +++.|+++...|......+. ..
T Consensus 62 ~Le~~lA~l~g~~---------~~l~~ssG~~Ai~~al~al~~-----------~Gd~Vl~~~~~Y~~t~~~~~~~l~~~ 121 (425)
T PRK06084 62 VLEQRVAALEGGV---------GALAVASGMAAITYAIQTIAE-----------AGDNIVSVAKLYGGTYNLLAHTLPRI 121 (425)
T ss_pred HHHHHHHHHhCCC---------ceeEehhHHHHHHHHHHHHhC-----------CCCEEEEeCCCcchHHHHHHHhcccc
Confidence 3445678887753 357889999888777766543 55667777666654333332 23
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|+ ++..++ ..|+++|++++++++ .+|+++.++|++|.+-|+++|.++|+++|+++++|++|+.+
T Consensus 122 gi---~v~~~d-------~~d~e~le~ai~~~t------klV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~ 185 (425)
T PRK06084 122 GI---ETRFAA-------HDDIAALEALIDERT------KAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185 (425)
T ss_pred ee---EEEEEC-------CCCHHHHHHHhccCC------cEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 44 555554 248999999997643 37888999999999999999999999999999999999865
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEee-CchHHHHH------h-cCCcccccCccCCCCCccCC--
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVK-NPNALIKA------L-STNPEFLRNKASDSKQVVDY-- 341 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~-~~~~~~~~------~-~~~~~y~~~~~~~~~~~~~~-- 341 (486)
....+ .. .++|.++.++||+++++.. .|.+++. ........ + ...+.|..-......+....
T Consensus 186 ~~~~p-~~------~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 258 (425)
T PRK06084 186 VLCRP-FE------HGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIG 258 (425)
T ss_pred ccCCh-hh------cCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHH
Confidence 43222 11 2799999999999987643 3444443 22111110 0 01111110000000000000
Q ss_pred ---CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC---------------C--C
Q 038818 342 ---KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP---------------R--N 400 (486)
Q Consensus 342 ---~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~---------------~--~ 400 (486)
.......+.......+|+.++ |.+.+..++++..+++..+.+.|+++|.++-+ .| + .
T Consensus 259 ~~~~~~~~~~g~~l~~~~a~l~lr--gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~ 336 (425)
T PRK06084 259 RCRVVPLRNMGAALSPFNAFLILQ--GLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKP 336 (425)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCc
Confidence 000111233345566676665 66889999999999999999999999987543 22 1 2
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--cCc-------EEEeee-----eE-------CC--EeEEEEE
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA--SGQ-------LYVSHG-----MV-------AG--IYFIRFA 457 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~-------~~~~~~-----~~-------~~--~~~lR~~ 457 (486)
.++++|.+.+. .+...++.+.|.- .+. ++..+. .. .| .+.+|+|
T Consensus 337 gg~~s~~~~~~-------------~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~s 403 (425)
T PRK06084 337 ASILSFGIKGG-------------QAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLS 403 (425)
T ss_pred ceEEEEEecCC-------------HHHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEE
Confidence 45888888642 1223455554421 111 011111 00 12 4689999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 458 VGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++- ||.|.+++.|.++++.
T Consensus 404 vGl-----Ed~~dLi~dl~~Al~~ 422 (425)
T PRK06084 404 IGI-----EHIDDIIADLAQALDA 422 (425)
T ss_pred ecc-----CCHHHHHHHHHHHHHh
Confidence 953 3778888888877654
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=159.67 Aligned_cols=220 Identities=19% Similarity=0.180 Sum_probs=153.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH---
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--- 184 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--- 184 (486)
+|....+| +.++++.|.+. .+++++|+.|+..++..... +++.|+++...|..
T Consensus 64 ~p~~~~le----~~lA~l~g~~~---------~i~~~sG~~Al~~~l~~ll~-----------~Gd~Viv~~~~y~~t~~ 119 (403)
T PRK07503 64 NPTLALLE----QRMASLEGGEA---------AVALASGMGAITATLWTLLR-----------PGDEVIVDQTLYGCTFA 119 (403)
T ss_pred CchHHHHH----HHHHHHhCCCc---------EEEEcCHHHHHHHHHHHHcC-----------CCCEEEEccCccchHHH
Confidence 44444554 56888888753 47788888887766654322 56677788776644
Q ss_pred -HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 185 -LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 185 -~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
....+...|+ +++.++.+ |+++|++++++.+ .+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 120 ~~~~~~~~~G~---~v~~vd~~-------d~~~l~~~i~~~t------klV~le~p~NPtG~~~di~~I~~la~~~gi~l 183 (403)
T PRK07503 120 FLHHGLGEFGV---TVRHVDLT-------DPAALKAAISDKT------RMVYFETPANPNMRLVDIAAVAEIAHGAGAKV 183 (403)
T ss_pred HHHHHHhhCCE---EEEEeCCC-------CHHHHHHhcCccC------cEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEE
Confidence 3345566788 88877653 7899999887643 37888899999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
++|++|+.+....+ .. .++|.++.+++|+++++.+ +|+++ .+++...+..... ...
T Consensus 184 IvD~a~a~~~~~~~-l~------~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~l~~~~---~~~----------- 241 (403)
T PRK07503 184 VVDNTYCTPYLQRP-LE------LGADLVVHSATKYLGGHGDITAGLVV-GGKALADRIRLEG---LKD----------- 241 (403)
T ss_pred EEECCCcccccCCc-hh------hCCCEEEccccccccCCCceeEEEEE-cCHHHHHHHHhhh---HHh-----------
Confidence 99999976533211 11 2789999999999997753 56655 5554433221100 000
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
..+-....+.+|..++ +.+.+..++++..+++..+.+.|+++|.++.+
T Consensus 242 -----~~g~~~s~~~a~l~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V 289 (403)
T PRK07503 242 -----MTGAVMSPFDAFLLMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELV 289 (403)
T ss_pred -----CcCCCCCHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 0112334556666665 45778888889999999999999999887644
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=157.61 Aligned_cols=340 Identities=12% Similarity=0.050 Sum_probs=213.8
Q ss_pred CcceecCCCCCH-HHHHHHHHHhhcCCCcc------ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch
Q 038818 75 YYFAYFPSSGSI-AGFLGEMLSSGFNVVGF------NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC 147 (486)
Q Consensus 75 ~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~------~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt 147 (486)
+-+.|.|+|... +.++..+....+|-... ....++.+.++-+++.+.|.++++.|+++ ...++++|||
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y-----~v~~l~Gsgt 81 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY-----EVLFLQGGAS 81 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEeCccH
Confidence 445677877654 45555555555442211 11246778899999999999999997654 2456678888
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCC-CcccCHHHHHHHHHHH
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSS-SFTLTPESLQAAIDLD 224 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~-~~~~d~~~L~~~l~~~ 224 (486)
.++-.++...... .+.+.++. ...++ +.+.|+.+|. ..+.......+ ....++++++. +
T Consensus 82 ~~~ea~~~nl~~~----------~~~~l~~~-~G~fg~r~~~~a~~~g~---~~~~~~~~~~~~~~~~~~~~~~~----~ 143 (365)
T PLN02452 82 TQFAAIPLNLCKP----------GDKADFVV-TGSWSKKAAKEAKKYCK---TNVIASGKDEKYTKIPSVSEWEL----T 143 (365)
T ss_pred HHHHHHHHhcCCC----------CCeEEEEE-CCHHHHHHHHHHHHhCC---CcEEEecCCCCCCCCCChHHcCC----C
Confidence 7765554443321 23334433 56766 6667777776 33333221111 11456666521 1
Q ss_pred HHCCCccEEEEeecCCccccc-cCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC
Q 038818 225 IQAGLIPLFLCATVGTTAITT-VDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT 303 (486)
Q Consensus 225 ~~~g~~p~~vv~~~gtt~~G~-idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p 303 (486)
..+.+|.++++.|.+|. +.|++++.+ +.++||++...+....+- +..+.+..++||+++ |
T Consensus 144 ----~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv--------~~~~v~~~saqK~lG-P 204 (365)
T PLN02452 144 ----PDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDV--------SKYGVIYAGAQKNVG-P 204 (365)
T ss_pred ----CCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCH--------HHcCEEEEecccccC-C
Confidence 12458999999999999 599988863 899999998776654432 123334469999985 9
Q ss_pred CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHH
Q 038818 304 LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQ 381 (486)
Q Consensus 304 ~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~ 381 (486)
.|.|++++|++.+- +.-...+.|+..... ....+...+-. +...++..+++.+-.+ |++.+.++..++++
T Consensus 205 ~Gl~~v~vr~~~l~-~~~~~~~~~~~~~~~-------~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~ 276 (365)
T PLN02452 205 SGVTIVIIRKDLIG-NARPITPGMLDYKIH-------AENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKAD 276 (365)
T ss_pred CCeEEEEEcHHHHh-hcccCCCchhhHHHH-------HhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999877542 222222333211100 00000001111 1234555667766555 89999999999999
Q ss_pred HHHHHHhCCCCeEEe-cCC---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEE
Q 038818 382 LFQELVGGDNRFEIV-APR---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFA 457 (486)
Q Consensus 382 ~l~~~L~~~~~~~~~-~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~ 457 (486)
++++.|++.++|... .++ ...+++|++... +..+++.+.+.++|.+.+.+...-| .+|++
T Consensus 277 ~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~--------------~~~~~f~~~~~~~g~~~~~G~r~~g--g~R~s 340 (365)
T PLN02452 277 LLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS--------------ELEAEFVKEAAKAGMVQLKGHRSVG--GMRAS 340 (365)
T ss_pred HHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc--------------hhHHHHHHHHHHCCCcccCCccccC--ceEEE
Confidence 999999998777221 111 234788887642 2567888889899986655543333 39999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 458 VGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+.| ..+.++|++|++.+++..++
T Consensus 341 ~yn-a~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 341 IYN-AMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred CcC-CCCHHHHHHHHHHHHHHHHh
Confidence 975 67778999999999987654
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=159.12 Aligned_cols=227 Identities=16% Similarity=0.203 Sum_probs=157.4
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHH
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQI 191 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~ 191 (486)
.++.+.+++++|.+ .++++++|++|+..++.+... +++.|+++...|.+ +...+..
T Consensus 57 ~~le~~la~l~g~~---------~~~~~~sG~~Ai~~al~al~~-----------~Gd~Vl~~~~~~~~t~~~~~~~~~~ 116 (380)
T TIGR01325 57 AAFEERIAALEGAE---------RAVATATGMSAIQAALMTLLQ-----------AGDHVVASRSLFGSTVGFISEILPR 116 (380)
T ss_pred HHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEecCCcchHHHHHHHHHHH
Confidence 33445678888874 358899999999887765432 45567777666644 3445677
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|+ +++.++.+ |++++++++++. +.+|+++.++|++|.+.|+++|+++|+++|++++||++|+.
T Consensus 117 ~g~---~v~~v~~~-------d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~ 180 (380)
T TIGR01325 117 FGI---EVSFVDPT-------DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFAT 180 (380)
T ss_pred hCC---EEEEECCC-------CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence 788 88888753 788898887653 34788899999999999999999999999999999999975
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCC-cc-eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DC-CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~-g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+....+ .. .++|.++.+++|+++++. .. |+++. +++....... +.. ..+
T Consensus 181 ~~~~~p-l~------~g~Divv~S~sK~l~g~g~~~gG~vv~-~~~~~~~l~~----~~~-----------------~~g 231 (380)
T TIGR01325 181 PVLQQP-LK------LGADVVVYSATKHIDGQGRVMGGVIAG-SEELMAEVAV----YLR-----------------HTG 231 (380)
T ss_pred cccCCc-hh------hCCCEEEeeccceecCCCCeEEEEEEe-CHHHHHHHHH----HHH-----------------hhC
Confidence 433221 11 168999999999999764 33 54444 4433322111 110 011
Q ss_pred CCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C-----C-----------CeeEEEEEee
Q 038818 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P-----R-----------NFAVVCFRVL 409 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~-----~-----------~~~~v~f~~~ 409 (486)
.......+|..++ +.+.+..++++..+++.++.+.|+++|.++-+. | | ..++++|.+.
T Consensus 232 ~~~~p~~a~~~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 232 PAMSPFNAWVLLK--GLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred CCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 1223344565554 567778889999999999999999998876432 2 1 2468888886
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-16 Score=156.81 Aligned_cols=291 Identities=18% Similarity=0.130 Sum_probs=182.1
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++.+++++++|.+.. ...++++||++|+..|+..++.. | ++.+|......|.+...+....|..
T Consensus 88 ~~la~~l~~~~~~~~~------~~v~~~~sgsea~~~al~~~~~~--------g-~~~ii~~~~~yhg~~~~~~~~~~~~ 152 (398)
T PRK03244 88 IALAERLVELLGAPEG------GRVFFCNSGAEANEAAFKLARLT--------G-RTKIVAAEGGFHGRTMGALALTGQP 152 (398)
T ss_pred HHHHHHHHHhCCCCCC------CEEEEeCchHHHHHHHHHHHHHH--------C-CCeEEEECCCcCCccHHHHhccCCc
Confidence 4667888888885421 26899999999999999988763 1 2345555555565555554444421
Q ss_pred C---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCce
Q 038818 196 P---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIW 262 (486)
Q Consensus 196 ~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~ 262 (486)
. .++..+|. .|+++|++++.+ .+.+|+++...+++|.+-| +++|.++|++||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 219 (398)
T PRK03244 153 AKRAPFEPLPGGVEHVPY-------GDVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGAL 219 (398)
T ss_pred ccccCCCCCCCCceEeCC-------CCHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 0 02333332 378999988742 2457778888999999977 89999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
+++|++|.++......+.....++ ..|.+++ .|+++..++.|.++.+++ . .+.+.. ....
T Consensus 220 lI~DEv~~g~gr~g~~~~~~~~~~-~pDi~t~--sK~l~~G~~ig~~~~~~~-~-~~~~~~---~~~~------------ 279 (398)
T PRK03244 220 LVLDEVQTGIGRTGAWFAHQHDGV-TPDVVTL--AKGLGGGLPIGACLAFGP-A-ADLLTP---GLHG------------ 279 (398)
T ss_pred EEEeccccCCcccchHHhhhhhCC-CCCEEEE--chhhhCCcccEEEEEcHH-H-HhhccC---CCCc------------
Confidence 999999976422111011011222 4676655 699997788999988765 2 222211 0000
Q ss_pred CccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec--CCCeeEEEEEeecCCCCCCC
Q 038818 343 DWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA--PRNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~v~f~~~~~~~~~~~ 417 (486)
.+. ....+.+.+ ++..+..+ +..++..++.++|++.|+++ ++.++. .....++.+.+...
T Consensus 280 -~t~----~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~~------ 344 (398)
T PRK03244 280 -STF----GGNPVACAAALAVLDTIASE---GLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAP------ 344 (398)
T ss_pred -CCC----CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEecc------
Confidence 011 112233333 33333322 45677778889999999875 222111 12345556665321
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
...++.+++.++|+++ .+. +..++|+++. ...+++||+++++.|+++++++.
T Consensus 345 ---------~~~~~~~~l~~~Gv~~-~~~---~~~~iR~~p~-~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 345 ---------VAKAVEAAAREAGFLV-NAV---APDVIRLAPP-LIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred ---------HHHHHHHHHHHCCeEE-eec---CCCEEEEECC-CcCCHHHHHHHHHHHHHHHHhcc
Confidence 2456778888889753 332 3467999983 45678899999999999987653
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=162.19 Aligned_cols=337 Identities=14% Similarity=0.049 Sum_probs=209.6
Q ss_pred HHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 86 IAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+|.+..+.+...+ ......+|.+.++-+++.+.|.++++.+.++ ...++++|||.++-.++......
T Consensus 15 ~~~~~~~~~~~~~---~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~-----~v~~l~GsGT~a~Eaa~~nl~~~----- 81 (374)
T TIGR01365 15 RPGWSIEELKNAP---LGRSHRSKLGKEKLAEAIKKTREMLGVPADY-----LIGIVPASDTGAVEMALWSMLGC----- 81 (374)
T ss_pred CchhhHHHHhhhh---cccCcCCHHHHHHHHHHHHHHHHHhCCCCCc-----EEEEECCchHHHHHHHHHHcCCC-----
Confidence 4555555554332 2222457889999999999999999986542 13567999998776665554321
Q ss_pred cccCCCCeEEEecCCCchH--HH-HHHHHcCCCCCC-eEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCc
Q 038818 166 GRENISRLVVYGSDQTHSA--LQ-KAAQIAGIDPKN-FRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTT 241 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s--~~-~a~~~~G~g~~~-v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt 241 (486)
++..+++. ..++ +. +.|+.+|+ . +..+..+... .+|+++++. + + .|+++++.|
T Consensus 82 -----~g~~vLv~--g~FG~r~~~eia~~~g~---~~v~~l~~~~g~--~~~~~~ve~--~----~-----~v~~vhnET 138 (374)
T TIGR01365 82 -----RGVDVLAW--ESFGKGWVTDVTKQLKL---PDVRVLEAEYGK--LPDLKKVDF--K----N-----DVVFTWNGT 138 (374)
T ss_pred -----CCCeEEEE--CHHHHHHHHHHHHhcCC---CCcEEEcCCCCC--CCCHHHcCC--C----C-----CEEEecCCC
Confidence 34334444 2444 34 78888998 4 6666665433 789999973 1 1 267999999
Q ss_pred cccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHh
Q 038818 242 AITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 242 ~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~ 321 (486)
.||...|+++|+..+ ++..++||+.-+.+....+ ++++|.+..+++|++++|+|.|+++++++.+.+ .-
T Consensus 139 STGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~--------~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~-~~ 207 (374)
T TIGR01365 139 TSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLD--------YHKLDVVTFSWQKVLGGEGAHGMLILSPRAVAR-LE 207 (374)
T ss_pred chheecccccccccc--CCCcEEEEccchhcCCCCC--------hhHCcEEEEechhccCCCCceEEEEECHHHHHH-Hh
Confidence 999999998766433 5899999998765544332 125999999999999999999999999886632 21
Q ss_pred cCCc-----ccccCccCCCCCccCCCCccccCCCCC--CchHHHHHHHH---hchH-HHHHHHHHHHHHHHHHHHHHhCC
Q 038818 322 STNP-----EFLRNKASDSKQVVDYKDWQITLSRRF--RALKLWLVLRS---FGVA-NLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 322 ~~~~-----~y~~~~~~~~~~~~~~~~~~~~~sr~~--~~l~~~~~l~~---~g~~-g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
...+ .|+..... . .+.........++ ....+++.+.. +-.+ |++++.+++.++++.+++.++++
T Consensus 208 ~~~~y~~~~~~~~~~~~---~--~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~l 282 (374)
T TIGR01365 208 SYTPAWPLPKIFRLTKG---G--KLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKN 282 (374)
T ss_pred hcCCCCCChhhhccccc---c--chhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 1111 12111000 0 0000000000111 12344444333 3344 89999999999999999999998
Q ss_pred CCeEEecC-C--Cee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEee-eeECCEeEEEEEecCCCCcH
Q 038818 391 NRFEIVAP-R--NFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSH-GMVAGIYFIRFAVGATLTED 465 (486)
Q Consensus 391 ~~~~~~~~-~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~lR~~~~~~~tt~ 465 (486)
+.++++.. + .++ ++++.+.++.....+ +.....+..++.+.+.++|+.+-.+ .... ...+|+..+. ..+.
T Consensus 283 g~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~-~~~fRIg~~G-~i~~ 357 (374)
T TIGR01365 283 NWIHFLAETPEIRSNTSVCLKVVDPAIDALD---EDAQADFAKELISTLEKEGVAYDIGSYRDA-PSGLRIWCGA-TVEK 357 (374)
T ss_pred CCcccCCCChhhcCCCeEEEEeCCccccccc---cchhhHHHHHHHHHHHHCCEEEeccccccC-CCceEEecCC-cCCH
Confidence 43777653 1 233 455666332100000 0001223456787887888743222 2223 3679999985 6778
Q ss_pred HHHHHHHHHHHHHH
Q 038818 466 RHVIAAWKVVQEKL 479 (486)
Q Consensus 466 ~did~~i~~l~~~~ 479 (486)
+||+.+++.|+=+-
T Consensus 358 ~di~~l~~~l~~~~ 371 (374)
T TIGR01365 358 SDLECLCPWLDWAF 371 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999987543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=158.70 Aligned_cols=313 Identities=12% Similarity=0.106 Sum_probs=185.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
++...++| +++++.+|.+ ..++|+|||+|+..++.+..-. +++.|+++..+|.+...
T Consensus 30 g~~~~~~e----~~la~~~g~~---------~~v~~~sgt~aL~~~l~al~~~----------pGd~Viv~~~t~~~~~~ 86 (376)
T TIGR02379 30 GPFSRRCE----TWLENRTGTK---------KALLTPSCTAALEMAALLLDIQ----------PGDEVIMPSYTFVSTAN 86 (376)
T ss_pred cHHHHHHH----HHHHHHhCCC---------eEEEeCCHHHHHHHHHHHcCCC----------CcCEEEECCCCcHHHHH
Confidence 44444444 5677777763 5789999999987666543111 67789999999999999
Q ss_pred HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 188 AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 188 a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
++...|+ +++.++++++ ++.+|+++|++++++.+ .+|+. ++++|...|+++|.++|++||+++++|+
T Consensus 87 ~~~~~G~---~~v~vd~d~~-~~~~d~~~le~~i~~~t------k~Iip---~~~~G~~~d~~~I~~la~~~~i~vIeDa 153 (376)
T TIGR02379 87 AFVLRGA---KIVFVDIRPD-TMNIDETLIESAITHRT------KAIVP---VHYAGVACDMDTIMALANKHQLFVIEDA 153 (376)
T ss_pred HHHHcCC---EEEEEecCCC-cCCCCHHHHHHhcCcCc------eEEEE---eCCCCCccCHHHHHHHHHHCCCEEEEEC
Confidence 9999999 9999999863 47899999999987543 35554 4568999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc-c
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ-I 346 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~ 346 (486)
||+.+..... +. +..+..+.++++.+.|.+......|++++++++...+...... +=........... ..+. .
T Consensus 154 a~~~g~~~~~--~~-~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~--~~~~~~ 227 (376)
T TIGR02379 154 AQGVMSTYKG--RA-LGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIRE-KGTNRSQFFRGEV--DKYTWR 227 (376)
T ss_pred ccccCCccCC--cc-cCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHH-hCCCCccccccCC--Ccceee
Confidence 9976542211 11 1111123344444445555433467888887765543321110 0000000000000 0000 0
Q ss_pred cCCCC--CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC--C-eEEec-CCC----eeEEEEEeecCCCCCC
Q 038818 347 TLSRR--FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN--R-FEIVA-PRN----FAVVCFRVLPSASGLG 416 (486)
Q Consensus 347 ~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~--~-~~~~~-~~~----~~~v~f~~~~~~~~~~ 416 (486)
..+.+ ...+.+...+.. .+.+.+..++..+++++..+.|+.++ + .++.. ++. ...+.+.+...
T Consensus 228 ~~g~n~~~~~~~Aa~g~~q--L~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----- 300 (376)
T TIGR02379 228 DIGSSYLPSELQAAYLWAQ--LEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE----- 300 (376)
T ss_pred eecccCCccHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc-----
Confidence 11222 222332222222 36778888899999999999998764 2 23221 111 12333333221
Q ss_pred CCCCccchHHHHHHHHHHHHhcCcEEEeee-eEC---------------------CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 417 DGKANEGANELNRKLLESINASGQLYVSHG-MVA---------------------GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~---------------------~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
. ...++.+.|.++|+..-... ... ....+.+- +++..+++|+++++++
T Consensus 301 -----~----~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP-~~~~l~~~~~~~i~~~ 370 (376)
T TIGR02379 301 -----D----DRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLP-LYYGLSKEDQARVIQT 370 (376)
T ss_pred -----C----CHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEcc-CCCCCCHHHHHHHHHH
Confidence 0 12356677777786311000 000 01234443 4788999999999999
Q ss_pred HHHHH
Q 038818 475 VQEKL 479 (486)
Q Consensus 475 l~~~~ 479 (486)
|+++.
T Consensus 371 i~~~~ 375 (376)
T TIGR02379 371 ICDYL 375 (376)
T ss_pred HHHHh
Confidence 98763
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=160.88 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=161.1
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.+|...++|+. ++++.|.+ .+++++||++|+..++. +.. +++.|+++...+....
T Consensus 52 ~~p~~~~le~~----lA~leg~~---------~~v~~~sG~aAi~~~l~-~l~-----------~GD~VI~~~~~yg~~~ 106 (364)
T PRK07269 52 KNPTRAKLEET----LAAIESAD---------YALATSSGMSAIVLAFS-VFP-----------VGSKVVAVRDLYGGSF 106 (364)
T ss_pred CCccHHHHHHH----HHHHhCCC---------eEEEeCCHHHHHHHHHH-HhC-----------CCCEEEEecCCcCchH
Confidence 45556666665 56666643 57899999999877663 322 5566767765553322
Q ss_pred HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
..+....- .. .+.+ .+.+|+++++++|++++ .+|+++.++|++|.+.|+++|+++|+++|+++++|
T Consensus 107 ~~~~~~~~---~~-~~~~----~~~~d~~~l~~~i~~~T------klV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD 172 (364)
T PRK07269 107 RWFNQQEK---EG-RFHF----TYANTEEELIAAIEEDT------DIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVD 172 (364)
T ss_pred HHHHHHHh---cC-cEEE----EecCCHHHHHHhcCcCc------eEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEE
Confidence 22211100 00 1111 23468999999997654 37999999999999999999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
++|+......| .. .++|.++.|+||+++++.. .|++++++++...+..... .+
T Consensus 173 ~t~~~~~~~~p-l~------~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~~----------------- 227 (364)
T PRK07269 173 NTFYSPIYQRP-IE------LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-NT----------------- 227 (364)
T ss_pred CCCcccccCCc-hh------hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH-HH-----------------
Confidence 99866543222 11 2799999999999998765 6777777765543322100 00
Q ss_pred cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecCCCeeEEEEEee
Q 038818 345 QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAPRNFAVVCFRVL 409 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~~~~~v~f~~~ 409 (486)
.+.....+.+|..++ |.+.+..++++..+++..+.+.|+++|.++ +..|+..++++|.+.
T Consensus 228 ---~G~~~s~~~a~l~~~--~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 228 ---TGAVLSPFDSYLLMR--GLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred ---hCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEEC
Confidence 111235566676666 446789999999999999999999999864 555777889999885
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-16 Score=157.96 Aligned_cols=328 Identities=10% Similarity=0.028 Sum_probs=191.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.++...++|++ +++++|.+ ..++++|||+|++.++.+....+..+.+. .+++.|+++..+|.+..
T Consensus 61 ~G~~~~~fe~~----lA~~~g~~---------~~v~~~sGt~al~~aL~al~~~~~~~~~~--~pGd~VIv~~~t~~a~~ 125 (438)
T PRK15407 61 TGRFNDAFEKK----LAEFLGVR---------YALLVNSGSSANLLAFSALTSPKLGDRAL--KPGDEVITVAAGFPTTV 125 (438)
T ss_pred CChhHHHHHHH----HHHHhCCC---------eEEEECCHHHHHHHHHHHHhhccccccCC--CCCCEEEECCCCcHHHH
Confidence 35555566654 66667754 46889999999998887664321111010 15778999999999999
Q ss_pred HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
.++...|+ .++.++++. .++.+|++++++++.+.+ .+|++++ +.|...++++|.++|+++|+++++|
T Consensus 126 ~~v~~~G~---~pv~vdvd~-~~~~id~~~le~~i~~~t------kaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeD 192 (438)
T PRK15407 126 NPIIQNGL---VPVFVDVEL-PTYNIDASLLEAAVSPKT------KAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIED 192 (438)
T ss_pred HHHHHcCC---EEEEEecCC-CcCCcCHHHHHHHcCcCC------eEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEE
Confidence 99999999 999999875 367999999999987543 3566665 3677789999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC-------------c-c
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN-------------K-A 332 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~-------------~-~ 332 (486)
+|++.+......... .+..+-.+++.+.|.+.+.. .|+++++++.......... .+=.. . .
T Consensus 193 aa~a~G~~~~g~~~G---~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~ 267 (438)
T PRK15407 193 NCDALGSTYDGRMTG---TFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIESFR-DWGRDCWCAPGCDNTCGKRFG 267 (438)
T ss_pred CccchhhhcCCeeee---ccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHHHH-HhCcccccccccccccccccc
Confidence 999776544322111 11122234444556666543 4888888876643222110 00000 0 0
Q ss_pred CCCC---CccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEecC-CCe----eE
Q 038818 333 SDSK---QVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR-FEIVAP-RNF----AV 403 (486)
Q Consensus 333 ~~~~---~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~~~-~~~----~~ 403 (486)
...+ ...+........|-.+..-.+.+++.....+.+++++++..++++++.+.|+.+++ +.+... +.. ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T PRK15407 268 WQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFG 347 (438)
T ss_pred cccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEE
Confidence 0000 00000000001122222222333333333477889999999999999999998875 333221 121 12
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEE---Ee-eee----ECC----------------EeEEEEEec
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLY---VS-HGM----VAG----------------IYFIRFAVG 459 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~-~~~----~~~----------------~~~lR~~~~ 459 (486)
+.+.+.+.. .....++.+.|.++|+-. .. +.. +.+ ...+-+= +
T Consensus 348 ~~i~~~~~~------------~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP-~ 414 (438)
T PRK15407 348 FPITVKEDA------------GFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIG-V 414 (438)
T ss_pred EEEEECCcC------------CCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEec-C
Confidence 333333210 011235666777777621 11 100 000 1112222 3
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~ 480 (486)
++..+++|+++++++|+++.+
T Consensus 415 ~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 415 YPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 667789999999999998764
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-17 Score=160.26 Aligned_cols=285 Identities=18% Similarity=0.203 Sum_probs=183.8
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH-
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL- 185 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~- 185 (486)
..|....+| +.++++.|.+. .+++++|+.|+..++ .+.. +++.|+++...|.+.
T Consensus 48 ~~p~~~~Le----~~la~l~g~~~---------al~~~SG~~Al~~~l-~~l~-----------pGd~Vi~~~~~y~~t~ 102 (380)
T PRK06176 48 GNPTRFALE----ELIADLEGGVK---------GFAFASGLAGIHAVF-SLFQ-----------SGDHVLLGDDVYGGTF 102 (380)
T ss_pred CChhHHHHH----HHHHHHhCCCC---------EEEECCHHHHHHHHH-HHcC-----------CCCEEEEcCCChhHHH
Confidence 344444555 55788888653 477788887765333 2221 567788887777543
Q ss_pred ---HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 186 ---QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 186 ---~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
...+...|+ +++.++. .|++++++++++++ .+|+++.++|++|.+.|+++|+++|+++|++
T Consensus 103 ~~~~~~~~~~gi---~v~~vd~-------~d~e~l~~ai~~~t------~lV~lesP~Nptg~~~di~~I~~la~~~gi~ 166 (380)
T PRK06176 103 RLFDKVLVKNGL---SCTIIDT-------SDLSQIKKAIKPNT------KALYLETPSNPLLKITDLAQCASVAKDHGLL 166 (380)
T ss_pred HHHHHHHHhcCe---EEEEcCC-------CCHHHHHHhcCcCc------eEEEEECCCCCCceecCHHHHHHHHHHcCCE
Confidence 344566677 7777653 38999999887643 4788899999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||++|+.+....| . . .++|.++.++||++++|.. .|++..+++....+... +..
T Consensus 167 vivD~t~a~~~~~~p-~-----~-~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~-----~~~---------- 224 (380)
T PRK06176 167 TIVDNTFATPYYQNP-L-----L-LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAF-----FQN---------- 224 (380)
T ss_pred EEEECCccccccCCc-c-----c-cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHH-----HHH----------
Confidence 999999976433222 1 1 2799999999999998763 66666666544322210 000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~ 403 (486)
..+....+...|..++ |.+.+..++++..+++..+.+.|+++|.++-+..| ..++
T Consensus 225 ------~~G~~~~~~~~~l~~~--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~ 296 (380)
T PRK06176 225 ------AIGGVLGPQDSWLLQR--GIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGM 296 (380)
T ss_pred ------HhcCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceE
Confidence 0111123344565554 56777888899999999999999999887644221 1457
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--cCc-------EEEeeee-----E-------CC--EeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINA--SGQ-------LYVSHGM-----V-------AG--IYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~-------~~~~~~~-----~-------~~--~~~lR~~~~~ 460 (486)
++|.+.. .+...++.+.|.- .+. ++..+.. . .| .+.+|+|++-
T Consensus 297 ~s~~~~~--------------~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl 362 (380)
T PRK06176 297 LSFTLKN--------------DSEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI 362 (380)
T ss_pred EEEEECC--------------HHHHHHHHHcCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc
Confidence 8888753 1223455554421 111 1111110 0 12 4689999952
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~ 481 (486)
||+|.+++.|+++++.
T Consensus 363 -----E~~~dli~dl~~Al~~ 378 (380)
T PRK06176 363 -----EHEQDLLEDLEQAFAK 378 (380)
T ss_pred -----CCHHHHHHHHHHHHhh
Confidence 3678888888877764
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=149.15 Aligned_cols=313 Identities=12% Similarity=0.087 Sum_probs=206.3
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC---
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ--- 180 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~--- 180 (486)
.|.......++|..+++...+|||++.. -+=..||+.||+.++.+... |++.|+.-+.
T Consensus 63 yYgGce~VD~vE~laierak~LFga~~a--------nVQPhSGs~AN~av~~All~-----------pGDtimgm~l~~G 123 (413)
T COG0112 63 YYGGCEYVDEVEELAIERAKKLFGAEYA--------NVQPHSGSQANQAVYLALLQ-----------PGDTIMGLDLSHG 123 (413)
T ss_pred ccCCCeeHHHHHHHHHHHHHHHhCCCcc--------ccCCCCchHHHHHHHHHHcC-----------CCCeEecccCCCC
Confidence 4556667889999999999999999754 24456789999877666554 5666654333
Q ss_pred CchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC
Q 038818 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS 260 (486)
Q Consensus 181 ~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g 260 (486)
.|-+...-....|.- -+++..++|+ +++.+|.|++++...+.+ |.+|++ |.+..-..-|++++++||++.|
T Consensus 124 GHltHg~~v~~sG~~-~~~v~Y~vd~-et~~IDyD~~~k~a~e~k-----PK~ii~--G~SaY~r~id~~~~reIad~VG 194 (413)
T COG0112 124 GHLTHGSPVNFSGKL-FNVVSYGVDP-ETGLIDYDEVEKLAKEVK-----PKLIIA--GGSAYSRPIDFKRFREIADEVG 194 (413)
T ss_pred CcccCCCCCCcccee-EEeEeccccc-ccCccCHHHHHHHHHHhC-----CCEEEE--CccccccccCHHHHHHHHHHhC
Confidence 444433222333321 1666777875 368999999999988764 666544 4555667789999999999999
Q ss_pred ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhc-CCcccccCccCCCCCcc
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALS-TNPEFLRNKASDSKQVV 339 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~ 339 (486)
++|.+|.||-.+.+....+..- ++.||.+|.+.||+|.+|. .|++++++++...+.-+ ..|+..
T Consensus 195 A~L~~DmAHiaGLVA~G~~p~P---~~~AdvVTtTTHKTlrGPr-GG~Il~~~eel~kkin~aVFPg~q----------- 259 (413)
T COG0112 195 AYLMVDMAHVAGLIAGGVHPNP---LPHADVVTTTTHKTLRGPR-GGIILTNDEELAKKINSAVFPGLQ----------- 259 (413)
T ss_pred ceEEehHHHHHHHHhcccCCCC---CCccceEeCCcccCCCCCC-ceEEEeccHHHHHHhhhhcCCccC-----------
Confidence 9999999997666554443332 4579999999999999997 57888887655443221 222221
Q ss_pred CCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCC
Q 038818 340 DYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 340 ~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~ 417 (486)
++-.. ...+...+++.....++++..++..++|+.|.+.|.+. |++++.. .+.+++...+.+....
T Consensus 260 --------ggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~~--- 327 (413)
T COG0112 260 --------GGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGLT--- 327 (413)
T ss_pred --------CChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCCC---
Confidence 11111 12344556666667889999999999999999999986 8999863 3456666666532110
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeee------ECCEeEEEEEe---cCCCCcHHHHHHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGM------VAGIYFIRFAV---GATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------~~~~~~lR~~~---~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+.... .|.+.|+.+-.-+. ......||+.. +.....++|++++.+.|.+++..
T Consensus 328 -------Gk~ae~---~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 328 -------GKKAEA---ALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred -------HHHHHH---HHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 222222 33344553221111 11245689876 23344667888888888877653
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=158.49 Aligned_cols=310 Identities=12% Similarity=0.085 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
.+++.+++++.+|.+ ..++++|||.|+..++.++.-. +++.|+++..+|.+...++...|+
T Consensus 33 ~~~~e~~la~~~g~~---------~~v~~~sgt~al~~~l~~~~~~----------~Gd~Viv~~~t~~~~~~~~~~~G~ 93 (375)
T PRK11706 33 TRRCQQWLEQRFGSA---------KVLLTPSCTAALEMAALLLDIQ----------PGDEVIMPSYTFVSTANAFVLRGA 93 (375)
T ss_pred HHHHHHHHHHHhCCC---------eEEEECCHHHHHHHHHHHhCCC----------CCCEEEECCCCcHHHHHHHHHcCC
Confidence 344556678888764 4789999999976665543111 677899999999999999999999
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhc
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~ 274 (486)
+++.++++++ ++.+|+++|++++++.+ .+|+.+ +++|...++++|.++|+++|+++++|+||+.+..
T Consensus 94 ---~~v~~d~d~~-~~~~d~~~le~~i~~~t------k~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~ 160 (375)
T PRK11706 94 ---KIVFVDIRPD-TMNIDETLIEAAITPKT------RAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST 160 (375)
T ss_pred ---EEEEEecCCC-cCCcCHHHHHHhcCCCC------eEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccc
Confidence 9999999863 47899999999986533 355554 3589999999999999999999999999976542
Q ss_pred cCccchhhhcCCCCCCceeeccc--cccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAH--KWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF 352 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~h--K~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~ 352 (486)
... +. + + ...|.-++|+| |.+.++ ..|++++.+++...+.......-..... ..........+ ...+..+
T Consensus 161 ~~~--~~-~-g-~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~g~~~ 232 (375)
T PRK11706 161 YKG--RA-L-G-TIGHIGCFSFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQ-FFRGQVDKYTW-VDIGSSY 232 (375)
T ss_pred cCC--ee-e-e-cCcCEEEEeCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcch-hhccCCCccee-eeccccc
Confidence 211 11 1 1 12455566666 998653 3466666666544322111000000000 00000000000 0112222
Q ss_pred CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC---eEEecCC-C----eeEEEEEeecCCCCCCCCCCccch
Q 038818 353 RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR---FEIVAPR-N----FAVVCFRVLPSASGLGDGKANEGA 424 (486)
Q Consensus 353 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~-~----~~~v~f~~~~~~~~~~~~~~~~~~ 424 (486)
..-.+-+++.....+.+++..++..++++++.+.|..+++ +++...+ . ...+.+.+.+.
T Consensus 233 ~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 299 (375)
T PRK11706 233 LPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDL------------- 299 (375)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCc-------------
Confidence 2111222222122355788888899999999999988762 4432111 1 12333333221
Q ss_pred HHHHHHHHHHHHhcCcEEEe---eee-------E---C---------CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 425 NELNRKLLESINASGQLYVS---HGM-------V---A---------GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 425 ~~~~~~l~~~l~~~g~~~~~---~~~-------~---~---------~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
....++.+.|.++|+.... +.. + . ....+-+- +++..+++|++.+++.|+++.
T Consensus 300 -~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP-~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 300 -EDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLP-LFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred -CCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEecc-CCCCCCHHHHHHHHHHHHHHh
Confidence 1134667777777874110 100 0 0 01123333 467888999999999998763
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-16 Score=155.67 Aligned_cols=325 Identities=13% Similarity=0.091 Sum_probs=200.8
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
+..+.+.+...+. ....|....+..++.+.+.+|+.+.+|.+... +.....++|+|+++++..++.+..+
T Consensus 43 ~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~--~~~~~i~it~Ga~~al~~~~~~l~~------- 112 (393)
T TIGR03538 43 PAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGV--DPERHVLPVNGTREALFAFAQAVIN------- 112 (393)
T ss_pred CHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccC--CCCceEEECCCcHHHHHHHHHHHcC-------
Confidence 4456666665443 23456555556788899999999988765210 0001578899999988776665543
Q ss_pred ccCCCCe--EEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 167 RENISRL--VVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 167 ~~~~~~~--~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
++. .|+++..++..+...++..|+ +++.+|+++++.+.+|+++|++++.+.+ .+|+++.++||||
T Consensus 113 ----~gd~~~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~i~l~~p~NPtG 179 (393)
T TIGR03538 113 ----PGQAPLVVMPNPFYQIYEGAALLAGA---EPYFLNCTAENGFLPDFDAVPESVWRRC------QLLFVCSPGNPTG 179 (393)
T ss_pred ----CCCcceEEecCCCCcchHHHHHhcCC---eEEEeeccccCCCCCCHHHHHHHHhhcc------eEEEEeCCCCCcC
Confidence 333 478888888888888999999 9999999754457899999999886533 3677789999999
Q ss_pred ccCC---chHHHHHHHHhCceEEeeccccchhccCc-cchhhh---cCCC--CC--Cceeecccccc-CCCCcceEEEee
Q 038818 245 TVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICP-EFRHFI---DGIE--GA--DSFSLNAHKWF-FTTLDCCCLWVK 312 (486)
Q Consensus 245 ~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~-~~~~~~---~~~~--~a--Dsi~~~~hK~l-~~p~~~g~~~~~ 312 (486)
.+-+ +++|+++|++||+++++|.+|........ .....+ ..+. .. -.++.++.|.+ .....+|+++..
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~ 259 (393)
T TIGR03538 180 AVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD 259 (393)
T ss_pred cccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecC
Confidence 9866 78899999999999999999975432110 010101 0010 01 14567789954 455678887764
Q ss_pred CchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCC
Q 038818 313 NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDN 391 (486)
Q Consensus 313 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~ 391 (486)
+....+..... .+.. .....+..++++..+. .+.+++..+...+..+.+.+.|++.
T Consensus 260 -~~l~~~~~~~~-~~~~--------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~- 316 (393)
T TIGR03538 260 -AEILKAFLRYR-TYHG--------------------CAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV- 316 (393)
T ss_pred -HHHHHHHHHHH-Hhhc--------------------cCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 33332211100 0100 0112233333333332 3446666677777788888888764
Q ss_pred CeEEecCCCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--------CEeEEEEEecCC
Q 038818 392 RFEIVAPRNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--------GIYFIRFAVGAT 461 (486)
Q Consensus 392 ~~~~~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--------~~~~lR~~~~~~ 461 (486)
+.+. .|..+.+ .+.+. . + ..++.+.+. +.|+.+..+..+. +.+++|++++.
T Consensus 317 -~~~~-~p~gg~f~~~~~~-~-------------~--~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~- 377 (393)
T TIGR03538 317 -LDLE-LPDAGFYLWPKVP-G-------------D--DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA- 377 (393)
T ss_pred -Cccc-CCCeeEEEEEECC-C-------------C--HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-
Confidence 3333 3444443 44443 1 1 134555554 4677554443321 24689999853
Q ss_pred CCcHHHHHHHHHHHHHH
Q 038818 462 LTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~ 478 (486)
+++++++.++.|.+.
T Consensus 378 --~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 378 --PLEECVEAAERIRSF 392 (393)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 467888888888764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-16 Score=155.50 Aligned_cols=305 Identities=15% Similarity=0.109 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 85 SIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 85 ~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
.+|..+.+.+...++. ...|....... ++++++++.+|.+++ ++++|+|+++++..++. . .
T Consensus 35 ~~~~~~~~~~~~~~~~-~~~Y~~~~g~~----~lr~aia~~~~~~~~-------~I~it~Ga~~al~~~~~-l-~----- 95 (349)
T PRK07908 35 TPPEWLRERLAARLGD-LAAYPSTEDER----RARAAVAARHGRTPD-------EVLLLAGAAEGFALLAR-L-R----- 95 (349)
T ss_pred CCCHHHHHHHHHHhhH-hhcCCCccchH----HHHHHHHHHhCcChh-------hEEECCCHHHHHHHHHh-c-C-----
Confidence 3444455655554432 12343222323 355666777788765 78999999998865544 1 1
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
++.++ +...++......++..|+ +++.+|+++ ++.+|+++++ +. +.+++++.++|+||
T Consensus 96 ------~~~vi-v~~P~y~~~~~~~~~~G~---~i~~v~~~~--~~~~d~~~l~----~~------~~~i~l~np~NPTG 153 (349)
T PRK07908 96 ------PRRAA-VVHPSFTEPEAALRAAGI---PVHRVVLDP--PFRLDPAAVP----DD------ADLVVIGNPTNPTS 153 (349)
T ss_pred ------CCeEE-EeCCCChHHHHHHHHcCC---EEEeeccCc--ccCcChhHhc----cC------CCEEEEcCCCCCCC
Confidence 33333 455677777788889999 999999975 3789998653 21 23677889999999
Q ss_pred ccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceee-ccccccC-CCCcceEEEeeCchHHHHHhc
Q 038818 245 TVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSL-NAHKWFF-TTLDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 245 ~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~-~~hK~l~-~p~~~g~~~~~~~~~~~~~~~ 322 (486)
.+-|.++|.++|++ +.++++|++|+-.. .. .... +.....-+.+.+ +++|.++ ....+|+++.. +..+.....
T Consensus 154 ~~~~~~~l~~l~~~-~~~iIvDe~y~~~~-~~-~~~~-l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~-~~~~~~~~~ 228 (349)
T PRK07908 154 VLHPAEQLLALRRP-GRILVVDEAFADAV-PG-EPES-LAGDDLPGVLVLRSLTKTWSLAGLRVGYALGA-PDVLARLTR 228 (349)
T ss_pred CCcCHHHHHHHHhc-CCEEEEECcchhhc-cC-Cccc-cccccCCCEEEEeecccccCCccceeeeeecC-HHHHHHHHh
Confidence 99999999999975 88999999996542 11 1111 111112345655 7899887 55568988864 333332211
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
....+ . ...+...+....+ +.+.++++.++..++++++.+.|+++ ++++..++
T Consensus 229 ~~~~~-----------------~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~ 284 (349)
T PRK07908 229 GRAHW-----------------P------VGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARVVDPA 284 (349)
T ss_pred cCCCC-----------------C------ccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCC
Confidence 11100 0 0111111111111 23456677788888899999999887 78877556
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
..+.+.+.+.. ...+.+.+.++|+.+..+..+. +..++|+++. +++++++++++|++
T Consensus 285 ~g~~~~~~~~~-----------------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~----~~~~~~~l~~al~~ 343 (349)
T PRK07908 285 AAPFVLVRVPD-----------------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR----PRAEVPVLVQALAE 343 (349)
T ss_pred CceEEEEECCc-----------------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC----CCccHHHHHHHHHH
Confidence 66666665532 1345666667787554443332 3579999984 45699999999988
Q ss_pred HHH
Q 038818 478 KLD 480 (486)
Q Consensus 478 ~~~ 480 (486)
+..
T Consensus 344 ~~~ 346 (349)
T PRK07908 344 ILK 346 (349)
T ss_pred HHh
Confidence 753
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=154.06 Aligned_cols=318 Identities=14% Similarity=0.093 Sum_probs=198.2
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|....+..++.+.+.+|+.+.+|++... ....++|+|+++++...+..... +++.|+++..+
T Consensus 60 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~----~~~i~~t~G~~~~l~~~~~~~~~-----------~gd~Vlv~~P~ 124 (395)
T PRK08175 60 THGYSTSRGIPRLRRAISRWYQDRYDVDIDP----ESEAIVTIGSKEGLAHLMLATLD-----------HGDTVLVPNPS 124 (395)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEccCcHHHHHHHHHHhCC-----------CCCEEEEcCCC
Confidence 3456555567889999999999887764321 01578899988887655443332 56788889999
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc---hHHHHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL---GPLCDIAKR 258 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl---~~I~~i~~~ 258 (486)
|......++..|+ +++.+|++++ ..++++|+++++... ..+.+|+++.++|++|.+-+. ++|+++|++
T Consensus 125 y~~~~~~~~~~g~---~~~~v~~~~~---~~~~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~ 195 (395)
T PRK08175 125 YPIHIYGAVIAGA---QVRSVPLVEG---VDFFNELERAIRESY---PKPKMMILGFPSNPTAQCVELEFFEKVVALAKR 195 (395)
T ss_pred CcchHHHHHHcCC---eEEEEecccC---CCcHHHHHHHHhhcc---CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9888888889999 9999999753 345889988886421 124577778889999998766 799999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCC-CC--ceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEG-AD--SFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASD 334 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~-aD--si~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~ 334 (486)
||+++++|.+|+.... .......+..+.. .| .++.++.|.++.| ..+|+++. +++... .+.....+...
T Consensus 196 ~~i~ii~De~y~~l~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~-~~~l~~-~~~~~~~~~~~---- 268 (395)
T PRK08175 196 YDVLVVHDLAYADIVY-DGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVS-ALARIKSYHDY---- 268 (395)
T ss_pred cCcEEEEecchHhhcc-CCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC-CHHHHH-HHHHHHhhccc----
Confidence 9999999999975432 1110111111111 23 4467899999755 44677664 444433 22111111000
Q ss_pred CCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCC
Q 038818 335 SKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSA 412 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~ 412 (486)
+ .......++...+ ....++++.+...+.++++.+.|++. ++.+..+.....+.+.+.+..
T Consensus 269 -------------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~ 331 (395)
T PRK08175 269 -------------G---TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPY 331 (395)
T ss_pred -------------C---CCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCccc
Confidence 0 0111112222222 23446666777778888999999887 676553444555566654321
Q ss_pred CCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 413 SGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.. .....+.+++. +.|+.+.++..+. +..++|+++. .+++.+.+.++.|.+++++
T Consensus 332 ---------~~--~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~---~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 332 ---------AA--MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI---ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred ---------CC--CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHh
Confidence 00 00235555554 4677544433332 3468999984 3567888888888887754
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-16 Score=154.32 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=186.7
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.+|++++ ++++|+|+++++..++.+..+ +++.|+++..+|..+...++..|+
T Consensus 82 ~Lr~aia~~~~v~~e-------~I~it~Gs~~ai~~~~~~l~~-----------~gd~Vli~~P~y~~~~~~~~~~g~-- 141 (370)
T PRK09105 82 DLRTLFAAQEGLPAD-------HVMAYAGSSEPLNYAVLAFTS-----------PTAGLVTADPTYEAGWRAADAQGA-- 141 (370)
T ss_pred HHHHHHHHHhCcChh-------hEEEcCChHHHHHHHHHHHcC-----------CCCEEEEeCCChHHHHHHHHHcCC--
Confidence 455667888898765 789999999988777665533 566788898999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH--hCceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR--YSIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~--~g~~lhvD~a~g~~~~ 274 (486)
+++.+|.++ ++.+|++.+++. .+. +.+|+++.++||||.+-+.++|.++++. +++|+++|++|..+.
T Consensus 142 -~~~~v~~~~--~~~~d~~~l~~~-~~~------~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~- 210 (370)
T PRK09105 142 -PVAKVPLRA--DGAHDVKAMLAA-DPN------AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFS- 210 (370)
T ss_pred -eEEEecCCC--CCCCCHHHHHhc-CCC------CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhc-
Confidence 999999875 568999999875 221 2367888999999999998888888764 489999999995432
Q ss_pred cCccchhhhcCCCCCCceee-ccccccCC-CCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSL-NAHKWFFT-TLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF 352 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~-~~hK~l~~-p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~ 352 (486)
..+....... ...+.+++ ++.|.++. ...+|+++... ......... . + . ..
T Consensus 211 ~~~s~~~~~~--~~~~vi~~~SfSK~~g~~GlRiG~~v~~~-~~i~~l~~~-~-~--------------------~--~~ 263 (370)
T PRK09105 211 DAPSVVDLVA--QRKDLIVLRTFSKLYGMAGMRLGLAAARP-DLLAKLARF-G-H--------------------N--PL 263 (370)
T ss_pred cCcchHHHHh--hCCCEEEEecccHhhcCCccceeeeecCH-HHHHHHHhc-C-C--------------------C--Cc
Confidence 1111111110 13455554 67798874 34588877643 333222111 0 0 0 01
Q ss_pred CchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHH
Q 038818 353 RALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKL 431 (486)
Q Consensus 353 ~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l 431 (486)
......++...+. .+.+++..++..++.+++.+.|++. ++++. ++..+.+.+.+... ..++
T Consensus 264 ~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~~f~~~~~~~~----------------~~~l 325 (370)
T PRK09105 264 PVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYKCT-PSQANCFMVDVKRP----------------AKAV 325 (370)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcC-CCCCcEEEEeCCCC----------------HHHH
Confidence 2223333444332 3456667778888899999999886 77765 45556555444211 2456
Q ss_pred HHHHHhcCcEEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 432 LESINASGQLYVSHGMVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 432 ~~~l~~~g~~~~~~~~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.+.|.++|+. +.. .+. ..+++|+++. +++++++++++|+++.
T Consensus 326 ~~~L~~~gI~-v~~-~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 326 ADAMAKQGVF-IGR-SWPIWPNWVRVTVG----SEEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHCCcE-Eec-CCCCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 7777777875 322 222 2578999985 4568999999998764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=157.73 Aligned_cols=215 Identities=17% Similarity=0.179 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----HHH
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK----AAQ 190 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~----a~~ 190 (486)
..++.+.++++.|.+. .+++++|+.++..++ .... +++.|+++...|.+... .+.
T Consensus 52 ~~~Le~~lA~l~g~~~---------~~~~~sG~aai~~~~-~~l~-----------~Gd~Viv~~~~y~~~~~~~~~~~~ 110 (377)
T PRK07671 52 RAALEELIAVLEGGHA---------GFAFGSGMAAITAVM-MLFS-----------SGDHVILTDDVYGGTYRVMTKVLN 110 (377)
T ss_pred HHHHHHHHHHHhCCCc---------eEEeCCHHHHHHHHH-HHhC-----------CCCEEEECCCccchHHHHHHHHHh
Confidence 3344456888888653 467777776654332 2211 56678888887764332 344
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
..|+ +++.++. .|+++++++|++++ .+|+++.++|++|.+.|+++|+++|+++|+++++|++|+
T Consensus 111 ~~G~---~v~~v~~-------~d~~~l~~ai~~~t------klV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 111 RFGI---EHTFVDT-------SNLEEVEEAIRPNT------KAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred cCCe---EEEEECC-------CCHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 5677 7877753 38899999987644 478889999999999999999999999999999999997
Q ss_pred chhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 271 GSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
......+ .. .++|.++.+++|++++|.+ .|+++++++....+..... .+.
T Consensus 175 ~~~~~~p-~~------~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~-~~~-------------------- 226 (377)
T PRK07671 175 TPYWQSP-IS------LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ-NST-------------------- 226 (377)
T ss_pred ccccCCh-hh------hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHH-Hhh--------------------
Confidence 6433221 11 2789999999999998853 6667777665543222110 111
Q ss_pred CCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 349 SRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 349 sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
+-.......|..++ |.+.+..++++..+++..+.+.|+++|++.-+
T Consensus 227 g~~~~~~~a~l~~~--~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v 272 (377)
T PRK07671 227 GGILGPQDSWLLLR--GLKTLGIRMEEHETNSRAIAEFLNNHPAVNKV 272 (377)
T ss_pred cCCCCHHHHHHHHc--CcChHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 11223455666665 45667788999999999999999999887554
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=158.02 Aligned_cols=231 Identities=19% Similarity=0.173 Sum_probs=159.9
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH-HcCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ-IAGID 195 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~-~~G~g 195 (486)
++.+.++++.|.+ .+++++||++|+..++.+... +++.|+++...|.+....+. +.+.+
T Consensus 55 ~le~~lA~l~g~~---------~v~~~~gg~~Ai~~~l~all~-----------~GD~Vl~~~p~y~~~~~~~~~~~~~~ 114 (382)
T TIGR02080 55 LLQQALAELEGGA---------GAVVTNTGMSAIHLVTTALLG-----------PDDLLVAPHDCYGGTYRLLNALAKKG 114 (382)
T ss_pred HHHHHHHHHhCCC---------cEEEEcCHHHHHHHHHHHHcC-----------CCCEEEEcCCCcHHHHHHHHHHHhhc
Confidence 3445678887732 578999999988776665432 56778888888876444332 23221
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI 275 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~ 275 (486)
.-++..++ ..|++++++++++.+ .+|+++.++|++|.+-|+++|+++|+++|+++++|++|+.+...
T Consensus 115 ~~~v~~~d-------~~d~~~l~~ai~~~t------klV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~ 181 (382)
T TIGR02080 115 CFRVLFVD-------QGDEQALRAALAQKP------KLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ 181 (382)
T ss_pred CeEEEEEC-------CCCHHHHHHhcCcCc------eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC
Confidence 11444442 238899999887543 47888999999999999999999999999999999999765432
Q ss_pred CccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 276 CPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 276 ~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
.+ .. .++|.++.+++||++++.+ .|++.+++++...+.. ....++ +....
T Consensus 182 ~p-l~------~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~-~~~~~~--------------------g~~~s 233 (382)
T TIGR02080 182 NP-LA------LGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELA-WWANNL--------------------GVTGG 233 (382)
T ss_pred Cc-hh------hCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHH-HHHHcc--------------------CCCCC
Confidence 21 11 1689999999999998765 6777777665433221 111111 11235
Q ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC-----C-----------CeeEEEEEeec
Q 038818 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP-----R-----------NFAVVCFRVLP 410 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~-----~-----------~~~~v~f~~~~ 410 (486)
.+..|..++ |.+.+..++++..+++..+.++|+++|.++-+ .| | ..++++|.+..
T Consensus 234 p~~a~l~lr--~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 234 AFDSYLTLR--GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 566677766 55788888999999999999999999987643 22 1 14588888853
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=155.35 Aligned_cols=273 Identities=14% Similarity=0.060 Sum_probs=175.9
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++++++++|.+++ ..++|+|+++++..+ ..+.. ++ .|++...+|.++...++..|+
T Consensus 50 ~~lr~~la~~~~~~~~-------~i~~t~G~~~~i~~~-~~~l~-----------~g-~vl~~~p~y~~~~~~~~~~g~- 108 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA-------SVLPVNGAQEAIYLL-PRLLA-----------PG-RVLVLAPTYSEYARAWRAAGH- 108 (330)
T ss_pred HHHHHHHHHHhCCChh-------hEEECCCHHHHHHHH-HHHhC-----------CC-eEEEeCCCcHHHHHHHHHcCC-
Confidence 4566778888887654 678888888776543 22221 34 466777889899999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccch
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+++.++ |++.|++++++ + .+|+++.++|++|.+-| +++|+++|+++|+++++|.+|..+
T Consensus 109 --~~~~~~---------d~~~l~~~~~~-~------~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~ 170 (330)
T TIGR01140 109 --EVVELP---------DLDRLPAALEE-L------DVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDF 170 (330)
T ss_pred --EEEEeC---------CHHHHHhhccc-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECccccc
Confidence 888775 77888888742 2 26778899999999988 677788889999999999999765
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
.. .+....... ...-+.+..+++|+++.| ..+|+++.+++ .+......... + .
T Consensus 171 ~~-~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~l~~~~~~-----------------~------~ 224 (330)
T TIGR01140 171 TP-DASLAPQAA-RFPGLVVLRSLTKFFGLAGLRLGFVVAHPA-LLARLREALGP-----------------W------T 224 (330)
T ss_pred CC-ccchhhHhc-cCCCEEEEEecchhhcCchhhhhheeCCHH-HHHHHHhcCCC-----------------C------C
Confidence 42 111111111 113457788999999844 56788887654 33322111110 0 0
Q ss_pred CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+...++.+.+... ..+...++..++.+++.+.|++++.+++. ++....+.+.+.+ ..+
T Consensus 225 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~~-----------------~~~ 286 (330)
T TIGR01140 225 VNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTPD-----------------AAA 286 (330)
T ss_pred chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcCC-----------------HHH
Confidence 1223334444444333 34566778888999999999998666654 3333333333221 235
Q ss_pred HHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
+.++|.++|+.+.++..+. +..++|+++.. ..++ ++++++|
T Consensus 287 l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~---~~~~-~~~~~~l 329 (330)
T TIGR01140 287 LHEALARRGILIRDFDNFPGLDPRYLRFALPT---DEEN-DRLEEAL 329 (330)
T ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEEEecC---HHHH-HHHHHhh
Confidence 6777878887655544443 35689999853 3345 8888776
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=155.74 Aligned_cols=336 Identities=11% Similarity=0.085 Sum_probs=190.8
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-CCCcc------ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-NVVGF------NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-n~~~~------~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
-+..+++.......+.+++.+.+ |.+.. .|.......++|.-+.+.++++||+++..++ .-+=..||+.
T Consensus 22 ~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~----anvqp~SGs~ 97 (399)
T PF00464_consen 22 TLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWY----ANVQPHSGSQ 97 (399)
T ss_dssp SEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEE----EE---SSHHH
T ss_pred CccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccce----EEeecCCchH
Confidence 35556655444444445544433 33322 2334456789999999999999999854211 2344668899
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecC---CCchHHHHHHHH-------cCCCCCCeEEEecCCCCCcccCHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSD---QTHSALQKAAQI-------AGIDPKNFRAIKTTKSSSFTLTPESLQ 218 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~---~~H~s~~~a~~~-------~G~g~~~v~~v~~d~~~~~~~d~~~L~ 218 (486)
||+.++.+... +++.|+.-. -.|.|....... ... +++.+++|++ ++.+|.++++
T Consensus 98 An~av~~aLl~-----------pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~---~~~~y~~d~~-~~~ID~d~l~ 162 (399)
T PF00464_consen 98 ANLAVYMALLK-----------PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYF---ESVPYPVDPD-TGLIDYDELE 162 (399)
T ss_dssp HHHHHHHHHT------------TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHS---EEEEEEB-TT-TSSB-HHHHH
T ss_pred HHHHHHHHHHh-----------hcCcEEecChhhcccccccccccccccccccceE---EEEeeeeecC-CCeECHHHHH
Confidence 99877776654 555554332 246654333222 234 6778888863 6899999999
Q ss_pred HHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeecccc
Q 038818 219 AAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHK 298 (486)
Q Consensus 219 ~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK 298 (486)
+.+++.+ |.+|++-. +..-..-|++++++||++.|++|++|++|-.+.+....+..-+ +.||.++.++||
T Consensus 163 ~~a~~~k-----PklIi~G~--S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~---~~ADvvt~sThK 232 (399)
T PF00464_consen 163 KLAKEHK-----PKLIICGA--SSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPF---PYADVVTGSTHK 232 (399)
T ss_dssp HHHHHH-------SEEEEE---SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GC---CTSSEEEEESSG
T ss_pred HHHhhcC-----CCEEEECc--hhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCcc---ccceEEEeeccc
Confidence 9988764 66655543 2334567899999999999999999999987776554444333 479999999999
Q ss_pred ccCCCCcceEEEee-------------CchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHHHHh
Q 038818 299 WFFTTLDCCCLWVK-------------NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSF 364 (486)
Q Consensus 299 ~l~~p~~~g~~~~~-------------~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~ 364 (486)
.|.+|. +|+++++ +++... .+.. .++. +.+++-.. ...++..+++..
T Consensus 233 tl~GPr-ggiI~~~~~~~~~~~~~~~~~~~l~~-~I~~---avfP--------------~~qg~~h~~~iaalAval~ea 293 (399)
T PF00464_consen 233 TLRGPR-GGIILTNKGSKNVDKKGKEIDEELAE-KIDS---AVFP--------------GLQGGPHMHRIAALAVALKEA 293 (399)
T ss_dssp GG-SSS--EEEEES-SEEEE-TTS-EEEHHHHH-HHHH---HHTT--------------TT-SS--HHHHHHHHHHHHHH
T ss_pred cccccC-ceEEEEcCCccccCCcccccHHHHHH-Hhcc---ccCC--------------CcccCcchhHHHHHHHHHhcc
Confidence 999997 5888888 232221 1110 0111 11111111 224455566665
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEE
Q 038818 365 GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYV 443 (486)
Q Consensus 365 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 443 (486)
....+++..++..++|+.|.+.|.+. |++++. ..+.++|.+.+.+... ..++..+.|.+.|+. +
T Consensus 294 ~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~-------------~g~~a~~~Le~~gI~-v 358 (399)
T PF00464_consen 294 LSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGI-------------DGKEAEKALEEAGII-V 358 (399)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS--------------HHHHHHHHHHTTEE--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEeccccc-------------chHHHHHHHHhcCee-e
Confidence 55677899999999999999999997 999985 3456788887764311 123344455566764 3
Q ss_pred eeeeEC------CEeEEEEEec---CCCCcHHHHHHHHHH
Q 038818 444 SHGMVA------GIYFIRFAVG---ATLTEDRHVIAAWKV 474 (486)
Q Consensus 444 ~~~~~~------~~~~lR~~~~---~~~tt~~did~~i~~ 474 (486)
....+. ....||+... .....++|+.++.+.
T Consensus 359 nkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 359 NKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred cccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence 322221 1457999872 234456677666554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=160.34 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=152.1
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch---
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS--- 183 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~--- 183 (486)
..|....+|++ ++++.|.+. .+++++|+.|+..++.+... +++.|+++...|.
T Consensus 45 g~p~~~~lE~~----la~leg~~~---------~v~~ssG~~Ai~~~l~all~-----------~Gd~Vv~~~~~y~~t~ 100 (397)
T PRK05939 45 GTPTTAALEAK----ITKMEGGVG---------TVCFATGMAAIAAVFLTLLR-----------AGDHLVSSQFLFGNTN 100 (397)
T ss_pred CCHHHHHHHHH----HHHHhCCCe---------EEEeCCHHHHHHHHHHHHcC-----------CCCEEEECCCccccHH
Confidence 44666666655 677777653 46777778777766655432 5667777877654
Q ss_pred HHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 184 ALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 184 s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
++...+...|+ +++.+++ .|+++|++++++.+ .+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 101 ~~~~~l~~~G~---~v~~v~~-------~d~e~l~~~l~~~t------klV~vesp~NptG~v~dl~~I~~la~~~gi~l 164 (397)
T PRK05939 101 SLFGTLRGLGV---EVTMVDA-------TDVQNVAAAIRPNT------RMVFVETIANPGTQVADLAGIGALCRERGLLY 164 (397)
T ss_pred HHHHHHHhcCC---EEEEECC-------CCHHHHHHhCCCCC------eEEEEECCCCCCCCHHhHHHHHHHHHHcCCEE
Confidence 34455677788 8888875 27899999886543 47888999999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCchH-HHHHhcCCcccccCccCCCCCccCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPNA-LIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
+||++++.+..+.+. . -++|.+..++||+++++.. .|.+++.+... ..........|....... ......
T Consensus 165 ivD~t~a~~~~~~~~-~------~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 236 (397)
T PRK05939 165 VVDNTMTSPWLFRPK-D------VGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQ-WGLTQI 236 (397)
T ss_pred EEECCcccccccCcc-c------cCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhh-HHHHHH
Confidence 999999765432211 1 1799999999999997543 24444422210 000000000000000000 000000
Q ss_pred C-CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 342 K-DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 342 ~-~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
. ......+-...+...|+.++ |.+.+..++++..+++..+++.|+++|.++-
T Consensus 237 ~~~~~~~~G~~~~p~~a~l~~r--gl~tl~~R~~~~~~na~~la~~L~~~p~V~~ 289 (397)
T PRK05939 237 RKKGLRDMGATLSSEAAHRIAI--GAETLALRVDRSCSNALALAQFLEAHPKVAR 289 (397)
T ss_pred HHHHHHhcCCCCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 0 00001122234455565554 6788999999999999999999999998743
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=151.55 Aligned_cols=291 Identities=10% Similarity=0.001 Sum_probs=186.2
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHHHHHHHHcCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
.++++.+++.+|++++ +.++|+|+++++..++.+... ++ ..|+++...+..+...++..|+
T Consensus 62 ~~lr~~ia~~~~~~~~-------~I~~t~G~~~~l~~~~~~~~~-----------~g~~~vlv~~p~y~~~~~~~~~~g~ 123 (364)
T PRK04781 62 PGLRSALAALYGCAPE-------QLLIGRGSDEAIDLLVRALCV-----------PGRDAVLVTPPVFGMYAVCARLQNA 123 (364)
T ss_pred HHHHHHHHHHhCcChH-------HEEEeCCHHHHHHHHHHHhcC-----------CCCCeEEEcCCChHHHHHHHHHcCC
Confidence 3455667777788765 789999999888766654432 34 5677887777667777888999
Q ss_pred CCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH--hCceEEeeccccc
Q 038818 195 DPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR--YSIWVHVDAAYAG 271 (486)
Q Consensus 195 g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~--~g~~lhvD~a~g~ 271 (486)
+++.+|.+.+ +.+.+|++++++.+... .+.+|+++.++|+||.+-|.+++.++++. +++++++|++|..
T Consensus 124 ---~~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~ 195 (364)
T PRK04781 124 ---PLVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGE 195 (364)
T ss_pred ---EEEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchh
Confidence 9999998532 24578999886654321 13467778999999999998888888765 4799999999976
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
+.. .+........... -.+.-++.|.++ ...-+|+++.. ++...........|-
T Consensus 196 f~~-~~~~~~~~~~~~~-vi~~~SfSK~~gl~GlRvGy~v~~-~~l~~~l~~~~~~~~---------------------- 250 (364)
T PRK04781 196 FSD-VPSAVGLLARYDN-LAVLRTLSKAHALAAARIGSLIAN-AELIAVLRRCQAPYP---------------------- 250 (364)
T ss_pred hcC-CcchHHHHhhCCC-EEEEecChhhcccccceeeeeeCC-HHHHHHHHhccCCCC----------------------
Confidence 432 1111111111111 145677899998 45668887754 334332222111110
Q ss_pred CCCchHHHHHHHHh--c-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 351 RFRALKLWLVLRSF--G-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 351 ~~~~l~~~~~l~~~--g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
...+...++...+ + .+...+.+++..+.++.+.+.|++++++..+.++..+.+.+++..
T Consensus 251 -~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~----------------- 312 (364)
T PRK04781 251 -VPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDD----------------- 312 (364)
T ss_pred -CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC-----------------
Confidence 1122223333333 2 234556666777788899999998877754445555555555431
Q ss_pred HHHHHHHHHhcCcEEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLYVSHGMVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.+++.+.+.++|+.+..+..+. ...++|+++. +.++.++++++|+++.
T Consensus 313 ~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 313 AEAAFQALLAAGVVVRDQRAAPRLSDALRITLG----TPEQNDRVLAALQRTQ 361 (364)
T ss_pred HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHHH
Confidence 2356677778888655443332 2568999985 4668999999998753
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-17 Score=152.91 Aligned_cols=369 Identities=12% Similarity=0.058 Sum_probs=231.8
Q ss_pred HHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCCCCCCc
Q 038818 55 TILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKLPKSFL 133 (486)
Q Consensus 55 ~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~ 133 (486)
.|..++.+........ +| +|.-...-.+|..+.+.+...... ....|..+-+..++.+.+++.+++++|.....
T Consensus 18 ~vw~e~~~la~e~~~~--~~--LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~- 92 (420)
T KOG0257|consen 18 YVWTEINRLAAEHKVP--NP--LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDP- 92 (420)
T ss_pred cHHHHHHHHHHhcCCC--Cc--ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCC-
Confidence 4555555544433222 22 554434456677777777666533 35567777788899999999999988753210
Q ss_pred cCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC------CC
Q 038818 134 FSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT------KS 207 (486)
Q Consensus 134 ~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d------~~ 207 (486)
..++++|.|+.+++..++....+ +++.|++-++.+.+.....++.|. ..+.||.. ..
T Consensus 93 ---~~eVlVT~GA~~ai~~~~~~l~~-----------~GDeVii~eP~fd~Y~~~~~maG~---tpv~v~~~~~~g~~~s 155 (420)
T KOG0257|consen 93 ---DDEVLVTAGANEAISSALLGLLN-----------PGDEVIVFEPFFDCYIPQVVMAGG---TPVFVPLKPKEGNVSS 155 (420)
T ss_pred ---cccEEEecCchHHHHHHHHHHcC-----------CCCEEEEecCcchhhhhHHhhcCC---cceeeccccccccccC
Confidence 13799999999999989888876 788888999999999999999999 88888877 34
Q ss_pred CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchh--h
Q 038818 208 SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRH--F 282 (486)
Q Consensus 208 ~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~--~ 282 (486)
.+|.+|.+.||.++.+.++ +|+++.++||+|.+-+ |++|++||++||++++.|.+|........++.. .
T Consensus 156 ~~~~~D~~~le~~~t~kTk------~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~as 229 (420)
T KOG0257|consen 156 SDWTLDPEELESKITEKTK------AIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIAS 229 (420)
T ss_pred ccccCChHHHHhhccCCcc------EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeec
Confidence 5799999999999998765 8999999999999854 899999999999999999999664432221111 0
Q ss_pred hcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC---CchHHH
Q 038818 283 IDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF---RALKLW 358 (486)
Q Consensus 283 ~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~---~~l~~~ 358 (486)
+.|+-..-.=+.|+.|+++ +..-.|..+. ++.+....+...... ...|+..+ .+.+..
T Consensus 230 lPgm~ertitvgS~gKtf~~TGWrlGW~ig-p~~L~~~~~~vh~~~-----------------~~~~~Tp~q~A~a~a~~ 291 (420)
T KOG0257|consen 230 LPGMYERTITVGSFGKTFGVTGWRLGWAIG-PKHLYSALFPVHQNF-----------------VFTCPTPIQEASAAAFA 291 (420)
T ss_pred CCchhheEEEeccccceeeeeeeeeeeeec-hHHhhhhHHHHhhcc-----------------ccccCcHHHHHHHHHHh
Confidence 1333222233456789888 4445777776 544433222211111 11222121 111111
Q ss_pred HHHH--Hhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCc-cchHHHHHHHHHH
Q 038818 359 LVLR--SFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKAN-EGANELNRKLLES 434 (486)
Q Consensus 359 ~~l~--~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 434 (486)
..+. ..+ .....++.+...++++.|.+.|.++ |+++..+.....+...+.... ..+...+. +..+ .-++...
T Consensus 292 ~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs~~~-~~~~~~~~~~~~~--d~~~~~w 367 (420)
T KOG0257|consen 292 LELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFSLAK-SWPFFEEILEKPD--DFKFVRW 367 (420)
T ss_pred hhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEeccccc-cCCcchhhccCCC--ceeeehh
Confidence 1221 111 2345568899999999999999999 899876655444433443111 00000000 0001 1134444
Q ss_pred HH-hcCcEEEeeeeECC-------EeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 435 IN-ASGQLYVSHGMVAG-------IYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 435 l~-~~g~~~~~~~~~~~-------~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
+. +.|.+++.++.+.. ...+|+++. -+++-+++.++.|+
T Consensus 368 l~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~---k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 368 LIKEGGVVVIPPSAFGSREHIKVAERLVRFCFC---KADETLRKAIERLK 414 (420)
T ss_pred hhccCcEEEeCchhcCCchhhHHHHHHHHHHHH---hhHHHHHHHHHHHh
Confidence 44 34666676665432 335666653 24556777776666
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-16 Score=154.64 Aligned_cols=281 Identities=18% Similarity=0.138 Sum_probs=175.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc----hHHHHHHHHc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH----SALQKAAQIA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H----~s~~~a~~~~ 192 (486)
++++.+++++|.+. .+++++|++|+..++.+... +++.|+++...+ ..+...++..
T Consensus 49 ~L~~~lA~l~g~~~---------~v~~~sG~~ai~~~l~al~~-----------~Gd~Vl~~~~~~~~ty~~~~~~~~~~ 108 (376)
T PRK06460 49 ELTKKIVELENAEM---------GVAFSSGMGAISTTALALLK-----------PGNSVLVHRDMFGRSYRFFTDYLKNW 108 (376)
T ss_pred HHHHHHHHHhCCCc---------EEEeCCHHHHHHHHHHHHhC-----------CCCEEEEecCCcCcHHHHHHHHHHhh
Confidence 44456888888753 35567777777666554432 556666665433 3355677888
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|+ +++.++.+. .+.+++.+++ .+.+|+++.++|++|.+-|+++|+++|+++|+++++|++|+.+
T Consensus 109 G~---~v~~~~~~~-------~~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~ 172 (376)
T PRK06460 109 GV---NVDASNPGS-------DNIIEKAKSK------RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTP 172 (376)
T ss_pred Cc---EEEEECCCC-------HHHHHHhcCC------CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcc
Confidence 98 888887542 2334443322 2458889999999999999999999999999999999999754
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
.... .. ..++|.++.+++|+++++.+ .|+++ .+++...+.......+ +-
T Consensus 173 ~~~~----~l---~~~~divv~S~sK~l~G~~~~~~G~~~-~~~~l~~~l~~~~~~~---------------------g~ 223 (376)
T PRK06460 173 INQK----PL---ELGADIVVHSASKFLAGHNDVIAGLAA-GYGKLLNVIDQMRRTL---------------------GT 223 (376)
T ss_pred ccCC----hh---hcCCCEEEeecceeccCCCCceEEEEe-cCHHHHHHHHHHHHhc---------------------CC
Confidence 2211 11 12589999999999875532 55544 4444433221111101 00
Q ss_pred CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC----------------CCeeEEEEEeecCCC
Q 038818 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP----------------RNFAVVCFRVLPSAS 413 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~----------------~~~~~v~f~~~~~~~ 413 (486)
...+..+|.+++ |.+.++.++++..++++++.+.|+++|.++-+ .| ...++++|.+.+.
T Consensus 224 ~~~~~~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~-- 299 (376)
T PRK06460 224 SLDPHAAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGG-- 299 (376)
T ss_pred CCCHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCc--
Confidence 112334555554 56888999999999999999999999877533 22 1256888888642
Q ss_pred CCCCCCCccchHHHHHHHHHHHH--hc----Cc--EEEe-eee-----E-------CC--EeEEEEEecCCCCcHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESIN--AS----GQ--LYVS-HGM-----V-------AG--IYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~--~~----g~--~~~~-~~~-----~-------~~--~~~lR~~~~~~~tt~~did~ 470 (486)
.+...++.+.+. .. |. ..+. +.. . .| .+.+|+|++- ||.|.
T Consensus 300 -----------~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~d 363 (376)
T PRK06460 300 -----------QESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI-----EDVND 363 (376)
T ss_pred -----------HHHHHHHHHhCCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHH
Confidence 122334555432 11 11 0111 110 0 01 4679999952 37788
Q ss_pred HHHHHHHHHHHH
Q 038818 471 AWKVVQEKLDGI 482 (486)
Q Consensus 471 ~i~~l~~~~~~l 482 (486)
+++.|.+.++.+
T Consensus 364 l~~dl~~al~~~ 375 (376)
T PRK06460 364 LIEDLDRALSTL 375 (376)
T ss_pred HHHHHHHHHHhh
Confidence 888888877654
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=146.07 Aligned_cols=166 Identities=24% Similarity=0.160 Sum_probs=126.5
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH-HHHHHcCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ-KAAQIAGID 195 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~-~a~~~~G~g 195 (486)
+++++++++++.+.. .+++++|||+|+..++.+++. ++..|+++...|++.. ..+...|+
T Consensus 4 ~~~~~l~~~~~~~~~-------~~~~~~~~t~a~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~g~- 64 (170)
T cd01494 4 ELEEKLARLLQPGND-------KAVFVPSGTGANEAALLALLG-----------PGDEVIVDANGHGSRYWVAAELAGA- 64 (170)
T ss_pred HHHHHHHHHcCCCCC-------cEEEeCCcHHHHHHHHHHhCC-----------CCCEEEEeecccceehhhHHHhcCC-
Confidence 567889999964333 688999999999888887653 3556888888998887 88888899
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI 275 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~ 275 (486)
+++.++.+..+....+.+.+++.. ....|.+++++.+++++|...|+++|+++|+++|+++|+|++++++...
T Consensus 65 --~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~ 137 (170)
T cd01494 65 --KPVPVPVDDAGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASP 137 (170)
T ss_pred --EEEEeccCCCCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEeccccccccc
Confidence 999999875332223332333321 2345778999999999999999999999999999999999999877654
Q ss_pred CccchhhhcCCCCCCceeeccccccCCCCcceEEEee
Q 038818 276 CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK 312 (486)
Q Consensus 276 ~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~ 312 (486)
.+.... ...++|+++.++||++++ .++|++++|
T Consensus 138 ~~~~~~---~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 138 APGVLI---PEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccc---ccccCCEEEEEcccccCC-CceEEEEeC
Confidence 422111 123799999999999998 689999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=153.08 Aligned_cols=293 Identities=11% Similarity=0.033 Sum_probs=188.7
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.+|++++ +.++|+|+++++..++.+..+ +++.|++...+|+.+...+...|.
T Consensus 71 ~Lr~~ia~~~~~~~~-------~I~it~G~~~~l~~~~~~~~~-----------~gd~vlv~~p~y~~~~~~~~~~g~-- 130 (369)
T PRK08153 71 DLRHALAAHHGVAPE-------NIMVGEGIDGLLGLIVRLYVE-----------PGDPVVTSLGAYPTFNYHVAGFGG-- 130 (369)
T ss_pred HHHHHHHHHhCCCHH-------HEEEcCCHHHHHHHHHHHhcC-----------CCCEEEECCCcchHHHHHHHHcCC--
Confidence 444556666787665 688999988877655554333 677888899999998888888998
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~~ 274 (486)
+++.+|.+. + .+|++++++.+.... +.+|+++.++||||.+-|.+++.++++.. ++|+++|.+|+.+..
T Consensus 131 -~~~~vp~~~--~-~~~~~~l~~~~~~~~-----~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~ 201 (369)
T PRK08153 131 -RLVTVPYRD--D-REDLDALLDAARREN-----APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAP 201 (369)
T ss_pred -eEEEeeCCC--C-CCCHHHHHHHhcccC-----CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcC
Confidence 999999864 2 578888877664321 33677788999999999988888777654 899999999975432
Q ss_pred cCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
...... +.....--.+..++.|.++.| .-+|+++.. ++... .+....... ...
T Consensus 202 -~~~~~~-~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~-~~~~~-~l~~~~~~~----------------------~~s 255 (369)
T PRK08153 202 -AGAAPP-IDTDDPNVIRMRTFSKAYGLAGARVGYAIGA-PGTIK-AFDKVRNHF----------------------GMN 255 (369)
T ss_pred -cccchh-hhhcCCCEEEEecchHhccCcchheeeeecC-HHHHH-HHHHhhcCC----------------------CCC
Confidence 111111 111111124566789999844 457877764 33332 221110000 012
Q ss_pred chHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHH
Q 038818 354 ALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLL 432 (486)
Q Consensus 354 ~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 432 (486)
.+..+++...+. .+.+++..+...++.+++.+.|++. ++.+. ++..+.+.+.+... .....++.
T Consensus 256 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~-------------~~~a~~l~ 320 (369)
T PRK08153 256 RIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRD-------------GAFARAVL 320 (369)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCC-------------cccHHHHH
Confidence 334444444443 3446666777778888888888876 66643 44455544444321 12355778
Q ss_pred HHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 433 ESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 433 ~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
++|.++|+.+..+....+..++|+++. +++++++++++|+++...+.
T Consensus 321 ~~l~~~Gi~v~~p~~~~~~~~iRis~~----~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 321 DGLIARDIFVRMPGVAPLDRCIRVSCG----PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred HHHHHCCeEEeeCCCCCCCCeEEEecC----CHHHHHHHHHHHHHHHHHhh
Confidence 888888985423433233568999984 57799999999999886554
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-15 Score=151.82 Aligned_cols=299 Identities=14% Similarity=0.091 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
..++.+.+++++|.+ ..+++++||+||..|+.++|.......+....+..+|..+...|-+...+....+-
T Consensus 85 ~~~l~~~l~~~~~~~---------~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~ 155 (401)
T PRK00854 85 LAPLYEELAALTGSH---------KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTD 155 (401)
T ss_pred HHHHHHHHHhhCCCC---------EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCC
Confidence 334455677777653 47999999999999999998652211111000234555666667654433322110
Q ss_pred C---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCc
Q 038818 195 D---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSI 261 (486)
Q Consensus 195 g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~ 261 (486)
+ ...+..+| ..|+++|+++|.+. +.+|+++.+.+++|.+.| +++|+++|++||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~-------~~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi 222 (401)
T PRK00854 156 PDARGGFGPFTPGFRVVP-------FGDAEALEAAITPN------TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNV 222 (401)
T ss_pred ccccccCCCCCCCeEEeC-------CCCHHHHHHHhCCC------eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 0 01233343 24889999988643 358999999999999877 9999999999999
Q ss_pred eEEeeccccchhccCcc-chhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 262 WVHVDAAYAGSACICPE-FRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~-~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
++++|++|.+.. ..+. +.....++ ..|.++++ |++.+.+ .+|+++.+++ ... .+.. ....
T Consensus 223 ~lI~DEv~~g~g-~~g~~~~~~~~g~-~~D~~~~~--K~l~gg~~~ig~v~~~~~-~~~-~l~~----~~~~-------- 284 (401)
T PRK00854 223 TLILDEIQTGLG-RTGKLLAEEHEGI-EADVTLIG--KALSGGFYPVSAVLSNSE-VLG-VLKP----GQHG-------- 284 (401)
T ss_pred EEEEechhhCCC-CCchHhHHhhcCC-CCCEEEec--ccccCCccCeEEEEEcHH-HHh-cccC----CCCC--------
Confidence 999999997532 2211 11111222 45777764 9988663 5777776554 222 2210 0000
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec--CCCeeEEEEEeecCCCCCCC
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA--PRNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~v~f~~~~~~~~~~~ 417 (486)
.++ + ...+.+++++..+..-.-.++.++..++++++.+.|+++. ...+. .+...++.+.+.+.
T Consensus 285 ----~t~-~---~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~------ 349 (401)
T PRK00854 285 ----STF-G---GNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPE------ 349 (401)
T ss_pred ----CCC-C---cCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecC------
Confidence 011 1 1333344444433110112356778888999999998763 22211 23345566655432
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
......+.+.|.++|+.. .+ .+..++|+++ +...+++||+++++.|++++.
T Consensus 350 -------~~~~~~~~~~L~~~GV~v-~~---~~~~~lR~~p-~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 350 -------AGGARQYCEALKERGLLA-KD---THDHTIRLAP-PLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred -------chhHHHHHHHHHHCCeEE-ec---CCCCEEEEeC-CcccCHHHHHHHHHHHHHHhh
Confidence 112346777787888753 32 2346899997 456788899999999998754
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=151.19 Aligned_cols=319 Identities=13% Similarity=0.063 Sum_probs=194.7
Q ss_pred HHHHHHHhhcCCC--ccccccChhhHHHHHHHHHHHHHHcC----CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 89 FLGEMLSSGFNVV--GFNWMSSPAATELENIVMDWLGEMLK----LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 89 ~~~~~l~~~~n~~--~~~~~~~~~~~~le~~~~~~l~~l~g----~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
.+.+.+...++.+ ...|. .++..++.+.+.+|+.+.+| ++.+ ++++|+|+++++..++.+....
T Consensus 45 ~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~-------~I~it~Ga~~al~~~~~~~~~~-- 114 (374)
T PRK02610 45 DLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPA-------NISVGNGSDELIRSLLIATCLG-- 114 (374)
T ss_pred HHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCHH-------HEEEcCChHHHHHHHHHHHcCC--
Confidence 3445554444332 12343 24567788888888877653 3333 6889999998886555543321
Q ss_pred HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc
Q 038818 163 NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA 242 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~ 242 (486)
++..|++...++..+..+++..|+ +++.+|+++ +++.+|+++|++++++.. ...+.+|+++.++||
T Consensus 115 --------g~~~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~-~~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NP 180 (374)
T PRK02610 115 --------GEGSILVAEPTFSMYGILAQTLGI---PVVRVGRDP-ETFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSP 180 (374)
T ss_pred --------CCCeEEEcCCChHHHHHHHHHcCC---EEEEecCCc-ccCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCC
Confidence 223678888999999999999999 999999875 357999999999886421 112457777889999
Q ss_pred ccccCCchHHHHHHH-HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHH
Q 038818 243 ITTVDPLGPLCDIAK-RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 243 ~G~idpl~~I~~i~~-~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~ 320 (486)
||.+-+.+++.++.+ .+++|+++|.+|..+... .... .+..... -.+..++.|.++ ...-+|+++. ++......
T Consensus 181 TG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~-~~~~-~~~~~~~-~ivi~SfSK~~g~~GlRiG~~v~-~~~l~~~l 256 (374)
T PRK02610 181 TGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQT-TLVG-ELAQHPN-WVILRTFSKAFRLAAHRVGYAIG-HPELIAVL 256 (374)
T ss_pred CCCCCCHHHHHHHHhccCCcEEEEeccccccCcc-chHH-HHhcCCC-EEEEEecchhccCcccceeeeec-CHHHHHHH
Confidence 999977766666543 148999999999754211 1111 1111111 145677899996 5556888875 44343322
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
......+ + ...+...++...++. +.+.+.+++..+.++.+.+.|++++++.+. ++
T Consensus 257 ~~~~~~~-----------------~------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~ 312 (374)
T PRK02610 257 EKVRLPY-----------------N------LPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVW-PS 312 (374)
T ss_pred HHhcCCC-----------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-CC
Confidence 1111000 0 112222333333322 344444555555677788888888787753 44
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..+.+.+++.... ....+.+.+.++|+.+ .+ ..+++|+++.. .++++++++.|++++
T Consensus 313 ~g~f~~~~l~~~~--------------~~~~~~~~l~~~gi~v-~~----~~~~lRls~~~----~~~~~~~l~~l~~~l 369 (374)
T PRK02610 313 AANFLYLRLSQDA--------------ALAALHQALKAQGTLV-RH----TGGGLRITIGT----PEENQRTLERLQAAL 369 (374)
T ss_pred cceEEEEeCCCCC--------------CHHHHHHHHHHCCEEE-Ee----CCCeEEEeCCC----HHHHHHHHHHHHHHH
Confidence 4444444443210 1235666677778744 22 24589999852 357899999999887
Q ss_pred HHH
Q 038818 480 DGI 482 (486)
Q Consensus 480 ~~l 482 (486)
+.+
T Consensus 370 ~~~ 372 (374)
T PRK02610 370 TQL 372 (374)
T ss_pred hhc
Confidence 654
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-16 Score=152.67 Aligned_cols=284 Identities=13% Similarity=0.054 Sum_probs=179.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+++ ..++|+|+++++..++..... +++.|+++...+......++..|.
T Consensus 61 ~lr~~ia~~~~~~~~-------~I~~~~G~~~~l~~~~~~~~~-----------~gd~Vli~~p~y~~~~~~~~~~g~-- 120 (352)
T PRK03321 61 ELRAALAEHLGVPPE-------HVAVGCGSVALCQQLVQATAG-----------PGDEVIFAWRSFEAYPILVQVAGA-- 120 (352)
T ss_pred HHHHHHHHHhCcCHH-------HEEECCCHHHHHHHHHHHhcC-----------CCCEEEeCCCCHHHHHHHHHHcCC--
Confidence 455667777777654 678888877766554443321 566787887777677777888999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH--hCceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR--YSIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~--~g~~lhvD~a~g~~~~ 274 (486)
+++.+|.++ ++.+|++++++++++. +.+|+++.++|++|.+-|.++|.++|++ +++++++|++|+.+..
T Consensus 121 -~~~~v~~~~--~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~ 191 (352)
T PRK03321 121 -TPVQVPLTP--DHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVR 191 (352)
T ss_pred -EEEEccCCC--CCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhcc
Confidence 999999875 3689999999988653 2367778999999999999999999997 5999999999976543
Q ss_pred cCccchhhhcCCC-CCCce-eeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 275 ICPEFRHFIDGIE-GADSF-SLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 275 ~~~~~~~~~~~~~-~aDsi-~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
.. .....+..+. .-+.+ +.++.|.++.| ..+|+++.. +............+ .
T Consensus 192 ~~-~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~~~~-----------------------~ 246 (352)
T PRK03321 192 DD-DVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH-PEVIAALRKVAVPF-----------------------S 246 (352)
T ss_pred Cc-CCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCC-HHHHHHHHHhcCCC-----------------------C
Confidence 11 1111111111 12333 44789998743 357777764 33333221110000 1
Q ss_pred CCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+...++...+ ..+.+.+.+++..+..+++.+.|++. ++.+. ++..+.+.++... + ..+
T Consensus 247 ~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~-~~~g~~i~i~l~~--------------~--~~~ 308 (352)
T PRK03321 247 VNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA-GWTVP-PSQANFVWLPLGE--------------R--TAD 308 (352)
T ss_pred CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCCCEEEEeCCC--------------C--HHH
Confidence 1233333333333 23444555666666677788888876 66643 3444444444421 1 235
Q ss_pred HHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.+.+.|+.+ .+ + +..++|+++. +.++.++++++|+++..
T Consensus 309 ~~~~l~~~gI~v-~~--~-~~~~iRi~~~----~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 309 FAAAAAEAGVVV-RP--F-AGEGVRVTIG----APEENDAFLRAARAWRA 350 (352)
T ss_pred HHHHHHHCCEEE-Ec--c-CCCcEEEeeC----CHHHHHHHHHHHHHHhc
Confidence 667777778753 33 2 3346999973 56799999999988654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=163.90 Aligned_cols=321 Identities=13% Similarity=0.122 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.++...+.+|+++.+|++.+. ....++++|+++++..++.+..+ +++.|+++..+++.+..+++.
T Consensus 733 pdlr~aLa~~la~~~Gv~~d~----~e~IIvt~Gs~elL~lll~aLl~-----------pGD~VLVp~PtY~~Y~~~a~~ 797 (1082)
T PLN02672 733 TDPRPSILQFIKSNYGFPTDS----CTEFVYGDTSLALFNKLVLCCVQ-----------EGGTLCFPAGSNGTYVSAAKF 797 (1082)
T ss_pred hHHHHHHHHHHHHHhCcCCCC----CCEEEEeCCHHHHHHHHHHHHcC-----------CCCEEEEeCCChHHHHHHHHH
Confidence 456788999999999986531 11466666665555444444433 677888899999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCC-cccccc---CCchHHHHHHHHhCceEEeec
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT-TAITTV---DPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gt-t~~G~i---dpl~~I~~i~~~~g~~lhvD~ 267 (486)
.|. +++.+|+++++++.+|++.|++++++..+ + .|+++.++ ||||.+ +.+++|+++|++||+++++|.
T Consensus 798 ~Ga---~vv~Vpl~~e~gf~lD~d~Le~al~~~~~----~-~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDE 869 (1082)
T PLN02672 798 LKA---NFRRIPTKSSDGFKLTAKTLASTLETVKK----P-WVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDT 869 (1082)
T ss_pred cCC---EEEEEecccccCCCCCHHHHHHHhccCCC----C-EEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 999 99999997555689999999999864211 2 57777776 999998 457888889999999999999
Q ss_pred cccchhccCcc-----chhhhcCCCC---C-Cc-eeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 268 AYAGSACICPE-----FRHFIDGIEG---A-DS-FSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 268 a~g~~~~~~~~-----~~~~~~~~~~---a-Ds-i~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
+|+...+..+. ....+..... . .. +..++.|.++ +..-+|+++..++.... .+.....+...
T Consensus 870 aYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~-~l~~~~~~s~~------ 942 (1082)
T PLN02672 870 SFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLID-AFHSAPGLSRP------ 942 (1082)
T ss_pred CCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHH-HHHHhhhhcCC------
Confidence 99754432111 1111111111 1 12 3346775555 55578988876654433 22111111000
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHhc------hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeec
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSFG------VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~g------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~ 410 (486)
. ....+.+...+..+. .+.+.+..+...+..+++.+.|++. ++++. +|..+.+.|.-.+
T Consensus 943 -----------~--~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~-~PeGGFfLwl~l~ 1007 (1082)
T PLN02672 943 -----------H--STLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVL-EPQGGISMVAKPS 1007 (1082)
T ss_pred -----------C--cHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEe-cCCcEEEEEEEcc
Confidence 0 001122222222121 1345566667788889999999987 78765 5666666554221
Q ss_pred CCC-CCCCCCCc---cchHHHHHHHHHHHHhc-CcEEEeeeeE-CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 411 SAS-GLGDGKAN---EGANELNRKLLESINAS-GQLYVSHGMV-AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 411 ~~~-~~~~~~~~---~~~~~~~~~l~~~l~~~-g~~~~~~~~~-~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
... ........ .........+.+.|.++ |++ +.++.+ ...+++|+++. ++++++++.++.|++..+-
T Consensus 1008 ~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVa-V~PGs~FG~~g~~RIsfa---~~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672 1008 AYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLC-INSSSWTGIPGYCRFSFA---LEDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred ccccccccccccccccccCCCHHHHHHHHHHcCCEE-EecCcccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHh
Confidence 000 00000000 00000124577777765 664 444444 33679999985 3677999999999986653
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=152.53 Aligned_cols=280 Identities=9% Similarity=-0.004 Sum_probs=185.2
Q ss_pred HHHHHHHHHHhhc--CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 86 IAGFLGEMLSSGF--NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 86 ~~~~~~~~l~~~~--n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
++..+.+.+.... +.....|....+..++.+.+.+|+.+..|++.+ ..++++|+|+++++..++.+....
T Consensus 82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~-----~~~I~it~Ga~~al~~~~~~l~~~--- 153 (407)
T PLN02368 82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSD-----PELIFLTDGASKGVMQILNAVIRG--- 153 (407)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-----hhhEEEcccHHHHHHHHHHHHcCC---
Confidence 4555555554421 222345665556678999999999988886432 127899999999987776665411
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI 243 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~ 243 (486)
+++.|++...++......++..|. +++.+|++++++|.+|+++|++++++...++..+.+++++.++|||
T Consensus 154 -------pGd~Vli~~P~Y~~y~~~~~~~g~---~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPT 223 (407)
T PLN02368 154 -------EKDGVLVPVPQYPLYSATISLLGG---TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPT 223 (407)
T ss_pred -------CCCEEEEeCCCCccHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCC
Confidence 577788899999999999999999 9999999865568999999999998644333345678888999999
Q ss_pred cccCC---chHHHHHHHHhCceEEeeccccchhccCc-cc---hhhhcCC----C-CCCce-eecccccc-C-CCCcceE
Q 038818 244 TTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICP-EF---RHFIDGI----E-GADSF-SLNAHKWF-F-TTLDCCC 308 (486)
Q Consensus 244 G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~-~~---~~~~~~~----~-~aDsi-~~~~hK~l-~-~p~~~g~ 308 (486)
|.+-+ +++|+++|++||+|+++|.+|+....... .+ ...+..+ + ....| ..++.|.+ + ...-+|+
T Consensus 224 G~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy 303 (407)
T PLN02368 224 GQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGY 303 (407)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEE
Confidence 99844 67888899999999999999976543211 11 1111111 1 11234 45679997 4 5566888
Q ss_pred EEe--eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch------------HHHHHHHH
Q 038818 309 LWV--KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV------------ANLRNFLR 374 (486)
Q Consensus 309 ~~~--~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~------------~g~~~~~~ 374 (486)
+++ .++..+....... ... . ....+..+++...+.. +..+++.+
T Consensus 304 ~i~~~~~~~li~~~~~~~--~~~------------------~--~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (407)
T PLN02368 304 FEMTNIPPKTVEEIYKVA--SIA------------------L--SPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILE 361 (407)
T ss_pred EEEeCCCHHHHHHHHHHh--ccc------------------C--CCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHH
Confidence 875 3444433222111 000 0 1123344444444421 11234567
Q ss_pred HHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE
Q 038818 375 SHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF 406 (486)
Q Consensus 375 ~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f 406 (486)
...+.++.+.+.|+++|++.+. +|+..++.|
T Consensus 362 ~~~~rr~~~~~~L~~~~g~~~~-~P~Gafy~~ 392 (407)
T PLN02368 362 SLRRRARMMTDGFNSCKNVVCN-FTEGAMYSF 392 (407)
T ss_pred HHHHHHHHHHHHHhCCCCeEeC-CCCeeeEec
Confidence 7788899999999999998875 567666666
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=148.93 Aligned_cols=280 Identities=11% Similarity=0.045 Sum_probs=179.7
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++.+++.+|.+.. .+++|+|+++++..++. +.. ++.+|+. .+++......++..|+
T Consensus 43 ~~lr~~ia~~~~~~~~-------~I~it~Gs~~~l~~~~~-~~~-----------~~~vv~~-~P~y~~y~~~~~~~G~- 101 (332)
T PRK06425 43 TDIEDQIKIYTQGLKI-------KVLIGPGLTHFIYRLLS-YIN-----------VGNIIIV-EPNFNEYKGYAFTHGI- 101 (332)
T ss_pred HHHHHHHHHHhCCCcc-------eEEECCCHHHHHHHHHH-HhC-----------CCcEEEe-CCChHHHHHHHHHcCC-
Confidence 4556778888898765 68999999988866554 221 4444544 7888899999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccch
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+++.||++. ..+|.+.+++ . .+.+|+++.++||||.+-+ +++|.++|+++|+|+++|.+|+-+
T Consensus 102 --~v~~vp~~~---~~~~~~~l~~----~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~ 167 (332)
T PRK06425 102 --RISALPFNL---INNNPEILNN----Y-----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDF 167 (332)
T ss_pred --eEEEEeCCc---ccCcHHHHhh----c-----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcc
Confidence 999999974 3456655542 1 2346777899999999865 677778889999999999999765
Q ss_pred hccCccchhhhcCCCCC-C-ceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 273 ACICPEFRHFIDGIEGA-D-SFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~a-D-si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
.... ........... . .+..++.|.++ ...-+|+++..+ +..........++ +.
T Consensus 168 ~~~~--~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~-~li~~l~~~~~~~-----------------~~--- 224 (332)
T PRK06425 168 VPNR--AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD-YNMKISRKITEPW-----------------SV--- 224 (332)
T ss_pred cccc--chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH-HHHHHHHHcCCCC-----------------cc---
Confidence 3211 11111111111 2 34567899999 445678877643 3333222111111 00
Q ss_pred CCCCchHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 350 RRFRALKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
.... ...+.....+. +++..+...+..+++.+.|+++ ++++..++..+.+.+++. . .
T Consensus 225 ---~~~~-~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~-~----------------~ 282 (332)
T PRK06425 225 ---CDPA-IDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP-D----------------A 282 (332)
T ss_pred ---CHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC-C----------------H
Confidence 1111 11222222222 3456777778888999999887 788765566666666653 1 2
Q ss_pred HHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.++.+.+.++|+.+..+..+. +.+++|+++. +.++.++++++|+++.
T Consensus 283 ~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 283 HDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR----RRSFNIKLVNALRNFL 331 (332)
T ss_pred HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHHh
Confidence 356677777887655444432 2469999984 4569999999998764
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-16 Score=153.64 Aligned_cols=294 Identities=13% Similarity=0.111 Sum_probs=189.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH-
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK- 187 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~- 187 (486)
...+.-...+.+.++.+-|.+ ..+++++|+.|+..++.+... +++.|+++...|.+...
T Consensus 60 R~gnPt~~~Le~~la~le~~~---------~~v~~sSG~aAi~~~l~all~-----------~GD~Vlv~~~~Y~~~~~l 119 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEGSA---------GTILVPSGLAAVTVPFLGFLS-----------PGDHALIVDSVYYPTRHF 119 (395)
T ss_pred CCCChHHHHHHHHHHHHhCCC---------CEEEECcHHHHHHHHHHHhcC-----------CCCEEEEccCCcHHHHHH
Confidence 333444444556677776533 357777788888766655433 67788899888887654
Q ss_pred ---HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 188 ---AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 188 ---a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
.++..|+ ++..++.+ +.+.+++++++.+ .+|+++.++|+++.+.||++|+++|+++|++++
T Consensus 120 ~~~~l~~~Gi---~v~~vd~~-------~~e~l~~al~~~T------klV~lesPsNP~l~v~dl~~I~~la~~~g~~vv 183 (395)
T PRK05967 120 CDTMLKRLGV---EVEYYDPE-------IGAGIAKLMRPNT------KVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVM 183 (395)
T ss_pred HHHHHHhcCe---EEEEeCCC-------CHHHHHHhcCcCc------eEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEE
Confidence 4567788 88887532 4577888887654 489999999999999999999999999999999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
||++|+.+...-| .. -++|.+..+..|++++... .|++. .++....+... +..
T Consensus 184 VD~t~a~p~~~~p-l~------~GaDivv~S~tKy~~Gh~d~~~G~v~-~~~~~~~~l~~----~~~------------- 238 (395)
T PRK05967 184 MDNTWATPLYFRP-LD------FGVDISIHAATKYPSGHSDILLGTVS-ANEKCWPQLLE----AHG------------- 238 (395)
T ss_pred EECCccCceecCh-hH------cCCCEEEEecccccCCCCCeeEEEEE-cCHHHHHHHHH----HHH-------------
Confidence 9999977543322 12 1899999999999765321 55444 44433222110 000
Q ss_pred CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecCC----------------CeeEEE
Q 038818 343 DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAPR----------------NFAVVC 405 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~----------------~~~~v~ 405 (486)
..|-...+..+|..++ |.+-+.-++++..++|..+.+.|+++|.++ |..|. ..++++
T Consensus 239 ----~~G~~~~p~da~l~~r--gl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~s 312 (395)
T PRK05967 239 ----TLGLCAGPDDTYQILR--GLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFS 312 (395)
T ss_pred ----HcCCCCCHHHHHHHHc--CcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 0111234556676665 678889999999999999999999999874 43331 146889
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHh--cCcE------EEeeeeE---------CCEeEEEEEecCCCCcHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINA--SGQL------YVSHGMV---------AGIYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~------~~~~~~~---------~~~~~lR~~~~~~~tt~~di 468 (486)
|.+.... ....+...++.+.+.- .+.- .+.+... ...+.+|+|++- ||.
T Consensus 313 f~l~~~~---------~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~~~~~~~~~~~~~~~~liRlSvGl-----Ed~ 378 (395)
T PRK05967 313 FVLAAGP---------EKGKAKAHAFLDALEIFGLGYSWGGYESLALHVKLGDRTVAKAPYAGPVIRLQIGL-----EDV 378 (395)
T ss_pred EEEcCCC---------cccHHHHHHHHHhCCcceEccCCCCcceeeeeCCCChhHhhhccCCCCeEEEEecc-----CCH
Confidence 9886320 0002233455554421 1110 1111000 012479999952 267
Q ss_pred HHHHHHHHHHHHHHh
Q 038818 469 IAAWKVVQEKLDGIL 483 (486)
Q Consensus 469 d~~i~~l~~~~~~l~ 483 (486)
|.+++.|.+.++.+.
T Consensus 379 ~dLi~Dl~~Al~~~~ 393 (395)
T PRK05967 379 PDLKADLERGFAAAS 393 (395)
T ss_pred HHHHHHHHHHHHhhh
Confidence 777888877776543
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-15 Score=151.61 Aligned_cols=301 Identities=11% Similarity=0.062 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
..+...++.+.+++++|. . .+++++|++|+..++..++..... +.++.+|+.....|.|+.....
T Consensus 89 ~~~~~~~l~~~la~~~~~-~---------~~~~~sG~~a~~~ai~~~~~~~~~-----~~~~~vi~~~~~~H~s~~~~~~ 153 (402)
T PRK07505 89 RSQILKDLEEALSELFGA-S---------VLTFTSCSAAHLGILPLLASGHLT-----GGVPPHMVFDKNAHASLNILKG 153 (402)
T ss_pred hhHHHHHHHHHHHHHhCC-C---------EEEECChHHHHHHHHHHHHhcccC-----CCCCCEEEEchhhhHhHHhhhh
Confidence 455667788889999886 2 355567788998888776532111 1134466777789988743222
Q ss_pred --HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 191 --IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 191 --~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
..+. +++.+|. .|+++|++++++.+ .+++++.+.+++|.+.|+++|.++|++||+++++|++
T Consensus 154 ~~~~~~---~v~~~~~-------~d~~~l~~~~~~~~------~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa 217 (402)
T PRK07505 154 ICADET---EVETIDH-------NDLDALEDICKTNK------TVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDA 217 (402)
T ss_pred hhhcCC---eEEEeCC-------CCHHHHHHHHhcCC------CEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECc
Confidence 2233 6777764 38899998886432 3677778889999999999999999999999999999
Q ss_pred ccchh-c-cCccch-hhhcC-CCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 269 YAGSA-C-ICPEFR-HFIDG-IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 269 ~g~~~-~-~~~~~~-~~~~~-~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
|+.+. . ....+. ..+.. ......++.+..|.++.+ .|++++.++...........+|.+
T Consensus 218 ~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~--------------- 280 (402)
T PRK07505 218 HGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAF--------------- 280 (402)
T ss_pred ccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCcee---------------
Confidence 84221 1 111111 11111 122334555789988765 366555555443321111222221
Q ss_pred cccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccc
Q 038818 345 QITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEG 423 (486)
Q Consensus 345 ~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~ 423 (486)
..+.. ....++..++..+..+.+.+..++..++...+.+.+... .....+.+..+....
T Consensus 281 --~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~~~~i~~~~~~~------------- 340 (402)
T PRK07505 281 --SQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-----QSGSFLPIRLIYIGD------------- 340 (402)
T ss_pred --CCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCEEEEEeCC-------------
Confidence 11111 112223333443344444444444444444433332111 111222222222221
Q ss_pred hHHHHHHHHHHHHhcCcEEEeeee---ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 424 ANELNRKLLESINASGQLYVSHGM---VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 424 ~~~~~~~l~~~l~~~g~~~~~~~~---~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.....++.++|.++|+++..... ..+..++|+++. ...+++|++++++.|++++++
T Consensus 341 -~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~-~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 341 -EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFR-ASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred -HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecC-ccCCHHHHHHHHHHHHHHHHh
Confidence 12345678888888985432211 113468999984 567888999999999988754
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=151.58 Aligned_cols=283 Identities=11% Similarity=0.083 Sum_probs=185.7
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCC
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPK 197 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~ 197 (486)
+++.+++.+|++++ +.++|+|+++++..++.+... +++.|+++..++..+...++..|+
T Consensus 69 Lr~aia~~~~~~~~-------~I~vt~Gs~e~i~~~~~~l~~-----------~gd~vlv~~P~y~~~~~~~~~~g~--- 127 (366)
T PRK01533 69 LRQTIANKLHVKME-------QVLCGSGLDEVIQIISRAVLK-----------AGDNIVTAGATFPQYRHHAIIEGC--- 127 (366)
T ss_pred HHHHHHHHhCCCcc-------eEEECCCHHHHHHHHHHHhcC-----------CCCEEEEcCCcHHHHHHHHHHcCC---
Confidence 45566777788765 789999999988776665533 567788898999999999999999
Q ss_pred CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHH---HHhCceEEeeccccchhc
Q 038818 198 NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIA---KRYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 198 ~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~---~~~g~~lhvD~a~g~~~~ 274 (486)
+++.||.+ ++.+|+++|++++++.+ .+|+++.++||||.+-+.+++.+++ ++++ ++++|.+|..+..
T Consensus 128 ~v~~v~~~---~~~~d~~~l~~~~~~~~------~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~ 197 (366)
T PRK01533 128 EVKEVALN---NGVYDLDEISSVVDNDT------KIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVT 197 (366)
T ss_pred EEEEeecC---CCCcCHHHHHHHhCcCC------cEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhc
Confidence 99999986 34799999999886533 3677889999999998866665555 4555 6778999964332
Q ss_pred cCccchhhhcCCCCC--CceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 275 ICPEFRHFIDGIEGA--DSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 275 ~~~~~~~~~~~~~~a--Dsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
. ......+..+... -.+..++.|.++ ...-+|+++.. +............+ .
T Consensus 198 ~-~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~-~~~~~~l~~~~~~~-----------------------~ 252 (366)
T PRK01533 198 A-KDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH-EELIEKLNVVRLPF-----------------------N 252 (366)
T ss_pred c-ccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC-HHHHHHHHHhcCCC-----------------------C
Confidence 1 1111111111111 245667899998 44457776653 33332221111000 1
Q ss_pred CCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+...++...+. .+..++..+...+..+++.+.++.+ ++++. ++..+.+.+.+. . ...
T Consensus 253 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~nf~~~~~~-~----------------~~~ 313 (366)
T PRK01533 253 VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIPFY-QSQTNFIFLPVE-N----------------GGE 313 (366)
T ss_pred cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCccC-CCcCcEEEEeCC-C----------------HHH
Confidence 23344445555443 2445566666677788888888876 67754 556666666552 1 135
Q ss_pred HHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 431 LLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+.+.|.++|+.+- + + ..++|+++. +.++.++++++|+++.+..-+
T Consensus 314 ~~~~l~~~GI~Vr-~--~--~~~iRis~~----~~~~~~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 314 IYEACAHAGFIIR-P--F--PNGVRITVG----TREQNEGVISVLQQHFENKKR 358 (366)
T ss_pred HHHHHHHCCcEEc-c--C--CCceEEeCC----CHHHHHHHHHHHHHHHHhccc
Confidence 6777778898543 3 2 357999985 456999999999988765433
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-15 Score=149.27 Aligned_cols=303 Identities=13% Similarity=0.065 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
...++.+.|+++++.+ ..+++++|++||..|+.++|.....+.+ . .+..+|......|-+..-+....|
T Consensus 78 ~~~~la~~L~~~~~~~---------~~~f~~SGseA~e~Alk~ar~~~~~~~~-~-~r~~ii~~~~~yHG~~~~~~~~~~ 146 (397)
T TIGR03246 78 PVLRLAKKLVDATFAD---------KVFFCNSGAEANEAALKLARRYALDKHG-A-DKSEIVAFKNSFHGRTLFTVSVGG 146 (397)
T ss_pred HHHHHHHHHHhhCCCC---------EEEEeCCcHHHHHHHHHHHHHHHHhcCC-C-CCCEEEEECCCcCCccHHHHHhcC
Confidence 3445566777776542 4799999999999999999876322111 0 134556666677877655555544
Q ss_pred CC---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc----CCchHHHHHHHHhC
Q 038818 194 ID---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV----DPLGPLCDIAKRYS 260 (486)
Q Consensus 194 ~g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i----dpl~~I~~i~~~~g 260 (486)
.. ...+..+|. .|+++|+++|.+. +.+|++....++.|.+ +.+++|.++|++||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g 213 (397)
T TIGR03246 147 QPKYSQGFAPLPGGIKHAPY-------NDLAAAKALISDK------TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHN 213 (397)
T ss_pred CcccccCCCCCCCceEEeCC-------CCHHHHHHHhccC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 21 012333332 2889999988642 3467777666666754 44999999999999
Q ss_pred ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
+++++|+++.|+.....-+.....++ ..|.+++ .|.+++.+..|.++.+++ . .+.+... ...
T Consensus 214 ~llI~DEv~tG~Gr~G~~~a~~~~gv-~pDi~t~--~K~lggG~pigav~~~~~-i-~~~~~~~---~~~---------- 275 (397)
T TIGR03246 214 ALLIFDEVQTGVGRTGELYAYMHYGV-TPDILTS--AKALGGGFPIGAMLTTTE-I-AAHLKVG---THG---------- 275 (397)
T ss_pred CEEEEechhhcCCccccchhhhhcCC-CCCEEEe--ehhhhCCcceeEEEEcHH-H-HHhccCC---CcC----------
Confidence 99999999965421111111111133 4677654 788876677888887654 2 2233210 000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEec--CCCeeEEEEEeecCCCCCCC
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVA--PRNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~--~~~~~~v~f~~~~~~~~~~~ 417 (486)
.+. ++.+....++.+++..+. -.++.++..++.++|++.|+++. .+.++. .....++.+.+.+..
T Consensus 276 ---~t~-~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~----- 343 (397)
T TIGR03246 276 ---TTY-GGNPLACAVAGKVLDLVN---TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAY----- 343 (397)
T ss_pred ---CCC-CCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCch-----
Confidence 011 111112222333444332 24567788888899988887652 122221 122334444443210
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
......+.+.+.++|++... .+.+++|++. +...+++|||++++.|+++++++
T Consensus 344 -------~~~~~~~~~~l~~~Gv~~~~----~g~~~lR~~p-~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 344 -------QGKAKQFVNAAAEEGVIALI----AGPNVVRFAP-SLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred -------hhHHHHHHHHHHHCCeEEee----cCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 22345778888888986432 2346899987 45778889999999999988764
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-15 Score=149.66 Aligned_cols=297 Identities=14% Similarity=0.098 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
...++.+.|+++.+.+ ..+++++||+||..|+.++|.......|....+..+|......|-+...+....+
T Consensus 83 ~~~~l~~~l~~~~~~~---------~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~ 153 (396)
T PRK04073 83 QLGPWYEKVAKLTGKD---------MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSS 153 (396)
T ss_pred HHHHHHHHHHhcCCCC---------eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcC
Confidence 3444556677776542 4789999999999999999875322111100123455555667766655555544
Q ss_pred CCC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhC
Q 038818 194 IDP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYS 260 (486)
Q Consensus 194 ~g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g 260 (486)
-.. ..+..+|. -|+++|++++++. +.+|+++.+.+++|.+-| +++|.++|++||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g 220 (396)
T PRK04073 154 EEEYKRGFGPMLPGIKKIPY-------GDLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARELCKEEN 220 (396)
T ss_pred CcccccCCCCCCCCceEeCC-------CCHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 210 01233332 1789999888643 357888888999999865 899999999999
Q ss_pred ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
+++++|++|.++......+.....++ ..|.+++ .|.++.+ ..+|.++.+++ .. +.+... . ..
T Consensus 221 ~lli~DEv~~g~g~~g~~~~~~~~~~-~pdi~~~--sK~lg~gg~~ig~~~~~~~-i~-~~~~~~---~-~~-------- 283 (396)
T PRK04073 221 VLFIADEIQTGLGRTGKLFACDWDNV-TPDMYIL--GKALGGGVFPISCVAANRD-IL-GVFTPG---S-HG-------- 283 (396)
T ss_pred CEEEEecchhCCCcCcHHHHhhhcCC-CCCEEEe--cccccCCCCcceEEEEcHH-HH-hhhcCC---C-CC--------
Confidence 99999999986422111011011122 4677765 5988866 56888877543 22 222110 0 00
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC--CCeEEecCCCeeEEEEEeecCCCCCCC
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD--NRFEIVAPRNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~v~f~~~~~~~~~~~ 417 (486)
.+. + ...+.+.+++..+..-.-..+.++..++.++|.+.|+++ +.+..+ ++...++.+.+...
T Consensus 284 ----~t~-~---~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~i~~~-~~~g~~~~~~~~~~------ 348 (396)
T PRK04073 284 ----STF-G---GNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEIDNPMIKEV-RGRGLFIGVELNEP------ 348 (396)
T ss_pred ----CCC-C---CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCcccce-ecceEEEEEEecch------
Confidence 010 1 123333444333311000234566677899999999875 222211 22344455544321
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
...+.++|.++|+++ .+ .+..++|++. +...+++|||++++.|++++
T Consensus 349 ----------~~~~~~~l~~~Gv~~-~~---~~~~~iRi~p-~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 349 ----------ARPYCEALKEEGLLC-KE---THETVIRFAP-PLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred ----------HHHHHHHHHHCCeEE-ec---CCCCEEEEEC-CcccCHHHHHHHHHHHHHHh
Confidence 245677777788753 32 2345899997 45678889999999998764
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=158.49 Aligned_cols=253 Identities=19% Similarity=0.145 Sum_probs=162.6
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEe
Q 038818 98 FNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYG 177 (486)
Q Consensus 98 ~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~ 177 (486)
.|.....|..++...++|+ .+++++|.+. .+|+.+||+||..++.+... +...|++
T Consensus 18 a~~gd~~Yg~D~~~~~l~~----~i~~l~g~e~---------a~f~~sGT~An~~al~~~~~-----------~~~~vi~ 73 (290)
T PF01212_consen 18 ANVGDDAYGEDPTTARLEE----RIAELFGKEA---------ALFVPSGTMANQLALRAHLR-----------PGESVIC 73 (290)
T ss_dssp TTSB-CCTTSSHHHHHHHH----HHHHHHTSSE---------EEEESSHHHHHHHHHHHHHH-----------TTEEEEE
T ss_pred cccCCcccCCChhHHHHHH----HHHHHcCCCE---------EEEeCCCChHHHHHHHHHHh-----------cCCceec
Confidence 3444446877877777765 4778888864 47899999999999988774 6778889
Q ss_pred cCCCchHHHHH---HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc-ccc---CCch
Q 038818 178 SDQTHSALQKA---AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI-TTV---DPLG 250 (486)
Q Consensus 178 s~~~H~s~~~a---~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~-G~i---dpl~ 250 (486)
...+|..+... ....|. +++.++.+. .|.+|+++|++.+++.......|.+|.++.+++.. |.+ +.|+
T Consensus 74 ~~~aHi~~~E~ga~~~~~G~---~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ 148 (290)
T PF01212_consen 74 ADTAHIHFDETGAIEELSGA---KLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELR 148 (290)
T ss_dssp ETTEHHHHSSTTHHHHHTTC---EEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHH
T ss_pred cccceeeeeccchhhHhcCc---EEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHH
Confidence 99999886543 255788 899998763 37999999999999865433356677777766654 555 5678
Q ss_pred HHHHHHHHhCceEEeeccccchhccC--ccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccc
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACIC--PEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~--~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
+|.++|++||+++|+|||.-+..... ...+... ..+|++++++.|.++.|. |.+++-+++.+.+.+.. ..++
T Consensus 149 ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~-~k~~ 222 (290)
T PF01212_consen 149 AISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AGADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQ-RKRL 222 (290)
T ss_dssp HHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TTSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hhCCEEEEEEEccccccc--ceEEEechHHHHHHHHH-HHHh
Confidence 88899999999999999964432211 1122222 489999999999999884 44444444433333211 1111
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHH---HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeE
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKL---WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAV 403 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 403 (486)
.+.- |....+.+ +......+.+.......+..+++++|.+.|+.+ ++.+..++.++.
T Consensus 223 gg~~-----------------~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~-~~~~~~~~~tn~ 282 (290)
T PF01212_consen 223 GGGM-----------------RQAGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEAL-GGVLPRPVETNQ 282 (290)
T ss_dssp THHH-----------------HHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEE-CEEEETTSS-HH
T ss_pred ccCe-----------------eecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCcE
Confidence 1100 00011111 111222223333667788899999999999998 566666655443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-16 Score=152.95 Aligned_cols=229 Identities=20% Similarity=0.143 Sum_probs=152.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|...++|+. ++++.+ + ..+++++|+.|+..++.+... +++.|+++...|+...
T Consensus 49 ~~p~~~~Le~~----lA~l~~--~--------~~v~~~sG~~Ai~~~l~all~-----------~Gd~Vl~~~~~y~~~~ 103 (366)
T PRK07582 49 SNPTWRALEAA----LGELEG--A--------EALVFPSGMAAITAVLRALLR-----------PGDTVVVPADGYYQVR 103 (366)
T ss_pred CCccHHHHHHH----HHHHcC--C--------CEEEECCHHHHHHHHHHHhcC-----------CCCEEEEeCCCcHhHH
Confidence 34455566655 556552 2 467888888887666654322 5677888877886655
Q ss_pred HHH----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAA----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..+ ...|+ +++.++.++. + + .+.++ +.+|+++.++|++|.+.|+++|+++|+++|++
T Consensus 104 ~~~~~~l~~~G~---~v~~v~~~~~--~----~----~~~~~------t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~ 164 (366)
T PRK07582 104 ALAREYLAPLGV---TVREAPTAGM--A----E----AALAG------ADLVLAETPSNPGLDVCDLAALAAAAHAAGAL 164 (366)
T ss_pred HHHHHHHhcCeE---EEEEECCCCh--H----H----HhccC------ceEEEEECCCCCCCCccCHHHHHHHHHHcCCE
Confidence 443 44688 8888887531 1 1 11122 34688889999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||++|+......+ . . .++|.++.++|||+++|.+ +|+++.+++....+.. ....+..
T Consensus 165 lvVD~t~~~~~~~~p-~----~--~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~-~~~~~~g----------- 225 (366)
T PRK07582 165 LVVDNTTATPLGQRP-L----E--LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVE-RWRLLAG----------- 225 (366)
T ss_pred EEEECCCCCccccCc-h----h--cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHH-HHHHHhC-----------
Confidence 999999864322111 1 1 1689999999999988876 4777766655433221 1111110
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C-----C-----------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P-----R-----------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~-----~-----------~~~~ 403 (486)
-....+..|..++.+ +.+..++++..+++..+.+.|+++|.++-+. | | ..++
T Consensus 226 ---------~~~~~~~a~l~~r~l--~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~ 294 (366)
T PRK07582 226 ---------AIPGPFEAWLAHRSL--GTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGL 294 (366)
T ss_pred ---------CCCCHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcce
Confidence 012345566666544 5677888999999999999999999876443 1 2 3568
Q ss_pred EEEEee
Q 038818 404 VCFRVL 409 (486)
Q Consensus 404 v~f~~~ 409 (486)
++|.+.
T Consensus 295 ~s~~~~ 300 (366)
T PRK07582 295 VSFELA 300 (366)
T ss_pred EEEEeC
Confidence 899885
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-15 Score=150.47 Aligned_cols=242 Identities=14% Similarity=0.124 Sum_probs=160.1
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.+|....+|+. ++++.|.. .++.++||+.|+..++.+... +++.|+++...+.+..
T Consensus 59 ~nPtv~~lE~~----la~leg~~---------~av~~~SG~aAi~~al~all~-----------~GD~VI~~~~~Y~~T~ 114 (432)
T PRK06702 59 GNPTLAAFEQK----LAELEGGV---------GAVATASGQAAIMLAVLNICS-----------SGDHLLCSSTVYGGTF 114 (432)
T ss_pred CCcHHHHHHHH----HHHHhCCC---------cEEEECCHHHHHHHHHHHhcC-----------CCCEEEECCCchHHHH
Confidence 36776777765 67776654 468899999999888876532 6778889988886544
Q ss_pred HH----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KA----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
.. +..+|+ ++..+.. .+|+++++++|+++++ +|++..++|+++.+-|+++|+++|+++|++
T Consensus 115 ~~~~~~l~~~Gi---~v~~vd~------~~d~~~l~~~I~~~Tk------~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~ 179 (432)
T PRK06702 115 NLFGVSLRKLGI---DVTFFNP------NLTADEIVALANDKTK------LVYAESLGNPAMNVLNFKEFSDAAKELEVP 179 (432)
T ss_pred HHHHHHHHHCCC---EEEEECC------CCCHHHHHHhCCcCCe------EEEEEcCCCccccccCHHHHHHHHHHcCCE
Confidence 43 677888 8888742 5799999999987653 677888999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEe-eCc-hHHH----HHhcCCcccccCccCCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWV-KNP-NALI----KALSTNPEFLRNKASDS 335 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~-~~~-~~~~----~~~~~~~~y~~~~~~~~ 335 (486)
+++|++++...+.-| +. .+||.++.|..||+++.-. .|.+.+ ... .+.. ......+.+........
T Consensus 180 livD~T~~tP~~~~p-l~------~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~ 252 (432)
T PRK06702 180 FIVDNTLATPYLCQA-FE------HGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQN 252 (432)
T ss_pred EEEECCCCchhhCCh-hh------cCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhc
Confidence 999999975433222 11 2899999999999996643 333333 221 1100 00000000000000000
Q ss_pred CCccC-----CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 336 KQVVD-----YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 336 ~~~~~-----~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.+... ...+....+-...++..|..++ |.+.+..++++..+++..+.+.|+++|.++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~r--gL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V 316 (432)
T PRK06702 253 FGAAAYIVKARVQLLRDYGNCMSPFNAYISNI--GLETLHLRMERHSENALAVAKWLADHERIEWV 316 (432)
T ss_pred cchhhHHHHHHHHHHHHccCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 00000 0000111222445667777766 45778899999999999999999999987654
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-14 Score=143.20 Aligned_cols=350 Identities=14% Similarity=0.125 Sum_probs=206.2
Q ss_pred CcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTL 154 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al 154 (486)
-|.+....+.+ . .+.+.-.+.+-.....|..+|...++|+. +++++|++ .++.+++||.|...+.
T Consensus 39 v~iDLltDsgT-~-aMs~~q~a~~~~GDe~yag~~s~~~lE~~----va~~~G~~---------~av~v~sGT~Al~ll~ 103 (450)
T TIGR02618 39 VYIDLLTDSGT-N-AMSDKQWAGLMMGDEAYAGSRNFYHLERT----VRELYGFK---------YVVPTHQGRGAENLLS 103 (450)
T ss_pred eEEEcccCCCc-H-HHHHHHHHHhhhcchhhcCCCcHHHHHHH----HHHHHCCC---------eEEEcCCHHHHHHHHH
Confidence 56776654433 2 23333112222223468899999999876 56677775 4689999999954432
Q ss_pred HHHHHHHHHHccccCCCCeEEEecCCCchHHHHH-HHHcCCCCCCeEEEecCC--------CCCcccCHHHHHHHHHHHH
Q 038818 155 AAARDQILNEIGRENISRLVVYGSDQTHSALQKA-AQIAGIDPKNFRAIKTTK--------SSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a-~~~~G~g~~~v~~v~~d~--------~~~~~~d~~~L~~~l~~~~ 225 (486)
..... ++++| +...|++-..+ +...|. .++-++.++ ..+|.||+++|+++|++..
T Consensus 104 ~l~l~-----------pGDeV--psn~~f~Tt~ahIe~~Ga---v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~ 167 (450)
T TIGR02618 104 QIAIK-----------PGDYV--PGNMYFTTTRYHQEKNGA---TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG 167 (450)
T ss_pred HhCCC-----------CcCEE--CCceeHHHHHHHHHhCCe---EEEeeecccccccccCCCCCCCcCHHHHHHHhcccc
Confidence 11111 45555 55788766665 677777 666664441 2358999999999998532
Q ss_pred HCCCccEEEEeecCCccc-ccc---CCchHHHHHHHHhCceEEeeccccc-hhccC----ccch-----hhhcC-CCCCC
Q 038818 226 QAGLIPLFLCATVGTTAI-TTV---DPLGPLCDIAKRYSIWVHVDAAYAG-SACIC----PEFR-----HFIDG-IEGAD 290 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~-G~i---dpl~~I~~i~~~~g~~lhvD~a~g~-~~~~~----~~~~-----~~~~~-~~~aD 290 (486)
. ...+ +|+++...+.. |.. +++++|.++|++||+++|.|||+.. .+++. +.+. ..... .+.+|
T Consensus 168 ~-~~~~-lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD 245 (450)
T TIGR02618 168 A-DKIP-YICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYAD 245 (450)
T ss_pred C-cccC-ceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCc
Confidence 1 1223 45555555554 666 6789999999999999999999865 23332 1111 11111 34799
Q ss_pred ceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHH
Q 038818 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLR 370 (486)
Q Consensus 291 si~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~ 370 (486)
++++++||-+++|. .|++.+++++...+.......| . +...+ +.-.+|.. .++..++...- -+
T Consensus 246 ~~~~S~~Kd~~~~~-GG~l~~~d~~l~~k~r~~~~~~-e-------G~~ty---Ggla~r~~--~ala~gL~e~~---~~ 308 (450)
T TIGR02618 246 GCTMSGKKDCLVNI-GGFLCMNDDEMFQSAKELVVVF-E-------GMPSY---GGLAGRDM--EAMAIGIREAV---DY 308 (450)
T ss_pred EEEEeeccCCCCCC-ceEEEeCCHHHHHHHHHHhhhc-C-------Ccccc---CchhhhhH--HHHHHHHHHhh---hH
Confidence 99999999999997 5777779887776544332222 0 00011 10011111 12222333211 12
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeE-
Q 038818 371 NFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMV- 448 (486)
Q Consensus 371 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~- 448 (486)
...++....+++|.+.|.+. |+.++.++..+.|.+.........+ ..+ --.+.|.-.| .+.|+=.+.-+.+
T Consensus 309 ~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~----~~~--~p~~al~~~ly~~~gir~~e~g~~~ 381 (450)
T TIGR02618 309 EYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIP----QDQ--FPAQSLAASIYVETGVRSMERGIVS 381 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCC----hhh--ChHHHHHHHHHHHhCccEEeeccee
Confidence 55677778899999999998 8999877777887775432111000 011 1122333333 3555521111111
Q ss_pred ------------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 449 ------------AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 449 ------------~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
..-..+|+.+--..-|.+++|.+.+.|..+.++
T Consensus 382 ~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 382 AGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred cccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 113579999844444677999999999988753
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-15 Score=150.05 Aligned_cols=290 Identities=14% Similarity=0.133 Sum_probs=172.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH------HHHHHH
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA------LQKAAQ 190 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s------~~~a~~ 190 (486)
.+.+.+++++|.+. .+++++|+.|+..++... . ++..|+++...|++ +...++
T Consensus 131 ~~e~~lA~l~Gae~---------a~vv~sgtaAl~l~l~~l-~-----------~GdeVIvs~~e~~~~ggs~~i~~~~~ 189 (464)
T PRK04311 131 ALAALLCALTGAED---------ALVVNNNAAAVLLALNAL-A-----------AGKEVIVSRGELVEIGGAFRIPDVMR 189 (464)
T ss_pred HHHHHHHHHhCCCe---------EEEECCHHHHHHHHHHHh-C-----------CCCEEEEcchhhhhcCcchhhHHHHH
Confidence 57788999999763 577888888887766432 1 56678888776663 344567
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc--cc--ccCCchHHHHHHHHhCceEEee
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA--IT--TVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~--~G--~idpl~~I~~i~~~~g~~lhvD 266 (486)
..|+ +++.|+++. ..++++++++|+++++ +|+.++.+|+ +| ..-|+++|+++|++||+++++|
T Consensus 190 ~~G~---~l~~v~~~~----~t~~~dle~aI~~~Tk------lV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD 256 (464)
T PRK04311 190 QAGA---RLVEVGTTN----RTHLRDYEQAINENTA------LLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYD 256 (464)
T ss_pred HCCc---EEEEECCCC----CCCHHHHHHhcCccCe------EEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEE
Confidence 7888 888887642 5689999999987653 6788888775 45 5679999999999999999999
Q ss_pred ccccchh----c---cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 267 AAYAGSA----C---ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 267 ~a~g~~~----~---~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
++.|... + ..|.....+. .++|.+++++|||+++|. +|+++.+++ .+.+ +...+ ....
T Consensus 257 ~gsG~l~~~~~~gl~~~p~~~~~l~--~GaDiv~fSg~K~LgGp~-~G~i~g~~~-li~~-l~~~~-~~r~--------- 321 (464)
T PRK04311 257 LGSGSLVDLSQYGLPDEPTVQELLA--AGVDLVTFSGDKLLGGPQ-AGIIVGKKE-LIAR-LKKHP-LKRA--------- 321 (464)
T ss_pred CCCcccccchhccCCCCCchhhHHh--cCCcEEEecCcccccCCc-eEEEEEcHH-HHHH-Hhhch-hHHH---------
Confidence 9654321 0 0111111111 379999999999999984 888887654 3321 21111 0000
Q ss_pred CCCCccccCCCCCCchHHHHHHHHh--------c---hHHHHHHHHHHHHHHHHHHHHHhCCC--C--eEEecC------
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSF--------G---VANLRNFLRSHVRMAQLFQELVGGDN--R--FEIVAP------ 398 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~--------g---~~g~~~~~~~~~~~a~~l~~~L~~~~--~--~~~~~~------ 398 (486)
+... .....++..++..+ + ..-+....++..++|+.+.+.|+.++ + +++...
T Consensus 322 ------lr~d-k~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gg 394 (464)
T PRK04311 322 ------LRVD-KLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGG 394 (464)
T ss_pred ------Hhcc-hHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCC
Confidence 0000 00111222222211 1 11233445677778889999998764 3 344421
Q ss_pred ---C--CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 038818 399 ---R--NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 399 ---~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
| ..+.++..+.+... ...++.++|.+...-++.. ..++. +.+-+ ....++|++.+++
T Consensus 395 gs~p~~~~~~~~v~~~~~~~-------------~~~~l~~~lr~~~~~i~~r-~~~~~--~~ld~--r~~~~~~~~~~~~ 456 (464)
T PRK04311 395 GSLPVDRLPSAAVTLTPKDR-------------SLEALAARLRLLPPPVIGR-IEDGR--LLLDL--RTLEEEDEERLAA 456 (464)
T ss_pred CCCcCCCCCeEEEEEeCCCC-------------CHHHHHHHHhcCCCCEEEE-EECCE--EEEEe--CcCCHHHHHHHHH
Confidence 1 23455555544311 1234555554323223332 22333 33333 3446779999999
Q ss_pred HHHHHHH
Q 038818 474 VVQEKLD 480 (486)
Q Consensus 474 ~l~~~~~ 480 (486)
.|+++..
T Consensus 457 ~~~~~~~ 463 (464)
T PRK04311 457 ALLEALN 463 (464)
T ss_pred HHHHHhh
Confidence 9988753
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=153.79 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=151.5
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHH
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQI 191 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~ 191 (486)
.++.+.++++.|.+ ..+++++|+.|+..++.+... ++..|+++...|.+ +...+..
T Consensus 60 ~~le~~lA~l~g~~---------~~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vl~~~~~y~~t~~~~~~~~~~ 119 (418)
T TIGR01326 60 DVLEQRIAALEGGV---------AALAVASGQAAITYAILNLAQ-----------AGDNIVSSSYLYGGTYNLFKHTLKR 119 (418)
T ss_pred HHHHHHHHHHhCCC---------eEEEEccHHHHHHHHHHHHhC-----------CCCEEEEECCCcHHHHHHHHHHHHH
Confidence 34556688888864 468999999999888776543 55667777776643 3455677
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|+ +++.++.+ |+++|++++++.+ .+|+++.++|++|.+.|+++|+++|+++|+++++|++|+.
T Consensus 120 ~G~---~v~~v~~~-------d~~~l~~~l~~~t------~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~ 183 (418)
T TIGR01326 120 LGI---EVRFVDPD-------DPEEFEKAIDENT------KAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFAT 183 (418)
T ss_pred cCc---EEEEECCC-------CHHHHHHhcCcCC------eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCch
Confidence 888 88888742 7899999886543 3788889999999999999999999999999999999976
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcccccCc-cCCCCCccCC--------
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEFLRNK-ASDSKQVVDY-------- 341 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~-------- 341 (486)
+....+ .. .++|.++.+++|+++++. ..|.+++........ .... ..+... ..+.......
T Consensus 184 ~~~~~~-l~------~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~-~~~~-~~~~~~~~~q~a~~~~~~~~~~~~~ 254 (418)
T TIGR01326 184 PYLCRP-ID------HGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWA-NGRF-PLFTTPDPSYHGLVFTETFGNPAFI 254 (418)
T ss_pred hhcCCc-hh------cCCeEEEECccccccCCccceEEEEEeccccccc-cccc-ccccCCCCccccchhhhhhchhhHH
Confidence 532221 11 268999999999998653 366666654321100 0000 000000 0000000000
Q ss_pred ---C-CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 342 ---K-DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 342 ---~-~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
. .+....|-...+...|..++ |.+.+..++++..+++..+.+.|.++|++..+
T Consensus 255 ~~~~~~~~~~~G~~~~p~~a~~~~~--~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V 311 (418)
T TIGR01326 255 VKARVQLLRDLGAALSPFNAFLLLQ--GLETLSLRMERHVENALKVAEFLEAHPKVAWV 311 (418)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHC--CcccHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 0 00000111223345555444 55777778888888999999999999988654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-15 Score=150.04 Aligned_cols=325 Identities=13% Similarity=0.049 Sum_probs=193.1
Q ss_pred HHHHHHHHhhcCC-----CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 88 GFLGEMLSSGFNV-----VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 88 ~~~~~~l~~~~n~-----~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
..+.+.+...+.. ....|...++..++.+.+.+|+.+..|++.+. .+.++|+|+++++.. +.....
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-----~~I~it~Ga~~al~~-l~~~~~--- 120 (409)
T PRK07590 50 PAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISA-----DEIFISDGAKCDTGN-ILDIFG--- 120 (409)
T ss_pred HHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCCh-----hhEEECCCHHHHHHH-HHHhcC---
Confidence 3344555444432 23456556667889888999988777764321 278899998887654 322211
Q ss_pred HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCC-----------eEEEecCCCCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 163 NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKN-----------FRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~-----------v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
+++.|++...++......++..|. + ++.+|+++++.+..|.+. + .+
T Consensus 121 --------~gd~V~v~~P~Y~~~~~~~~~~g~---~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~------~~ 177 (409)
T PRK07590 121 --------PDNTIAVTDPVYPVYVDTNVMAGR---TGEANEDGRYSGIVYLPCTAENNFVPELPE------E------KV 177 (409)
T ss_pred --------CCCEEEEeCCCCcchHHHHHHcCC---cccccccccccceeEeecccccCCcccCcc------c------Cc
Confidence 567788899999999999999998 5 888998753345555321 1 24
Q ss_pred EEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCC-C--ceeeccccccC-CCC
Q 038818 232 LFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA-D--SFSLNAHKWFF-TTL 304 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~a-D--si~~~~hK~l~-~p~ 304 (486)
.+|+++.++||||.+-+ +++|+++|++||+++++|.+|+.+.... .....+..+... + .+..++.|.++ ...
T Consensus 178 k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGl 256 (409)
T PRK07590 178 DIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDP-SLPHSIYEIEGARECAIEFRSFSKTAGFTGT 256 (409)
T ss_pred eEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCC-CCCcchhhCCCcccceEEEecCccccCCcCc
Confidence 46777899999999855 6778888999999999999997643211 111112222221 2 33567899997 555
Q ss_pred cceEEEeeCchHHHHHhcC-----CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHH
Q 038818 305 DCCCLWVKNPNALIKALST-----NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSH 376 (486)
Q Consensus 305 ~~g~~~~~~~~~~~~~~~~-----~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~ 376 (486)
-+|+++..++ .+...... ...+..... ... . ....+...++...+ +.+.++++.+..
T Consensus 257 RiG~~i~~~~-li~~~~~~~~~~~~~~~~~~~~-----------~~~-~--~~s~~~q~a~~~~l~~~~~~~~~~~~~~~ 321 (409)
T PRK07590 257 RCAYTVVPKE-LKGKTSDGEGVSLNSLWNRRQS-----------TKF-N--GVSYIVQRAAEAVYSPEGKAQIKELIDYY 321 (409)
T ss_pred eeEEEEcCHH-HhhhccccchhhhHHHHHHHHh-----------hcc-c--CcCHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6888776433 22200000 000000000 000 0 01223333333322 345566777778
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeE
Q 038818 377 VRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYF 453 (486)
Q Consensus 377 ~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~ 453 (486)
.+..+.+.+.|+++ ++++..+.....+.+++.+.. + ..++.+.+.+ .|+++..+..+. +..+
T Consensus 322 ~~~r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~~~------------~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~ 386 (409)
T PRK07590 322 MENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDGM------------S--SWDFFDKLLQEANVVGTPGSGFGPSGEGY 386 (409)
T ss_pred HHHHHHHHHHHHhc-CCceecCCcceEEEEECCCCC------------C--HHHHHHHHHHHCCEEEeChhHhCCCCCCE
Confidence 88888999999887 677653334445555554310 1 1345555554 466544443332 3568
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+|+++. .+++++++.++.|.++
T Consensus 387 iRi~~~---~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 387 FRLSAF---GSRENVLEAMERIKKA 408 (409)
T ss_pred EEEEcc---CCHHHHHHHHHHHHhh
Confidence 999963 3577899998888764
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=148.73 Aligned_cols=321 Identities=15% Similarity=0.108 Sum_probs=212.1
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|....+...+...+.+++....|..... ..+++|+|+.+|+...+.+..+ +++.|++.+.+
T Consensus 125 ~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~-----~~IiiT~G~q~al~l~~~~l~~-----------pGd~v~vE~Pt 188 (459)
T COG1167 125 ALQYGPTAGLPELREAIAAYLLARRGISCEP-----EQIVITSGAQQALDLLLRLLLD-----------PGDTVLVEDPT 188 (459)
T ss_pred hhcCCCCCCcHHHHHHHHHHHHHhcCCccCc-----CeEEEeCCHHHHHHHHHHHhCC-----------CCCEEEEcCCC
Confidence 3455666778889999999999777876442 3799999988887655554433 78899999999
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc---hHHHHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL---GPLCDIAKR 258 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl---~~I~~i~~~ 258 (486)
|+....+++.+|+ +++.||+|++ .||+++|+++++... +-++.+.....||||..-++ ++|.++|++
T Consensus 189 Y~~~~~~~~~~g~---~~~~vp~d~~---G~~~e~le~~~~~~~----~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~ 258 (459)
T COG1167 189 YPGALQALEALGA---RVIPVPVDED---GIDPEALEEALAQWK----PKAVYVTPTFQNPTGVTMSLERRKALLALAEK 258 (459)
T ss_pred cHHHHHHHHHcCC---cEEecCCCCC---CCCHHHHHHHHhhcC----CcEEEECCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 9999999999999 9999999853 799999999988641 12344455678999998665 689999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCC--CCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIE--GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~--~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
||+|++-|..|+-.....+.... +..+. +=-....++.|.+.....+|++....+ .... +........
T Consensus 259 ~~~~IIEDD~y~el~~~~~p~~~-l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~-~~~~-~~~~k~~~~------- 328 (459)
T COG1167 259 YDVLIIEDDYYGELRYDGPPPPP-LKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE-LIEK-LLRLKQAAD------- 328 (459)
T ss_pred cCCeEEeeCcchhhhcCCCCCCC-hHhhCCCCCEEEEeeehhhcccccceeeeeCCHH-HHHH-HHHHHHHhc-------
Confidence 99999999999765543222211 11111 223567778999998889999887654 1111 110000000
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEecCCCeeEEEEEeecCCC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSFG--VANLRNFLRSHVRMAQLFQELVGGD-NRFEIVAPRNFAVVCFRVLPSAS 413 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~v~f~~~~~~~ 413 (486)
..+.......+...+. -| .+.+.++.+...+..+.+.+.|++. ++...+..|..+++.+--.+...
T Consensus 329 ----------~~~s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~ 397 (459)
T COG1167 329 ----------LGPSSLSQAALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGI 397 (459)
T ss_pred ----------CCCChHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCC
Confidence 0000111122222233 33 3445666666667778888888776 32333445555555543333211
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-eEC----CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQLYVSHG-MVA----GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~----~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+ ..++.++..++|+.+..+. .+. ..+++|+++.+ .+++++++.+..|.+++++...
T Consensus 398 -----------~--~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~--~~~e~i~~gi~~l~~~~~~~~~ 458 (459)
T COG1167 398 -----------D--ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS--PSEEEIEEGIKRLAALLREAAA 458 (459)
T ss_pred -----------C--HHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC--CCHHHHHHHHHHHHHHHHHHhc
Confidence 1 3467777888888655523 222 24589999964 4577999999999998887653
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-14 Score=144.48 Aligned_cols=306 Identities=12% Similarity=0.095 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
.....+.+.+++++|.+ ..+++++||+||..|+..++.......+....+..+|......|-+...++...
T Consensus 73 ~~~~~~~~~l~~~~~~~---------~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~ 143 (400)
T PTZ00125 73 DVLGLAEKYITDLFGYD---------KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSAS 143 (400)
T ss_pred HHHHHHHHHHHhCCCCC---------EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhc
Confidence 34455667777777653 468999999999999999886422211111013456666766777666655544
Q ss_pred CCCCC---------CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHh
Q 038818 193 GIDPK---------NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRY 259 (486)
Q Consensus 193 G~g~~---------~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~ 259 (486)
+-... .+..++ ..|+++|++.++. ..+.+|+++...+++|.+-| +++|.++|++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 211 (400)
T PTZ00125 144 TDPKCYNNFGPFVPGFELVD-------YNDVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKY 211 (400)
T ss_pred CCcchhccCCCCCCCceEeC-------CCCHHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 32100 112222 2389999998861 12457788888899999887 99999999999
Q ss_pred CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 260 SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 260 g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
|+++++|++|.+.......+.....++ ..|.++++ |+++.++ ++|+++.+++ ... .+... ...
T Consensus 212 ~~lli~Dev~~g~g~~G~~~~~~~~~~-~pd~~~~s--K~l~~g~~~ig~v~~~~~-~~~-~~~~~---~~~-------- 275 (400)
T PTZ00125 212 NVLLIVDEIQTGLGRTGKLLAHDHEGV-KPDIVLLG--KALSGGLYPISAVLANDD-VML-VIKPG---EHG-------- 275 (400)
T ss_pred CCEEEEeccccCCCccchhhHHHhcCC-CCCEEEEc--ccccCCCcCcEEEEEcHH-HHh-hccCC---CCC--------
Confidence 999999999965321111111111222 45777764 9998775 7888887654 222 22110 000
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEeecCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRVLPSASG 414 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~~~ 414 (486)
.++ .+.+.....+..+++.+..+++ .++..++.+++++.|+++ +.+..+ .+...++.+.+....
T Consensus 276 -----~t~-~~~~~~~~aa~~~l~~i~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~-- 343 (400)
T PTZ00125 276 -----STY-GGNPLACAVAVEALEVLKEEKL---AENAQRLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSD-- 343 (400)
T ss_pred -----CCC-CcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCc--
Confidence 000 1111111222233444322333 344455666666666543 322222 233344455554211
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
......+.+.+.++|+. +.+. +..++|++.+ ...++++|+++++.|.++++++
T Consensus 344 ----------~~~~~~~~~~l~~~Gv~-v~~~---~~~~lRi~~~-~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 344 ----------GVNAWDLCLKLKENGLL-AKPT---HDNIIRFAPP-LVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred ----------chHHHHHHHHHHHCCeE-Eeec---CCCEEEEECC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 12234667777778874 4332 3468999974 4678889999999999988876
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=159.46 Aligned_cols=362 Identities=10% Similarity=0.034 Sum_probs=229.5
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHH-------HHHHHhhcCCCcccccc
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFL-------GEMLSSGFNVVGFNWMS 107 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~l~~~~n~~~~~~~~ 107 (486)
|..++..-+++||. +.++.++++++++...+|.. ...|.|.-.-....|+++ .+|++++ .+++...++
T Consensus 46 P~~ir~~~~l~lp~-~~sE~e~~~~~~~~a~kN~~---~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaY-TPYQpEisQ 120 (954)
T PRK12566 46 PPAIRLNRPLDLPA-ALDEQAALARLRGYAEQNQV---WTSLIGMGYHGTVTPTVILRNVLENPGWYTAY-TPYQPEIAQ 120 (954)
T ss_pred CHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCC---ccccccccccCCcCcHHHHHHHHhCchhhhcC-CCCCchhhh
Confidence 66676555667885 58999999999997777654 345766322223344444 2455653 455555567
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
|.....+|.+ .++++|.|++.. +..+..++|.+- .|+.+++... +. ++..+++++..|+....
T Consensus 121 G~Lqal~e~Q--tmi~~LtGm~va-------NASl~D~atA~a-EA~~ma~~~~-~~------k~~~~~v~~~~hP~~~~ 183 (954)
T PRK12566 121 GRLEALLNFQ--QMTIDLTGLDLA-------NASLLDEATAAA-EAMALAKRVA-KS------KSNRFFVDEHCHPQTLS 183 (954)
T ss_pred HHHHHHHHHH--HHHHHHhCchhh-------hhhhccchhHHH-HHHHHHHHHh-hc------CCCEEEECCCCCHHHHH
Confidence 7777788877 899999999976 678888888544 3555444321 10 24568899999987554
Q ss_pred HH----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 188 AA----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a~----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
.. ..+|+ +++. ++|++.++++ .+.|++..++ ..|.+.++++|++++|+.|..+
T Consensus 184 v~~t~~~~~g~---~i~~-------------~~~~~~~~~~------~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~ 240 (954)
T PRK12566 184 VLRTRAEGFGF---ELVV-------------DAVDNLAAHA------VFGALLQYPD-THGEIRDLRPLIDQLHGQQALA 240 (954)
T ss_pred HHHHhhhcCCc---EEEE-------------cchhhcCCCC------EEEEEEECCC-CceEEccHHHHHHHHHHcCCEE
Confidence 43 34455 5543 2244433332 3456666665 5799999999999999999986
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-----cceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-----DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-----~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
+ +++-............ -+||.++.+++ -|+.|. ..|++.++++ ..+..|+.+.+...+..+.
T Consensus 241 ~-~~~d~laL~ll~~Pge-----~GADI~vG~~Q-~fGvp~~~GGP~ag~~a~~~~-----~~R~~PGRivG~s~D~~G~ 308 (954)
T PRK12566 241 C-VAADLLSLLVLTPPGE-----LGADVVLGSTQ-RFGVPMGYGGPHAAYFACRDD-----YKRAMPGRIIGVSRDARGN 308 (954)
T ss_pred E-EEeCHHHHhCCCChhh-----cCCcEEeeCCC-cCCCCCCCCCCCeeeeeehHH-----HHhhCCCCccceeecCCCC
Confidence 5 4444332222211111 28999865554 444443 3777888764 2244577776544333333
Q ss_pred cCCCCcccc----CCCCCCc------------hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 339 VDYKDWQIT----LSRRFRA------------LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 339 ~~~~~~~~~----~sr~~~~------------l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
..+. .++| --||..| +..-+++.++|.+|++++.++...++.+|++.|.+ .|+++..++.+.
T Consensus 309 ~a~~-l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~fF~ 386 (954)
T PRK12566 309 TALR-MALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLNRHFFD 386 (954)
T ss_pred eeee-hhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCccc
Confidence 3322 1222 1234322 22233445579999999999999999999999999 599998887788
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+.+++... ..++.++..+.|+-+-. .+ ...+.+++ ...++++||+.+++++.
T Consensus 387 ~~~v~~~~~----------------~~~~~~~a~~~~~n~r~---~~-~~~~~~s~-de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 387 TLTLEVGGA----------------QAAIIESAEAARINLRI---LG-RGRLGVSL-DETCDEATVARLFDIFL 439 (954)
T ss_pred eEEEEccCC----------------HHHHHHHHHHCCCeeEE---eC-CCeEEEEe-CCCCCHHHHHHHHHHhc
Confidence 888877211 23455565666763211 12 23578898 57889999999999984
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=149.85 Aligned_cols=230 Identities=17% Similarity=0.194 Sum_probs=157.8
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc----
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH---- 182 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H---- 182 (486)
.+|...++|+. ++++.|.+ ..+.+++|+.|+..++.+... +++.|+++...+
T Consensus 62 ~~P~~~~lE~~----la~leg~~---------~av~~sSG~aAi~~al~all~-----------~GD~Vl~~~~~yg~t~ 117 (384)
T PRK06434 62 GNPTVQAFEEK----YAVLENAE---------HALSFSSGMGAITSAILSLIK-----------KGKRILSISDLYGQTF 117 (384)
T ss_pred CChhHHHHHHH----HHHHhCCC---------cEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEecCccchHH
Confidence 56666777765 67777764 358888889888777765422 566777765422
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..+...+...|+ +++.++++..+.+.+|+ . .+.+|++..++|+++.+.|+++|+++|++++
T Consensus 118 ~~~~~~~~~~Gi---~v~fvd~~~~~~~~l~~---------~-----~tklv~~e~~snpt~~v~Di~~I~~la~~~~-- 178 (384)
T PRK06434 118 YFFNKVLKTLGI---HVDYIDTDRLNSLDFDP---------S-----NYDLIYAESITNPTLKVPDIKNVSSFCHEND-- 178 (384)
T ss_pred HHHHHHHHhcCc---EEEEECCCChhheeecC---------C-----CeeEEEEEcCCCCCceeecHHHHHHHHHHcC--
Confidence 223466778899 99999886422222221 1 1347889999999999999999999999998
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||++++......| .. .++|.+++|+||+++++.. .|++.+++++...+.... ..
T Consensus 179 lvVD~t~~s~~~~~p-l~------~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~-----~~---------- 236 (384)
T PRK06434 179 VIVDATFASPYNQNP-LD------LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVER-----RK---------- 236 (384)
T ss_pred eEEECCCCCcccCCc-hh------cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHH-----HH----------
Confidence 567999976543222 11 2799999999999998765 666667666543322110 00
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecCC----------CeeEEEEEee
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAPR----------NFAVVCFRVL 409 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~----------~~~~v~f~~~ 409 (486)
..+.....+.+|..++ |.+.+..++++..+++..+.+.|+++|.++ |..|. ..++++|.+.
T Consensus 237 ------~~G~~~~~~~A~l~~~--gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 237 ------TLGSNPDPIQAYLALR--GLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred ------hcCCCCCHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 0111224456666655 568889999999999999999999999875 33332 2568888885
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-14 Score=145.08 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=115.6
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch------HHHHHH
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS------ALQKAA 189 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~------s~~~a~ 189 (486)
..+.+.+++++|.+. .+++++|+.|+..++... . ++..|+++...|. ++...+
T Consensus 125 ~~le~~lA~l~gae~---------alvv~sg~aAi~l~l~~l-~-----------~GdeVIvs~~e~v~~ggs~~i~~~~ 183 (454)
T TIGR00474 125 SHVEGLLCELTGAED---------ALVVNNNAAAVLLALNTL-A-----------KGKEVIVSRGELVEIGGSFRIPDVM 183 (454)
T ss_pred HHHHHHHHHHhCCCc---------EEEECCHHHHHHHHHHHh-C-----------CcCEEEECCChhhhhcchhhHHHHH
Confidence 457788999999864 366778888887666432 1 5667888876652 345566
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc--cc--ccCCchHHHHHHHHhCceEEe
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA--IT--TVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~--~G--~idpl~~I~~i~~~~g~~lhv 265 (486)
+..|+ +++.++.+. ..|+++++++|+++++ +|+.++.+|+ .| .+.|+++|+++|++||++++|
T Consensus 184 ~~~G~---~~~~v~~~~----~~~l~dle~aI~~~T~------lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~viv 250 (454)
T TIGR00474 184 EQSGA---KLVEVGTTN----RTHLKDYEDAITENTA------LLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVME 250 (454)
T ss_pred HHcCC---EEEEeCCCC----CCCHHHHHHhcCcCCE------EEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 77888 888887642 4689999999977653 6777777776 46 478999999999999999999
Q ss_pred eccccchhc-------cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc
Q 038818 266 DAAYAGSAC-------ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 266 D~a~g~~~~-------~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
|++.|...- ..|.....+ -.++|.+++++|||+++|. +|+++.+++
T Consensus 251 D~~sG~l~~~~~~gl~~~p~~~~~~--~~GaDiv~fSg~K~LgGp~-~G~i~g~~~ 303 (454)
T TIGR00474 251 DLGSGSLVDLSRYGLPDEPTVQEVI--AAGVDLVTFSGDKLLGGPQ-AGIIVGKKE 303 (454)
T ss_pred ECCCcccccchhccCCCCcccccHh--HcCCCEEEecCccccCCCe-EEEEEECHH
Confidence 986543200 001111111 1379999999999999985 788887754
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-14 Score=143.32 Aligned_cols=305 Identities=10% Similarity=0.082 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC-chHHHHHHHH
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT-HSALQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~-H~s~~~a~~~ 191 (486)
....++.+.+++++|.+ ..+++++|++||..|+..+|....+..+.. .++.+|+..... |-+...++..
T Consensus 79 ~~~~~l~~~l~~~~~~~---------~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~-~~~~~i~~~~~~yhg~~~~~~~~ 148 (401)
T TIGR01885 79 DVFGEFAEYVTKLFGYD---------KVLPMNTGAEAVETAIKLARKWGYKVKGIP-ENQAIIVSAKGNFHGRTLGAISM 148 (401)
T ss_pred HHHHHHHHHHHhhcCCC---------EEEEeCccHHHHHHHHHHHHHHhhhhcCCC-CCCCEEEEECCCcCcccHHHHhC
Confidence 34455666777877753 468999999999999999987532221110 124556555555 5455555554
Q ss_pred cCC-------C--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 192 AGI-------D--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 192 ~G~-------g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
.|- + ...+..+|. .|+++|+++|++. +....+|++....+++|.+-| +++|.++|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~ 218 (401)
T TIGR01885 149 STDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTK 218 (401)
T ss_pred cCCcccccccCCCCCCceEeCC-------CCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence 431 1 012333432 2789999988642 223456777777888899877 9999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
||+++++|++|.+.......+.....++ ..|.++++ |.+++. ..+|+++.++ +.. +.+.. .+.
T Consensus 219 ~~~lli~DEv~~g~g~~G~~~~~~~~~~-~~di~~~g--K~l~~g~~~ig~v~~~~-~i~-~~~~~--~~~--------- 282 (401)
T TIGR01885 219 HNVLLIADEIQTGLGRTGKLLCVDHENV-KPDIVLLG--KALSGGVYPVSAVLADD-DVM-LTIKP--GEH--------- 282 (401)
T ss_pred cCCEEEEechhhCCCccchhhHHhhcCC-CCCEEEee--ccccCCCCCcEEEEEcH-HHH-hhccC--CCC---------
Confidence 9999999999865321111101111222 46777765 988765 4567777653 332 22211 000
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec--CCCeeEEEEEeecCCCCC
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA--PRNFAVVCFRVLPSASGL 415 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~v~f~~~~~~~~~ 415 (486)
..+. ++.+.....+..+++.+..+ .+.++..++++++++.|++++ ..++. .....++.+.+..+.
T Consensus 283 -----~~t~-~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~--- 349 (401)
T TIGR01885 283 -----GSTY-GGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESK--- 349 (401)
T ss_pred -----CCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCc---
Confidence 0011 11122223334445444332 344677778999999998873 22221 223344444443221
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
. .....++.+.|.++|+. +.+. +...+|++.+ ...++++|+++++.|++++
T Consensus 350 ------~--~~~~~~l~~~l~~~Gv~-v~~~---~~~~lRi~p~-l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 350 ------T--GRTAWDLCLKLKEKGLL-AKPT---HGNIIRLAPP-LVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred ------c--hhHHHHHHHHHHhCCEE-EEec---CCCEEEEeCC-ccCCHHHHHHHHHHHHHHh
Confidence 0 12345778888888874 3332 3468999984 6788889999999998765
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=143.01 Aligned_cols=350 Identities=14% Similarity=0.108 Sum_probs=201.9
Q ss_pred CcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTL 154 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al 154 (486)
-|.+....+.. ..+.+...+.+-.....|..+|...+||+. +++++|++ ..+.+++||.|+..+.
T Consensus 46 v~IDLlSDS~T--~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~----vAe~lG~e---------~aV~v~sGTaAl~ll~ 110 (460)
T PRK13237 46 VYIDLLTDSGT--NAMSDRQWAGMMIGDEAYAGSRNFYHLEET----VQEYYGFK---------HVVPTHQGRGAENLLS 110 (460)
T ss_pred EEEECcccCCc--hhccHHHHHHHhhcchhhcCCCcHHHHHHH----HHHHHCCC---------eEEEeCCHHHHHHHHH
Confidence 46666654333 222233222222333568889999999977 56677775 3688999999987643
Q ss_pred HHHHHHHHHHccccCCCCeEEEecCCCchHHHHH-HHHcCCCCCCeEEEecC--------CCCCcccCHHHHHHHHHHHH
Q 038818 155 AAARDQILNEIGRENISRLVVYGSDQTHSALQKA-AQIAGIDPKNFRAIKTT--------KSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a-~~~~G~g~~~v~~v~~d--------~~~~~~~d~~~L~~~l~~~~ 225 (486)
..... ++++| +...|++-.++ +...|. ..+-+..+ ...+|.||++.|+++|++..
T Consensus 111 ~l~v~-----------pGd~V--p~n~~f~Tt~ahI~~~Ga---~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~ 174 (460)
T PRK13237 111 RIAIK-----------PGQYV--PGNMYFTTTRYHQELNGG---IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG 174 (460)
T ss_pred HhCCC-----------CcCEE--CCccchHhhHHHHHhCCc---EEEeeecccccccccCCCCCCCcCHHHHHHHhcccc
Confidence 22111 45554 66777776666 566665 44433211 11358999999999998542
Q ss_pred HCCCccEEEEeecCCcccc-c---cCCchHHHHHHHHhCceEEeeccccch-hccC----ccchhh-----hc-CCCCCC
Q 038818 226 QAGLIPLFLCATVGTTAIT-T---VDPLGPLCDIAKRYSIWVHVDAAYAGS-ACIC----PEFRHF-----ID-GIEGAD 290 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G-~---idpl~~I~~i~~~~g~~lhvD~a~g~~-~~~~----~~~~~~-----~~-~~~~aD 290 (486)
. ..+.+|.++...+..| . .+++++|.++|++||+++|.|+|+..+ .++. +.+... .+ -...+|
T Consensus 175 ~--~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD 252 (460)
T PRK13237 175 A--ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYAD 252 (460)
T ss_pred C--CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCc
Confidence 1 1222455666666664 3 357899999999999999999998654 2222 112111 01 124799
Q ss_pred ceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHH
Q 038818 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLR 370 (486)
Q Consensus 291 si~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~ 370 (486)
.+++|+||.+.+|. .|++.++++++..+.......|-.. ..++. -.+|...+++ ..+...-. .
T Consensus 253 ~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~--------~tygg---~~grd~~alA--vgl~E~~~---~ 315 (460)
T PRK13237 253 GCTMSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVYEGM--------PSYGG---MAGRDMEAMA--IGIEESVQ---Y 315 (460)
T ss_pred EEEEeCCCCCCCCC-ceEEEECCHHHHHHHHHhccccCCC--------cCCCC---hhhhHHHHHH--hHHHhhch---H
Confidence 99999999999986 6888889988776544332222111 11110 0123222222 22322111 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeE-
Q 038818 371 NFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMV- 448 (486)
Q Consensus 371 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~- 448 (486)
+.+++....++||.+.|.+. |+.++.|...+-|.+.........+ ..+. -.+.|...| .+.|+=.+.-+.+
T Consensus 316 ~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~----~~~~--p~~al~~~ly~~~GiR~~e~g~~~ 388 (460)
T PRK13237 316 EYIEHRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLP----QDQF--PAQALAAELYIESGVRSMERGIVS 388 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCC----cccC--hHHHHHHHHHHHhCcCeEeeccee
Confidence 67788888999999999886 8998876555444332211000000 0110 122333333 3455421111111
Q ss_pred ------------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 449 ------------AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 449 ------------~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
..-..+|+.+--..-|.+++|.+.+.|..+.++
T Consensus 389 ~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 389 AGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred cccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 013579999844444677999999999988753
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=137.26 Aligned_cols=315 Identities=16% Similarity=0.124 Sum_probs=214.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC-Cc----h
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ-TH----S 183 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~-~H----~ 183 (486)
+....+-..+.+.++.++|...+ +.+++.+.| .|+.-+..+--+. ..+..|++++- .. |
T Consensus 72 ~~W~~lp~~lgdklApLiGA~~~-------Evvv~dtts-~nl~k~L~aalr~--------~~~r~vIv~E~~~fpTdly 135 (407)
T COG3844 72 ADWFDLPERLGDKLAPLIGARAG-------EVVVTDTTS-INLFKVLAAALRP--------QEGRRVIVSEGDNFPTDLY 135 (407)
T ss_pred CchhhchhHHHHHhhhhhcCCCC-------ceEEeCCcc-hHHHHHHHHHhcc--------CCCceEEeecCCCCCcchh
Confidence 34566777889999999999875 566666654 5555444332221 02344555543 33 3
Q ss_pred HHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 184 ALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 184 s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
.....++++|.|.+ + .+.+.++++++++++++. +|.+++...-||..-++.+|.++++++|+.+
T Consensus 136 ~a~g~~~~~~~~~~-~---------~~~~~P~~~~~~~~dd~A------vV~L~~V~y~TGql~dm~aiT~~AH~~galv 199 (407)
T COG3844 136 IAEGLADLLGIGYD-L---------EGVIAPRALEEAITDDVA------VVLLSHVNYKTGQLLDMRAITALAHQHGALV 199 (407)
T ss_pred hhcchhhhhccccc-c---------eeeeChHHHHHhhccceE------EEEeccccccccceeeHHHHHHHHHhcCceE
Confidence 34556777777421 1 236678899999998864 7889999999999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCC-CCccC-
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS-KQVVD- 340 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~- 340 (486)
..|=||+++....+-+. .++|+-++++||+++ +|.+.+++++.++.. ......-.+++.....-. ...+.
T Consensus 200 ~wDLAHsaGavp~~Lh~------~gaDfaigcsyKYLNgGPGapa~l~v~~~h~-e~~~~~lsgW~gha~pf~m~~~y~p 272 (407)
T COG3844 200 GWDLAHSAGAVPVDLHA------AGADFAIGCSYKYLNGGPGAPAGLFVAPRHR-ERSWPPLSGWWGHARPFAMEEVYAP 272 (407)
T ss_pred EeehhcccCCcceeecc------cCCCeeeeeeceeccCCCCCceeEEeccccc-cccccccccccCCCCcchhhhccCc
Confidence 99999998887665433 289999999999999 666677788765532 122222223333211000 00000
Q ss_pred -CCCccccCCCCC--CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC-C--CeEEecCC----CeeEEEEEeec
Q 038818 341 -YKDWQITLSRRF--RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD-N--RFEIVAPR----NFAVVCFRVLP 410 (486)
Q Consensus 341 -~~~~~~~~sr~~--~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~--~~~~~~~~----~~~~v~f~~~~ 410 (486)
.+-..+.|+... +..++-.+|..+..-++.+..++...+++++.+.++.. + ++++..|. ....|+|..+.
T Consensus 273 ~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~ 352 (407)
T COG3844 273 GPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH 352 (407)
T ss_pred CccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc
Confidence 111112222221 22344556666667779999999999999999999764 3 67887653 35678887753
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
..++.+.|.++|++ ..+.....+||.++-.+++-+||=..++.|.++++.+.
T Consensus 353 -----------------~~~V~qaLi~rGVi----gD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 353 -----------------GYQVMQALIDRGVI----GDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred -----------------HHHHHHHHHHcCcc----ccccCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 34677788888974 23455678999999889999999999999999988653
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-15 Score=138.76 Aligned_cols=323 Identities=17% Similarity=0.129 Sum_probs=216.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
..+...+.+++.+.|.+.-|-+..|. ....++++|+|.||-+.+-+..+ |+..-+++.+.+..++.
T Consensus 120 y~Gl~~frqa~A~Fm~~~r~~~v~fd---P~~~Vv~~G~T~ane~l~fcLad-----------pgdafLvPtPyY~gfdr 185 (471)
T KOG0256|consen 120 YHGLPSFRQAVAEFMERARGNRVKFD---PERVVVTNGATSANETLMFCLAD-----------PGDAFLVPTPYYPGFDR 185 (471)
T ss_pred ccCchHHHHHHHHHHHHHhCCCCccC---ccceEEecccchhhHHHHHHhcC-----------CCceeeecCCCCCcccc
Confidence 34456778888888888777554431 13689999999998655544444 78888899888888887
Q ss_pred HHHH-cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceE
Q 038818 188 AAQI-AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWV 263 (486)
Q Consensus 188 a~~~-~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~l 263 (486)
-+++ .|+ +++.|.++...++++++++||+++.+..+.|....-|+++.|+||.|.+-+ +..+...|.++++.+
T Consensus 186 dl~~rTgv---eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHv 262 (471)
T KOG0256|consen 186 DLRWRTGV---EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHV 262 (471)
T ss_pred cceeccCc---eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEE
Confidence 6664 578 999999887777999999999999999999988899999999999999855 666777788999999
Q ss_pred EeeccccchhccCccchhhhcC---CC-CCC--ceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDG---IE-GAD--SFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~---~~-~aD--si~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
++|+.|++.+...++++..+.- .+ ..| -|.++..|=++.|. -.|+++..++.....+-....=++.
T Consensus 263 I~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~v------- 335 (471)
T KOG0256|consen 263 ISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLV------- 335 (471)
T ss_pred EeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCC-------
Confidence 9999999887655555433221 11 223 35778889888664 5899999888765432222110111
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSF-----GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPS 411 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~ 411 (486)
...-.+...+.+ -.+-+++.-+|....-+++.+.|+++ |+..+ +...+++||.--..
T Consensus 336 ----------------Ss~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl-~s~AGlF~wvDlr~ 397 (471)
T KOG0256|consen 336 ----------------SSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCL-KSNAGLFCWVDLRK 397 (471)
T ss_pred ----------------cHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCcee-ecCCeeEEEEEhHH
Confidence 111112222222 23345556666667778899999987 78877 44567777743221
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 412 ASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV---AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
-.+ ....+--..|.+++...-.+.++|+.. ...+|+|+|+. .+.++.++-.++.|+..++.
T Consensus 398 lL~-------s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA--n~~~~t~~~am~Ri~~~~~~ 461 (471)
T KOG0256|consen 398 LLT-------SLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA--NMSEETLEVAMRRLKQFLDS 461 (471)
T ss_pred hcC-------cCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEec--cCCHHHHHHHHHHHHHHHHh
Confidence 110 000111235666666653335565532 34789999995 45665666688888777654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-15 Score=146.04 Aligned_cols=308 Identities=13% Similarity=0.099 Sum_probs=185.6
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+....+. ..|....+..++.+.+.+|+.+..|.+ .+ ...+++|+|+++++..++.+..-.
T Consensus 43 ~~~~~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~-----~~~I~it~G~~~~i~~~~~~l~~~------ 109 (364)
T PRK07865 43 PVIQEALAAAADA--PGYPTTAGTPELREAIVGWLARRRGVTGLD-----PAAVLPVIGSKELVAWLPTLLGLG------ 109 (364)
T ss_pred HHHHHHHHHHHhh--CCCCCccCCHHHHHHHHHHHHHHcCCCCCC-----cccEEEccChHHHHHHHHHHHcCC------
Confidence 3444554443322 245555566788899999999988764 22 127899999998876544433111
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..+|..+..+++.+|+ +++.++. ++++++ . .+.+|+++.++|+||.+
T Consensus 110 ----~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~---------~~~l~~---~------~~~~v~~~~p~NPtG~~ 164 (364)
T PRK07865 110 ----PGDVVVIPELAYPTYEVGARLAGA---TVVRADS---------LTELGP---Q------RPALIWLNSPSNPTGRV 164 (364)
T ss_pred ----CCCEEEECCCCcccHHHHHHhcCC---EEEecCC---------hhhCCc---c------cceEEEEcCCCCCCCcc
Confidence 567788899999999999999999 7776642 222321 1 24467777899999987
Q ss_pred C---CchHHHHHHHHhCceEEeeccccchhccCccchhhhc----CCC-CCCceeeccccccCCC-CcceEEEeeCchHH
Q 038818 247 D---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID----GIE-GADSFSLNAHKWFFTT-LDCCCLWVKNPNAL 317 (486)
Q Consensus 247 d---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~----~~~-~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~ 317 (486)
- .+++|.++|+++|+++++|.+|+....-.+.. ..+. +.. .-..++.++.|.++.| ..+|+++. +++..
T Consensus 165 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~-~~~~~ 242 (364)
T PRK07865 165 LGVDHLRKVVAWARERGAVVASDECYLELGWDAEPV-SILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG-DPALV 242 (364)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCC-ccccccccCCccceEEEEeechhccCCCceeeEEEec-CHHHH
Confidence 4 47788899999999999999997643211110 1010 000 1126677899998644 45676654 44443
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
....... .+... ....+...++.+.+. .+.+++..+...+..+.+.+.|++. ++.+.
T Consensus 243 ~~~~~~~-~~~~~--------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 300 (364)
T PRK07865 243 AELLEVR-KHAGM--------------------MVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-GFRVD 300 (364)
T ss_pred HHHHHHH-HhcCC--------------------CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCccc
Confidence 3221110 00000 011222222333332 2445666777778888899999886 77654
Q ss_pred cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 397 APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 397 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
++..+.+.+.-.+. + ...+.+.+.+.|+.+..+..+. +..++|+++.. ++++++++++.
T Consensus 301 -~~~~~~~~~~~~~~-------------~--~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~~~~~~~~ 361 (364)
T PRK07865 301 -HSEAGLYLWATRGE-------------D--CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA---TDERIAAAVER 361 (364)
T ss_pred -CCCccEEEEEeCCC-------------C--HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC---CHHHHHHHHHH
Confidence 34445443322121 1 1245566777888654443332 35689999953 46799999987
Q ss_pred HH
Q 038818 475 VQ 476 (486)
Q Consensus 475 l~ 476 (486)
|+
T Consensus 362 l~ 363 (364)
T PRK07865 362 LA 363 (364)
T ss_pred hh
Confidence 74
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-15 Score=146.39 Aligned_cols=287 Identities=19% Similarity=0.242 Sum_probs=183.9
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+| +.++.|-|.. .++++++|..|+..++.+... +++.|+++...+....
T Consensus 53 gnPt~~~le----~~la~Le~g~---------~a~~~~SGmaAi~~~l~~ll~-----------~Gd~iv~~~~~Y~~t~ 108 (386)
T PF01053_consen 53 GNPTVRALE----QRLAALEGGE---------DALLFSSGMAAISAALLALLK-----------PGDHIVASDDLYGGTY 108 (386)
T ss_dssp C-HHHHHHH----HHHHHHHT-S---------EEEEESSHHHHHHHHHHHHS------------TTBEEEEESSSSHHHH
T ss_pred ccccHHHHH----HHHHHhhccc---------ceeeccchHHHHHHHHHhhcc-----------cCCceEecCCccCcch
Confidence 344444555 4578887753 468889988888666665533 5566777777665544
Q ss_pred HH----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC-c
Q 038818 187 KA----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS-I 261 (486)
Q Consensus 187 ~a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g-~ 261 (486)
+. ....|+ ++..++. -|+++|++++++++ .+|.+..++|++..+-||++|+++|+++| +
T Consensus 109 ~~~~~~l~~~gv---~v~~~d~-------~d~~~l~~~l~~~t------~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~ 172 (386)
T PF01053_consen 109 RLLEELLPRFGV---EVTFVDP-------TDLEALEAALRPNT------KLVFLESPSNPTLEVPDLEAIAKLAKEHGDI 172 (386)
T ss_dssp HHHHHCHHHTTS---EEEEEST-------TSHHHHHHHHCTTE------EEEEEESSBTTTTB---HHHHHHHHHHTTT-
T ss_pred hhhhhhhcccCc---EEEEeCc-------hhHHHHHhhccccc------eEEEEEcCCCcccccccHHHHHHHHHHhCCc
Confidence 33 445688 7777753 38999999998854 48999999999999999999999999999 9
Q ss_pred eEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 262 WVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
+++||.+++.+....| +.. +||.+..|..|++++.- -+|++.+++...+.+.+.....
T Consensus 173 ~~vVDnT~atp~~~~p-L~~------GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~------------- 232 (386)
T PF01053_consen 173 LVVVDNTFATPYNQNP-LEL------GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRR------------- 232 (386)
T ss_dssp EEEEECTTTHTTTC-G-GGG------T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHH-------------
T ss_pred eEEeeccccceeeecc-CcC------CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhh-------------
Confidence 9999999988754433 222 79999999999998553 2677777763222221111100
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecC----------------CCee
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAP----------------RNFA 402 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~----------------~~~~ 402 (486)
..+-...+..+|..++ |.+.+.-++++..++|..+.+.|+++|.++ |..| ...+
T Consensus 233 -------~~G~~~~p~da~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg 303 (386)
T PF01053_consen 233 -------LLGATLSPFDAWLLLR--GLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGG 303 (386)
T ss_dssp -------HHT-B--HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTS
T ss_pred -------hcCccchHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCc
Confidence 1111234566777776 668889999999999999999999999886 4433 1246
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--cCc-------EEEeeee-----E-------CC--EeEEEEEec
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINA--SGQ-------LYVSHGM-----V-------AG--IYFIRFAVG 459 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~-------~~~~~~~-----~-------~~--~~~lR~~~~ 459 (486)
+++|.+... .+..+++.+.+.- .+. ++..+.. + .| ...+|+|++
T Consensus 304 l~sf~l~~~-------------~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG 370 (386)
T PF01053_consen 304 LLSFELKGG-------------EEAARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG 370 (386)
T ss_dssp EEEEEESSH-------------HHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--
T ss_pred eeEEEeccc-------------hhhhHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec
Confidence 889988753 2344566666521 111 1111111 0 11 358999995
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~ 480 (486)
- ||++.+++.|+++++
T Consensus 371 l-----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 371 L-----EDPDDLIADLEQALE 386 (386)
T ss_dssp S-----S-HHHHHHHHHHHHH
T ss_pred c-----CCHHHHHHHHHHhcC
Confidence 2 378888888887653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=146.82 Aligned_cols=328 Identities=13% Similarity=0.067 Sum_probs=197.6
Q ss_pred HHHHHHHHhhcC-CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceE--EcCCchHHHHHHHHHHHHHHHHH
Q 038818 88 GFLGEMLSSGFN-VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGV--IQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 88 ~~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~--~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
..+.+.+..... .....|....+..++.+.+.+|+.+..+.+-+ ....+ .|.||+.|...++.+.+.. .
T Consensus 50 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~-----~~~v~~~~t~G~~~al~~~~~~l~~~-~-- 121 (404)
T PTZ00376 50 ESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALA-----EKRIATVQALSGTGALRLGFEFLKRF-L-- 121 (404)
T ss_pred hHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccc-----cCeEEEeeccCcchHHHHHHHHHHHh-c--
Confidence 344444433332 22356766667788888888888655432211 01445 4889998876665543221 1
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
.+++.|++.+.++......++.+|+ +++.+|..+++++.+|++.++++++... ....+++.+.++||||
T Consensus 122 -----~~Gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~l~~~~~~~~d~~~l~~~~~~~~---~~~~~~~~~~p~NPTG 190 (404)
T PTZ00376 122 -----PAGTTVYVSNPTWPNHVNIFKSAGL---NVKEYRYYDPKTKGLDFDGMLEDLRTAP---NGSVVLLHACAHNPTG 190 (404)
T ss_pred -----CCCCEEEEcCCCchhHHHHHHHcCC---ceeeccccCcccCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCCC
Confidence 1678899999999999999999999 9999998433357999999999986431 1135677789999999
Q ss_pred cc---CCchHHHHHHHHhCceEEeeccccchhccCc--cchhhhcCC-CCC-C-ceeeccccccC-CCCcceEEE--eeC
Q 038818 245 TV---DPLGPLCDIAKRYSIWVHVDAAYAGSACICP--EFRHFIDGI-EGA-D-SFSLNAHKWFF-TTLDCCCLW--VKN 313 (486)
Q Consensus 245 ~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~--~~~~~~~~~-~~a-D-si~~~~hK~l~-~p~~~g~~~--~~~ 313 (486)
.+ +.+++|+++|++||+|+++|.+|..+..... .... +..+ +.. . .+..++.|.++ ...-+|+++ +.+
T Consensus 191 ~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~-~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~ 269 (404)
T PTZ00376 191 VDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYA-IRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCAN 269 (404)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHH-HHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCC
Confidence 98 4577888899999999999999976443110 1111 1111 111 2 44567899999 456788875 445
Q ss_pred chHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch--------HHHHHHHHHHHHHHHHHHH
Q 038818 314 PNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV--------ANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 314 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~--------~g~~~~~~~~~~~a~~l~~ 385 (486)
++...........+... ...+ ...+...++...+.. +.+++..++..+.++.+.+
T Consensus 270 ~~~~~~l~~~~~~~~~~--------------~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 332 (404)
T PTZ00376 270 KEEAANVLSQLKLIIRP--------------MYSS---PPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYD 332 (404)
T ss_pred HHHHHHHHHHHHHHHhh--------------hcCC---CchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322111000000000 0000 122333344433321 1234455667788888999
Q ss_pred HHhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecCC
Q 038818 386 LVGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGAT 461 (486)
Q Consensus 386 ~L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~~ 461 (486)
.|+++. ++... +|..+.+.|--.+ . .+.++|.++ |+ ++.+. + |++++.
T Consensus 333 ~L~~~~~~~~~~~~-~p~gg~f~~~~~~--------------~----~~~~~L~~~~~v-~v~p~---~----Ris~~~- 384 (404)
T PTZ00376 333 ELKALGSPGDWEHI-INQIGMFSFTGLT--------------K----EQVERLIEKYHI-YLLDN---G----RISVAG- 384 (404)
T ss_pred HHHhcCCCCccccc-ccCceEEEecCCC--------------H----HHHHHHHHhCCE-eecCC---C----eEEEec-
Confidence 998762 23333 3454554442111 2 344555555 65 44332 1 999853
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 038818 462 LTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~ 481 (486)
.+.++++++++.|+++++.
T Consensus 385 -~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 385 -LTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred -cCHHhHHHHHHHHHHHHhc
Confidence 5777999999999988653
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=135.42 Aligned_cols=309 Identities=19% Similarity=0.228 Sum_probs=195.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc----
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH---- 182 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H---- 182 (486)
..|....+|++ ++.|=|- -.++.+++|..|..+|+..... .++.|+.+..-+
T Consensus 60 ~NPT~~vlE~R----iAaLEGG---------~aa~a~aSG~AA~~~ai~~la~-----------aGD~iVss~~LYGGT~ 115 (426)
T COG2873 60 MNPTTDVLEER----IAALEGG---------VAALAVASGQAAITYAILNLAG-----------AGDNIVSSSKLYGGTY 115 (426)
T ss_pred cCchHHHHHHH----HHHhhcc---------hhhhhhccchHHHHHHHHHhcc-----------CCCeeEeeccccCchH
Confidence 57777788876 4544321 1457788888888888776544 455555443322
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
.-+....+.+|+ +++.|..+ |++.++++|+++++ +|.+..-.||.+.+-|+++|+++||++|+.
T Consensus 116 ~lf~~tl~~~Gi---~v~fvd~~-------d~~~~~~aI~~nTk------avf~EtigNP~~~v~Die~ia~iAh~~gvp 179 (426)
T COG2873 116 NLFSHTLKRLGI---EVRFVDPD-------DPENFEAAIDENTK------AVFAETIGNPGLDVLDIEAIAEIAHRHGVP 179 (426)
T ss_pred HHHHHHHHhcCc---EEEEeCCC-------CHHHHHHHhCcccc------eEEEEeccCCCccccCHHHHHHHHHHcCCc
Confidence 225566788999 99998643 79999999999986 799999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCch-HHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPN-ALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||...+..+++-| ..+ +||.|+-|..||+++.. ..|.+++.... .+.. -...|.| ..+.. +.....
T Consensus 180 liVDNT~atpyl~rP-~~h------GADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~-~~rfP~~-~~p~p-~YhGl~ 249 (426)
T COG2873 180 LIVDNTFATPYLCRP-IEH------GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTA-NGRFPEF-TTPDP-SYHGLV 249 (426)
T ss_pred EEEecCCCcceecch-hhc------CCCEEEEeecccccCCccccceEEEeCCcccccc-CCCCccc-CCCCc-ccccee
Confidence 999999988755443 332 89999999999999553 35555554221 1110 0111111 11110 111111
Q ss_pred CCC-cc---------cc----CCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-------
Q 038818 341 YKD-WQ---------IT----LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR------- 399 (486)
Q Consensus 341 ~~~-~~---------~~----~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------- 399 (486)
+.+ ++ .+ .+-...+...|..++ |.|-+.-++++..++|..+.+.|+++|.+..++-|
T Consensus 250 ~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lq--GlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~ 327 (426)
T COG2873 250 YTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQ--GLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPY 327 (426)
T ss_pred hhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHh--chhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcc
Confidence 111 00 00 111223344555544 77888899999999999999999999998876421
Q ss_pred -----------CeeEEEEEeecCCCCCCCCCCccchHHHHH--HHHHHHHhcCc---EEEeeee--E----------C--
Q 038818 400 -----------NFAVVCFRVLPSASGLGDGKANEGANELNR--KLLESINASGQ---LYVSHGM--V----------A-- 449 (486)
Q Consensus 400 -----------~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~g~---~~~~~~~--~----------~-- 449 (486)
...+++|.+.+.. +...++.. +|..++..-|- +++.|.. . .
T Consensus 328 h~la~kyl~~g~g~vltF~~kgg~---------ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv 398 (426)
T COG2873 328 HALAKKYLPKGAGAVLTFGVKGGY---------EAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGV 398 (426)
T ss_pred hhHHHhhccCCCceEEEEEecChH---------HHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCC
Confidence 1457888877531 11111111 22223322222 3444421 1 0
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 450 GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 450 ~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
....+|+|++- ||++.++..|++.++.
T Consensus 399 ~~~~IRlSVGI-----Ed~~DiiaDl~qAl~~ 425 (426)
T COG2873 399 TPDLIRLSVGI-----EDIDDIIADLEQALEA 425 (426)
T ss_pred CCCcEEEEecc-----CCHHHHHHHHHHHHhc
Confidence 25689999952 3788888888886653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-14 Score=141.51 Aligned_cols=293 Identities=14% Similarity=0.071 Sum_probs=178.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
.|....+..++.+++.+|+.+.+|.+ .+ ..+.++|+|++++...++.+..-. +++.|+++..+|
T Consensus 51 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-----~~~I~it~G~~~~i~~~~~~l~~~----------~gd~Vl~~~p~y 115 (357)
T TIGR03539 51 GYPQTWGTPELREAIVDWLERRRGVPGLD-----PTAVLPVIGTKELVAWLPTLLGLG----------PGDTVVIPELAY 115 (357)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCCCC-----cCeEEEccChHHHHHHHHHHHcCC----------CCCEEEECCCCc
Confidence 45544556788899999999887764 22 127889999998876554433111 677888999999
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHh
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRY 259 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~ 259 (486)
..+...++.+|+ +++.++ |++.+.. + .+.+|+++.++|++|.+-+ +++|.++|+++
T Consensus 116 ~~~~~~~~~~g~---~~~~v~---------~~~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~ 174 (357)
T TIGR03539 116 PTYEVGALLAGA---TPVAAD---------DPTELDP---V------GPDLIWLNSPGNPTGRVLSVDELRAIVAWARER 174 (357)
T ss_pred HHHHHHHHhcCC---EEeccC---------ChhhcCc---c------CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHc
Confidence 999888899888 776653 2222221 1 2346778889999998755 67899999999
Q ss_pred CceEEeeccccchhccCccchhhhcC-----CCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 260 SIWVHVDAAYAGSACICPEFRHFIDG-----IEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 260 g~~lhvD~a~g~~~~~~~~~~~~~~~-----~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
|+++++|++|+.+.. .+.....+.. ...-..+..+..|.++.| .-+|.++. +++.......... +.
T Consensus 175 ~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~-~~~~~~~~~~~~~-~~----- 246 (357)
T TIGR03539 175 GAVVASDECYLELGW-EGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG-DPALVAELLTVRK-HA----- 246 (357)
T ss_pred CeEEEEecchhhhcc-CCCCccceecccCCCccccEEEEeccccccCCCceeEEEEec-CHHHHHHHHHHHh-hc-----
Confidence 999999999965332 1111111110 001125566899998644 34677664 3443332211100 00
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCC
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSA 412 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~ 412 (486)
+.....+...++...+- ...+++..++..+.++++.+.|++. ++.+. +|..+++.+...+..
T Consensus 247 ---------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~-~p~~~~~~~~~~~~~ 309 (357)
T TIGR03539 247 ---------------GLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-GFRID-HSEAGLYLWATRGED 309 (357)
T ss_pred ---------------ccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCc-CCCccEEEEEECCCC
Confidence 00012222233333332 2445556666777888898999886 67654 455566555443211
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
...+.+++.+.|+.+..+..+ .+..++|+++.+ +++++++.++.|
T Consensus 310 ---------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~---~~~~i~~~~~~l 356 (357)
T TIGR03539 310 ---------------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA---TDERIAAAVARL 356 (357)
T ss_pred ---------------HHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC---CHHHHHHHHHhh
Confidence 234666777788754433322 235799999954 467898888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-14 Score=140.90 Aligned_cols=282 Identities=16% Similarity=0.074 Sum_probs=179.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.++++++ +.++|+|+++++..++.+..+ +++.|++...++......++..|.
T Consensus 69 ~lr~~ia~~~~~~~~-------~I~it~G~~~al~~~~~~~~~-----------~gd~V~v~~P~y~~~~~~~~~~g~-- 128 (357)
T PRK14809 69 DLTAALADRWDVSPE-------QVWLANGGDGALDYLARAMLD-----------PGDTVLVPDPGFAYYGMSARYHHG-- 128 (357)
T ss_pred HHHHHHHHHhCCCcc-------eEEECCCHHHHHHHHHHHhcC-----------CCCEEEEeCCChHHHHHHHHHcCC--
Confidence 344556666677665 789999999988766655433 667788888888777778888898
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~~ 274 (486)
.++.+|++.++++.+|++++++.+. . +.+|+++.++||||.+-+.+++.++++.. ++++++|++|+.+..
T Consensus 129 -~~~~~~l~~~~~~~~~~~~~~~~~~-~------~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~ 200 (357)
T PRK14809 129 -EVREYPVSKADDFEQTADTVLDAYD-G------ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAE 200 (357)
T ss_pred -eEEEEecccCcCCCcCHHHHHHhhc-C------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccC
Confidence 8999998754457888888776542 1 23677789999999998887777777654 789999999976432
Q ss_pred cCccchhhhcCCCCC-C-ceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 275 ICPEFRHFIDGIEGA-D-SFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 275 ~~~~~~~~~~~~~~a-D-si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
.+..... ++.. . .+..++.|.++ ....+|+++..++ .+........++ .
T Consensus 201 -~~~~~~~---~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~-~~~~~~~~~~~~-----------------------~ 252 (357)
T PRK14809 201 -RPSAVAL---VEERDDVAVLRTFSKAYGLAGLRLGYAVVPEE-WADAYARVNTPF-----------------------A 252 (357)
T ss_pred -CchhHHH---HhhCCCEEEEecchhHhcCcchhheeeecCHH-HHHHHHHhCCCC-----------------------C
Confidence 1111111 1111 2 34557899997 4567888887543 333221111100 1
Q ss_pred CCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+..++++..+. .+.+++..+...+..+.+.+.|... . + ++..+.+.+++. . ..+
T Consensus 253 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-~---~-~~~g~f~~~~~~-~----------------~~~ 310 (357)
T PRK14809 253 ASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP-T---W-ESAGNFVLAEVG-D----------------ASA 310 (357)
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc-c---C-CCCCCEEEEECC-C----------------HHH
Confidence 12333444444443 3445566666666777777777543 1 2 344455555442 1 134
Q ss_pred HHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.+.++|+.+..+..+...+++|+++. +.++++++++.|+++++
T Consensus 311 ~~~~l~~~gv~v~~g~~f~~~~~iRls~~----~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 311 VAEAAQERGVIVRDCTSFGLPECIRITCG----TREETERAVEVLNEVLA 356 (357)
T ss_pred HHHHHHHCCEEEEECccCCCCCeEEEecC----CHHHHHHHHHHHHHHhc
Confidence 56667677875554444433568999974 35699999999988754
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=145.39 Aligned_cols=342 Identities=14% Similarity=0.085 Sum_probs=214.3
Q ss_pred CCCCCcceecCCC-CCHHHHHHHHHHhh-cCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 71 WQSPYYFAYFPSS-GSIAGFLGEMLSSG-FNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 71 ~~~p~~~~~~~~~-~~~~~~~~~~l~~~-~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
..+=+|+||-.+. +-.+.+ .+.+..+ ++......+. +..++.+++.+.+|+++|.++. .+|..| -.
T Consensus 141 lgSYNYLGFa~~~g~ca~~~-~~~~~kygl~~css~~e~--G~~~~hkelE~l~A~f~g~e~a--------~vF~mG-f~ 208 (519)
T KOG1357|consen 141 LGSYNYLGFAQSVGPCAEAS-LKSFDKYGLSRCSSRHEA--GTTEEHKELEELVARFLGVEDA--------IVFSMG-FA 208 (519)
T ss_pred ecccccccccccCCcCChHH-HHHHHHhcccccccchhc--ccHHHHHHHHHHHHHhcCCcce--------EEEecc-cc
Confidence 3555788887543 333333 3333322 2222222222 2456777788899999999874 233322 22
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
.|-+.+-.... ++..|+-.+..|.|+...|++.|. .++....+ |+.+||+.|++....|
T Consensus 209 TNs~~~p~l~~-----------~gsLIiSDelNHaSi~~GaRLSgA---tiRVfkHN-------dm~~LEr~Lrd~I~~g 267 (519)
T KOG1357|consen 209 TNSMNIPSLLG-----------KGSLIISDELNHASLITGARLSGA---TTRVFRHN-------DMQGLERLLRDAIVYG 267 (519)
T ss_pred ccccCcceeec-----------CCcceeeccccchheeccccccCc---eEEEEecC-------CHHHHHHHHHHHHhcC
Confidence 22111111111 667788888899999999999999 88888754 8999999999987665
Q ss_pred C-------ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC-----ccchhhhcCCCCCCceeecc
Q 038818 229 L-------IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC-----PEFRHFIDGIEGADSFSLNA 296 (486)
Q Consensus 229 ~-------~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~-----~~~~~~~~~~~~aDsi~~~~ 296 (486)
. ..++|++..-.++-|.++++.++.+++|+|.++|++|+||..+++.. .++.. .+-+.+|.+...+
T Consensus 268 qP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g--~d~~dvDImMGtf 345 (519)
T KOG1357|consen 268 QPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFG--VDPEDVDIMMGTF 345 (519)
T ss_pred CCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccC--CCchhheeeccee
Confidence 3 23566777778899999999999999999999999999998776522 11110 1124688888888
Q ss_pred ccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh----chHHHHHH
Q 038818 297 HKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF----GVANLRNF 372 (486)
Q Consensus 297 hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~----g~~g~~~~ 372 (486)
.|.+++ +|..+...+.. .+.....+++..-.. ..+ +..+-....+++.+ |.+.-++.
T Consensus 346 tKSfga---~GGyiagsk~l-id~lrt~s~~~~yat--------------~~s-ppvaqq~~ssl~~i~G~dgt~~g~~k 406 (519)
T KOG1357|consen 346 TKSFGA---AGGYIAGSKEL-IDYLRTPSPSALYAT--------------SLS-PPVAQQILTSVKHIMGEDGTNRGRQK 406 (519)
T ss_pred hhhccc---ccceecCcHHH-HhhhccCCCceeecc--------------cCC-hHHHHHHHHHHHhhcCCCcccHHHHH
Confidence 998875 34444333333 233332222221100 001 11122223344442 34567888
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee---EC
Q 038818 373 LRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM---VA 449 (486)
Q Consensus 373 ~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~ 449 (486)
+++..+++++++..|++. +|.+.+..+++++..-+.++. ....+.+.|.+.+..++.... .-
T Consensus 407 ~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~--------------k~~~f~r~~l~~nigvVvvgfPatpl 471 (519)
T KOG1357|consen 407 IERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPA--------------KIVAFSREMLERNIGVVVVGFPATPL 471 (519)
T ss_pred HHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCcc--------------cccHHHHHHHhcCceEEEEeCCCchH
Confidence 999999999999999987 899998888888777666542 122344455555553332211 11
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 450 GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 450 ~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
=....|+|.. -+.+.|++|++++.+.++.+..
T Consensus 472 ~e~r~R~c~S-a~ht~e~ld~~l~~i~~~g~~~ 503 (519)
T KOG1357|consen 472 LESRARFCLS-ASHTKEDLDRALEVIDRVGDED 503 (519)
T ss_pred HHhHHHhhhc-ccccHHHHHHHHHHHhhhchhh
Confidence 1345789885 4566679999999999987543
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-13 Score=141.65 Aligned_cols=309 Identities=10% Similarity=0.033 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+.|++++|++ ..+++++|++||..|+..+|.+.....+.......+|......|-...-+....
T Consensus 117 ~~~~~la~~L~~~~~~~---------~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~ 187 (474)
T PLN02624 117 DKFPEFAEYLTSMFGYD---------MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMS 187 (474)
T ss_pred HHHHHHHHHHHhhcCCC---------eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcC
Confidence 44445666777777653 468899999999999999987532221111011234444444453322233322
Q ss_pred CCC---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHh
Q 038818 193 GID---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRY 259 (486)
Q Consensus 193 G~g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~ 259 (486)
+-. ...+..+|. -|++.|++.++. .+....+|++....+++|.+-| +++|.++|++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~ 257 (474)
T PLN02624 188 CDNEATRGFGPLLPGHLKVDF-------GDLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKH 257 (474)
T ss_pred CCccccccCCCCCCCceEeCC-------CCHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 210 012233332 278999998863 2234567888888999999877 99999999999
Q ss_pred CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 260 SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 260 g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
|+++++|++|.|+......+.....++ ..|.+++ .|.++++ ..+|.++.+++ ... .+. +....
T Consensus 258 gillI~DEv~tG~GrtG~~~a~~~~~i-~pDiv~l--sK~lggG~~pigav~~~~~-i~~-~~~--~~~~~--------- 321 (474)
T PLN02624 258 NVLMIADEIQTGLARTGKMLACDWEEV-RPDVVIL--GKALGGGVIPVSAVLADKD-VML-CIK--PGEHG--------- 321 (474)
T ss_pred CCEEEEeccccCcCcCcchhhHHhcCC-CCCEEEe--cccccCCCCcceeeeecHH-HHh-Hhc--cCCcC---------
Confidence 999999999976321111111111233 4687886 4988866 46888877543 222 221 10000
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCC-eEEecCCCeeEEEEEeecCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNR-FEIVAPRNFAVVCFRVLPSAS 413 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~-~~~~~~~~~~~v~f~~~~~~~ 413 (486)
.++ ++.+....++.+++..+-.+ ++.++..++.++|++.|++ .+. +.-+ .+...++.+.+..+.
T Consensus 322 -----~T~-~g~pl~~aaa~aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~v-rg~G~~~~i~l~~~~- 390 (474)
T PLN02624 322 -----STF-GGNPLASAVAMAALQVVQDE---KLAERSAKLGQELRDQLQKIQKQFPKLIKEV-RGRGLLNAVVLNSPK- 390 (474)
T ss_pred -----CCC-CCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-EeeEEEEEEEecCCC-
Confidence 011 11111122223333333222 3444556666777666654 332 2212 123344454443211
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
. ......++.+.|.+.|+++ .+. +..++|++. +...+++||+++++.|+++++.
T Consensus 391 -------~--~~~~a~~~~~~L~e~GV~v-~p~---~~~~lR~~p-~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 391 -------L--GPVSAYDVCLKLKERGLLA-KPT---HDTIIRLAP-PLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred -------c--ChHHHHHHHHHHHhCCeEE-ecC---CCCEEEEEC-CccCCHHHHHHHHHHHHHHHHH
Confidence 0 0123456777788888753 332 356899997 4578889999999999988754
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-14 Score=145.50 Aligned_cols=342 Identities=15% Similarity=0.072 Sum_probs=190.2
Q ss_pred HHHHHHHHHhhcCCC-----ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV-----GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQI 161 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~-----~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~ 161 (486)
...+.+.+...++.. ...|....+..++.+.+.+|+.+..|.+.+ ..++++|+|+++++..++.+....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~-----~~~I~it~Ga~~al~~~~~~l~~~- 120 (416)
T PRK09440 47 EDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNIS-----PQNIALTNGSQSAFFYLFNLFAGR- 120 (416)
T ss_pred HHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC-----hhhEEEccChHHHHHHHHHHHhcc-
Confidence 455666666555432 134554455678999999999988776432 127899999998886666554321
Q ss_pred HHHccccCCCCeEEEe-cCCCchHHHHHHHHcCCC-CCCeEEEecCCCC-CcccCHHHHHHHHHHHHHCCCccEEEEeec
Q 038818 162 LNEIGRENISRLVVYG-SDQTHSALQKAAQIAGID-PKNFRAIKTTKSS-SFTLTPESLQAAIDLDIQAGLIPLFLCATV 238 (486)
Q Consensus 162 ~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~~~G~g-~~~v~~v~~d~~~-~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~ 238 (486)
+.+ .+++.|++ ...+++.....+...|.- ...+..++++.++ .+.+|+++|+ +.+ .+.+++++.
T Consensus 121 ----~~~-~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~------~~~~i~l~~ 187 (416)
T PRK09440 121 ----RAD-GSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE------DTGAICVSR 187 (416)
T ss_pred ----ccC-CCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC------CceEEEEec
Confidence 000 03456666 467777666655433320 0022334443321 3679999997 221 235788889
Q ss_pred CCccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 239 GTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 239 gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
++||||.+-+ +++|+++|++|++|+++|.+|+-... ...+.........--.+..++.|++....-+|+++.. +.
T Consensus 188 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~-~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~-~~ 265 (416)
T PRK09440 188 PTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFP-GIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIAD-EE 265 (416)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCC-CcchhhcCccccCCeEEEecccccCCCcceEEEEeCC-HH
Confidence 9999999955 78888899999999999999963211 0001110000011113456789975555668877653 33
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHH-----HHHHHHHHHHHHHHHHhCC
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRN-----FLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~-----~~~~~~~~a~~l~~~L~~~ 390 (486)
... .+.....+. +.....+...++.+.+....+.+ +.+...+..+.+.+.|.+.
T Consensus 266 l~~-~~~~~~~~~--------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~ 324 (416)
T PRK09440 266 IIE-ALSNMNGII--------------------SLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRY 324 (416)
T ss_pred HHH-HHHHHHHHh--------------------ccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 221110000 00113334444444442222222 2233344455555665442
Q ss_pred -C--CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-C--------EeEEEEEe
Q 038818 391 -N--RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-G--------IYFIRFAV 458 (486)
Q Consensus 391 -~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~--------~~~lR~~~ 458 (486)
+ ++++..+.....+.+.+.+... + ..++.+.+.++|+.+..+..+. + ..++|+++
T Consensus 325 l~~~~~~~~~p~gg~fiw~~~~~~~~-----------~--~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~ 391 (416)
T PRK09440 325 LPDEPCLIHKPEGAIFLWLWFKDLPI-----------T--TEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNY 391 (416)
T ss_pred cccCCeEEecCCCceEEEEECCCCCC-----------C--HHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEe
Confidence 2 3554433333444444432110 1 2345666667787654443331 1 25899999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 038818 459 GATLTEDRHVIAAWKVVQEKLDGILATS 486 (486)
Q Consensus 459 ~~~~tt~~did~~i~~l~~~~~~l~~~~ 486 (486)
.. ++++++++++.|.++++++.++|
T Consensus 392 ~~---~~~~l~~~i~~l~~~~~~~~~~~ 416 (416)
T PRK09440 392 VQ---DDEEIEKGIAILAEEVEKAYAES 416 (416)
T ss_pred cC---CHHHHHHHHHHHHHHHHHHhhcC
Confidence 52 57799999999999998887765
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-14 Score=144.31 Aligned_cols=324 Identities=13% Similarity=0.055 Sum_probs=196.9
Q ss_pred HHHHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCC--CCCCccCCCcce--EEcCCchHHHHHHHHHHHHHHH
Q 038818 88 GFLGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKL--PKSFLFSGTGGG--VIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 88 ~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~--~~~~~~~~~~~~--~~t~ggt~a~~~al~~a~~~~~ 162 (486)
..+.+.+...... ....|....+..++.+.+.+|+.+..+. +++ .. ++|+|+++|+..++.+....
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~-------~i~v~iT~Ga~~al~~~~~~l~~~-- 117 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAG-------RVATVQTPGGTGALRVGADFLKRA-- 117 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccC-------eEEEEecCCccHHHHHHHHHHHHh--
Confidence 4566666665533 2335766667788888888888765442 222 34 89999999987776543210
Q ss_pred HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc
Q 038818 163 NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA 242 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~ 242 (486)
.+++.|++.+.++.....+++.+|+ +++.+|....+++.+|+++|+++++... ....+++.+.++||
T Consensus 118 -------~pGd~Vlv~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~l~~~~~~~~---~~~~~~i~~~p~NP 184 (396)
T PRK09257 118 -------FPDAKVWVSDPTWPNHRAIFEAAGL---EVKTYPYYDAATKGLDFDAMLADLSQAP---AGDVVLLHGCCHNP 184 (396)
T ss_pred -------CCCCeEEECCCCcccHHHHHHHcCC---cEEEEeccccccCccCHHHHHHHHHhCC---CCCEEEEeCCCCCC
Confidence 0678899999999999999999999 9999998322247899999999887421 11246677889999
Q ss_pred ccccC---CchHHHHHHHHhCceEEeeccccchhccCc-cchhh--hcCCCCCCceeeccccccCC-CCcceEEEe--eC
Q 038818 243 ITTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICP-EFRHF--IDGIEGADSFSLNAHKWFFT-TLDCCCLWV--KN 313 (486)
Q Consensus 243 ~G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~-~~~~~--~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~--~~ 313 (486)
||.+- .+++|+++|++||+|+++|.+|........ ..... +.+...--.+..++.|.++. ..-+|++++ .+
T Consensus 185 TG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~ 264 (396)
T PRK09257 185 TGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAED 264 (396)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCC
Confidence 99984 478889999999999999999976432101 11111 11111111456779999985 677898874 33
Q ss_pred chHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHH
Q 038818 314 PNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 314 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~ 385 (486)
+..+.+............ ..+ ...+...++.+.+. .+.++++.++..+..+.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~ 327 (396)
T PRK09257 265 AEEADRVLSQLKATIRTN--------------YSN---PPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVE 327 (396)
T ss_pred HHHHHHHHHHHHHHhhhh--------------cCC---CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332211111000000000 000 01111122222221 23345566777888888999
Q ss_pred HHhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCC
Q 038818 386 LVGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATL 462 (486)
Q Consensus 386 ~L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~ 462 (486)
.|++.. ++++. .|..+.+.|--.+ .+ .+.+.+.+.|+. +.+. .|+++.+
T Consensus 328 ~L~~~~~~~~~~~~-~p~gg~~~w~~l~--------------~~---~~~~l~~~~~V~-~~p~-------~ri~~~~-- 379 (396)
T PRK09257 328 ALKAKGPSRDFDFI-ARQRGMFSYSGLT--------------PE---QVDRLREEFGVY-AVGS-------GRINVAG-- 379 (396)
T ss_pred HHHhcCCCCCcccc-cccceEEEecCCC--------------HH---HHHHHHHcCCEE-EcCC-------CeEEEee--
Confidence 998762 25543 4555555442111 12 223333455664 3331 1999853
Q ss_pred CcHHHHHHHHHHHHHH
Q 038818 463 TEDRHVIAAWKVVQEK 478 (486)
Q Consensus 463 tt~~did~~i~~l~~~ 478 (486)
.++++|+++++.|+++
T Consensus 380 ~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 380 LNESNIDYVAEAIAAV 395 (396)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5777999999999875
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-14 Score=139.22 Aligned_cols=287 Identities=11% Similarity=0.027 Sum_probs=175.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++.++++++ +.++|+|+++++..++.+. . ++..|++...++..+...++.+|+
T Consensus 61 ~Lr~aia~~~~v~~~-------~I~it~G~~~~i~~~~~~l-~-----------~g~~vlv~~P~y~~~~~~~~~~g~-- 119 (360)
T PRK07392 61 ELRLALAQHHQLPPE-------WILPGNGAAELLTWAGREL-A-----------QLRAVYLITPAFGDYRRALRAFGA-- 119 (360)
T ss_pred HHHHHHHHHhCcChh-------hEEECCCHHHHHHHHHHHh-C-----------CCCeEEEECCCcHHHHHHHHHcCC--
Confidence 344555666677765 7899999988876555432 1 334677888999999999999999
Q ss_pred CCeEEEecCCCCCc---ccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchh
Q 038818 197 KNFRAIKTTKSSSF---TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 197 ~~v~~v~~d~~~~~---~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+++.+|.+.++.+ ..+++.+++... .+.+++++.++||||.+-+.++|.++++++++ +++|.+|..+.
T Consensus 120 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~ 190 (360)
T PRK07392 120 -TVKELPLPLDQPSPGLTLRLQTLPPQLT-------PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFL 190 (360)
T ss_pred -eEEEEecccccCCcccccCHHHHHHhcc-------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhc
Confidence 9999999754322 245555544321 23578888999999999999999999999985 66799997654
Q ss_pred ccCccchhhhcCCCCC-C-ceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 274 CICPEFRHFIDGIEGA-D-SFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~a-D-si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
... .....+..+... . .+..++.|.++ ...-+|+++..++ .+.+.......+
T Consensus 191 ~~~-~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~-~~~~~~~~~~~~----------------------- 245 (360)
T PRK07392 191 PPD-AEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPD-RLQRWQQWRDPW----------------------- 245 (360)
T ss_pred cCc-cccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHH-HHHHHHhhCCCC-----------------------
Confidence 211 111111111111 1 44567899998 5567898887543 333211111000
Q ss_pred CCCchHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 351 RFRALKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
....+..+++...+.... .+...+...+.++++.+.|++++++.+. ++..+.+.+++... ..
T Consensus 246 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~~----------------~~ 308 (360)
T PRK07392 246 PVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQGS----------------AL 308 (360)
T ss_pred CCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCCC----------------HH
Confidence 112334444444443322 3334455667788899999888888765 33434333333211 23
Q ss_pred HHHHHH-HhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 430 KLLESI-NASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 430 ~l~~~l-~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
++.+++ .+.|+.+..+..+. +.+++|+++.. .++.+++.++|+++.
T Consensus 309 ~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~----~~~~~~l~~al~~~~ 357 (360)
T PRK07392 309 QLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT----EAENQRLLEALAAIL 357 (360)
T ss_pred HHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC----HHHHHHHHHHHHHHh
Confidence 456554 35677555444333 35799999853 335567777766654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-14 Score=142.07 Aligned_cols=291 Identities=13% Similarity=0.085 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
..+++.++.+++++..+.+ ..+++++|++||..|+..++... + ++.+|......|-+...+..
T Consensus 69 ~~~~~~~la~~l~~~~~~~---------~~~~~~sG~~a~~~A~~~a~~~~-------g-~~~vi~~~~~~Hg~~~~~~~ 131 (377)
T PRK02936 69 TNSLQEEVASLLAENSAGD---------LVFFCNSGAEANEAALKLARKHT-------G-KSKIVTFEQSFHGRTFGTMS 131 (377)
T ss_pred CCHHHHHHHHHHHhcCCCC---------EEEEeCCcHHHHHHHHHHHHHhc-------C-CCeEEEECCCcCCCcHHhhh
Confidence 3567777888888876542 47899999999999999887531 0 23455555667766555554
Q ss_pred HcCCCC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC----CchHHHHHHH
Q 038818 191 IAGIDP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD----PLGPLCDIAK 257 (486)
Q Consensus 191 ~~G~g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id----pl~~I~~i~~ 257 (486)
..|... ..+..+|. -|+++|++.+.+. +.+|++....++.|.+. ++++|.++|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~ 198 (377)
T PRK02936 132 ATGQEKIKEGFGPLLPGFTHVPF-------NDIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCK 198 (377)
T ss_pred ccCCccccccCCCCCCCceEeCC-------CCHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHH
Confidence 443210 01222222 1789999888643 34677777777777663 3999999999
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
+||+++++|++|.++......+.....++ ..|.+ ...|.++....+|+++.++ .. .+.+... ...
T Consensus 199 ~~~~~lI~DEv~~g~g~~g~~~~~~~~~~-~~di~--t~sK~l~~G~~ig~v~~~~-~~-~~~~~~~---~~~------- 263 (377)
T PRK02936 199 KFGALLIIDEVQTGIGRTGTLFAYEQFGL-DPDIV--TVAKGLGNGIPVGAMIGKK-EL-GTAFGPG---SHG------- 263 (377)
T ss_pred HcCCEEEEeccccCCCcCchhhHHHhhCC-CCcEE--EEcccccCCCccEEEEEcH-HH-HhhccCC---CCC-------
Confidence 99999999999976322111111001122 34654 4689998656688777653 22 2222110 000
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEEeecCCC
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFRVLPSAS 413 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~~~~~~~ 413 (486)
.+. ....+.+.+++..+..-..++..++..++.+++++.|++ ++.+..+. +...++.+.+..
T Consensus 264 ------~t~----~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~--- 329 (377)
T PRK02936 264 ------STF----GGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIR-GKGLMIGIECTE--- 329 (377)
T ss_pred ------CCC----CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe-ecceEEEEEecc---
Confidence 011 112333333333331111124455666666666666654 33322221 233445555432
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
. ...+.+.+.++|+++.. .+..++|+++ +...++++|+++++.|+++
T Consensus 330 -----------~--~~~~~~~l~~~gv~v~~----~g~~~lRi~p-~~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 330 -----------E--VAPVIEQLREEGLLVLS----AGPNVIRLLP-PLVVTKEELDQAVYLLKKV 376 (377)
T ss_pred -----------h--HHHHHHHHHHCCeEEec----CCCCEEEEEC-CcccCHHHHHHHHHHHHHh
Confidence 1 34567777788875433 2346899997 3456788999999999875
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-14 Score=145.71 Aligned_cols=368 Identities=13% Similarity=0.107 Sum_probs=202.4
Q ss_pred CHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHH-HHHHHcCC--CCCCccCCCcceEEcCCchHHHHHHHHHHHHHH
Q 038818 85 SIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD-WLGEMLKL--PKSFLFSGTGGGVIQGTTCEAILCTLAAARDQI 161 (486)
Q Consensus 85 ~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~-~l~~l~g~--~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~ 161 (486)
.++..+.++..+..+ ..|...++..++.+++.+ ++.+.++. +.. +...+++|+|+++|+..++.+.....
T Consensus 113 ~~~~~v~e~~~~~~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~----~~~~I~vT~Ga~~al~~~~~aL~~~~ 185 (527)
T PRK09275 113 DADEFVYELVDGIIG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPK----GEFDLFAVEGGTAAMCYIFDSLKENG 185 (527)
T ss_pred CCCHHHHHHHHHHhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCC----CcCeEEEeCCHHHHHHHHHHHHhhhh
Confidence 446667776555543 247766777777777777 44443332 111 01268999999999888776532211
Q ss_pred HHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCc
Q 038818 162 LNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTT 241 (486)
Q Consensus 162 ~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt 241 (486)
+- .+++.|++..+.+......+++.|.+. .++.++.+++++|.+|+++|++++++.+ .+|+++.++|
T Consensus 186 ll------~pGD~Vlv~~P~y~~Y~~~~~l~g~~~-~~v~v~~~~~~~f~~d~~~l~~~~~~~t------kai~l~nP~N 252 (527)
T PRK09275 186 LL------KAGDKIALMTPIFTPYLEIPELPRYDL-EVVHINADEENEWQYPDSELEKLRDPSI------KALFLVNPSN 252 (527)
T ss_pred cC------CCCCEEEEeCCChHHHHHHHHHcCCCe-EEEEeecCcccCCCCCHHHHHhhcCCCC------CEEEEeCCcC
Confidence 11 167788889899999988888887622 4455555544468999999999776433 3788889999
Q ss_pred cccccCC---chHHHHHHHH--hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCch
Q 038818 242 AITTVDP---LGPLCDIAKR--YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPN 315 (486)
Q Consensus 242 ~~G~idp---l~~I~~i~~~--~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~ 315 (486)
|||.+-+ +++|+++|++ +++|+++|.+|+.+.. .+...+.....--.+..++.|.++ +..-.|+++..++.
T Consensus 253 PTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~ 329 (527)
T PRK09275 253 PPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHEDN 329 (527)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCchh
Confidence 9999966 7888888965 4999999999976432 222222111112244566899997 44568888776653
Q ss_pred HHHHHhcCCc--------ccccCccCCCCCccCCCCc--------cccCCCCCCchHHHH-----HHHHh--chHHHHHH
Q 038818 316 ALIKALSTNP--------EFLRNKASDSKQVVDYKDW--------QITLSRRFRALKLWL-----VLRSF--GVANLRNF 372 (486)
Q Consensus 316 ~~~~~~~~~~--------~y~~~~~~~~~~~~~~~~~--------~~~~sr~~~~l~~~~-----~l~~~--g~~g~~~~ 372 (486)
.+.+....-+ .++..-.. ......+.+. ....+-.......++ ....+ +.+..+++
T Consensus 330 v~~~~i~~l~~~~~~~~~~ry~~~~~-~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~~ 408 (527)
T PRK09275 330 VFDKLIAKLPEEKKKELDKRYSSLTT-DPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKKAM 408 (527)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhccC-CcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 2221111000 00000000 0000000000 000000111111121 12222 23445666
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEe-cCCCeeEEEEE-eecCCCCCCCCCCccc---hHHHHHHHHHHHH-hcCcEEEeee
Q 038818 373 LRSHVRMAQLFQELVGGDNRFEIV-APRNFAVVCFR-VLPSASGLGDGKANEG---ANELNRKLLESIN-ASGQLYVSHG 446 (486)
Q Consensus 373 ~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~v~f~-~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~-~~g~~~~~~~ 446 (486)
.+.+.+..+.+.+.|. +.+. .+|.....+|- +....... .+.+... ......++..+|. +.|++++++.
T Consensus 409 ~~~~~~Rr~~l~~~Lg----~~~~~~~p~g~fY~~~di~~~~~~~-~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~ 483 (527)
T PRK09275 409 KDIIRRRYKALYEGLG----LPEPEDPNNAAYYTLIDLEEWAEKN-YGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGG 483 (527)
T ss_pred HHHHHHHHHHHHHHcC----CCCcCCCCCeeEEEEEEhHHhhhhc-cCchhhhhhhccCCHHHHHHHHHhcCCEEEeCch
Confidence 6677777777777772 2222 24555555542 22100000 0000000 0000234444554 4577666665
Q ss_pred eEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 447 MVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 447 ~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+. +..++|+|+.+ .+++++.++.+.|++++++..
T Consensus 484 ~Fg~~~~~vRis~a~--~~~~~~~~~~~rl~~~l~~y~ 519 (527)
T PRK09275 484 GFGGPEWSVRVSLAN--LNEEDYAKIGKAIRKLLDEYY 519 (527)
T ss_pred hhCCCCCeEEEEEec--CCHHHHHHHHHHHHHHHHHHH
Confidence 554 35689999964 477799999999998887654
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-14 Score=140.51 Aligned_cols=316 Identities=11% Similarity=0.072 Sum_probs=187.3
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHH-HHHHHcc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARD-QILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~-~~~~~~~ 166 (486)
..+.+.+...... ...|....+..++.+.+.+|+++.+|.+.. ..++++|+|+++++...+.+... .
T Consensus 40 ~~~~~a~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~-----~~~I~it~G~~~al~~~~~~~~~~~------ 107 (374)
T PRK05839 40 KFIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELK-----ENELIPTFGTREVLFNFPQFVLFDK------ 107 (374)
T ss_pred HHHHHHHHHHhhc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----cceEEEecCcHHHHHHHHHHHhcCC------
Confidence 4455555544322 334544445568888899999998885322 12789999988887655454321 1
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
++..|+++..++..+...++..|+ +++.+|.++++.+.+|+++.+ ++ . +.+|+++.++||||.+
T Consensus 108 ----~gd~vlv~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~d~~~~~--~~-~------~k~v~i~nP~NPTG~~ 171 (374)
T PRK05839 108 ----QNPTIAYPNPFYQIYEGAAIASRA---KVLLMPLTKENDFTPSLNEKE--LQ-E------VDLVILNSPNNPTGRT 171 (374)
T ss_pred ----CCCEEEECCCCchhhHHHHHhcCC---EEEEeecccccCCcCCcchhh--hc-c------ccEEEEeCCCCCcCcc
Confidence 466788888999999999999999 999999976555677765442 22 1 3467778999999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhc-----CCCC-CC-ceeeccccccC-CCCcceEEEeeCch
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID-----GIEG-AD-SFSLNAHKWFF-TTLDCCCLWVKNPN 315 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~-----~~~~-aD-si~~~~hK~l~-~p~~~g~~~~~~~~ 315 (486)
-+ +++|+++|+++|+++++|.+|+.... .+....... +... -. .+..++.|.++ ...-+|+++.. +.
T Consensus 172 ~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~-~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~-~~ 249 (374)
T PRK05839 172 LSLEELIEWVKLALKHDFILINDECYSEIYE-NTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGD-AS 249 (374)
T ss_pred cCHHHHHHHHHHHHHcCCEEEeccchhhccc-CCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecC-HH
Confidence 54 67888889999999999999976421 111111111 0001 12 44567899754 55678888764 33
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFE 394 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 394 (486)
... .+.....+... + ...+...++...+ ..+.+++..++..++.+.+.+.|. +.
T Consensus 250 ~~~-~~~~~~~~~~~-----------------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~~ 304 (374)
T PRK05839 250 ILK-KYKAYRTYLGC-----------------A---SPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREILG----IT 304 (374)
T ss_pred HHH-HHHHHHhhcCC-----------------C---CChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcC----CC
Confidence 332 22111011100 0 0111112222122 234455566666666666666552 22
Q ss_pred EecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC----CEeEEEEEecCCCCcHHHHH
Q 038818 395 IVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA----GIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 395 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~----~~~~lR~~~~~~~tt~~did 469 (486)
.++....+.+++.+ ..++.+++.+ .|+.+..+..+. +.+++|+++. . +++++.
T Consensus 305 --~p~gg~fi~~~~~~-----------------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~-~~~~~~ 362 (374)
T PRK05839 305 --IPPATFYVWLPVDN-----------------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--Y-DTPKLE 362 (374)
T ss_pred --CCCeeEEEEEeCCC-----------------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--C-CHHHHH
Confidence 23333334444431 1245556654 787554433222 2479999994 2 477999
Q ss_pred HHHHHHHHHHH
Q 038818 470 AAWKVVQEKLD 480 (486)
Q Consensus 470 ~~i~~l~~~~~ 480 (486)
+.++.|.++++
T Consensus 363 ~~l~~l~~~l~ 373 (374)
T PRK05839 363 KALEIIKTYLE 373 (374)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-14 Score=141.15 Aligned_cols=337 Identities=11% Similarity=0.048 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcC-CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 85 SIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLK-LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 85 ~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
.....+.+.+..........|....+...+.+.+.+++.+..+ .... ....+++|+|+++++..++.+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~----~~~~I~it~G~~~al~~~~~~l~~---- 91 (388)
T PRK08637 20 MYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGK----KMSLPIVTNALTHGLSLVADLFVD---- 91 (388)
T ss_pred chHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCcccccc----ccceeeEccchHHHHHHHHHHhcC----
Confidence 3334444444443233344565555566777777777665432 2211 012578999999988766655443
Q ss_pred HccccCCCCeEEEecCCCchHHHHHH-HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAA-QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA 242 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~-~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~ 242 (486)
+++.|++..+++..+...+ ...|+ +++.+|++.+ ++.+|+++|+++++..... ...+++.+.++||
T Consensus 92 -------~gd~Vlv~~P~y~~~~~~~~~~~g~---~vv~v~~~~~-~~~~d~~~l~~~~~~~~~~--~~~~~~~~~P~NP 158 (388)
T PRK08637 92 -------QGDTVLLPDHNWGNYKLTFNTRRGA---EIVTYPIFDE-DGGFDTDALKEALQAAYNK--GKVIVILNFPNNP 158 (388)
T ss_pred -------CCCEEEEcCCCCccHHHHHHHhcCC---EEEEecccCC-CCcCCHHHHHHHHHhhccC--CCEEEEEeCCCCC
Confidence 6677888988888888765 46788 9999998422 3478999999988722111 2345777779999
Q ss_pred ccccCC---chHHHHHHHH-----hCceEEeeccccchhccCccchhhhc---CC-CCCCcee-eccccccC-CCCcceE
Q 038818 243 ITTVDP---LGPLCDIAKR-----YSIWVHVDAAYAGSACICPEFRHFID---GI-EGADSFS-LNAHKWFF-TTLDCCC 308 (486)
Q Consensus 243 ~G~idp---l~~I~~i~~~-----~g~~lhvD~a~g~~~~~~~~~~~~~~---~~-~~aDsi~-~~~hK~l~-~p~~~g~ 308 (486)
||.+-+ +++|+++|++ |++++++|.+|.............+. .. +++-.+. .++.|.++ ...-+|+
T Consensus 159 TG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~ 238 (388)
T PRK08637 159 TGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGF 238 (388)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEE
Confidence 998844 6777777775 89999999999765432111111111 11 1221232 27888655 4456999
Q ss_pred EEeeC-----chHHHHHhcCCc-ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHH----HHHHHH
Q 038818 309 LWVKN-----PNALIKALSTNP-EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNF----LRSHVR 378 (486)
Q Consensus 309 ~~~~~-----~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~----~~~~~~ 378 (486)
+++.. +.... .+.... .+.... .. ....+...++...+....+.+. .....+
T Consensus 239 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~--------------~~---~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 300 (388)
T PRK08637 239 ITFGTKAGSSQTVKE-ALEKKVKGLIRSN--------------IS---NGPHPSQSAVLRALNSPEFDKEKQEKFQILKE 300 (388)
T ss_pred EEEccccCCcHHHHH-HHHHHHHHHhhcc--------------cC---CCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88753 33322 221100 000000 00 1123333444444433333322 233444
Q ss_pred HHHHHHHHHhCC---CCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeE
Q 038818 379 MAQLFQELVGGD---NRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYF 453 (486)
Q Consensus 379 ~a~~l~~~L~~~---~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~ 453 (486)
..+.+.+.|++. +++.+. +|..+.+.+ ++.+ ....++.+.+. ++|+.... .+..+
T Consensus 301 r~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~l~~---------------~~~~~l~~~l~~~~gv~~~~----~~~~~ 360 (388)
T PRK08637 301 RYEKTKEVLYDGKYDDAWQAY-PFNSGYFMCLKLKG---------------VDAEELRVHLLEKYGIGTIA----LNETD 360 (388)
T ss_pred HHHHHHHHHHhhCCCCCcccc-cccceEEEEecCCh---------------HHHHHHHHHHhhhcceEEEe----ccCCc
Confidence 455566666554 245554 444455444 4421 11346677775 45764432 24568
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+|+++.. .+++++++.++.|.++++.+
T Consensus 361 iRi~~~~--~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 361 LRIAFSC--VEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred eEEEeec--CCHHHHHHHHHHHHHHHHhc
Confidence 9999964 46779999999999988754
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=141.74 Aligned_cols=338 Identities=14% Similarity=0.043 Sum_probs=208.9
Q ss_pred cceecCCCCCHH-HHHHHHHHhhcCCCcc------ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 76 YFAYFPSSGSIA-GFLGEMLSSGFNVVGF------NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 76 ~~~~~~~~~~~~-~~~~~~l~~~~n~~~~------~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
-+.|.++|...| .++..+-.+.+|.+.. ....++.+.++-+++.+.|+++++.|+++ .-.++++|||.
T Consensus 5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y-----~Vlfl~GggT~ 79 (364)
T PRK12462 5 QLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEY-----GVVFLQGGSSL 79 (364)
T ss_pred cceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCC-----eEEEEeccHHH
Confidence 346777765544 5555555566554331 22356778899999999999999998764 23455666776
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCe-EE-EecCCCchH--HHHHHHHcCCCCCCeEEEecCCCC--CcccCHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRL-VV-YGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSS--SFTLTPESLQAAID 222 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~-~v-~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~--~~~~d~~~L~~~l~ 222 (486)
+.-.+++.... ++. ++ ++. ..+++ +.+-++.+| ++..+...+.. ....+++.++ +.
T Consensus 80 ~~ea~~~Nll~-----------~g~~~~~~~~-tG~fg~r~~~ea~~~g----~v~~~~~~~~~~~~~~p~~~~~~--~~ 141 (364)
T PRK12462 80 QFSMIPMNFSR-----------PGAAAPEYVT-TGYWSRKAIGEASRVA----AMRVVWDGAASGYRTLPSLAELD--WD 141 (364)
T ss_pred HHHHHHHHcCC-----------CCCcEEEEEe-CCHHHHHHHHHHHhcC----CceEecCcCCCCCCcCCCHHHhc--cC
Confidence 66544443322 222 33 222 46665 445555554 23333321111 1244566652 22
Q ss_pred HHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCC
Q 038818 223 LDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFT 302 (486)
Q Consensus 223 ~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~ 302 (486)
++ ..+|.+|+..|.+|...| ++.+.++..++||++-+.+....+ ++..|.+..+.+|.++
T Consensus 142 ~d------~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid--------~~~~dvi~agsQKnlg- 201 (364)
T PRK12462 142 AR------APFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFD--------VEAYGMVYAHAQKNLG- 201 (364)
T ss_pred CC------CcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCC--------hHHccEEEeeccccCC-
Confidence 21 347999999999999986 344446899999997655433332 2356999999999998
Q ss_pred CCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH--HHHHHHHHHHHH
Q 038818 303 TLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA--NLRNFLRSHVRM 379 (486)
Q Consensus 303 p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~--g~~~~~~~~~~~ 379 (486)
|.|.++++++++.+ .+.-...|.|+...... . ...++ .+-+ +....+-.+++.+-.+ |++.+.++..+.
T Consensus 202 P~Gltvvivs~~al-~~~~~~~p~~ldy~~~~-----~-~~s~~-nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~k 273 (364)
T PRK12462 202 PAGVTVAIIRRALL-ERVPDTLPPMLDFRTHV-----E-HRSNY-NTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARK 273 (364)
T ss_pred CCceEEEEECHHHH-hhccccCCchhhHHHHH-----h-cCCCC-CCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88999999998764 22222223332211000 0 00000 0100 1223344455555556 999999999999
Q ss_pred HHHHHHHHhCCCCeEEec-CC---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEE
Q 038818 380 AQLFQELVGGDNRFEIVA-PR---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIR 455 (486)
Q Consensus 380 a~~l~~~L~~~~~~~~~~-~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR 455 (486)
++.+++.|++.++|.... .+ ..-.|+|++.. .++.+++.+...+.|.+.+.+.. ..+.+|
T Consensus 274 a~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~--------------~~l~~~f~~~a~~~gl~~lkGhr--~vgg~R 337 (364)
T PRK12462 274 AAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQ--------------PRLDTLFKEQSTEAGFCGLSGHR--SIGGIR 337 (364)
T ss_pred HHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCC--------------HHHHHHHHHHHHHCCCccccCCc--ccCceE
Confidence 999999999987665432 11 23467888754 35677888888888986555432 245599
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 456 FAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 456 ~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+|+-| ..+.+++++|++-+++..++
T Consensus 338 as~yn-a~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 338 ASLYN-AVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred EEcCC-CCCHHHHHHHHHHHHHHHHh
Confidence 99954 66777999999999887653
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-14 Score=140.55 Aligned_cols=300 Identities=14% Similarity=0.045 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC-CCchHHHHHHHH
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD-QTHSALQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a~~~ 191 (486)
....++.+++++++|.+ ..++++||++|+..++.+++...... +.++..|++.. ..|.+...+...
T Consensus 69 ~~~~~l~~~la~~~g~~---------~~~~~~sg~~a~~~a~~~~~~~~~~~----~~~~~~vi~~~~~yh~~~~~~~~~ 135 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD---------RVFFCNSGAEANEAALKLARKYTGDK----GKEKKKIIAFENSFHGRTMGALSA 135 (379)
T ss_pred HHHHHHHHHHHhhCCCC---------EEEEeCCcHHHHHHHHHHHHHHhhcc----CCCCCeEEEECCCcCCccHHHHHh
Confidence 44556777888888864 47899999999999988776432100 01233444444 444333333222
Q ss_pred cCCCCCCeEEEecCCCCCc--ccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc----CCchHHHHHHHHhCceEEe
Q 038818 192 AGIDPKNFRAIKTTKSSSF--TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV----DPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~--~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i----dpl~~I~~i~~~~g~~lhv 265 (486)
.+.........++..+-.+ ..|+++|++.+.+. +.+|+++..++++|.. +++++|.++|+++|+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~ 209 (379)
T TIGR00707 136 TGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIF 209 (379)
T ss_pred cCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2210000011222211011 11899999988653 3366677776666754 2489999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
|++|.++............++ ..|.++ ..|.++.+..+|+++.++ +... .+.... . . . +
T Consensus 210 De~~~~~~~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~riG~~~~~~-~~~~-~~~~~~--~-~-----------~--~ 268 (379)
T TIGR00707 210 DEVQTGIGRTGKFFAYEHYGI-EPDIIT--LAKGLGGGVPIGATLAKE-EVAE-AFTPGD--H-G-----------S--T 268 (379)
T ss_pred eccccCCCccchhhhHHhcCC-CCCEEE--EcccccCCcccEEEEEcH-HHHh-hhcCCC--C-C-----------C--C
Confidence 999975322111011001122 345554 589999767788887753 3322 221100 0 0 0 0
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe---cCCCeeEEEEEeecCCCCCCCCCCcc
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV---APRNFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~---~~~~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
. ++......++..+++.+.. .++.++..++++++++.|+++ +.... .++..+++.+.+.+.
T Consensus 269 ~-~~~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~----------- 332 (379)
T TIGR00707 269 F-GGNPLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEEL-GKNYPNKEVRGKGLMLGIELEAP----------- 332 (379)
T ss_pred C-CCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH-HhhCCCCccccCceEEEEEecCc-----------
Confidence 0 1111222334444454422 245566777778888777654 22211 112344556655321
Q ss_pred chHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
..++.+.|.++|+.+. +. +..++|+++. ...++++++++++.|+++
T Consensus 333 -----~~~~~~~l~~~Gv~v~-~~---~~~~lRi~~~-~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 333 -----CKDIVKKALEKGLLVN-CA---GPKVLRFLPP-LIITKEEIDEAVSALEEA 378 (379)
T ss_pred -----HHHHHHHHHHCCcEEe-eC---CCCEEEEECC-CcCCHHHHHHHHHHHHHh
Confidence 2466777888897543 32 2468999973 446778999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-13 Score=138.28 Aligned_cols=298 Identities=11% Similarity=0.078 Sum_probs=171.5
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC--
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG-- 193 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G-- 193 (486)
.++.+.|+++.+.+ ...++++|++||..|+..+|.......+ ..++.+|......|-+...+....|
T Consensus 85 ~~l~~~l~~~~~~~---------~~~~~~sGseA~e~a~klar~~~~~~~~--~~~~~ii~~~~~~HG~~~~~~~~~~~~ 153 (403)
T PRK05093 85 LRLAKKLIDATFAE---------RVFFANSGAEANEAAFKLARRYACDRHG--PEKTEIIAFHNSFHGRTLFTVSVGGQP 153 (403)
T ss_pred HHHHHHHHhhCCCC---------EEEEeCchHHHHHHHHHHHHHHHhhcCC--CCCCeEEEEcCCcCCchhhhHhhcCCh
Confidence 35556777776542 4689999999999999999876432111 1144566677777876554444322
Q ss_pred -----CC--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCce
Q 038818 194 -----ID--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIW 262 (486)
Q Consensus 194 -----~g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~ 262 (486)
++ ...+..+|. -|++++++.+.+. +.+|++....+..|.+.| +++|.++|++||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~ 220 (403)
T PRK05093 154 KYSDGFGPKPADITHVPF-------NDLAAVKAVIDDH------TCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNAL 220 (403)
T ss_pred hhhhcCCCCCCCcEEeCC-------CCHHHHHHHhcCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 11 112333432 2789999888532 345666644444444433 99999999999999
Q ss_pred EEeeccccchhccCccc-hhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 263 VHVDAAYAGSACICPEF-RHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~-~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
+++|.+|.+... .... .....++ ..|.+ +..|.+++.+..|.++.+++ . .+.+.. ....
T Consensus 221 lI~DEv~~g~g~-~g~~~~~~~~~~-~pdi~--s~sK~l~~G~rig~vv~~~~-i-~~~l~~---~~~~----------- 280 (403)
T PRK05093 221 LIFDEVQTGMGR-TGDLFAYMHYGV-TPDIL--TSAKALGGGFPIGAMLTTAE-I-ASHFKV---GTHG----------- 280 (403)
T ss_pred EEEechhhCCCC-CccchhhhhcCC-CCCEE--EecccccCCcceEEEEEcHH-H-HhhcCC---CCCC-----------
Confidence 999999986422 1111 0001122 34544 44699886677888887653 2 122211 0000
Q ss_pred CCccccCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--CeeEEEEEeecCCCCC
Q 038818 342 KDWQITLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--NFAVVCFRVLPSASGL 415 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~~~~v~f~~~~~~~~~ 415 (486)
.+. ....+.++++ ++.+-. .+..++..++.+++.+.|+++. .+.++... ...++.+.+.+..
T Consensus 281 --~t~----~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~--- 348 (403)
T PRK05093 281 --STY----GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQY--- 348 (403)
T ss_pred --CCC----CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcc---
Confidence 010 1122333333 333311 2455677778888888887651 11111111 2233444443210
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.....++.+.+.++|+++. + .+..++|+++. ...++++|+++++.|.++++++.
T Consensus 349 ---------~~~~~~~~~~l~~~Gv~v~-~---~g~~~lRl~~~-~~~~~~~i~~~~~~l~~~l~~~~ 402 (403)
T PRK05093 349 ---------KGRARDFLNAAAEEGVMVL-V---AGPDVLRFAPS-LVIEEADIDEGLARFEKAVAKVV 402 (403)
T ss_pred ---------hhHHHHHHHHHHHCCeEEe-c---CCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHhc
Confidence 1234567788888897543 2 23468999874 45578899999999999887764
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-14 Score=137.03 Aligned_cols=286 Identities=17% Similarity=0.110 Sum_probs=195.4
Q ss_pred HHHHHHHHHcC-CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 117 IVMDWLGEMLK-LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 117 ~~~~~l~~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
++++.+++.+| .+.+ .++++.|+++.+-..+.+.+. +++.|+++..++......++..|.
T Consensus 61 ~l~~a~a~~~~~~~~~-------~V~~gnGsde~i~~l~~~~~~-----------~gd~vl~~~Ptf~~Y~~~a~~~g~- 121 (356)
T COG0079 61 ELRAALAEYYGVVDPE-------NVLVGNGSDELIELLVRAFVE-----------PGDTVLIPEPTFSMYEIAAQLAGA- 121 (356)
T ss_pred HHHHHHHHHhCCCCcc-------eEEEcCChHHHHHHHHHHhhc-----------CCCEEEEcCCChHHHHHHHHhcCC-
Confidence 44566778887 5544 566677877776555555544 556788888899889999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchh
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSA 273 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~ 273 (486)
+++.||.++ +.+|++++.+++.+++ .+|+++.++||||..-+.++|.++++.. +.+++||+||.-+.
T Consensus 122 --~~~~v~~~~---~~~d~~~~~~~~~~~~------~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~ 190 (356)
T COG0079 122 --EVVKVPLKE---FRLDLDAILAAIRDKT------KLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFS 190 (356)
T ss_pred --eEEEecccc---cccCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcC
Confidence 999999873 7999999999988743 3899999999999998888888877754 88999999996644
Q ss_pred ccCccchhhhcCCCCCC--ceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 274 CICPEFRHFIDGIEGAD--SFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aD--si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
- +..... +..-+ .+.=++.|.++ +..-+|+ .+.+++.........++|-
T Consensus 191 ~--~~~~~l---~~~~~nlivlRTfSKa~gLAGlRlGy-~ia~~~~i~~l~~vr~p~~---------------------- 242 (356)
T COG0079 191 P--ESSLEL---LKYPPNLIVLRTFSKAFGLAGLRVGY-AIANPELIAALNKVRPPFN---------------------- 242 (356)
T ss_pred C--chhhhh---ccCCCCEEEEEecHHhhhcchhceee-ccCCHHHHHHHHHhcCCCC----------------------
Confidence 3 111111 11222 45556889777 4456887 4555555544334444431
Q ss_pred CCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 351 RFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
...++..++...+. .+.+++..+...+-+.++.+.|++++ +.-+.+...|.+.+++.. .. ..
T Consensus 243 -v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~aNFvlv~~~~--------------~~-~~ 305 (356)
T COG0079 243 -VSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LFGVFPSQANFVLVRVPD--------------AE-AA 305 (356)
T ss_pred -CCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcEEEEECCC--------------cc-HH
Confidence 12233344444332 25677888888899999999999986 553335556777777653 12 34
Q ss_pred HHHHHHHhcCcEEEeeee-ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGM-VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~-~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+.+.|.++|+++-.... .....++|+++. ++++-++++++|+++...
T Consensus 306 ~l~~~L~~~giivR~~~~~~~~~~~lRitvg----t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 306 ALAEALLKKGILVRDCSSVGLLPGYLRITVG----TPEENDRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHCCEEEEeCCCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHHhc
Confidence 567778888986433322 123569999984 444669999999988754
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=139.84 Aligned_cols=300 Identities=14% Similarity=0.101 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
..++.+.++++.+.+ ..++++||++||..|+.++|.....+ |..+ +..+|......|-+..-+....+.
T Consensus 75 ~~~la~~l~~~~~~~---------~v~~~~sGseA~~~al~~ar~~~~~~-G~~~-r~~vi~~~~~yhg~~~~~~~~~~~ 143 (389)
T PRK01278 75 QERLAERLVENSFAD---------KVFFTNSGAEAVECAIKTARRYHYGK-GHPE-RYRIITFEGAFHGRTLATIAAGGQ 143 (389)
T ss_pred HHHHHHHHHhhCCCC---------EEEEcCCcHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEECCCcCCCcHHHHhccCC
Confidence 344556677765432 57999999999999999998753321 1110 223444555555554444333332
Q ss_pred CCCCeEEEecCCCCCc----ccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc----CCchHHHHHHHHhCceEEee
Q 038818 195 DPKNFRAIKTTKSSSF----TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV----DPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~----~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i----dpl~~I~~i~~~~g~~lhvD 266 (486)
....-...|..+ ++ ..|+++|++++++. +.+|+++...+++|.+ +++++|+++|++||+++++|
T Consensus 144 ~~~~~~~~~~~~--~~~~~~~~d~~~l~~~l~~~------~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~D 215 (389)
T PRK01278 144 EKYLEGFGPLVP--GFDQVPFGDIEALKAAITPN------TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFD 215 (389)
T ss_pred hhhcccCCCCCC--CceEeCCCCHHHHHHhhCCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 100000011111 11 25899999988642 3467777666777733 57999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
++|.++......+.....++ ..|.+ +..|.++..+..|.++.+++ .. +.+.... . . .+.
T Consensus 216 Ev~~g~g~~g~~~~~~~~~~-~pdi~--t~sK~l~~G~~ig~~~~~~~-~~-~~~~~~~----~----------~--~t~ 274 (389)
T PRK01278 216 EVQCGMGRTGKLFAHEWAGV-TPDIM--AVAKGIGGGFPLGACLATEE-AA-KGMTPGT----H----------G--STY 274 (389)
T ss_pred ccccCCCcCCcceeecccCC-CCCEE--EEehhccCCcceEEEEEcHH-HH-hccCCCC----C----------C--CCC
Confidence 99986422111111011122 24654 45798886667888887654 22 2221100 0 0 011
Q ss_pred cCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEEeecCCCCCCCCC
Q 038818 347 TLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFRVLPSASGLGDGK 419 (486)
Q Consensus 347 ~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~ 419 (486)
....+.+.++ ++.+-.+ +..++..++.+++++.|++ .+++-....+...++.+.+...
T Consensus 275 ----~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~~-------- 339 (389)
T PRK01278 275 ----GGNPLAMAVGNAVLDVILAP---GFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVP-------- 339 (389)
T ss_pred ----CccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEecC--------
Confidence 1123333333 4433222 2334555556666665543 3322111122223334433211
Q ss_pred CccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 420 ANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..++.+.+.++|+...+. +..++|+++. ...++++|+++++.|+++++++
T Consensus 340 --------~~~~~~~l~~~GV~~~p~----~~~~lR~~p~-~~~~~~~i~~~l~~l~~~l~~~ 389 (389)
T PRK01278 340 --------NRDLVQALRDEGLLTVGA----GDNVVRLLPP-LIITEEEIDEALERLERAAESL 389 (389)
T ss_pred --------HHHHHHHHHHCCeEEeec----CCCEEEEeCC-cccCHHHHHHHHHHHHHHHHhC
Confidence 246677777788754332 3468999973 3467889999999999887653
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-14 Score=139.85 Aligned_cols=307 Identities=12% Similarity=0.026 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
..+.+.++.+++++..+++ ..++++||++||..|+.++|....+ +.. .+..+|......|-+...++.
T Consensus 76 ~~~~~~~la~~l~~~~~~~---------~v~f~~SGseA~e~Aik~ar~~~~~--~~~-~r~~ii~~~~~yHG~t~~~~~ 143 (395)
T PRK03715 76 YNEPMAKLAGLLTQHSCFD---------KVFFANSGAEANEGAIKLARKWGRK--HKN-GAYEIITFDHSFHGRTLATMS 143 (395)
T ss_pred cCHHHHHHHHHHhhccCCC---------EEEEeCCcHHHHHHHHHHHHHHhhc--cCC-CCcEEEEECCCcCCChHHHHh
Confidence 3567777778888765432 5799999999999999999864211 101 134456666678888777776
Q ss_pred HcCCCCCCeEEEecCCC-C-CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEE
Q 038818 191 IAGIDPKNFRAIKTTKS-S-SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVH 264 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~-~-~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lh 264 (486)
..|...-.....|.... . .-..|+++|++.+.+. ..+|++.......|.+-| +++|.++|++||++++
T Consensus 144 ~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI 217 (395)
T PRK03715 144 ASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLI 217 (395)
T ss_pred hcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 66642101111111110 0 0024788999888532 347888888888888877 9999999999999999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
+|+++.|+.....-+.....++ ..|.+++ .|.++..+++|.++.+++-. .+ .+.+..+
T Consensus 218 ~DEv~tG~GRtG~~~a~~~~gv-~PDi~t~--gK~lg~G~p~~av~~~~~i~---~~--~~~~~~~-------------- 275 (395)
T PRK03715 218 VDEVQTGCGRTGTLFAYELSGI-EPDIMTL--GKGIGGGVPLAALLAKAEVA---VF--EAGDQGG-------------- 275 (395)
T ss_pred EeccccCCCCCcchhhHhhcCC-CCceeee--hhhhhCCcceEEEEEccccc---cc--cCCCcCC--------------
Confidence 9999986322111111111133 4787776 48888767788888776521 11 1111100
Q ss_pred cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCCeeEEEEEeecCCCCCCCCCCc
Q 038818 345 QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRNFAVVCFRVLPSASGLGDGKAN 421 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 421 (486)
|+ .+.+....+...++..+-. .+..++..++.++|++.|+++ .++.-+ .-...++.+.+..+
T Consensus 276 T~-~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~~v-rG~Glm~~i~l~~~---------- 340 (395)
T PRK03715 276 TY-NGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLEGE-RGEGLLRALLLGKD---------- 340 (395)
T ss_pred CC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcCeE-EcceeEEEEEecCc----------
Confidence 11 1111222333444444422 346777888888888888653 123212 12345556655421
Q ss_pred cchHHHHHHHHHHH---HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 422 EGANELNRKLLESI---NASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 422 ~~~~~~~~~l~~~l---~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...++.+.+ .++|++. .+. +...+|++. ....|++|||++++.|+++++++
T Consensus 341 -----~~~~~~~~~~~~~~~Gi~~-~~~---~~~~lR~~p-~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 341 -----IGPQIVEKARDMQPDGLLL-NAP---RPNLLRFMP-ALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred -----hHHHHHHHHHhccCCCEEE-eec---CCCEEEEeC-CcccCHHHHHHHHHHHHHHHHhh
Confidence 112333333 3348643 221 235799998 56888999999999999998764
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-13 Score=139.14 Aligned_cols=303 Identities=13% Similarity=0.060 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCC-CeEEEecCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENIS-RLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~-~~~v~~s~~~H~s~~~a~~ 190 (486)
.....++.++++++.|.+ ..++++||++|+..|+.+++...-+ .+.. ..++......|-....+..
T Consensus 80 ~~~~~~la~~l~~~~~~~---------~v~~~~gg~eA~~~al~~a~~~~~~----~~~~~~~ii~~~~~yhg~~~~~~~ 146 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD---------KVFFCNSGAEANEAAIKLARKYGHK----KGIEKPEIITAENSFHGRTLATLS 146 (396)
T ss_pred CHHHHHHHHHHHhhcCCC---------EEEECCCcHHHHHHHHHHHHHHhcc----cCCCCCeEEEECCCcCcccHHHHH
Confidence 456667778888887653 5799999999999999988765210 0111 3344444445544333333
Q ss_pred HcCCCCCCeEEEecCCCCCc----ccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc----CCchHHHHHHHHhCce
Q 038818 191 IAGIDPKNFRAIKTTKSSSF----TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV----DPLGPLCDIAKRYSIW 262 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~----~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i----dpl~~I~~i~~~~g~~ 262 (486)
..+.........|... +. ..|+++|++++.+. +.+|+++...+++|.. +.+++|.++|++||++
T Consensus 147 ~~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~i~~~------~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 218 (396)
T PRK02627 147 ATGQPKYQEGFEPLVE--GFIYVPFNDIEALKAAITDK------TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGIL 218 (396)
T ss_pred hcCCccccccCCCCCC--CceEeCCCCHHHHHHhcCCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 3332100001112111 11 22899999988432 4467777777777743 3489999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
+++|++|+++............++ ..|.++ ..|.++.....|.++.+++ .. +.+... ... .
T Consensus 219 lI~DE~~~g~g~~g~~~~~~~~~~-~pdi~t--~sK~~~~G~rig~~~~~~~-~~-~~~~~~----~~~----------~ 279 (396)
T PRK02627 219 LILDEVQTGMGRTGKLFAYQHYGI-EPDIMT--LAKGLGGGVPIGAVLAKEK-VA-DVFTPG----DHG----------S 279 (396)
T ss_pred EEEechhcCCCccCceeeehhcCC-CCCEEE--EcchhhCCcccEEEEEcHH-HH-hccCCC----CCC----------C
Confidence 999999986422111011001122 346555 4699886677898887643 22 222110 000 0
Q ss_pred CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEEeecCCCCCCCC
Q 038818 343 DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFRVLPSASGLGDG 418 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~ 418 (486)
+. ....+.+.+++..+..-...+..++..++.+++++.|.+ .+.+..+ .....++.+.+..
T Consensus 280 --t~----~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~-------- 344 (396)
T PRK02627 280 --TF----GGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEV-RGLGLMIGIELDR-------- 344 (396)
T ss_pred --CC----CCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeeee-ccCcEEEEEEecC--------
Confidence 00 112233333333321100123445555666666665544 3322222 2233455555521
Q ss_pred CCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 419 KANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+ ..++.+.+.++|+.+ .+. +..++|+++. ...++++|+++++.|+++++++
T Consensus 345 ------~--~~~~~~~l~~~Gv~v-~~~---~~~~lRi~~~-~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 345 ------P--AAEIVKKALEKGLLI-NVT---GDNVLRLLPP-LIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred ------c--HHHHHHHHHHCCeEE-eec---CCCEEEEECC-cccCHHHHHHHHHHHHHHHHhh
Confidence 1 346777777788754 332 2367999873 4567889999999999988765
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=133.43 Aligned_cols=316 Identities=13% Similarity=0.045 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
.+++|.++.+.+.++++.-+ ..-|+++||||++.|+..||... | ++.+|......|-+.+....
T Consensus 91 Pte~Ei~~Aell~~~~p~~e--------~vrfvnSGTEAtmsAiRlARa~T-------g-R~kIikF~G~YHG~~D~~lv 154 (432)
T COG0001 91 PTELEVELAELLIERVPSIE--------KVRFVNSGTEATMSAIRLARAYT-------G-RDKIIKFEGCYHGHSDSLLV 154 (432)
T ss_pred CCHHHHHHHHHHHHhcCccc--------EEEEecchhHHHHHHHHHHHHhh-------C-CCeEEEEcCCCCCCccHHHh
Confidence 36788888899999987633 46899999999999999999864 1 33444456666765554443
Q ss_pred HcC-------------CCC---CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----ch
Q 038818 191 IAG-------------IDP---KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LG 250 (486)
Q Consensus 191 ~~G-------------~g~---~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~ 250 (486)
-.| ++. ..++.+|.+ |++.|++++++. |.....|++.-.-.+.|.|-| ++
T Consensus 155 ~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-------D~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~ 224 (432)
T COG0001 155 KAGSGAATLGSPSSPGVPADVAKHTLVLPYN-------DLEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLE 224 (432)
T ss_pred hcCcCcccCCCCCCCCCChhhhccEEEecCC-------CHHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHH
Confidence 332 211 134455543 899999999864 344667888888888899877 78
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+|.++|+++|+.|+.|+...|+-..... ....-++ ..|..++ .|.+++..++|.+--|.+ .+. .+. ..+.+++
T Consensus 225 ~Lr~lt~e~G~lLI~DEViTGFR~~~gG-aq~~~gi-~PDlttl--GKiIGGGlP~ga~gGr~e-iM~-~~~-p~g~vyq 297 (432)
T COG0001 225 GLRELTEEHGALLIFDEVITGFRVALGG-AQGYYGV-EPDLTTL--GKIIGGGLPIGAFGGRAE-IME-QLA-PLGPVYQ 297 (432)
T ss_pred HHHHHHHHcCcEEEEecchhhcccCCcc-cccccCc-Ccchhhh--hhhhcCCcceeeeccHHH-HHh-hhC-CCCCccc
Confidence 9999999999999999998775432111 1111122 4566554 699999999999887654 222 111 1111221
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHH---HHHhch-HH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEE
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLV---LRSFGV-AN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVC 405 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~-~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~ 405 (486)
.++-+...+.+.+. ++.+-. ++ |+.+.+.-.+++.-|.+.+.+. ++.+.......+++
T Consensus 298 ----------------aGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~~ 360 (432)
T COG0001 298 ----------------AGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMFG 360 (432)
T ss_pred ----------------cCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceEE
Confidence 12223344444443 443322 22 4444444444444455555554 55554444456777
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+.+.+...+.-+.+...+.. ...++...|.++|+ ++.+..++ ..+.+...+++|||+++++++++.+++..
T Consensus 361 i~F~~~~~~n~~da~~sd~~-~~~~~~~~~l~~GV-~l~ps~~e------a~flS~ahte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 361 IFFTEEGVRNYADAKRSDVE-RFAKFFHHLLNRGV-YLAPSQFE------AGFLSTAHTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred EEecCCCCCCHHHHHhhchH-HHHHHHHHHHhCCc-ccCCcccc------ceeeecccCHHHHHHHHHHHHHHHHHhhc
Confidence 77665321100000011222 23455558889997 56655332 33445667888999999999999887753
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-13 Score=136.45 Aligned_cols=317 Identities=13% Similarity=0.003 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.|++++.-..+ ..+|+++||||+..|+..||.....+ +..+ +..+|......|-...-+...
T Consensus 84 ~~~~~~la~~l~~~~p~~~~-------~v~f~~sGseA~e~A~klar~~~~~~-~~~~-r~~ii~~~~~yHG~t~~~ls~ 154 (423)
T PRK05964 84 HEPAERLAQRLVALTPGGLD-------HVFFSDSGSVAVEVALKMALQYWRNR-GEPG-RSRFLSLRGGYHGDTIGTMSV 154 (423)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEEcCCcCCccHHHHhc
Confidence 34455667788887631111 57999999999999999999763221 1111 233444454555433333332
Q ss_pred cCCC---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec-CCccccccCC----chHHHHHHH
Q 038818 192 AGID---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAITTVDP----LGPLCDIAK 257 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G~idp----l~~I~~i~~ 257 (486)
.+-+ ...+..+|....+....++++|++.+++. +..+..|++.. .....|.+-| +++|.++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~ 231 (423)
T PRK05964 155 GDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICD 231 (423)
T ss_pred CCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHH
Confidence 2210 01234444432111122378888888642 22344566654 3555565543 999999999
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC---cccccCccC
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN---PEFLRNKAS 333 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~---~~y~~~~~~ 333 (486)
+||+++++|+++.|+.....-+.....++ ..|.+++ .|+++++ .+.|.++.+++ .. +.+... ..++.
T Consensus 232 ~~g~llI~DEv~tg~gr~G~~~a~~~~~v-~pDi~~~--~K~l~gG~~p~~av~~~~~-i~-~~~~~~~~~~~~~~---- 302 (423)
T PRK05964 232 RHGVLLIFDEIATGFGRTGTLFACEQAGV-SPDIMCL--SKGLTGGYLPLAATLCTAE-IF-EAFYSDDRAKAFMH---- 302 (423)
T ss_pred HcCCEEEEechhhCCCcCcchhHHHhcCC-CCCeeee--ehhhhcCcccceEEEEcHH-HH-HhhhcCCccccccc----
Confidence 99999999999966422111111111223 4677765 4999877 57888776543 32 223111 00010
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec--CCCeeEEEEEe
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA--PRNFAVVCFRV 408 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~v~f~~ 408 (486)
..+-....+.+.++ +..+.. ..+.++..++.+++++.|+++..+..+. .....++.+.+
T Consensus 303 -------------~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l 366 (423)
T PRK05964 303 -------------SPSYTANPLACAAANASLDLFED---EPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVEL 366 (423)
T ss_pred -------------CCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEe
Confidence 01111233333333 333322 2456777888888888887653322221 12334556666
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.... . .+....+.+.+.++|+++ .+. + ..+|++. ....|++|||+++++++++++++
T Consensus 367 ~~~~---------~--~~~~~~l~~~l~~~Gv~v-~~~---~-~~lR~~p-~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 367 DRPV---------L--ERDGPALRAFALERGVLL-RPL---G-NTIYLMP-PYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred ccCc---------c--hhHHHHHHHHHHHCCeEE-Eec---C-CEEEEeC-CcccCHHHHHHHHHHHHHHHhhC
Confidence 4321 0 123457778888889753 332 1 4799987 46788889999999999998764
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=140.97 Aligned_cols=366 Identities=14% Similarity=0.114 Sum_probs=200.2
Q ss_pred HHHHHHHHHHhhcCCCccccccCh-hhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 86 IAGFLGEMLSSGFNVVGFNWMSSP-AATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~~~~~~~~~-~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
++..+.++..+..+. .|.... .....|+.+.+++.+.++..... .+..+.++|+|+++|+..++.+.....+-
T Consensus 108 ~~~~~~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~--~~~~~V~it~Gat~al~~~~~~l~~~~ll- 181 (521)
T TIGR03801 108 PDAFLYEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPP--PGEFDLFAVEGGTAAMCYIFDSLKANELL- 181 (521)
T ss_pred CCHHHHHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCC--CCcCeEEEeCCHHHHHHHHHHHHhHhhcC-
Confidence 345566655554443 343222 33455655557777765432110 00016899999999988777653221111
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCC-----cccCHHHHHHHHHHHHHCCCccEEEEeecC
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSS-----FTLTPESLQAAIDLDIQAGLIPLFLCATVG 239 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~-----~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g 239 (486)
.+++.|++..+.+......+...|.|. +++.++.++.+. |.+|+++|++++++.+ .+|+++.+
T Consensus 182 -----~pGD~Vlv~~P~y~~y~~~~~l~~~g~-~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~------kai~l~nP 249 (521)
T TIGR03801 182 -----KKGDKIALMTPIFTPYLEIPELPRYDF-EVVRIKADEMTEDGTHTWQYPDKELEKLRDPSI------KALFVVNP 249 (521)
T ss_pred -----CCCCEEEEeCCCcHHHHHHHHHhcCCc-EEEEeecccccccccccCCCCHHHHHHhcCCCC------cEEEEeCC
Confidence 167788889899988888888875422 677777764322 8899999998765433 36778899
Q ss_pred CccccccCC---chHHHHHHHHh--CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeC
Q 038818 240 TTAITTVDP---LGPLCDIAKRY--SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKN 313 (486)
Q Consensus 240 tt~~G~idp---l~~I~~i~~~~--g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~ 313 (486)
+||||.+-+ +++|+++|++| ++|+++|.+|+.+.. .+...+.....--.+..+..|.++ +..-.|+++..+
T Consensus 250 ~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~ 326 (521)
T TIGR03801 250 SNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHK 326 (521)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCc
Confidence 999999965 78888899987 899999999976432 222222212111245667899987 445688888765
Q ss_pred chHHHHHhcCC---------ccc--ccCccCCCCCccCCCCccccCCC--------CCCch-----HHHHHHHHh--chH
Q 038818 314 PNALIKALSTN---------PEF--LRNKASDSKQVVDYKDWQITLSR--------RFRAL-----KLWLVLRSF--GVA 367 (486)
Q Consensus 314 ~~~~~~~~~~~---------~~y--~~~~~~~~~~~~~~~~~~~~~sr--------~~~~l-----~~~~~l~~~--g~~ 367 (486)
+..+.+....- ..| +... .....+.+.....+| ..... ++.+....+ +.+
T Consensus 327 ~~v~d~li~~lp~~~~~~l~~ry~~~~~~----p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~ 402 (521)
T TIGR03801 327 DNIFDKLIAELPEEKKKELDKRYSSLTTE----PRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENA 402 (521)
T ss_pred hHHHHHHHHhccHHHHHHHhhhhccccCC----hhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchh
Confidence 53221111100 000 0000 000000000000000 00111 111122222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cCCCeeEEEE-EeecCCCCCCCCCCccch---HHHHHHHHHHHH-hcCcE
Q 038818 368 NLRNFLRSHVRMAQLFQELVGGDNRFEIV-APRNFAVVCF-RVLPSASGLGDGKANEGA---NELNRKLLESIN-ASGQL 441 (486)
Q Consensus 368 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~v~f-~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~-~~g~~ 441 (486)
..+++.+.+.+..+.+.+.| ++.+. .++.....+| .+...... ..+.+...- .....++..+|. +.|++
T Consensus 403 y~~~~~~~~~~R~~~l~~~L----g~~~~~~~~~g~~Y~~~di~~~~~~-~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~ 477 (521)
T TIGR03801 403 YKAETKDICRRREKLLFRGL----GLPLQEDPNDVAYYTLIDLEEWAEK-NYGEEFSSYLKKNYSPVDVLFRLAEETGIV 477 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCCCcCCCCCeEEEEEeehHHHHHH-hcchHHHHHHhccCCHHHHHHHHHHhCCEE
Confidence 45566666777777777777 33322 3455555444 33211000 000000000 000224455554 55776
Q ss_pred EEeeeeECC-EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 442 YVSHGMVAG-IYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 442 ~~~~~~~~~-~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
++++..+.. ..++|+|+.+ .+++++.++.+.|++++++..
T Consensus 478 v~PG~~Fg~~~~~vRisla~--l~~~~~~~~~~rl~~~~~~~~ 518 (521)
T TIGR03801 478 LLPGGGFGGPEWSVRVSLAN--LNEYDYAEIGRAIRKILDEYY 518 (521)
T ss_pred EeCchhcCCCCCeEEEEecC--CCHHHHHHHHHHHHHHHHHHH
Confidence 666655543 5679999953 577799999999999887654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-13 Score=134.80 Aligned_cols=273 Identities=12% Similarity=0.092 Sum_probs=169.9
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++++++.+|++++ ..++|+|+++++...+... +++.|+++...|..+...++..|+
T Consensus 59 ~lr~~ia~~~~~~~~-------~I~~t~G~~~~l~~~~~~~-------------~gd~V~v~~P~y~~~~~~~~~~g~-- 116 (337)
T PRK03967 59 PLREAIAEFYGLDAE-------NIAVGNGSDELISYLVKLF-------------EGKHIVITPPTFGMYSFYAKLNGI-- 116 (337)
T ss_pred HHHHHHHHHhCcCcc-------eEEEcCCHHHHHHHHHHHh-------------CCCeEEEeCCChHHHHHHHHHcCC--
Confidence 344556666677655 7889999998875433221 345677888888888888899999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.++.+. ++.+|++.|++.+. . ..+++++.++||||.+-+.++|.++++ +++++++|++|..+. .
T Consensus 117 -~~~~v~~~~--~~~~d~~~l~~~~~-~------~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~--~ 183 (337)
T PRK03967 117 -PVIDVPLKE--DFTIDGERIAEKAK-N------ASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS--G 183 (337)
T ss_pred -eEEEeecCC--CCCcCHHHHHHhcc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc--c
Confidence 999999874 57899999987642 1 125667899999999999999999995 799999999997542 1
Q ss_pred ccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCch
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL 355 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l 355 (486)
..........+. -.+..++.|.++ ...-+|+++.. ++...........+ ....+
T Consensus 184 ~~~~~~~~~~~~-vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~~~-----------------------~~~~~ 238 (337)
T PRK03967 184 KSLIGLIDEYPN-LILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKPPF-----------------------SLNIL 238 (337)
T ss_pred cchHHHHhhCCC-EEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcCCC-----------------------CCCHH
Confidence 111111111111 145577899998 44678888874 33332221111100 01223
Q ss_pred HHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHH
Q 038818 356 KLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLES 434 (486)
Q Consensus 356 ~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 434 (486)
...++...+ ..+.+.+..++..+.++.+.+.|.+. ..++..+.+.+.+ .+.+.
T Consensus 239 ~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~---------------------~~~~~ 292 (337)
T PRK03967 239 TMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY-----AYPSDANFLLLKL---------------------DAYDY 292 (337)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhH---------------------HHHHH
Confidence 333333333 23445555566667777788888654 1233333332211 14566
Q ss_pred HHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 435 INASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 435 l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.++|+.+ .+......+++|+++. +.++.++++++|+++.+
T Consensus 293 l~~~gi~v-~~~~~~~~~~~Ri~~~----~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 293 LLENGIVV-RKLSGRLEGHIRVTVG----KREENDEFIKALKEIKE 333 (337)
T ss_pred HHHCCEEE-EeCCCCCCCeEEEecC----CHHHHHHHHHHHHHHHH
Confidence 66778643 3222223568999985 34578888888887654
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-13 Score=134.53 Aligned_cols=277 Identities=12% Similarity=0.047 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA 188 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 188 (486)
+...++.+.+.+|+.+.. .+++ ..++|+|+++++..++.+. . .|++...++..+..+
T Consensus 56 ~~~~~Lr~aia~~~~~~~-~~~~-------~i~it~Ga~~~i~~~~~~~-------------d--~v~v~~P~y~~~~~~ 112 (335)
T PRK14808 56 SPDEELIEKILSYLDTDF-LSKN-------NVSVGNGADEIIYVMMLMF-------------D--RSVFFPPTYSCYRIF 112 (335)
T ss_pred CChHHHHHHHHHHhCCCC-CCcc-------eEEEcCCHHHHHHHHHHHh-------------C--cEEECCCCHHHHHHH
Confidence 345566666666665432 5554 7899999999887666543 1 266778899999999
Q ss_pred HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 189 AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 189 ~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
++..|+ +++.+|.++ ++.++... +. .+.+++++.++||||.+-+.+++.+++ ++++|+++|.+
T Consensus 113 ~~~~g~---~~~~v~~~~--~~~~~~~~----~~-------~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~ 175 (335)
T PRK14808 113 AKAVGA---KFLEVPLTK--DLRIPEVN----VG-------EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEA 175 (335)
T ss_pred HHHcCC---eEEEecCCC--cCCCChhH----cc-------CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECc
Confidence 999999 999999875 35555332 11 124788899999999999999999999 58999999999
Q ss_pred ccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc
Q 038818 269 YAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
|.-+. .......+...+. -.++.++.|.++ ...-+|+++..+ +...........+-
T Consensus 176 Y~~f~--~~~~~~~~~~~~~-vi~~~S~SK~~~l~GlRvG~~v~~~-~~~~~l~~~~~~~~------------------- 232 (335)
T PRK14808 176 YYEFH--GESYVDLLKKYEN-LAVIRTFSKAFSLAAQRIGYVVSSE-KFIDAYNRVRLPFN------------------- 232 (335)
T ss_pred hhhhc--CCchHHHHHhCCC-EEEEEechhhccCcccceEEEEeCH-HHHHHHHHhcCCCC-------------------
Confidence 96542 1111121211111 144567899999 455688888654 33332211111000
Q ss_pred CCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 348 LSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 348 ~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
...+..+++...+ ..+.+.+..+...+..+++.+.|++. ++++. ++..+.+.+++... +
T Consensus 233 ----~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~l~~~-------------~- 292 (335)
T PRK14808 233 ----VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFIFMEKE-------------E- 292 (335)
T ss_pred ----CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCCeEEEEeCCCc-------------c-
Confidence 0112222222222 22445666667777788899999887 68765 45666665555421 1
Q ss_pred HHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
..++.+++.++|+.+. .. ..++|+++. +.++.++++++|++.
T Consensus 293 -~~~~~~~l~~~Gi~V~-~~----~~~~Risi~----~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 293 -KERLLEHLRAKNIAVR-SF----REGVRITIG----KREENDMILKELEVF 334 (335)
T ss_pred -HHHHHHHHHHCCeEEE-EC----CCCeEEecC----CHHHHHHHHHHHHhh
Confidence 2456777888897543 22 247999985 346899999998753
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-13 Score=137.43 Aligned_cols=303 Identities=12% Similarity=0.041 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
..++.+.++++++.+ ..++++||++||..|+.++|...... +..+ +..++......|-+..-+....|.
T Consensus 83 ~~~la~~l~~~~~~~---------~v~~~~sGseA~e~Alk~ar~~~~~~-~~~~-r~~ii~~~~~yHG~t~~~~~~~~~ 151 (406)
T PRK12381 83 VLRLAKKLIDATFAD---------RVFFCNSGAEANEAALKLARKYAHDR-YGSH-KSGIVAFKNAFHGRTLFTVSAGGQ 151 (406)
T ss_pred HHHHHHHHHhhCCCC---------eEEEcCCcHHHHHHHHHHHHHHHhhc-CCCC-CCeEEEECCCcCCcchhHHhhcCC
Confidence 345566777776542 57999999999999999998753211 1011 233455555667665544444442
Q ss_pred CC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc-----cCCchHHHHHHHHhC
Q 038818 195 DP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT-----VDPLGPLCDIAKRYS 260 (486)
Q Consensus 195 g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~-----idpl~~I~~i~~~~g 260 (486)
.. ..+..+| ..|+++|++.+.+. +.+|++. +.+++|. .+.+++|.++|++||
T Consensus 152 ~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~------~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~ 217 (406)
T PRK12381 152 PKYSQDFAPLPPDIRHAA-------YNDLNSASALIDDQ------TCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHN 217 (406)
T ss_pred cccccCCCCCCCCeeEeC-------CCCHHHHHHhccCC------eeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 10 0122222 23789999888632 3456665 4444443 356899999999999
Q ss_pred ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
+++++|++|.|+......+.....++ ..|.+ +..|.+++.+..|.++.+++ . .+.+... ...
T Consensus 218 ~llI~DEv~tG~gr~G~~~~~~~~~v-~pDi~--t~sK~l~gG~~ig~~~~~~~-~-~~~~~~~---~~~---------- 279 (406)
T PRK12381 218 ALLIFDEVQTGVGRTGELYAYMHYGV-TPDVL--TTAKALGGGFPIGAMLTTEK-C-ASVMTVG---THG---------- 279 (406)
T ss_pred CEEEEcchhhCCCCCcchhhhHhhCC-CCCEE--EehhhhhCCCceEEEEEcHH-H-HhhcCCC---CCC----------
Confidence 99999999965422111111111123 35654 45799986677888887644 2 2222110 000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--CeeEEEEEeecCCCCCCC
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--NFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~~~~v~f~~~~~~~~~~~ 417 (486)
.++ ++.+.....+..+++.+. -.++.++..++.+++.+.|+++. .+.++... ...++.+.+.+..
T Consensus 280 ---~t~-~~~pl~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~----- 347 (406)
T PRK12381 280 ---TTY-GGNPLASAVAGKVLELIN---TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEY----- 347 (406)
T ss_pred ---CCC-CCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCch-----
Confidence 011 111112222333343432 22466777888888888887651 12222211 1233444443210
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
......+.+.+.++|+++. + .+...+|+++. ...++++||++++.|+++++++.+
T Consensus 348 -------~~~~~~~~~~l~~~Gv~v~-~---~g~~~lRl~p~-~~~t~~~i~~~~~~l~~~l~~~~~ 402 (406)
T PRK12381 348 -------AGKAKQISQEAAKAGVMVL-I---AGPNVVRFAPA-LNISEEEITTGLDRFARACERFVS 402 (406)
T ss_pred -------hhHHHHHHHHHHHCCcEEe-e---CCCCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHHh
Confidence 1234567788888898543 2 13458999983 457788999999999999987754
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=137.82 Aligned_cols=223 Identities=14% Similarity=0.129 Sum_probs=151.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK 187 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 187 (486)
.|....+|+ .++++.|.+ ..++++||+.|+..++.+... +++.|+++...+.....
T Consensus 82 ~Pt~~~Le~----~lA~leg~~---------~~iv~~sG~~Ai~~~l~al~~-----------~Gd~Vv~~~p~Y~~~~~ 137 (427)
T PRK07049 82 HPNSEIVED----RLAVYEGAE---------SAALFSSGMSAIATTLLAFVR-----------PGDVILHSQPLYGGTET 137 (427)
T ss_pred CcCHHHHHH----HHHHHhCCC---------cEEEEccHHHHHHHHHHHHhC-----------CCCEEEEcCCCcccHHH
Confidence 344455554 567777743 468899999887766655543 56677888887776654
Q ss_pred H----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH-----
Q 038818 188 A----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR----- 258 (486)
Q Consensus 188 a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~----- 258 (486)
. +...|+ +++.++ + ..|+++|+++|++..++ ..+.+|+++.++||+|.+-|+++|.+++++
T Consensus 138 ~~~~~l~~~Gi---~~v~~~-~-----~~d~~~l~~~l~~~~~~-~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~ 207 (427)
T PRK07049 138 LLAKTFRNFGV---GAVGFA-D-----GLSEAAIGAAAEAAAAK-GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQ 207 (427)
T ss_pred HHHHHHHhcCc---EEEEEe-C-----CCCHHHHHHHHHhhccC-CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcc
Confidence 4 355677 766665 2 35788898888754322 135678888999999999999999999988
Q ss_pred -hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCC-C-CcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 259 -YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFT-T-LDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 259 -~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~-p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
++++++||.+|.+.....+ . . .++|.+..++.|++++ | .-+|+++ .+++......... ..
T Consensus 208 ~~~~~vvvDety~~~~~~~p-l----~--~g~divv~S~SK~~gG~~glr~G~vv-~~~~l~~~l~~~~-~~-------- 270 (427)
T PRK07049 208 GHRPIIACDNTLLGPVFQKP-L----E--HGADLSVYSLTKYVGGHSDLVAGAVL-GRKALIRQVRALR-SA-------- 270 (427)
T ss_pred cCCCEEEEECCccccccCCc-c----c--cCCCEEEEcCceeecCCCCcEEEEEE-CCHHHHHHHHHHH-Hh--------
Confidence 8999999999876543221 1 1 1689999999999995 3 2355554 4444332221110 00
Q ss_pred CCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
.+........|+.++.+ +.+..++++..+++..+.+.|+++|+++-
T Consensus 271 ------------~g~~ls~~~a~l~~r~L--~tl~~R~~~~~~~a~~la~~L~~~p~V~~ 316 (427)
T PRK07049 271 ------------IGTQLDPHSCWMLGRSL--ETLVLRMERANRNARAVAEFLRDHPKVEK 316 (427)
T ss_pred ------------cCCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 11123445667776644 56788888999999999999999988754
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=133.08 Aligned_cols=313 Identities=11% Similarity=0.061 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+.|++++.-... ..+|+++|||||..|+..||...-.+ | +..+|......|-...-+...
T Consensus 123 ~~~~~~lae~L~~~~p~~~~-------~v~f~~SGsEAve~AlklAr~~t~~~----g-r~~ii~~~~~yHG~t~~~ls~ 190 (459)
T PRK11522 123 DPLRAMLAKTLAALTPGKLK-------YSFFCNSGTESVEAALKLAKAYQSPR----G-KFTFIATSGAFHGKSLGALSA 190 (459)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCCchHHHHHHHHHHHHHhccC----C-CcEEEEecCCCCCCcHHHhhh
Confidence 44455566777777632222 57899999999999999998763110 1 123343444455433333333
Q ss_pred cCCCC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 192 AGIDP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 192 ~G~g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
.|-.. ..+..+|. -|.++++++|+.....+..+.+|++.......|.+-| ++++.++|++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~ 263 (459)
T PRK11522 191 TAKSTFRKPFMPLLPGFRHVPF-------GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDE 263 (459)
T ss_pred cCCcccccCCCCCCCCCcccCC-------CCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHH
Confidence 33210 01222322 1788999988765333445667888888888898877 9999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
||+.+++|+++.|+.....-+.....++ ..|.+++ .|.++.. +++|.++.+++ ... .+... ++....
T Consensus 264 ~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~--gK~lggG~~Pigav~~~~~-i~~-~~~~~-~~~~~~------ 331 (459)
T PRK11522 264 FGALLILDEVQTGMGRTGKMFACEHENV-QPDILCL--AKALGGGVMPIGATIATEE-VFS-VLFDN-PFLHTT------ 331 (459)
T ss_pred cCCEEEeccceecCCccchhhhhhccCC-CCCEEEe--chhhhCCCccceeEEEcHH-HHH-HhccC-CcccCC------
Confidence 9999999999966422111111111233 4677655 7888865 46888888754 222 22211 111110
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeE-EecC--CCeeEEEEEeecCCC
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFE-IVAP--RNFAVVCFRVLPSAS 413 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~-~~~~--~~~~~v~f~~~~~~~ 413 (486)
|+ .+.+....+..++++.+-.+ +..++..++.++|++.|+++. .+. ++.. -...++.+.+..
T Consensus 332 -------T~-~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~--- 397 (459)
T PRK11522 332 -------TF-GGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVD--- 397 (459)
T ss_pred -------CC-CCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecC---
Confidence 11 11111223334445554333 456778888888888886541 121 1111 123455555543
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
++....+.+.+.++|++ +.+.. .+...+|++. ....|++|||+++++|.++++++.
T Consensus 398 -----------~~~~~~i~~~l~~~Gvl-~~~~~-~~~~~lr~~P-pl~~t~~~id~~l~~l~~~l~~~~ 453 (459)
T PRK11522 398 -----------NEIGYNFASEMFRQRVL-VAGTL-NNAKTIRIEP-PLTLTIEQCEQVLKAARKALAAMR 453 (459)
T ss_pred -----------chHHHHHHHHHHHCCeE-EEecC-CCCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHHH
Confidence 12345677888888874 33322 2356899988 457788899999999999987664
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=131.81 Aligned_cols=317 Identities=15% Similarity=0.077 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
+....++.+.+++++..+... ....+| +++|||||..|+..||... + +..+|......|-...-+..
T Consensus 81 ~~~~~~lae~l~~~~~~~~~~----~~~~~f~~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~ls 148 (425)
T PRK09264 81 TTAKREFLETFEETILKPRGL----DYKVQFTGPTGTNAVEAALKLARKVT-------G-RTNIVAFTNGFHGMTLGSLA 148 (425)
T ss_pred cHHHHHHHHHHHHhhcCCcCC----CceEEEeCCCHHHHHHHHHHHHHHhc-------C-CCeEEEECCccCCccHHHHH
Confidence 344555667777765333211 002445 5799999999999998752 1 22344444445543333333
Q ss_pred HcC---------CCCCCeEEEecCCCCCc-ccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc----CCchHHHHHH
Q 038818 191 IAG---------IDPKNFRAIKTTKSSSF-TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV----DPLGPLCDIA 256 (486)
Q Consensus 191 ~~G---------~g~~~v~~v~~d~~~~~-~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i----dpl~~I~~i~ 256 (486)
..| .....+..+|....... .-|+++|++.|++.......+.+|++.......|.+ +.+++|.++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc 228 (425)
T PRK09264 149 VTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLC 228 (425)
T ss_pred hcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHH
Confidence 322 11224556665311000 137788898886532111235577777777766764 3599999999
Q ss_pred HHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCC-CCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFT-TLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
++||+++++|+++.|+......+.....++ ..|.+++ .|.++. .+++|+++++++ +. .+. +... .
T Consensus 229 ~~~g~llI~DEV~tG~GrtG~~~~~~~~~v-~PDi~t~--~K~l~~~G~pigav~~~~~--i~-~~~--~~~~-~----- 294 (425)
T PRK09264 229 RKHDILLIVDDIQAGCGRTGTFFSFERAGI-TPDIVTL--SKSISGYGLPMALVLIKPE--LD-VWK--PGEH-N----- 294 (425)
T ss_pred HHcCcEEEEechhhCCccccHHHHHhhcCC-CCCEEEe--ccccCCCccceEEEEEchh--hh-ccC--CCcc-C-----
Confidence 999999999999976422111111111123 4677776 498876 567899988754 21 111 1000 0
Q ss_pred CCccCCCCccccCCCCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCC-CeeEEEEEee
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPR-NFAVVCFRVL 409 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~-~~~~v~f~~~ 409 (486)
.+. ....+++.+++..+- .-.-.+..++..++.++|++.|++ .|.+ +.... ...++.+.+.
T Consensus 295 --------~T~----~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~-~~~vrg~Gl~~~i~l~ 361 (425)
T PRK09264 295 --------GTF----RGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGL-GAEVRGRGMMQGIDFG 361 (425)
T ss_pred --------CCC----CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCc-eecceecccEEEEEec
Confidence 010 112223222222220 111124556666677777776654 3322 11111 2234455553
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+ .....++.+.+.++|+.+ .+... ....||++. ....|+++|+++++.|+++++++.+
T Consensus 362 ~--------------~~~~~~l~~~~~~~Gv~~-~~~~~-~~~~lr~~p-~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 362 D--------------GELAGKIAAEAFENGLII-ETSGP-EDEVVKLLP-PLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred C--------------hHHHHHHHHHHHHCCCEE-eccCC-CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 234567788888899854 33211 135788876 4567888999999999999887654
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-13 Score=131.55 Aligned_cols=317 Identities=15% Similarity=0.104 Sum_probs=197.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch-HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC-EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt-~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
...+-..+..-+-+..|++.. ...++++.+| |+..+.+.+.|.+ . ....|+.+...|+|-.|++
T Consensus 54 ~~~ltn~l~~d~~~~~G~~~~------~~~~~vP~atgm~l~l~l~~l~~r---~------~a~~Viw~ridqkSc~kai 118 (389)
T PF05889_consen 54 LAKLTNSLVLDALRLAGLRSV------KSCFVVPMATGMSLTLCLLALRMR---P------KAKYVIWPRIDQKSCFKAI 118 (389)
T ss_dssp HHHHHHHHHHHHHHHTTHTTH------CEEEEESS-HHHHHHHHHHHHHHH---C------T--EEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccc------cceEEEecccccHHHHHHHHHhcc---c------CCceEEEeeccccchHHHH
Confidence 345555566666777898753 2456776666 5666666666622 1 3456777889999999999
Q ss_pred HHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-CCchHHHHHHHHhCceEEeec
Q 038818 190 QIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-DPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-dpl~~I~~i~~~~g~~lhvD~ 267 (486)
...|+ +++.||... .+....|.+.+|+++++. |..+.+.+.+..+-..|-. |++++|++||++||++++|.+
T Consensus 119 ~~AGl---~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNn 192 (389)
T PF05889_consen 119 ERAGL---EPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNN 192 (389)
T ss_dssp HHTT----EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEG
T ss_pred HhcCC---eEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEcc
Confidence 99999 999998532 234577899999998654 4456788888887778877 559999999999999999999
Q ss_pred cccchhcc-CccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 268 AYAGSACI-CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 268 a~g~~~~~-~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
|||.---. +....... ...++|.+.-+.-|-|.+|-|.+++...++..+...-...|+....
T Consensus 193 AYgvQ~~~~~~~i~~a~-~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRas~---------------- 255 (389)
T PF05889_consen 193 AYGVQSSKCMHLIQQAW-RVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRASA---------------- 255 (389)
T ss_dssp TTTTT-HHHHHHHHHHH-HHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHBTS----------------
T ss_pred chhhhHHHHHHHHHHHH-hcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhhhc----------------
Confidence 99762110 11111101 1247899999999999999999999888876554322222211110
Q ss_pred cCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCC-eeEEEEEeecCCCCCCCCCCcc
Q 038818 347 TLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRN-FAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 347 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~-~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
...+-+...+..+|..|+...+....++-.++.++|++. -+-.+...|. .-.+.|....... ..
T Consensus 256 -----sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~-------~~ 323 (389)
T PF05889_consen 256 -----SPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYE-------IS 323 (389)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCT-------CC
T ss_pred -----ccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchh-------hc
Confidence 123556778888999999999999999999998888642 1444443333 2234444432210 01
Q ss_pred chHHHHHHHHHHHHhcCcE---EEeeeeECC--------EeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQL---YVSHGMVAG--------IYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~---~~~~~~~~~--------~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
....-.|...|..+|+. .+.+..... ..+|-++- ....+++|||.+++.|+++++
T Consensus 324 --~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~As-aiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 324 --QKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAAS-AIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp --SSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE--TT--HHHHHHHHHHHHHHHH
T ss_pred --cchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHH-HhCCCHHHHHHHHHHHHHHhC
Confidence 11123556666665642 122211111 25777744 368899999999999999864
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-13 Score=134.91 Aligned_cols=310 Identities=13% Similarity=0.061 Sum_probs=178.7
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS 183 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 183 (486)
.|...++...+.+.+.+++.+. +++++ ..++|+|+++++.. +..... ++..|++...++.
T Consensus 70 ~Y~p~~g~~~lr~aia~~~~~~-~~~~d-------~I~it~Ga~~al~~-l~~l~~-----------~gd~Vlv~~P~y~ 129 (402)
T TIGR03542 70 GYGPEQGYPFLREAIAENDYRG-RIDPE-------EIFISDGAKCDVFR-LQSLFG-----------SDNTVAVQDPVYP 129 (402)
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCHH-------HEEECCCcHHHHHH-HHHhcC-----------CCCEEEEeCCCCc
Confidence 3544455667777777665332 45544 78999998887754 322211 4566888888998
Q ss_pred HHHHHHHHcCC-C-------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHH
Q 038818 184 ALQKAAQIAGI-D-------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPL 252 (486)
Q Consensus 184 s~~~a~~~~G~-g-------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I 252 (486)
.+...++..|+ | ..+++.+|.++.+.+..|.+.. ..+.+|+++.++||||.+-+ +++|
T Consensus 130 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~i~l~nP~NPTG~~~s~~~~~~l 198 (402)
T TIGR03542 130 AYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE-----------PKIDIIYLCSPNNPTGTVLTKEQLKEL 198 (402)
T ss_pred chHHHHHHcCCccccccccccceEEEeecchhhCCCCCcccc-----------CCceEEEEeCCCCCCCccCCHHHHHHH
Confidence 88888888887 1 1256777876433344553210 12346777899999999966 8889
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCC---CceeeccccccC-CCCcceEEEeeCchHHHHHh-cCCccc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA---DSFSLNAHKWFF-TTLDCCCLWVKNPNALIKAL-STNPEF 327 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~a---Dsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~-~~~~~y 327 (486)
+++|++||+++++|++|..+.. .+.....+..+... -.++.++.|.++ ....+|+++..++ ...... .....+
T Consensus 199 ~~~a~~~~~~iI~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~-l~~~~~~~~~~~~ 276 (402)
T TIGR03542 199 VDYANEHGSLILFDAAYSAFIS-DPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKE-LTYADGHSVIQDW 276 (402)
T ss_pred HHHHHHcCeEEEEEchhhhhcc-CCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHH-HhhcchhhHHHHH
Confidence 9999999999999999976432 11111111122221 133567899997 4556888887543 210000 000000
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG---VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVV 404 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v 404 (486)
..... .+. .....+...++...+. .+.+.+..+...+..+++.+.|++. ++++..+...+.+
T Consensus 277 ~~~~~-----------~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~ 341 (402)
T TIGR03542 277 ERRQC-----------TKF---NGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-GFKVYGGEHAPYL 341 (402)
T ss_pred HHHhh-----------hcc---cCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-CceecCCCceeEE
Confidence 00000 000 0012222223333332 2334555666777888899999886 6776543344556
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+++.+.. + ..++.+.+. +.|+.+..+..+. +..++|+++.. +++++++.++.|+++
T Consensus 342 ~v~l~~~~------------~--~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~---~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 342 WVKTPEGI------------S--SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG---KRENIVEACERIKEA 401 (402)
T ss_pred EEECCCCC------------C--HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC---CHHHHHHHHHHHHhh
Confidence 66654310 1 234566665 4577544443332 35799999742 567899998888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-13 Score=128.10 Aligned_cols=301 Identities=16% Similarity=0.119 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHHHHHHHH
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~~~ 191 (486)
+...++.++|+++.+ ..+ ..+|++||+|||-.|+..||.+.. +..+ .+|.....-|-.-.-+...
T Consensus 84 ~~~~~la~~L~~~s~-~~d-------~vff~NSGaEA~EaAiKlARk~~~------~~~k~~Iia~~nsFHGRT~galS~ 149 (404)
T COG4992 84 EPQAELAEKLVELSP-FAD-------RVFFCNSGAEANEAALKLARKYTG------DPEKSKIIAFENSFHGRTLGALSA 149 (404)
T ss_pred hHHHHHHHHHHhhCc-ccc-------EEEEcCCcHHHHHHHHHHHHHHcC------CCCCcEEEEEcCCcCCccceeeec
Confidence 334456677888876 222 689999999999999999998753 0112 3343444444221111111
Q ss_pred c-------CCC--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 192 A-------GID--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 192 ~-------G~g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
. +.+ ...++.+|.+ |+++|+++|++++. .|++.-..-..|.+-| ++++.++|++
T Consensus 150 t~~~ky~~~F~Pl~~g~~~vpfn-------Di~al~~ai~~~ta------AvivEPIQGEgGV~~~~~~fl~~lr~lCd~ 216 (404)
T COG4992 150 TGQPKYRKGFGPLLPGFRHVPFN-------DIEALEAAIDEDTA------AVIVEPIQGEGGVIPAPPEFLKALRELCDE 216 (404)
T ss_pred cCChhhccCCCCCCCCceecCCC-------CHHHHHHHhccCeE------EEEEecccCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 111 1245666654 89999999998653 6888877777787744 8999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
||+.|+.|+.+.|..--..-+.....++ .-|.++. -|.+++.++.|.++.+ +... ..+ .++-
T Consensus 217 ~g~LLI~DEVQtG~GRTGk~fA~e~~gV-~PDI~tl--aK~LgGG~PigA~la~-~~~~-~~~--~~G~----------- 278 (404)
T COG4992 217 HGALLILDEVQTGLGRTGKLFAYEHYGV-EPDILTL--AKALGGGFPIGAMLAT-EEIA-SAF--TPGD----------- 278 (404)
T ss_pred hCeEEEEeccccCCCccchHHHHHHhCC-CCCEEEe--eccccCCccceeeEEc-hhhh-hcC--CCCc-----------
Confidence 9999999999977532111111111122 4677665 6999988999999998 3221 111 1110
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--CeeEEEEEeecCCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--NFAVVCFRVLPSASGL 415 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~~~~v~f~~~~~~~~~ 415 (486)
.+ .+-....|++.++...+..-.-++..++..+...+|.+.|+++. .+.++.+- ..-++.+.+.++.
T Consensus 279 -----Hg--STfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~--- 348 (404)
T COG4992 279 -----HG--STFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY--- 348 (404)
T ss_pred -----cc--CCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc---
Confidence 00 01112455555554444222233566777778888888887652 22233222 2345556655431
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
....+.+.+.++|.+.... +..++|+.. ....+++|||..+++|+++++.+..
T Consensus 349 -----------~a~~~~~~~~~~gvL~~~a----~~~ViR~~P-pL~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 349 -----------RARDIVRALREEGVLVLPA----GPNVIRFLP-PLVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred -----------cHHHHHHHHHHCCeEEecC----CCCeEEecC-CccCCHHHHHHHHHHHHHHHHHhhh
Confidence 2356677788889754432 345899987 5688999999999999999886653
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-12 Score=129.10 Aligned_cols=316 Identities=12% Similarity=0.040 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
...+.++.+.|++++.-..+ ..+|+++||+||..|+.+||... | ++.+|......|-+..-+...
T Consensus 85 ~~~~~~la~~L~~~~~~~~~-------~v~f~~SGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~~s~ 149 (433)
T PRK08117 85 YESILKLAEELAEITPGGLD-------CFFFSNSGAEAIEGALKLAKHVT-------K-RPYIISFTGCFHGRTLGALSV 149 (433)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCcHHHHHHHHHHHHHHhc-------C-CCeEEEECCCcCCcCHHHHhh
Confidence 34555666778887731111 57889999999999999998752 1 334555566667665444333
Q ss_pred cCC--------C--CCCeEEEecCCCCCcc------------cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC-
Q 038818 192 AGI--------D--PKNFRAIKTTKSSSFT------------LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP- 248 (486)
Q Consensus 192 ~G~--------g--~~~v~~v~~d~~~~~~------------~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp- 248 (486)
.+- + ...+..+|... .++ -|+++|++.++.... +..+.+|++.......|.+-|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~aavi~Epi~~~~G~~~~~ 226 (433)
T PRK08117 150 TTSKSKYRKYYQPLLGSVYQAPYPY--CDRCPKGEDPEVCFLECLRDLESLFKHQVT-PEEVAAVIIEPVLGEGGYIVPP 226 (433)
T ss_pred cCCCccccccCCCCCCCcEEeCCCc--cccccccCchhHHHHHHHHHHHHHHHhccC-CCcEEEEEECCeeCCCCCccCC
Confidence 221 0 11344555431 111 256777777764211 234567888877788898888
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCc
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
+++|.++|++||+++++|.+|.|+......+.....++ ..|. ....|.++..+++|.++.+++ .. +.+...
T Consensus 227 ~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv-~pDi--~t~sK~lg~G~pigav~~~~~-i~-~~~~~~- 300 (433)
T PRK08117 227 KSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGV-VPDI--MTIAKGIASGLPLSAVVASKE-LM-EQWPLG- 300 (433)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCC-CCCE--eehhhhccCCCcceeEEEcHH-HH-hhccCC-
Confidence 99999999999999999999986322111111001122 2455 456899987677888877643 22 222110
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecC-CC
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAP-RN 400 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~-~~ 400 (486)
... .+. ...++.+.+ +++.+..+ ++.++..++.+++++.|+++. .+.++.. +.
T Consensus 301 --~~~-------------~T~----~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg 358 (433)
T PRK08117 301 --SHG-------------TTF----GGNPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVLKEKHPVIGDVRG 358 (433)
T ss_pred --CCC-------------CCC----CcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 000 011 112333333 34433222 455666777777777776531 1111111 11
Q ss_pred -eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 401 -FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 401 -~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..++.+.+.++.. .. .......+.+.+.+.|+++.... ....++|+++. ...|+++|+++++.|.+++
T Consensus 359 ~Gl~~gi~~~~~~~-------~~-~~~~~~~~~~~l~~~Gv~~~~~g--~~~~~lRl~p~-~~~t~~~i~~~~~~l~~~l 427 (433)
T PRK08117 359 IGLMIGIEIVDPDG-------EP-DGDAVEKILDKCLEKGLLFYLCG--NAGNVLRMIPP-LTVTKEEIDEGLDILDEAL 427 (433)
T ss_pred CCcEEEEEEecCCC-------Cc-chHHHHHHHHHHHHCCCEEeecC--CCCCEEEEeCC-ccCCHHHHHHHHHHHHHHH
Confidence 1233444432210 00 02345567788888898543321 12468999973 5678889999999999998
Q ss_pred HHHhh
Q 038818 480 DGILA 484 (486)
Q Consensus 480 ~~l~~ 484 (486)
+++.+
T Consensus 428 ~~~~~ 432 (433)
T PRK08117 428 TEYEA 432 (433)
T ss_pred HHHhc
Confidence 87754
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-12 Score=132.31 Aligned_cols=322 Identities=11% Similarity=0.037 Sum_probs=188.7
Q ss_pred HHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcce--EEcCCchHH--HHHHHHHHHHHHHH
Q 038818 89 FLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGG--VIQGTTCEA--ILCTLAAARDQILN 163 (486)
Q Consensus 89 ~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~--~~t~ggt~a--~~~al~~a~~~~~~ 163 (486)
.+.+.+...++.+ ...|....+..++.+.+.+|+.+..+.+... ... .-+.+|+.+ ...++.....
T Consensus 70 ~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~-----~~i~~~~i~~g~Ga~~l~~~~~~~~~---- 140 (423)
T PLN02397 70 VVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKE-----NRVATVQCLSGTGSLRLGAEFLARFY---- 140 (423)
T ss_pred HHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhc-----CeeEeeecccchHHHHHHHHHHHHhC----
Confidence 3444433332323 2357777778888888888885543221100 011 113333323 3333333221
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI 243 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~ 243 (486)
+++.|+++++++......++..|. +++.+|....+++.+|++.+++.+.... ....+++.+.++|||
T Consensus 141 -------pGd~Vlv~~P~y~~y~~~~~~~g~---~~~~v~l~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~P~NPT 207 (423)
T PLN02397 141 -------PGSTIYIPNPTWGNHHNIFRDAGV---PVRTYRYYDPKTRGLDFDGLLEDLKAAP---DGSFVLLHACAHNPT 207 (423)
T ss_pred -------CCCEEEEeCCCchhHHHHHHHcCC---eEEEeecccCcCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCC
Confidence 667899999999999999999999 9999998322247899999998886431 124678888899999
Q ss_pred cccC---CchHHHHHHHHhCceEEeeccccchhccCc--cchh--hhcCCCCCCce-eeccccccCC-CCcceEEE--ee
Q 038818 244 TTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICP--EFRH--FIDGIEGADSF-SLNAHKWFFT-TLDCCCLW--VK 312 (486)
Q Consensus 244 G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~--~~~~--~~~~~~~aDsi-~~~~hK~l~~-p~~~g~~~--~~ 312 (486)
|.+- .+++|+++|++||+|+++|.+|........ .... .+... .-..| ..++.|.++. ..-+|+++ ..
T Consensus 208 G~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vI~~~SfSK~~~~~G~RvG~~v~~~~ 286 (423)
T PLN02397 208 GVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVED-GHEILVAQSYAKNMGLYGERVGALSVVCK 286 (423)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhc-CCcEEEEEECcccCCCccccceEEEEEeC
Confidence 9984 477889999999999999999977543110 0111 11111 11234 5578999984 56788875 33
Q ss_pred CchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch--------HHHHHHHHHHHHHHHHHH
Q 038818 313 NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV--------ANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 313 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~--------~g~~~~~~~~~~~a~~l~ 384 (486)
+++.+............. ...+ ...+..+++...+.. +.++++.++..+.++.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 287 SADVAVRVKSQLKLIARP--------------MYSN---PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLY 349 (423)
T ss_pred CHHHHHHHHHHHHHHHhc--------------ccCC---CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222111000000000 0000 112233333333322 125667778888999999
Q ss_pred HHHhCCCC----eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEec
Q 038818 385 ELVGGDNR----FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVG 459 (486)
Q Consensus 385 ~~L~~~~~----~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~ 459 (486)
+.|+++ + +++. .|+.+++.|--.+ .+ +.++|. +.|+. +.+ .+ |+++.
T Consensus 350 ~~L~~~-~~~~~~~~~-~p~gg~fl~~~l~--------------~~----~~~~Ll~~~~V~-v~~-----~~--Ri~~~ 401 (423)
T PLN02397 350 DALEAR-GSPGDWSHI-TKQIGMFSFTGLN--------------KE----QVDRMTKEYHIY-MTR-----DG--RISMA 401 (423)
T ss_pred HHHHhc-CCCCCCCcc-cCCceEEEecCCC--------------HH----HHHHHHHhCCEE-ECC-----CC--eEEEe
Confidence 999887 4 5543 4555666553211 22 344444 34654 331 11 99985
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~ 480 (486)
..++++++++++.|+++++
T Consensus 402 --~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 402 --GLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred --eCCHHHHHHHHHHHHHHHh
Confidence 3577799999999999875
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-13 Score=130.06 Aligned_cols=149 Identities=13% Similarity=-0.010 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
.+++++++.+|. .+++|+|+++++...+... . +++.|++..++|+.+..+++..|+
T Consensus 44 ~l~~~ia~~~~~----------~I~vt~G~~~al~~~~~~~-~-----------~gd~vlv~~P~y~~~~~~~~~~g~-- 99 (311)
T PRK08354 44 WLEEEFSKLFGE----------PIVITAGITEALYLIGILA-L-----------RDRKVIIPRHTYGEYERVARFFAA-- 99 (311)
T ss_pred HHHHHHHHHHCC----------CEEECCCHHHHHHHHHHhh-C-----------CCCeEEEeCCCcHHHHHHHHHcCC--
Confidence 356778888772 5789999999876544221 1 466788899999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchh
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+++.+ .+|++.|++++++ +.+++++.++||||.+-+ +++|.++|+++|+|+++|++|..+.
T Consensus 100 -~~~~~--------~~d~~~l~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~ 163 (311)
T PRK08354 100 -RIIKG--------PNDPEKLEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFV 163 (311)
T ss_pred -EEeec--------CCCHHHHHHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcc
Confidence 77654 3578888887652 125778889999999865 6677788899999999999997654
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEe
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWV 311 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~ 311 (486)
... . . .. ..--.+..++.|.++.| .-+|+++.
T Consensus 164 ~~~-~--~-~~--~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 164 KKP-E--S-PE--GENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred ccc-c--c-cC--CCcEEEEeccHhhcCCccceeeeeee
Confidence 311 1 0 00 11124456689999844 56787776
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-13 Score=130.25 Aligned_cols=278 Identities=13% Similarity=0.031 Sum_probs=173.6
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++++++.+|.+.. ...++|+|+++++. .+..+.. ++. |++...++.....+++..|.
T Consensus 56 ~~L~~~ia~~~~~~~~------~~I~i~~Gs~e~i~-~l~~~~~-----------~g~-v~v~~P~y~~y~~~~~~~g~- 115 (339)
T PRK06959 56 DGLAACAARYYGAPDA------AHVLPVAGSQAAIR-ALPALLP-----------RGR-VGIAPLAYSEYAPAFARHGH- 115 (339)
T ss_pred HHHHHHHHHHhCCCCc------ccEEECcCHHHHHH-HHHHhcC-----------CCe-EEEcCCCcHHHHHHHHHCCC-
Confidence 5677889999999742 16888999888764 3322211 444 55677888889999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHH---HHHhCceEEeeccccch
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDI---AKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i---~~~~g~~lhvD~a~g~~ 272 (486)
+++.+|.+. +.+.+ .. .+++++.++||||.+-+.+++.++ |++++.++++|.+|..+
T Consensus 116 --~~~~v~~~~--------~~~~~----~~------~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~ 175 (339)
T PRK06959 116 --RVVPLDEAA--------DTLPA----AL------THLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADT 175 (339)
T ss_pred --EEEeecccc--------hhccc----cC------CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccC
Confidence 888887652 12211 11 257888899999999776655554 66789999999999764
Q ss_pred hccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
.. .+...... ..++ -.+.-++.|.++ ...-+|+++.. ++..........++.
T Consensus 176 ~~-~~s~~~~~-~~~~-vi~l~SfSK~~gl~GlRiGy~v~~-~~li~~l~~~~~~~~----------------------- 228 (339)
T PRK06959 176 LP-AASLAAHT-DRPG-LVVLRSVGKFFGLAGVRAGFVLAA-PALLAALRDALGAWT----------------------- 228 (339)
T ss_pred CC-cccchhcc-CCCC-EEEEecChhhcCCcchheEEEecC-HHHHHHHHHhcCCCC-----------------------
Confidence 31 11111111 1111 145667899998 44567887764 444332222111110
Q ss_pred CCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 352 FRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 352 ~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
...+...++...+.. +..++..++..+.++++.+.|+++ ++++. +..+.+.++.. . ...
T Consensus 229 vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~-~----------------~~~ 288 (339)
T PRK06959 229 VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP-R----------------AAA 288 (339)
T ss_pred CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC-C----------------HHH
Confidence 122333344444422 345566677777888999999887 67654 22222233321 1 245
Q ss_pred HHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 038818 431 LLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILATS 486 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~~~ 486 (486)
+.+.|.++|+.+ .. +....++|+++. .+.++.++++++|+++.+.|.+.|
T Consensus 289 l~~~l~~~GI~v-r~--~~~~~~lRisi~---~~~~e~~~l~~al~~~~~~~~~~~ 338 (339)
T PRK06959 289 LHAALARRGIWT-RY--FAPPPSVRFGLP---ADEAEWQRLEDALAECVPTLAAAS 338 (339)
T ss_pred HHHHHHhCCeEE-EE--CCCCCeEEEECC---CCHHHHHHHHHHHHHHHHHHhhcc
Confidence 677788889754 32 233458999973 255699999999999998877543
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=130.81 Aligned_cols=278 Identities=13% Similarity=0.080 Sum_probs=157.4
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCC------CeEEEecCCCCCccc
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPK------NFRAIKTTKSSSFTL 212 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~------~v~~v~~d~~~~~~~ 212 (486)
-.++++|||+||..|+..+|... + ++.+|......|-+...++...|.... .+..++.. . ..
T Consensus 86 ~~~~~~SGseA~~~Al~~ar~~~-------~-~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~ 153 (375)
T PRK04260 86 LAFFCNSGAEANEAAIKIARKAT-------G-KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA---I-FN 153 (375)
T ss_pred EEEEcCccHHHHHHHHHHHHHhc-------C-CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe---C-CC
Confidence 36899999999999999997641 0 334555566778776666655443100 01111110 0 24
Q ss_pred CHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCC
Q 038818 213 TPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEG 288 (486)
Q Consensus 213 d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~ 288 (486)
|+++|++.+++. ..+|++....+++|.+.| +++|.++|+++|+++++|++|.++..-...+.....++ .
T Consensus 154 dl~~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~-~ 226 (375)
T PRK04260 154 DLNSVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI-E 226 (375)
T ss_pred CHHHHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC-C
Confidence 899999887532 346788888888888754 89999999999999999999976322111111111223 3
Q ss_pred CCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHH
Q 038818 289 ADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVAN 368 (486)
Q Consensus 289 aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g 368 (486)
-|.+ +..|.++..+..|.++.+++ . .+.+... .+. .+. .+.......+..++..+..+.
T Consensus 227 pdi~--t~sK~l~~G~~ig~~~~~~~-~-~~~~~~~-~~~---------------~t~-~~~~~~~~aa~a~l~~~~~~~ 285 (375)
T PRK04260 227 PDIF--TLAKGLANGVPVGAMLAKSS-L-GGAFGYG-SHG---------------STF-GGNKLSMAAASATLDIMLTAG 285 (375)
T ss_pred CCEE--EecccccCCcceEEEEEcHH-H-HhhcCCC-CCC---------------CCC-CcCHHHHHHHHHHHHHHHhhH
Confidence 5644 56899886567898888754 2 2222110 000 011 011112223333343332222
Q ss_pred -HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee
Q 038818 369 -LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM 447 (486)
Q Consensus 369 -~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 447 (486)
.++..+....+.+.+.+.+.+.+.+.-+. .....+.+.+... ..++.+++.++|+.+. +.
T Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~----------------~~~~~~~l~~~Gi~v~-~~- 346 (375)
T PRK04260 286 FLEQALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTAD----------------LSQLVEAARDKGLIVL-TA- 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecCc----------------HHHHHHHHHhCCCEEe-cC-
Confidence 22333333334444444444443322221 1334445554211 2467777888898543 22
Q ss_pred ECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 448 VAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 448 ~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+...+|+++. ...+++||+++++.|+++
T Consensus 347 --~~~~lR~~~~-~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 347 --GTNVIRLLPP-LTLTKEEIEQGIAILSEV 374 (375)
T ss_pred --CCCEEEEcCC-CccCHHHHHHHHHHHHHh
Confidence 3467999984 466788999999999875
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-13 Score=129.48 Aligned_cols=288 Identities=21% Similarity=0.238 Sum_probs=189.5
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-- 184 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-- 184 (486)
..|....+|+. ++.|=|.+ .++.+++|..|+..++..... +++.|+++...+..
T Consensus 61 ~nPT~~~lE~~----~a~LEg~~---------~~~afsSGmaAI~~~~l~ll~-----------~GD~vl~~~~~YG~t~ 116 (396)
T COG0626 61 GNPTRDALEEA----LAELEGGE---------DAFAFSSGMAAISTALLALLK-----------AGDHVLLPDDLYGGTY 116 (396)
T ss_pred CCccHHHHHHH----HHHhhCCC---------cEEEecCcHHHHHHHHHHhcC-----------CCCEEEecCCccchHH
Confidence 35555666654 56665543 568888888777666555443 46667777666544
Q ss_pred --HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHH-HHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCc
Q 038818 185 --LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDL-DIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSI 261 (486)
Q Consensus 185 --~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~-~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~ 261 (486)
+.+..+..|+ ++.+++. .|.+++++++.+ ++ .+|.+..++||+..+.||++|+++|+++|+
T Consensus 117 ~~~~~~l~~~gi---~~~~~d~-------~~~~~~~~~~~~~~t------k~v~lEtPsNP~l~v~DI~~i~~~A~~~g~ 180 (396)
T COG0626 117 RLFEKILQKFGV---EVTFVDP-------GDDEALEAAIKEPNT------KLVFLETPSNPLLEVPDIPAIARLAKAYGA 180 (396)
T ss_pred HHHHHHHHhcCe---EEEEECC-------CChHHHHHHhcccCc------eEEEEeCCCCcccccccHHHHHHHHHhcCC
Confidence 3444556677 7777653 255566666663 44 489999999999999999999999999999
Q ss_pred eEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 262 WVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
.++||.+++.+.+.-| +. -+||.+.-+..|++++.-. .|+++.+++......+.....++
T Consensus 181 ~vvVDNTfatP~~q~P-L~------~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~----------- 242 (396)
T COG0626 181 LVVVDNTFATPVLQRP-LE------LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANT----------- 242 (396)
T ss_pred EEEEECCcccccccCh-hh------cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhc-----------
Confidence 9999999988765443 11 1799999999999997643 55555555544332111110111
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cCC----------------Cee
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-APR----------------NFA 402 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~----------------~~~ 402 (486)
+--.....+|+.++ |.+-+.-++++..++|..+.+.|+++|.++-+ .|. ..+
T Consensus 243 ---------G~~l~p~dA~l~lR--GlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg 311 (396)
T COG0626 243 ---------GAVLSPFDAWLLLR--GLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGG 311 (396)
T ss_pred ---------CCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCce
Confidence 11234556688777 66888899999999999999999999988644 331 357
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc------CcE--EEeee---eE----------C--CEeEEEEEec
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINAS------GQL--YVSHG---MV----------A--GIYFIRFAVG 459 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~--~~~~~---~~----------~--~~~~lR~~~~ 459 (486)
+++|.+... +...++.+.|.-- |-+ .+.+. .. . ..+.+|++++
T Consensus 312 ~~Sf~l~~~--------------~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG 377 (396)
T COG0626 312 LFSFELKNE--------------EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG 377 (396)
T ss_pred EEEEEeCCh--------------HHHHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEec
Confidence 889988741 2234455543110 110 11111 00 0 2568999995
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~l 482 (486)
- ||++.+++.|++.++.+
T Consensus 378 l-----Ed~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 378 L-----EDVEDLIADLEQALAKA 395 (396)
T ss_pred C-----CCHHHHHHHHHHHHHhh
Confidence 3 37888888888877654
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-12 Score=130.62 Aligned_cols=332 Identities=14% Similarity=0.079 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
+..+.++.+.|.+++.-... ...+|+++||+||..|+.+||..... .|..+ ++.+|......|-+..-++..
T Consensus 132 ~~~~~~lae~L~~~~~~~~~------~~v~f~~SGsEA~e~AlKlAr~~~~~-~g~~~-r~~iI~~~~~yHG~t~~a~sl 203 (504)
T PLN02760 132 TKPSLDLAKELLEMFTARKM------GKVFFTNSGSEANDTQVKLVWYYNNA-LGRPN-KKKFIARSKSYHGSTLISASL 203 (504)
T ss_pred cHHHHHHHHHHHhhcCCCCC------CEEEEeCChHHHHHHHHHHHHHHHHh-cCCCC-CcEEEEECCCccCChHhhhhc
Confidence 44455566777777532111 15788999999999999999865311 11111 345666676778776555554
Q ss_pred cCCC---------CCCeEEEecCCCCCcc-------------cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC-
Q 038818 192 AGID---------PKNFRAIKTTKSSSFT-------------LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~~-------------~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp- 248 (486)
.|.. ...+..++.+. .++ ...++|++++... ....+.+|++.......|.+-|
T Consensus 204 sg~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~ 279 (504)
T PLN02760 204 SGLPALHQKFDLPAPFVLHTDCPH--YWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPP 279 (504)
T ss_pred cCChhhccCCCCCCCCcEEeCCCc--ccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCC
Confidence 4431 11122333211 011 1124577666431 1234567787777777788888
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCC
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~ 324 (486)
+++|.++|++||++|++|+++.|+.....-+.....++ ..|.+++ -|.++..+ +.|.++++++ . .+.+...
T Consensus 280 ~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gK~lggG~~PigAv~~~~~-i-~d~~~~~ 354 (504)
T PLN02760 280 ATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNI-KPDLVSL--AKALSSAYMPIGAVLVSPE-I-SDVIHSQ 354 (504)
T ss_pred HHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCC-CCcEEEe--cccccCCccccceEeecHH-H-Hhhhhcc
Confidence 99999999999999999999966533222222112244 4787665 68887653 5777777643 2 2233211
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCee
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFA 402 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~ 402 (486)
.+.... +....+-....+.+.+++..+..-.-+++.++..++.++|++.|+++....++.. -...
T Consensus 355 ~~~~~~-------------~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl 421 (504)
T PLN02760 355 SNKLGS-------------FAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGL 421 (504)
T ss_pred cccccC-------------cccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCce
Confidence 000000 0000111123344444444331111124677888888888888876532222211 1123
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++.+.+....... + .......+...+.+.+.++|++... .+ ..+|++. ....|++|||+++++++++++.+
T Consensus 422 ~~gie~~~~~~~~-~--~~~~~~~~~~~i~~~~~~~Gvl~~~----~g-~~lrl~P-pl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 422 ILGTEFVDNKSPN-D--PFPAEWGVGAYFGAECKKRGMLVRV----AG-DNIMMSP-PLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred EEEEEEecCCccc-c--cccchhHHHHHHHHHHHhCCcEEEe----cC-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555553321000 0 0001123456778888899985432 12 3588886 34678889999999999988765
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-11 Score=125.75 Aligned_cols=303 Identities=11% Similarity=0.027 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+.|++++..+.. ..+|+++|||||-.|+..||....++ | +..+|......|-...-+...
T Consensus 116 ~~~~~~lAe~L~~~~p~~~~-------~v~f~~SGsEA~e~AlklAr~~t~~~----g-r~~ii~~~~~yHG~t~~~ls~ 183 (442)
T TIGR03372 116 DPLRALLAKTLAALTPGKLK-------YSFFCNSGTESVEAALKLAKAYQSPR----G-KFTFIAASGAFHGKSLGALSA 183 (442)
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCCchHHHHHHHHHHHHHHhhc----C-CcEEEEECCCccCCCHHHhhc
Confidence 44455667778887643222 57899999999999999999763211 1 223444444455443333333
Q ss_pred cCCC---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 192 AGID---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
.|-. ...+..+|.+ |.+.+++.++.....+..+.+|++.......|.+-| +++|.++|++
T Consensus 184 t~~~~~~~~~~p~~~~~~~~p~~-------d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~ 256 (442)
T TIGR03372 184 TAKPAFRKPFMPLLPGFHHVAFG-------DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDE 256 (442)
T ss_pred cCCcccCCCCCCCCCCCEEeCCC-------CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHH
Confidence 2210 1123444432 678888888654444455677888877777888888 9999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
||+.+++|+++.|+.....-+.....++ ..|.++ ..|.++.. +++|.++.+++ .. +.+.. .++...
T Consensus 257 ~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDivt--~gK~lg~G~~Pigavv~~~~-i~-~~~~~-~~~~~~------- 323 (442)
T TIGR03372 257 FGALLILDEVQTGMGRTGKMFACEHEGV-QPDILC--LAKALGGGVMPIGATIATEA-VF-SVLFD-NPFLHT------- 323 (442)
T ss_pred cCCEEEEeecccCCCccccchhhhhcCC-CCCeee--ehhhhcCCcccceEEEecHH-HH-Hhhhc-cCcccc-------
Confidence 9999999999966422111111111233 478777 47988865 46788887643 22 22311 111111
Q ss_pred ccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----C-Ce-EEecCCCeeEEEEEe
Q 038818 338 VVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGGD----N-RF-EIVAPRNFAVVCFRV 408 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~-~~-~~~~~~~~~~v~f~~ 408 (486)
.+-....+.+.+ +++.+-.+ ++.++..++.++|++.|+++ | .+ ++- -...++.+.+
T Consensus 324 ----------~T~~gnp~~~Aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vR--G~Gl~~giel 388 (442)
T TIGR03372 324 ----------TTFGGNPLACAAALATINELLEK---NLPAQAAIKGDFLLDGFQQLAAEYPDLIIEAR--GKGLLMAIEF 388 (442)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe--cceEEEEEEe
Confidence 011123333333 44444333 34556667777777777553 3 11 121 2234555555
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.. +.....+.+.+.++|++. .+.. .+...+|+.. ....|++|||+++++|++.
T Consensus 389 ~~--------------~~~~~~i~~~l~~~Gvl~-~~~~-~~~~~lr~~P-pl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 389 RD--------------NEIGYAFAKELFQQNILV-AGTL-NNAKSIRIEP-PLTITIEQCALVIKAAKDA 441 (442)
T ss_pred CC--------------hHHHHHHHHHHHHCCcEE-eecC-CCCCEEEEEC-CcccCHHHHHHHHHHHHHh
Confidence 43 223456788888889753 3221 1235799988 4577888999999999875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-12 Score=130.43 Aligned_cols=329 Identities=16% Similarity=0.134 Sum_probs=207.8
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
++..+..++-.++.+||+++.|++.- .+-.++|..+-..+|.+.|..+..+ |.. .+-+.+++-.+|-..
T Consensus 575 eQaqGY~~lf~~Le~~Lc~iTG~D~~--------s~QPNsGA~GEYaGL~~IRaY~~~k-ge~--hRnvClIPvSAHGTN 643 (1001)
T KOG2040|consen 575 EQAQGYQQLFTELEKDLCEITGFDSF--------SLQPNSGAQGEYAGLRVIRAYLESK-GEG--HRNVCLIPVSAHGTN 643 (1001)
T ss_pred HHHhhHHHHHHHHHHHhheeecccce--------eecCCCCcccchhhHHHHHHHHHhc-cCC--cceeEEEeecccCCC
Confidence 45666788888899999999999742 1223455556667777777654332 222 567788888899999
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC-CchHHHHHHHHhCceEE
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD-PLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id-pl~~I~~i~~~~g~~lh 264 (486)
...+.+.|+ +|+.|.++. +|.+|+.+|++.-++...+ -..+.+|.++| .|.++ .|++++++.+++|=-+.
T Consensus 644 PASA~Magm---kvvpV~~~~--~G~id~~dLk~kaekh~~~---Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVY 714 (1001)
T KOG2040|consen 644 PASAAMAGM---KVVPVGCDA--NGNIDMVDLKAKAEKHKDN---LAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVY 714 (1001)
T ss_pred hhhHHhcCC---EEEEeeccC--CCCccHHHHHHHHHHhhhh---hheeEEecccc-cccccccHHHHHHHHHhcCCEEE
Confidence 999999999 999998886 6799999999988776543 34677888887 47775 59999999999999999
Q ss_pred eeccccch-hccCccchhhhcCCCCCCceeeccccccCCCCcce-----EEEeeCchHHHHHhcCCcccccCccCCCC-C
Q 038818 265 VDAAYAGS-ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCC-----CLWVKNPNALIKALSTNPEFLRNKASDSK-Q 337 (486)
Q Consensus 265 vD~a~g~~-~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g-----~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-~ 337 (486)
.|||.--. +.++.. |--++|....+.||+|..|.|.| .+.++.. + ++|+-...-.+. .
T Consensus 715 lDGANMNAqVGlc~p------Gd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H--L-------apfLP~HpVvs~~~ 779 (1001)
T KOG2040|consen 715 LDGANMNAQVGLCRP------GDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--L-------APFLPSHPVVSPGR 779 (1001)
T ss_pred ecCCCccceecccCC------ccccccceeecccceeeecCCCCCCCCCccchhhh--c-------cccCCCCCccCCCC
Confidence 99986322 122211 11289999999999998776544 4444432 1 233321110000 0
Q ss_pred ccCCCCccccCCCCC---Cch-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEE----EEEee
Q 038818 338 VVDYKDWQITLSRRF---RAL-KLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVV----CFRVL 409 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~---~~l-~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v----~f~~~ 409 (486)
..+-...+.-.+.++ ..| --|++++.+|..|+.+.-+-.+-+|+|+.++|+.+ .+++....-+.| .....
T Consensus 780 ~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r 857 (1001)
T KOG2040|consen 780 PEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLR 857 (1001)
T ss_pred CCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeech
Confidence 000000111111111 223 34999999999999999999999999999999986 455433222222 22222
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+... .. ..+ .-.+.++|..-|. -.|+. |.-.+.+-+-.+ ..-+.+++|++++++..+-+++.
T Consensus 858 ~fK~--~a---gie----avDvAKRL~DYgF--HaPTmswPV~gtLMIEPT-ESE~k~ElDRfcdAliSIreEI~ 920 (1001)
T KOG2040|consen 858 PFKK--TA---GIE----AVDVAKRLMDYGF--HAPTMSWPVAGTLMIEPT-ESEDKAELDRFCDALISIREEIA 920 (1001)
T ss_pred hhcc--cc---CCc----HHHHHHHHHhccC--CCCccccccCCceEeccC-ccccHHHHHHHHHHHHHHHHHHH
Confidence 2210 00 111 1234455555564 34432 222333444333 34466899999999988877654
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-12 Score=127.04 Aligned_cols=269 Identities=13% Similarity=0.016 Sum_probs=167.5
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
.+++.+++.+|.+ ++++|+|+++++..++. + . +++.|++...++..+...++.+|+
T Consensus 53 ~Lr~~ia~~~~~~---------~I~it~Gs~~al~~~~~-~-~-----------~gd~v~v~~P~y~~~~~~~~~~g~-- 108 (330)
T PRK05664 53 GLEAAARAYYGAP---------QLLPVAGSQAAIQALPR-L-R-----------APGRVGVLSPCYAEHAHAWRRAGH-- 108 (330)
T ss_pred HHHHHHHHHhCCC---------CEEECcCHHHHHHHHHH-c-c-----------CCCEEEEcCCChHHHHHHHHHcCC--
Confidence 4456677777742 58899999888755432 1 1 567788899999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchh
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+++.||++ +++++++ . +.+++++.++||||.+-+ +++|+++|+++|+++++|.+|..+.
T Consensus 109 -~~~~v~~~----------~~~~~~~-~------~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~ 170 (330)
T PRK05664 109 -QVRELDEA----------EVEAALD-S------LDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT 170 (330)
T ss_pred -eEEEechh----------hHhhhhc-C------CCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC
Confidence 99888763 3445443 1 125777889999999866 5666667789999999999996432
Q ss_pred ccCccchhhhcCCCCCC--ceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 274 CICPEFRHFIDGIEGAD--SFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aD--si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
..+... .+..-+ .+..++.|.++ ...-+|+++.. ++...........+.
T Consensus 171 -~~~s~~----~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~-~~l~~~~~~~~~~~~---------------------- 222 (330)
T PRK05664 171 -PQHSLA----ACAHRPGLIVLRSFGKFFGLAGARLGFVLAE-PALLRALAELLGPWT---------------------- 222 (330)
T ss_pred -Cccccc----ccccCCCEEEEeeccccccCCCcceEEEEeC-HHHHHHHHHhcCCCC----------------------
Confidence 111111 111222 45667899998 55678888864 333332211111110
Q ss_pred CCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 351 RFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
...+..+++...+. .+..++..+...+.++++.+.|++. +++.. ......+.++. +. ..
T Consensus 223 -~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~-~~~~~f~~~~~-~~----------------~~ 282 (330)
T PRK05664 223 -VSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH-GLTPA-GGCALFQWVRT-ED----------------AA 282 (330)
T ss_pred -CCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCcceEEEEec-CC----------------HH
Confidence 11222233333332 2334556677777888999999887 55421 11112233332 11 24
Q ss_pred HHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+.+.+.++|+.+. . +....++|+++.. ++++.++++++|+++.++
T Consensus 283 ~~~~~l~~~gi~v~-~--f~~~~~iRis~~~---~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 283 ALHEFLARRGILTR-L--FEQPASLRFGLPA---DEADWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHCCeEEE-E--CCCCCeEEEECCC---CHHHHHHHHHHHHHHHhh
Confidence 56667777888543 2 2234689999853 466899999999887654
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-11 Score=124.88 Aligned_cols=312 Identities=14% Similarity=0.078 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
++...++.+.|++++..+... ....+| +++||||+..|+..||... + ++.+|......|-...-+..
T Consensus 77 ~~~~~~lae~l~~~~~~~~~~----~~~~~f~~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~als 144 (412)
T TIGR02407 77 TEAKREFLETFNEIILKPRGL----DYKVQFPGPTGTNAVESALKLARKVT-------G-RSNVVSFTNAFHGMTLGSLS 144 (412)
T ss_pred cHHHHHHHHHHHHhccCccCC----CceEEEeCCCchHHHHHHHHHHhhhc-------C-CCeEEEECCCcCCchHHHHH
Confidence 455556677777765322211 002445 5899999999999999752 1 22334344445544333333
Q ss_pred HcCC---------CCCCeEEEecCCCCC-cccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc----CCchHHHHHH
Q 038818 191 IAGI---------DPKNFRAIKTTKSSS-FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV----DPLGPLCDIA 256 (486)
Q Consensus 191 ~~G~---------g~~~v~~v~~d~~~~-~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i----dpl~~I~~i~ 256 (486)
..|. ....+..+|...... ..-+++.+++.+++.......+.+|++.-.....|.+ +-+++|.++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc 224 (412)
T TIGR02407 145 VTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLC 224 (412)
T ss_pred hcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHH
Confidence 3321 112345555431000 0124777888886432111235567777666777774 2389999999
Q ss_pred HHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCC-CCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFT-TLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
++||+++++|+++.|+.....-+.....++ ..|.++++ |+++. .+++|+++++++. ..+. + ....
T Consensus 225 ~~~g~llI~DEV~tG~GRtG~~~a~~~~~v-~PDi~~~~--K~lg~~G~pigav~~~~~~---~~~~--~-~~~~----- 290 (412)
T TIGR02407 225 RRHDILLIVDDIQAGCGRTGTFFSFEPAGI-EPDIVCLS--KSISGYGLPLALTLIKPEL---DVWK--P-GEHN----- 290 (412)
T ss_pred HHcCCEEEEechhhCCCccchhHHhcccCC-CCCEEEec--hhccCCccceeEEEEchhh---hccC--C-CccC-----
Confidence 999999999999976422111111111233 56877764 99986 7789999987642 1221 0 0000
Q ss_pred CCccCCCCccccCCCCCCch---HHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHh----CCCCeEEecCCCeeEEEEE
Q 038818 336 KQVVDYKDWQITLSRRFRAL---KLWLVLRS-FGVANLRNFLRSHVRMAQLFQELVG----GDNRFEIVAPRNFAVVCFR 407 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l---~~~~~l~~-~g~~g~~~~~~~~~~~a~~l~~~L~----~~~~~~~~~~~~~~~v~f~ 407 (486)
.++ ....+ ...+++.. +..+ +..++..++.++|++.|+ +.+++..-......++.+.
T Consensus 291 --------~T~----~gnpl~~aaa~a~l~~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~ 355 (412)
T TIGR02407 291 --------GTF----RGNNLAFVTATAALEYYWSDD---AFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIE 355 (412)
T ss_pred --------CCC----CccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEE
Confidence 011 12233 22344443 3333 344555556666666654 3443322112223444555
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+.+ .....++.+.+.++|+++ .+.. .+...+|++. ....+++|++++++.|++++++
T Consensus 356 l~~--------------~~~~~~~~~~~~~~Gv~v-~~~~-~~~~~lr~~p-~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 356 CGD--------------GDLAGKIAKAAFENGLII-ETSG-PNDEVIKLLP-PLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred ecC--------------hHHHHHHHHHHHHCCCEE-eccC-CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHhC
Confidence 543 234567788888899854 3221 1235799988 5678889999999999988753
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-11 Score=122.52 Aligned_cols=316 Identities=11% Similarity=0.048 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
+..+.++.+.|++++.-+.. ...+|+++|||||..|+.+||... | ++.+|......|-...-+...
T Consensus 96 ~~~~~~lAe~L~~~~p~~~~------~~v~f~~SGsEA~e~AlklAr~~t-------g-r~~Ii~~~~~yHG~t~~~ls~ 161 (441)
T PRK05769 96 YEPAVELAERLVEIAPGGFE------KKVFFTNSGTESNEAAIKIARYHT-------G-RKYIIAFLGAFHGRTYGSLSL 161 (441)
T ss_pred CHHHHHHHHHHHHhCCCCCC------CEEEECCchHHHHHHHHHHHHHHh-------C-CCeEEEECCCcCCccHHHHHh
Confidence 44556677888887642111 157899999999999999999752 1 233444444455443333333
Q ss_pred cCC----------CCCCeEEEecCCCCC--cc-c--------CHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC--
Q 038818 192 AGI----------DPKNFRAIKTTKSSS--FT-L--------TPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP-- 248 (486)
Q Consensus 192 ~G~----------g~~~v~~v~~d~~~~--~~-~--------d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp-- 248 (486)
.|- ....+..+|....-. +. - +.+.+++.+.+....+..+.+|++.......|.+-|
T Consensus 162 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~ 241 (441)
T PRK05769 162 TASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPK 241 (441)
T ss_pred cCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCH
Confidence 321 012344555421000 00 1 123355423221111234667888777777888888
Q ss_pred --chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcc
Q 038818 249 --LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 249 --l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+++|.++|++||+++++|+++.|+.....-+.....++ ..|.+++ .|.++..++.|.++.+++- . ..+ ..
T Consensus 242 ~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv-~pDivt~--~K~l~~G~p~gav~~~~~i-~-~~~---~~ 313 (441)
T PRK05769 242 NFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV-EPDIITL--AKAIAGGLPLGAVIGRAEL-M-FLP---PG 313 (441)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCC-CCCEEEE--cccccCCcccEEEEEehhh-h-hcC---CC
Confidence 99999999999999999999976422111111111133 3587775 4888766778888876542 1 111 00
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--Cee
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--NFA 402 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~~~ 402 (486)
.. . .|+ ....+.+.+++..+.. +. +..++..++.++|++.|+++. .+.++... ...
T Consensus 314 ~~-~-------------~T~----~g~p~~~aaa~a~L~~l~~--~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~ 373 (441)
T PRK05769 314 SH-A-------------NTF----GGNPVAAAAALATLEELEE--GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGL 373 (441)
T ss_pred CC-C-------------CCC----CcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceE
Confidence 00 0 011 1133333333333311 11 566777888888888886531 12222111 233
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++.+.+.... .+...+....+.+.+.++|+++ .+ .+...+|++. ....|++|||+++++++++++++
T Consensus 374 ~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~Gil~-~~---~~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 374 MIGVELVKDR--------KEPDPKLRDKVLYEAFKRGLLL-LG---AGKSAIRIIP-PLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred EEEEEeccCC--------ccccHHHHHHHHHHHHhCCcEE-ec---CCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455443221 0001344567778888899753 22 2346799987 35678889999999999998765
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-11 Score=120.72 Aligned_cols=310 Identities=14% Similarity=0.086 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++...++.+.|.++.+.. + ..+|+++||+||..|+..||.....+ |....+..+|......|-...-+...
T Consensus 81 ~~~~~~la~~L~~~~~~~-~-------~v~f~~sGseA~e~AlklAr~~~~~~-g~~~~r~~ii~~~~~yHG~t~~~~s~ 151 (408)
T PRK04612 81 SAPPLKLAEELVTASRFA-E-------KVFLCNSGTEANEAAIKLVRKWASSQ-GRPADKRVIVTFRGSFHGRTLAAVTA 151 (408)
T ss_pred CHHHHHHHHHHHhhCCCC-C-------EEEEcCchHHHHHHHHHHHHHHHHhh-CCCCCCcEEEEECCCcCCccHHHHHh
Confidence 344455667777775432 2 57999999999999999999764221 11000223444454556443434433
Q ss_pred cCCCC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 192 AGIDP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 192 ~G~g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
.|-.. ..++.+|. -|++.|+++++. ..+.+|++.-.....|.+.| +++|.++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~-----~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~ 219 (408)
T PRK04612 152 TAQPKYQEGYEPLPGGFRYVDF-------NDVEALEAAMAG-----GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQ 219 (408)
T ss_pred cCCcccccCCCCCCCCceEcCC-------CCHHHHHHhhCC-----CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence 33210 11222221 278889888742 12444555443333344432 8999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
||+++++|+++.++.....-+.....++ ..|.++ ..|.++..+.+|.++.+++ . .+.+... . .
T Consensus 220 ~g~llI~DEv~tg~gr~G~~~a~~~~~~-~pdi~t--~~K~l~~G~piga~~~~~~-~-~~~~~~~---~-~-------- 282 (408)
T PRK04612 220 HDALLVLDEIQCGMGRTGTLFAHWQEQV-TPDIVT--LAKALGGGFPIGAMLAGPK-V-AETMQFG---A-H-------- 282 (408)
T ss_pred cCCEEEEeccccCCCcCCchhhhhhcCC-CCCEEE--EcchhcCCCceEEEEECHH-H-HhhhcCC---C-c--------
Confidence 9999999999976422111111111111 245444 4798886677888877643 2 2222210 0 0
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEec--CCCeeEEEEEeecCCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVA--PRNFAVVCFRVLPSASGL 415 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~--~~~~~~v~f~~~~~~~~~ 415 (486)
..++ ++.+....++..++..+-. .++.++..++.++|.+.|+++. .+.++. .....++.+.+.+..
T Consensus 283 ----~~t~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~--- 351 (408)
T PRK04612 283 ----GTTF-GGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAH--- 351 (408)
T ss_pred ----CCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCch---
Confidence 0011 1112222233334443322 3566777888888888886641 122221 122334455443211
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
......+.+.+.++|.++. + .+...+|++. ....+++|||++++.|++++.++.+
T Consensus 352 ---------~~~a~~i~~~l~~~Gvlv~-~---~g~~~lRl~P-pl~it~eeid~~l~~l~~~l~~~~~ 406 (408)
T PRK04612 352 ---------AGQAGAILDLAAEHGLLLL-Q---AGPDVLRFVP-ALNLTDAELADGLARLRLALADYVA 406 (408)
T ss_pred ---------hhHHHHHHHHHHHCCeEEe-e---CCCCEEEEcC-CccCCHHHHHHHHHHHHHHHHHHhh
Confidence 1234567778888897543 2 2446899987 5677899999999999999987654
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-11 Score=121.02 Aligned_cols=328 Identities=13% Similarity=0.028 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE-ecCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY-GSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~-~s~~~H~s~~~a~~ 190 (486)
.....++.+.|+++++-..+ ..+|+++||+||..|+.++|...... |.. .+.+|+ .....|-+..-++.
T Consensus 97 ~~~~~~lae~L~~~~p~~~~-------~v~f~~SGseA~e~AiklAr~~~~~~-g~~--~r~~ii~~~~~yHG~t~~~~s 166 (460)
T PRK12403 97 HPAVIELSELLFSLLPGHYS-------HAIYTNSGSEANEVLIRTVRRYWQVL-GKP--QKKIMIGRWNGYHGSTLAATA 166 (460)
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHHHHhh-CCC--CCcEEEEECCCcCcccHhhhh
Confidence 44455666778888753212 57999999999999999998753221 110 233333 33445766555555
Q ss_pred HcCCC--------CCCeEEEecCCC--CCcc--------cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 191 IAGID--------PKNFRAIKTTKS--SSFT--------LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 191 ~~G~g--------~~~v~~v~~d~~--~~~~--------~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
..|.. ...+..+|.... ..+. .+.++|++.+.+.. ...+.+|++.......|.+-|
T Consensus 167 ~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~--~~~iaavI~Epv~g~gG~~~~~~~y 244 (460)
T PRK12403 167 LGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELG--AENVAGFVAEPFQGAGGMIFPPESY 244 (460)
T ss_pred cCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhC--CCceEEEEEccccCCCCCccCCHHH
Confidence 54431 012344442210 0001 11355666554321 123556777777777788877
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCc-c
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNP-E 326 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~-~ 326 (486)
+++|.++|++||+.|++|++++|+.-...-+....-++ ..|.++ .-|.++..+ ++|.++++++ . .+.+.... .
T Consensus 245 l~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv-~PDiv~--~gK~lggG~~Piga~v~~~~-i-~~~~~~~~~~ 319 (460)
T PRK12403 245 WPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGF-EPDTLS--IAKGLTSGYVPMGGLVLSKR-I-AEALVEQGGV 319 (460)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCC-CCCeEE--EcccccccccceEEEEECHH-H-HHHHhcCCCc
Confidence 99999999999999999999976532221111111234 368887 579888665 6888887643 2 22332111 1
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHH-HHHHHHHHHHhCC-CCeEEecC--C
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHV-RMAQLFQELVGGD-NRFEIVAP--R 399 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~-~~a~~l~~~L~~~-~~~~~~~~--~ 399 (486)
++.. .+.....+.+.+ +|+.+-.+. ..++.. ++.++|++.|+++ ....++.. -
T Consensus 320 ~~~~-----------------~T~~gnPl~~Aaala~L~~i~~~~---l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG 379 (460)
T PRK12403 320 FAHG-----------------LTYSGHPVAAAVAIANLKALRDEG---VVTRVKDDTGPYLQRCLREVFGDHPLVGEVQG 379 (460)
T ss_pred cccC-----------------CCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhcCCCEEeEee
Confidence 1110 111223344433 444443332 345553 5666666666432 11112211 1
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
...++.+.+...... . ...........++.+.+.++|.+.... + ..+|++. ....|++|||++++++++++
T Consensus 380 ~Gl~~gie~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~Gll~~~~----~-~~~~l~P-pl~it~~eid~~~~~l~~al 450 (460)
T PRK12403 380 AGLVAALQFAEDKAT--R-KRFANENDLAWRCRTIGFEEGVIIRST----L-GRMIMAP-ALVAGRAEIDELVDKTRIAV 450 (460)
T ss_pred cceEEEEEEccCccc--c-ccccchhHHHHHHHHHHHhCCEEEEec----C-CEEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 233445544322100 0 000000123445667778889754321 1 2477765 34568899999999999999
Q ss_pred HHHhhc
Q 038818 480 DGILAT 485 (486)
Q Consensus 480 ~~l~~~ 485 (486)
+++.++
T Consensus 451 ~~~~~~ 456 (460)
T PRK12403 451 DRTARE 456 (460)
T ss_pred HHHHHH
Confidence 888654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-11 Score=122.64 Aligned_cols=335 Identities=12% Similarity=0.060 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+...++.+.+.+++.-+-+ ..+|+++||+|+..|+..||..... .|..+ ...+|......|-...-+...
T Consensus 94 ~~~~~~la~~l~~~~p~~~~-------~v~f~~sGseAve~AlklAr~~~~~-~g~~~-r~~ii~~~~~yHG~t~~a~s~ 164 (460)
T PRK06541 94 HPPAIELAERLAALAPGDLN-------RVFFTTGGSEAVESAWKLAKQYFKL-TGKPG-KHKVISRAIAYHGTTQGALAI 164 (460)
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEcCCcHHHHHHHHHHHHHHHHh-cCCCC-ccEEEEEcCcccCcchhhhcC
Confidence 34445566777777532212 5799999999999999999875321 11111 233444455556444333333
Q ss_pred cCCC---------CCCeEEEecCCCCC---cccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---
Q 038818 192 AGID---------PKNFRAIKTTKSSS---FTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP--- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~---~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp--- 248 (486)
.|.. ...+..+|....-. +.-+ ++.|++.++.. ....+.+|++....++.|.+-|
T Consensus 165 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~ 242 (460)
T PRK06541 165 TGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPG 242 (460)
T ss_pred cCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHH
Confidence 3221 11234444321000 1112 35667666532 1234556777766788899888
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCc-
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNP- 325 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~- 325 (486)
+++|.++|++||+.+++|+++.|+.....-+.....++ ..|.++ ..|.++..+ +.|.++.+++-. +.+....
T Consensus 243 yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv-~PDivt--~gK~l~~G~~pigav~~~~~i~--~~~~~~~~ 317 (460)
T PRK06541 243 YFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY-VPDIIT--CAKGITSGYSPLGAMIASDRLF--EPFLDGPT 317 (460)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCC-CCCEEE--ecccccCCccceeEEEEcHHHH--HHhhcCCC
Confidence 99999999999999999999965422221111111233 467776 579888655 678888765522 2222111
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec--CCCeeE
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA--PRNFAV 403 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~ 403 (486)
.+.. ..+-...++++.+++..+..-.-.+..++..++.++|.+.|+++....++. .....+
T Consensus 318 ~~~~-----------------~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~ 380 (460)
T PRK06541 318 MFLH-----------------GYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYF 380 (460)
T ss_pred cccc-----------------CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceE
Confidence 1110 011112334444444333111112355777888888888887653222211 122334
Q ss_pred EEEEeecCCC-CCCCCCCccchH-HHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 404 VCFRVLPSAS-GLGDGKANEGAN-ELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 404 v~f~~~~~~~-~~~~~~~~~~~~-~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+.+.+..+.. +.. -.....+ .....+.+.+.++|+++ .+. ..+...+|++.. ...|++|||+++++|++++++
T Consensus 381 ~~ie~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Gi~~-~~~-~~g~~~lrl~Pp-l~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 381 YGIELVKDKATKET--FTDDESERLLRGFLSPALFEAGLYC-RAD-DRGDPVVQLAPP-LISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred EEEEEecCcccccC--CcchhhhhhHHHHHHHHHHhCCeEE-Eec-CCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 4554432110 000 0000001 12235677888889753 331 124467999873 567888999999999999987
Q ss_pred Hhh
Q 038818 482 ILA 484 (486)
Q Consensus 482 l~~ 484 (486)
+.+
T Consensus 456 ~~~ 458 (460)
T PRK06541 456 AWA 458 (460)
T ss_pred HHh
Confidence 643
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-12 Score=127.25 Aligned_cols=233 Identities=15% Similarity=0.189 Sum_probs=168.0
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCC
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPK 197 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~ 197 (486)
..+..++.||.+.+| ++++|+|.||...+.+... +++.|++...+|-|+..+..+.|+
T Consensus 75 Aqe~aA~~fgAd~ty--------FvvNGTS~ank~vi~a~~~-----------~GD~VLvdRN~HKSi~~glilaGa--- 132 (557)
T COG1982 75 AQELAARVFGADHTY--------FVVNGTSTANKAVINAVLT-----------PGDKVLVDRNCHKSIHHGLILAGA--- 132 (557)
T ss_pred HHHHHHHHhCCCceE--------EEECCccHHHHHHHHhhcC-----------CCCEEEecCCccHHHHHHHHHcCC---
Confidence 348889999999875 8889988899766665544 788999999999999999999999
Q ss_pred CeEEEecCCCC----CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchh
Q 038818 198 NFRAIKTTKSS----SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 198 ~v~~v~~d~~~----~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
..+++....+. -+.++.+.+++++.+..... .+++++.+ |..|..-++++|.+.++++++|+.+|.+|+...
T Consensus 133 ~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~ 208 (557)
T COG1982 133 TPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---KLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHF 208 (557)
T ss_pred ceEEecCCCCccccccCCCCHHHHHHHHHhChhhh---eeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCcccc
Confidence 88877654322 25789999999887654321 35666655 558999999999999999999999999998877
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc-----hHHHHHhc----CCcccccCccCCCCCccCCCCc
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP-----NALIKALS----TNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~-----~~~~~~~~----~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
.+.+.... ..--..+|.++-|.||.+++--.++.+.+++. ..+..++. ..|.|.-
T Consensus 209 ~~~~~l~~-~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l--------------- 272 (557)
T COG1982 209 DFSPMLPE-SALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPL--------------- 272 (557)
T ss_pred cccccCcc-hhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHH---------------
Confidence 66654333 11113799999999999998889999999972 33333331 1111110
Q ss_pred cccCCCCCCchHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 345 QITLSRRFRALKL-WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 345 ~~~~sr~~~~l~~-~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
+.++-+ -..+...|..-.++.++...+.++.+++..+++++|+++.++
T Consensus 273 -------~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~ 321 (557)
T COG1982 273 -------MASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPE 321 (557)
T ss_pred -------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccc
Confidence 011111 011111244445566888899999999999999889988765
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-11 Score=122.76 Aligned_cols=322 Identities=13% Similarity=0.067 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+...++.+.+++++..... ...+|+++||+|+..|+..||... | ++.+|......|-...-+...
T Consensus 98 ~~~~~~la~~l~~~~p~~~~------~~v~f~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~al~~ 163 (443)
T PRK06058 98 YEGYVAVAEQLNRLTPGDHE------KRSALFNSGAEAVENAVKIARSYT-------G-RQAVVVFDHAYHGRTNLTMAL 163 (443)
T ss_pred CHHHHHHHHHHHHhCCCCCC------CEEEEeCCcHHHHHHHHHHHHHhh-------C-CCeEEEECCCcCcChHHHHhh
Confidence 34555677888888753211 146889999999999999998752 1 223444444455544444443
Q ss_pred cCC--------C--CCCeEEEecCCCCC----cccCH-HHHHHHHHHHHH--CCCccEEEEeecCCccccccCC----ch
Q 038818 192 AGI--------D--PKNFRAIKTTKSSS----FTLTP-ESLQAAIDLDIQ--AGLIPLFLCATVGTTAITTVDP----LG 250 (486)
Q Consensus 192 ~G~--------g--~~~v~~v~~d~~~~----~~~d~-~~L~~~l~~~~~--~g~~p~~vv~~~gtt~~G~idp----l~ 250 (486)
.+. + ...+..+|....-+ ...+. +.+++.++.-.+ .+..+.+|++.-.....|.+-| ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~ 243 (443)
T PRK06058 164 TAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLP 243 (443)
T ss_pred cCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHH
Confidence 321 1 11233343211000 00111 222222221111 1233556776665555566654 99
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+|.++|++||+.+++|+++.|+......+.....++ ..|.+++ -|.++..++.|.++.+++ .. +.+... ..
T Consensus 244 ~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv-~PDiv~~--gK~l~~G~Pi~av~~~~~-i~-~~~~~~--~~-- 314 (443)
T PRK06058 244 ALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGI-VPDLITT--AKGIAGGLPLSAVTGRAE-IM-DAPHPG--GL-- 314 (443)
T ss_pred HHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCC-CCCEEEE--cccccCCCccEEEEEcHH-HH-hhccCC--CC--
Confidence 999999999999999999977532211111111233 4688887 499887788999888654 22 222110 00
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEec--CCCeeEEEEE
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVA--PRNFAVVCFR 407 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~--~~~~~~v~f~ 407 (486)
..+-....+.+.+++..+..-.-.++.++..++.++|.+.|+++. ...++. .....++.+.
T Consensus 315 ----------------~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~ 378 (443)
T PRK06058 315 ----------------GGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIE 378 (443)
T ss_pred ----------------CCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEE
Confidence 011122444444444443211112456677777888888886531 112211 2233455555
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.++.. .....+...++.+.+.++|.+......+ ..++|+.. ....|++|||++++.|+++++++
T Consensus 379 ~~~~~~-------~~~~~~~~~~l~~~~~~~Gv~~~~~~~~--~~~lr~~P-pl~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 379 LVKPGT-------TEPDAELTKALAAAAHAAGVIVLTCGTY--GNVIRLLP-PLVIGDELLREGLDVLEAALADL 443 (443)
T ss_pred EecCCC-------CCCcHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEEC-CCccCHHHHHHHHHHHHHHHHhC
Confidence 543210 0011345667888888899754322211 25799986 45778889999999999988653
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-11 Score=120.71 Aligned_cols=321 Identities=13% Similarity=0.047 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
+...++.+.|.+++.-+.. .-.+|+++||+||-.|+..||... | ...+|-.....|-.-.-++.+.
T Consensus 99 e~~v~~ae~L~~~~p~~~~------~~~~f~~sGaeA~E~AiKiAr~~T-------g-r~~viaf~~afHG~T~galslT 164 (447)
T COG0160 99 EPYVELAEKLTALAPGSGL------KKVFFGNSGAEAVEAAIKIARAYT-------G-RPGVIAFDGAFHGRTLGALSLT 164 (447)
T ss_pred hhHHHHHHHHHHhCCcccC------CeEEecCCcHHHHHHHHHHHHHHh-------C-CCcEEEECCcccccchhhHHhc
Confidence 3344455666666543211 257999999999999999999874 1 2334445556665555555444
Q ss_pred C--------CC--CCCeEEEecCCC--CC--------cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 193 G--------ID--PKNFRAIKTTKS--SS--------FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 193 G--------~g--~~~v~~v~~d~~--~~--------~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
| .+ ...|+.+|.... +. ..-..+.+++.|......+..|.++++.......|.+.|
T Consensus 165 ~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~f 244 (447)
T COG0160 165 GSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGF 244 (447)
T ss_pred cCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHH
Confidence 2 22 124777776521 00 122345567766666656667889999998998898866
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
++++.++|++||+.+++|.++.|+..-..-+..--.++ ..|.+|+ .|.++...+.|.++.|.+-. ...++-.
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv-~PDivt~--aK~ig~G~Pl~avv~r~ei~-----~~~~g~~ 316 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVTL--AKSLGGGLPLSAVVGRAEIM-----DWPPGGH 316 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCC-CCCEEEe--cccccCCCceeEEeccHHhc-----ccCCccc
Confidence 89999999999999999999988643221111112234 5788886 48888888889888875421 1011100
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEecCCCe--eEEE
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD-NRFEIVAPRNF--AVVC 405 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~~--~~v~ 405 (486)
..+-+.+.+++.++++.+-.-.-+.+.++..++.++|++.|.++ ..+.++++.+. -++.
T Consensus 317 ------------------~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~g 378 (447)
T COG0160 317 ------------------GGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIG 378 (447)
T ss_pred ------------------CCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEE
Confidence 01112244444444444421122257788888888998888654 13444554432 3344
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..+..+.. ..+...+...++.+++.++|.+..+.+.. .+++|+.. -...+++++|.++++|.++++++
T Consensus 379 iE~v~d~~------t~~p~~~~~~~i~~~~~~~Glil~~~G~~--~nviRi~P-PL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 379 VELVKDRD------TKEPDAELAAKIVARAFERGLLLLTCGPH--GNVLRILP-PLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred EEEecCCC------CCCCCHHHHHHHHHHHHHcCCEEeccCCC--CcEEEEeC-CcccCHHHHHHHHHHHHHHHHhh
Confidence 44432210 01112467788999999999865554322 56799987 35668889999999999988764
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=129.79 Aligned_cols=265 Identities=20% Similarity=0.295 Sum_probs=178.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH-ccccC------CCCeEEEecCCCch
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE-IGREN------ISRLVVYGSDQTHS 183 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~-~~~~~------~~~~~v~~s~~~H~ 183 (486)
+.-+.-.+..|++.||.+.++-.|.+.....|...-..++..++..|....+.. .-.+| ...+++|+|...|.
T Consensus 163 an~i~Gdanh~fgnLF~FAdsqiycsdPaasfhadiadai~haVkLAikar~~~dhs~eG~~afaa~aaPt~YiS~alh~ 242 (838)
T KOG0630|consen 163 ANSISGDANHVFGNLFHFADSQIYCSDPAASFHADIADAIGHAVKLAIKARCGGDHSLEGGIAFAALAAPTFYISEALHM 242 (838)
T ss_pred HHhhccchHHHHHHHHhhcccccccCCchhhhhhhhhhHHHHHHHhhhhhccCCccccccccchHhhcCceEEEcccccH
Confidence 344555677899999988664322222222333222233333333333221111 00111 25689999999998
Q ss_pred H-HHHHHHHcCCCCCCeEEEec-CCCC-CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC
Q 038818 184 A-LQKAAQIAGIDPKNFRAIKT-TKSS-SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS 260 (486)
Q Consensus 184 s-~~~a~~~~G~g~~~v~~v~~-d~~~-~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g 260 (486)
- ..-+|+.+|+....+..++- |..+ .|+||...+++.|+++..+|..|+++++..|++..|..|-|-+|.++|++++
T Consensus 243 ~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi~kildi~eaha 322 (838)
T KOG0630|consen 243 DLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMILKILDICEAHA 322 (838)
T ss_pred HHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHHHHHHHHHHHhh
Confidence 6 45678999985433333321 2111 3699999999999999999999999999999999999999999999999997
Q ss_pred -ceEEeeccccchhccCccchhhhcC-CCCCCceeeccccccCCCCcceEEEeeCchHH-HHHhcCCcccccCccCCCCC
Q 038818 261 -IWVHVDAAYAGSACICPEFRHFIDG-IEGADSFSLNAHKWFFTTLDCCCLWVKNPNAL-IKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 261 -~~lhvD~a~g~~~~~~~~~~~~~~~-~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~ 337 (486)
+|+|.-| ++..++.|.+....+-. .+..||++.+.--|++.|-.--+++-|.-+-. ..+|...
T Consensus 323 kfWLHasG-haiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~aaSafesd------------- 388 (838)
T KOG0630|consen 323 KFWLHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGSAASAFESD------------- 388 (838)
T ss_pred heeEeecc-chhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccccchhcccC-------------
Confidence 9999986 33334434332222222 25789999999999999854433333321110 0011111
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
.-..++..++.+|.+++++|.+.+.++++....+...+.+.+.+.+++++++
T Consensus 389 --------pi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig 440 (838)
T KOG0630|consen 389 --------PILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIG 440 (838)
T ss_pred --------hHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEec
Confidence 1234567899999999999999999999999999999999999999999875
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-11 Score=122.92 Aligned_cols=329 Identities=11% Similarity=0.068 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
...+.++.+.|++++..+.. ..+|+++||+||..|+.++|...... +..+ +..+|......|-...-+...
T Consensus 91 ~~~~~~lae~L~~~~p~~~~-------~v~f~~SGseAve~AlKlar~~~~~~-g~t~-r~~il~~~~~yHG~t~~a~s~ 161 (460)
T PRK06105 91 HGPVIDLAEKLVAMAPVPMS-------KVFFTNSGSEANDTVVKLVWYYNNAL-GRPE-KKKIISRQRGYHGVTIASASL 161 (460)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEecCccCCcchhheec
Confidence 44555677788887743222 57899999999999999998643111 1111 233444555566544333332
Q ss_pred cCCC---------CCCeEEEecCCCCCcc-------------cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC-
Q 038818 192 AGID---------PKNFRAIKTTKSSSFT-------------LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~~-------------~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp- 248 (486)
.|.. ...+..+|... .++ -..++|++++... ....+..|++.......|.+-|
T Consensus 162 t~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~ 237 (460)
T PRK06105 162 TGLPNNHRSFDLPLDRILHTGCPH--YYRFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPP 237 (460)
T ss_pred cCCcccccccCCCCCCCEEcCCCc--ccccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCC
Confidence 2211 11233343321 001 1245677776431 1234567888777777788777
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~ 324 (486)
+++|.++|++||+.+++|+++.|+.....-+.....++ ..|.+++ .|.++.. .+.|.++.+++ . .+.+...
T Consensus 238 ~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v-~PDi~~~--gK~lggG~~P~~av~~~~~-i-~~~~~~~ 312 (460)
T PRK06105 238 KTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI-KPDILVM--SKQLSSSYQPLSAVLMNEK-V-YDPIADE 312 (460)
T ss_pred HHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC-CCCeeee--ecccccCcccceEEEEcHH-H-HHHHhcc
Confidence 99999999999999999999966533221111111233 4777765 6888765 36788887754 2 2233211
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-- 399 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-- 399 (486)
..... .+....+-...++.+.+ +|..+-. .+..++..++.++|++.|+++....++...
T Consensus 313 ~~~~~-------------~~~h~~T~~gnpl~~aaa~a~L~~i~~---~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG 376 (460)
T PRK06105 313 SGKIG-------------TFGHGFTASGHPVAAAVALENLAIIEE---RDLVGNAAERGARLQARLRALADHPLVGEVRG 376 (460)
T ss_pred cccCc-------------ccccCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 10000 00001111223444333 4444422 246678888888888888765322222111
Q ss_pred CeeEEEEEeecCCC-CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSAS-GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 400 ~~~~v~f~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
...+..+.+.++.. +.. ..........+...+.++|.++ .+. + ..+|++. ....|++|||++++.+.++
T Consensus 377 ~Gl~~gie~~~~~~~~~~----~~~~~~~a~~i~~~~~~~Gvl~-~~~---g-~~i~l~P-pl~it~~eid~~~~~l~~~ 446 (460)
T PRK06105 377 VGLIAAVELVADKATKTP----FEPPGKVGARANAAAHEHGVIS-RAM---G-DTLAFCP-PLIITAAQVDEMVDRFGRA 446 (460)
T ss_pred cceEEEEEEecCcccCCC----CCchhHHHHHHHHHHHHCCeEE-Eec---C-CEEEEEC-CCccCHHHHHHHHHHHHHH
Confidence 12344454432210 000 0001233456778888889754 331 2 4789886 3456889999999999999
Q ss_pred HHHHhh
Q 038818 479 LDGILA 484 (486)
Q Consensus 479 ~~~l~~ 484 (486)
++++.+
T Consensus 447 l~~~~~ 452 (460)
T PRK06105 447 LDDVAA 452 (460)
T ss_pred HHHHHH
Confidence 988754
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-12 Score=123.63 Aligned_cols=212 Identities=15% Similarity=0.112 Sum_probs=148.8
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch----HHHHHHHHcC
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS----ALQKAAQIAG 193 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~----s~~~a~~~~G 193 (486)
+.+.++.+-|.+ ..+.+++|..|...++..... .+..|++....+- -+.+....+|
T Consensus 82 le~~iaal~ga~---------~~l~fsSGmaA~~~al~~L~~-----------~g~~iV~~~~~Y~gT~~~l~~~~~~~g 141 (409)
T KOG0053|consen 82 LESGIAALEGAA---------HALLFSSGMAAITVALLHLLP-----------AGDHIVATGDVYGGTLRILRKFLPKFG 141 (409)
T ss_pred HHHHHHHHhCCc---------eEEEecccHHHHHHHHHHhcC-----------CCCcEEEeCCCcccHHHHHHHHHHHhC
Confidence 335578887765 357778877677666665542 3444555544432 2556666778
Q ss_pred CCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchh
Q 038818 194 IDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 194 ~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+ ....+.++ |++.+++++++++ .+|.+..++||++.+-||++|+++|+++|+.++||.+++++.
T Consensus 142 i---e~~~vd~~-------~~~~~~~~i~~~t------~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~ 205 (409)
T KOG0053|consen 142 G---EGDFVDVD-------DLKKILKAIKENT------KAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPY 205 (409)
T ss_pred c---eeeeechh-------hHHHHHHhhccCc------eEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccc
Confidence 8 77777654 6788888888754 489999999999999999999999999999999999998874
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
. ++.+.. +||.++-|..||+++.-. .|.+..+.++..++..... .++. --
T Consensus 206 ~-~~pL~l------GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~-~~lg--------------------~~ 257 (409)
T KOG0053|consen 206 N-QDPLPL------GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQ-EDLG--------------------WC 257 (409)
T ss_pred c-cChhhc------CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHH-HHhc--------------------CC
Confidence 3 322221 699999999999996643 5666666554443322111 1111 12
Q ss_pred CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 352 FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 352 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
..++.+|..+| |.+-+.-++++..+++..+++.|++.|.++-
T Consensus 258 ~~p~~~~ll~R--glktl~lRi~~~~ena~~~A~~Le~~~~v~k 299 (409)
T KOG0053|consen 258 EDPFDLFLLSR--GLKTLHLRINKHSENALKIALLLEAHPKVKK 299 (409)
T ss_pred CCHHHHHHHhc--CcchhhhhHHHHHHHHHHHHHHhhhCCceeE
Confidence 35566666665 5566677888999999999999999888874
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-11 Score=120.65 Aligned_cols=319 Identities=13% Similarity=0.071 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+.+.++.+.|+++++...+ ..+|+++||||+..|+..||... + ++.++-.....|-...-+...
T Consensus 83 ~~~~~~la~~L~~~~p~~~~-------~v~f~~sGsEAve~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~a~s~ 147 (443)
T PRK08360 83 PVEPLLLAEKLIEIAPGDNP-------KVSFGLSGSDANDGAIKFARAYT-------K-RRKILSYLRSYYGSTYGAMSL 147 (443)
T ss_pred cHHHHHHHHHHHHhCCCCCC-------EEEEcCCHHHHHHHHHHHHHHhc-------C-CCeEEEEeCCcCCcCHHHHHh
Confidence 34455666778887754322 57999999999999999998752 1 222333333445433333333
Q ss_pred cCCC---------CCCeEEEecCCCCC--cc--------cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 192 AGID---------PKNFRAIKTTKSSS--FT--------LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~--~~--------~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.|.. ...+..+|...... +. -+++.++++++... .+..+.+|++.-..+++|.+-|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~iAAvi~eP~~~~~G~~~~~~~~ 226 (443)
T PRK08360 148 TGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEV-YAEGVAALFAEPIQGDAGMIVPPEDY 226 (443)
T ss_pred cCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhcc-CCCCeEEEEECCccCCCCCcCCCHHH
Confidence 3321 12345555432100 00 12345566664321 1234667777777788898755
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.+++ .|.++..+..|+++.+++ .. +.+... .+.
T Consensus 227 l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~-~pDiitl--sK~l~~G~pigav~~~~~-i~-~~~~~~-~~~ 300 (443)
T PRK08360 227 FKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV-EPDIITL--GKPLGGGLPISATIGRAE-IM-DSLPPL-AHA 300 (443)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC-CCCEEEe--cccccCCceeEEEEEcHH-HH-hhhcCC-CCC
Confidence 89999999999999999999986432111111111133 3576665 899986667888887643 22 222110 000
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEec--CCCeeEEE
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVA--PRNFAVVC 405 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~--~~~~~~v~ 405 (486)
.+.. +.+.....+..++..+-.+ +..++..++.++|++.|+++. ...++. .....++.
T Consensus 301 ---------------~T~~-~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~g 361 (443)
T PRK08360 301 ---------------FTLS-GNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIG 361 (443)
T ss_pred ---------------CCCC-cCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEE
Confidence 0111 1111122333344444222 355677777777777775431 111111 12234455
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.+..+... .........++.+.+.++|.+ +.+. +...+|++. ....|++|||+++++++++++.+
T Consensus 362 ie~~~~~~~------~~~~~~~~~~~~~~l~~~Gi~-~~~~---~~~~lr~~P-~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 362 VDLVKDRET------KERAYEEAAKVVWRAWELGLI-VTFF---SGNVLRIQP-PLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred EEEecCCcc------cCccHHHHHHHHHHHHHCCeE-Eeec---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 555322100 000023345777888889974 3321 236799987 46778899999999999988765
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-11 Score=125.63 Aligned_cols=309 Identities=12% Similarity=0.039 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE-ecCCCchHHHHHHHHcC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY-GSDQTHSALQKAAQIAG 193 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~-~s~~~H~s~~~a~~~~G 193 (486)
..++.+.+++.+.-.+ ..++++|||+|+..|+.++|... ++..|+ .....|-.........+
T Consensus 90 ~~~lae~l~~~~~~~~--------~v~~~~sGseA~e~Alk~ar~~~---------gr~~ii~~~~~yhG~~~~~~~~~~ 152 (423)
T TIGR00713 90 EILLAKEIISRVPSVE--------MVRFVNSGTEATMSAVRLARGYT---------GRDKIIKFEGCYHGHHDALLVKAG 152 (423)
T ss_pred HHHHHHHHHHhCCccc--------EEEEeCCHHHHHHHHHHHHHHhh---------CCCEEEEEcCCCCCChhhhhcccc
Confidence 3445566777664322 57999999999999999998752 233344 34334443222222111
Q ss_pred CCCC----------------CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHH
Q 038818 194 IDPK----------------NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLC 253 (486)
Q Consensus 194 ~g~~----------------~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~ 253 (486)
.+.. .+..+| ..|+++|+++++.. +..+.+|++....+++|.+-| +++|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~ 222 (423)
T TIGR00713 153 SGAATLGLPTSPGVPEDFAKLTLVLP-------YNDLEALEEVFEEY---GEEIAGVIVEPVAGNMGVVPPKPEFLAGLR 222 (423)
T ss_pred CcccccCCCCCCCCCcccccceEEeC-------CCCHHHHHHHHHHc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence 1100 111121 12899999988742 123456666544444788866 78999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
++|++||+++++|++|.++ .....+.....++ ..|.++ ..|.++.....|.++.+++ .. +.+.....+..
T Consensus 223 ~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~-~pDi~t--~sK~l~~G~pig~v~~~~~-i~-~~~~~~~~~~~---- 292 (423)
T TIGR00713 223 ALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGV-EPDLTT--LGKIIGGGLPVGAFGGRRE-IM-ERLAPEGPVYQ---- 292 (423)
T ss_pred HHHHHhCCEEEEEcccccc-ccCcchhHHHhCC-Ccchhh--hhhhhcCCCceeeeeEHHH-HH-HhhCcCCCeee----
Confidence 9999999999999999765 2211111111222 346544 6899886567888887643 22 22321100000
Q ss_pred CCCCccCCCCccccCCCCCCchHHHH---HHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEee
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVL 409 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~ 409 (486)
..+-....+.+.+ ++..+..++ ++...+....+.+.|.+.+++. ++..-......++.+.+.
T Consensus 293 -------------~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~v~~~ 358 (423)
T TIGR00713 293 -------------AGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-GIPHTVNRVGSMFSLFFT 358 (423)
T ss_pred -------------ccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccEEEEEEe
Confidence 0000122333333 444332222 3333333334444555555555 333211123345554443
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
........ ...........++.+.+.++|++ +.+. +...+|++. ..++++|+++++.|.++++++
T Consensus 359 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~~~l~~---~~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 359 EEEVTNYA-DAKKSDTELFAKFFHEMLDKGVF-LPPS---QFEACFLSA---AHTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred cCCCCChh-hhhcccHHHHHHHHHHHHHCCeE-EecC---CccceeeEC---CCCHHHHHHHHHHHHHHHhhC
Confidence 21100000 00000012344677788888864 4433 123467765 357789999999999887653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-11 Score=122.33 Aligned_cols=323 Identities=12% Similarity=0.110 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
+...++.+.|++++.-+.+ ..+|+++||+|+..|+..||.....+ +..+ +..+|......|-...-+....
T Consensus 92 ~~~~~la~~L~~~~p~~~~-------~v~f~~sGseAve~AlklAr~~~~~~-g~~~-r~~ii~~~~~yHG~t~gals~~ 162 (445)
T PRK09221 92 PLAFELAERLAELAPGGLD-------HVFFTNSGSESVDTALKIALAYHRAR-GQGT-RTRLIGRERGYHGVGFGGISVG 162 (445)
T ss_pred HHHHHHHHHHHHhCCCCCC-------EEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEECCCcCccchhhhccC
Confidence 3445566778887642212 57899999999999999999764221 1111 2234444555553322222222
Q ss_pred CC-------C--CCCeEEEecCC-CCC--cc--------cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 193 GI-------D--PKNFRAIKTTK-SSS--FT--------LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 193 G~-------g--~~~v~~v~~d~-~~~--~~--------~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
|. + ...+..+|... ... +. -..++|++.++.. ....+.+|++....+..|.+-|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~y 240 (445)
T PRK09221 163 GIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGY 240 (445)
T ss_pred CChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHH
Confidence 21 0 01233444321 000 00 1235677766532 1134567888888888899888
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|.++|++||+++++|+++.|+.....-+.....++ ..|.+++ .|.++.. ++.|.++.+++ .. +.+...+.+
T Consensus 241 l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv-~PDi~~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~ 315 (445)
T PRK09221 241 LQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGV-TPDIITF--AKGLTNGAIPMGAVIASDE-IY-DAFMQGPEY 315 (445)
T ss_pred HHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCC-CCCEEEe--ccccccCcccceeeEEcHH-HH-HhhccCccc
Confidence 99999999999999999999866422111111111123 3576655 5777643 34677776643 32 233211111
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--Cee
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFA 402 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~ 402 (486)
...- ....|+. ...+.+. .+++.+-.+ ++.++..++.++|++.|+++.++..+.+. ..-
T Consensus 316 ~~~~---------~~~~T~~----~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl 379 (445)
T PRK09221 316 AIEF---------FHGYTYS----AHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGL 379 (445)
T ss_pred cccc---------ccccCCC----cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCce
Confidence 0000 0001111 2333333 344444223 45678888999999988775332222111 112
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+..+.+.+... .. .....++.+.+.++|+++ .. . ...+|++. ....|++|||++++.|+++++++
T Consensus 380 ~~~v~~~~~~~-------~~--~~~~~~~~~~~~~~Gv~~-~~---~-~~~lr~~P-pl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 380 VAGIELAPRPG-------AP--GARGYEAFMKCFEKGLLV-RY---T-GDTIALSP-PLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred EEEEEEecccc-------cc--cchHHHHHHHHHHCCeEE-ee---c-CCEEEEEC-CccCCHHHHHHHHHHHHHHHHhh
Confidence 23333332110 00 112346777788889753 22 1 24799987 45778899999999999998765
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-11 Score=120.09 Aligned_cols=326 Identities=11% Similarity=0.102 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
..+.++.+.+++++.-.- ....|+++||||+..|+..||...... +..+ +..+|......|-.-.-+....
T Consensus 89 ~~~~~la~~l~~~~p~~~-------~~v~f~~sGseA~e~AlklAr~~~~~~-g~~~-r~~ii~~~~~yHG~t~gals~t 159 (442)
T PRK13360 89 PKAFELANRIAEIAPGGL-------NHVFFTNSGSESVDTALKIALAYHRAR-GEGS-RTRLIGRERGYHGVGFGGISVG 159 (442)
T ss_pred HHHHHHHHHHHHhCCCCC-------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEEcCCcCCccHhhhhcc
Confidence 445566777888763111 157899999999999999999763211 1111 2233444444554322222222
Q ss_pred CC-------C--CCCeEEEecCCC-CC--cc--------cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 193 GI-------D--PKNFRAIKTTKS-SS--FT--------LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 193 G~-------g--~~~v~~v~~d~~-~~--~~--------~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
|. + ...+..+|.... .. +. -+.++|+++++.. .+..+.+|++.......|.+-|
T Consensus 160 g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~f 237 (442)
T PRK13360 160 GIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGY 237 (442)
T ss_pred CChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHH
Confidence 21 0 112344543310 00 00 0246777777532 1234667888877888899888
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|.++|++||+++++|+++.|+.....-+.....++ ..|.+++ .|.++.. +++|.++.+++ .. +.+...+..
T Consensus 238 l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDivt~--gK~l~gG~~P~gav~~~~~-i~-~~~~~~~~~ 312 (442)
T PRK13360 238 LQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGV-TPDLLTC--AKGLTNGAIPMGAVFVSSE-IH-DAFMQGPEA 312 (442)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CCceeee--eeccccCccceEEEEEcHH-HH-HHhhcCCcc
Confidence 99999999999999999999965422111111111233 4677655 7888754 45777777654 22 233211100
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC--eeEEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN--FAVVC 405 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~v~ 405 (486)
.. .-+...|+. +.+....++..+++.+-.+ ...++..++.++|++.|+++..+..+.+.. ..+..
T Consensus 313 ~~---------~~~~~~T~~-g~pl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~ 379 (442)
T PRK13360 313 GI---------EFFHGYTYS-GHPLACAAALATLDLYERE---GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGA 379 (442)
T ss_pred cc---------ccccCCCCC-CCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEE
Confidence 00 000001111 1111222333344444333 356677788888888887643222221111 11223
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.+.+... .. .....++..++.++|++. ... ...+|++. ....|++|||++++.|+++++++
T Consensus 380 ~~l~~~~~-------~~--~~~~~~~~~~l~~~Gvl~-~~~----~~~lr~~P-pl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 380 VELAPRDG-------KP--GKRAYEVFLKCFEKGLMI-RYT----GDILALSP-PLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred EEEecCCC-------Cc--chhHHHHHHHHHHCCcEE-Eec----CCEEEEeC-CCccCHHHHHHHHHHHHHHHHHh
Confidence 33322110 00 122356677788889753 221 24699987 45678889999999999998765
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-11 Score=123.54 Aligned_cols=314 Identities=11% Similarity=0.045 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
...+.++.+++++++.-. + ..++++||++||..|+..++... + ++.+|......|-...-+...
T Consensus 89 ~~~~~~la~~L~~~~~~~-~-------~v~~~~sGseA~e~Aik~a~~~~-------g-~~~ii~~~~~yHG~t~~~~~~ 152 (426)
T PRK00062 89 TELEVELAELVIELVPSI-E-------MVRMVNSGTEATMSAIRLARGYT-------G-RDKIIKFEGCYHGHADSLLVK 152 (426)
T ss_pred CHHHHHHHHHHHHhCCCC-C-------EEEEecCHHHHHHHHHHHHHHHh-------C-CCeEEEEcCccCCchhhhhhc
Confidence 344556777888776311 1 57899999999999999998752 1 233444455555443222222
Q ss_pred cCCCC---------CCeE-----EEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHH
Q 038818 192 AGIDP---------KNFR-----AIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLC 253 (486)
Q Consensus 192 ~G~g~---------~~v~-----~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~ 253 (486)
.|-+. .... .+.+. ..|+++|++.++.. +..+.+|++.......|.+-| +++|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~ 224 (426)
T PRK00062 153 AGSGAATLGLPDSPGVPEDFAKHTLTAP-----YNDLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLR 224 (426)
T ss_pred cCccccccCCCCCCCCCcccccceEEcC-----CCCHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHH
Confidence 11100 0000 01111 23889999988642 223557777777777898888 99999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCC-cccccCcc
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTN-PEFLRNKA 332 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~-~~y~~~~~ 332 (486)
++|++||+++++|++|.|+ .....+.....++ ..|.++ ..|.++..+++|.++.++ +.. +.+... ..+...
T Consensus 225 ~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~-~pDi~~--~gK~l~~G~p~ga~~~~~-~i~-~~~~~~~~~~~~~-- 296 (426)
T PRK00062 225 ELCDEHGALLIFDEVMTGF-RVALGGAQGYYGV-TPDLTT--LGKIIGGGLPVGAFGGRR-EIM-EQLAPLGPVYQAG-- 296 (426)
T ss_pred HHHHHcCCEEEEeechhcc-ccCCccHHHHhCC-CcchHh--hhhHhhCCCcceeeeEHH-HHH-HhhccCCCceecc--
Confidence 9999999999999999765 2221111111122 245444 469888656678776653 332 233211 111110
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEEe
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFRV 408 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~~ 408 (486)
..++.+....++..++..+..+ +..++..++.+++++.|++ + ++..-......++.+.+
T Consensus 297 -------------T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vrg~G~~~~i~l 359 (426)
T PRK00062 297 -------------TLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKA-GIPLTVNRVGSMFGLFF 359 (426)
T ss_pred -------------cCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEecceEEEEE
Confidence 0111112222333444444222 3556666677777777653 3 33321123345556555
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+....... ............+.+.+.++|++ +.+.. ...++++ ...+++||+++++.|+++++++
T Consensus 360 ~~~~~~~~~-~~~~~~~~~~~~i~~~l~~~Gv~-v~~~~---~~~~~~~---~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 360 TDEPVTNYA-DAKKSDTERFARFFHAMLDEGVY-LAPSQ---FEAGFVS---AAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred ecCCCcchh-hhccccHHHHHHHHHHHHHCCeE-eecCC---cCceeee---ccCCHHHHHHHHHHHHHHHHhh
Confidence 432100000 00000123345788888888974 44332 1235554 4668889999999999988764
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-11 Score=120.87 Aligned_cols=315 Identities=12% Similarity=0.053 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE-ecCCCchHHHHHHHH
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY-GSDQTHSALQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~-~s~~~H~s~~~a~~~ 191 (486)
....++.+.|+++++...+ ...|+++|||||..|+..||... ++..|+ .....|-...-+...
T Consensus 96 ~~~~~lae~L~~~~p~~~~-------~v~f~~SGsEA~e~AlklAr~~t---------gr~~ii~~~~~yHG~t~~a~s~ 159 (457)
T PRK05639 96 ERAIRVAEKLAEISPIENP-------KVLFGLSGSDAVDMAIKVSKFST---------RRPWILAFIGAYHGQTLGATSV 159 (457)
T ss_pred HHHHHHHHHHHhhCCCCcC-------EEEEeCchHHHHHHHHHHHHHhc---------CCCeEEEECCCcCCccHHHHHH
Confidence 3444566777887653222 57999999999999999998652 233343 344455443333333
Q ss_pred cCC--------C--CCCeEEEecCCCCC--cc----cCHH--------HHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 192 AGI--------D--PKNFRAIKTTKSSS--FT----LTPE--------SLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 192 ~G~--------g--~~~v~~v~~d~~~~--~~----~d~~--------~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
.|. + ...+..+|...... +. -|.+ .|++.|......+..+..|++.-.....|.+-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~ 239 (457)
T PRK05639 160 AAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVV 239 (457)
T ss_pred cCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcC
Confidence 331 1 12355565531100 00 1233 34443322111123456777777666667765
Q ss_pred C----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC
Q 038818 248 P----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST 323 (486)
Q Consensus 248 p----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~ 323 (486)
| +++|.++|++||+++++|+++.|+.....-+....-++ ..|.+++ .|.++..++.|.++.+++- .. .+.
T Consensus 240 p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv~~--gK~l~gG~pi~av~~~~~i-~~-~~~- 313 (457)
T PRK05639 240 PPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV-KPDLIIF--GKGVASGMGLSGVIGRKEL-MD-LTS- 313 (457)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCC-CCCEEEe--chhhcCCCcceeEEehHHH-Hh-hcC-
Confidence 4 89999999999999999999976422111111111244 5788884 7998876788888886542 11 111
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEecCC
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGGD-NRFEIVAPR 399 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~ 399 (486)
..+. .+.....+.+.+ ++..+..+ +..++..++.++|++.|+++ .++.++...
T Consensus 314 -~~~~-------------------~T~~g~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~V 370 (457)
T PRK05639 314 -GSAL-------------------LTPAANPVISAAAEATLEIIEEE---NLLKNALKVGEFIKKRLLEMKESFEVIGDV 370 (457)
T ss_pred -CCcc-------------------cCCCcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHhCCCEEee
Confidence 0111 011123333333 34444332 45566677888888888653 122222221
Q ss_pred --CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 400 --NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 400 --~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
...++.+.+..+.. ....+....+.+.+.++|.+. .+.. .+...+|+.. ....|++|||+++++|++
T Consensus 371 rG~Gl~~gve~~~~~~--------~~~~~~~~~~~~~~~~~Gv~~-~~~g-~~~~~lr~~P-pl~it~~~id~~~~~l~~ 439 (457)
T PRK05639 371 RGKGLMIGVEIVKENG--------KPDPELTGKICWRAFELGLIL-PSYG-MFGNVIRITP-PLVITKEIAEKGLEIMER 439 (457)
T ss_pred ccceeEEEEEEecCCC--------CCCHHHHHHHHHHHHhCCeEE-eecC-CCCCEEEEeC-CCccCHHHHHHHHHHHHH
Confidence 22344444432210 001344567888888899753 3321 1246899988 467888999999999999
Q ss_pred HHHHHh
Q 038818 478 KLDGIL 483 (486)
Q Consensus 478 ~~~~l~ 483 (486)
+++.+.
T Consensus 440 ~l~~~~ 445 (457)
T PRK05639 440 AIKDAL 445 (457)
T ss_pred HHHHHH
Confidence 987765
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-11 Score=121.37 Aligned_cols=314 Identities=11% Similarity=0.068 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
..++.++++++.+.+.. ...+++++|++|+..|+..+|... + ++.+|.++...|-...-+....+-
T Consensus 86 ~~~la~~l~~~~~~~~~------~~~~f~~sGsea~e~Alklar~~~-------~-r~~iv~~~~~yHG~~~~~~~~~~~ 151 (425)
T PRK08088 86 YLELCEKMNQKVPGDFA------KKTLLVTTGSEAVENAVKIARAAT-------K-RSGVIAFTGAYHGRTHYTLALTGK 151 (425)
T ss_pred HHHHHHHHHHhCCCCCC------CEEEEeCCcHHHHHHHHHHHHHHh-------C-CCeEEEECCccCCccHHHHHhhCC
Confidence 34677888887764321 156889999999999999998752 1 334555566666554443333221
Q ss_pred --------C--CCCeEEE--ecCCCCCcccC----HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHH
Q 038818 195 --------D--PKNFRAI--KTTKSSSFTLT----PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCD 254 (486)
Q Consensus 195 --------g--~~~v~~v--~~d~~~~~~~d----~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~ 254 (486)
+ ...+..+ |.+. + .++ ++.|+++++... .+..+.+|++.......|.+-| +++|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~p~~~--~-~~~~~~~~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~ 227 (425)
T PRK08088 152 VNPYSAGMGLMPGHVYRALYPCPL--H-GVSEDDAIASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRLRA 227 (425)
T ss_pred CCccccCCCCCCCCcEEcCCCccc--c-CccHHHHHHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHH
Confidence 0 1112222 2221 1 122 556887775321 2234556777766666676655 999999
Q ss_pred HHHHhCceEEeeccccchhccCccchhh-hcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHF-IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~-~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
+|++||+++++|.+|++.... ...... ..++ ..|. .+..|.++..+..|+++.+.+ .. +.+... .+
T Consensus 228 l~~~~~~~lI~Dev~~g~g~~-g~~~~~~~~~~-~pdi--~s~sK~l~~G~rig~v~~~~~-~~-~~~~~~-~~------ 294 (425)
T PRK08088 228 LCDEHGIMLIADEVQTGAGRT-GTLFAMEQMGV-AADL--TTFAKSIAGGFPLAGVTGRAE-VM-DAIAPG-GL------ 294 (425)
T ss_pred HHHHcCCEEEEeccccCCCcC-cchhHHhhcCC-CCCE--EEEeccccCCCcceeeEecHH-HH-hhcCCC-CC------
Confidence 999999999999999863221 111110 1121 2443 456899987677888887543 22 222110 00
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh----CCCCeEEecCCCeeEEEEEee
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVG----GDNRFEIVAPRNFAVVCFRVL 409 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~----~~~~~~~~~~~~~~~v~f~~~ 409 (486)
..+-....+...+++..+..-..+++.++..++.+++.+.|. ..|.+.-+..+ ..++.+.+.
T Consensus 295 -------------~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~ 360 (425)
T PRK08088 295 -------------GGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELF 360 (425)
T ss_pred -------------CCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEe
Confidence 000012333333333333221223444555555555555553 34443323222 344555553
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+.. ..........++.+.+.+.|+.+.+...+ ...+|+++. ...++++|++.++.|.++++.+
T Consensus 361 ~~~~------~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~--~~~iRl~~~-~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 361 EDGD------HSKPNAKLTAQIVARARDKGLILLSCGPY--YNVLRILVP-LTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred cCCC------CCCCCHHHHHHHHHHHHhCCCEEecCCCC--CCEEEEECC-CCcCHHHHHHHHHHHHHHHHhh
Confidence 2110 00001344567888888899765432222 367999983 4677889999999999988653
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-10 Score=114.68 Aligned_cols=313 Identities=15% Similarity=0.066 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
.+.++.+.|.+++.-... ...+|+++||+|+..|+..||... | ++.+|......|-...-+....|
T Consensus 77 ~~~~la~~l~~~~p~~~~------~~v~f~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~~~~~~ 142 (420)
T TIGR00700 77 GYVALAEKLNRIAPGSGP------KKSVFFNSGAEAVENAVKIARSYT-------G-RPGVVAFDHGFHGRTNMTMALTA 142 (420)
T ss_pred HHHHHHHHHHHhCCCCCC------CEEEEeCCcHHHHHHHHHHHHHhc-------C-CCcEEEECCCcCCCcHHHHHhcC
Confidence 344556777777632111 157899999999999999998762 1 22344455555644333333322
Q ss_pred --------CC--CCCeEEEecCCCC---------CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----ch
Q 038818 194 --------ID--PKNFRAIKTTKSS---------SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LG 250 (486)
Q Consensus 194 --------~g--~~~v~~v~~d~~~---------~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~ 250 (486)
.+ ...+..+|..... .+.-+++.+++.+.... .+..+..|++.-....+|.+-| ++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~Epi~g~~G~~~~~~~~l~ 221 (420)
T TIGR00700 143 KVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDV-GANNVAALVIEPVQGEGGFIVPAKGFVP 221 (420)
T ss_pred CCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhc-CCCcEEEEEECCccCCCCCccCCHHHHH
Confidence 11 1134444442100 00112556777664221 2234667888777777787765 89
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+|.++|++||+++++|+++.++.....-+.....++ ..|.++ ..|.++..+..|+++.+++ .. +.+.. ...
T Consensus 222 ~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~-~pDi~~--lsK~l~~G~pig~v~~~~~-i~-~~~~~--~~~-- 292 (420)
T TIGR00700 222 ALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGP-EPDLIT--TAKSLADGLPLSGVTGRAE-IM-DAPAP--GGL-- 292 (420)
T ss_pred HHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCC-CCCEEE--eeccccCCcceEEEEecHH-HH-hhcCC--CCc--
Confidence 999999999999999999977533221111001122 467655 6899987788899887643 22 22211 000
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHH----hCCCCeEEecCCCeeE
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELV----GGDNRFEIVAPRNFAV 403 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L----~~~~~~~~~~~~~~~~ 403 (486)
..+-....+.+.++ +..+..+.+. ++..++.+++++.| +++|.+..+. +...+
T Consensus 293 ----------------~~T~~~~pl~~aaa~a~l~~l~~~~~~---~~~~~~g~~l~~~L~~l~~~~~~~~~vr-g~G~~ 352 (420)
T TIGR00700 293 ----------------GGTYAGNPLACAAALAVLAIIESEGLI---ERARQIGRLVTDRLTTLKAVDPRIGDVR-GLGAM 352 (420)
T ss_pred ----------------CCCCCcCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHhhCCCEEEee-ccceE
Confidence 00111234444444 4444333433 33444444454444 3344443332 23445
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.+.+... .........++.+.+.++|+++.+...+ ..++|+++. ...++++|+++++.|.++++
T Consensus 353 ~~i~~~~~~~-------~~~~~~~~~~l~~~~~~~Gv~i~p~~~f--~~~lRl~p~-l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 353 IAVELVDPGT-------TEPDAGLAERIATAAHAAGLLLLTCGMF--GNIIRFLPP-LTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EEEEEecCCC-------CCccHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECC-CCcCHHHHHHHHHHHHHHhh
Confidence 5555532210 0011345677888888899865433222 258999873 34678899999999988763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-11 Score=121.78 Aligned_cols=311 Identities=11% Similarity=0.011 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
...+.++.+.+++++.. .+ ...|+++||||+..|+..||... | ++.+|......|-........
T Consensus 138 ~~~~~~lAe~l~~~~p~-~~-------~v~f~~SGsEA~e~AlklAR~~t-------g-r~~Ii~~~g~YHG~~~~~~~~ 201 (474)
T PLN02482 138 CLLENVLAEMVIDAVPS-VE-------MVRFVNSGTEACMGVLRLARAYT-------G-REKIIKFEGCYHGHADSFLVK 201 (474)
T ss_pred CHHHHHHHHHHHHhCCC-CC-------EEEEeCChHHHHHHHHHHHHHhc-------C-CCEEEEECCccCCCcchhhhh
Confidence 45666777888888742 12 57999999999999999999762 1 222333344444322111111
Q ss_pred c--C-----------CCC---CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chH
Q 038818 192 A--G-----------IDP---KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGP 251 (486)
Q Consensus 192 ~--G-----------~g~---~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~ 251 (486)
. | ++. ..+..+|. -|+++|++.|+.. +..+.+|++.......|.+-| +++
T Consensus 202 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------nd~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~ 271 (474)
T PLN02482 202 AGSGVATLGLPDSPGVPKAATSATLTAPY-------NDLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEG 271 (474)
T ss_pred cCCCccccCCCCCCCCCCCCCCCeEEecC-------CChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHH
Confidence 1 1 100 01222221 2789999988642 234567888877777888876 568
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCc
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNK 331 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~ 331 (486)
|.++|++||+.+++|+++.|+ .....+....-++ ..|.+++ -|.+++.+++|.+..+++ .. +.+.....+..
T Consensus 272 lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv-~PDi~t~--gK~lggG~Pigav~g~~e-i~-~~~~~~~~~~~-- 343 (474)
T PLN02482 272 LREITKENGALLVFDEVMTGF-RIAYGGAQEYFGI-TPDLTTL--GKVIGGGLPVGAYGGRRE-IM-EMVAPAGPMYQ-- 343 (474)
T ss_pred HHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCC-CCCEEEe--cchhhCCCceEEEEEcHH-HH-HhhccCCCccc--
Confidence 999999999999999999665 2221111111233 4677665 799987778899876543 32 23321111110
Q ss_pred cCCCCCccCCCCccccCCCCCCchHH---HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCeeEEE
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKL---WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNFAVVC 405 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~ 405 (486)
..+-...++.+ ..+|..+.. .+..++..++.++|++.|+++- ++.++.....+++.
T Consensus 344 ---------------~~T~~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~g 405 (474)
T PLN02482 344 ---------------AGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFG 405 (474)
T ss_pred ---------------ccCcchhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEE
Confidence 01111233333 334444432 2466777778888888886541 23332112223554
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.+.......... ..........++.+.|.++|++ +.+.... . ++ .+...|++|||+++++++++++++
T Consensus 406 i~f~~~~~~~~~~-~~~~d~~~~~~~~~~l~~~Gv~-~~~~~~~-~---~~--psl~ht~~dId~~l~al~~~l~~~ 474 (474)
T PLN02482 406 FFFTEGPVYNFAD-AKKSDTAKFARFHRGMLEEGVY-LAPSQFE-A---GF--TSLAHTEEDIDFTIAAAERVLARI 474 (474)
T ss_pred EEEecCCccChhh-hccCCHHHHHHHHHHHHHCCeE-EeccCCC-C---Cc--CCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4443211000000 0000123445678888888974 3332111 1 11 245668889999999999988754
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-10 Score=117.46 Aligned_cols=336 Identities=11% Similarity=0.063 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+.|++++.-+. ...+|+++||||+..|+.+||...... |..+ +..+|......|-...-+...
T Consensus 89 ~~~~~~lae~L~~~~p~~~-------~~v~f~~sGSEAve~AlKlAr~~~~~~-g~~~-r~kii~~~~~YHG~t~~a~s~ 159 (459)
T PRK05965 89 SEPAIRLAAKLAERAPGSL-------NHVYFTLGGSDAVDSAVRFIRHYWNAT-GRPS-KKQFISLERGYHGSSSVGAGL 159 (459)
T ss_pred CHHHHHHHHHHHhhCCCCc-------CEEEEeCChhHHHHHHHHHHHHHHHhc-CCCC-ccEEEEecCCcCcccHHHHHh
Confidence 3444566677777763221 257899999999999999999764221 1111 223444554556443323333
Q ss_pred cCC-------C--CCCeEEEecCCC--CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 192 AGI-------D--PKNFRAIKTTKS--SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G~-------g--~~~v~~v~~d~~--~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.|. + ...+..+|.... ..+.-| +++|++.|+.. ....+..|++.-.....|.+-|
T Consensus 160 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~y 237 (459)
T PRK05965 160 TALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGW 237 (459)
T ss_pred cCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHH
Confidence 221 1 122344443210 001123 25677777532 1134566777766666676644
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|.++|++||+.|++|+.+.|+.....-+....-++ ..|.+++ -|.++..+ +.|.++++++- . +.+......
T Consensus 238 l~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~i-~-~~~~~~~~~ 312 (459)
T PRK05965 238 LKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV-VPDLMTV--AKGLTSGYVPMGAVLMSDHV-Y-QGIADGAGA 312 (459)
T ss_pred HHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC-CCCeEEe--chhhccCCcceeEEEEcHHH-H-HHHhccccc
Confidence 89999999999999999999877633221111111233 5788887 58888774 78888887652 2 223211000
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--CeeEEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFAVVC 405 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~~v~ 405 (486)
.. .+....+-...++++.++++.+-.---++..++..++.++|.+.|+++....++... ...++.
T Consensus 313 ~~-------------~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~g 379 (459)
T PRK05965 313 AA-------------PVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGA 379 (459)
T ss_pred cc-------------cccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEE
Confidence 00 000011112334444444444311111245677788888888888764222222111 123344
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+.+....... ++ .........++.+.+.++|.++ .+ .+..++|++. ....+++|||++++.|.++++++.+
T Consensus 380 ie~~~~~~~~-~~--~~~~~~~~~~i~~~~~~~Gll~-~~---~g~~~i~~~P-pL~it~~ei~~~~~~l~~~l~~~~~ 450 (459)
T PRK05965 380 LELVADKATK-TP--FDAALDPADRIFDRAYANGLVF-RA---FGDGVLGFAP-ALCCTEGEFDLIFERTRKTLDDVLA 450 (459)
T ss_pred EEEecccccc-CC--CCchhHHHHHHHHHHHhCCeEE-Ee---cCCcEEEEEC-CCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 4443211000 00 0001234567788888899754 22 2345789886 4567889999999999999987653
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-11 Score=112.18 Aligned_cols=332 Identities=12% Similarity=0.125 Sum_probs=203.8
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS 183 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 183 (486)
.|..+.+..++-..+.+.....+..+... ..+.++|+|.|.+...++.++++ .++.|++...++.
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~~----~wdiiit~G~t~~l~~~l~~~~N-----------~gd~vlie~~ty~ 159 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYK----NWDIIITNGNTDGLFKVLRTLIN-----------RGDHVLIEEYTYP 159 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCCC----CceEEEecCCchHHHHHHHHhhc-----------CCCceEEecccch
Confidence 45555566666665555444344444321 13789999999999999999988 6778999999999
Q ss_pred HHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC--C-CccEEEEee--cCCccccccCCc---hHHHHH
Q 038818 184 ALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA--G-LIPLFLCAT--VGTTAITTVDPL---GPLCDI 255 (486)
Q Consensus 184 s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~--g-~~p~~vv~~--~gtt~~G~idpl---~~I~~i 255 (486)
+-...++.+|+ +++.|+.|.+ .+++|.|++.+..-.-. + ..|- |..| .|.|+||..-.+ ++|.+|
T Consensus 160 ~AL~s~~a~gv---~~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~-vlYTIPTgqNPTG~tls~errk~iy~L 232 (472)
T KOG0634|consen 160 SALQSMEALGV---KIIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPH-VLYTIPTGQNPTGNTLSLERRKKIYQL 232 (472)
T ss_pred HHHHhccccCc---eEEeccccCC---CCCHHHHHHHHhcCCcccccCCCCe-EEEeCcCCCCCCCCccCHHHHHHHHHH
Confidence 98899999999 9998888753 79999999998754321 1 2353 4444 478999987554 699999
Q ss_pred HHHhCceEEeeccccchhccC---------ccch------hhhcCCC--CCC--ceeec-cccccCCCCcceEEEeeCch
Q 038818 256 AKRYSIWVHVDAAYAGSACIC---------PEFR------HFIDGIE--GAD--SFSLN-AHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~---------~~~~------~~~~~~~--~aD--si~~~-~hK~l~~p~~~g~~~~~~~~ 315 (486)
|++|++.++.|..|.-..+.. +.+. .+....- ..| .|..+ +.|.+....-.|++.....
T Consensus 233 ArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~- 311 (472)
T KOG0634|consen 233 ARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSL- 311 (472)
T ss_pred HHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHH-
Confidence 999999999999985433221 1111 0111110 111 22222 4677765555665544332
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHH----HHHHHHHHHHhC-C
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHV----RMAQLFQELVGG-D 390 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~----~~a~~l~~~L~~-~ 390 (486)
.+.+.+.. .+.+.+.-..+...-++..++.+|.+|+.+.+.+.. ..++.+...|.+ +
T Consensus 312 ~l~ril~~------------------ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kyl 373 (472)
T KOG0634|consen 312 FLKRILDL------------------AEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYL 373 (472)
T ss_pred HHHHHhhh------------------cceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222110 011111111234466788889999988776665544 456666666654 4
Q ss_pred CCe-EEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE------C-CEeEEEEEecCC
Q 038818 391 NRF-EIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV------A-GIYFIRFAVGAT 461 (486)
Q Consensus 391 ~~~-~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------~-~~~~lR~~~~~~ 461 (486)
|.- ..+.+|..+++.+ .+.-... ......++..+.+...+.+.|+..+.+..+ . ++-++|+++.
T Consensus 374 p~~~~~~~~P~aGmFiwv~i~~~~~-----~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a-- 446 (472)
T KOG0634|consen 374 PKSVCEYHPPKAGMFIWVEIPYINF-----DTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA-- 446 (472)
T ss_pred CCCeeEEecCCcceEEEEEeccccc-----ccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEee--
Confidence 432 3334666666544 4431100 012334555566777888899865555432 1 2349999994
Q ss_pred CCcHHHHHHHHHHHHHHHHHHh
Q 038818 462 LTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~l~ 483 (486)
..+.+++++.++.+..++++-.
T Consensus 447 ~a~~e~l~~g~~rf~~~ike~f 468 (472)
T KOG0634|consen 447 FAEPEKLDEGIERFGSVIKEHF 468 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 5566688888888887776544
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-10 Score=118.01 Aligned_cols=317 Identities=10% Similarity=0.020 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+...++.+.|+++..-.-+ ..+|+++||+|+..|+..||... + +..+|......|-...-+...
T Consensus 94 ~~~~~~lae~L~~~~p~~~~-------~v~f~~SGsEAve~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~als~ 158 (451)
T PRK06062 94 NDARSEAARLIAERAPGDLS-------KVFFTNGGADANEHAVRMARLHT-------G-RPKVLSAYRSYHGGTGSAINL 158 (451)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEcCChHHHHHHHHHHHHHhh-------C-CceEEEEeCCCCCCCHHHHhh
Confidence 44455666778887642212 57999999999999999998762 1 233444444455444344433
Q ss_pred cCCC--------CCCeEEEecCCCCCcc------cC-------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC--
Q 038818 192 AGID--------PKNFRAIKTTKSSSFT------LT-------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP-- 248 (486)
Q Consensus 192 ~G~g--------~~~v~~v~~d~~~~~~------~d-------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp-- 248 (486)
.|.. ...+..++... .++ .| +++|+++|+.. ....+.+|++.......|.+-|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~ 234 (451)
T PRK06062 159 TGDPRRWPNDTGRAGVVHFFGPF--LYRSEFHATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPP 234 (451)
T ss_pred cCCcccccCCCCCCCCEEeCCCC--ccccccCCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCH
Confidence 3321 01223333221 111 12 67778877531 1234567788777777788888
Q ss_pred --chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCc
Q 038818 249 --LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 249 --l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~ 325 (486)
+++|.++|++||+.|++|+++.|+.....-+.....++ ..|.+++ -|.++..+ +.|.++.+++ .. +.+.. .
T Consensus 235 ~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv-~PDi~t~--gK~lggG~~Pigav~~~~~-i~-~~~~~-~ 308 (451)
T PRK06062 235 GYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV-VPDLITF--AKGVNSGYVPLGGVAISEA-IA-ATFAD-R 308 (451)
T ss_pred HHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC-CCCeeee--chhhhcCCcCcEEEEEcHH-HH-HHhcc-C
Confidence 99999999999999999999987432211111111244 5787765 79888764 6888888763 32 33321 1
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHH-HHHHHHHhC----CCCe-EEe
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMA-QLFQELVGG----DNRF-EIV 396 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a-~~l~~~L~~----~~~~-~~~ 396 (486)
.+... .+-...++.+.+ ++..+-.+. ..++..++. ++|++.|++ .|.+ .+-
T Consensus 309 ~~~~~-----------------~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vr 368 (451)
T PRK06062 309 PYPGG-----------------LTYSGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVGEVR 368 (451)
T ss_pred CCCCC-----------------CCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEEeEe
Confidence 11100 011122333333 444443332 445555555 355555544 3322 222
Q ss_pred cCCCeeEEEEEeecCCC-CCC-CCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 397 APRNFAVVCFRVLPSAS-GLG-DGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 397 ~~~~~~~v~f~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+. ..++.+.+..+.. +.. +. .........++.+.+.++|++. .+ . ...+|++. ....|++|||+++++
T Consensus 369 G~--Gl~~gve~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gvl~-~~---~-~~~lrl~p-pl~~t~~eid~~~~~ 438 (451)
T PRK06062 369 GL--GVFWALELVADRETREPLAP--YGASSAAMAAVKAACKERGLLP-FV---N-GNRIHVVP-PCTVTEDEVREGLAI 438 (451)
T ss_pred cc--ccEEEEEEcccccccCCCcc--cchhhHHHHHHHHHHHHCCcEE-ee---c-CCEEEEEC-CccCCHHHHHHHHHH
Confidence 11 2344444432110 000 00 0000234567888888999753 22 1 24689876 346788999999999
Q ss_pred HHHHHHHHh
Q 038818 475 VQEKLDGIL 483 (486)
Q Consensus 475 l~~~~~~l~ 483 (486)
++++++.+-
T Consensus 439 l~~~l~~~~ 447 (451)
T PRK06062 439 LDAALAVAD 447 (451)
T ss_pred HHHHHHHhh
Confidence 999987654
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-10 Score=117.46 Aligned_cols=326 Identities=13% Similarity=0.047 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHcCCCC-CCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPK-SFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~-~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
++...++.+.|++++.... .. ...+++++||||+..|+..||... | ++.+|......|-...-+..
T Consensus 81 ~~~~~~lae~L~~~~p~~~~~~-----~~~f~~~sGsEA~e~AlklAr~~t-------g-r~~Ii~~~~~yHG~t~~~~s 147 (442)
T TIGR00709 81 TPLKDAFIEALLNIIPKRKMDY-----KLQFPGPSGADAVEAAIKLAKTYT-------G-RTNVISFSGGFHGMTIGALA 147 (442)
T ss_pred cHHHHHHHHHHHHhCCCcCCCc-----cEEEeCCCHHHHHHHHHHHHHHhc-------C-CCeEEEEcCCcCCchHHHHh
Confidence 4455566788888874321 11 123556899999999999999762 1 23344455556655444444
Q ss_pred HcCC---------CCCCeEEEecCCCCCccc--------CHHHHHHHHHHHH----HCCCccEEEEeecCCccccccCC-
Q 038818 191 IAGI---------DPKNFRAIKTTKSSSFTL--------TPESLQAAIDLDI----QAGLIPLFLCATVGTTAITTVDP- 248 (486)
Q Consensus 191 ~~G~---------g~~~v~~v~~d~~~~~~~--------d~~~L~~~l~~~~----~~g~~p~~vv~~~gtt~~G~idp- 248 (486)
..|. ....+..+|... ..+. +.+.+.+.+++.. .....+..|++.......|.+-|
T Consensus 148 ~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~ 225 (442)
T TIGR00709 148 VTGNLFAKNAVGMLMPGVQFMPYPH--EYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAP 225 (442)
T ss_pred hcCChhhhccCCCCCCCcEEeCCCc--cccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCC
Confidence 4331 011344444421 1121 2233333232221 11123556777766666676632
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCc
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
+++|.++|++||+++++|+++.|+.....-+.....++ ..|.+++ .|.++..++.|.++.+++ . . .+. +
T Consensus 226 ~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~~G~Pigav~~~~~-~-~-~~~--~ 297 (442)
T TIGR00709 226 SEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGI-EPDFVVM--SKAVGGGLPLAVLLIAPE-F-D-AWQ--P 297 (442)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCC-CCcEEEE--cccccCCcccEEEEEchH-H-h-ccC--C
Confidence 89999999999999999999977543221111111233 4688884 788887788999998765 2 2 221 1
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH---hchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS---FGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR-- 399 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~---~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~-- 399 (486)
... ..+-...++++.+++.. +..+ ++.++..++.++|.+.|+++. ...++...
T Consensus 298 ~~~------------------~~T~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG 356 (442)
T TIGR00709 298 AGH------------------TGTFRGNQLAMVTGTEALNYWKDD---NLAQNAQERGERITSFLDDMIKEHPCIGNVRG 356 (442)
T ss_pred CcC------------------CCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec
Confidence 000 00111233444444443 3333 445667777777777776531 12222221
Q ss_pred CeeEEEEEeecCCC-CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSAS-GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 400 ~~~~v~f~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
...++.+.+..+.. +..... .........++...+.++|.+ +.+... ....+|+.. ....|++|||+++++++++
T Consensus 357 ~Gl~~~ie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Gvl-~~~~~~-~~~~l~~~P-pl~it~~ei~~~~~~l~~~ 432 (442)
T TIGR00709 357 RGLMQGIMIVDERQSKDATGA-YPRDCELAAAIQGACFENGLL-LETGGR-EGEVFRLLC-PITIDQEECEEGISRFKQA 432 (442)
T ss_pred cceEEEEEEccCccccccccc-CCcchHHHHHHHHHHHHCCeE-EeecCC-CCCEEEEEC-CCCCCHHHHHHHHHHHHHH
Confidence 22344554432210 000000 000123456778888888975 332211 245789887 4678899999999999999
Q ss_pred HHHHhhc
Q 038818 479 LDGILAT 485 (486)
Q Consensus 479 ~~~l~~~ 485 (486)
++++.+|
T Consensus 433 l~~~~~~ 439 (442)
T TIGR00709 433 VEEALAE 439 (442)
T ss_pred HHHHHHH
Confidence 9887664
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-10 Score=113.84 Aligned_cols=315 Identities=13% Similarity=0.055 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
...++.+.|++++..+.. ...+|+++||+|+..|+..||... + ++.+|......|-...-+....|
T Consensus 84 ~~~~la~~l~~~~p~~~~------~~~~f~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~~s~t~ 149 (421)
T PRK06777 84 SYVTLAERINALAPIDGP------AKTAFFTTGAEAVENAVKIARAYT-------G-RPGVIAFGGAFHGRTLLTMALTG 149 (421)
T ss_pred HHHHHHHHHHHhCCCCCC------ceEEEeCCcHHHHHHHHHHHHHhh-------C-CCeEEEEcCCcCCccHHHHhhcC
Confidence 344556777777643211 157889999999999999998752 1 22234344445544333433333
Q ss_pred C--------C--CCCeEEEecCCCCC---cccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-CC---chHHHHHH
Q 038818 194 I--------D--PKNFRAIKTTKSSS---FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-DP---LGPLCDIA 256 (486)
Q Consensus 194 ~--------g--~~~v~~v~~d~~~~---~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-dp---l~~I~~i~ 256 (486)
. + ...+..+|...... ..-+++.+++.+++.. .+..+.+|++.......|.. -| +++|.++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc 228 (421)
T PRK06777 150 KVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLC 228 (421)
T ss_pred CCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence 1 0 11233333321000 0124667787775321 12335567777666666743 33 89999999
Q ss_pred HHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
++||+++++|+++.++......+.....++ ..|.++ ..|.++..+..|.++.+++ .. +.+... ...
T Consensus 229 ~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~pDiv~--~sK~l~~G~pigav~~~~~-i~-~~~~~~--~~~------- 294 (421)
T PRK06777 229 DEHGILLIADEVQTGFARTGKLFAMEYYDV-KPDLIT--MAKSLGGGMPISAVVGRAE-VM-DAPAPG--GLG------- 294 (421)
T ss_pred HHcCCEEEEechhhCCccCCchhhhhhcCC-CCCEEe--eehhhcCCCceEEEEEcHH-HH-hccCCC--CCC-------
Confidence 999999999999986432111111001122 466554 5798886677888887643 22 222110 000
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEeecCC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRVLPSA 412 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~ 412 (486)
.+. ....+.+.+++..+..-.-.++.++..++.++|++.|+++ |.+.-+ .+...++.+.+..+.
T Consensus 295 -------~T~----~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~G~~~~i~~~~~~ 362 (421)
T PRK06777 295 -------GTY----AGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDI-RARGSMVAVEFNDPQ 362 (421)
T ss_pred -------CCC----CcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCceEEEEEEEecCc
Confidence 011 1233333344333311111356677778888888888653 333322 334445554443321
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
. .....++...+.+.+.++|+++.....+ ..++|++. ....++++|+++++.|++.+
T Consensus 363 ~-------~~~~~~~~~~l~~~~~~~Gv~i~~~~~~--g~~lr~~p-pl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 363 T-------GKPSPEFTRQYQRQALEEGLLLLSCGVH--GNVIRFLY-PLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred c-------CCccHHHHHHHHHHHHhCCeEEeecCCC--CCEEEEeC-CCCCCHHHHHHHHHHHHHHH
Confidence 0 0011345667777788889754332222 25799986 34678899999999998875
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-10 Score=116.12 Aligned_cols=326 Identities=13% Similarity=0.088 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+.|+++++-.-. ..+|+++||+|+..|+.+||.....+ +..+ +..+|......|-...-+....
T Consensus 97 ~~~~~lAe~L~~~~p~~~~-------~v~f~~sGseAve~AlKlA~~~~~~r-g~~~-r~~Ii~~~~~yHG~t~gals~~ 167 (453)
T PRK06943 97 EPAIELAERLAALTGGTLG-------HAFFASDGASAVEIALKMSFHAWRNR-GRGD-KREFVCLANGYHGETIGALGVT 167 (453)
T ss_pred HHHHHHHHHHHHhCCCCCC-------EEEEeCCCHHHHHHHHHHHHHHHHHh-CCCC-CCEEEEECCCcCCCcHHhhccc
Confidence 4445566778887653222 57999999999999999998754221 1111 2234444545554333333333
Q ss_pred CCC---------CCCeEEEecCCCCC--c--------ccCHHHHHHHHHHHHHCCCccEEEEeec-CCccccccCC----
Q 038818 193 GID---------PKNFRAIKTTKSSS--F--------TLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAITTVDP---- 248 (486)
Q Consensus 193 G~g---------~~~v~~v~~d~~~~--~--------~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G~idp---- 248 (486)
|-. ...+..+|...... . .-++++|++.++. .+..+..|++.- .....|.+-|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~y 244 (453)
T PRK06943 168 DVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSY 244 (453)
T ss_pred CChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHH
Confidence 210 01233444321000 0 0134677777753 223455677765 2555676543
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
++++.++|++||+.+++|+.+.|+.....-+....-++ ..|.+++ -|.++..+ +.|.++.+++- .+.+.....
T Consensus 245 l~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv-~PDivt~--gKgl~gG~~Pi~av~~~~ei--~~~~~~~~~- 318 (453)
T PRK06943 245 LRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGV-WPDFLCL--SKGISGGYLPLSLVLSRDAI--FAAFYDDDV- 318 (453)
T ss_pred HHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCC-CCCeEee--ehhhccCcccceEEEEcHHH--HHhhcccCc-
Confidence 89999999999999999999877532221111111234 5888887 68888764 78888887652 222321100
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCCeeEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRNFAVV 404 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v 404 (486)
.. .+....+....++++.++++.+..-.-.+..++..++.++|.+.|+++ +.+.-+. -...++
T Consensus 319 --------~~-----~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~ 384 (453)
T PRK06943 319 --------TR-----GFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLR-QRGTIF 384 (453)
T ss_pred --------cC-----CccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccccEE
Confidence 00 000011112344555455444321111235566777777777777653 3332111 112234
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.+.+..+. .. ......++.+.+.++|.++ .+. + ..+|++. ....|++|||+++++|++.++++.+
T Consensus 385 gvel~~~~--------~~-~~~~~~~i~~~~~~~Gll~-~~~---g-~~l~~~P-pl~it~~eid~~~~~l~~al~~~~~ 449 (453)
T PRK06943 385 AFDVALDG--------DA-ARTFSRRFFEAALERELLL-RPI---G-TTVYLMP-PYVLDDDEIAWLAERTRATLDATLA 449 (453)
T ss_pred EEEEccCC--------Cc-chHHHHHHHHHHHHCCcEE-Eec---C-CEEEEeC-CCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44443211 00 0234567888888899754 322 2 3589886 3567889999999999999988765
Q ss_pred c
Q 038818 485 T 485 (486)
Q Consensus 485 ~ 485 (486)
+
T Consensus 450 ~ 450 (453)
T PRK06943 450 E 450 (453)
T ss_pred h
Confidence 4
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-10 Score=114.16 Aligned_cols=328 Identities=11% Similarity=0.082 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.|+++++... ..+|+++||+|+..|+.+||..... .|..+ +..+|......|-...-+...
T Consensus 88 ~~~~~~lae~l~~~~~~~~--------~v~f~~sGseA~e~AlklAr~~t~~-~g~~~-r~~ii~~~~~yHG~t~~als~ 157 (451)
T PRK07678 88 HEPAIKLAEKLNEWLGGEY--------VIFFSNSGSEANETAFKIARQYHAQ-KGEPH-RYKFISRYRAYHGNSMGALAA 157 (451)
T ss_pred CHHHHHHHHHHHHhCCCCC--------EEEEeCCcHHHHHHHHHHHHHHHHh-cCCCC-CcEEEEECCCcCCccHHHhhc
Confidence 3445566777888775432 5789999999999999999976422 12111 223444444455443333333
Q ss_pred cCCC---------CCCeEEEecCCCCCccc---------CH---HHHHHHHHHHHHCCCccEEEEeecCCccccccCC--
Q 038818 192 AGID---------PKNFRAIKTTKSSSFTL---------TP---ESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP-- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~~~---------d~---~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp-- 248 (486)
.|.. ...+..+|... .++. |. +.+++.|+.. .+..+..|++.-.....|.+-|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPiqg~gG~~~~~~ 233 (451)
T PRK07678 158 TGQAQRKYKYEPLAPGFLHVPPPD--CYRMPGIESEDIYDLECVKEIDRVMTWE--LSETIAAVIMEPIITGGGVLMPPQ 233 (451)
T ss_pred CCCcccccccCCCCCCCEEeCCCc--cccccccCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCH
Confidence 3210 11334444321 1111 12 2355556421 2234667777766666677755
Q ss_pred --chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCc
Q 038818 249 --LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 249 --l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
++++.++|++||+.|++|+++.|+.....-+.....++ ..|.+++ -|.++.. +++|.++++++- . +.+....
T Consensus 234 ~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv-~PDivt~--gK~lggG~~Pi~av~~~~~i-~-~~~~~~~ 308 (451)
T PRK07678 234 DYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV-KPDIITM--AKGITSAYLPLSATAVKKEI-Y-EAFKGKG 308 (451)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC-CCCEEEe--ecccccCCcceeEEEEcHHH-H-HHHhccC
Confidence 89999999999999999999966532211111111234 5888877 6888866 478888887652 2 2332111
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecC
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAP 398 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~ 398 (486)
.+- .+....+-...++.+.++ +..+-.+ ++.++..++.++|.+.|++ ++.+.-+ .
T Consensus 309 ~~~--------------~~~h~~T~~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v-r 370 (451)
T PRK07678 309 EYE--------------HFRHVNTFGGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKEELGEHPLVGDI-R 370 (451)
T ss_pred ccc--------------ccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-E
Confidence 000 000011112233444444 4434333 3456666677777766643 3321111 1
Q ss_pred CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEee--eeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 399 RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSH--GMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 399 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
-...++.+.+..+... ..........++.+.+.++|++.... ++..+...+|++. ....|++|||+++++++
T Consensus 371 g~Gl~~~i~~~~~~~~-----~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~P-pl~it~~eid~~~~~l~ 444 (451)
T PRK07678 371 GKGLLVGIELVNDKET-----KEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSP-PLVISSEEIAFIVGTLK 444 (451)
T ss_pred eeceEEEEEEecCCcc-----cCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEEC-CCcCCHHHHHHHHHHHH
Confidence 1233445544322100 00001244567888888999854221 1112346799987 34668889999999999
Q ss_pred HHHHHH
Q 038818 477 EKLDGI 482 (486)
Q Consensus 477 ~~~~~l 482 (486)
++++++
T Consensus 445 ~~l~~~ 450 (451)
T PRK07678 445 TALERI 450 (451)
T ss_pred HHHHhc
Confidence 988764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-10 Score=112.29 Aligned_cols=316 Identities=12% Similarity=0.039 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+...++.+.+++++.-+.. ...+|+++|||||..|+..||... | +..+|......|-...-+...
T Consensus 82 ~~~~~~la~~l~~~~p~~~~------~~v~f~~SGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~~~~ 147 (425)
T PRK07495 82 YENYVRLAERLNALVPGDFA------KKTIFVTTGAEAVENAVKIARAAT-------G-RSAVIAFGGGFHGRTFMGMSL 147 (425)
T ss_pred CHHHHHHHHHHHHhCCCCCC------CEEEECCchHHHHHHHHHHHHHhh-------C-CCeEEEECCCcCCccHHHhhh
Confidence 34445566778887642210 157999999999999999998752 1 223444454555443222222
Q ss_pred cCC--------C--CCCeEEEecCCCCCcccC----HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHH
Q 038818 192 AGI--------D--PKNFRAIKTTKSSSFTLT----PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLC 253 (486)
Q Consensus 192 ~G~--------g--~~~v~~v~~d~~~~~~~d----~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~ 253 (486)
.|. + ...+..+|.+.+.+ .++ ++++++.++... .+..+.+|++.-.....|.+-| +++|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~ 225 (425)
T PRK07495 148 TGKVVPYKVGFGAMMPDVYHVPFPVELH-GVSVEQSLAALDKLFKADV-DPQRVAAIIIEPVQGEGGFYPAPAAFMKALR 225 (425)
T ss_pred cCCCcccccCCCCCCCCeEEecCCcccc-cccHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHH
Confidence 221 1 11345566542111 233 344465554211 1234566777766556675533 89999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
++|++||+++++|+++.|+.....-+.....++ ..|.+++ .|.++..+++|.++.+++ . .+.+.. ...
T Consensus 226 ~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv-~pDi~tl--sK~l~~G~pigav~~~~~-i-~~~~~~--~~~----- 293 (425)
T PRK07495 226 ELCDQHGILLIADEVQTGFARTGKLFAMEHHEV-AADLTTM--AKGLAGGFPLAAVTGRAE-I-MDAPGP--GGL----- 293 (425)
T ss_pred HHHHHcCCEEEEechhhcCCcCCCceeecccCC-CCCEEee--hhhhcCCccceEEEEcHH-H-HhccCC--CCc-----
Confidence 999999999999999976422111111101122 3565554 788887677888887653 2 222211 000
Q ss_pred CCCCccCCCCccccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCe-EEecCCCeeEEE
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRF-EIVAPRNFAVVC 405 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~-~~~~~~~~~~v~ 405 (486)
..+-....+.+. ++++.+..+ +..++..++.++|++.|++ .|.+ ++.+. ..++.
T Consensus 294 -------------~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~--Gl~~~ 355 (425)
T PRK07495 294 -------------GGTYGGNPLGIAAAHAVLDVIEEE---DLCERANQLGNRLKQRLASLRETVPEIADIRGP--GFMNA 355 (425)
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC--ceEEE
Confidence 001112333333 444444332 3455666667777666654 3322 22212 33445
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.+.+.... ........++.+.+.++|.+. ...... ...+|+.. ....++++||++++.|+++++++.
T Consensus 356 iel~~~~~~-------~~~~~~~~~~~~~~~~~Gvl~-~~~g~~-~~~~r~~P-pl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 356 VEFNDADSG-------LPSAEFANRVRLKALEKGLIL-LTCGVH-GNVIRFLA-PITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred EEEecCCCC-------CccHHHHHHHHHHHHHCCeEE-eecCCC-CCEEEEeC-CCccCHHHHHHHHHHHHHHHHHHh
Confidence 555432110 001234567888888899754 222111 36799987 467899999999999999998764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-10 Score=115.29 Aligned_cols=334 Identities=10% Similarity=0.013 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.|++++.-+-+ ..+|+++||||+..|+.+||.....+ +..+ +..+|......|-.-.-+...
T Consensus 93 ~~~~~~lAe~L~~~~p~~~~-------~v~f~~sGSEAve~AlKlAr~~~~~~-g~~~-r~~Ii~~~~~YHG~t~ga~s~ 163 (461)
T PRK07482 93 TEASITLSKRIIDRAPAGMS-------KVYYGLSGSDANETQIKLVWYYNNVL-GRPE-KKKIISRWRGYHGSGVVTGSL 163 (461)
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCCC-CceEEEecCccCCccHhhhhc
Confidence 45566677888887632112 57899999999999999998753211 2111 222333344455332222222
Q ss_pred cC---------CCCCCeEEEecCCCCCc-----------ccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---
Q 038818 192 AG---------IDPKNFRAIKTTKSSSF-----------TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP--- 248 (486)
Q Consensus 192 ~G---------~g~~~v~~v~~d~~~~~-----------~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp--- 248 (486)
.| .....+..+|.....+. .-++++|++.++.. ....+..|++.-.....|.+-|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~ 241 (461)
T PRK07482 164 TGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAG 241 (461)
T ss_pred cCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHH
Confidence 21 11123344433210000 01457777777532 1233566777766665676643
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+++|.++|++||+.|++|+.+.|+.....-+.....++ ..|.+++ -|.++..+ +.|.++.+++ . .+.+....+
T Consensus 242 yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~-i-~~~~~~~~~ 316 (461)
T PRK07482 242 YWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGI-EPDLITV--AKGLTSAYAPLSGSIVGEK-V-WDVLEQGSD 316 (461)
T ss_pred HHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCC-CCCEEEE--ccccccCccccceeeecHH-H-HHHHhcccc
Confidence 88999999999999999999877643222222212244 5888886 68888765 6788887754 2 222321100
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCC
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPR 399 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~ 399 (486)
.. + .+....+-...++++.++ ++.+-.+ +..++..++.++|.+.|++ +|.+.-+ .-
T Consensus 317 ~~--------~-----~~~h~~T~~gnpl~~Aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v-rG 379 (461)
T PRK07482 317 EH--------G-----AIGHGWTYSGHPICAAAALANLDILERE---NLVGNAAEVGAYFRARLRAAFGDHPLVGEV-RG 379 (461)
T ss_pred cC--------C-----ccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-ee
Confidence 00 0 000011112334444444 4444333 3455566677777777653 4322111 11
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
...++.+.+...... .++ ........+++...+.++|.+. .... +...+|+.. ....|++|||+++++|++.+
T Consensus 380 ~Glm~giel~~~~~~-~~~--~~~~~~~~~~i~~~~~~~Gvl~-~~~~--~~~~i~~~P-pl~it~~ei~~~~~~l~~~l 452 (461)
T PRK07482 380 VGMLAAVEFVADRDD-RTP--FDPALKIGPQVSAAALERGVIA-RAMP--HGDILGFAP-PLVLTRAEADEIVAIAKDAV 452 (461)
T ss_pred ceeEEEEEeccCCCc-CCC--CChhhHHHHHHHHHHHHCCcEE-ecCC--CCCEEEEeC-CCCCCHHHHHHHHHHHHHHH
Confidence 223444444321100 000 0000124567888888999753 2211 235688876 46778999999999999998
Q ss_pred HHHhhc
Q 038818 480 DGILAT 485 (486)
Q Consensus 480 ~~l~~~ 485 (486)
+++.++
T Consensus 453 ~~~~~~ 458 (461)
T PRK07482 453 DEVLGR 458 (461)
T ss_pred HHHHHH
Confidence 876543
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-10 Score=115.84 Aligned_cols=330 Identities=13% Similarity=0.052 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
...+.++.+.|+++++-..+ ..+|+++||+|+..|+.+||...... |..+ +..+|......|-...-+...
T Consensus 93 ~~~~~~lae~L~~~~p~~~~-------~v~f~~SGseA~e~AlklAr~~~~~~-g~~~-r~~ii~~~~~yHG~tl~a~s~ 163 (456)
T PRK07480 93 HPPAIELAAKLAEVAPPGFN-------HVFFTNSGSEANDTVLRMVRHYWALK-GKPQ-KKVIISRKNGYHGSTVAGASL 163 (456)
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEECCCcCCcchhhhhc
Confidence 34555667778887642222 57899999999999999998753211 1111 222333444455433222222
Q ss_pred cCC-------C--CCCeEEEecCCC--CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 192 AGI-------D--PKNFRAIKTTKS--SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G~-------g--~~~v~~v~~d~~--~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.|. + ...+..+|.... .....+ +++|++.+.+. .+..+..|++.......|.+-|
T Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vAAvi~EPiqg~gG~~~~~~~y 241 (456)
T PRK07480 164 GGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GADNVAAFIGEPIQGAGGVIIPPATY 241 (456)
T ss_pred cCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHH
Confidence 221 0 112333332100 000011 25555555321 1234556777766666777766
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|.++|++||+.|++|+++.|+.-...-+.....++ ..|.+++ -|.++..+ +.|.++.+++ .. +.+...+..
T Consensus 242 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~ 316 (456)
T PRK07480 242 WPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGI-KPDLMTI--AKGLTSGYIPMGAVGVGDR-VA-EVLIEEGGE 316 (456)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCC-CCCeeee--ehhhccCCccceEEEEcHH-HH-HHHhcCCCC
Confidence 99999999999999999999976532211111111233 4777766 68887654 6788887654 22 233111110
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHH-HHHHHHHHHHHhCCCCeEEecCC--Ce
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSH-VRMAQLFQELVGGDNRFEIVAPR--NF 401 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~-~~~a~~l~~~L~~~~~~~~~~~~--~~ 401 (486)
... ..+-...++.+.+ +|..+-.+ +..++. .++.++|.+.|+++....++... ..
T Consensus 317 ~~~----------------~~T~~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~G 377 (456)
T PRK07480 317 FNH----------------GFTYSGHPVAAAVALANLRILRDE---GIVERVRDDTGPYLQKRLRELADHPLVGEVRGVG 377 (456)
T ss_pred ccc----------------CCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeec
Confidence 000 0111123344444 44444333 344555 35666666666553222111111 12
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.++.+.+..+... .. ...........+.+.+.++|.+. .+. + ..+|++. ....|++|||++++.|++++++
T Consensus 378 lm~gie~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~Gll~-~~~---~-~~l~~~P-pl~it~~eid~~~~~l~~al~~ 448 (456)
T PRK07480 378 LVGAIELVKDKAT-RE--RFEAGGGVGTICRDHCFANGLIM-RAV---G-DRMIISP-PLVITHAEIDELVEKARKALDA 448 (456)
T ss_pred ceEEEEEeccccc-cc--cCcchhhHHHHHHHHHHHCCcEE-eec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444322100 00 00011223456777888899754 321 2 4688876 3456889999999999999988
Q ss_pred Hhhc
Q 038818 482 ILAT 485 (486)
Q Consensus 482 l~~~ 485 (486)
+.+|
T Consensus 449 ~~~~ 452 (456)
T PRK07480 449 TAAE 452 (456)
T ss_pred HHHH
Confidence 7554
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-10 Score=115.38 Aligned_cols=301 Identities=13% Similarity=0.028 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC-----CCeEEEecCCCchHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI-----SRLVVYGSDQTHSALQ 186 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~-----~~~~v~~s~~~H~s~~ 186 (486)
+..+.++.+.|+++.+. + ..+++++||||+..|+..||....++....+. +..+|......|-...
T Consensus 56 ~~~~~~la~~l~~~~~~--~-------~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~ 126 (382)
T PLN00144 56 TIPQVELAKRLVASSFA--D-------RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTL 126 (382)
T ss_pred CHHHHHHHHHHHhcCCC--C-------eEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccH
Confidence 34445566777776542 2 57999999999999999998764221100000 1234445555564433
Q ss_pred HHHHHcCCC---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc--CC--chHHH
Q 038818 187 KAAQIAGID---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV--DP--LGPLC 253 (486)
Q Consensus 187 ~a~~~~G~g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i--dp--l~~I~ 253 (486)
-+....+-. ...+..+|. -|+++|++.++. ..+.+|+++-..++.|.+ ++ +++|.
T Consensus 127 ~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~-----~~~aavi~eP~q~~gg~~~~~~~~~~~l~ 194 (382)
T PLN00144 127 GALALTSKEQYRTPFEPLMPGVTFVEY-------GNLEAARKLIQK-----GKTAAVFVEPVQGEGGIYPATKEFLQGLR 194 (382)
T ss_pred HHHhcCCCccccccCCCCCCCeEEeCC-------CCHHHHHHhcCC-----CCeEEEEEccccCCCCCccCCHHHHHHHH
Confidence 343333321 012233332 178999988742 235566666556664443 34 89999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
++|++||+++++|.++.++......+.....++ ..|. .+..|.++..+.+|+++.+++ .. +.+.. ...
T Consensus 195 ~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~PDi--~t~sK~l~~G~pig~v~~~~~-~~-~~~~~---~~~---- 262 (382)
T PLN00144 195 ALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV-EPDI--MTLAKPLAGGLPIGAVLVTEK-VA-SAINP---GDH---- 262 (382)
T ss_pred HHHHHcCCEEEEechhhCCCccchHhhhhhcCC-CCCE--EEecccccCCcceEEEEEcHH-HH-hccCC---CCC----
Confidence 999999999999999977533221111112233 3564 445799987788999888644 22 22210 000
Q ss_pred CCCCccCCCCccccCCCCCCchHH---HHHHHHhchHHHHHHHHHHHHHHHHHHH----HHhCCCCeEEecCCCeeEEEE
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKL---WLVLRSFGVANLRNFLRSHVRMAQLFQE----LVGGDNRFEIVAPRNFAVVCF 406 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~----~L~~~~~~~~~~~~~~~~v~f 406 (486)
..+.....+.+ .+++..+-.+.+ .++..++.+++.+ .+.+.|.+.-+.. ...++.+
T Consensus 263 -------------~~T~~~~pl~~aaa~a~l~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg-~G~~~~l 325 (382)
T PLN00144 263 -------------GSTFAGGPLVCNAALAVLDKISKPGF---LASVAKKGEYLRELLRRKLGGNPHVKEVRG-VGLLVGI 325 (382)
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHHHHHHHhhCCCceeeec-CceEEEE
Confidence 00111233333 334455533333 3344444444444 4444543321212 3334444
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+... ...+.+.+.++|+.+. +. ....++|+++. ...++++|+++++.|.+++.++
T Consensus 326 ~l~~~----------------~~~~~~~~~~~Gv~i~-~~--~~~~~lrl~p~-~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 326 QLDVP----------------AGPLVDACRDSGLLVL-TA--GKGDVVRLVPP-LVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred EecCc----------------cHHHHHHHHHCCeEEe-ec--CCCCEEEEeCC-CccCHHHHHHHHHHHHHHHHhc
Confidence 44211 2356777788898543 32 11368999983 4467889999999999988654
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-10 Score=112.87 Aligned_cols=322 Identities=11% Similarity=0.035 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+.+.++.+.|++++.-... ...+|+++||+||..|+..||... | ++.+|......|-...-+...
T Consensus 84 ~~~~~~lae~L~~~~p~~~~------~~v~f~~SGseA~e~AiklAr~~t-------g-r~~ii~~~~~YHG~t~~als~ 149 (445)
T PRK08593 84 HEPLVRLAKKLCELAPGDFE------KRVTFGLSGSDANDGIIKFARAYT-------G-RPYIISFTNAYHGSTYGSLSM 149 (445)
T ss_pred CHHHHHHHHHHHHhCCCCCC------CEEEECCchHHHHHHHHHHHHHhh-------C-CCeEEEECCCcCCCcHHHHhh
Confidence 34555666778887642210 157899999999999999998752 1 233444455566554444444
Q ss_pred cCCC----------CCCeEEEecCCCCC---cccCH-------HHHHHHHHHHHHCCCccEEEEeecCCccccccCC---
Q 038818 192 AGID----------PKNFRAIKTTKSSS---FTLTP-------ESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP--- 248 (486)
Q Consensus 192 ~G~g----------~~~v~~v~~d~~~~---~~~d~-------~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp--- 248 (486)
.+.. ...++.+|...... ...+. +++++.++... ....+.+|++.......|.+-|
T Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~ 228 (445)
T PRK08593 150 SGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPG 228 (445)
T ss_pred cCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHH
Confidence 3311 11344555431100 01122 33444333211 1123567788777777788766
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCccc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|.++|++||+++++|+++.|+.....-+.....++ ..|.+++ .|.++..++.|.++.+++ .. +.+.. ..+
T Consensus 229 yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv-~pDi~t~--gK~l~~G~p~gav~~~~~-i~-~~~~~-~~~ 302 (445)
T PRK08593 229 YFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI-TPDLMSF--GKSLAGGMPMSAIVGRKE-IM-ESLEA-PAH 302 (445)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCC-CCCEeee--cccccCCcccEEEEEcHH-HH-hhhcc-CCC
Confidence 99999999999999999999866422111010011133 4676654 688876567888887643 22 22321 111
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--CeeEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--NFAVV 404 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~~~~v 404 (486)
.. |. .+.+....+...++..+-.+ ++.++..++.++|++.|+++. ...++... ...++
T Consensus 303 ~~---------------T~-~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~ 363 (445)
T PRK08593 303 LF---------------TT-GANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSI 363 (445)
T ss_pred CC---------------CC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEE
Confidence 10 11 11111122233344444222 456677777777777776431 11111111 12233
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.+.+...... ..........+...+.++|+++ .+. +...+|++. ....|++|||+++++++++++++.+
T Consensus 364 gi~l~~~~~~------~~~~~~~~~~~~~~~~~~Gv~~-~~~---~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 364 GIDIVSDKKL------KTRDNEAALKICNYCFEHGVVI-IAV---AGNVLRFQP-PLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred EEEEecCCCc------CCCcHHHHHHHHHHHHHCCeEE-ecc---CCCEEEEEC-CCccCHHHHHHHHHHHHHHHHHHhc
Confidence 3433321100 0001344567888888899753 221 235799988 4677888999999999999887654
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-10 Score=115.73 Aligned_cols=330 Identities=10% Similarity=0.089 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.|.+++.-+- ...+|+++||+|+..|+..||..... .+..+ +..+|......|-...-+...
T Consensus 94 ~~~~~~lae~L~~~~p~~~-------~~v~f~~sGseAve~AlklAr~~~~~-~g~t~-r~~Ii~~~~~YHG~t~~a~s~ 164 (466)
T PRK07036 94 NAPAAELAAKLAELAPGDL-------NHVFLTTGGSTAVDSALRFVHYYFNV-RGRPA-KKHIITRGDAYHGSTYLTASL 164 (466)
T ss_pred CHHHHHHHHHHHHhCCCCc-------CEEEEeCCchHHHHHHHHHHHHHHHh-cCCCC-ccEEEEEcCccCCccHhhhcc
Confidence 4455667777887753221 25799999999999999999865321 11111 223444444455443333333
Q ss_pred cCCC---------CCCeEEEecCCC--CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 192 AGID---------PKNFRAIKTTKS--SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~--~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.|.. ...+..+|.... ....+. .+.+++.+.. ..+..+.+|++.......|.+-|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~y 242 (466)
T PRK07036 165 TGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGY 242 (466)
T ss_pred cCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHH
Confidence 3321 012444443210 000111 2345555542 12344667888877777788776
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhh-hcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCC--
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF-IDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTN-- 324 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~-~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~-- 324 (486)
+++|.++|++||+.+++|+++.|+.....-+... .-++ ..|.+++ -|.++..+ ++|.++.+++ .. +.+...
T Consensus 243 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv-~PDivt~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~ 317 (466)
T PRK07036 243 HARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI-QPDIITF--AKGLTSGYQPLGAVIISER-LL-DVISGPNA 317 (466)
T ss_pred HHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC-CCCEEEE--ccccccCccccEEEEEcHH-HH-HHHhcccC
Confidence 9999999999999999999987653221111100 1133 4687776 68887664 6888888754 22 233211
Q ss_pred cc--cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CC
Q 038818 325 PE--FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RN 400 (486)
Q Consensus 325 ~~--y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~ 400 (486)
+. |.. ..+-...++++.+++..+..-.-.++.++..++.++|++.|+++....++.. -.
T Consensus 318 ~~~~~~~-----------------~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~ 380 (466)
T PRK07036 318 KGNVFTH-----------------GFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGD 380 (466)
T ss_pred cCccccc-----------------CCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 00 110 0111234444444444431111124667777888888888865422222111 11
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
..++.+.+..+... .+. ..........+.+.+.++|.+. .+. + ..+|++. ....|++|||++++++.++++
T Consensus 381 Gl~~~ve~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~Gvl~-~~~---~-~~~~l~P-pl~it~~~id~~~~~l~~al~ 451 (466)
T PRK07036 381 HLMACVECVADKGS-KAL--LPEDIAIGQRIDRHCQERGLLV-RPL---E-HLCVLSP-PLIITRAQIDEIVAILRAAIE 451 (466)
T ss_pred ceEEEEEEccCccc-cCC--CCchhHHHHHHHHHHHHCCcEE-eec---C-CEEEEeC-CCcCCHHHHHHHHHHHHHHHH
Confidence 23444544322100 000 0011234567788888899753 321 2 3577765 235688899999999998887
Q ss_pred HHh
Q 038818 481 GIL 483 (486)
Q Consensus 481 ~l~ 483 (486)
++.
T Consensus 452 ~~~ 454 (466)
T PRK07036 452 ETA 454 (466)
T ss_pred HHH
Confidence 654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=113.87 Aligned_cols=331 Identities=14% Similarity=0.076 Sum_probs=182.1
Q ss_pred CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC-CCeEEEecC
Q 038818 101 VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI-SRLVVYGSD 179 (486)
Q Consensus 101 ~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~-~~~~v~~s~ 179 (486)
....|..+|...+||+. +++++|++. +++|..|+.++..+....... .|.+.. ....-+++.
T Consensus 66 GDD~Y~gdpSv~~Lee~----vael~G~E~---------alpthqGRgaE~Il~~~~~~~----~g~e~g~~~~~~~v~h 128 (467)
T TIGR02617 66 GDEAYSGSRSYYALAES----VKNIFGYQY---------TIPTHQGRGAEQIYIPVLIKK----REQEKGLDRSKMVAFS 128 (467)
T ss_pred CCcccccCchHHHHHHH----HHHHhCCce---------EEECCCCchHHHHHHHhhccc----ccccccccccccccce
Confidence 44578889998888865 577888763 588988999988776654431 010000 000002344
Q ss_pred CCchHH-HHHHHHcCCCCCCeEEEecC--------CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc-cccc---
Q 038818 180 QTHSAL-QKAAQIAGIDPKNFRAIKTT--------KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA-ITTV--- 246 (486)
Q Consensus 180 ~~H~s~-~~a~~~~G~g~~~v~~v~~d--------~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~-~G~i--- 246 (486)
..|+-- ...+.+.|+ .++.++.+ ..-+|.+|++.|+++|++.-. ..+++ +..+..+|. -|..
T Consensus 129 n~~fett~g~a~l~G~---~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~-~~i~~-v~~tlt~N~~GGqpvsl 203 (467)
T TIGR02617 129 NYFFDTTQGHSQINGC---TARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP-NNVPY-IVATITCNSAGGQPVSL 203 (467)
T ss_pred EEEEecchHHHHHcCc---eeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC-CCcee-eeeeEEEecCCCEEeCH
Confidence 455543 345667787 66665432 112479999999999986421 12232 333322233 3444
Q ss_pred CCchHHHHHHHHhCceEEeeccccch-hccCc---------cchhhhc-CCCCCCceeeccccccCCCCcceEEEeeCc-
Q 038818 247 DPLGPLCDIAKRYSIWVHVDAAYAGS-ACICP---------EFRHFID-GIEGADSFSLNAHKWFFTTLDCCCLWVKNP- 314 (486)
Q Consensus 247 dpl~~I~~i~~~~g~~lhvD~a~g~~-~~~~~---------~~~~~~~-~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~- 314 (486)
+.++++.++|++||+.+|+|||--.- +.+.. ..+.... -.+.+|++++++.|-+++|.| |++..+++
T Consensus 204 enlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~ 282 (467)
T TIGR02617 204 ANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDS 282 (467)
T ss_pred HHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchh
Confidence 66789999999999999999986442 22211 0111110 125899999999999999975 56667777
Q ss_pred --hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 315 --NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 315 --~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
+++.+.-.....|-. ...|+. -.+|-..+++ ..|... --.+.+++.....+||.+.|.+. |
T Consensus 283 ~~~l~~~~~~~~i~~EG--------f~tYGG---lagrd~ea~a--~Gl~e~---~~~~yl~~ri~qv~yl~~~L~~~-G 345 (467)
T TIGR02617 283 FFDVYTECRTLCVVQEG--------FPTYGG---LEGGAMERLA--VGLYDG---MNLDWLAYRINQVQYLVNGLEEI-G 345 (467)
T ss_pred HHHHHHHHHhhcccccC--------CcCcCc---hhHHHHHHHH--hhhhhc---ccHHHHHHHHHHHHHHHHHHHhC-C
Confidence 444443322222211 111110 0122122221 122221 22456677788889999999886 7
Q ss_pred eEEecCCCeeEEEE---EeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeE-------------CCEeEEE
Q 038818 393 FEIVAPRNFAVVCF---RVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMV-------------AGIYFIR 455 (486)
Q Consensus 393 ~~~~~~~~~~~v~f---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~-------------~~~~~lR 455 (486)
+.++. ....-|.+ ++.|.-. ..+ --.+.|.-.| .+.|+=.+.-+.+ ..-..+|
T Consensus 346 vpi~~-~Gghav~iDa~~~lphip-------~~~--fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~R 415 (467)
T TIGR02617 346 VVCQQ-AGGHAAFVDAGKLLPHIP-------ADQ--FPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLR 415 (467)
T ss_pred CcEEe-cCccEEEEehhhhCCCCC-------hhh--CcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceee
Confidence 87765 33332222 1212110 000 0122333333 3455421111111 1135799
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 456 FAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 456 ~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+++--..-|.+++|.+++.|..+.++
T Consensus 416 laipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 416 LTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred eccccccccHhHHHHHHHHHHHHHhh
Confidence 99844444677999999999988753
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-10 Score=116.92 Aligned_cols=307 Identities=14% Similarity=0.067 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
+..+.++.+.|.+++.. . ....|+++||+|+..|+..||... | +..+|......|-...-+...
T Consensus 92 ~~~~~~la~~l~~~~p~-~-------~~v~f~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~~~~ 155 (428)
T PRK12389 92 TELEIEFAKMLKEAIPS-L-------EKVRFVNSGTEAVMTTIRVARAYT-------G-RTKIIKFAGCYHGHSDLVLVA 155 (428)
T ss_pred CHHHHHHHHHHHHhCCC-C-------cEEEEeCCHHHHHHHHHHHHHHhh-------C-CCEEEEECCCcCCChHHHHHh
Confidence 34456667777777641 1 157899999999999999999862 1 233444454555443333333
Q ss_pred cCCCC----------------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chH
Q 038818 192 AGIDP----------------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGP 251 (486)
Q Consensus 192 ~G~g~----------------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~ 251 (486)
.|.+. ..+..+|. -|++.|++.+++. +..+.+|++.......|.+.| +++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~ 225 (428)
T PRK12389 156 AGSGPSTLGTPDSAGVPKSIAQEVITVPF-------NDIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEA 225 (428)
T ss_pred cCCcccccCCCCCCCCCCcccCceEEcCC-------CCHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence 33100 11222221 2789999988643 233567888777777888888 999
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCC-cccccC
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTN-PEFLRN 330 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~-~~y~~~ 330 (486)
|.++|++||+.+++|+++.|+ -....+....-++ ..|.+++ -|.++..++.|.++.+++ .. +.+... +.+..
T Consensus 226 l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv-~PDivt~--gK~lggG~Pi~av~~~~~-i~-~~~~~~~~~~~~- 298 (428)
T PRK12389 226 VNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGV-EPDLTAL--GKIIGGGLPIGAYGGRKD-IM-EQVAPLGPAYQA- 298 (428)
T ss_pred HHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCC-CCCeeee--chhhcCCCceeEEeEHHH-HH-hhhccCCCcccc-
Confidence 999999999999999999876 2211111111233 5777655 788887677888877543 22 233210 10110
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCC-eEEecCCCee
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNR-FEIVAPRNFA 402 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~-~~~~~~~~~~ 402 (486)
.+-...++.+. +++..+..+ +..++..++.++|++.|++ ++- ..+.... +
T Consensus 299 -----------------~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~--g 356 (428)
T PRK12389 299 -----------------GTMAGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAEKHGITITINRLK--G 356 (428)
T ss_pred -----------------cCCccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC--c
Confidence 11122334333 344444333 3566777788888887765 331 1222211 2
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++.+.+......... ............+.+.+.++|++. .+. +...+.. ....+++|||++++++++++++
T Consensus 357 ~~gi~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv~~-~~~---~~~~~~~---~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 357 ALTVYFTDEKVTNYD-QAERSDGEAFGKFFKLMLNQGINL-APS---KYEAWFL---TTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred EEEEEEeCCCCCChh-hhcccCHHHHHHHHHHHHHCCcEe-ecC---CCCCeee---cCCCCHHHHHHHHHHHHHHHHh
Confidence 434433221100000 000001234567788888889743 332 1112223 3466888999999999998865
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-11 Score=119.41 Aligned_cols=319 Identities=12% Similarity=0.035 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCe-EEEecCCCchHH---HH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRL-VVYGSDQTHSAL---QK 187 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~H~s~---~~ 187 (486)
+..+.++.+.|.++++.... ...|+++||||+..|+..||... ++. +|......|-.. ..
T Consensus 92 ~~~~~~la~~L~~~~~~~~~-------~v~f~~SGsEA~e~AiklAr~~t---------gr~~ii~~~~~yHG~td~~~~ 155 (433)
T PRK00615 92 SEQEILFAEELFSYLGLEDH-------KIRFVSSGTEATMTAVRLARGIT---------GRSIIIKFLGCYHGHADTLLQ 155 (433)
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEEcCccCCCCcccCc
Confidence 34555677888888754322 57999999999999999999762 233 333343444322 11
Q ss_pred HHHHcCCCCCCe-EEE---ecCCC-CC-cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc----hHHHHHHH
Q 038818 188 AAQIAGIDPKNF-RAI---KTTKS-SS-FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL----GPLCDIAK 257 (486)
Q Consensus 188 a~~~~G~g~~~v-~~v---~~d~~-~~-~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl----~~I~~i~~ 257 (486)
+....+-..... ... +.... .. -.-|+++|++.+++. +..+.+|++.......|.+-|. ++|.++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~ 232 (433)
T PRK00615 156 GISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCR 232 (433)
T ss_pred ccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHH
Confidence 111111100000 000 00000 00 012789999988643 2335578888777778888775 59999999
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
+||+.+++|+++.|+ .....+.....++ ..|.++ ..|.++..+++|.++.+++ . .+.+... .+....
T Consensus 233 ~~g~llI~DEv~tG~-R~G~~ga~~~~gv-~PDi~~--~gK~lggG~p~~av~~~~~-i-~~~~~~~-~~~~~~------ 299 (433)
T PRK00615 233 RTGSLSIMDEVVTGF-RVAQGGAAAIYHV-KPDITV--YGKILGGGLPAAAVVAHKS-I-MDHLAPE-GTIFQA------ 299 (433)
T ss_pred HcCCEEEEEcccccc-cccHhHHHHhcCC-CCCeEE--EcccccCCcceeeeeecHH-H-HhhhcCC-CCcccC------
Confidence 999999999999654 2211111111233 567766 4798886566888887654 2 2222111 111000
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCe--EEecCCCeeEEEEEeecCC
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRF--EIVAPRNFAVVCFRVLPSA 412 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~--~~~~~~~~~~v~f~~~~~~ 412 (486)
.|. .+.+....+...++..+..+ +..++..++.++|.+.|++. .++ .... ...++.+.+....
T Consensus 300 ------~T~-~g~p~~~aa~la~L~~i~~~---~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r--~G~~~~i~~~~~~ 367 (433)
T PRK00615 300 ------GTL-SGNPLAMAAGKASINLCREQ---GFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR--YGSMFSFFFNENR 367 (433)
T ss_pred ------CCC-cccHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe--eceEEEEEEeCCC
Confidence 010 01111223333444444332 34566666777775555431 123 3222 2334555554321
Q ss_pred CC-CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 413 SG-LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 413 ~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.. ..+. .....+...++...+.++|++ +.+..+.. . .+ +...|++|||+++++++++++.+.
T Consensus 368 ~~~~~~~--~~~~~~~~~~~~~~l~~~Gv~-~~~~~~~~-~----~l-s~~ht~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 368 PNNLAEA--QLSDIEAFQTFYQSAFSKGVY-LSPSPFEA-S----FL-SSAHSMENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred CCChHHH--hhCCHHHHHHHHHHHHHCCee-ecCccccc-c----ce-ecCCCHHHHHHHHHHHHHHHHHHh
Confidence 00 0000 000134456788888899974 33322111 1 22 234477799999999999998775
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-09 Score=110.73 Aligned_cols=313 Identities=14% Similarity=0.041 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+.+.++.+.|++++..... ...+|+++||+|+..|+..||... | +..+|......|-...-+...
T Consensus 82 ~~~~~~la~~l~~~~p~~~~------~~~~f~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~~s~ 147 (421)
T PRK09792 82 YESYVTLAEKINALAPVSGQ------AKTAFFTTGAEAVENAVKIARAHT-------G-RPGVIAFSGGFHGRTYMTMAL 147 (421)
T ss_pred CHHHHHHHHHHHHhCCCCCC------ceEEEeCChHHHHHHHHHHHHHhc-------C-CCeEEEECCCcCCccHHHHhh
Confidence 34455666777877643211 157889999999999999998641 1 222344444455443333333
Q ss_pred cCC--------C--CCCeEEEecCCCCCcc---cCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC-C---chHHHH
Q 038818 192 AGI--------D--PKNFRAIKTTKSSSFT---LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD-P---LGPLCD 254 (486)
Q Consensus 192 ~G~--------g--~~~v~~v~~d~~~~~~---~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id-p---l~~I~~ 254 (486)
.|. + ...++.+|...+.++. -+++.+++.+++.. ....+.+|+++...++.|..- | +++|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~ 226 (421)
T PRK09792 148 TGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRR 226 (421)
T ss_pred cCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHH
Confidence 221 1 1134455543211111 13467777775421 123356777777778888653 5 899999
Q ss_pred HHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCC
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD 334 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~ 334 (486)
+|++||+++++|.++.++......+....-++ ..|.++ ..|.++..++.|.++.+++ .. +.+.. ...
T Consensus 227 lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~pDi~t--~gK~l~~G~pigav~~~~~-i~-~~~~~--~~~------ 293 (421)
T PRK09792 227 LCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KPDLMT--MAKSLAGGMPLSGVVGNAN-IM-DAPAP--GGL------ 293 (421)
T ss_pred HHHHcCCEEEEeccccCCCCCCchhHHHhcCC-CCcEEE--eehhhcCCCceEEEEEcHH-HH-hccCC--CCc------
Confidence 99999999999999987533211111000112 467544 4799987788899887544 21 22210 000
Q ss_pred CCCccCCCCccccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCC--eeEEE
Q 038818 335 SKQVVDYKDWQITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRN--FAVVC 405 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~--~~~v~ 405 (486)
..+.....+.+. +.++.+..+ +..++..++.+++.+.|++ .|. +..+. ..++.
T Consensus 294 ------------~~T~~gnpl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~p~---v~~vrG~Gl~~~ 355 (421)
T PRK09792 294 ------------GGTYAGNPLAVAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKESVPA---IAAVRGLGSMIA 355 (421)
T ss_pred ------------CCCCCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhCCC---cceecccceEEE
Confidence 011122334433 444444332 4555666677777666654 332 22222 23455
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.+... ........+++.+.+.++|+++. +.. ....++|+.. ....++++|+++++.|.+++.
T Consensus 356 ie~~~~~~-------~~~~~~~~~~l~~~~~~~Gv~i~-~~g-~~~~~irl~P-~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 356 AEFNDPQT-------GEPSAAIAQKIQQRALAQGLLLL-TCG-AYGNVIRFLY-PLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EEecCCcc-------CCcchHHHHHHHHHHHHCCcEEe-ecC-CCCCEEEEeC-CCcCCHHHHHHHHHHHHHHHh
Confidence 55543210 00001345678888889998542 211 1146899987 345788899999999988764
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-10 Score=113.24 Aligned_cols=333 Identities=11% Similarity=0.056 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+.+.++.+.|++++..... ..+|+++||+|+..|+..||.+...+ +..+ +..++......|-...-+...
T Consensus 73 ~~~~~~lae~L~~~~p~~~~-------~v~f~~sGsEAve~AlklAr~~~~~r-g~t~-r~~ii~~~~~yHG~t~~als~ 143 (447)
T PRK06917 73 SEPAEKLAKKLSDLSPGDLN-------WSFFVNSGSEANETAMKIAIQHFQER-GIQG-KHKILSRWMSYHGITMGALSM 143 (447)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCChHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEECCCcCCccHHHHHh
Confidence 45566677888888743222 57899999999999999998764221 2111 223333444455443333333
Q ss_pred cCCCC---------CCeEEEecCCCCCc----------ccCHHHHHHHHHHHHHCCCccEEEEeecCCccc-cccCC---
Q 038818 192 AGIDP---------KNFRAIKTTKSSSF----------TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI-TTVDP--- 248 (486)
Q Consensus 192 ~G~g~---------~~v~~v~~d~~~~~----------~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~-G~idp--- 248 (486)
.|... ..+..+|....... .-+.+.|++.++... ...+..|++.-..... |.+-|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~iAAvi~EPi~g~~gG~~~p~~~ 221 (447)
T PRK06917 144 SGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIG--AEHIAAFIAEPIIGAAGAAVVPPKG 221 (447)
T ss_pred cCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccCcCceecCCHH
Confidence 33210 12233332110000 013456676665321 1235567776544433 34433
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+++|.++|++||+.+++|+++.|+.....-+.....++ ..|.+++ .|.++..+ +.|.++.+++ .. +.+.....
T Consensus 222 fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv-~PDi~~~--gK~l~~G~~Pi~a~~~~~~-i~-~~~~~~~~ 296 (447)
T PRK06917 222 YYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGV-EPDIMTL--GKGLGAGYTPIAATVVSDR-VM-EPILRGSR 296 (447)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCC-CCCEEEe--eehhccCCcceEEEEEcHH-HH-HHHhccCc
Confidence 89999999999999999999876422221111111233 4687766 78888765 6788887654 22 23321111
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--C
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--N 400 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~ 400 (486)
.+.. ..+.....+.+. .+++.+..+ ++.++..++.++|++.|+++. ...++... .
T Consensus 297 ~~~~----------------~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~ 357 (447)
T PRK06917 297 SIMS----------------GHTLSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGK 357 (447)
T ss_pred cccc----------------ccCCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeec
Confidence 1110 011122333333 344444222 356677777777777776531 12122111 1
Q ss_pred eeEEEEEeecCC-CCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSA-SGLGDGKANEGANELNRKLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 401 ~~~v~f~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
..++.+.+..+. .+.. .....+....+.+.+.++|.++ .+... .....+|++. ....|++|||+++++|
T Consensus 358 Gl~~~ie~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Gvl~-~~~~~~~~g~~~~~i~l~P-pl~it~~eid~~~~~l 431 (447)
T PRK06917 358 GLLIGVEFVADKKTKQP----FSKSQAVASELISVAAKNGLLL-YPAVAGQDGKEGDAVIIAP-PMTITYSELDELLSIF 431 (447)
T ss_pred ceEEEEEEeccCCcCCC----CcchhHHHHHHHHHHHhCCcEE-EecccccCCCCCCEEEEEC-CCcCCHHHHHHHHHHH
Confidence 234444443211 0000 0011245667888888999854 32211 1235788876 3467888999999999
Q ss_pred HHHHHHHhhc
Q 038818 476 QEKLDGILAT 485 (486)
Q Consensus 476 ~~~~~~l~~~ 485 (486)
.++++++..+
T Consensus 432 ~~~l~~~~~~ 441 (447)
T PRK06917 432 AKSVEEMMQK 441 (447)
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-10 Score=116.43 Aligned_cols=312 Identities=11% Similarity=0.020 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
..++.++++++++-+- ...+++.+||+|+..|+..||.....+ +..+ +..+|..+...|-...-+....|-
T Consensus 90 ~~~la~~l~~~~~~~~-------~~v~f~~sGseA~e~AlklAr~~~~~~-~~~~-r~~il~~~~~yHG~t~~~~s~~~~ 160 (427)
T TIGR00508 90 AIELCQKLVKMTPNAL-------DCVFLADSGSVAVEVALKMALQYWQAK-GEKN-RQKFLTIRSGYHGDTFGAMSVCDP 160 (427)
T ss_pred HHHHHHHHHhhCCCCC-------CEEEEeCCcHHHHHHHHHHHHHHHHhh-CCCC-ccEEEEEcCCcCCccHhhhcccCC
Confidence 4456677888764321 267999999999999999999864321 1111 234555565666443333332221
Q ss_pred C----------CCCeEEEecCCCCCc-----ccCHHHHHHHHHHHHHCCCccEEEEeecC-Cccccc----cCCchHHHH
Q 038818 195 D----------PKNFRAIKTTKSSSF-----TLTPESLQAAIDLDIQAGLIPLFLCATVG-TTAITT----VDPLGPLCD 254 (486)
Q Consensus 195 g----------~~~v~~v~~d~~~~~-----~~d~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~G~----idpl~~I~~ 254 (486)
. ...+..+|... ..+ .-|+++++++++.. +....+|++... ....|. .+++++|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~ 236 (427)
T TIGR00508 161 ENSMHSLYKGYLPEQIFAPAPQ-NRFDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQA 236 (427)
T ss_pred cccccccccccCCCCeEcCCCC-ccccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHH
Confidence 0 01222333211 011 12567788777642 223445666654 333343 367999999
Q ss_pred HHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCC--cccccCc
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTN--PEFLRNK 331 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~--~~y~~~~ 331 (486)
+|++||+.+++|+++.|+.....-+.....++ ..|.+++ .|.+++.+ +++.++.+++ . .+.+... ..+....
T Consensus 237 lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v-~pDi~~~--gK~l~gG~~p~~a~~~~~~-~-~~~~~~~~~~~~~~~~ 311 (427)
T TIGR00508 237 LCKQYDILLIADEIATGFGRTGKLFACEHAGV-VPDILCV--GKALTGGYMTLSATVTTDK-V-AQTISSGEAGCFMHGP 311 (427)
T ss_pred HHHHcCCEEEEeccccCCCcCCccchhhhcCC-CCCEEEe--chhhhcCcccceEEEEcHH-H-HHHHhcCCCCccccCC
Confidence 99999999999999865322111111111233 4677764 78887664 5677776644 2 2233211 1111110
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCeeEEEEEee
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFAVVCFRVL 409 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~~~ 409 (486)
|+. +.+.....+..++..+..+ +..++..++.++|++.|+++.....+.. ....++.+.+.
T Consensus 312 -------------T~~-g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~ 374 (427)
T TIGR00508 312 -------------TFM-GNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMY 374 (427)
T ss_pred -------------CCC-cCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEEC
Confidence 111 1122223334444444222 3467788888888888876522111111 12345555554
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+. ....+.+++.++|+. +.+. + ..+|++. ....|++|||++++++++++++
T Consensus 375 ~~~--------------~~~~~~~~l~~~Gv~-~~~~---~-~~l~~~p-pl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 375 KPV--------------NVEELQKKFVEQGVW-IRPF---G-KLIYVMP-PYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred Ccc--------------CHHHHHHHHHHCCeE-EEec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHhc
Confidence 221 124677788888974 3332 1 3688876 3457888999999999998753
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.5e-10 Score=112.61 Aligned_cols=333 Identities=12% Similarity=0.030 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++...++.+.|++++.-+. ...+|+++||+||..|+..||...... +..+ +..+|......|-...-+..+
T Consensus 89 ~~~~~~lae~L~~~~p~~~-------~~v~f~~sGsEAve~AlKlAr~~~~~~-g~t~-r~~ii~~~~~yHG~t~ga~s~ 159 (466)
T PRK07030 89 HEPVIELSERLVKITPPGL-------SRCFYADNGSSAIEVALKMSFHYWRNR-GKPR-KKRFVTLTNSYHGETLAAMSV 159 (466)
T ss_pred CHHHHHHHHHHHHhCCCCc-------CEEEEeCCcHHHHHHHHHHHHHHHHHh-CCCC-CcEEEEECCCcCcccHHHHhc
Confidence 4555667788888763211 257999999999999999998764221 1111 223444555556443334433
Q ss_pred cCCCC---------CCeEEEecCCCCC--c--------ccCHHHHHHHHHHHHHCCCccEEEEeec-CCccccccCC---
Q 038818 192 AGIDP---------KNFRAIKTTKSSS--F--------TLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAITTVDP--- 248 (486)
Q Consensus 192 ~G~g~---------~~v~~v~~d~~~~--~--------~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G~idp--- 248 (486)
.|... ..+..+|...... . .-+++.+++.++. .+..+..|++.- .....|.+-|
T Consensus 160 ~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~ 236 (466)
T PRK07030 160 GDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPV 236 (466)
T ss_pred cCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHH
Confidence 33210 1234444321000 0 1135667777753 223455677765 3555576644
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+++|.++|++||+.+++|+.+.|+.....-+....-++ ..|.+++ -|.+++.+ +.|.++.+++- . +.+....+
T Consensus 237 yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~ei-~-~~~~~~~~ 311 (466)
T PRK07030 237 YLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGI-RPDFLCL--SKALTGGYLPLAAVLTTDTV-Y-QAFYDDYP 311 (466)
T ss_pred HHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCC-CCCEEee--ehhccCCcccceEEEecHHH-H-HHHhcccc
Confidence 89999999999999999999876533221111112234 5788887 68888774 78888887652 2 22311100
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCeeEE
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFAVV 404 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v 404 (486)
-. . .+....+.....+++.+++..+-.-.-.++.++..++.++|++.|+++.....+.. -...++
T Consensus 312 ~~--------~-----~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~ 378 (466)
T PRK07030 312 TL--------R-----AFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTGMIL 378 (466)
T ss_pred cc--------c-----ccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEE
Confidence 00 0 00001111223444444443331111124567777888888888866422211211 122344
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+.+....... .+ .........++.+.+.++|.+. .+. + ..+|+.. ....|++|||.+++.+++.++++.
T Consensus 379 gie~~~~~~~~-~~--~~~~~~~~~~i~~~~~~~Gvl~-~~~---g-~~i~~~P-pl~it~~eid~~~~~l~~al~~~~ 448 (466)
T PRK07030 379 AIEMVQDKASK-TP--YPWQERRGLKVYQHALERGALL-RPL---G-SVVYFLP-PYVITPEQIDFLAEVASEGIDIAT 448 (466)
T ss_pred EEEeccCcccc-cc--CcchhHHHHHHHHHHHHCCeEE-Eec---C-CEEEEEC-CccCCHHHHHHHHHHHHHHHHHHh
Confidence 44443211000 00 0001123456788888899753 321 2 4688876 467889999999999999998873
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-10 Score=113.28 Aligned_cols=318 Identities=11% Similarity=-0.002 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
+..+.++.+.|++++...- ...+|+++||+|+..|+..||.....+ +..+ +..+|......|-.-.-+...
T Consensus 86 ~~~~~~lae~L~~~~p~~~-------~~v~f~~sGseAve~AlklAr~~~~~~-g~~~-r~~ii~~~~~yHG~t~~a~s~ 156 (429)
T PRK06173 86 HEPAVELAQKLLEILPPSL-------NKIFFADSGSVAVEVAMKMALQYQQAK-GEVQ-RTKFATIRSGYHGDTWHAMSV 156 (429)
T ss_pred CHHHHHHHHHHHhhCCCCc-------CEEEEeCCchHHHHHHHHHHHHHHHHh-CCCC-CcEEEEECCCcCCcchhhhcc
Confidence 3444566677777763211 257999999999999999999753222 2111 223444444455432222222
Q ss_pred cC--------C--CCCCeEEEecCCCC---C-cccCHHHHHHHHHHHHHCCCccEEEEeecC-CccccccCC----chHH
Q 038818 192 AG--------I--DPKNFRAIKTTKSS---S-FTLTPESLQAAIDLDIQAGLIPLFLCATVG-TTAITTVDP----LGPL 252 (486)
Q Consensus 192 ~G--------~--g~~~v~~v~~d~~~---~-~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~G~idp----l~~I 252 (486)
.| . ....+..+|..... . ..-+++.|++.|+. .+..+..|++.-. ....|.+-| +++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l 233 (429)
T PRK06173 157 CDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKA 233 (429)
T ss_pred CCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHH
Confidence 11 0 01123444432100 0 01246667777753 2234556676653 555566533 8999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCc--cccc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNP--EFLR 329 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~--~y~~ 329 (486)
.++|++||+++++|+++.|+.-...-+.....++ ..|.++ ..|.+++.+ ++|.++.+++ .. +.+.... .+..
T Consensus 234 ~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv~--~gK~l~gG~~p~~a~~~~~~-i~-~~~~~~~~~~~~~ 308 (429)
T PRK06173 234 RELCDQYGVLLIFDEIATGFGRTGKLFALEHAGV-VPDIMC--IGKALTGGYLTLSATITTEA-IA-QTICSGEAKCFMH 308 (429)
T ss_pred HHHHHHcCCeEEecchhcCCCcCCcchHHHhcCC-CCCEEE--eehhhhCCccccceEEecHH-HH-HHHhcCCCCcccc
Confidence 9999999999999999965321111111111233 478777 578887664 6787777654 21 2221100 0111
Q ss_pred CccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCeeEEEEE
Q 038818 330 NKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFAVVCFR 407 (486)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~ 407 (486)
.. |.. +.+....+...+++.+-.+ +..++..++.++|++.|+++.++..+.. -...++.+.
T Consensus 309 ~~-------------T~~-g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~ie 371 (429)
T PRK06173 309 GP-------------TFM-ANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVE 371 (429)
T ss_pred CC-------------CCC-cCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEE
Confidence 10 111 1112223334444444222 3467778888888888875423322221 134455565
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+..+ ....++.+.+.++|++ +.+. + ..+|+.. ....+++|||++++.|++++.++-
T Consensus 372 l~~~--------------~~~~~i~~~l~e~Gi~-v~~~---g-~~l~~~P-pl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 372 MKEP--------------VNMATLQPRFVEHGIW-VRPF---G-KLVYIMP-PFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred eCCc--------------ccHHHHHHHHHHCCeE-EEec---C-CEEEEeC-CccCCHHHHHHHHHHHHHHHHHHh
Confidence 5432 1134677788888974 3332 2 4799987 467889999999999999987653
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-11 Score=109.22 Aligned_cols=332 Identities=14% Similarity=0.126 Sum_probs=188.6
Q ss_pred HHHHHHhh-cCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 90 LGEMLSSG-FNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 90 ~~~~l~~~-~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.++++++. +..+.+.|+...+-..+-+.+.+++.+.+||.-+. .++.+|+|+..+.+++....-.+ ..+
T Consensus 54 ~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~-----~NIalTnGSQs~fFYlfNlF~G~-----~sd 123 (417)
T COG3977 54 LAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA-----QNIALTNGSQSAFFYLFNLFAGR-----RSD 123 (417)
T ss_pred HHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc-----ceeeecCCccchHHHHHHHhcCc-----cCC
Confidence 34555443 34456678777777888888999999999997542 37888998877777765543322 122
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEec------CCCC--CcccCHHHHHHHHHHHHHCCCccEEEEeecCC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKT------TKSS--SFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~------d~~~--~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gt 240 (486)
|..+.++ .+-..-|- .+.++|.+.=..|.. ++.+ .++.|.++|+ +.+.+ -+|+++-++
T Consensus 124 G~~k~il-lPLaPeYi-----GY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~------g~ic~SRPt 189 (417)
T COG3977 124 GTEKKIL-LPLAPEYI-----GYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGEST------GAICVSRPT 189 (417)
T ss_pred CcceeEe-eccChhhc-----cccccccCccceeeccCCcccccccceeeccCHHHcc--ccccc------ceEEecCCC
Confidence 3333333 33222211 112222111112211 1122 3677888886 33443 379999999
Q ss_pred cccccc---CCchHHHHHHHHhCceEEeeccccchhc--cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 241 TAITTV---DPLGPLCDIAKRYSIWVHVDAAYAGSAC--ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 241 t~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~--~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
|+||.+ +.+.+|.+++++||+.+++|.|||..+- .+.+....+ ..--.+++|..|.+....-||+++..++
T Consensus 190 NPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w---~~NiilC~SLSK~GLPG~R~GIiIane~- 265 (417)
T COG3977 190 NPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLW---NENIILCMSLSKLGLPGSRCGIIIANEK- 265 (417)
T ss_pred CCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccC---CCCEEEEeehhhcCCCCcceeEEEccHH-
Confidence 999988 6789999999999999999999987542 111111111 1222568899998887778998776544
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHH----HHHHhchHHHHHHHHHH-HHHHHHHHHHHhCC
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL----VLRSFGVANLRNFLRSH-VRMAQLFQELVGGD 390 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~----~l~~~g~~g~~~~~~~~-~~~a~~l~~~L~~~ 390 (486)
.. ++++....-+ ++..+|...+++.-+ .|..+...-++-..++. ...-..|+..|-+.
T Consensus 266 vi-qaitnmn~ii----------------sLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~ 328 (417)
T COG3977 266 VI-QAITNMNGII----------------SLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY 328 (417)
T ss_pred HH-HHHHhcccee----------------eecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 32 2333222111 122233222222111 01111111111111111 11222334444433
Q ss_pred CCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE---------CCEeEEEEEecC
Q 038818 391 NRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV---------AGIYFIRFAVGA 460 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---------~~~~~lR~~~~~ 460 (486)
.+.+ ..|+..++.+ ++..- ......|+++|.+.|++++++..+ +.+.++|++..
T Consensus 329 -~~~i-HkpEGAIFlWLWf~dL-------------PItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~- 392 (417)
T COG3977 329 -RCLI-HKPEGAIFLWLWFKDL-------------PITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV- 392 (417)
T ss_pred -ceee-ecCCcceeehhhhccC-------------CCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecC-
Confidence 2333 4667777655 44332 223567899999999987766543 23678998763
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
-+++.|++-+..|.+.++++-.
T Consensus 393 --~~~~~ie~Gva~lae~ve~~yq 414 (417)
T COG3977 393 --PEPEKIEKGVAILAEEVERAYQ 414 (417)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHh
Confidence 3677899999999988877643
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.6e-10 Score=113.20 Aligned_cols=315 Identities=15% Similarity=0.079 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
.++.+.++.+.|+++++...+ ..+|++|||+|+..|+..||... | +..+|......|-....+..
T Consensus 111 ~~~~~~~lae~L~~~~p~~~~-------~v~f~~sGseAve~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~a~s 175 (459)
T PRK06082 111 TNETAIECAEKLTEIAGGELN-------RVLFAPGGTSAIGMALKLARHIT-------G-NFKVVSLWDSFHGASLDAIS 175 (459)
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEECCCcHHHHHHHHHHHHHhc-------C-CCEEEEEeCCCcCccHHHHh
Confidence 345566777888888753222 57999999999999999998652 1 23344455556655444444
Q ss_pred HcCCC---------CCCeEEEecCCCCC--c-cc------CHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---c
Q 038818 191 IAGID---------PKNFRAIKTTKSSS--F-TL------TPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---L 249 (486)
Q Consensus 191 ~~G~g---------~~~v~~v~~d~~~~--~-~~------d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l 249 (486)
..|-. ...+..+|....-. + .. +++.|++.++. .+ .+.+|++.......+.+-| +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~-~vAavIvEPv~g~g~~~~~~~yl 251 (459)
T PRK06082 176 VGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK---EG-GIGAFIAEAVRNTDVQVPSKAYW 251 (459)
T ss_pred hcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc---CC-CEEEEEECCccCCCCcCCCHHHH
Confidence 43320 01234444221000 0 01 13557776653 12 3456776655544333444 8
Q ss_pred hHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcccc
Q 038818 250 GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 250 ~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
++|.++|++||+.+++|+++.|+.....-+....-++ ..|.++ .-|.++..+ +.|.++.+++ . ...+. ..+.
T Consensus 252 ~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv-~PDiv~--~gKgl~gG~~P~~av~~~~~-i-~~~~~--~~~~ 324 (459)
T PRK06082 252 KRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI-EPDILC--IGKGLGGGLVPIAAMITKDK-Y-NTAAQ--ISLG 324 (459)
T ss_pred HHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC-CCCEEE--ecccccCCCCcceEEEEcHH-H-Hhhcc--CCCC
Confidence 9999999999999999999877432211111111234 578877 479988764 7888888764 2 11111 0000
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecC--CCee
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAP--RNFA 402 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~--~~~~ 402 (486)
. .+.....+.+.+ ++..+-.+ +..++..++.++|.+.|+++. ...++.. -...
T Consensus 325 --------------~----~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl 383 (459)
T PRK06082 325 --------------H----YTHEKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGL 383 (459)
T ss_pred --------------C----CCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccc
Confidence 0 111223333333 34444222 456777788888888886531 1111211 1223
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++.+.+..+.. ......+....+...+.++|.+. .+. +...+|++. ....|++|||++++++++++.++
T Consensus 384 ~~~ve~~~~~~------~~~~~~~~~~~~~~~~~~~Gvl~-~~~---~~~~i~~~P-pl~it~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 384 LWGVELVTDRH------TKERAYDEAEAVLYRCLNNGLSF-KVS---QGNVIQLSP-PLIITREELTQALAILEEAIAKI 452 (459)
T ss_pred eeEEEEccCcc------ccCccHHHHHHHHHHHHhCCCEE-Eec---CCCEEEEeC-CCccCHHHHHHHHHHHHHHHHHH
Confidence 44444432110 00011234567778888899854 322 236789876 23568889999999999998876
Q ss_pred h
Q 038818 483 L 483 (486)
Q Consensus 483 ~ 483 (486)
.
T Consensus 453 ~ 453 (459)
T PRK06082 453 C 453 (459)
T ss_pred h
Confidence 4
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-10 Score=113.41 Aligned_cols=331 Identities=13% Similarity=0.050 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEc-CCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQ-GTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t-~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
+..+.++.+.+.+++.-+-. .....+|+ ++||||+..|+..||... | +..+|......|-...-+..
T Consensus 105 ~~~~~~la~~L~~~~p~~~~----~~~~v~f~~~SGSEAve~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~als 172 (464)
T PRK06938 105 TPVKDQFVQDLFASLPEAFA----REAKIQFCGPTGTDAVEAALKLVKTAT-------G-RSTVLSFQGGYHGMSQGALS 172 (464)
T ss_pred CHHHHHHHHHHHHhCccccc----ccceEEEeCCCcHHHHHHHHHHHHHhh-------C-CCeEEEECCccCCccHHHHh
Confidence 34444555666666531100 00024454 799999999999998752 1 23344445455544333443
Q ss_pred HcCC-------C--CCCeEEEecCCCCCc----------ccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---
Q 038818 191 IAGI-------D--PKNFRAIKTTKSSSF----------TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP--- 248 (486)
Q Consensus 191 ~~G~-------g--~~~v~~v~~d~~~~~----------~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp--- 248 (486)
..|- + ...+..+|....... ..+.+.+++.+++.......+..|++.-.....|.+-|
T Consensus 173 ~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~ 252 (464)
T PRK06938 173 LMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIE 252 (464)
T ss_pred hcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHH
Confidence 3321 0 113455554311000 12467788888643211123566777766666676644
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCccc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
++++.++|++||+.+++|+.+.|+.....-+....-++ ..|.+++ -|.++..++.|.++.+++ + +.+. +..
T Consensus 253 yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv-~PDiv~~--gKglggG~PlsAv~~~~~--~-~~~~--~~~ 324 (464)
T PRK06938 253 WLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI-IPDVVVL--SKAIGGSLPLAVVVYREW--L-DTWQ--PGA 324 (464)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC-CCCEEEe--eccccCCCceEEEeehhH--h-hccC--CCC
Confidence 89999999999999999999877532211111111233 5788887 688887788999998754 2 2221 111
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecC--CCeeEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAP--RNFAVV 404 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~--~~~~~v 404 (486)
. ..+-...++++.+++..+..-.-.+..++..++.++|.+.|+++. ...++.. -...++
T Consensus 325 ~------------------~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~ 386 (464)
T PRK06938 325 H------------------AGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLML 386 (464)
T ss_pred C------------------CCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEE
Confidence 0 011112344444444433111112355666777777777775531 1111211 112344
Q ss_pred EEEeecCCCCCCCCC-CccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 405 CFRVLPSASGLGDGK-ANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+.+...... .+.. ...........+.+.+.++|.++ .+.. .....+|+.. ....|++|||++++++++++.+++
T Consensus 387 gie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Gll~-~~~g-~~~~~l~~~P-pl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 387 GVEIVDPQGE-PDALGHPPANGELASLIQRECLRRGLIL-ELGG-RHGSVVRFLP-PLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred EEEeccCccc-ccccccCCccHHHHHHHHHHHHHCCeEE-eecC-CCCCEEEEEC-CCccCHHHHHHHHHHHHHHHHHHh
Confidence 4444321100 0000 00001234567788888899754 3221 1135799886 457788999999999999998876
Q ss_pred h
Q 038818 484 A 484 (486)
Q Consensus 484 ~ 484 (486)
+
T Consensus 463 ~ 463 (464)
T PRK06938 463 A 463 (464)
T ss_pred c
Confidence 5
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-09 Score=111.23 Aligned_cols=334 Identities=14% Similarity=0.103 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+...++.+.|++++.-..+ ..+|+++||+|+..|+..||.....+ +..+ +..+|......|-...-+...
T Consensus 72 ~~~~~~lae~L~~~~p~~~~-------~v~f~~sGsEAve~AlklAr~~~~~~-g~~~-r~~Ii~~~~~YHG~t~~a~s~ 142 (443)
T PRK07483 72 TEPAEALADRLVAAAPAGLE-------HVYFVSGGSEAVEAALKLARQYFVEI-GQPQ-RRHFIARRQSYHGNTLGALAI 142 (443)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEcCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEECCCcCCcCHHHhhh
Confidence 34445666777777632111 57899999999999999999764221 2111 222343454555443333333
Q ss_pred cCC---------CCCCeEEEecCCCCCccc-------------CHHHHHHHHHHHHHCCCccEEEEeecCCc-cccccCC
Q 038818 192 AGI---------DPKNFRAIKTTKSSSFTL-------------TPESLQAAIDLDIQAGLIPLFLCATVGTT-AITTVDP 248 (486)
Q Consensus 192 ~G~---------g~~~v~~v~~d~~~~~~~-------------d~~~L~~~l~~~~~~g~~p~~vv~~~gtt-~~G~idp 248 (486)
.|- ....+..+|... .++. .+++|++++... ....+..|++..... ..|.+-|
T Consensus 143 s~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~~gG~~~~ 218 (443)
T PRK07483 143 GGNAWRREPFAPLLIEAHHVSPCY--AYREQRAGESDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGATAGAVPP 218 (443)
T ss_pred cCCcccccccCCCCCCCEEeCCCc--cccccccCCCHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccCcCCeEeC
Confidence 221 111233443221 1111 125566655421 112345666665443 2465554
Q ss_pred ----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcC
Q 038818 249 ----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALST 323 (486)
Q Consensus 249 ----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~ 323 (486)
+++|.++|++||+.+++|+++.|+.....-+.....++ ..|.+++ -|.++..+ +.|.++++++- .+.+..
T Consensus 219 ~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~gG~~Pi~av~~~~~i--~~~~~~ 293 (443)
T PRK07483 219 VPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV-APDLVTI--AKGLGAGYQPIGAVLASDRI--YDAIAD 293 (443)
T ss_pred CHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC-CCCeeee--hhhhccCccccEEEEEcHHH--HHHHhc
Confidence 89999999999999999999876532211111111233 5788887 68888765 78888887652 222321
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEecCC--C
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD-NRFEIVAPR--N 400 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~--~ 400 (486)
.+..+.. ..+-....+++.++++.+..-.-.+..++..++.++|++.|+++ ....++... .
T Consensus 294 ~~~~~~h----------------~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~ 357 (443)
T PRK07483 294 GSGFFQH----------------GHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGR 357 (443)
T ss_pred CCCcccc----------------CCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeec
Confidence 1111100 01112344444444444311111245666777777777777542 122112111 1
Q ss_pred eeEEEEEeecCC-CCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-eECC--EeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSA-SGLGDGKANEGANELNRKLLESINASGQLYVSHG-MVAG--IYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 401 ~~~v~f~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~--~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
..++.+.+..+. .+.. ..........+.+.+.++|.++.... ..++ ...+|+.. ....+++|||+++++|+
T Consensus 358 Glm~gie~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~P-pL~it~~eid~~~~~l~ 432 (443)
T PRK07483 358 GLFVGVELVADRATKAP----FDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAP-PFIITAAQIDEIVERLG 432 (443)
T ss_pred ccEEEEEEeecccccCC----CCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 233444443211 0000 00002345677888889998543221 1111 25799887 45779999999999999
Q ss_pred HHHHHHhh
Q 038818 477 EKLDGILA 484 (486)
Q Consensus 477 ~~~~~l~~ 484 (486)
++++++.+
T Consensus 433 ~~l~~~~~ 440 (443)
T PRK07483 433 DAIDAALA 440 (443)
T ss_pred HHHHHHHh
Confidence 99987764
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-10 Score=112.94 Aligned_cols=333 Identities=12% Similarity=0.028 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+.|.+++.-.... .+....+|+++||+||..|+.+||...... +..+ +..+|......|-...-+....
T Consensus 107 ~~~~~lae~L~~~~p~~~~~--~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~-g~~~-r~~ii~~~~syHG~t~gals~~ 182 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGR--APLSKVFYADNGSAGVEVALKMAFHYFHNR-GEHR-RTRFIALENGYHGETIGALAVG 182 (472)
T ss_pred HHHHHHHHHHHHhCCCcccC--CCCCEEEEeCCchHHHHHHHHHHHHHHHhc-CCCC-CcEEEEECCCcCCCchhhhhcc
Confidence 44556667788776321000 001257999999999999999999864322 2111 2334445555554433333333
Q ss_pred CCC---------CCCeEEEecCCCCC--c--------ccCHHHHHHHHHHHHHCCCccEEEEeec-CCccccccCC----
Q 038818 193 GID---------PKNFRAIKTTKSSS--F--------TLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAITTVDP---- 248 (486)
Q Consensus 193 G~g---------~~~v~~v~~d~~~~--~--------~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G~idp---- 248 (486)
|.+ ...+..+|...... . .-+++.+++.++. .+..+..|++.- .....|.+-|
T Consensus 183 ~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~f 259 (472)
T PRK08742 183 DIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAY 259 (472)
T ss_pred CCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHH
Confidence 221 01234444421000 0 0135667777652 223455666665 2445566533
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
++++.++|++||+.|++|+.+.|+.....-+.....++ ..|.+++ -|.+++.+ +.|.++.+++- .+.+.....
T Consensus 260 l~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv-~PDiv~~--gKgl~gG~~Plaav~~~~ei--~~~~~~~~~- 333 (472)
T PRK08742 260 LRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV-MPDLLCL--SKGLTGGFLPLSAVLATQQL--YDAFLDDSR- 333 (472)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC-CCCEEEE--cccccCCCCCcceeeccHHH--HHHhhccCc-
Confidence 89999999999999999999876533221111111234 5788887 68887664 68888887552 122321100
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHH---HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--Cee
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVL---RSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFA 402 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l---~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~ 402 (486)
.. .+....+.....+++.+++ ..+-.++ +.++..++.++|++.++......++.+. ...
T Consensus 334 --~~-----------~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl 397 (472)
T PRK08742 334 --ER-----------AFLHSHSYTGNPLACAAALATLDIFADDD---VIARNQPTAARMTQLAAQIGEHPHVADVRQAGM 397 (472)
T ss_pred --cC-----------ccCcCCCCCccHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHhcCCCeeeEeccce
Confidence 00 0000111122344444444 3343333 4455556666666555433222122111 123
Q ss_pred EEEEEeecCCCCCCCCCCc-cchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKAN-EGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++.+.+..+... .+. ........++.+.+.++|.+. .+. + +.+|+.. ....|++|||++++.|++++++
T Consensus 398 ~~giel~~~~~~----~~~~~~~~~~~~~~~~~~~~~Gll~-~~~---g-~vi~~~P-pL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 398 VVAFELTRGGNK----RTPFPPAARVGLHAYRAALARGVVL-RPL---G-DVLYWMP-PYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred EEEEEeccCccc----cccCCchhHHHHHHHHHHHHCCeEE-Eec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 444444321100 000 001233456777888889754 221 2 4799987 4678999999999999999988
Q ss_pred Hhh
Q 038818 482 ILA 484 (486)
Q Consensus 482 l~~ 484 (486)
+++
T Consensus 468 ~~~ 470 (472)
T PRK08742 468 AVA 470 (472)
T ss_pred Hhc
Confidence 764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-09 Score=112.07 Aligned_cols=336 Identities=13% Similarity=0.067 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
+..+.++.+.|+++++-+.. ...+|+++||||+..|+.+||..... .|..+ +..+|......|-...-+...
T Consensus 85 ~~~~~~lae~L~~~~~~~~~------~~v~f~~sGsEAve~AlklAr~~~~~-~g~~~-r~~ii~~~~~yHG~t~ga~s~ 156 (449)
T PRK07481 85 HPRAIELSYELIDMFAPEGM------RRVFFSSGGSDSVETALKLARQYWKV-RGQPE-RTKFISLKQGYHGTHFGGASV 156 (449)
T ss_pred CHHHHHHHHHHHHhcCCCCC------CEEEEcCchHHHHHHHHHHHHHHHHh-cCCCC-CcEEEEECCCcCCcchhhhcc
Confidence 34455667788888742111 25789999999999999999875421 12111 223444454555433222222
Q ss_pred cCCC---------CCCeEEEecCCCC--Ccc-cCHHHHHHHHHHH----H--HCCCccEEEEeecCCccccccCC----c
Q 038818 192 AGID---------PKNFRAIKTTKSS--SFT-LTPESLQAAIDLD----I--QAGLIPLFLCATVGTTAITTVDP----L 249 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~--~~~-~d~~~L~~~l~~~----~--~~g~~p~~vv~~~gtt~~G~idp----l 249 (486)
.|-. ...+..++....- .+. -|++.+++.+.+. . ..+..+.+|++.-.....|.+-| +
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl 236 (449)
T PRK07481 157 NGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFW 236 (449)
T ss_pred CCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHH
Confidence 2210 1123444332100 011 2455544333211 1 12234667888777777777655 8
Q ss_pred hHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcccc
Q 038818 250 GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 250 ~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
++|.++|++||+.+++|+.+.|+.....-+.....++ ..|.+++ -|.++..+ +.|.++++++ .. +.+......
T Consensus 237 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~-i~-~~~~~~~~~- 310 (449)
T PRK07481 237 PLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV-KPDIMCL--AKGITSGYVPLGATMVNAR-IA-DAFEANADF- 310 (449)
T ss_pred HHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC-CCCEEEE--eecccCCCcCceEEEEcHH-HH-HHHhccCcc-
Confidence 9999999999999999999876532211111111233 4788777 68887664 6888888764 22 233211000
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--CeeEEE
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--NFAVVC 405 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~~~~v~ 405 (486)
. .. .....+.....+.+.++++.+..-.-.+..++..++.++|.+.|+++. ...++... ...++.
T Consensus 311 -~------~~-----~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~g 378 (449)
T PRK07481 311 -G------GA-----IMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLA 378 (449)
T ss_pred -c------cc-----cccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEE
Confidence 0 00 000111122344444444433211112455667777777777776541 12222111 123444
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.+..+... .+. .........++.+.+.++|.+. .+. + ..+|++. ....|++|||+++++|+++++++
T Consensus 379 i~l~~~~~~-~~~--~~~~~~~~~~~~~~~~~~Gvl~-~~~---g-~~i~l~P-pl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 379 LDLVADKAT-REP--IDPSKGYANAVADVARENGVLV-RPS---G-TKIILSP-PLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred EEecccccc-cCC--CCchhHHHHHHHHHHHhCCeEE-Eec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 444321100 000 0001234567788888899753 322 2 2478775 23468899999999999998765
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-10 Score=113.98 Aligned_cols=315 Identities=10% Similarity=-0.018 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+...++.+.|+++++-+.+ ..+++++||||+..|+..||...... + .+ +..+|......|-...-+...
T Consensus 85 ~~~~~~la~~L~~~~p~~~~-------~v~f~~SGsEAve~AlklAr~~~~~~-g-~~-r~kii~~~~~yHG~t~~a~s~ 154 (428)
T PRK07986 85 HPPAIELCRKLVAMTPQPLE-------CVFLADSGSVAVEVAMKMALQYWQAK-G-EP-RQRFLTLRHGYHGDTFGAMSV 154 (428)
T ss_pred CHHHHHHHHHHHhhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHHHHhc-C-CC-CcEEEEECCCcCCCcHhhhcc
Confidence 34455667778887642212 57999999999999999999753211 1 11 223444555555433222222
Q ss_pred cCCC----------CCCeEEEecCCCC---Cc-ccCHHHHHHHHHHHHHCCCccEEEEeecC-Ccccccc----CCchHH
Q 038818 192 AGID----------PKNFRAIKTTKSS---SF-TLTPESLQAAIDLDIQAGLIPLFLCATVG-TTAITTV----DPLGPL 252 (486)
Q Consensus 192 ~G~g----------~~~v~~v~~d~~~---~~-~~d~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~G~i----dpl~~I 252 (486)
.|-. ...+..+|..... .+ .-|+++|++.|+.. +....+|++... ....|.+ +.+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l 231 (428)
T PRK07986 155 CDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRV 231 (428)
T ss_pred cCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHH
Confidence 2210 0123344432100 00 23677888888632 223445666543 3444543 339999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCc-ccccC
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNP-EFLRN 330 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~-~y~~~ 330 (486)
.++|++||+++++|+++.|+.....-+.....++ ..|.++ ..|.+++. .++|.++.+++ . .+.+.... ..+..
T Consensus 232 ~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv-~PDi~t--~gK~l~gG~~p~~av~~~~~-i-~~~~~~~~~~~~~~ 306 (428)
T PRK07986 232 RKLCDREGILLIADEIATGFGRTGKLFACEHAGI-APDILC--LGKALTGGTMTLSATLTTRE-V-AETISNGEAGCFMH 306 (428)
T ss_pred HHHHHHcCCEEEEeccccCCccCCCeeeecccCC-CCCEEE--echhhhCCcccCcchhchHH-H-HHHhhcCCCCcccc
Confidence 9999999999999999866422111111111233 467776 47888766 36777777654 2 22332110 00000
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--CeeEEEEEe
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFAVVCFRV 408 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~~v~f~~ 408 (486)
. .|+. +.+....+...+++.+-.+ +..++..++.++|++.|+++.....+... ...++.+.+
T Consensus 307 ~------------~T~~-g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~ 370 (428)
T PRK07986 307 G------------PTFM-GNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVET 370 (428)
T ss_pred C------------CCCC-cCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEe
Confidence 0 0111 1112223334444444323 35677778888888888764222212111 123444444
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
..+ ....++.+.+.++|.++ .+. + ..+|++. ....|++||++++++|.++++
T Consensus 371 ~~~--------------~~~~~~~~~l~~~Gl~~-~~~---g-~~i~~~P-pl~it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 371 TRP--------------VNMAALQRFFVEQGVWI-RPF---G-KLIYLMP-PYIILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred CCc--------------ccHHHHHHHHHHCCcEE-Eec---C-CEEEEeC-CCCCCHHHHHHHHHHHHHHHh
Confidence 321 01346777888889753 322 2 4789876 457889999999999999875
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-09 Score=120.64 Aligned_cols=321 Identities=12% Similarity=0.065 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+.+.++.+.|++++.-+.+ ..+|+++|||||..|+..||... | ++.+|......|-...-+...
T Consensus 662 ~~~~~~lAe~L~~~~p~~~~-------~v~f~nSGsEA~e~AlklAr~~t-------G-r~~ii~~~~~YHG~t~~a~s~ 726 (1013)
T PRK06148 662 HDAIVAYAERLTATLPDGLT-------VAFFVNSGSEANSLALRLARAHT-------G-QRDAIVLDHAYHGTTTELIDL 726 (1013)
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHhc-------C-CCeEEEEcCCccCCCcchhhc
Confidence 44555667778887642212 57899999999999999999752 1 223344444455332222221
Q ss_pred cC--------CC-CCCeEEEecCCC--CCcc-cC-------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 192 AG--------ID-PKNFRAIKTTKS--SSFT-LT-------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G--------~g-~~~v~~v~~d~~--~~~~-~d-------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.| .+ ...+..++.... ..+. -| .+.++++++.....+..+..|++.......|.+-|
T Consensus 727 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~y 806 (1013)
T PRK06148 727 SPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGY 806 (1013)
T ss_pred CchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHH
Confidence 11 11 113333332100 0011 11 24567666543333445677888777777787766
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCcc-chhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPE-FRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~-~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
++++.++|++||+.+++|+++.|+...... +.....++ ..|.+++ -|.++..++.|.++.+++ . .+.+.....+
T Consensus 807 l~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv-~PDivt~--gK~lggG~Plgav~~~~e-i-~~~~~~g~~~ 881 (1013)
T PRK06148 807 LREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGV-VPDIVTM--GKPIGNGHPMGAVVTTRE-I-ADSFDNGMEY 881 (1013)
T ss_pred HHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCC-Ccceeee--cccccCCcceEEEEEcHH-H-HhhccCCCcc
Confidence 999999999999999999998765322211 11111233 5788777 699887788999998744 2 2223210000
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCC--Ce
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPR--NF 401 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~--~~ 401 (486)
..+-....+++.++ +..+-.+ ++.++..++.++|++.|+++. ...++... ..
T Consensus 882 -------------------~~Tf~gnpla~aaa~a~L~~i~~e---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~G 939 (1013)
T PRK06148 882 -------------------FNTFGGNPVSCAIGLAVLDIIEDE---DLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMG 939 (1013)
T ss_pred -------------------ccCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeec
Confidence 01112234444444 4434333 455667777788877776531 11111111 12
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.++.+.+..+.. ......+....+.+.+.++|+++ .+... ....+|+.. ....|++|||+++++|++++.+
T Consensus 940 l~~gvel~~~~~------~~~~~~~~~~~i~~~~~~~Gvl~-~~~g~-~~~vlr~~P-pl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 940 LFLGIELVTDRK------TKAPATAIARYVKNGARERGILI-GTEGP-HDNVLKIRP-PLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred eEEEEEecCCcc------ccCccHHHHHHHHHHHHhCCeEE-eccCC-CCCEEEEeC-CccCCHHHHHHHHHHHHHHHHH
Confidence 334444432110 00111345667888888999754 33211 136799987 4678889999999999999877
Q ss_pred Hh
Q 038818 482 IL 483 (486)
Q Consensus 482 l~ 483 (486)
+.
T Consensus 1011 ~~ 1012 (1013)
T PRK06148 1011 AL 1012 (1013)
T ss_pred Hh
Confidence 64
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-10 Score=109.99 Aligned_cols=282 Identities=13% Similarity=0.057 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC-
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG- 193 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G- 193 (486)
..++.+.++++.|.+ ..+++++||+|+..|+.++|... | ++.+|..+...|-...-+....+
T Consensus 68 ~~~la~~l~~~~~~~---------~v~~~~SGseA~e~Alklar~~~-------g-r~~Ii~~~~syHG~t~~~ls~~~~ 130 (364)
T PRK04013 68 KEEMLEELSKWVNYE---------YVYMGNSGTEAVEAALKFARLYT-------G-RKEIIAMTNAFHGRTMGALSATWK 130 (364)
T ss_pred HHHHHHHHHhhcCCC---------EEEEeCchHHHHHHHHHHHHHHh-------C-CCEEEEECCccccCchhhccCCCC
Confidence 334445566666543 47899999999999999998752 1 13344444445544333332221
Q ss_pred ------CC--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC-C---chHHHHHHHHhCc
Q 038818 194 ------ID--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD-P---LGPLCDIAKRYSI 261 (486)
Q Consensus 194 ------~g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id-p---l~~I~~i~~~~g~ 261 (486)
.+ ...+..+|. -|++.+++.+.+. +..|++.......|.+- | +++|.++|++||+
T Consensus 131 ~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~~~------~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gi 197 (364)
T PRK04013 131 PKYREDFEPLVPGFKHIPF-------NDVEAAKEAITKE------TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGA 197 (364)
T ss_pred cccccCCCCCCCCcEEecC-------CCHHHHHHHhcCC------cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 11 012233332 1678888887532 34677776655556553 3 9999999999999
Q ss_pred eEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 262 WVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
.++.|+++.|+ -...-+....-++ ..|.+++ -|.++..++.|.++.+++- . +.....
T Consensus 198 llI~DEv~tG~-RtG~~~a~~~~gv-~PDiv~~--gK~lggG~P~~a~~~~~~~--~------~~~~~~----------- 254 (364)
T PRK04013 198 LLIADEVQSGL-RTGKFLAIEHYKV-EPDIVTM--GKGIGNGVPVSLTLTNFDV--E------RGKHGS----------- 254 (364)
T ss_pred EEEEechhhcC-CCCchhHHHhcCC-CCCEEEe--cccccCCceeEEEEecccc--c------CCCcCC-----------
Confidence 99999998764 2221111111233 4777776 6888766778888876441 0 000000
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCc
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKAN 421 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 421 (486)
| ..+.+....+..+++..+-.+++.+.+++. + +.+.. +.+.-+. -..-++.+.+..+
T Consensus 255 ---T-~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~------l-~~l~~-~~v~~vR-G~Gl~~gve~~~~---------- 311 (364)
T PRK04013 255 ---T-FGGNPLACKAVAVTLRILRRERLVEKAGEK------F-IEIKG-ERVVTTR-GRGLMIGIVLKKP---------- 311 (364)
T ss_pred ---C-CCcCHHHHHHHHHHHHHHHhccHHHHHHHH------H-HHhcc-Ccceeee-eCcEEEEEEeCCc----------
Confidence 1 011112223334444445444443333321 2 22322 2211110 1123444444321
Q ss_pred cchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 422 EGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 422 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
...+.+.+.++|.+. .+ .+...+|+.. ....+++|++++++.|++++++++
T Consensus 312 ------~~~i~~~~~~~Gll~-~~---~g~~vlr~~P-pl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 312 ------VGKYVEELQNRGYLV-HT---AGQRVIRLLP-PLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred ------HHHHHHHHHhCCcEE-ee---CCCCEEEEeC-CcccCHHHHHHHHHHHHHHHHHHh
Confidence 235677777889753 32 2346799987 457789999999999999998765
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-10 Score=112.73 Aligned_cols=333 Identities=11% Similarity=0.042 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.|++++...-+ ..+|+++||+||..|+..||...... |..+ ++.+|......|-...-+..+
T Consensus 98 ~~~~~~lae~L~~~~p~~~~-------~v~f~~SGseAve~AlklAr~~~~~~-g~tg-r~~ii~~~~~YHG~t~~als~ 168 (460)
T PRK06916 98 NVPSILLAEKLIEVVPEGLK-------KVFYSDSGATAVEIAIKMAFQYWQNK-GKPK-KQRFVTLKNAYHGDTIGAVSV 168 (460)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEECCcCCcccHHhHhc
Confidence 34556677788887642212 57999999999999999999753221 2111 233444555566544444444
Q ss_pred cCCC---------CCCeEEEecCCCC--Cc--------ccCHHHHHHHHHHHHHCCCccEEEEeec-CCccccccCC---
Q 038818 192 AGID---------PKNFRAIKTTKSS--SF--------TLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAITTVDP--- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~--~~--------~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G~idp--- 248 (486)
.|-. ...+..+|....- .+ .-+++.+++.++. .+..+..|++.- .....|.+-|
T Consensus 169 s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~ 245 (460)
T PRK06916 169 GAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKG 245 (460)
T ss_pred cCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHH
Confidence 3321 0123444432100 00 1235667777752 223455677765 3555576633
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCcc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+++|.++|++||+.+++|+++.|+.....-+.....++ ..|.+++ -|.++..+ ++|.++.+++- . +.+.. .
T Consensus 246 fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv-~PDiv~~--gK~l~gG~~Pi~av~~~~ei-~-~~~~~--~ 318 (460)
T PRK06916 246 YLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENV-TPDIMTA--GKGLTGGYLPIAITVTTDEI-Y-NAFYG--D 318 (460)
T ss_pred HHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCC-CCCeeee--ehhhhcCccccceeeecHHH-H-HHhhc--c
Confidence 89999999999999999999876422221111111233 4787776 68777664 78888887652 2 22211 0
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--CeeEE
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFAVV 404 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~~v 404 (486)
+.... .. ....+....++.+.+++..+..-.-.++.++..++.++|.+.|+++....++... ...++
T Consensus 319 ~~~~~--------~~---~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~ 387 (460)
T PRK06916 319 YEEQK--------TF---FHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMV 387 (460)
T ss_pred ccccC--------cc---ccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCcee
Confidence 10000 00 0001111234444444443311111235677788888888888765222111111 12234
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+.+..+.. ..++ .........++...+.++|+++ .+. + ..+|+.. ....|++|||+++++|++.++++.
T Consensus 388 giel~~~~~-~~~~--~~~~~~~~~~i~~~~~~~Gvl~-~~~---g-~~l~~~P-pl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 388 GIELVKNKE-TKEP--FEWTERVGVQVCKRSRELGMLT-RPL---G-NTIVFMP-PLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred eEEeecccc-cccC--CCchhhHHHHHHHHHHHCCeEE-Eec---C-CEEEEeC-CcccCHHHHHHHHHHHHHHHHhhc
Confidence 444432110 0000 0000123456778888899754 321 2 4688876 467788999999999999998765
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-10 Score=124.49 Aligned_cols=317 Identities=9% Similarity=0.002 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+.|++++.-+.+ ..+|+++||+||..|+..||... | ++.+|......|-...-+....
T Consensus 624 ~~~~elae~L~~~~p~~~~-------~v~f~~SGsEA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~ga~~~s 688 (972)
T PRK06149 624 AAVAEFSERLAALAPDGLD-------TVFLVNSGSEANDLAIRLAWAAS-------G-RRDVVSVLEAYHGWTVATDAVS 688 (972)
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCCchHHHHHHHHHHHHhc-------C-CCeEEEEeCCCCCcChhHhhhc
Confidence 3445566777777631112 57999999999999999998752 1 3345555555663222221111
Q ss_pred C----------CCCCCeEEEecCCC--CCcc-cC-----HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----ch
Q 038818 193 G----------IDPKNFRAIKTTKS--SSFT-LT-----PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LG 250 (486)
Q Consensus 193 G----------~g~~~v~~v~~d~~--~~~~-~d-----~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~ 250 (486)
+ .....+..++.... ..+. .+ .+++++.++.....+..+.+|++.......|.+-| ++
T Consensus 689 ~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~ 768 (972)
T PRK06149 689 TSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQ 768 (972)
T ss_pred CCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHH
Confidence 1 00112344443210 0011 12 35666666654444556777888877777788888 99
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccc-hhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCccccc
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEF-RHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLR 329 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~-~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~ 329 (486)
+|.++|++||+.+++|+++.|+......+ .....++ ..|.+++ -|.++..++.|.++++++ . .+.+... .+++
T Consensus 769 ~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~PDivt~--gK~lg~G~Pl~av~~~~~-i-~~~~~~~-~~~~ 842 (972)
T PRK06149 769 QVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV-VPDIITM--AKGMGNGHPLGAVITRRE-I-AEALEAE-GYFF 842 (972)
T ss_pred HHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC-CCCEEEe--cccccCCeeeEEEEEcHH-H-HhhhccC-Cccc
Confidence 99999999999999999996543222111 1111234 5788866 788887677899988764 2 2233211 1111
Q ss_pred CccCCCCCccCCCCccccCCCCCCchHHHHHH---HHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCee
Q 038818 330 NKASDSKQVVDYKDWQITLSRRFRALKLWLVL---RSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFA 402 (486)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l---~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~ 402 (486)
. | .....+.+.+++ ..+-.+ ++.++..++.++|++.|+++ |-+..+.. ...
T Consensus 843 s--------------T----~~gnP~~~aaala~L~~i~~e---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG-~Gl 900 (972)
T PRK06149 843 S--------------S----TGGSPVSCRIGMAVLDVLREE---KLQENARRVGDHLKARLEALADRHPLIGAVHG-MGL 900 (972)
T ss_pred C--------------C----CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEee-cce
Confidence 1 1 112334444444 333333 35566777777787777653 32211111 123
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++.+.+..... ..+...+....+.+.+.++|+++ .+.. ....++|+.. ....|++|||.++++|++++.+
T Consensus 901 ~~gvel~~~~~------~~~~~~~~~~~i~~~l~~~Gvl~-~~~g-~~~~vl~~~P-pl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 901 YLGVELVRDRQ------TLEPATEETAAICDRLLELGVIM-QPTG-DHLNILKIKP-PLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred EEEEEEecCcc------cCCCChHHHHHHHHHHHhCCeEE-eecC-CCCCEEEEEC-CCcCCHHHHHHHHHHHHHHHHh
Confidence 34444432110 00011234567888888899753 3321 1135788876 3467889999999999998864
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=111.47 Aligned_cols=287 Identities=11% Similarity=0.047 Sum_probs=158.3
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHH-cc-------c----------cCCCC-eEEEecCCCchHHHHHHHHcCCC----
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNE-IG-------R----------ENISR-LVVYGSDQTHSALQKAAQIAGID---- 195 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~-~~-------~----------~~~~~-~~v~~s~~~H~s~~~a~~~~G~g---- 195 (486)
..+|++||||||..|+..||.+.... ++ . .|.++ .+|......|-...-+....|-.
T Consensus 124 ~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~ 203 (464)
T TIGR00699 124 QVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHK 203 (464)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 57999999999999999998753211 00 0 11112 34445555665544444444321
Q ss_pred ----CCCeEEEecCCCC-C-----------cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHH
Q 038818 196 ----PKNFRAIKTTKSS-S-----------FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDI 255 (486)
Q Consensus 196 ----~~~v~~v~~d~~~-~-----------~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i 255 (486)
...+..+|..... . ..-+++.|+++|++. +..+..|++.......|.+-| +++|.++
T Consensus 204 ~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~l 280 (464)
T TIGR00699 204 LDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDI 280 (464)
T ss_pred cCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHH
Confidence 0112233322100 0 011456677777532 233567788777777788887 9999999
Q ss_pred HHHhCceEEeeccccchhccCccchhhhcCCC-CCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCC
Q 038818 256 AKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD 334 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~ 334 (486)
|++||+.|++|+++.|+.....-+.....++. ..|.+++ .|.+++ .|+++.+ + .+.....+..
T Consensus 281 c~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg~---gG~~~~~-~-----~~~~~~~~~~----- 344 (464)
T TIGR00699 281 TKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQT---AGYFFHD-P-----AFRPNKPYRQ----- 344 (464)
T ss_pred HHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEe--hhhhcc---CCccccc-h-----hccCCCCccc-----
Confidence 99999999999998765321111111122443 5888776 577631 2332222 1 1110000000
Q ss_pred CCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCC-eEEec-CCCeeEEE
Q 038818 335 SKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNR-FEIVA-PRNFAVVC 405 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~-~~~~~-~~~~~~v~ 405 (486)
..+-...++++.+ ++..+-.+ +..++..++.++|++.|++ +|. +.-+. .....++.
T Consensus 345 ------------~~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~g 409 (464)
T TIGR00699 345 ------------FNTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIA 409 (464)
T ss_pred ------------ccCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEE
Confidence 0011123333333 34444323 3455666666777777654 331 22121 13455666
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+.+.. .....++.+.+.++|.+. ... +...+|+.. ....+++|||.++++|.++
T Consensus 410 ie~~~--------------~~~~~~i~~~~~~~Gvl~-~~~---g~~~ir~~P-pl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 410 WDTPD--------------EAKRDKLLKKARNNGVNI-GGC---GVKAIRLRP-MLVFQKHHADIFLEIISKI 463 (464)
T ss_pred EecCC--------------HHHHHHHHHHHHHCCcEE-ecC---CCCeEEEeC-CCCCCHHHHHHHHHHHHHh
Confidence 65532 233567888888899754 322 446799987 4678889999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-09 Score=101.78 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=124.9
Q ss_pred hcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE
Q 038818 97 GFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY 176 (486)
Q Consensus 97 ~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~ 176 (486)
......+.|+.|.+..-+.+.+.+++.+.=|.|.+ ..++++|+|+|.|....|...... +++=|+
T Consensus 101 ~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~-----p~dI~LT~GAS~ai~~il~l~~~~----------~~~Gvl 165 (475)
T KOG0258|consen 101 DCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPAD-----PEDIFLTTGASPAIRSILSLLIAG----------KKTGVL 165 (475)
T ss_pred hcCCcccccccccCChhHHHHHHHHHHhccCCCCC-----HHHeeecCCCcHHHHHHHHHHhcC----------CCCceE
Confidence 33336678999999999999999999999886544 247999999999987777766543 344455
Q ss_pred ecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHH
Q 038818 177 GSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLC 253 (486)
Q Consensus 177 ~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~ 253 (486)
++-.-++-....+..+|. ..+..-.|+..+|.+|.++|++.+++.. ++..|.++++..+.|+||.+ +.+++|.
T Consensus 166 iPiPQYPLYsAti~l~~~---~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~ 241 (475)
T KOG0258|consen 166 IPIPQYPLYSATISLLGG---TQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGII 241 (475)
T ss_pred eecCCCchhHHHHHHhCC---cccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHH
Confidence 554444444455677777 6677778887889999999999999988 78889888999999999987 6799999
Q ss_pred HHHHHhCceEEeeccccc
Q 038818 254 DIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~ 271 (486)
.+|+++|+.|..|..|--
T Consensus 242 ~fa~~~~l~llaDEVYQ~ 259 (475)
T KOG0258|consen 242 CFAAEEGLVLLADEVYQD 259 (475)
T ss_pred HHHHHcCeEEechHHHHh
Confidence 999999999999998743
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-10 Score=113.27 Aligned_cols=311 Identities=16% Similarity=0.088 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.++++++++ ...|+++||||+..|+..||... | +..+|......|-..+.....
T Consensus 114 ~~~~~~lAe~l~~~~~~~---------~v~F~nSGtEA~e~AlrlAR~~T-------G-r~~ii~~~g~YHG~~d~~l~~ 176 (453)
T PRK07046 114 SEDAAWVGEELARRFGLP---------YWQVATTATDANRFVLRWARAVT-------G-RPKILVFNGCYHGTVDDVFVD 176 (453)
T ss_pred CHHHHHHHHHHHHHhCCC---------EEEEECCHHHHHHHHHHHHHHhh-------C-CCEEEEECCCCCCCcHHhHhh
Confidence 566777888898888532 57999999999999999999863 1 223333444455432222111
Q ss_pred c------------CCCC---CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHH
Q 038818 192 A------------GIDP---KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPL 252 (486)
Q Consensus 192 ~------------G~g~---~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I 252 (486)
. |+.. ..+..+|. -|++.|++.+.. ....+|++.-.....|.+-| ++++
T Consensus 177 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------nd~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~l 244 (453)
T PRK07046 177 LVDGRPVQRPGLLGQVHDLTATTRVVEF-------NDLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEAL 244 (453)
T ss_pred ccCCCCCCCCCCCCCCccccCceEeeCC-------CCHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHH
Confidence 1 1100 01222221 278999988842 22456777766666677755 7999
Q ss_pred HHHHHHhCceEEeecccc---chhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCC-cccc
Q 038818 253 CDIAKRYSIWVHVDAAYA---GSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTN-PEFL 328 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g---~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~-~~y~ 328 (486)
.++|++||+.+++|+++. |... ... .-++ ..|.+++ -|.+++.+++|.+..+++ .. +.+... ....
T Consensus 245 r~lc~~~g~llI~DEV~tfr~g~Gg----~~~-~~gv-~PDi~t~--gK~lggG~Pi~av~g~~~-i~-~~~~~~~~~~~ 314 (453)
T PRK07046 245 RELTRRYGTLLVIDETHTISSGPGG----YTR-AHGL-EPDFLVV--GKPIAGGVPCAVYGFSAE-LA-ERAQAAKASAP 314 (453)
T ss_pred HHHHHHhCCEEEEEccccCccCCcc----hhH-HhCC-Cccceee--hhhhcCCCcceeeeehHH-HH-HHHhhccccCC
Confidence 999999999999999984 2111 111 1134 4788775 799887788998888755 22 222210 0000
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCC-eEEecCCCeeE
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNR-FEIVAPRNFAV 403 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~-~~~~~~~~~~~ 403 (486)
. .......+-....+.+.+++..+..-.-++..++..++.++|++.|++ .+- ..+.+.. .+
T Consensus 315 ~------------~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G--~~ 380 (453)
T PRK07046 315 P------------GHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVG--AR 380 (453)
T ss_pred C------------CCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--cE
Confidence 0 000111122234444444444331111123455666667777666653 321 2222222 23
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.+.+.+...+................+...+.++|+++ .+. ...++++. ..+++|||+++++++++++++.
T Consensus 381 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~-~~~----~~~~~~~p---~~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 381 VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLI-TPF----HNMMLVCP---ATTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEE-ecc----cCcEEEeC---CCCHHHHHHHHHHHHHHHHHHh
Confidence 444443211000000000001234566777888899753 321 13456654 4688899999999999998875
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-09 Score=109.00 Aligned_cols=327 Identities=14% Similarity=0.060 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
+..+.++.+.|.+++...... ....+++++||||+..|+..||... | +..+|......|-...-+...
T Consensus 100 ~~~~~~lAe~L~~~~p~~~~~----~~~~f~~~SGsEAve~AlklAr~~t-------g-r~~Ii~~~~~yHG~t~~als~ 167 (459)
T PRK06931 100 TPLKDAFSEYLLSLLPGQGKE----YCLQFTGPSGADAVEAAIKLAKTYT-------G-RSNVISFSGGYHGMTHGALAV 167 (459)
T ss_pred CHHHHHHHHHHHHhCCCcccc----ceEEEeCCCcHHHHHHHHHHHHHhc-------C-CCeEEEECCCcCCccHHHHhh
Confidence 455666778888877422110 0023556899999999999999752 1 223333444455443333333
Q ss_pred cCCC---------CCCeEEEecCCCCCc------ccCHHHHHHHHHHHHH----CCCccEEEEeecCCccccccCC----
Q 038818 192 AGID---------PKNFRAIKTTKSSSF------TLTPESLQAAIDLDIQ----AGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~------~~d~~~L~~~l~~~~~----~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.|-. ...+..+|....-.. .-+.+++++.+++... .+..+..|++.-.....|.+-|
T Consensus 168 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~y 247 (459)
T PRK06931 168 TGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEW 247 (459)
T ss_pred cCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHH
Confidence 3210 113445554310000 1134555444443322 1233566777666666676644
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
++++.++|++||+.+++|+.+.|+.....-+.....++ ..|.+++ -|.++..++.|.+..++. + +.+. +...
T Consensus 248 l~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv-~PDivt~--gK~l~gG~Pi~av~~~~~--~-~~~~--~~~~ 319 (459)
T PRK06931 248 LQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI-EPDIIVM--SKAVGGGLPLAVLGIKKE--F-DAWQ--PGGH 319 (459)
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC-CCCEEEe--cccccCCcceeeeeeHHH--H-hhcc--CCCC
Confidence 89999999999999999999877532221111111233 5788877 688887688888777643 2 2221 1100
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHH---HHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCe
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVL---RSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNF 401 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l---~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~ 401 (486)
..+-...++++.+++ ..+..+ +..++..++.++|.+.|++ +|.+.-+ .-..
T Consensus 320 ------------------~~T~~gnpla~aaala~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v-rG~G 377 (459)
T PRK06931 320 ------------------TGTFRGNQLAMATGLTTLKILKEE---NLAQNAAERGEWLKAQLAELQKRYPCIGNV-RGRG 377 (459)
T ss_pred ------------------CCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEeE-ecCc
Confidence 011122344444444 333333 3456666666777666654 3321111 1123
Q ss_pred eEEEEEeecCCC-CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSAS-GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 402 ~~v~f~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.++.+.+..... +..... .........++...+.++|.++ .+.. .....+|+.. ....|++|||++++++++++.
T Consensus 378 lm~giel~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Gvl~-~~~~-~~~~~l~~~P-pl~it~~eid~~~~~l~~~l~ 453 (459)
T PRK06931 378 LMIGIEIVDERQPADAMGS-YPADGELAAAIQKACFENGLLL-ERGG-RNGNVVRLLP-PLLITQAECEEFIDRFEQALL 453 (459)
T ss_pred eEEEEEEccCccccccccc-CCccHHHHHHHHHHHHHCCcEE-eecC-CCCCEEEEEC-CCCcCHHHHHHHHHHHHHHHH
Confidence 345555532210 000000 0001234567788888899754 3221 1235799887 467789999999999999998
Q ss_pred HHhh
Q 038818 481 GILA 484 (486)
Q Consensus 481 ~l~~ 484 (486)
++++
T Consensus 454 ~~~~ 457 (459)
T PRK06931 454 AAVK 457 (459)
T ss_pred HHHh
Confidence 8764
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.1e-10 Score=104.28 Aligned_cols=329 Identities=12% Similarity=0.074 Sum_probs=195.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE---ecCCCc
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTLAAARDQILNEIGRENISRLVVY---GSDQTH 182 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~---~s~~~H 182 (486)
......++|.-+.+.--+.||++++- ++..+ .-+||-||+....+... |..+|. .+.-.|
T Consensus 80 Gne~ID~iE~LCq~RALeaF~ldp~k-----WGVNVQp~SGSPANfavYtall~-----------Ph~RiMGLDLP~GGH 143 (477)
T KOG2467|consen 80 GNEYIDQIELLCQKRALEAFGLDPEK-----WGVNVQPYSGSPANFAVYTALLK-----------PHERIMGLDLPSGGH 143 (477)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCHHH-----CceeeccCCCCchhhHHHhhhcC-----------CCCeeeeccCCCCCc
Confidence 34456789998889999999998752 13333 45788899765554433 333343 233445
Q ss_pred hHHHH---HHHHcCCCC-CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH
Q 038818 183 SALQK---AAQIAGIDP-KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR 258 (486)
Q Consensus 183 ~s~~~---a~~~~G~g~-~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~ 258 (486)
-|..- .-++..... -+-....+|+ .+|-+|.|.||+.-..- +|.++| +|++..-..-|.+.+.+||.+
T Consensus 144 LsHGy~T~~kkISa~SiyFeSmPYkv~~-~TG~IDYD~Le~~A~~f-----rPk~ii--aG~SaY~R~~DYaR~R~Iad~ 215 (477)
T KOG2467|consen 144 LSHGYQTPTKKISATSIYFESMPYKVDP-STGYIDYDKLEKTATLF-----RPKLII--AGTSAYSRLIDYARFRKIADK 215 (477)
T ss_pred cccccccCCceeeeeeeecccCceeeCC-CCCceehHHHHHHHHhc-----CCcEEE--eccccchhhccHHHHHHHHHh
Confidence 44211 001111100 0111234554 36899999999865443 465544 355556677889999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHh-cCCcccccCccCCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKAL-STNPEFLRNKASDSKQ 337 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~ 337 (486)
.|++|.+|-||-.+.........- .+.+|.++...||.+-+|.| |++++|+.-...+.- ...-.| +...
T Consensus 216 ~gA~Lm~DMAHISgLVAA~vipsP---Fey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~~k~g~~i~y------dlE~ 285 (477)
T KOG2467|consen 216 VGAYLMADMAHISGLVAAGVIPSP---FEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIKPKQGKEILY------DLED 285 (477)
T ss_pred cCceeehhhhhHHHHHhcccCCCc---ccccceeeccccccccCCcc-eeEEEeccCCcCCCCCCCccee------chhh
Confidence 999999999985554332221111 35899999999999999985 556665431100000 000011 1112
Q ss_pred ccCCC-CccccCCCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCC
Q 038818 338 VVDYK-DWQITLSRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASG 414 (486)
Q Consensus 338 ~~~~~-~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~ 414 (486)
..++. -.++|++-.-. ..++..+|+......+.+..++..++++.|.+.|.+. |++++.. .+.+++.+.+.+.+.
T Consensus 286 kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~- 363 (477)
T KOG2467|consen 286 KINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGV- 363 (477)
T ss_pred hhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccCC-
Confidence 22221 12445554433 3566778888888889999999999999999999987 8998764 455777777776542
Q ss_pred CCCCCCccchHHHHHHHHHHHHh--cCcEEEeeeeECCEeEEEEEe---cCCCCcHHHHHHHHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINA--SGQLYVSHGMVAGIYFIRFAV---GATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~~~~~~~~~~~lR~~~---~~~~tt~~did~~i~~l~~~~~ 480 (486)
+ +...+++++.+.- +...+.+....-..+.+|+.. +.....|+|.+++.+-|.+.++
T Consensus 364 --d-------GarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 364 --D-------GARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred --c-------hHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 1 3334555554311 111111111111234578764 3445567899999988887654
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-09 Score=108.60 Aligned_cols=320 Identities=13% Similarity=0.029 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
...+.++.+.|.+++.-... ...+|+++||||+..|+..||... + +..+|......|-...-+...
T Consensus 96 ~~~~~~la~~L~~~~p~~~~------~~v~f~~sGseA~e~AlklAr~~t-------g-r~~ii~~~~~yHG~t~~~ls~ 161 (451)
T PRK06918 96 YEPYIELAEKLAALAPGSFD------KKVLFLNSGAEAVENAVKIARKYT-------K-RQGIISFSRGFHGRTLMTMTM 161 (451)
T ss_pred cHHHHHHHHHHHHhCCCCCC------CEEEEcCCcHHHHHHHHHHHHHHh-------C-CCcEEEECCCcCccchhhhhh
Confidence 34556677788888742210 157999999999999999998762 1 223444444455443333333
Q ss_pred cCC--------C--CCCeEEEecCCC--CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---
Q 038818 192 AGI--------D--PKNFRAIKTTKS--SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP--- 248 (486)
Q Consensus 192 ~G~--------g--~~~v~~v~~d~~--~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp--- 248 (486)
.|- + ...+..+|.... ....+. .+.+++.+.... .+..+.+|++.-.....|.+-|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~EPi~g~gG~~~~~~~ 240 (451)
T PRK06918 162 TSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEV-APETIAAVVMEPVQGEGGFIVPSKK 240 (451)
T ss_pred cCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhc-CCCceEEEEECcccCCCCCccCCHH
Confidence 221 0 112344443210 000111 223444332111 2234556666655555566433
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCccc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|.++|++||++++.|+.+.++......+....-++ ..|.+ +..|.++..+.+|.++.+++ .. +.+.. .
T Consensus 241 ~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v-~pDi~--t~sK~l~~G~pig~v~~~~~-i~-~~~~~---~ 312 (451)
T PRK06918 241 FVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV-VPDLI--TVSKSLGAGVPISGVIGRKE-IM-DESAP---G 312 (451)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCC-CCCEE--eeehhhcCCCccEEEEEcHH-HH-hccCC---C
Confidence 88999999999999999999977543221111000122 35644 46899987788999887643 22 22210 0
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCC
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRN 400 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~ 400 (486)
.. ..+-....+.+.+ ++..+..+. ..++..++.+++.+.|++ .+.+.-+. ..
T Consensus 313 ~~-----------------~~T~~g~~l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~l~~~~~~~~~vr-g~ 371 (451)
T PRK06918 313 EL-----------------GGTYAGSPLGCAAALAVLDIIEKEN---LNDRAIELGKVVMNRFEEMKNKYNCIGDVR-GL 371 (451)
T ss_pred Cc-----------------CcCCCcCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhhCCCceeec-cc
Confidence 00 0011123344444 344332233 334445555666665544 33222222 23
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
..++.+.+..+.. ..........++.+.+.++|+++.....+ ..++|+++. ...++++||++++.|+++++
T Consensus 372 G~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~--~~~lrl~p~-l~~t~~~id~~l~~l~~~l~ 442 (451)
T PRK06918 372 GAMCAFELVQDRK------TKEPDKTLTANICKEANKRGLLLLSAGTY--GNVIRVLMP-LVITDEQLEEGLTIIEESLQ 442 (451)
T ss_pred eeEEEEEEccCCC------cCCCcHHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECC-CccCHHHHHHHHHHHHHHHH
Confidence 4455554431100 00001345567888888899865433222 257999873 34678899999999999998
Q ss_pred HHhh
Q 038818 481 GILA 484 (486)
Q Consensus 481 ~l~~ 484 (486)
++..
T Consensus 443 ~~~~ 446 (451)
T PRK06918 443 ACYE 446 (451)
T ss_pred HHHH
Confidence 7753
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-09 Score=108.78 Aligned_cols=313 Identities=12% Similarity=0.062 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC----CCeEEEecCCCchHHHHHH
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI----SRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~----~~~~v~~s~~~H~s~~~a~ 189 (486)
...++.+.++++.+ +... ...+|++||||||..|+..||.+........|. +..+|......|-...-+.
T Consensus 93 ~~~~la~~l~~~~~-p~~~-----~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~al 166 (443)
T PRK08297 93 EMARFVDTFARVLG-DPEL-----PHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTL 166 (443)
T ss_pred HHHHHHHHHHhhcC-CCCC-----CEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhh
Confidence 33445566666653 2211 268999999999999999998763211000111 2334445555564433344
Q ss_pred HHcCCCCC--------CeEEEecCC------CCC-------cccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc--
Q 038818 190 QIAGIDPK--------NFRAIKTTK------SSS-------FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-- 246 (486)
Q Consensus 190 ~~~G~g~~--------~v~~v~~d~------~~~-------~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-- 246 (486)
...|.... ....+|... ..+ ..-+++++++.+.. .+..+..|++.-.....|.+
T Consensus 167 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~p 243 (443)
T PRK08297 167 SLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHF 243 (443)
T ss_pred hhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCC
Confidence 33331000 000111110 000 00134555666653 23446778887766667776
Q ss_pred --CCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch-HHH-HHhc
Q 038818 247 --DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN-ALI-KALS 322 (486)
Q Consensus 247 --dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~-~~~-~~~~ 322 (486)
+.+++|.++|++||+++++|+++.|+.....-+.....++ ..|.+++ .|.+ | .|.++++++- ... ..+.
T Consensus 244 p~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l--~--~~a~l~~~~i~~~~~~~~~ 316 (443)
T PRK08297 244 RPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-RPDIVAF--GKKT--Q--VCGIMAGRRVDEVEDNVFA 316 (443)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCC-CCCEEEe--cccc--c--ccceecchHHHHhhhhhcc
Confidence 4599999999999999999999976532111111111133 5788875 6765 3 3444444331 110 0110
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCe--EEe
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRF--EIV 396 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~--~~~ 396 (486)
. ..+. ..+-....+.+.+++..+..-.-.+..++..++.++|.+.|++ .|.+ .+-
T Consensus 317 ~-~~~~------------------~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vr 377 (443)
T PRK08297 317 V-SSRI------------------NSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVR 377 (443)
T ss_pred C-cccc------------------CCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeee
Confidence 0 0000 0111123344434443332111124566677777777777754 3322 222
Q ss_pred cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 397 APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 397 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
....++.+.+.. ......+.+.+.++|+++. +. +...+|++. ....|++|||++++.|.
T Consensus 378 --g~G~~~~i~~~~--------------~~~~~~~~~~l~~~Gvl~~-~~---~~~~lr~~P-~l~~t~~eid~~l~~l~ 436 (443)
T PRK08297 378 --GRGLMCAFDLPT--------------TADRDEVIRRLWEEGVLVL-PC---GERSIRFRP-ALTVTTEEIDAAIDALR 436 (443)
T ss_pred --ccceEEEEEecC--------------HHHHHHHHHHHHHCCEEEe-cC---CCCeEEEEC-CccCCHHHHHHHHHHHH
Confidence 234566666642 2334567788888897543 21 235689976 35678889999999999
Q ss_pred HHHHHH
Q 038818 477 EKLDGI 482 (486)
Q Consensus 477 ~~~~~l 482 (486)
++++++
T Consensus 437 ~~l~~~ 442 (443)
T PRK08297 437 RALPEV 442 (443)
T ss_pred HHHHhh
Confidence 988765
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-09 Score=109.64 Aligned_cols=309 Identities=9% Similarity=-0.010 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+.|+++.+.+-+ ..+|+++||+|+..|+..||...... +..+ +..+|......|-...-+....
T Consensus 83 ~~~~~lae~L~~~~p~~~~-------~v~f~~SGseA~e~AlklAr~~~~~~-g~~~-r~~ii~~~~~yHG~t~~als~~ 153 (422)
T PRK05630 83 EPAIKLTRKLLNLTDNGLD-------HVFYSDSGSVSVEVAIKMALQYSKGQ-GHPE-RTRLLTWRSGYHGDTFAAMSVC 153 (422)
T ss_pred HHHHHHHHHHHhhCCCCcC-------EEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEECCCcCCccHHHhccC
Confidence 3445566777777642212 57999999999999999999764221 2111 2234445555564333333332
Q ss_pred CC--------C--CCCeEEEecCCCCCcccC-------HHHHHHHHHHHHHCCCccEEEEeecC-Ccccccc----CCch
Q 038818 193 GI--------D--PKNFRAIKTTKSSSFTLT-------PESLQAAIDLDIQAGLIPLFLCATVG-TTAITTV----DPLG 250 (486)
Q Consensus 193 G~--------g--~~~v~~v~~d~~~~~~~d-------~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~G~i----dpl~ 250 (486)
+- + ...+..+|.... ...+ .+.+++.+.+ ....|++.-. ....|.+ +.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~~~~~~~l~ 225 (422)
T PRK05630 154 DPEGGMHSLWKGTLPEQIFAPAPPV--RGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMRFHDVALIE 225 (422)
T ss_pred CCcccccccccccCCCCeEcCCCcc--cCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcccCCHHHHH
Confidence 21 0 012344443310 0112 2334444432 2345666542 4444554 4589
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCC-c--c
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTN-P--E 326 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~-~--~ 326 (486)
+|.++|++||+.+++|+++.|+.....-+.....++ ..|.+++ -|.+++.+ +.|.++++++- .+.+... . .
T Consensus 226 ~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDi~t~--gK~l~gG~~p~~av~~~~~i--~~~~~~~~~~~~ 300 (422)
T PRK05630 226 GVRTLCDKHDILLIADEIATGFGRTGELFATLAAGV-TPDIMCV--GKALTGGFMSFAATLCTDKV--AQLISTPNGGGA 300 (422)
T ss_pred HHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCC-CCCeeee--echhhcCccccceeeccHHH--HHHHhccCCCCc
Confidence 999999999999999999866422111111111133 4677755 79886543 56777776542 2233210 0 0
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCeeEE
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFAVV 404 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v 404 (486)
+... .|+ .+.+....+...+++.+-.+ +..++..++.++|++.|+++.....+.+ -...++
T Consensus 301 ~~h~-------------~T~-~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~ 363 (422)
T PRK05630 301 LMHG-------------PTF-MANPLACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIG 363 (422)
T ss_pred cccC-------------CCC-cCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEE
Confidence 0000 011 01111222333344444333 3456777778888877764321111111 123455
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+.+..+. ...++.+.+.++|.++ .+. + ..+|+.. ....|++|||++++.|+++++
T Consensus 364 ~ie~~~~~--------------~~~~~~~~~~~~Gl~~-~~~---g-~~l~~~P-pL~it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 364 VVEMEQPV--------------DMEEATQAAVDHGVWL-RPF---G-RLVYVMP-PYITTSEQIAQICAALAAAVK 419 (422)
T ss_pred EEEECCcc--------------cHHHHHHHHHHCCeEE-Eec---C-CEEEEEC-CccCCHHHHHHHHHHHHHHHh
Confidence 55554221 1246677788889753 321 2 5789876 467889999999999998875
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=110.43 Aligned_cols=306 Identities=11% Similarity=0.086 Sum_probs=186.7
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
.+.+.+++.+|.+++ ++.+-|-.++..++-+... .+++|++.+..+..+.++.+..--
T Consensus 143 dlE~~iakF~G~E~a---------ivYs~gF~ti~S~ipafsK-----------rGDIi~~de~~nfaIq~GlqlSRS-- 200 (467)
T KOG1358|consen 143 DLEKRIAKFMGTEDA---------IVYSYGFSTIESAIPAFSK-----------RGDIIFVDEAVNFAIQKGLQLSRS-- 200 (467)
T ss_pred ccHHHHHHhhCCcce---------eeeccccchhhhcchhhhc-----------cCcEEEEehhhhHHHHHHHhhhhh--
Confidence 334568999998865 3444333333333333222 688999999999999999877655
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHH----HCCC---ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDI----QAGL---IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~----~~g~---~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
.++++. +.|+++||+.+.+.+ ++.. .-.++++..-.-++|.+.|+.+|.++..||...+++|..+
T Consensus 201 -~i~~Fk-------hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~ 272 (467)
T KOG1358|consen 201 -TISYFK-------HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESL 272 (467)
T ss_pred -eeEEec-------CCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEeccc
Confidence 777775 448889988875543 1111 1347888888999999999999999999999999999998
Q ss_pred cchhccCccchh----hhcCCCCCCceeeccccccCCCCcceEEEeeCchHH-HHHhcCCcccccCccCCCCCccCCCCc
Q 038818 270 AGSACICPEFRH----FIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNAL-IKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 270 g~~~~~~~~~~~----~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
..+.+..- .+. .-..+..+|.++.+.--.+.. .|.+.+.+.-.. .+.+ ...+|.+....
T Consensus 273 SfG~lg~~-GrGvteH~~v~~~~iDiv~~sm~~alas---~GgFc~G~~~i~~hQrL-Sg~~Y~fSAsl----------- 336 (467)
T KOG1358|consen 273 SFGVLGKT-GRGVTEHFGVPITDIDIVTASMETALAS---GGGFCAGKSFIADHQRL-SGSGYCFSASL----------- 336 (467)
T ss_pred cccccccc-CccccccCCCCccceeeeeecccccccc---cCceeecceeeEeeeec-cccceeeeccC-----------
Confidence 66554321 111 111245788888876544432 233333221110 0000 01123322100
Q ss_pred cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccch
Q 038818 345 QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGA 424 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~ 424 (486)
-+..+-++..++..+ +.-.++.+........+.+.|+...++++.+.+.++++-.++.+.... .++-
T Consensus 337 -----Pp~la~aa~~ai~i~--~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s------~e~e 403 (467)
T KOG1358|consen 337 -----PPYLAGAAIKAILIE--EWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGS------REKE 403 (467)
T ss_pred -----chhhhhhHHHHHHHH--hhCcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccc------hHHH
Confidence 001112222233322 233345566667777888888888789999999999998888764311 1111
Q ss_pred HHHHHHHHHHHHhcCcEEEeeeeEC------CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 425 NELNRKLLESINASGQLYVSHGMVA------GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 425 ~~~~~~l~~~l~~~g~~~~~~~~~~------~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
-.+-+.+.++....+........+. -...+|+|+ +...++++|+++.+.|++....+
T Consensus 404 ~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~-~a~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 404 EKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICV-SAGMSEEELERAAELIKEVASAV 466 (467)
T ss_pred HHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEE-eCCCCHHHHHHHHHHHHHHHHhh
Confidence 2344556666665666433322221 145799999 46778889999999999987654
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-09 Score=104.48 Aligned_cols=291 Identities=11% Similarity=0.004 Sum_probs=148.6
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCC----CCeEEEecCCCchHHHHHHHHcCCC-CCC----e---EEE----
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENI----SRLVVYGSDQTHSALQKAAQIAGID-PKN----F---RAI---- 202 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~----~~~~v~~s~~~H~s~~~a~~~~G~g-~~~----v---~~v---- 202 (486)
..+|+++|||||..|+..||....+.....|. +..+|......|-...-+....|.. ... . ..+
T Consensus 105 ~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~ 184 (431)
T TIGR03251 105 HLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPK 184 (431)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCc
Confidence 57899999999999999998753110000111 1234445555564444344333321 000 0 001
Q ss_pred ---ecCCCC-C-----cccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc----CCchHHHHHHHHhCceEEeeccc
Q 038818 203 ---KTTKSS-S-----FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV----DPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 203 ---~~d~~~-~-----~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i----dpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
|.+... . ..-+++++++.++. .+..+..|++.......|.+ +.+++|.++|++||+.|++|+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 261 (431)
T TIGR03251 185 LTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQ 261 (431)
T ss_pred ccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch
Confidence 111000 0 00123444555542 23456778888777777776 35999999999999999999999
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch-HHHH-HhcCCcccccCccCCCCCccCCCCcccc
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN-ALIK-ALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~-~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
.|+.....-+.....++ ..|.+++ -|.+ | .+|++ .+++- .... .+. .+... ..|+
T Consensus 262 tG~GrtG~~~a~~~~gv-~PDi~~~--gK~~--~-~~g~~-~~~~i~~~~~~~~~-~~~~~--------------~~T~- 318 (431)
T TIGR03251 262 TGVGLTGTAWAYQQLGV-QPDIVAF--GKKT--Q-VCGIM-AGRRVDEVADNVFA-VPSRL--------------NSTW- 318 (431)
T ss_pred hccCccchHHHHHhcCC-CCCEEEe--cccC--c-cceEE-ecchHHHhhhhccc-Ccccc--------------CCCC-
Confidence 86532111111111233 5788876 4543 2 23444 44331 1110 010 00000 0011
Q ss_pred CCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEEeecCCCCCCCCCCccc
Q 038818 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEG 423 (486)
Q Consensus 348 ~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~ 423 (486)
++.+....+..+++..+..++ ..++..++.++|.+.|++ .+++..-......++.+.+.+
T Consensus 319 ~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~------------- 382 (431)
T TIGR03251 319 GGNLVDMVRATRILEIIEEER---LVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS------------- 382 (431)
T ss_pred CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC-------------
Confidence 111111222333444443333 334555556666655543 332321111223455666532
Q ss_pred hHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 424 ANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 424 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
.....++.+.+.++|+++ .+. +...+|++. ....+++|||+++++|++
T Consensus 383 -~~~~~~~~~~l~~~Gvl~-~~~---g~~~lr~~P-~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 383 -TADRDEVIRQLYREGVLL-LGC---GERSIRFRP-PLTVTREEIDAAIDAIRR 430 (431)
T ss_pred -HHHHHHHHHHHHhCCeEE-ecC---CCCeEEEEC-CccCCHHHHHHHHHHHHh
Confidence 223456788888889754 221 235689987 567888999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-09 Score=105.48 Aligned_cols=297 Identities=11% Similarity=0.027 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEec-CCCchHHHHH--
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGS-DQTHSALQKA-- 188 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s-~~~H~s~~~a-- 188 (486)
...+.++.+.|.+++... + ...|+++||+|+..|+.+||... ++..|+.. ...+.+....
T Consensus 87 ~~~~~~la~~l~~~~p~~-~-------~v~f~~sGseA~e~AlklAr~~t---------gr~~i~~~~~~~~h~~~~~~~ 149 (431)
T PRK06209 87 SAIELDAAESFLELIDGA-D-------MVKFCKNGSDATSAAVRLARAYT---------GRDLVARCADHPFFSTDDWFI 149 (431)
T ss_pred CHHHHHHHHHHHHhCCcc-c-------eEEEecCHHHHHHHHHHHHHHHh---------CCCeEEEeccCcccccccccc
Confidence 344555667888876321 1 57899999999999999999762 23333322 1221111110
Q ss_pred -HHH--cCCCCC---CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 189 -AQI--AGIDPK---NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 189 -~~~--~G~g~~---~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
... .|.... .+..++ .-|+++|+++|+.. +..+.+|++.......+..+++++|.++|++||+.
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~---~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~l 219 (431)
T PRK06209 150 GTTPMSAGIPASVSALTVTFR-------YNDIASLEALFEDH---PGRIACVILEPATADEPQDGFLHEVRRLCHENGAL 219 (431)
T ss_pred ccCCCCCCCChhHhccccccC-------CCCHHHHHHHHHhC---CCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCE
Confidence 000 011000 011111 23899999998642 12344566654443334445599999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-----CcccccCccCCCCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-----NPEFLRNKASDSKQ 337 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-----~~~y~~~~~~~~~~ 337 (486)
+++|+++.|+... .......-++ ..|.+++ .|.++..++.|.+..+++ .. +.+.. ...++.
T Consensus 220 LI~DEv~tG~~~~-~~g~~~~~gv-~PDi~t~--gK~lggG~p~~av~~~~~-i~-~~~~~~~~~~~~~~~~-------- 285 (431)
T PRK06209 220 FILDEMITGFRWH-MRGAQKLYGI-VPDLSCF--GKALGNGFAVSALAGKRE-YM-ELGGLEHTDRERVFLL-------- 285 (431)
T ss_pred EEEEcccccCCcC-cchhhHHhCC-Ccceeee--hhhhcCCcccEEEEEHHH-HH-hhhcccccCCCCceee--------
Confidence 9999998664321 1001111133 4676554 798887667888887643 22 22100 000111
Q ss_pred ccCCCCccccCCCCCCc---hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeE--EecCCCeeEEEEEe
Q 038818 338 VVDYKDWQITLSRRFRA---LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFE--IVAPRNFAVVCFRV 408 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~---l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~--~~~~~~~~~v~f~~ 408 (486)
..+..... .++.+++..+-.++ ..++..++.++|++.|++ ++ +. +........+.+..
T Consensus 286 ---------~~T~~~np~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~~~~~~~-~~~~vr~~G~~~~~~~~~ 352 (431)
T PRK06209 286 ---------STTHGAETHALAAAIATMAIYRDED---VIERLHEQGAKLAAGVNEAAAEHG-LQDHVRVSGRPCCLTYST 352 (431)
T ss_pred ---------ccCCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEeecceEEEEEec
Confidence 11111222 33344455553333 455556666666666643 32 22 11111111122211
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.... ......+...+.+.+.+.|++. . .++++ ...|++||++++++|++++..+
T Consensus 353 ~~~~--------~~~~~~~~~~~~~~l~~~Gi~~-p--------~l~is---~~ht~~dId~~l~~l~~~l~~~ 406 (431)
T PRK06209 353 LDGN--------GQPSQAFRTLFLQETIRRGVLM-P--------SLVVS---YAHGDADIERTIDAVHGALGVY 406 (431)
T ss_pred CCcc--------cCCcHHHHHHHHHHHHHCCccc-c--------ccccc---ccCCHHHHHHHHHHHHHHHHHH
Confidence 1110 0011234456777888889743 2 13333 3557789999999999988776
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-08 Score=101.17 Aligned_cols=323 Identities=14% Similarity=0.078 Sum_probs=173.6
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE-ecCCCchHHHHHHHHcCCC-
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY-GSDQTHSALQKAAQIAGID- 195 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~-~s~~~H~s~~~a~~~~G~g- 195 (486)
+.+.|+++..-..- ...+|++|||+|+-+|+.+++..+..+ |.. .+.+++ ...-.|-+-.-++...|..
T Consensus 92 LA~~L~~~aP~~~l------~~vFf~~sGSeAvEtAlKma~qY~~~~-G~p--~r~~~Isr~~gYHG~T~ga~Sv~g~~~ 162 (449)
T COG0161 92 LAEKLAELAPEGGL------DHVFFTDSGSEAVETALKMALQYWRAR-GQP--QRKKFISRRNGYHGDTLGAMSVGGPVA 162 (449)
T ss_pred HHHHHHHhCCCCCc------cEEEEeCCchHHHHHHHHHHHHHHHhc-CCC--cceEEEEeccCcCcccchheeccCchh
Confidence 44667777652111 268999999999999999999876443 221 132233 3344554444444444421
Q ss_pred ---------CCCeEEEecCC---CC-Ccc------cCHHHHHHHHHHHHHCC-CccEEEEeecCCcc-ccccCC----ch
Q 038818 196 ---------PKNFRAIKTTK---SS-SFT------LTPESLQAAIDLDIQAG-LIPLFLCATVGTTA-ITTVDP----LG 250 (486)
Q Consensus 196 ---------~~~v~~v~~d~---~~-~~~------~d~~~L~~~l~~~~~~g-~~p~~vv~~~gtt~-~G~idp----l~ 250 (486)
...+..+|... .. .+. -..++||+.|.+. | .....+++.-.--. .|.+-| ++
T Consensus 163 ~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~---g~~~IAAfI~EPv~g~agG~~~pp~~Yl~ 239 (449)
T COG0161 163 LRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH---GPETIAAFIVEPVVGGAGGMLVPPPGYLK 239 (449)
T ss_pred hhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc---CcccEEEEEecccccccCCcccCChHHHH
Confidence 11223333321 00 011 2245556555542 3 33445665544333 566644 89
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCC-cccc
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTN-PEFL 328 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~-~~y~ 328 (486)
++.+||++||+.|+.|+.-.|+.--..-+...-.++ .-|.+++ -|.+.+.| +.|.++++++-. +.+... ..-+
T Consensus 240 ~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi-~PDi~~~--aKGLT~GY~Pl~a~l~~~~I~--~~~~~~~~~~f 314 (449)
T COG0161 240 RVREICDKYGILLIADEVATGFGRTGKMFACEHAGI-VPDILCL--AKGLTGGYLPLSAVLTSDRIY--EAFSDGDAGAF 314 (449)
T ss_pred HHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCC-CCCeeee--cccccccchhhHhHhhhHHHH--HHHhcccCCee
Confidence 999999999999999998766532111111111122 4577776 47766443 567777765521 233221 1111
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecCCC--eeEEE
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAPRN--FAVVC 405 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~--~~~v~ 405 (486)
.-..+.....+++.+++..+..---+.++++..++..+|.+.|++ +++...+.+.+ .-+..
T Consensus 315 ----------------~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~ 378 (449)
T COG0161 315 ----------------MHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGA 378 (449)
T ss_pred ----------------ccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEE
Confidence 111222345566666665543222234566777888888888876 43333343322 22334
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+.+..+... . ..-......++.+.+.++|.+ +-+. |. .+=++. -+-.|+++||++++.+++.+++..+
T Consensus 379 iElv~d~~t----~-~~f~~~~~~~~~~~~~e~Gl~-iRp~---g~-~i~~~P-Pliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 379 IELVADKAT----K-TPFEARVGARVRAAALERGLL-IRPL---GD-VIYLMP-PLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred EEEeccccc----c-cchhhhHHHHHHHHHHHCCeE-Eeec---CC-EEEEcC-CccCCHHHHHHHHHHHHHHHHHHHh
Confidence 444433210 0 000134456778888888974 4333 22 233333 2356889999999999999987664
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-08 Score=93.41 Aligned_cols=292 Identities=11% Similarity=0.019 Sum_probs=164.2
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-----------
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS----------- 207 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~----------- 207 (486)
..+|++||||||-+||+++|...- .-.+|-.....|-+-.-++...|++ .+..+.+..
T Consensus 111 ~vfF~nsGsEANelal~mar~Yt~--------~~diIa~r~~YHG~t~~t~glt~~~---~~k~~~~~~~~~~~~~~~Pd 179 (442)
T KOG1404|consen 111 VVFFVNSGSEANELALKMARLYTG--------NLDIIARRNSYHGNTLYTLGLTGLS---PWKQNFPGVASGVHHTMNPD 179 (442)
T ss_pred EEEEecCCchHHHHHHHHHHHhcC--------CceEEEeeccccCCchhhcccccCC---cccccCCCCCCcccccCCCC
Confidence 589999999999999999998631 2244545566676656666666652 222211100
Q ss_pred ---CCccc-----CHHHHHHHHHHHHHCC--CccEEEEeecCCccccccCC----chHHHHHHHHhCceEEeeccccchh
Q 038818 208 ---SSFTL-----TPESLQAAIDLDIQAG--LIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 208 ---~~~~~-----d~~~L~~~l~~~~~~g--~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+-+.= ..+.+.+.+++-...+ ..+...++......-|.+.+ +++..++|+++|..++.|+++.|+.
T Consensus 180 p~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfG 259 (442)
T KOG1404|consen 180 PYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFG 259 (442)
T ss_pred cccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccc
Confidence 00111 1333444333322111 12455666666666688876 7999999999999999999997764
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
....-+..--.++ .-|.+|+ -|.++...+.|.+++..+ +.+.+.....|.+. -.+.+..
T Consensus 260 RtG~~wgfe~h~v-~PDIvTm--AKgiGnG~Pl~AVvtt~E--Ia~v~~~~~~~fnT----------------yggnP~a 318 (442)
T KOG1404|consen 260 RTGHMWGFESHGV-VPDIVTM--AKGIGNGFPLGAVVTTPE--IADVLNQKSSHFNT----------------YGGNPVA 318 (442)
T ss_pred cccccccccccCC-CccHHHH--HhhccCCCcceeeecCHH--HHHHHHhccccccc----------------cCCCchh
Confidence 3221010000011 3455554 588887788898888765 22333332212211 1111222
Q ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCCCe--eEEEEEeecCC--CCCCCCCCccchHHHH
Q 038818 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPRNF--AVVCFRVLPSA--SGLGDGKANEGANELN 428 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~~~--~~v~f~~~~~~--~~~~~~~~~~~~~~~~ 428 (486)
.....+.|+.+-+ +++.++..+...||.+.|.++. ..+++++.+. -++...+..+. ... .+ ....
T Consensus 319 ~avg~aVL~Vike---e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~p-----p~--~~~~ 388 (442)
T KOG1404|consen 319 CAVGLAVLKVIKE---ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKP-----PA--TAEG 388 (442)
T ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCC-----cc--hHHH
Confidence 2222334444433 4566778889999999997753 3556655432 23333332221 000 01 3334
Q ss_pred HHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
..+.+.+.+.|.++ ....+.|. ++|++. ..-.|++|||.+++..
T Consensus 389 ~~i~~~cke~Gvlv-g~g~i~G~-vfriaP-PlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 389 AVIGEQCKELGVLV-GKGGIHGN-VFRIAP-PLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHhCeee-ecccccce-EEEecC-CeeccHHHHHHHHHHH
Confidence 56677788889854 55555655 899987 3355888997777755
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-09 Score=97.83 Aligned_cols=306 Identities=13% Similarity=0.087 Sum_probs=176.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCe-EEEecCCCchHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRL-VVYGSDQTHSALQ 186 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~H~s~~ 186 (486)
+..+..+-.++.+.+++|++.|+++ .-+++.+|+|...-++.+..... .+. -|....-+..+..
T Consensus 45 sk~~~~v~~~a~~~lreLl~iPd~Y-----~VlflqGGat~qf~~~p~nLl~~----------~~~~yv~~g~Ws~~a~~ 109 (365)
T COG1932 45 SKEFKNVLEEAEKDLRELLNIPDDY-----KVLFLQGGATGQFAMAPMNLLGK----------RGTDYVDTGAWSEFAIK 109 (365)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCccHHHHHHHHHhhhcc----------cCceeEeeeehhHhHHH
Confidence 3445666677889999999999986 23455556665544443333221 121 2322222333333
Q ss_pred HHHHHcCCCCCCeEEEecCCCCC-cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC-CchHHHHHHHHhCceEE
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSS-FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD-PLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~-~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id-pl~~I~~i~~~~g~~lh 264 (486)
.+ +.++... .+..+...+.+. ...+++... +.++. .+|..++..|.+|.-- +...+.. +..++
T Consensus 110 eA-~~~~~~~-~~~~~~~~~~~~~~iP~~~~~~--~~~~~------ayv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v 174 (365)
T COG1932 110 EA-KKVGKQP-KLIDARIEEAGYGSIPDLSKWD--FSDND------AYVHFCWNETISGVEVPELPDIGS-----DGLLV 174 (365)
T ss_pred HH-HHhcccc-cccccceeccCccCCCChhhcc--cCCCc------cEEEEecCCcccceEccCCCCCCC-----CceEE
Confidence 33 3333200 222222111111 234555444 33321 2699999999999753 3333331 17899
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-Cccccc-CccCCCCCccCCC
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLR-NKASDSKQVVDYK 342 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~-~~~~~~~~~~~~~ 342 (486)
+|++.+.+....+ +.+.|.|.++.+|.++ |-|.+++++|++.. .+.-.. .|+-+. ......+..++
T Consensus 175 ~D~SS~ilsr~iD--------vsk~dviyagaQKnlG-paGltvvIvr~~~l-~r~~~~~~P~if~y~~~~~~~s~yN-- 242 (365)
T COG1932 175 ADASSAILSRPID--------VSKYDVIYAGAQKNLG-PAGLTVVIVRPDLL-ERAESYTLPSIFDYLTHADNGSMYN-- 242 (365)
T ss_pred EecccHHhcCCCC--------hhHcceEEEehhhccC-ccceEEEEEcHHHH-hcccccCCchHhhchhhhccCCccC--
Confidence 9987755443332 4589999999999987 56799999987643 222221 221111 00000011110
Q ss_pred CccccCCCCCCchHHHHH---HHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-ecC--C-CeeEEEEEeecCCCC
Q 038818 343 DWQITLSRRFRALKLWLV---LRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEI-VAP--R-NFAVVCFRVLPSASG 414 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~---l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~~~--~-~~~~v~f~~~~~~~~ 414 (486)
-...++++.. ++.+ ...|++.+.++..+.++.|.+.+.+. +|.. ... . ..-.|||.+..
T Consensus 243 --------TPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~~~~RS~mnV~f~~~~---- 309 (365)
T COG1932 243 --------TPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS-DFYRNLVAKANRSRMNVTFTLVD---- 309 (365)
T ss_pred --------CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-CccccccchhhccceeEEEEcCc----
Confidence 0122333332 2222 44678999999999999999999987 4432 111 1 23468888874
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.++++.+.+++.+.|.+...+. +-.+.+|+++-| ....++++.|++-++...++
T Consensus 310 ----------~~ld~~fv~eae~~gl~~lkGh--r~vgGmRasiyn-A~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 310 ----------AELDKGFVAEAEAAGLIYLKGH--RSVGGLRASIYN-AVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred ----------HHHHHHHHHHHHHcCCceeccc--cCCCceeeeeec-CCCHHHHHHHHHHHHHHHHh
Confidence 5677888888888887665552 223449999965 56667999999999887654
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-08 Score=92.09 Aligned_cols=302 Identities=12% Similarity=0.156 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH----
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA---- 188 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a---- 188 (486)
.+--+..+.+.++||++. ..-+++|.||+-.|+..+|.|-....+.......++.+-..-|-.-..+
T Consensus 101 d~~~~f~~~vt~lf~~~k---------vlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s 171 (427)
T KOG1402|consen 101 DVLGEFAEYVTKLFGYDK---------VLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLS 171 (427)
T ss_pred hhHHHHHHHHHHhcCcce---------eeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEec
Confidence 344455578899999864 3457778999999999999876544322111122222222233110000
Q ss_pred ---HHHcCCCC---CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 189 ---AQIAGIDP---KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 189 ---~~~~G~g~---~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
-.+.|.|. ..+..||.+ |.++|+.+|+... ....++.--....|.+-| +++..++|.+
T Consensus 172 ~d~ds~~~fgp~~P~~~~~v~Y~-------d~eale~~l~~~~-----vaaFivEPIQGEaGVvvP~~GYL~~vreLCtk 239 (427)
T KOG1402|consen 172 TDPDSWDGFGPFLPGVVDKVPYG-------DAEALEVALKSPN-----VAAFIVEPIQGEAGVVVPPPGYLKKVRELCTK 239 (427)
T ss_pred CCcchhhccCCCCCCcceeeccC-------CHHHHHHHhcCCC-----eeEEEeeccccccceEeCCchhHHHHHHHHHh
Confidence 01222221 125566653 8899999998632 223455555667788754 8999999999
Q ss_pred hCceEEeeccccchhc----cCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 259 YSIWVHVDAAYAGSAC----ICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~----~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
|+++++.|..+.|... .+-++... .-|.+.+ .|.+. +-++.+.+++.++-.+ ...|+--
T Consensus 240 ynvl~I~DEvQTGl~RTGk~la~d~env-----~PDivil--gKalSGG~~Pvsavl~~~~im~----~~~pgeH----- 303 (427)
T KOG1402|consen 240 YNVLLIADEVQTGLARTGKLLACDYENV-----RPDIVIL--GKALSGGVYPVSAVLADDDIML----NIKPGEH----- 303 (427)
T ss_pred hcEEEEehhhhhcccccCcEEEeehhhc-----CCCeEEE--eccccCCeeeeEEEEecHHHHh----ccCCCcc-----
Confidence 9999999999876432 11122221 4565554 46665 4456777776654332 1121110
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC-e-EEecC--CCeeEEEEEee
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR-F-EIVAP--RNFAVVCFRVL 409 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~-~-~~~~~--~~~~~v~f~~~ 409 (486)
..+.....|+.-.+++.+..-.-+.+.+++..+...|+.+|.+++. | .++.. -..-+....+.
T Consensus 304 -------------gsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~ 370 (427)
T KOG1402|consen 304 -------------GSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVIN 370 (427)
T ss_pred -------------ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEec
Confidence 0111234566666666654444567888999999999999988752 2 01111 11222333333
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+... . ....-.++-.+.+.|.+ ..+..+ ..+||.. -...+++|+++-+++|.+.+
T Consensus 371 ~~~~--------~--~~~aw~~cl~lk~~g~L--AkptH~--~IiRfaP-PL~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 371 PSKT--------S--GQDAWDVCLALKENGLL--AKPTHG--NIIRFAP-PLVISEEDLREGIEAIEKTI 425 (427)
T ss_pred cccc--------c--chhHHHHHHcccccccc--cCCCCC--CeEEecC-CcccCHHHHHHHHHHHHHHh
Confidence 3210 1 11122445455566752 222222 3799987 35678999999999998865
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=93.73 Aligned_cols=329 Identities=13% Similarity=0.122 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
...-+...++.+.|..+. ...+.++ -.+|+..++..--+-..++ .+..-....+- ..||++..-+++-|
T Consensus 112 ~De~il~l~~~iVGA~e~-------EvavmNs-LTvNlh~Ll~sFyKPTekR-~KILlE~kaFP--SDhYAiesQ~~lhG 180 (465)
T KOG3846|consen 112 IDEPILPLLAPIVGAQEN-------EVAVMNS-LTVNLHSLLISFYKPTEKR-FKILLEKKAFP--SDHYAIESQCKLHG 180 (465)
T ss_pred cchhhhhhhhhhccCCch-------hhhhHhh-hhhHHHHHHHHhcCCcchh-hhhhhccCCCC--chHHHHHhhhhhcC
Confidence 344566788899998765 3444443 2356555554322100000 00000111222 37999999999999
Q ss_pred CC-CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 194 ID-PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 194 ~g-~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+. .+..+.+...+. .-.+..+++-..|++ +|....+|+.+.....||..-++.+|...-+..|+++-.|-||+.+
T Consensus 181 ~~~e~sm~~iePREG-EetlRteDILd~IEk---ngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvg 256 (465)
T KOG3846|consen 181 ISPENSMIQIEPREG-EETLRTEDILDTIEK---NGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVG 256 (465)
T ss_pred CChHHheEEeccccc-ccchhHHHHHHHHHh---cCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhc
Confidence 95 335566665543 347888888777765 4666778888889999999999999997778889999999998765
Q ss_pred hccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccC-----CCCccc
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD-----YKDWQI 346 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-----~~~~~~ 346 (486)
-....-+.+ ++|+-+|...|++. ++.|.|.+++.++..- .......++.....+.-..+.+ .+..++
T Consensus 257 NVpL~LHdW------gVDFACWCSYKYlnaGaGgIgGlFvHekh~~-~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~Gf 329 (465)
T KOG3846|consen 257 NVPLQLHDW------GVDFACWCSYKYLNAGAGGIGGLFVHEKHTK-ESLPRLAGWWGHDPSKRFQMDNVLELIPGALGF 329 (465)
T ss_pred CCceEEeec------CCceEEEeeecccccCCCccceeeeehhhhc-chhhHHhhhccCCcchhhhhccccccCcccccc
Confidence 433221111 89999999999999 6667888888765331 1112222333222111111111 111111
Q ss_pred cCCCCC--CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC-----------eEEecCC----CeeEEEEEee
Q 038818 347 TLSRRF--RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR-----------FEIVAPR----NFAVVCFRVL 409 (486)
Q Consensus 347 ~~sr~~--~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~-----------~~~~~~~----~~~~v~f~~~ 409 (486)
..|.+. ...++-.++..+..-.+.++.++..-++.|+...++...+ +.++.|. +....+..+.
T Consensus 330 RiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fs 409 (465)
T KOG3846|consen 330 RISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFS 409 (465)
T ss_pred ccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeC
Confidence 122221 1245555666666667888888989999998888765432 2333332 1223333333
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.+ +..+++.|.++|.++ .-...+.+|++....+++-.||-.++++|.++++.+-+
T Consensus 410 sp----------------~~~vfqeL~krGv~~----DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~es 464 (465)
T KOG3846|consen 410 SP----------------TPKVFQELHKRGVIG----DKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLES 464 (465)
T ss_pred CC----------------chHHHHHHHHcCeec----cccCCCceEeecchhhccHHHHHHHHHHHHHHHHHhhc
Confidence 22 235666777778642 12345789999988899999999999999999887643
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-07 Score=89.84 Aligned_cols=224 Identities=13% Similarity=0.023 Sum_probs=131.9
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC---C-C-CcccC
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK---S-S-SFTLT 213 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~---~-~-~~~~d 213 (486)
...|.++||+||..||.+||.....+.... .-.+|......|-----++...+. .-...|.++ + . ----|
T Consensus 118 rvff~nsGTeAne~ALK~Ark~~~~~~~~~--~t~~Iaf~nsyHG~tlgals~~~~---s~y~~~~~p~~p~v~~~~ynd 192 (433)
T KOG1401|consen 118 RVFFCNSGTEANETALKFARKFTGKKHPEK--KTKFIAFENSYHGRTLGALSVTGN---SKYGLPFDPIAPDVVTAEYND 192 (433)
T ss_pred EEEEecCCcHHHHHHHHHHHHhhcccCCcc--ceeEEEEecCcCCcchhHHHhhcc---cccCCCCCCCCCceeecccCC
Confidence 689999999999999999998654332111 112444555566433333332222 111111110 0 0 00237
Q ss_pred HHHHHHHHHHHHHCCCccEEEEeecCCcccccc--CC--chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCC
Q 038818 214 PESLQAAIDLDIQAGLIPLFLCATVGTTAITTV--DP--LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA 289 (486)
Q Consensus 214 ~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i--dp--l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~a 289 (486)
+.+|++.++.... . +..|++....-.-|.+ +| +..|.++|+++|+.++.|+.+.|+....+.+....-++ .-
T Consensus 193 ~t~l~k~~~~h~~--~-IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~-~P 268 (433)
T KOG1401|consen 193 STALEKLFESHKG--E-IAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGV-TP 268 (433)
T ss_pred HHHHHHHHHhCCC--c-eEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCc-CC
Confidence 9999999987642 2 4467777777655555 33 67999999999999999999988655554444433332 45
Q ss_pred CceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhc-
Q 038818 290 DSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFG- 365 (486)
Q Consensus 290 Dsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g- 365 (486)
|..|+ -|.++...+.|..+++++- ...++...+ +.+ ..+-...++++-+ ++..+.
T Consensus 269 DI~t~--aK~L~gGlPigA~~v~~kV--~~~i~~~~~-l~h----------------g~Tf~gnpLacsa~~~~l~~l~~ 327 (433)
T KOG1401|consen 269 DITTV--AKPLGGGLPIGATGVRDKV--AEMISPGDH-LYH----------------GGTFSGNPLACSAGIKVLDELKD 327 (433)
T ss_pred cceee--hhhccCCceeEEEeehHHH--HhhcCCCCc-ccc----------------CcccCCChhhhhHHHHHHHHHcC
Confidence 66665 6888877889999998762 223332222 111 1111234444433 344443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 366 VANLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 366 ~~g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
.+.+.++-+....+++.+.+.+.+-+.
T Consensus 328 ~e~~k~vs~~~k~L~~~l~e~~~~~~~ 354 (433)
T KOG1401|consen 328 PETLKNVSKIGKELRKLLDEYLKKTPN 354 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 344555556666777777777776543
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-06 Score=93.23 Aligned_cols=231 Identities=14% Similarity=0.069 Sum_probs=125.2
Q ss_pred HHHHHHHHHHH--HCCCccEEEEeecC-CccccccCC----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC
Q 038818 215 ESLQAAIDLDI--QAGLIPLFLCATVG-TTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287 (486)
Q Consensus 215 ~~L~~~l~~~~--~~g~~p~~vv~~~g-tt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~ 287 (486)
+.+++.|++.. ..+..+..|++.-. ....|.+-| +++|.++|++||+.|+.|+++.|+.-...-+....-++
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv- 645 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGC- 645 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCC-
Confidence 55666665421 12334556666653 344466643 89999999999999999999988643322222212233
Q ss_pred CCCceeeccccccCCCC-cceEEEeeCchHHHHHhcCCc--ccccCccCCCCCccCCCCccccCCCCCCchHHHHH---H
Q 038818 288 GADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALSTNP--EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV---L 361 (486)
Q Consensus 288 ~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l 361 (486)
..|.+++ -|.+++.+ +.|.++++++- .+.|.... ..+. ...+....++++.++ +
T Consensus 646 ~PDIi~~--gKgLtgG~~Plaa~l~~~~I--~~~f~~~~~~~~~~----------------hg~Ty~gnpl~cAaala~L 705 (817)
T PLN02974 646 KPDIACY--AKLLTGGLVPLAATLATEEV--FEAFRGPSKLDALL----------------HGHSYTAHPMGCAAAAKAL 705 (817)
T ss_pred CCCEEee--cccccCCCCccEEEEEcHHH--HHhhccccccCCcc----------------cCCCCCcCHHHHHHHHHHH
Confidence 4788876 58888774 78888887552 22332110 0000 011222344444444 4
Q ss_pred HHhchH-HHHHHHHHHHHHHHHHHHHH----hCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH
Q 038818 362 RSFGVA-NLRNFLRSHVRMAQLFQELV----GGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN 436 (486)
Q Consensus 362 ~~~g~~-g~~~~~~~~~~~a~~l~~~L----~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 436 (486)
+.+-.+ -++.+.++..++..++.+.| .++|.+.=+. -...++.+.+..+... .........++.+.+.
T Consensus 706 ~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VR-g~Gl~~~iel~~~~~~------~~~~~~~a~~v~~~~~ 778 (817)
T PLN02974 706 QWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVV-SLGTVLALELDAEGSG------SGYSSLYARSVVRRLR 778 (817)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEE-eeeeEEEEEEecCCcc------cccchHHHHHHHHHHH
Confidence 444332 23344455555555555444 4444332111 1123445555432100 0001234566777777
Q ss_pred -hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 437 -ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 437 -~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
++|.+. .+ . + +.+|+.. .+.+++++++++++.|.+.+
T Consensus 779 ~~~Gl~~-r~--~-G-nvi~l~p-P~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 779 REDGIYA-RP--L-G-NVVYLMC-GPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred HhCCEEE-Ee--c-C-CEEEEeC-CCCCCHHHHHHHHHHHHHHh
Confidence 788643 22 1 2 4678765 57889999999999998754
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-08 Score=87.97 Aligned_cols=277 Identities=12% Similarity=0.063 Sum_probs=157.1
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHH
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQ 218 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~ 218 (486)
...+--|+-|.+-..+.+.+.. ++..|+....++.-..-.|.+.++ +|+.+|.++ +|.||+|++.
T Consensus 88 nic~GvGsDE~ID~iiR~~c~P----------GkeKIl~cPPtysMY~v~A~iNd~---eVvkvpl~p--dF~lnvdai~ 152 (375)
T KOG0633|consen 88 NICVGVGSDELIDLIIRCVCDP----------GKEKILDCPPTYSMYVVDAAINDA---EVVKVPLNP--DFSLNVDAIA 152 (375)
T ss_pred ceEEecCcHHHHHHHHhheecC----------CccceeecCCcceeEEEEeecCCc---eEEEecCCC--CccccHHHHH
Confidence 4455455455554445555442 334454443333222223456677 999999987 7899999999
Q ss_pred HHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh-CceEEeeccccchhccCccchhhhcCCCCCCc-eeecc
Q 038818 219 AAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY-SIWVHVDAAYAGSACICPEFRHFIDGIEGADS-FSLNA 296 (486)
Q Consensus 219 ~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~-g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDs-i~~~~ 296 (486)
+.++.+.+ |.++++|++.|++|.+-..+.|.+|.+-- |..++||.||--+-......+ +... .-.. +.-..
T Consensus 153 evl~~ds~----iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~-lV~k--YpNLivlqTl 225 (375)
T KOG0633|consen 153 EVLELDSK----IKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMK-LVKK--YPNLIVLQTL 225 (375)
T ss_pred HHHhcccc----ceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccch-HhHh--CCceeehhhh
Confidence 99987643 67899999999999998777777777654 688999999843321110100 0111 1111 22234
Q ss_pred ccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHH
Q 038818 297 HKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNF 372 (486)
Q Consensus 297 hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~ 372 (486)
.|.++ +....|+-++.-. ..+-..+..++|=.. .+.--++++++ ..+.++..
T Consensus 226 SKsfGLAGiRvG~~~~~~~-ia~iln~~KaPYNiS-----------------------~~~s~~AL~Als~~n~kkme~~ 281 (375)
T KOG0633|consen 226 SKSFGLAGIRVGYGAFPLS-IAEILNRAKAPYNIS-----------------------VAGSVAALAALSDSNGKKMEDV 281 (375)
T ss_pred hhhcCcceeEeecccccHH-HHHHHHhccCCcccc-----------------------chhHHHHHHhcCcccchHHHHH
Confidence 55555 3333444333222 111122333344211 11112333333 23455666
Q ss_pred HHHHHHHHHHHHHHHhCCCCeE-EecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeee-eEC
Q 038818 373 LRSHVRMAQLFQELVGGDNRFE-IVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHG-MVA 449 (486)
Q Consensus 373 ~~~~~~~a~~l~~~L~~~~~~~-~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~-~~~ 449 (486)
.+...+-..+|.+.|.++|.+. ..++...+.+..++.+.. +...++++..+ ..+|+++-... ...
T Consensus 282 rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~------------n~~akkly~q~at~~gVvVRfrgse~~ 349 (375)
T KOG0633|consen 282 RDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGD------------NGMAKKLYKQDATKMGVVVRFRGSEEG 349 (375)
T ss_pred HHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCC------------cHHHHHHHHHHHHhcceEEEEcCCccc
Confidence 6777777888889998887664 344556777777776532 45556665554 45676432222 222
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 450 GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 450 ~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
-.+++|++++. +|+=+-+++-+++
T Consensus 350 c~G~lRitvGt----~EentvL~k~~K~ 373 (375)
T KOG0633|consen 350 CKGYLRITVGT----PEENTVLMKCLKQ 373 (375)
T ss_pred cceeEEEEcCC----cccchHHHHHHHh
Confidence 37899999853 3345556665554
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-07 Score=90.06 Aligned_cols=189 Identities=13% Similarity=0.018 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.++|.++++-.. ....++++|++|+..|+..+|...... ...+ +..++......|-...-+...
T Consensus 58 ~~~~~~la~~L~~~~p~~~-------~~v~f~~sGseAve~Alkla~~~~~~~-~~~~-r~~il~~~~~yHG~t~~~~s~ 128 (339)
T PF00202_consen 58 HPEAAELAEKLAELFPGGL-------DRVFFANSGSEAVEAALKLARQYHNKR-AYTG-RRKILAFEGSYHGRTLGALSL 128 (339)
T ss_dssp EHHHHHHHHHHHHHSSTTE-------EEEEEESSHHHHHHHHHHHHHHHHHHT-HHHT-TTEEEEETTTB-TSSHHHHHH
T ss_pred ccchhhhhhhhhhcccccc-------ceeeeccCchHHHHHHHHHhhcccccc-cccC-CceEEEeeeeeeccCcccccc
Confidence 4445567788888883322 268999999999999999999321110 0011 334444555566433333332
Q ss_pred cC---------CCCCCeEEEecCCCCC---cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHH
Q 038818 192 AG---------IDPKNFRAIKTTKSSS---FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDI 255 (486)
Q Consensus 192 ~G---------~g~~~v~~v~~d~~~~---~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i 255 (486)
.+ .....+..+|.+.... ..-..+.+++.+.+... .....|++.-.....|.+.| +++|.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iaavivEPi~g~~G~~~~~~~~l~~l~~l 206 (339)
T PF00202_consen 129 TGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNA--DEIAAVIVEPIQGEGGMIPPPPEYLRELREL 206 (339)
T ss_dssp SSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHG--GGEEEEEEESSBTTTTSBEE-TTHHHHHHHH
T ss_pred cCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcC--CcEEEEEEeccccccCccccccchhhehccc
Confidence 21 1123567777652100 00012224444443322 23456777776666676532 7999999
Q ss_pred HHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc
Q 038818 256 AKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
|++||+.+++|+.+.|+.....-+.....++ ..|.++++ |.++...+.|.++++++
T Consensus 207 c~~~gillI~DEV~tG~gRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~p~sav~~~~~ 262 (339)
T PF00202_consen 207 CREHGILLIADEVQTGFGRTGKFFASEHYGV-DPDIVTFG--KGLGGGLPISAVLGSEE 262 (339)
T ss_dssp HHHTT-EEEEEETTTTTTTTSSSSGHHHHTS-SSSEEEEE--GGGGTTSSEEEEEEEHH
T ss_pred ccccccceecccccccccccCCccceecccc-cCcccccc--cchhhhhhcccccccch
Confidence 9999999999999987643322222222344 57999986 99987789999998865
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=92.02 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=102.2
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEE----EecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCH
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVV----YGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTP 214 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v----~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~ 214 (486)
.+++++..+.|.+..+.+.... ...++ .+. ..|+++...++..|. +++.|... .+-..
T Consensus 85 a~~ivnnn~aAVll~~~al~~~----------~EvVis~g~lV~-gg~~~v~d~~~~aG~---~l~EvG~t----n~t~~ 146 (395)
T COG1921 85 AAAIVNNNAAAVLLTLNALAEG----------KEVVVSRGELVE-GGAFRVPDIIRLAGA---KLVEVGTT----NRTHL 146 (395)
T ss_pred heeeECCcHHHHHHHHhhhccC----------CeEEEEcccccc-CCCCChhHHHHHcCC---EEEEeccc----CcCCH
Confidence 5677887666665544443321 12122 122 478999999999999 88777643 37799
Q ss_pred HHHHHHHHHHHHCCCccEEEEeecCCcccccc--CCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCce
Q 038818 215 ESLQAAIDLDIQAGLIPLFLCATVGTTAITTV--DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSF 292 (486)
Q Consensus 215 ~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i--dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi 292 (486)
.+++.+|.+.++ ++.-++.++. |.. -+++++++|||++|++++||.+-|...-.-+..+..++ .++|.+
T Consensus 147 ~d~~~AIne~ta------~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la--~GaDLV 217 (395)
T COG1921 147 KDYELAINENTA------LLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA--LGADLV 217 (395)
T ss_pred HHHHHHhccCCe------eEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh--cCCCEE
Confidence 999999998875 4555554443 443 46778999999999999999988664332233333332 389999
Q ss_pred eeccccccCCCCcceEEEeeCchHH
Q 038818 293 SLNAHKWFFTTLDCCCLWVKNPNAL 317 (486)
Q Consensus 293 ~~~~hK~l~~p~~~g~~~~~~~~~~ 317 (486)
++|++|.|++|. .|++.- ++++.
T Consensus 218 ~~SgdKllgGPq-aGii~G-kKelI 240 (395)
T COG1921 218 SFSGDKLLGGPQ-AGIIVG-KKELI 240 (395)
T ss_pred EEecchhcCCCc-cceEec-hHHHH
Confidence 999999999996 565554 44444
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-06 Score=82.63 Aligned_cols=281 Identities=16% Similarity=0.087 Sum_probs=170.3
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHH
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQ 218 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~ 218 (486)
..+=|.|||-|+-.+..-..... ++..|++|+++..-........|+ ++...|.-...+..+|.+.+-
T Consensus 96 ~t~Qt~GGTGAL~~~A~fl~~~~---------~~~~vwis~PtW~NH~~If~~aGl---~v~~Y~Yyd~~~~~~df~~ml 163 (396)
T COG1448 96 ATVQTLGGTGALRVAADFLARFF---------PDATVWISDPTWPNHKAIFEAAGL---EVETYPYYDAETKGLDFDGML 163 (396)
T ss_pred hheecCCcchHHHHHHHHHHHhC---------CCceEEeCCCCcHhHHHHHHhcCC---ceeeeeccccccccccHHHHH
Confidence 45678899988766654443321 667799999998887888888999 998888643334469999999
Q ss_pred HHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHHHHhCceEEeeccccchhccCccc----hhhhcCCCCCCc
Q 038818 219 AAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEF----RHFIDGIEGADS 291 (486)
Q Consensus 219 ~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~----~~~~~~~~~aDs 291 (486)
..|+...+. -+++.=.+++||||.- +..++|.++.++.|..-.+|-||-|+.-..++- |...... .-=.
T Consensus 164 a~L~~a~~~---~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~-~~~l 239 (396)
T COG1448 164 ADLKTAPEG---SVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVG-PELL 239 (396)
T ss_pred HHHHhCCCC---CEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhC-CcEE
Confidence 888875432 2334445679999954 457899999999999999999997765433321 1111111 1146
Q ss_pred eeeccccccCCCC-cceE--EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHH------HHH
Q 038818 292 FSLNAHKWFFTTL-DCCC--LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL------VLR 362 (486)
Q Consensus 292 i~~~~hK~l~~p~-~~g~--~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~------~l~ 362 (486)
++.|+.|.|+.=. -.|. ++..+.+...+.++.-..-+....+ -. +....++.. .|+
T Consensus 240 va~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~yS------------nP---P~~Ga~vva~IL~~p~Lr 304 (396)
T COG1448 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYS------------NP---PAHGAAVVATILNNPELR 304 (396)
T ss_pred EEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccC------------CC---chhhHHHHHHHhCCHHHH
Confidence 7888899887321 1333 3334544443333221111111100 00 001111111 244
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhCC-C--CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcC
Q 038818 363 SFGVANLRNFLRSHVRMAQLFQELVGGD-N--RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASG 439 (486)
Q Consensus 363 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 439 (486)
.....-+..+.++..++++.|.+.|++. + .|..+ ..+.++++|.-.. .+...++++ +.|
T Consensus 305 a~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i-~~Q~GMFsy~Gls--------------~~QV~rLre---e~~ 366 (396)
T COG1448 305 AEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFI-ISQRGMFSYTGLS--------------PEQVDRLRE---EFG 366 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchH-hhcCceeecCCCC--------------HHHHHHHHH---hcc
Confidence 4445567788899999999999999873 2 35554 3455777775221 222233443 346
Q ss_pred cEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 440 QLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 440 ~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+..+..+ |+++. ..++..|+.+.++|.++
T Consensus 367 IY~v~sG--------Ri~va--Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 367 IYLVASG--------RINVA--GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred EEEecCC--------eeeec--cCChhhHHHHHHHHHhh
Confidence 5433322 89985 44666899999998765
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-06 Score=81.71 Aligned_cols=332 Identities=17% Similarity=0.175 Sum_probs=178.4
Q ss_pred CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEc--CCchHHHHHHHHHHHHHHHHHccccCCCCeEEEe
Q 038818 100 VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQ--GTTCEAILCTLAAARDQILNEIGRENISRLVVYG 177 (486)
Q Consensus 100 ~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t--~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~ 177 (486)
...-.|..+...-.|... +.+.||+.-. +-| +-|.|.++..+..-.. +..++.+..+
T Consensus 70 ~GDEAYagsrs~~~L~~a----vkdifGfq~~---------iPthQGRgAE~Il~~i~ik~~--------~~~pg~~~~~ 128 (471)
T COG3033 70 RGDEAYAGSRSYYALADA----VKDIFGFQYT---------IPTHQGRGAENILIPILIKKG--------EQEPGSKMVA 128 (471)
T ss_pred ccchhhcccccHHHHHHH----HHHhcCceee---------eeccCCccHHHHHHHHHhhhc--------cccCCccccc
Confidence 334466777766666655 4566676421 222 2234555444332111 0114444555
Q ss_pred cCCCchHHHHH-HHHcCCCCCCeEEEecCCCC--------CcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc---c
Q 038818 178 SDQTHSALQKA-AQIAGIDPKNFRAIKTTKSS--------SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT---T 245 (486)
Q Consensus 178 s~~~H~s~~~a-~~~~G~g~~~v~~v~~d~~~--------~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G---~ 245 (486)
....|+--.++ .+..|. .++-+++++.. .|.+|++.|+++|++.-. ..+|.++.....++..| +
T Consensus 129 ~sN~~FdTTr~h~~~ng~---~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~-~nvp~I~~tiT~NsagGQpVS 204 (471)
T COG3033 129 FSNYHFDTTRGHIQINGA---TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGA-DNVPYIVLTITNNSAGGQPVS 204 (471)
T ss_pred cccceecchhHHHHhcCC---ccccccccccccccccCCCCCccCHHHHHHHHHHhCc-ccCcEEEEEEeccccCCCcch
Confidence 56778765444 455566 55656655421 368999999999998643 33565444444555555 3
Q ss_pred cCCchHHHHHHHHhCceEEeeccccc-hhccC----ccchhh-h-----cCCCCCCceeeccccccCCCCcceEEEeeCc
Q 038818 246 VDPLGPLCDIAKRYSIWVHVDAAYAG-SACIC----PEFRHF-I-----DGIEGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 246 idpl~~I~~i~~~~g~~lhvD~a~g~-~~~~~----~~~~~~-~-----~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
++.++++.+||++|++.++.|+|.-+ .+.+. +.+++. + .-++.+|-++.|+-|=..++. .|++.++|+
T Consensus 205 m~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnm-GGfl~~~D~ 283 (471)
T COG3033 205 MANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNM-GGFLCFKDD 283 (471)
T ss_pred HHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceecc-ccEEEecCc
Confidence 57899999999999999999997532 22332 222211 1 114579999999999998887 478888888
Q ss_pred hHH---HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhCC
Q 038818 315 NAL---IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANL-RNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 315 ~~~---~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~ 390 (486)
..+ ..+.... +.. .+...++. -.||...++ ...|+ ++. ...+++.....+||.+.|.+.
T Consensus 284 ~~fDvy~~~~~~~---V~~-----eG~~tYGg---l~Grdmeal--AvGL~----e~~~~~yl~~Rv~Qv~YL~~~l~~~ 346 (471)
T COG3033 284 SFFDVYEECRTLV---VVQ-----EGFPTYGG---LAGRDMEAL--AVGLR----EGVNFDYLAHRVAQVQYLADGLEEA 346 (471)
T ss_pred cHHHHHHHHHhhe---Eee-----ccccccCc---ccchhHHHH--HHHHH----HhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 532 2111111 111 11111211 112222222 22232 221 234556666778999999887
Q ss_pred CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE------C-------CEeEEEEE
Q 038818 391 NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV------A-------GIYFIRFA 457 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------~-------~~~~lR~~ 457 (486)
|+.++.|...+-+.......-...+. +.-....+.-+| ..+.|+=.+.-+.+ + .-..+|+.
T Consensus 347 -GVpi~~paGGHavfvda~~~lphip~--eqFpaqala~el---y~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRlt 420 (471)
T COG3033 347 -GVPIVQPAGGHAVFVDAGKFLPHIPA--EQFPAQALACEL---YKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLT 420 (471)
T ss_pred -CCeeEecCCCceEEeehhhhcCCCCh--hhCcHHHHHHHH---HHHhCeeeeeeeceecccCCCccccCCCchheeeEe
Confidence 88887665544443322111000000 000011222222 23445422211111 0 12579999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHH
Q 038818 458 VGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+--..-|.+++|.++++++++.+
T Consensus 421 ipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 421 IPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred ccccccchhHHHHHHHHHHHHHh
Confidence 84334467899999999998765
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-06 Score=88.38 Aligned_cols=361 Identities=14% Similarity=0.107 Sum_probs=201.4
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcce--ecCCCCCHHHHHHHHHHhh-----cCCCcccccc
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFA--YFPSSGSIAGFLGEMLSSG-----FNVVGFNWMS 107 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~l~~~-----~n~~~~~~~~ 107 (486)
|+.++..-++.+| .|..+.+.++.+.....++. -|. .|.| |..+ ..++.+...++..- +.++....++
T Consensus 85 P~~Ir~~~~l~~~-~~~~E~eml~~l~~ia~kNk-~~k--sfIGmGYyn~-~vP~~I~RNilenp~W~TqYTPYQ~EIsQ 159 (1001)
T KOG2040|consen 85 PKSIRLKRPLKMD-KPLCESEMLQHLEDIASKNK-IWK--SFIGMGYYNT-HVPAVILRNILENPGWYTQYTPYQAEISQ 159 (1001)
T ss_pred chhhcccchhcCC-CCcCHHHHHHHHHHHHhhhh-HHH--Hhhccccccc-cCcHHHHHHhhhCCcceeccCCCchhhhh
Confidence 4555555555664 56899999999998765554 343 3544 4432 33444444444321 1222222233
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHH-HHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAA-ARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~-a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
+..-..+-.+ .+++++.|+|-+ +..+..-||.|. .|+.+ .+.. ++...+++...|+-..
T Consensus 160 GRLEsllNyQ--Tmi~dlTGL~~a-------NASLLDEgTAaa-EAm~l~~~~~----------krkk~vvd~~~hpqtl 219 (1001)
T KOG2040|consen 160 GRLESLLNYQ--TMITDLTGLPMA-------NASLLDEGTAAA-EAMALCNRIN----------KRKKFVVDSNCHPQTL 219 (1001)
T ss_pred hhHHHHhhhH--HhhhhccCCccc-------chhhhccchhHH-HHHHHHHhhc----------ccceEEecCCCCcchh
Confidence 4333333334 678999999876 566666677555 33333 2222 3334777888997644
Q ss_pred HHHH----HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAAQ----IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~~----~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..++ .+|+ ++... |++..-... + ....|++..+.| .|.+.|.+++++.+++.|..
T Consensus 220 sV~~TRa~~~~i---~v~~~----------~~~~~~~s~-~------~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s~ 278 (1001)
T KOG2040|consen 220 SVVKTRAKGFGI---KVVVS----------DIKEADYSS-K------DVSGVLVQYPDT-EGSVLDFDELVELAHANGSL 278 (1001)
T ss_pred hhhhccccccce---eEEec----------CHHHhhccc-c------ceeEEEEEcCCC-CCcccCHHHHHHHhhccCce
Confidence 4433 3333 32222 222211111 1 123466666666 59999999999999999988
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc-----eEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC-----CCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~-----g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
+++-.-.-+..++-|... =+||....+.+.+ ++|.|- |++.+++. ..+..|+.+.+...+..+
T Consensus 279 vv~atDLLaLtiLrpPge------fGaDIavGSsQRF-GVPlGYGGPHAaFfAv~~~-----l~R~mPGRiiGvtkD~~g 346 (1001)
T KOG2040|consen 279 VVMATDLLALTILRPPGE------FGADIAVGSSQRF-GVPLGYGGPHAAFFAVSES-----LVRMMPGRIIGVTKDALG 346 (1001)
T ss_pred EEEeehhhHHHccCChhh------cCceeeecccccc-CccccCCCchHHHHHHHHH-----HHhhCCCceEeeeecccc
Confidence 766332222222222211 1899999998886 456553 34444322 224455555443222111
Q ss_pred ccCCCCcccc----CCCCC-------CchHHHHHH-----HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe
Q 038818 338 VVDYKDWQIT----LSRRF-------RALKLWLVL-----RSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF 401 (486)
Q Consensus 338 ~~~~~~~~~~----~sr~~-------~~l~~~~~l-----~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 401 (486)
...+. ..+| --||- .+-++.+.+ -++|.+|++++.++....+-.|...|+.. +-++.+.+.+
T Consensus 347 k~a~R-LALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~fF 424 (1001)
T KOG2040|consen 347 KEAYR-LALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHKPFF 424 (1001)
T ss_pred cHHHH-HHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhcccccc
Confidence 11110 0111 12221 111222222 23599999999999999999999999876 6788877777
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
-.+.+++... .+++.++..++++-+ . +-..+.+-+++ ...++++|+|.++..+.
T Consensus 425 DTLkI~~~~s----------------~~~~l~rA~~~~iNl---r-~~ed~tigvsl-DETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 425 DTLKIRCGCS----------------AEEVLDRAAKRQINL---R-LVEDGTIGVSL-DETVTEKDVDDLLWVFN 478 (1001)
T ss_pred ceEEEEecCc----------------HHHHHHHHHhhcCce---E-EeecCceEEee-cccccHHHHHHHHHHHc
Confidence 7777776542 234444444444311 1 11223456777 56888999999999886
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=82.04 Aligned_cols=305 Identities=14% Similarity=0.129 Sum_probs=160.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc----ccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG----RENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~----~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
++++.+++++|.+.+ ..++.+++|..+ +--..++.......+ |...++...+|+.+.+-.....++.+
T Consensus 73 e~r~l~a~llgv~~~-------~viv~gNSSL~l-M~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~ 144 (425)
T PF12897_consen 73 EARELFAELLGVPPE-------NVIVGGNSSLNL-MHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHF 144 (425)
T ss_dssp HHHHHHHHHHTS-GG-------GEEE-SS-HHHH-HHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHH-------HEEEeccchHHH-HHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhh
Confidence 456889999999986 556555555433 322233333222111 22346788899999999999999999
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHH-HHHhCceEEeecc
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDI-AKRYSIWVHVDAA 268 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i-~~~~g~~lhvD~a 268 (486)
|+ +.+.||.+++ -.|+|.+|+++.++.. +--+-++---+||+|..-. +++++++ +...++.+..|-|
T Consensus 145 Gi---emi~VpM~~d---GPDmD~Ve~LV~~D~s---vKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNA 215 (425)
T PF12897_consen 145 GI---EMIPVPMTED---GPDMDMVEELVAEDPS---VKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNA 215 (425)
T ss_dssp T----EEEEEEEETT---EE-HHHHHHHTHTSTT---EEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-T
T ss_pred Cc---EEEecCCCCC---CCCHHHHHHHHhcCCc---cceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecC
Confidence 99 9999999864 5799999999976542 1123445557899998844 4555555 3467999999999
Q ss_pred ccchhccCcc--ch--hhhc-----CCCCCCceeeccccccCCCCcceEEEeeCchH--HHHHhcCCcccccCccCCCCC
Q 038818 269 YAGSACICPE--FR--HFID-----GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA--LIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 269 ~g~~~~~~~~--~~--~~~~-----~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~ 337 (486)
|+...+..+. .. ..+. |-+.--.+..|..|.-+...|.+++....... +.+.+... -+.
T Consensus 216 Y~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~--tIg-------- 285 (425)
T PF12897_consen 216 YAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQ--TIG-------- 285 (425)
T ss_dssp TTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH---S---------
T ss_pred ceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCc--eeC--------
Confidence 9876653221 11 1111 21222255677899888777777777665422 22221110 010
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhc-hH-HHHHHHHHHHH--------HHHHHHHHHh-CCCCeEEecCCCe-eEEE
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFG-VA-NLRNFLRSHVR--------MAQLFQELVG-GDNRFEIVAPRNF-AVVC 405 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~-g~~~~~~~~~~--------~a~~l~~~L~-~~~~~~~~~~~~~-~~v~ 405 (486)
..-+......+.++ .+ |++++++++.+ .-+.|.+.|. .. ++--+..|.. ..|+
T Consensus 286 --------------pdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-~ia~Wt~P~GGYFIs 350 (425)
T PF12897_consen 286 --------------PDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-GIASWTKPKGGYFIS 350 (425)
T ss_dssp ----------------HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG-TSEEE---SBSS-EE
T ss_pred --------------ccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC-CeeEecCCCCceEEE
Confidence 11122222333332 34 66666665543 3445666676 43 4544555554 4677
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEe-eeeE-----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVS-HGMV-----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~-----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
|...+. ..+++.+...+.|+.... +..+ .....||++.+-| +.+|++..++.+.-++
T Consensus 351 ld~~~G---------------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P--~leel~~Am~~~~~cv 413 (425)
T PF12897_consen 351 LDVLDG---------------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYP--SLEELETAMDVFATCV 413 (425)
T ss_dssp EEESTT----------------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS---HHHHHHHHHHHHHHH
T ss_pred EecCCC---------------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCC--CHHHHHHHHHHHHHHH
Confidence 776642 256788888888985433 1111 1245799998644 6678999999988776
Q ss_pred H
Q 038818 480 D 480 (486)
Q Consensus 480 ~ 480 (486)
+
T Consensus 414 ~ 414 (425)
T PF12897_consen 414 K 414 (425)
T ss_dssp H
T ss_pred H
Confidence 4
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-07 Score=80.81 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcC-CchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQG-TTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSALQKA 188 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~-ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a 188 (486)
...+-.+.....-+|.|+..-. ..++.+ ..-++.-.++...|.+. |+ ..|+-.....-|-.|.
T Consensus 55 l~~isne~a~~~i~l~glhav~------nc~vvpl~tgmslslc~~s~r~kr---------pkakyiiw~ridqks~~ks 119 (432)
T KOG3843|consen 55 LACISNEFAKDAIHLAGLHAVA------NCFVVPLATGMSLSLCFLSLRHKR---------PKAKYIIWLRIDQKSCFKS 119 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh------ceeEEeccccccHHHHHHHHhhcC---------CcccEEEEEecchHHHHHH
Confidence 3445555566666777765321 222222 22244545555555431 22 2334455666677777
Q ss_pred HHHcCCCCCCeEEEe-cCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc---ccCCchHHHHHHHHhCceEE
Q 038818 189 AQIAGIDPKNFRAIK-TTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT---TVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 189 ~~~~G~g~~~v~~v~-~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G---~idpl~~I~~i~~~~g~~lh 264 (486)
.-..|+ +.+.|. +-+.+....|++++++.+++.- . -++.+.+.||..- .-|.+++|+.||..|+++-+
T Consensus 120 i~~agf---epiiie~i~d~d~l~tdleav~~~iee~g---~--dcilci~sttscfapr~pd~leaiaaica~~diphi 191 (432)
T KOG3843|consen 120 IIHAGF---EPIIIENILDGDELITDLEAVEAIIEELG---E--DCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHI 191 (432)
T ss_pred HHhcCC---CceeeeccccchHHHHhHHHHHHHHHHhC---C--ceEEEEeecccccCCCCCchHHHHHHHHHccCchhh
Confidence 777888 766664 3222346779999999888753 2 2344445444433 34889999999999999999
Q ss_pred eeccccchhccCccchhh---hcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 265 VDAAYAGSACICPEFRHF---IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~---~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
|.-|||.-- .+.-++ ...+.++|.++-+..|.|.+|.|..++..-+...++..-. .|.....
T Consensus 192 vnnayglqs---ee~i~~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~iak---~ypgras--------- 256 (432)
T KOG3843|consen 192 VNNAYGLQS---EECIHKIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAK---MYPGRAS--------- 256 (432)
T ss_pred hccccccch---HHHHHHHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHH---hCCCccc---------
Confidence 999997532 121111 1235689999999999999998766654322222221111 1211100
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
....+.+...+..+|..++.+...+..++--+++..|.+
T Consensus 257 ---------a~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~ 295 (432)
T KOG3843|consen 257 ---------ASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIK 295 (432)
T ss_pred ---------cCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112356677888889999998888888877777776644
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-07 Score=90.00 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC------chHHHHHHH
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT------HSALQKAAQ 190 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~------H~s~~~a~~ 190 (486)
.+.+.++.+.|.++ ++++++...|++.++..... +-.|++|.-. .+.+...++
T Consensus 51 ~v~~ll~~ltgAea---------A~VvNnnaAAv~L~l~~la~------------~~EvIvsRGelVeiGgsFRip~vm~ 109 (367)
T PF03841_consen 51 HVEELLCELTGAEA---------ALVVNNNAAAVLLALNTLAK------------GKEVIVSRGELVEIGGSFRIPDVMR 109 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc---------cccccccccccccccccccc------------ccccccccccccccccccccccccc
Confidence 35567888988864 46666655566555544321 1123334322 233556667
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc--cccc--CCchHHHHHHHHhCceEEee
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA--ITTV--DPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~--~G~i--dpl~~I~~i~~~~g~~lhvD 266 (486)
..|. .++.|-+.. +..+++.+++|.+++. ++.-.+.+|. .|.. -+++++++++++|++++++|
T Consensus 110 ~sGa---~lvEVGttN----~t~~~Dye~AI~e~Ta------~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~D 176 (367)
T PF03841_consen 110 QSGA---RLVEVGTTN----RTHLSDYEKAITENTA------ALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVD 176 (367)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHT--EEEE
T ss_pred cccc---ccccccccc----cccccccccccccccc------ccccccccccccccccccccHHHHHHHHhhcCCcEEEE
Confidence 7787 888876532 6788999999999885 4555554444 2322 47999999999999999999
Q ss_pred ccccchhcc----CccchhhhcCC-CCCCceeeccccccCCCCcceEEEeeCc
Q 038818 267 AAYAGSACI----CPEFRHFIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 267 ~a~g~~~~~----~~~~~~~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
.+-|...-+ .+.-......+ .++|.+++|+.|.+++|. +|+++-|.+
T Consensus 177 lgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk~ 228 (367)
T PF03841_consen 177 LGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKKE 228 (367)
T ss_dssp -TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEHH
T ss_pred CCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCHH
Confidence 877553211 11111111112 479999999999999996 677776654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00014 Score=69.63 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCC
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPK 197 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~ 197 (486)
+.+.+++.||.++... ..- ..+||.|+-.+|...... .+..++++...+-.+.+...+.|-+..
T Consensus 59 le~iyA~vfgaE~ALV-----Rpq-~vSGTHAi~~~Lfg~Lrp----------GD~ll~~tG~PYDTL~~VIG~~g~~~G 122 (403)
T PF06838_consen 59 LERIYADVFGAEDALV-----RPQ-FVSGTHAIALALFGVLRP----------GDELLSITGKPYDTLEEVIGIRGNGPG 122 (403)
T ss_dssp HHHHHHHHCT-SEEEE-----ETT-S-SHHHHHHHHHHHH--T----------T-EEEESSSS--CCHHHHHTSSSSSSS
T ss_pred HHHHHHHHhCchhhhh-----ccc-ccchHHHHHHHHHhcCCC----------CCeEEEcCCCchhhHHHHhCCCCCCCC
Confidence 3456799999876410 011 236788887777765542 334445677777778877755432111
Q ss_pred -------CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEee--cCCc--cccccCCchHHHHHHHHh--CceEE
Q 038818 198 -------NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCAT--VGTT--AITTVDPLGPLCDIAKRY--SIWVH 264 (486)
Q Consensus 198 -------~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~--~gtt--~~G~idpl~~I~~i~~~~--g~~lh 264 (486)
+...||..+ ++.+|.+.++++|++.++ +|.+. .|.+ ++-.++.|++++++.|+. ++++.
T Consensus 123 SL~e~Gi~Y~~v~L~~--dg~~D~~~i~~~~~~~tk------~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iif 194 (403)
T PF06838_consen 123 SLKEFGIKYREVPLTE--DGTIDWEAIKKALKPNTK------MVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIF 194 (403)
T ss_dssp STGGGT-EEEE--B-T--TSSB-HHHHHHHHHTTEE------EEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEE
T ss_pred ChHHhCceeEEEeecC--CCCcCHHHHHHhhccCce------EEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEE
Confidence 456788875 569999999999996553 34432 2322 334567888888888876 58999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH-hcCCcccccCccCCCCCccCCC
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA-LSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
||-|||-+.-..+. .. -+||.+..|.=|..++. ..+|..++-++++..++ .+..++-+..
T Consensus 195 VDNCYGEFvE~~EP-~~-----vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~------------ 256 (403)
T PF06838_consen 195 VDNCYGEFVETQEP-TE-----VGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGK------------ 256 (403)
T ss_dssp EE-TTTTTTSSS-G-GG-----GT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGG------------
T ss_pred EeCCcceeccccCc-cc-----cchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCcccc------------
Confidence 99999875432221 22 18999999999988844 35777777777665432 2223333322
Q ss_pred CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC---Cee-EEEEEeec
Q 038818 343 DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR---NFA-VVCFRVLP 410 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~~~-~v~f~~~~ 410 (486)
+++-.+...... ++ |.---..++.+..+-+......++++ |+++...+ ++- +-++.+..
T Consensus 257 ----e~G~t~~~~R~~--~Q--GlFlAP~vV~eAlKgaif~A~~fe~l-G~~v~P~~~~~R~DiIQai~l~~ 319 (403)
T PF06838_consen 257 ----EVGATLGTNRLM--FQ--GLFLAPHVVGEALKGAIFAAALFEKL-GFEVSPKPDDPRSDIIQAIELGS 319 (403)
T ss_dssp ----GSS--TTTHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHT-T-EEES-TTS--SSS-EEEE-SS
T ss_pred ----ccccCcchHHHH--Hh--HHhhchHHHHHHHHHHHHHHHHHHHc-CCcCCCCCCCCCCceEEEEECCC
Confidence 222222211110 00 11111334455566666677777777 89987532 333 33555543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00044 Score=63.47 Aligned_cols=344 Identities=14% Similarity=0.066 Sum_probs=189.6
Q ss_pred ceecCCCC-CHHHHHHHHHHhhcCCCcccc---cc---ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 77 FAYFPSSG-SIAGFLGEMLSSGFNVVGFNW---MS---SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 77 ~~~~~~~~-~~~~~~~~~l~~~~n~~~~~~---~~---~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
..|-+++. .+-+++-++-...+|-++... +. +.-+..+-......+.+|++.|+.+ .-.++.+|||..
T Consensus 9 vnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~-----~vlf~QGGGt~q 83 (370)
T KOG2790|consen 9 VNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNY-----KVLFLQGGGTGQ 83 (370)
T ss_pred eecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCce-----eEEEEeCCCccc
Confidence 33444443 344566666666666554322 22 3335566677889999999999986 234556777743
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCc-ccCHHHHHHHHHHHHHCC
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSF-TLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~-~~d~~~L~~~l~~~~~~g 228 (486)
. .|+..-... ...|..-+-|++..-+--+...+-++.-. +.+..+..+..-+ ..|.+.++.-. +.
T Consensus 84 F-aAv~lNL~g-----lK~g~~AdYiVTGsWS~KA~~EAkk~~~~---~~V~~~~k~y~ygkvPd~~~w~~~~--da--- 149 (370)
T KOG2790|consen 84 F-AAVPLNLIG-----LKHGRCADYVVTGSWSAKAAEEAKKYGTP---NIVIPKLKSYTYGKVPDPSTWELNP--DA--- 149 (370)
T ss_pred c-cccchhhhc-----cccCCccceEEeccccHHHHHHHHhhCCc---eEEeccccccccCcCCChhhcccCC--Cc---
Confidence 2 332211100 11222344565554344444555444333 4444443321111 34666665322 21
Q ss_pred CccEEEEeecCCcccccc-CCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcce
Q 038818 229 LIPLFLCATVGTTAITTV-DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCC 307 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~G~i-dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g 307 (486)
.+|-.+...|..|.- +++. +-.-+|..++.|-+.-. + +.. -++...+.|...++|..+ |.|..
T Consensus 150 ---~yvyyCaNETVHGVEf~~~P----~~~~~~~vlVaDmSSnf--l-Srp-----vDvsk~gvi~aGAQKN~G-~aG~T 213 (370)
T KOG2790|consen 150 ---SYVYYCANETVHGVEFDFIP----VNDPKGAVLVADMSSNF--L-SRP-----VDVSKFGVIFAGAQKNVG-PAGVT 213 (370)
T ss_pred ---cEEEEecCceeeceecCCCC----CCCCCCceEEEecccch--h-cCC-----ccchhcceEEeccccccC-ccccE
Confidence 278889999999975 4443 22345788888854311 1 111 123466788999999876 66778
Q ss_pred EEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHH
Q 038818 308 CLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~ 385 (486)
++++|+.- +.+.....|.-+.-.. .. .+.++-.+-+ |....+-+.++.+ ...|+..+.+...+.++.+.+
T Consensus 214 vvivr~dl-lg~~~~~tP~v~dyk~-----~~--~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd 285 (370)
T KOG2790|consen 214 VVIVRKDL-LGNALDITPSVLDYKI-----MD--KNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYD 285 (370)
T ss_pred EEEEehhh-hcccccCCccccceee-----ec--cccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 88888753 2223233332111000 00 0001111111 2222333344443 335677788888899999999
Q ss_pred HHhCCCCeEEec-CCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCC
Q 038818 386 LVGGDNRFEIVA-PRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGAT 461 (486)
Q Consensus 386 ~L~~~~~~~~~~-~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~ 461 (486)
.|.+..||-... +|. .-.|+|++.+ +++..++.+...+++-+.+.+ ++..+.+|.|+-|
T Consensus 286 ~iD~s~gfy~cpVe~~~RS~MNV~Fri~~--------------d~Le~eFLkeA~~~~mv~LKG--hRSVGGiRASlYN- 348 (370)
T KOG2790|consen 286 AIDNSNGFYRCPVEPSVRSRMNVPFRIEK--------------DELEAEFLKEAAKEHMVQLKG--HRSVGGIRASLYN- 348 (370)
T ss_pred HHHhcCCeEEcccchhhhhhcccceeecc--------------hHHHHHHHHHHHHhhhhcccc--ccccccchhhhhc-
Confidence 999887886542 332 2458999985 345556666555555432222 3445679999966
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 038818 462 LTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~ 480 (486)
..+-+++.++++-+++..+
T Consensus 349 Aisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 349 AISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 5566799999999888764
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0029 Score=58.63 Aligned_cols=301 Identities=10% Similarity=0.036 Sum_probs=161.2
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc------CCCCCC---eEEEecCC--C
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA------GIDPKN---FRAIKTTK--S 207 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~------G~g~~~---v~~v~~d~--~ 207 (486)
..+|+++|||||-.||..||+..- .+++|......|--+...+++. |-+..+ |+.-|+.. .
T Consensus 104 vc~F~NSGSEANDLALRLAR~ftk--------hqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyr 175 (452)
T KOG1403|consen 104 VCFFVNSGSEANDLALRLARNFTK--------HQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYR 175 (452)
T ss_pred EEEEecCCchhhHHHHHHHHhhcc--------cCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccc
Confidence 679999999999999999998631 4556665655554333333322 222222 33333321 0
Q ss_pred CC-----------cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEEeeccccch
Q 038818 208 SS-----------FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 208 ~~-----------~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+. +..-.+.+++.+++...+|......++.+-.+--|.|-| ++++++..+.+|-.++.|..+-|+
T Consensus 176 GK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGF 255 (452)
T KOG1403|consen 176 GKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGF 255 (452)
T ss_pred cccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcc
Confidence 11 123346788888887777766555566655565677754 678888899999999999998775
Q ss_pred hccCccc-hhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACICPEF-RHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~~~~~-~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
......+ ....-+. --|.+++ .|-++-..+.+.+.++.+ +.++|.. .-.|...- ++.
T Consensus 256 GRvG~hyWafq~y~f-iPDIVtm--gKpmGNGhPVa~Vattke--IA~Af~atgv~YFNTy----------------GGn 314 (452)
T KOG1403|consen 256 GRVGSHYWAFQTYNF-IPDIVTM--GKPMGNGHPVAAVATTKE--IAQAFHATGVEYFNTY----------------GGN 314 (452)
T ss_pred cccchhhhhhhhhcc-ccchhee--cccCCCCCeeeEEeccHH--HHHHhccccceehhcc----------------CCC
Confidence 4332211 1111111 3455554 455554555666666554 2345543 23444221 121
Q ss_pred CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEecCCCee--EEEEEeecCC-CCCCCCCCccchHH
Q 038818 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIVAPRNFA--VVCFRVLPSA-SGLGDGKANEGANE 426 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~~~~~~--~v~f~~~~~~-~~~~~~~~~~~~~~ 426 (486)
+.+-....+.|+....+. +.++..++.++|...|.+.. ..++++.-+.. .+.+.+..+. -|.++ .+
T Consensus 315 PVsCAv~laVm~v~e~E~---Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~-------tk 384 (452)
T KOG1403|consen 315 PVSCAVGLAVMRVCEDEN---LQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPD-------TK 384 (452)
T ss_pred chhHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCc-------HH
Confidence 222222233444444444 44555666667766665432 35666554421 1222222221 12222 33
Q ss_pred HHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+..+..+|.+...+.++... .+++.|++-.- --.+++++++++..|++++.
T Consensus 385 ~A~~~v~rlke~y~VLlsaDG-Ph~NilKiKPP-mCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 385 EAHWVVNRLKELYRVLLSADG-PHRNILKIKPP-MCFNEENADEFVLGLDEILT 436 (452)
T ss_pred HHHHHHHHHHHhhhEEEecCC-CCCceeecCCC-cccChhhHHHHHHHHHHHHH
Confidence 445666677666544444321 22456665431 11256688888888888764
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0071 Score=56.52 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=161.2
Q ss_pred cceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHH
Q 038818 138 GGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESL 217 (486)
Q Consensus 138 ~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L 217 (486)
..|+=+-|||-|+..+..-.-..+ .+..||+|.++.......+...|+- .+...+.=..++-.+|.+.+
T Consensus 100 v~~vQslsGTGAl~~~A~Fl~~~~---------~~~~VY~SnPTW~nH~~if~~aGf~--tv~~Y~yWd~~~k~~d~e~~ 168 (410)
T KOG1412|consen 100 VFGVQSLSGTGALRIAADFLATFY---------NKNTVYVSNPTWENHHAIFEKAGFT--TVATYPYWDAENKCVDLEGF 168 (410)
T ss_pred ccceeeccccchhhhhHHHHHHhc---------ccceeEecCCchhHHHHHHHHcCCc--eeeeeeeecCCCceecHHHH
Confidence 356777788888766544332221 4566999999988888888888842 33333332123458898888
Q ss_pred HHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEEeeccccchhccCcc---c--hhhhcCCCC
Q 038818 218 QAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGSACICPE---F--RHFIDGIEG 288 (486)
Q Consensus 218 ~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~---~--~~~~~~~~~ 288 (486)
-..|+..... -++|.-.+..|||| +|| ..+|+++.++.+..-..|-||-|++-..+. + +.... .+
T Consensus 169 Lsdl~~APe~---si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~--~g 242 (410)
T KOG1412|consen 169 LSDLESAPEG---SIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVE--QG 242 (410)
T ss_pred HHHHhhCCCC---cEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHh--cC
Confidence 8888765431 22333334488887 566 568999999999999999999876643322 1 11111 12
Q ss_pred C-CceeeccccccC--CCC-cceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCch-HHHH--HH
Q 038818 289 A-DSFSLNAHKWFF--TTL-DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL-KLWL--VL 361 (486)
Q Consensus 289 a-Dsi~~~~hK~l~--~p~-~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l-~~~~--~l 361 (486)
. =+++-++.|.++ .+. ||=-+.++++.......+...--+... ++-.....++.. ++.. .+
T Consensus 243 ~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~------------~SNPPAyGArIV~kvL~tP~l 310 (410)
T KOG1412|consen 243 FELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSN------------WSNPPAYGARIVHKVLSTPEL 310 (410)
T ss_pred CeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhc------------cCCCcchhhHHHHHHhcCHHH
Confidence 2 256677788776 333 333345566544322211111011100 000000001110 0000 11
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhCC--CC-eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc
Q 038818 362 RSFGVANLRNFLRSHVRMAQLFQELVGGD--NR-FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS 438 (486)
Q Consensus 362 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--~~-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 438 (486)
+.--...++.+..+..+++..|++.|..+ || +.=+ -.+.++++|.-..+ .-.+.|.++
T Consensus 311 re~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI-~~QiGMFSyTGLtp------------------~qV~~li~~ 371 (410)
T KOG1412|consen 311 REQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHI-TQQIGMFSYTGLTP------------------AQVDHLIEN 371 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-HhhccceeecCCCH------------------HHHHHHHHh
Confidence 21223456777788889999999999775 22 1100 13456777754332 224556666
Q ss_pred CcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 439 GQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 439 g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
..+++... =|+++...++ ..+|++.++|.+.++.+-
T Consensus 372 h~vyLl~~-------GRInisGLN~--~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 372 HKVYLLSD-------GRINISGLNM--KNVEYVAKAIDETVRAIK 407 (410)
T ss_pred ceEEEecC-------CcEeeecccc--ccHHHHHHHHHHHHHhhc
Confidence 66555432 1577754433 369999999999887664
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.037 Score=52.83 Aligned_cols=221 Identities=12% Similarity=0.065 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHCCCccEEEEeecCCcccc----ccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCC-C
Q 038818 213 TPESLQAAIDLDIQAGLIPLFLCATVGTTAIT----TVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI-E 287 (486)
Q Consensus 213 d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G----~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~-~ 287 (486)
.++.+|++|.+-.++......+++.-..+.-| +-+=+..+.+||++||+-++||+++.|+..-..-|.+---.+ .
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~ 333 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS 333 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence 56778888887765444444555554444444 345589999999999999999999866543222222211122 2
Q ss_pred CCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchH
Q 038818 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVA 367 (486)
Q Consensus 288 ~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~ 367 (486)
-.|.+|++ -|+.. .| ++ .+++ |....+|-. +..-+|-++..+-+-...+.+-.+
T Consensus 334 PpD~vTFS-KK~q~----gG-ff-h~~~-----frpn~pYri--------------fNTWmGdP~k~lll~~vv~~I~~~ 387 (484)
T KOG1405|consen 334 PPDVVTFS-KKFQT----GG-FF-HDEE-----FRPNEPYRI--------------FNTWMGDPSKNLLLEEVVQEIKRE 387 (484)
T ss_pred Cccceehh-hhhhc----Cc-cc-cCcc-----cCCCchHHH--------------hhhhcCChHHHHHHHHHHHHHhHH
Confidence 57888775 24332 23 22 2221 122222211 111123233333333334433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEE
Q 038818 368 NLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYV 443 (486)
Q Consensus 368 g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 443 (486)
.+++++.....+|...|.+ .|+.---..-....+.+.+.. .....++...+.-+|+. +
T Consensus 388 ---~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps--------------~~~Rdk~i~~~~~nGv~-~ 449 (484)
T KOG1405|consen 388 ---DLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPS--------------GSIRDKLILIARLNGVN-L 449 (484)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCC--------------hHHHHHHHHHHHHcCce-e
Confidence 4556666677777777654 343210001123344444433 34455677777777863 3
Q ss_pred eeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 444 SHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 444 ~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++. |...+|+-.+ ..-++.+.+-+++.++++++.
T Consensus 450 GGC---g~~siRfRPs-Lvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 450 GGC---GDKSIRFRPS-LVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred ccc---ccceeeeccc-eeehhhhHHHHHHHHHHHhcc
Confidence 332 3345676553 344667999999999988764
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.018 Score=53.60 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=94.9
Q ss_pred HHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCC--
Q 038818 120 DWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPK-- 197 (486)
Q Consensus 120 ~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~-- 197 (486)
+-.++.||.+.... .--+. +||.|+-.||-...+. .+-.+++....+-.+.....+-|-|..
T Consensus 72 ~vyA~vf~aE~a~V-----Rpq~i-sGTHAI~~aLfg~LRp----------gDell~i~G~PYDTLeevIG~rg~~~gSL 135 (416)
T COG4100 72 RVYAQVFGAEAALV-----RPQII-SGTHAIACALFGILRP----------GDELLYITGSPYDTLEEVIGLRGEGQGSL 135 (416)
T ss_pred HHHHHHhcccccee-----eeeee-cchhHHHHHHHhccCC----------CCeEEEecCCcchhHHHHhccCCCCcccH
Confidence 34788888876531 12233 4577776665544331 334455666666666665544332111
Q ss_pred -----CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEe--ecC--CccccccCCchHHHHHHHHh--CceEEee
Q 038818 198 -----NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA--TVG--TTAITTVDPLGPLCDIAKRY--SIWVHVD 266 (486)
Q Consensus 198 -----~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~--~~g--tt~~G~idpl~~I~~i~~~~--g~~lhvD 266 (486)
.-..||... +|.+|.+.++..+++.++ +|.. +.| .-++-.+++|+++..+.|+- ++.+.||
T Consensus 136 ~dfgi~Y~~v~Lt~--~gkiD~~~v~~~i~~~tk------li~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVD 207 (416)
T COG4100 136 KDFGIKYKAVPLTA--DGKIDIQAVKTAISDRTK------LIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVD 207 (416)
T ss_pred HHhCcceeeccccc--CCcccHHHHHHhcCccce------EEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEe
Confidence 345667664 569999999999998765 2222 222 23445678889999998886 5888999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccC
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF 301 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~ 301 (486)
-|||-+.--.. ..+ -++|.+..|.-|.-+
T Consensus 208 NCYGEFvE~~E-Pt~-----vGaDliAGSLIKNpG 236 (416)
T COG4100 208 NCYGEFVEEKE-PTH-----VGADLIAGSLIKNPG 236 (416)
T ss_pred ccchhhhhccC-ccc-----cchhhhccceeeCCC
Confidence 99987542211 111 179999998888655
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.22 Score=47.92 Aligned_cols=294 Identities=14% Similarity=0.058 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH-HH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK-AA 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~-a~ 189 (486)
..+||+++ +.|-++.|=-... .--++|.+|+|+-. .|+..|.... .....+...|+ +...+|+..+ ..
T Consensus 45 s~eL~~~I-r~LH~~VGNAvt~----gr~IV~GtGsTQL~-~AalyALSp~----~~~~~~p~~VV-a~aPYY~~Y~~qt 113 (363)
T PF04864_consen 45 SPELERQI-RRLHRVVGNAVTD----GRYIVFGTGSTQLF-NAALYALSPN----ASPSSSPASVV-AAAPYYSSYPEQT 113 (363)
T ss_dssp -HHHHHHH-HHHHHHH-SB--T----TSEEEEECHHHHHH-HHHHHHHCHH----T-TTSSSEEEE-E-SS--CHHHHHC
T ss_pred cHHHHHHH-HHHHHHhcccccc----CcEEEEcCCHHHHH-HHHHHhcCCC----CCCCCCCceeE-ecCCCccchHHHH
Confidence 35677654 5556666632110 01356666655544 4444433321 00011334444 5556666554 44
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
.++.- ....+.-|.. .+. ..+ ...+++=++|.|+||.|.+.. .+++.-+..++-|-||
T Consensus 114 ~~f~s---~~y~w~Gda~-~~~----------~~~---~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AY 171 (363)
T PF04864_consen 114 DFFDS---RLYKWAGDAS-NFK----------NSD---NPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAY 171 (363)
T ss_dssp CCT-B---TTEEEEEECC-CGT----------T-S----CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT
T ss_pred Hhccc---cCccccccHH-hhc----------cCC---CCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeee
Confidence 44433 4455554432 121 111 123677889999999997731 1224455677899888
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
-...+ .+. ..-..-|.+-++..|.=+ +..-.|..++||++..++.. .|+... ++..
T Consensus 172 YWPhy-----TpI-~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~----~y~~ln-------------TiGv 228 (363)
T PF04864_consen 172 YWPHY-----TPI-TAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMT----KYMELN-------------TIGV 228 (363)
T ss_dssp -STTT-----S----S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHH----HHHHHH-------------CSS-
T ss_pred ecccc-----ccc-CCCCCCceEEEEEecccCccccccceeeecCHHHHHHHH----HHHHHh-------------cccC
Confidence 55432 111 111256889999999766 55568999999998765543 344321 1222
Q ss_pred CCC--CCchHHHHHHHH-hchH-----HHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-C------------CeeEEEEE
Q 038818 349 SRR--FRALKLWLVLRS-FGVA-----NLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-R------------NFAVVCFR 407 (486)
Q Consensus 349 sr~--~~~l~~~~~l~~-~g~~-----g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~------------~~~~v~f~ 407 (486)
||- .+++++.-++.. ++.+ -+.--.+.+.+.-+.|++.+.+-..|.+..- | ......++
T Consensus 229 S~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlk 308 (363)
T PF04864_consen 229 SRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLK 308 (363)
T ss_dssp -HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEe
Confidence 221 244444433322 2221 1111223344455677888877667776421 1 11122334
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+..++ ++.+ .+.|.+.|++--++..+. +..++|+|+.. +++|.|.+++.|..+
T Consensus 309 Ce~ee------------d~DC---~~~l~~~~I~tr~G~~fga~~ryVRlSml~---~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 309 CEREE------------DEDC---YAVLREAKIITRSGVLFGADSRYVRLSMLK---RDDDFDQLLERLSKL 362 (363)
T ss_dssp ESSCG------------GSSH---HHHHHCTTEEEEEGGGGTS-TTEEEEESSS----HHHHHHHHHHHHCC
T ss_pred cCCcc------------cccH---HHHHHhCCcccCCCCccCCCCCeEEEeccC---CHHHHHHHHHHHHhh
Confidence 43221 1112 333334455333333222 35689999843 666999999988754
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.21 Score=47.71 Aligned_cols=259 Identities=13% Similarity=0.152 Sum_probs=137.9
Q ss_pred CCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc---cC
Q 038818 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT---VD 247 (486)
Q Consensus 171 ~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~---id 247 (486)
+...||++.++.-...+.....|+ .+..+..-...+..+|.+.+-+.|.+... | -+++.=-+.+|+||. .+
T Consensus 145 ~~~~I~ip~PTWgNh~~if~~ag~---~~~~yrYyd~~t~gld~~g~ledl~~~p~-g--s~ilLhaCaHNPTGvDPt~e 218 (427)
T KOG1411|consen 145 PSRDIYIPDPTWGNHKNIFKDAGL---PVKFYRYYDPKTRGLDFKGMLEDLGEAPE-G--SIILLHACAHNPTGVDPTKE 218 (427)
T ss_pred cccceeecCCcccccCccccccCc---ceeeeeeccccccccchHHHHHHHhcCCC-C--cEEEeehhhcCCCCCCccHH
Confidence 566789998886666666677788 55444332223567888887776665432 2 133334456788873 23
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCcc-----chhhhcCCCCCC-ceeeccccccCCC-CcceE--EEeeCchHHH
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPE-----FRHFIDGIEGAD-SFSLNAHKWFFTT-LDCCC--LWVKNPNALI 318 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~-----~~~~~~~~~~aD-si~~~~hK~l~~p-~~~g~--~~~~~~~~~~ 318 (486)
..++|.++.++.+..-..|.||-|+...... .|..+. .+-+ .++-+.-|.++.- --.|. +++++.+...
T Consensus 219 qw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~--~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~ 296 (427)
T KOG1411|consen 219 QWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE--DGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAK 296 (427)
T ss_pred HHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH--cCCceEeehhhhhhcchhhhccceeEEEecCHHHHH
Confidence 4788999999999999999999886543211 111111 0111 3455566766521 11233 4555554322
Q ss_pred HHhc-----CCcccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 319 KALS-----TNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 319 ~~~~-----~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
+.-+ ..|-|...+ +.++|=.. .+. -..|+.-...-...+.++.+.+++.|.+.|++. +
T Consensus 297 rV~SQlk~liRpmYSnPP--------------~hGArIv~~Il~-d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~-g 360 (427)
T KOG1411|consen 297 RVESQLKILIRPMYSNPP--------------LHGARIVATILS-DPDLKNQWLGEVKGMADRIISMRQQLFDALEKE-G 360 (427)
T ss_pred HHHHHHHHHhcccccCCC--------------ccchhhhhhccC-ChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcC-C
Confidence 2111 122222211 11111111 010 001111112345667888899999999999875 2
Q ss_pred eEE-e--cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 038818 393 FEI-V--APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 393 ~~~-~--~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did 469 (486)
-.. + -..+-+++||.-..+ +-.+.|..+..++++.. -|+|+... +...++
T Consensus 361 s~~~W~hI~~QIGMF~fTgl~p------------------eQv~~l~ke~~iYmT~d-------GRiS~aG~--ss~nV~ 413 (427)
T KOG1411|consen 361 SPGNWSHITKQIGMFCFTGLNP------------------EQVDWLTKEYHIYLTKD-------GRISMAGL--SSSNVP 413 (427)
T ss_pred CCccHHHHHHhhheeeecCCCH------------------HHHHHHHhhheeeeccC-------ceEeeccc--cccCCc
Confidence 211 1 023567889865532 22334444444454431 36887543 333688
Q ss_pred HHHHHHHHHHH
Q 038818 470 AAWKVVQEKLD 480 (486)
Q Consensus 470 ~~i~~l~~~~~ 480 (486)
++.++|..+..
T Consensus 414 yLa~aih~vtk 424 (427)
T KOG1411|consen 414 YLADAIHAVTK 424 (427)
T ss_pred ccchhhHhHhc
Confidence 88888776543
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.29 Score=42.08 Aligned_cols=63 Identities=6% Similarity=0.004 Sum_probs=45.3
Q ss_pred cccChhhHHHHHHHHHHHHHHcC--CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 105 WMSSPAATELENIVMDWLGEMLK--LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g--~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
|....+..++.+.+.+|+.+.+| .+.. ...+++|+|++.++..++.+..+ +++.|+++...+
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~-----pd~Ivvt~Ga~~al~~l~~~l~d-----------pGD~VlVp~P~Y 151 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFD-----ADMIVLSAGATAANEIIMFCIAD-----------PGDAFLVPTPYY 151 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccc-----hhheEEcCCHHHHHHHHHHHHcC-----------CCCEEEEeCCCC
Confidence 33334567899999999999988 3221 12789999999988777666654 677788887665
Q ss_pred h
Q 038818 183 S 183 (486)
Q Consensus 183 ~ 183 (486)
.
T Consensus 152 ~ 152 (153)
T PLN02994 152 A 152 (153)
T ss_pred C
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 486 | ||||
| 3rbf_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 1e-118 | ||
| 3rch_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 1e-117 | ||
| 1js3_A | 486 | Crystal Structure Of Dopa Decarboxylase In Complex | 1e-112 | ||
| 4e1o_A | 481 | Human Histidine Decarboxylase Complex With Histidin | 1e-108 | ||
| 3k40_A | 475 | Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl | 1e-107 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 2e-33 | ||
| 2okj_A | 504 | The X-Ray Crystal Structure Of The 67kda Isoform Of | 1e-32 | ||
| 2jis_A | 515 | Human Cysteine Sulfinic Acid Decarboxylase (Csad) I | 2e-30 | ||
| 2okk_A | 497 | The X-Ray Crystal Structure Of The 65kda Isoform Of | 5e-30 | ||
| 2qma_A | 497 | Crystal Structure Of Glutamate Decarboxylase Domain | 1e-24 | ||
| 3f9t_A | 397 | Crystal Structure Of L-tyrosine Decarboxylase Mfna | 9e-04 |
| >pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480 | Back alignment and structure |
|
| >pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480 | Back alignment and structure |
|
| >pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486 | Back alignment and structure |
|
| >pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481 | Back alignment and structure |
|
| >pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
| >pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504 | Back alignment and structure |
|
| >pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515 | Back alignment and structure |
|
| >pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497 | Back alignment and structure |
|
| >pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497 | Back alignment and structure |
|
| >pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 486 | |||
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 0.0 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 0.0 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 0.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 0.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 0.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 0.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-44 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 2e-42 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 4e-42 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 2e-33 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 4e-32 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 2e-23 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 2e-10 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 4e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 6e-05 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 2e-04 |
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 639 bits (1651), Expect = 0.0
Identities = 202/496 (40%), Positives = 299/496 (60%), Gaps = 28/496 (5%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ +FRR+G ++D++ADY +E V V+PGYLR +P +AP P+ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP++FL +G GGGVIQG+ EA L L AAR +++ + + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ +AI + F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGV---KLKAIPSD--GKFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD 290
P F+ AT+GTT+ + D L + I IW+HVDAAYAGSA ICPEFRH ++G+E AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350
SF+ N HKW DC +WVK L A +P +L++ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410
RFR+LK+W V R +GV L+ ++R HV+++ F+ V D RFE+ A +VCFR+
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470
S + LN LLE IN++ ++++ + G + +RFA+ + E HV
Sbjct: 416 S-------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL 462
Query: 471 AWKVVQEKLDGILATS 486
AW+ ++ +LA
Sbjct: 463 AWEHIRGLAAELLAAE 478
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 632 bits (1631), Expect = 0.0
Identities = 191/494 (38%), Positives = 294/494 (59%), Gaps = 31/494 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ EF+ ++DFIA+Y ++ + VL +V+PGYL+ +P++AP PE + ++QD+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SP + AYFP++ S + +MLS +GF W++SPA TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 121 WLGEMLKLPKSFLFS--GTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP FL G GGGVIQGT E+ L L A+ + L E+ + +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A + G+ R++++ + + +L+ AI+ D+ GLI
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLGGVK---LRSVQS---ENHRMRGAALEKAIEQDVAEGLI 234
Query: 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD 290
P + T+GTT D L + ++++W+HVDAAYAGSA ICPE+RH + GIE AD
Sbjct: 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD 294
Query: 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350
SF+ N HKW DC +W+K+P+ ++ A + +P +L++ S DY+ WQI L R
Sbjct: 295 SFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGR 352
Query: 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410
RFRALKLW VLR +GV NL+ +R H A+ F +L D+RFE+ A N +VCFR+
Sbjct: 353 RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKG 412
Query: 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470
S NE N LL+ IN G +++ + +YF+R A+ + T+ +
Sbjct: 413 S-------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEY 459
Query: 471 AWKVVQEKLDGILA 484
+WK V D +
Sbjct: 460 SWKEVSAAADEMEQ 473
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 631 bits (1630), Expect = 0.0
Identities = 201/495 (40%), Positives = 287/495 (57%), Gaps = 31/495 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M+ EE+R +G ++D+I Y V + V V+PGYLR +LPESAP +P+ ++I D+
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+ HWQSP+ AY+P+ S LG+ML+ N +GF W SSPA TELE VMD
Sbjct: 66 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMD 125
Query: 121 WLGEMLKLPKSFLF---SGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN-------- 169
WL +ML LP+ FL S GGGV+Q T E+ L L AAR + E+
Sbjct: 126 WLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL 185
Query: 170 ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229
+RLV Y SDQ HS+++KA I+ + + + +F+L E+LQ AI+ D Q GL
Sbjct: 186 NARLVAYASDQAHSSVEKAGLISLV---KMKFLPV--DDNFSLRGEALQKAIEEDKQRGL 240
Query: 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGA 289
+P+F+CAT+GTT + D L L I R +W+H+DAAYAG+A +CPEFR F+ GIE A
Sbjct: 241 VPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYA 300
Query: 290 DSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349
DSF+ N KW DC WVK+ L + S NP +LR+ ++S D+ WQI LS
Sbjct: 301 DSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQIPLS 358
Query: 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVL 409
RRFR++KLW V+RSFGV NL+ +R MA+ F+ LV D FEI A R+ +V FR+
Sbjct: 359 RRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLK 418
Query: 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469
N L +L+ I +G+L++ + IRF V + T ++
Sbjct: 419 GP-------------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDIL 465
Query: 470 AAWKVVQEKLDGILA 484
W ++++ IL+
Sbjct: 466 RDWNLIRDAATLILS 480
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 602 bits (1555), Expect = 0.0
Identities = 111/489 (22%), Positives = 193/489 (39%), Gaps = 21/489 (4%)
Query: 2 DSEEFRRQGHMIIDFIADYYRDVEK--YPVLSQVEPGYLRKRLPE---SAPYNPEPIETI 56
E+ + ++D + +Y R VL P L + + +PE +E I
Sbjct: 17 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQI 76
Query: 57 LQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELEN 116
L D + + G+ P +F + I G GE L+S N F + +P +E
Sbjct: 77 LVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQ 135
Query: 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI---GRENISRL 173
I + + E++ S G G+ + + ++ AAR + E+ G + +L
Sbjct: 136 ITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKL 190
Query: 174 VVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLF 233
V++ S+Q+H +++KA G N IK + P +A I Q G +P +
Sbjct: 191 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFY 248
Query: 234 LCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFS 293
+ AT GTT DP+ + DI ++Y++W+HVDAA+ G + + RH ++GIE A+S +
Sbjct: 249 VNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVT 308
Query: 294 LNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353
N HK L C + VK L +L D D I R
Sbjct: 309 WNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVD 368
Query: 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--APRNFAVVCFRVLPS 411
K WL+ ++ G N + + +A+ + FE+V VCF +P
Sbjct: 369 IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ 428
Query: 412 ASGLGDGKA--NEGANELNRKLLESINASGQLYVSHGMVA-GIYFIRFAVGATLTEDRHV 468
+ E +++ K+ + SG V + F R + +
Sbjct: 429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDI 488
Query: 469 IAAWKVVQE 477
+ ++
Sbjct: 489 DFLIEEIER 497
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 589 bits (1521), Expect = 0.0
Identities = 100/493 (20%), Positives = 198/493 (40%), Gaps = 34/493 (6%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPE-SAPYNPEPIETILQD 59
+ S EF + + V S ++P L + P+++++ D
Sbjct: 29 LGSAEFASVMSHTTSAMKSVFEQVNA--PYSGMDPKALEDAINAVDLDNKNAPLKSVIDD 86
Query: 60 VQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVM 119
V + + Q P A+ + + E + + N +W + +AT +E V+
Sbjct: 87 VAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVV 146
Query: 120 DWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI--------- 170
+WL + L + G+ ++ L ARD I +++ +I
Sbjct: 147 NWLCDKYDLSE------KADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYA 200
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+L + S ++H +QK+A G+ K + + T+ L I GLI
Sbjct: 201 DKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLI 258
Query: 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD 290
P + T GTT +D L + D+A ++ +W+HVD AY G A I + + G+E A
Sbjct: 259 PFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERAH 317
Query: 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350
S S++ HK F+ T+ C L V + + K L + ++L + + + + D I ++
Sbjct: 318 SISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDE---LPNLVDKSIATTK 373
Query: 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410
RF ALK+++ +++ G L + + +++ +++FE++A + + V FR
Sbjct: 374 RFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATH 433
Query: 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470
+ELN+ L G + +V G ++F + +
Sbjct: 434 E---------TADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFES 484
Query: 471 AWKVVQEKLDGIL 483
+ ++
Sbjct: 485 LLSKINMLAVELV 497
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 588 bits (1517), Expect = 0.0
Identities = 105/481 (21%), Positives = 189/481 (39%), Gaps = 18/481 (3%)
Query: 4 EEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQH 63
R +++D V + V EP L++ L E + IL+ +
Sbjct: 41 ALLRAVFGVVVDEAIQKGTSVSQ-KVCEWKEPEELKQLLDLELRSQGESQKQILERCRAV 99
Query: 64 IVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLG 123
I + P +F S G +++ N + + +P +E V+ L
Sbjct: 100 IRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLR 158
Query: 124 EMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI---GRENISRLVVYGSDQ 180
++ +G G+ + + + AR Q + G + L ++ S +
Sbjct: 159 ALVGWS-------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKE 211
Query: 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240
H ++QK A G+ + R +K + PE L+ I + G +P + AT GT
Sbjct: 212 CHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGT 269
Query: 241 TAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300
T + DPL + D+ +R+ +W+HVDAA+ GS + RH +DGI+ ADS + N HK
Sbjct: 270 TVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLL 329
Query: 301 FTTLDCCCLWVKNP-NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWL 359
L C L +++ N L + + +L + +D D + RR LKLWL
Sbjct: 330 AAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWL 389
Query: 360 VLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGK 419
+ ++ G L + +A+ E + FE+V F VCF +P +
Sbjct: 390 MWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQES 449
Query: 420 A--NEGANELNRKLLESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHVIAAWKVVQ 476
+E +++ L E + G + + + F R V + + ++
Sbjct: 450 PDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELE 509
Query: 477 E 477
Sbjct: 510 R 510
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 3e-44
Identities = 72/409 (17%), Positives = 124/409 (30%), Gaps = 39/409 (9%)
Query: 6 FRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIV 65
+ Q D D+ + SQ++P R P P IL ++
Sbjct: 36 IQSQPPARRDPTMDWLASLR-----SQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGA 90
Query: 66 PGITHWQSPYYFAY-FPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGE 124
W+ Y + FL E+ + + P+ + E V+
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 125 MLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184
ML + G V G T E++L + RD G I+ H+A
Sbjct: 151 MLGGDAAG--GTVCGTVTSGGT-ESLLLAMKTYRDWARATKG---ITAPEAVVPVSAHAA 204
Query: 185 LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244
KAAQ GI + +++ AI + + + +
Sbjct: 205 FDKAAQYFGIKL---VRTPLDAD--YRADVAAMREAITPN------TVVVAGSAPGYPHG 253
Query: 245 TVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPE-----FRHFIDGIEGADSFSLNAHKW 299
VDP+ + +A + I HVDA G E F +EG S S + HK+
Sbjct: 254 VVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKY 313
Query: 300 FFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLW 358
+ + + P+ L ++ Y SR + W
Sbjct: 314 GYGAKGTSVILYRRPDLLHYQYFIAADWPGG---------LYFSPTFAGSRPGALSATAW 364
Query: 359 LVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR 407
+ S G + R ++ A + V +I+ + V+
Sbjct: 365 AAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVA 412
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 2e-42
Identities = 62/381 (16%), Positives = 129/381 (33%), Gaps = 45/381 (11%)
Query: 39 RKRLPESAPYNPEPIETILQDVQQ-HIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSG 97
+LP N P + +++++ + + + T W+ G L +
Sbjct: 35 FPQLPS----NGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEK 90
Query: 98 FNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAA 156
+ V + PA ++E+ V+ + M P +G G GT E++L +
Sbjct: 91 YCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD---TGCGTTTSGGT--ESLLLACLS 145
Query: 157 ARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPES 216
A+ L+ G I+ + H+ KAA G+ R ++ ++ + +
Sbjct: 146 AKMYALHHRG---ITEPEIIAPVTAHAGFDKAAYYFGMKL---RHVELDPTT-YQVDLGK 198
Query: 217 LQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG----- 271
++ I+ + + L + D + L IA++Y + +HVD+
Sbjct: 199 VKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSF 252
Query: 272 -SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330
+ G S S + HK+ F + +N + + NP +
Sbjct: 253 MEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWT-- 310
Query: 331 KASDSKQVVDYKDWQITL--SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELV 387
TL SR + W + + G + V A F++ +
Sbjct: 311 ---------GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYI 361
Query: 388 G-GDNRFEIVAPRNFAVVCFR 407
+I+ ++V+ F
Sbjct: 362 QENIPDLDIMGNPRYSVISFS 382
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-42
Identities = 65/490 (13%), Positives = 148/490 (30%), Gaps = 81/490 (16%)
Query: 3 SEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQ 62
+ ++G ++++ DV + +++PE+ + E I+ L+ +
Sbjct: 31 PKNMEKRGELVLNEYLKEIEDVFNH------------RKIPEN-GIDDEKIKLFLKFLSM 77
Query: 63 HIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSG-------FNVVGFNWMSSPAATELE 115
+ E LSSG + + A+ +
Sbjct: 78 M---DTDKDPKSVRIGER--EARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMY 132
Query: 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVV 175
+ L K +T +I L+AAR + S +V+
Sbjct: 133 ALTNKILESFFKQLGLN----VHAIATPISTGMSISLCLSAARKKYG--------SNVVI 180
Query: 176 YGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLC 235
Y +H + KA G++ + + + E ++ AI +I+ G P +
Sbjct: 181 Y-PYASHKSPIKAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRPC-VL 236
Query: 236 ATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI--EGADSFS 293
+T+ D + + I + Y I ++ AY A + + D+
Sbjct: 237 STLTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKAFKYRVDAVV 293
Query: 294 LNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353
++ K T + ++ + + + + P +AS +
Sbjct: 294 SSSDKNLLTPIGGGLVYSTDAEFIKEISLSYP----GRASAT-----------------P 332
Query: 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSAS 413
+ + L S G N +++ +L EL+ ++ + ++
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN-----DLSKKTGGKFLDVESPIASC 387
Query: 414 GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWK 473
+ E A +L +G + G ++ + + AA
Sbjct: 388 ISVNSDPVEIAAKLYNL-----RVTGPRGIKKTDHFGNCYLGTYTHDYIV----MNAAIG 438
Query: 474 VVQEKLDGIL 483
V E + +
Sbjct: 439 VRTEDIVNSV 448
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 60/387 (15%), Positives = 131/387 (33%), Gaps = 64/387 (16%)
Query: 40 KRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFN 99
+ + E + IL++++++ ++ F S+ + +++
Sbjct: 3 RNMQE----KGVSEKEILEELKKYRSLD-LKYEDGNIFGSMCSN--VLPITRKIVDIFLE 55
Query: 100 VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARD 159
+ LE + LG +L ++ +GG T EA L L ++
Sbjct: 56 TNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG------T-EANLMALRCIKN 108
Query: 160 --QILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESL 217
+ G + H + +K ++ ++ + +T+ + +
Sbjct: 109 IWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEY---IYAPIKED--YTIDEKFV 163
Query: 218 QAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICP 277
+ A++ + GTT + T+D + L IAK +I++HVDAA+ G + P
Sbjct: 164 KDAVE-----DYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGL--VIP 216
Query: 278 --EFRHFIDGIE-------GADSFSLNAHKWFFTTLDC-CCLWVKNPNALIKALSTNPEF 327
+ ++ G+ G DS +++ HK + L+
Sbjct: 217 FLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILF----------------- 259
Query: 328 LRNKASDSKQVVDYKDW----QITL--SR-RFRALKLWLVLRSFGVANLRNFLRSHVRMA 380
++ VD Q T+ +R F + VLR G R + +
Sbjct: 260 -KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENT 318
Query: 381 QLFQELVGGDNRFEIVAPRNFAVVCFR 407
+ + +N ++ P +V
Sbjct: 319 LYLYKKLKENNFKPVIEP-ILNIVAIE 344
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-32
Identities = 64/385 (16%), Positives = 131/385 (34%), Gaps = 41/385 (10%)
Query: 37 YLRKRLPESA-PYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLS 95
Y+R LP P N P E Q + ++ + F + +++
Sbjct: 22 YVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTW----MEPECDKLIM 77
Query: 96 SGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLA 155
S N + P TEL+N ++ + + P + G G + + EAI+
Sbjct: 78 SSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS--EAIMLAGL 135
Query: 156 AARDQILNEIGRE--NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLT 213
A + + N+ E + + + +K A+ ++ + +K ++ + +
Sbjct: 136 AFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVEL---KEVKLSEGY-YVMD 191
Query: 214 PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY------SIWVHVDA 267
P+ +D + + + A +G+T + + L D+ +HVDA
Sbjct: 192 PQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDA 245
Query: 268 AYAGSACICPEFRHFID-GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPE 326
A G D + S +++ HK+ + +N L + L +
Sbjct: 246 ASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHIN 305
Query: 327 FLRNKASDSKQVVDYKDWQITL--SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383
+L TL S+ + + + L G RN + + +
Sbjct: 306 YL-----------GADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVL 354
Query: 384 QELVGGDNRFEIVA-PRNFAVVCFR 407
+E + RF IV+ +V F
Sbjct: 355 REGLEKTERFNIVSKDEGVPLVAFS 379
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 49/322 (15%), Positives = 98/322 (30%), Gaps = 42/322 (13%)
Query: 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE---I 165
P + ++ ++ + ++ P G I + EA + A + +
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS--EACMLGGMAMKWRWRKRMEAA 134
Query: 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225
G+ +V G K A+ ++ R I + P+ + A D +
Sbjct: 135 GKPTDKPNLVCGP--VQICWHKFARYWDVEL---REIPMRPGQ-LFMDPKRMIEACDEN- 187
Query: 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDI------AKRYSIWVHVDAAYAGSACICPEF 279
+ + T G T + PL D I +H+DAA G
Sbjct: 188 -----TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 242
Query: 280 RHFID-GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338
D + S S + HK+ L C + ++ AL + L N ++L
Sbjct: 243 DIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLG--------- 293
Query: 339 VDYKDWQITL--SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395
+ + SR + + + G + ++A + + +E
Sbjct: 294 --GQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 351
Query: 396 VAPRNFA----VVCFRVLPSAS 413
+ VCF++
Sbjct: 352 ICTGRPDEGIPAVCFKLKDGED 373
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 39/244 (15%), Positives = 71/244 (29%), Gaps = 36/244 (14%)
Query: 144 GTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIK 203
G + TL R + ++ +++ + K+ AG +P +
Sbjct: 127 GMSLTLCFLTLRHKRPK----------AKYIIW-PRIDQKSCFKSMVTAGFEPVVIENV- 174
Query: 204 TTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263
+ ++++A I ++ I T A D L L I Y I
Sbjct: 175 -LEGDELRTDLKAVEAKIQ-ELGPEHILCLHS-TTACFAPRVPDRLEELAVICANYDIPH 231
Query: 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST 323
V+ AY + C + D+F + K F + + N +
Sbjct: 232 VVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM 291
Query: 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383
P AS S +L + + L S G + R L+ M
Sbjct: 292 YPGR----ASAS-----------------PSLDVLITLLSLGCSGYRKLLKERKEMFVYL 330
Query: 384 QELV 387
+
Sbjct: 331 STQL 334
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 4e-10
Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 36/244 (14%)
Query: 144 GTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIK 203
G + TL R + ++ +++ + K+ AG +P +
Sbjct: 145 GMSLTLCFLTLRHKRPK----------AKYIIW-PRIDQKSCFKSMITAGFEPVVIENV- 192
Query: 204 TTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263
+ ++++A + ++ I +T A D L L I Y I
Sbjct: 193 -LEGDELRTDLKAVEAKVQ-ELGPDCILCIH-STTSCFAPRVPDRLEELAVICANYDIPH 249
Query: 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST 323
V+ AY + C + D+F + K F + + N + + +
Sbjct: 250 IVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM 309
Query: 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383
P +AS S +L + + L S G + L+ M
Sbjct: 310 YP----GRASAS-----------------PSLDVLITLLSLGSNGYKKLLKERKEMFSYL 348
Query: 384 QELV 387
+
Sbjct: 349 SNQI 352
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-08
Identities = 68/502 (13%), Positives = 131/502 (26%), Gaps = 178/502 (35%)
Query: 15 DFIADYYRDVEKYPVLSQVEPGYLRKRL----PESAPYN---PEPIETI---LQDVQQHI 64
F+ + ++ P + R RL A YN +P + L +++
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA- 150
Query: 65 VPGIT------------------------------HWQSPYYFAYFPSSGSIAGFLGEML 94
+ W + S ++ EML
Sbjct: 151 -KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---LKNCNSPETVL----EML 202
Query: 95 SSGFNVVGFNWMSSPAATELENIVMDWLGEMLK-------LPKSFLFSGTGGGVI----Q 143
+ NW S + + + + L+ L V+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------VLLNVQN 255
Query: 144 GTTCEA--ILC-TLAAARD-QILNEIGRENISRLVV------YGSDQTHSALQKAA---- 189
A + C L R Q+ + + + + + D+ S L K
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 190 -----QIAGIDP-----------------KNFR-----AIKTTKSSSF-TLTPESLQA-- 219
++ +P N++ + T SS L P +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 220 ---AI---DLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR-----YSIW------ 262
++ I L+ L + + + V+ L + K+ SI
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 263 ---------VH---VDAAYAGSACICPE----------FRHFI----DGIEGADSFSLNA 296
+H VD Y + F I IE + +L
Sbjct: 436 KVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-F 493
Query: 297 HKWFFTTLDCCCL-WVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS-RRFRA 354
F LD +++ I+ ST + + +Q+ YK + I + ++
Sbjct: 494 RMVF---LD---FRFLEQK---IRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYER 543
Query: 355 LKLWLVLRSFGVANLRNFLRSH 376
L V + +FL
Sbjct: 544 L----------VNAILDFLPKI 555
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 6e-05
Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 25/204 (12%)
Query: 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167
S +L++ + +P QG E IL + Q +
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIP-----------AHQGRGAENILFPVLLKYKQKEGKAKN 123
Query: 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227
+ + H L I + K F +T + L+ I
Sbjct: 124 PVFISNFHFDTTAAHVELNGCKAINIVTEKAF-DSETYDDWKGDFDIKKLKENIAQHGAD 182
Query: 228 GLIPLFLCATVGTTAITTVDP--LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--- 282
++ + T + V L + +IAK++ I+V +D+A + R
Sbjct: 183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 242
Query: 283 --------IDGIEGADSFSLNAHK 298
D + AD+ +++A K
Sbjct: 243 NATIKEVIFDMYKYADALTMSAKK 266
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 30/175 (17%)
Query: 142 IQGTTCEAIL---CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKN 198
G EA +LA ++ + H + AA+ AG++
Sbjct: 75 TNGAR-EAKFAVMHSLAKKDAWVV-------MDENC-------HYSSYVAAERAGLNIA- 118
Query: 199 FRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR 258
+ T + +TPE+ I+ + G + L L + + + +
Sbjct: 119 --LVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP-DGNYGNLPDVKKIAKVCSE 175
Query: 259 YSIWVHVDAAYAGSACICPEFRHFIDGIE-GADSFSLNAHKWFFTTLDCCCLWVK 312
Y + + V+ AYA + E GAD + HK + + +K
Sbjct: 176 YDVPLLVNGAYA-----IGRMP--VSLKEIGADFIVGSGHKSMAASGPIGVMGMK 223
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 486 | |||
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 100.0 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.97 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.97 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.96 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.96 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.96 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.96 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.96 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.96 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.96 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.95 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.95 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.95 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.95 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.95 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.95 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.94 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.94 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.94 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.94 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.94 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.94 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.93 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.93 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.93 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.93 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.93 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.93 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.93 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.93 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.93 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.93 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.93 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.93 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.93 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.93 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.92 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.92 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.92 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.92 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.92 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.92 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.92 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.92 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.92 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.92 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.92 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.92 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.92 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.92 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.92 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.92 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.91 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.91 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.91 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.91 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.91 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.91 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.91 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.91 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.91 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.91 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.91 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.91 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.91 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.91 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.91 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.91 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.91 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.91 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.91 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.91 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.91 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.91 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.9 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.9 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.9 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.9 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.9 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.9 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.9 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.9 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.9 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.9 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.89 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.89 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.89 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.89 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.89 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.89 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.89 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.89 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.89 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.89 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.89 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.89 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.89 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.89 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.88 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.88 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.88 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.88 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.88 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.88 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.88 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.88 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.88 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.88 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.88 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.88 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.88 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.87 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.87 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.87 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.87 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.87 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.87 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.87 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.87 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.87 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.87 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.86 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.86 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.86 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.86 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.86 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.86 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.86 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.86 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.85 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.76 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.85 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.85 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.85 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.85 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.85 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.84 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.84 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.84 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.84 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.84 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.84 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.83 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.83 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.83 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.83 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.83 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.83 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.83 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.83 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.82 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.82 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.82 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.82 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.82 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.82 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.82 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.82 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.82 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.82 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.82 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.82 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.81 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.81 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.81 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.81 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.8 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.8 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.8 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.8 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.8 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.8 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.79 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.79 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.79 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.79 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.79 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.78 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.78 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.78 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.77 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.77 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.77 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.77 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.76 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.76 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.75 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.75 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.74 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.74 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.74 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.74 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.73 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.73 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.73 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.72 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.72 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.68 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.67 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.66 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.65 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.56 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.56 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.51 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.51 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.49 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.19 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.27 |
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-73 Score=588.84 Aligned_cols=464 Identities=41% Similarity=0.825 Sum_probs=403.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceec
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~ 80 (486)
||.++||+.++++++.+.+|+++++++||.+..+|++++..++..+|++|.+.+++++++.+.+.++..+|+||+|+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (475)
T 3k40_A 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYF 80 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCcc--CCCcceEEcCCchHHHHHHHHHHH
Q 038818 81 PSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~--~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
++++.+++++++++++.+|+|...|..+|..+++|+++++|+++++|++..+.. .+.++|++|+|||+||+.|+.++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar 160 (475)
T 3k40_A 81 PTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAK 160 (475)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875321 123479999999999999999999
Q ss_pred HHHHHHccccC--------CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 159 DQILNEIGREN--------ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 159 ~~~~~~~~~~~--------~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
++..++.+..+ .++.+|+++..+|+|+.+++++.|+ +++.||+|+ ++ ||+++|+++|++++++|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~---~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~ 234 (475)
T 3k40_A 161 AKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGV---KLRSVQSEN--HR-MRGAALEKAIEQDVAEGLI 234 (475)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTC---EEEEECCBT--TB-CCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCC---ceEEEECCC--CC-cCHHHHHHHHHHHHHCCCc
Confidence 87654321111 1467899999999999999999999 999999985 68 9999999999999888888
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
|++|++++++|++|.+||+++|+++|++||+|+|||+||+++.++.+.++..+.+++.+||+++++|||+++|++||+++
T Consensus 235 ~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~ 314 (475)
T 3k40_A 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMW 314 (475)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred cEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999888888888888888899999999999999999999999
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
++++..+.+.+...++|+..... +...++.+++++++|++.++++|++++.+|.+|+++++++..++++++++.|+++
T Consensus 315 ~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 392 (475)
T 3k40_A 315 LKDPSWVVNAFNVDPLYLKHDMQ--GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD 392 (475)
T ss_dssp ESSGGGC-----------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EeCHHHHHHHhcCCccccCCCcC--CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987766667777888865321 2345677889999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHH
Q 038818 391 NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~ 470 (486)
|+++++.++.+++++|++.+. +..+.++.++|.++|.++++++.+.+..++|+++++++++++||++
T Consensus 393 ~g~~l~~~~~~~iv~f~~~~~-------------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~ 459 (475)
T 3k40_A 393 SRFELAAEINMGLVCFRLKGS-------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEY 459 (475)
T ss_dssp TTEEESSCCBTTEEEEEESSC-------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH
T ss_pred CCEEEecCCceEEEEEEeCCc-------------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHH
Confidence 999999888899999998753 4567788999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 038818 471 AWKVVQEKLDGILAT 485 (486)
Q Consensus 471 ~i~~l~~~~~~l~~~ 485 (486)
+++.|++++++++++
T Consensus 460 ~~~~i~~~~~~~~~~ 474 (475)
T 3k40_A 460 SWKEVSAAADEMEQE 474 (475)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998865
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-73 Score=586.13 Aligned_cols=464 Identities=43% Similarity=0.805 Sum_probs=422.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceec
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~ 80 (486)
||.++||+.++++++.+.+|+++++++||.+..+|++++..++..+|++|.+.+++++++.+.+.++..+|+||+|++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 85 (481)
T 4e1o_A 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYY 85 (481)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCcc---CCCcceEEcCCchHHHHHHHHHH
Q 038818 81 PSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLF---SGTGGGVIQGTTCEAILCTLAAA 157 (486)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~---~~~~~~~~t~ggt~a~~~al~~a 157 (486)
++++++|+++++++.+.+|++...|..+|..+++|+++.+|+++++|++..+.. .+.++|++|+|||+||++|+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~a 165 (481)
T 4e1o_A 86 PALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAA 165 (481)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875321 12347899999999999999999
Q ss_pred HHHHHHHccccC--------CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 158 RDQILNEIGREN--------ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 158 ~~~~~~~~~~~~--------~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
|++..++.+..+ .++.+|+++..+|+|+.+++++.|. +++.||+++ +++||+++|+++|++++++|.
T Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~---~~~~v~~~~--~~~~d~~~Le~~i~~~~~~g~ 240 (481)
T 4e1o_A 166 RKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPVDD--NFSLRGEALQKAIEEDKQRGL 240 (481)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTC---EEEEECCCT--TSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCC---ceEEEEcCC--CCcCCHHHHHHHHHHHHhCCC
Confidence 987654321111 1678999999999999999999999 999999974 679999999999999988888
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEE
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCL 309 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~ 309 (486)
.|++|++++|+|++|.+|||++|+++|++||+|+|||+||+++.+.+++++..+.+++.+||+++++|||+++|++||++
T Consensus 241 ~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l 320 (481)
T 4e1o_A 241 VPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGF 320 (481)
T ss_dssp EEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEE
T ss_pred CcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEE
Confidence 89999999999999999999999999999999999999999998888888888888889999999999999999999999
Q ss_pred EeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 310 WVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 310 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
+++++..+.+.+...+.|+..... ....++.+++++++|++.++++|++++.+|.+|+++++++..++++++++.|++
T Consensus 321 ~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 398 (481)
T 4e1o_A 321 WVKDKYKLQQTFSVNPIYLRHANS--GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRN 398 (481)
T ss_dssp EESBHHHHHTTTCCCCGGGCCTTT--TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHHHHHhcCCchhccCccc--CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998877777778889876432 334567788999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 038818 390 DNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 390 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did 469 (486)
+|+|+++.++.+++++|++.+. +..+.++.+++.++|.++++++.+.+..++|+++++++++++||+
T Consensus 399 ~~g~~~~~~~~~~~v~f~~~~~-------------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~ 465 (481)
T 4e1o_A 399 DPSFEIPAKRHLGLVVFRLKGP-------------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDIL 465 (481)
T ss_dssp CTTEECCSCCCSSEEEEEESSC-------------HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred CCCeEEecCCceeEEEEEeCCc-------------hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHH
Confidence 9999998888899999998653 456778899999999877888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 038818 470 AAWKVVQEKLDGILA 484 (486)
Q Consensus 470 ~~i~~l~~~~~~l~~ 484 (486)
++++.|+++++++++
T Consensus 466 ~~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 466 RDWNLIRDAATLILS 480 (481)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-68 Score=550.78 Aligned_cols=466 Identities=43% Similarity=0.854 Sum_probs=404.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceec
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~ 80 (486)
||.++||++++++++.+.+|+++++++||.+..+|++++..++..+|++|.+.+++++++.+.+.++..+|+||+|+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (486)
T 1js3_A 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCcc--CCCcceEEcCCchHHHHHHHHHHH
Q 038818 81 PSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~--~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
++++.+++.+++++++++|++...|..+|...++|+++++|+++++|++..+.. .+.++|++|+|||+||+.|+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864211 012368999999999999999998
Q ss_pred HHHHHHcccc-C-------CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 159 DQILNEIGRE-N-------ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 159 ~~~~~~~~~~-~-------~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
+...++.+.. | .++.+|+++..+|+|+.++++.+|+ +++.||+|+ +|+||+++|+++|++++++|..
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~---~v~~v~~d~--~~~~d~~~L~~~i~~~~~~g~~ 235 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDG--KFAMRASALQEALERDKAAGLI 235 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCT--TSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCC---ceEEeecCC--CCCCCHHHHHHHHHHHHhCCCC
Confidence 7644321110 1 0245788999999999999999999 999999974 6899999999999999988989
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
|++|++++|+|++|.++|+++|+++|++||+|+|||+||+++.+.+++++..+.+++++|++++++|||+++|++||+++
T Consensus 236 p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~ 315 (486)
T 1js3_A 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315 (486)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEE
Confidence 99999999999999999999999999999999999999999888887788777788899999999999999999999999
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
++++..+.+.+...+.|+...........++.+++++++|++.++++|++++.+|.+++++++++..++++++.+.|+++
T Consensus 316 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 395 (486)
T 1js3_A 316 VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD 395 (486)
T ss_dssp ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987666666666778765322112335566778899999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHH
Q 038818 391 NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~ 470 (486)
|+++++.+|.+++++|++.+. +..+.++.++|.++|+++++++.+.+..++|++++++.++++||++
T Consensus 396 ~~~~~~~~~~~~~v~f~~~~~-------------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ 462 (486)
T 1js3_A 396 PRFEVCAEVTLGLVCFRLKGS-------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL 462 (486)
T ss_dssp TTEEECSCCCSSEEEEEESSC-------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH
T ss_pred CCeEEeCCCceeEEEEEecCh-------------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHH
Confidence 999998878889999998643 3456788888888898777777888889999999899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 038818 471 AWKVVQEKLDGILA 484 (486)
Q Consensus 471 ~i~~l~~~~~~l~~ 484 (486)
+++.|+++++++.+
T Consensus 463 ~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 463 AWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-67 Score=544.71 Aligned_cols=474 Identities=23% Similarity=0.367 Sum_probs=412.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhHHhhc---CCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCc
Q 038818 2 DSEEFRRQGHMIIDFIADYYRDVEKY--PVLSQVEPGYLRKR---LPESAPYNPEPIETILQDVQQHIVPGITHWQSPYY 76 (486)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~---~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~ 76 (486)
+.+++++.++++++.+.+|+++..++ +|.+..+|++++.. ++..+|++|.+.++|++++.+.+.++ ..++||+|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~p~f 98 (511)
T 3vp6_A 20 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYG-VRTGHPRF 98 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTS-CCTTSTTE
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCCc
Confidence 45789999999999999999998765 47788999999999 89999999999999999999887666 55799999
Q ss_pred ceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHH
Q 038818 77 FAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAA 156 (486)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~ 156 (486)
+||+++++.+++++++++++.+|++...|..+|..+++|+++++|+++++|++... .++++|+|||+||+.|+.+
T Consensus 99 ~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~-----~~~~~t~ggt~a~~~al~~ 173 (511)
T 3vp6_A 99 FNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKD-----GDGIFSPGGAISNMYSIMA 173 (511)
T ss_dssp ESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSS-----CEEEEESSHHHHHHHHHHH
T ss_pred eEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCC-----CceEECCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998531 3799999999999999999
Q ss_pred HHHHHHH---HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEE
Q 038818 157 ARDQILN---EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLF 233 (486)
Q Consensus 157 a~~~~~~---~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~ 233 (486)
++++..+ +.|..+.++.+|++|..+|+|+.++++.+|+|..+++.||+++ +|+||+++|+++|+++.++|..|++
T Consensus 174 a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~ 251 (511)
T 3vp6_A 174 ARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFY 251 (511)
T ss_dssp HHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEE
Confidence 9886421 2233334678999999999999999999999887899999985 5799999999999998888988999
Q ss_pred EEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeC
Q 038818 234 LCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKN 313 (486)
Q Consensus 234 vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~ 313 (486)
|++++++|++|.+|||++|+++|++||+|+|||+||+++.+.+++++..+.|++++||+++++|||+++|.+||++++++
T Consensus 252 vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~ 331 (511)
T 3vp6_A 252 VNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKE 331 (511)
T ss_dssp EEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESS
T ss_pred EEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeC
Confidence 99999999999999999999999999999999999999999999888888888999999999999999999999999999
Q ss_pred chHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 038818 314 PNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRF 393 (486)
Q Consensus 314 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 393 (486)
+..+...+...++|+...........++.+++++++|++.++++|++++.+|.+|+++++++..++++++++.|+++|+|
T Consensus 332 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~ 411 (511)
T 3vp6_A 332 KGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF 411 (511)
T ss_dssp TTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTE
T ss_pred HHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 98877778888899876543334456678899999999999999999999999999999999999999999999999999
Q ss_pred EEec--CCCeeEEEEEeecCCCCCCCCC--CccchHHHHHHHHHHHHhcCcEEEeeeeECC-EeEEEEEecCCCCcHHHH
Q 038818 394 EIVA--PRNFAVVCFRVLPSASGLGDGK--ANEGANELNRKLLESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 394 ~~~~--~~~~~~v~f~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~lR~~~~~~~tt~~di 468 (486)
+++. +|.+++++|++.|...+..+.. .....+..+.++.++|.++|++++..+...+ ..++|++++++.++++||
T Consensus 412 ~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di 491 (511)
T 3vp6_A 412 EMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDI 491 (511)
T ss_dssp EESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHH
T ss_pred EEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHH
Confidence 9987 5788999999876532110000 0012345566889999999987776555554 468999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 038818 469 IAAWKVVQEKLDGIL 483 (486)
Q Consensus 469 d~~i~~l~~~~~~l~ 483 (486)
+++++.|+++++.+-
T Consensus 492 ~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 492 DFLIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987653
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-64 Score=525.75 Aligned_cols=475 Identities=23% Similarity=0.370 Sum_probs=400.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhHHhhc---CCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCC
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKY--PVLSQVEPGYLRKR---LPESAPYNPEPIETILQDVQQHIVPGITHWQSPY 75 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~---~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~ 75 (486)
|+.++|++.++++++.+.+|++++.++ ||.+.++|++++.. ++..+|++|.+.+++++++++.+.++.. +.||+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 94 (504)
T 2okj_A 16 NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVR-TGHPR 94 (504)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCC-TTCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccCC-CCCCC
Confidence 689999999999999999999998764 59999999999999 9999999999999999999887766654 45999
Q ss_pred cceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLA 155 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~ 155 (486)
|++|+++++.+++++++++++++|++...|..+|..+++|.++++|+++++|++.+ ..++++|+|||+||++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~-----~~~~~~t~ggtea~~~al~ 169 (504)
T 2okj_A 95 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK-----DGDGIFSPGGAISNMYSIM 169 (504)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSS-----SCEEEEESSHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCC-----CCCEEEeCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999831 1279999999999999999
Q ss_pred HHHHHHHH---HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccE
Q 038818 156 AARDQILN---EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPL 232 (486)
Q Consensus 156 ~a~~~~~~---~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~ 232 (486)
+++.+..+ +.|....++.+|+++..+|+|+.++++.+|+|.++++.||+++ +|+||+++|+++|+++.++|..|+
T Consensus 170 ~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~ 247 (504)
T 2okj_A 170 AARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPF 247 (504)
T ss_dssp HHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCce
Confidence 99875321 1111111255899999999999999999998766799999975 679999999999998888888899
Q ss_pred EEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEee
Q 038818 233 FLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK 312 (486)
Q Consensus 233 ~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~ 312 (486)
+|++++|+|++|.++|+++|+++|++||+|+|||+||+++.+.+++++..+.+++++|++++++|||+++|++||+++++
T Consensus 248 ~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~ 327 (504)
T 2okj_A 248 YVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVK 327 (504)
T ss_dssp EEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEES
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEE
Confidence 99999999999999999999999999999999999999998888877777788889999999999999999999999999
Q ss_pred CchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 313 NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 313 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
++..+...+...++|+...........++.+++++++|++.++++|++++.+|.+|+++++++..++++++.+.|+++|+
T Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~ 407 (504)
T 2okj_A 328 EKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREE 407 (504)
T ss_dssp STTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 98666666667788886543222233567778899999999999999999999999999999999999999999999999
Q ss_pred eEEec--CCCeeEEEEEeecCCCCC-CCCCC-ccchHHHHHHHHHHHHhcCcEEEeeeeECCE-eEEEEEecCCCCcHHH
Q 038818 393 FEIVA--PRNFAVVCFRVLPSASGL-GDGKA-NEGANELNRKLLESINASGQLYVSHGMVAGI-YFIRFAVGATLTEDRH 467 (486)
Q Consensus 393 ~~~~~--~~~~~~v~f~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~-~~lR~~~~~~~tt~~d 467 (486)
++++. +|..++++|++.+..... .++.+ ....+..+.++.+.|.++|++++.++.+.+. .++|++++|+.++++|
T Consensus 408 ~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~ed 487 (504)
T 2okj_A 408 FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSD 487 (504)
T ss_dssp EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHH
T ss_pred EEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHH
Confidence 99987 577889999886431000 00000 0011223567888899999877776667664 7999999889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 038818 468 VIAAWKVVQEKLDGIL 483 (486)
Q Consensus 468 id~~i~~l~~~~~~l~ 483 (486)
|+++++.|+++++++.
T Consensus 488 i~~~~~~l~~~~~~~~ 503 (504)
T 2okj_A 488 IDFLIEEIERLGQDLH 503 (504)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-63 Score=517.97 Aligned_cols=471 Identities=22% Similarity=0.344 Sum_probs=393.3
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHHhcCC--CCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcc
Q 038818 1 MDSEEFRRQGHMIIDFIAD-YYRDVEK--YPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYF 77 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~ 77 (486)
|+.++|++.++++++.+.+ |+++..+ .||.+..+|++++..++..+|++|.+.+++++++++.+.++.. +.||+|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~ 112 (515)
T 2jis_A 34 GDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSVK-TGHPRFF 112 (515)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHSCC-TTSTTEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHHHhcCCCC-CCCCCeE
Confidence 6899999999999999999 9998765 4999999999999999999999999999999999987666654 4599999
Q ss_pred eecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHH
Q 038818 78 AYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAA 157 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a 157 (486)
+|+++++.++++++++++.++|++...|..+|...++|.++++|+++++|++.. ++++|+|||+||+.|+.++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~-------~~~~t~ggtea~~~al~~a 185 (515)
T 2jis_A 113 NQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG-------DGIFCPGGSISNMYAVNLA 185 (515)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC-------EEEEESSHHHHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC-------CeEEcCCcHHHHHHHHHHH
Confidence 999999999999999999988999889999999999999999999999999854 7999999999999999999
Q ss_pred HHHHH---HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEE
Q 038818 158 RDQIL---NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFL 234 (486)
Q Consensus 158 ~~~~~---~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~v 234 (486)
|.+.. +..|..+.++.+|+++..+|+|+.++++.+|+|..+++.||+++ +++||+++|+++|+++..+|..|.+|
T Consensus 186 r~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V 263 (515)
T 2jis_A 186 RYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLV 263 (515)
T ss_dssp HHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEE
Confidence 87542 11122122356899999999999999999999776899999975 67999999999999888778788999
Q ss_pred EeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc
Q 038818 235 CATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 235 v~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
++++++|++|.++|+++|+++|++||+|+|||+||+++.+.++.++..+.+++++|++++|+|||+++|++||+++++++
T Consensus 264 v~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~ 343 (515)
T 2jis_A 264 SATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDT 343 (515)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCC
T ss_pred EEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeCh
Confidence 99999999999999999999999999999999999999988887777788888999999999999999999999999988
Q ss_pred -hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 038818 315 -NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRF 393 (486)
Q Consensus 315 -~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 393 (486)
..+.+.+...++|+..........++++.++++++|++.++++|++++.+|.+|+++++++..++++++.+.|+++|++
T Consensus 344 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 423 (515)
T 2jis_A 344 SNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGF 423 (515)
T ss_dssp SCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred HHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 6666666667788865332222234566778899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCeeEEEEEeecCCCCCC-CCCC-ccchHHHHHHHHHHHHhcCcEEEeeeeECC-EeEEEEEecCCCCcHHHHHH
Q 038818 394 EIVAPRNFAVVCFRVLPSASGLG-DGKA-NEGANELNRKLLESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 394 ~~~~~~~~~~v~f~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~lR~~~~~~~tt~~did~ 470 (486)
+++.++..+.++|++.+...+.. +..+ ....++.+..+.+.+.++|.++++.+.+.+ ..++|++++++.+|++||++
T Consensus 424 ~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~ 503 (515)
T 2jis_A 424 ELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDF 503 (515)
T ss_dssp EESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHH
T ss_pred EEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHH
Confidence 99988878889998864311000 0000 011122345677888889987777666555 57999999889999999999
Q ss_pred HHHHHHHHHHH
Q 038818 471 AWKVVQEKLDG 481 (486)
Q Consensus 471 ~i~~l~~~~~~ 481 (486)
+++.|++++++
T Consensus 504 ~~~~l~~~~~~ 514 (515)
T 2jis_A 504 LLNELERLGQD 514 (515)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999988764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=502.76 Aligned_cols=458 Identities=21% Similarity=0.373 Sum_probs=385.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCC-CCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCccee
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPE-SAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAY 79 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~ 79 (486)
++.++|++.++++++.+.+|+++.+ +| .+..+|++++..++. .+|++|.+.+++++++.+.+.++..+|.||+|++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~ 106 (497)
T 2qma_A 29 LGSAEFASVMSHTTSAMKSVFEQVN-AP-YSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAH 106 (497)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHCC-SS-SCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcc-CC-CCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence 4778999999999999999999874 45 677889999998886 58999999999999999989999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHH
Q 038818 80 FPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARD 159 (486)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~ 159 (486)
+++++.+++++++++...+|.+...|..+|...++|+++++|+++++|+++. ..+++|+|||+||+.++.++|.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~------~~~~~t~ggt~a~~~al~~ar~ 180 (497)
T 2qma_A 107 LHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEK------ADGIFTSGGTQSNQMGLMLARD 180 (497)
T ss_dssp SCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTT------CEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCC------CCeEEcCCchHHHHHHHHHHHH
Confidence 9999999999999999889998889999999999999999999999999753 2799999999999999999987
Q ss_pred HHHHHc-c----ccCC----CCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 160 QILNEI-G----RENI----SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 160 ~~~~~~-~----~~~~----~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
++..+. + ..|. ++.+|+++..+|+|+.++++.+|+|.++++.||+++ +++||+++|+++|+++.++|.+
T Consensus 181 ~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~ 258 (497)
T 2qma_A 181 WIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGLI 258 (497)
T ss_dssp HHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTCE
T ss_pred HHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCCc
Confidence 654210 0 0121 244899999999999999999998766799999975 6799999999999988777777
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
|++|+++.++|++|.++|+++|+++|++||+|+|||+||+++...++ ++..+.+++.+|++++|+|||+++|++||+++
T Consensus 259 ~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~ 337 (497)
T 2qma_A 259 PFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALL 337 (497)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEE
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcceEEEE
Confidence 88899999999999999999999999999999999999999887776 66667778899999999999999999999999
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
++++..+. .+...+.|+..... ...++..++++++|++.++++|++++.+|.+++++++++..+++++|.+.|+++
T Consensus 338 ~~~~~~~~-~~~~~~~yl~~~~~---~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~ 413 (497)
T 2qma_A 338 VNDKSNFK-FLLHHADYLNREHD---ELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN 413 (497)
T ss_dssp ESCGGGGG-GGCC-----------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EeCHHHHH-HhcCCchhcCCccc---cCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99886543 44445667644211 124455678889999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHH
Q 038818 391 NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~ 470 (486)
++++++.++..++++|++.+.. ...+.+++++.+.+.++|+++.+++.+.+..++|++++++.++++||++
T Consensus 414 ~~~~~~~~~~~~~v~f~~~~~~---------~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~ 484 (497)
T 2qma_A 414 DQFELLAEPSLSTVLFRATHET---------ADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFES 484 (497)
T ss_dssp TTEEECSCCSSSEEEEEECCSS---------SCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH
T ss_pred CCeEEEcCCCceEEEEEEcCCc---------cCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHH
Confidence 9999988888899999987531 1234567788888999999877777788888999999889999999999
Q ss_pred HHHHHHHHHHHH
Q 038818 471 AWKVVQEKLDGI 482 (486)
Q Consensus 471 ~i~~l~~~~~~l 482 (486)
+++.|+++++++
T Consensus 485 ~~~~l~~~~~~~ 496 (497)
T 2qma_A 485 LLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=400.71 Aligned_cols=411 Identities=15% Similarity=0.198 Sum_probs=316.4
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhh-cCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHH
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHI-VPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATE 113 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~ 113 (486)
...++..++..+|++|.+.++|++++.+.+ .++...++||+|++. .+. ..+.+++..+++.+...|..+|...+
T Consensus 7 ~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~---~~~--~~v~e~~~~a~~~~~~~~~~~~~~~~ 81 (452)
T 2dgk_A 7 KSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT---WDD--ENVHKLMDLSINKNWIDKEEYPQSAA 81 (452)
T ss_dssp --------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCC---CCC--HHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred hHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCC---Cch--HHHHHHHHHHhccCCCChhhChhHHH
Confidence 445566778899999999999999999988 577778889998862 122 35788999899888888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC--CCeEEEecCCCchHHHHHHHH
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI--SRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~--~~~~v~~s~~~H~s~~~a~~~ 191 (486)
+|+++++|+++++|++.+.. +...+++|+|||+||+.++.+++..+.++....|. +++.|+++. +|+++.++++.
T Consensus 82 l~~~~~~~la~l~g~~~~~~--~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~ 158 (452)
T 2dgk_A 82 IDLRCVNMVADLWHAPAPKN--GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARY 158 (452)
T ss_dssp HHHHHHHHHHHHTTCCCCTT--SCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccc--cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHH
Confidence 99999999999999986410 00148999999999999999887644321111221 135788898 99999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh------CceEEe
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY------SIWVHV 265 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~------g~~lhv 265 (486)
+|+ +++.||+++ ++|.+|+++|+++|+++ +.+|++++|+|++|.++|+++|+++|++| |+|+||
T Consensus 159 ~G~---~v~~v~~~~-~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~v 228 (452)
T 2dgk_A 159 WDV---ELREIPMRP-GQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 228 (452)
T ss_dssp TTC---EEEECCCBT-TBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred cCc---eEEEEecCC-CCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEE
Confidence 999 999999985 35899999999999753 56899999999999999999999999996 999999
Q ss_pred eccccchhc--cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 266 DAAYAGSAC--ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 266 D~a~g~~~~--~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
|+||+++.. ..+..+..+ .++++|++++++|||+++|.++|+++++++..+.+.+...+.|+... +..
T Consensus 229 D~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 298 (452)
T 2dgk_A 229 DAASGGFLAPFVAPDIVWDF-RLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ---------IGT 298 (452)
T ss_dssp ECTTGGGTHHHHCTTCCCST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCC---------EEE
T ss_pred EcccHHHHHHhhCccchhhc-CCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCC---------CCC
Confidence 999988754 233322222 25689999999999999999999999988754433444445565321 123
Q ss_pred ccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC----CCeeEEEEEeecCCCCCCCC
Q 038818 344 WQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP----RNFAVVCFRVLPSASGLGDG 418 (486)
Q Consensus 344 ~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~~ 418 (486)
++++++|++ .++++|++++.+|.+++++++++..++++++.+.|+++++++++.+ +..++++|++.+...
T Consensus 299 ~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~----- 373 (452)
T 2dgk_A 299 FAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED----- 373 (452)
T ss_dssp CCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCC-----
T ss_pred cccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCccc-----
Confidence 456778877 6789999999999999999999999999999999999988999865 577899999865210
Q ss_pred CCccchHHHHHHHHHHHHhcCcE---EEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 419 KANEGANELNRKLLESINASGQL---YVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
...+ ..++.++|.++|+. +..+..+.+..++|++++++. |++|+|++++.|+++++.+.+
T Consensus 374 ---~~~~--~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~-t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 374 ---PGYT--LYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGF-EMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp ---CSCC--HHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCC--HHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 0001 24677778788973 333334446779999997655 588999999999999877653
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=381.34 Aligned_cols=414 Identities=17% Similarity=0.230 Sum_probs=326.6
Q ss_pred CCCCCChhHHhhcCCC-CCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCc-ceecCCCCCHHHHHHHHHHhhcCCCccccc
Q 038818 29 VLSQVEPGYLRKRLPE-SAPYNPEPIETILQDVQQHIVPGITHWQSPYY-FAYFPSSGSIAGFLGEMLSSGFNVVGFNWM 106 (486)
Q Consensus 29 ~~~~~~p~~~~~~~~~-~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 106 (486)
..|...+.+++..++. .+|+.|.+.+++++.+.+.+.. ..+|++ ++.+.+ ..++..+.+++...++.+...|.
T Consensus 14 ~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l----~gnp~~~l~s~~t-~~~~~~v~~~l~~~~~~~~~~~~ 88 (502)
T 3hbx_A 14 VHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELML----DGNPRLNLASFVT-TWMEPECDKLIMSSINKNYVDMD 88 (502)
T ss_dssp CSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGG----SCCGGGBTTCCSC-CCCCHHHHHHHHHTTTCBTTCTT
T ss_pred ccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhcc----CCCCCceeccccC-CCCCHHHHHHHHHHhccCCCChh
Confidence 3455678889988987 8999999999999999987642 246764 332222 22334578888888988888888
Q ss_pred cChhhHHHHHHHHHHHHHHcCCC--CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC--CCCeEEEecCCCc
Q 038818 107 SSPAATELENIVMDWLGEMLKLP--KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN--ISRLVVYGSDQTH 182 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~--~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~--~~~~~v~~s~~~H 182 (486)
.+|...++|.++++|+++++|++ .+. ...|++|+|||+||+.++.+++..+.++.+.+| ..++.|+++..+|
T Consensus 89 ~~p~~~~le~~~~~~la~l~g~~~~~~~----~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h 164 (502)
T 3hbx_A 89 EYPVTTELQNRCVNMIAHLFNAPLEEAE----TAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQ 164 (502)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSSC----CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCC
T ss_pred cChhHHHHHHHHHHHHHHHhCCCccccc----CCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCch
Confidence 99999999999999999999998 221 125778999999999999988776544322112 1345889999999
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh---
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--- 259 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--- 259 (486)
+++.++++.+|+ +++.||+++ +++.+|+++|+++|+++ |.+|+++.++|++|.++|+++|+++|+++
T Consensus 165 ~s~~~~~~~~G~---~~~~v~~~~-~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~ 234 (502)
T 3hbx_A 165 VCWEKFARYFEV---ELKEVKLSE-GYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKE 234 (502)
T ss_dssp HHHHHHHHHTTC---EEEEECCBT-TBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc---eeEEEecCC-CcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhhc
Confidence 999999999999 999999985 34899999999998764 56899999999999999999999999999
Q ss_pred ---CceEEeeccccchhc--cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCC
Q 038818 260 ---SIWVHVDAAYAGSAC--ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD 334 (486)
Q Consensus 260 ---g~~lhvD~a~g~~~~--~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~ 334 (486)
|+|+|||+||+++.. ..+..+..+. +.++|++++++|||+++|.++|+++++++..+...+...+.|+....
T Consensus 235 ~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~-- 311 (502)
T 3hbx_A 235 TGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ-- 311 (502)
T ss_dssp HCCCCCEEEECTTGGGTHHHHCTTCCCSTT-STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE--
T ss_pred cCCCCeEEEECCccchhhhhhCcccccccC-CCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC--
Confidence 999999999987653 2444443332 56899999999999999999999999988765455555566765421
Q ss_pred CCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCC
Q 038818 335 SKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSA 412 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~ 412 (486)
..+++.++|+. .++++|++++.+|.+++.+++++..+++++|.+.|+++++++++.+ +..++++|++.+..
T Consensus 312 -------~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~ 384 (502)
T 3hbx_A 312 -------PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSS 384 (502)
T ss_dssp -------EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCS
T ss_pred -------CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCC
Confidence 13456677775 6789999999999999999999999999999999999988999876 78899999997531
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHhcCcEE---EeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 413 SGLGDGKANEGANELNRKLLESINASGQLY---VSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.. + ...+.+.|.++|+++ ..+....+..++|++++ ..++++|+|.+++.|+++++.+.+
T Consensus 385 --------~~--~--~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~-~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 385 --------CH--T--EFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR-EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp --------SC--C--HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred --------cC--C--HHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 00 1 236778888889853 22223345679999996 577888999999999999887754
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=346.09 Aligned_cols=393 Identities=15% Similarity=0.205 Sum_probs=304.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcC-CCcCCCCCCcceecCCC-CCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHH
Q 038818 42 LPESAPYNPEPIETILQDVQQHIVP-GITHWQSPYYFAYFPSS-GSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVM 119 (486)
Q Consensus 42 ~~~~~p~~~~~~~~il~~l~~~~~~-~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~ 119 (486)
....+|++|.+.+++++++++.... +...|.+|+|+|+++.+ +.....+.+.+..+.+.+...|..+|...++|+++.
T Consensus 34 ~~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (497)
T 3mc6_A 34 NFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVV 113 (497)
T ss_dssp CCSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHH
Confidence 3467899999999999999987653 56778899999987554 345556667777666667778888999999999999
Q ss_pred HHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCe
Q 038818 120 DWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNF 199 (486)
Q Consensus 120 ~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v 199 (486)
+|+++++|++.. ...+++++|||+|+..++.+++++..++. |.+++.|+++..+|+++.++++.+|+ ++
T Consensus 114 ~~la~~~g~~~~-----~~~~~~~~ggt~a~~~a~~a~~~~~~~~~---g~~~~~Vi~~~~~h~~~~~~~~~~G~---~~ 182 (497)
T 3mc6_A 114 SMVLRMFNAPSD-----TGCGTTTSGGTESLLLACLSAKMYALHHR---GITEPEIIAPVTAHAGFDKAAYYFGM---KL 182 (497)
T ss_dssp HHHHHHTTCCTT-----TCCEEEESSHHHHHHHHHHHHHHHHHHHS---CCSSCEEEEETTSCHHHHHHHHHSCC---EE
T ss_pred HHHHHHhCCCCC-----CCeEEEcCcHHHHHHHHHHHHHHHHHhcC---CCCCceEEEeCCccHHHHHHHHHcCC---eE
Confidence 999999999821 12789999999999999999987654332 23446899999999999999999999 99
Q ss_pred EEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc----
Q 038818 200 RAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI---- 275 (486)
Q Consensus 200 ~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~---- 275 (486)
+.||+++ +++.+|+++|+++|+++ +.+|+++.++|++|.++|+++|+++|++||+|+|||+||+++...
T Consensus 183 ~~v~~~~-~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~ 255 (497)
T 3mc6_A 183 RHVELDP-TTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEK 255 (497)
T ss_dssp EEECBCT-TTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTT
T ss_pred EEEecCc-ccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhh
Confidence 9999985 35799999999998653 568999999999999999999999999999999999999876543
Q ss_pred -----CccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 276 -----CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 276 -----~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
.+.+.. ...++|++++++||++++|.++|+++++++......+...+.|... .+...++.++|
T Consensus 256 ~~~~~~~~~~~---~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~~ 323 (497)
T 3mc6_A 256 AGYKNLPLLDF---RVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG---------LYGSPTLAGSR 323 (497)
T ss_dssp TTCCSCCCCST---TSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTS---------CBCCSSSCSSC
T ss_pred hcccCCccccc---cCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCC---------CcCCcCcccCC
Confidence 111111 1347899999999999999999999999875532222222222211 11222333333
Q ss_pred CC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 351 RF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 351 ~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
.. ..+++|++++.++.+++++++++..++++++++.|++ +|+++++.++..++++|...+. ..
T Consensus 324 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~---------------~~ 388 (497)
T 3mc6_A 324 PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL---------------NI 388 (497)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTT---------------TH
T ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCC---------------CH
Confidence 32 2457899999999999999999999999999999999 6999998888888999975421 13
Q ss_pred HHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 429 RKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.++.+.|.++|+.+ ... .....+|++++ .+++++++++++.|+++++++.+
T Consensus 389 ~~l~~~L~~~Gi~v-~~~--~~~~~~ri~~~--~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 389 HELSDRLSKKGWHF-NAL--QKPVALHMAFT--RLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp HHHHHHHHTTTCBC-EEC--CSSCCEEEECC--TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCEEE-ecC--CCCCeEEEEEe--CCCHHHHHHHHHHHHHHHHHHHh
Confidence 46777888889743 222 12236899986 56777999999999999887653
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=343.20 Aligned_cols=393 Identities=18% Similarity=0.180 Sum_probs=308.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCC-CCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHH
Q 038818 44 ESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSS-GSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWL 122 (486)
Q Consensus 44 ~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l 122 (486)
..+|++|.+.+++++++++.+.++...|.+++|+|++..+ +..+..+.+.+....+.+...|...|...++|.++++|+
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~l 148 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMT 148 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHH
Confidence 5689999999999999999888888889999999998653 556778888888888888888888999999999999999
Q ss_pred HHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEE
Q 038818 123 GEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202 (486)
Q Consensus 123 ~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v 202 (486)
++++|++.+. ....+++|+|||+||..++.+++.+..++. |.+++.|+++..+|+++.++++.+|+ +++.|
T Consensus 149 a~~~g~~~~~---~~v~~~~t~ggt~a~~~al~a~~~~g~~~~---g~~~d~Vi~~~~~~~~~~~~~~~~G~---~v~~v 219 (514)
T 3mad_A 149 AHMLGGDAAG---GTVCGTVTSGGTESLLLAMKTYRDWARATK---GITAPEAVVPVSAHAAFDKAAQYFGI---KLVRT 219 (514)
T ss_dssp HHHTTGGGGT---SCCEEEEESSHHHHHHHHHHHHHHHHHHHH---CCSSCEEEEETTSCTHHHHHHHHHTC---EEEEE
T ss_pred HHHcCCCCcc---CCcceEEcCcHHHHHHHHHHHHHHHhhhhc---CCCCCeEEEeCccchHHHHHHHHcCC---eeEEe
Confidence 9999997310 001459999999999999999887643221 23457899999999999999999999 99999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc-------
Q 038818 203 KTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI------- 275 (486)
Q Consensus 203 ~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~------- 275 (486)
|+++ ++++|+++|+++|+++ +.+|+++.++|++|.++|+++|+++|++||+|+|+|+||+++...
T Consensus 220 ~~~~--~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~ 291 (514)
T 3mad_A 220 PLDA--DYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGY 291 (514)
T ss_dssp CBCT--TSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC
T ss_pred eeCC--CCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCC
Confidence 9986 6799999999998753 568999999999999999999999999999999999999886542
Q ss_pred -CccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC-
Q 038818 276 -CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR- 353 (486)
Q Consensus 276 -~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~- 353 (486)
.+.+.. ...++|++++++||++++|.++|+++++++......+.....|... .+..+++.+++...
T Consensus 292 ~~~~~~~---~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~gs~~~~~ 359 (514)
T 3mad_A 292 PVPPFDF---RLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG---------LYFSPTFAGSRPGAL 359 (514)
T ss_dssp CCCCCST---TSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC---------SEEESSSCSSCCHHH
T ss_pred CCCcccc---cCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC---------cccCCccCCCCchHH
Confidence 111111 2347899999999999999999999999876543211111111110 01122334454433
Q ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHH
Q 038818 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLE 433 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (486)
.+++|++++.++.+++++++++..++++++.+.|+++++++++.++ .+++.|..... + ..++.+
T Consensus 360 ~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~-------------~--~~~l~~ 423 (514)
T 3mad_A 360 SATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDEL-------------N--IYQVME 423 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEEECSSS-------------C--HHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEEeCCCC-------------C--HHHHHH
Confidence 4789999999999999999999999999999999999999988665 45666654321 1 246777
Q ss_pred HHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 434 SINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 434 ~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.|.++|+.+ .+. .....+|++++++.+++++|+++++.|+++++++.+
T Consensus 424 ~L~~~Gi~v-~g~--~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 424 EMAGRGWRL-NGL--HRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp HHHTTTCBC-EEE--TTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCEe-ccC--CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 888889754 322 223569999988888888999999999999887654
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=309.27 Aligned_cols=380 Identities=13% Similarity=0.061 Sum_probs=265.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCcCC-----------------CCCCcceecCCCCCHHHHHHHHHHhhcCCCccccc
Q 038818 44 ESAPYNPEPIETILQDVQQHIVPGITHW-----------------QSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWM 106 (486)
Q Consensus 44 ~~~p~~~~~~~~il~~l~~~~~~~~~~~-----------------~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 106 (486)
..+|++|.+.++|...|.++-.-...+| ..|+||||+++. +..+|++.. |. .|.
T Consensus 21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~-~~~ 91 (450)
T 3bc8_A 21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP-KAA 91 (450)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-SBH
T ss_pred ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-ccc
Confidence 4689999999999998887543333333 236888998875 445577765 33 778
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch-HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC-EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt-~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
.+|....+|+++..|+.+++|+|..+ .+++++|+| +++.+++.++|... .++..|+++..+|.|+
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~~------~~~lV~GaT~~~~a~~L~aar~~~--------~~~~~viv~r~aHkSv 157 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSVA------SCFVVPMATGMSLTLCFLTLRHKR--------PKAKYIIWPRIDQKSC 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCC------EEEEESSCHHHHHHHHHHHHHHHC--------TTCCEEEEECCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCc------eEEEECCHHHHHHHHHHHHcchhh--------cCCCEEEEECCcHHHH
Confidence 89999999999999999999999874 678999998 77887788887631 0235567778899999
Q ss_pred HHHHHHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 186 QKAAQIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
.+++.++|+ ..+.|+... ++.+.||+++|+++|+++.. ..+.+|+.+.+++.+|.+|||++|+++|++||+|+|
T Consensus 158 ~kAl~l~Gl---~p~~v~~~~~~~~~~id~~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~ 232 (450)
T 3bc8_A 158 FKSMVTAGF---EPVVIENVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHV 232 (450)
T ss_dssp HHHHHHTTC---EEEEECCEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHcCC---eeEEEEeeecCccCCcCHHHHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEE
Confidence 999999999 766665421 13689999999999988642 246677777777777899999999999999999999
Q ss_pred eeccccchhccCccch-hhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 265 VDAAYAGSACICPEFR-HFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~-~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
||+|||+.+.+..+.. ..+.. ++||+++.|+|||+.+|.++++++++++..+.+... .|...
T Consensus 233 VD~A~G~~~~~~~~l~~~a~~~-~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g~------------- 295 (450)
T 3bc8_A 233 VNNAYGLQSSKCMHLIQQGARV-GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGR------------- 295 (450)
T ss_dssp EECTTTTTCHHHHHHHHHHHHH-SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSC-------------
T ss_pred EECCCchhhhhhHhHHHHHhcc-cCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---HhhcC-------------
Confidence 9999998655433221 11111 589999999999999999999999998877654321 23211
Q ss_pred ccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCee-EEEEEeecCCCCCCCCC
Q 038818 344 WQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNFA-VVCFRVLPSASGLGDGK 419 (486)
Q Consensus 344 ~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~-~v~f~~~~~~~~~~~~~ 419 (486)
+.+ ..++.+|.++..+|.+++++.+++..++++++++.|++++ +++++..+..+ ..++.+.....
T Consensus 296 ---~s~--SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~------ 364 (450)
T 3bc8_A 296 ---ASA--SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG------ 364 (450)
T ss_dssp ---BCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS------
T ss_pred ---Ccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccc------
Confidence 000 1248999999999999999999999999999999999888 88887654322 22232221100
Q ss_pred CccchHHHHHHHHHHHHh---cCcEEEee--------ee---------ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 420 ANEGANELNRKLLESINA---SGQLYVSH--------GM---------VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~---~g~~~~~~--------~~---------~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..+.+ ..+|.-.+.. +|.-...+ .. ..+..++=+.+ ++..+++|+++++++|+++.
T Consensus 365 -~~~~D--~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~-sig~~~~di~~l~~~L~~~~ 440 (450)
T 3bc8_A 365 -HHDKA--VTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAA-AIGMKMQDVDLFIKRLDKCL 440 (450)
T ss_dssp -SSSCH--HHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEEC-CTTCCHHHHHHHHHHHHHHH
T ss_pred -cccCC--CceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEe-cCCCCHHHHHHHHHHHHHHH
Confidence 00011 1233333333 33322210 00 11233444444 67889999999999999987
Q ss_pred HHHh
Q 038818 480 DGIL 483 (486)
Q Consensus 480 ~~l~ 483 (486)
++..
T Consensus 441 ~~~~ 444 (450)
T 3bc8_A 441 NIVR 444 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=298.59 Aligned_cols=381 Identities=16% Similarity=0.157 Sum_probs=288.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHH
Q 038818 45 SAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGE 124 (486)
Q Consensus 45 ~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~ 124 (486)
.+|+.|.+.+++++.+.+.. +....+.+|.|+|+..+++.+ . +.+.+...+..+...+...+...+++.++++++++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 80 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYR-SLDLKYEDGNIFGSMCSNVLP-I-TRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGS 80 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHH-TTSCCGGGTCBCSCSCCCCCT-H-HHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCeEEEecCCCcH-H-HHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHH
Confidence 57999999999999999854 556677889999998765443 3 45566666655444445556778999999999999
Q ss_pred HcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH--ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEE
Q 038818 125 MLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE--IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAI 202 (486)
Q Consensus 125 l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~--~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v 202 (486)
++|.+.. .+++|+|||+|+..++.+++..+... .+....+++.|+++..+|+++.++++.+|+ +++.+
T Consensus 81 ~~~~~~~-------~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v 150 (397)
T 3f9t_A 81 LLNNKDA-------YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDL---EYIYA 150 (397)
T ss_dssp HTTCTTC-------EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTC---EEEEE
T ss_pred HhCCCCC-------CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCc---eeEEE
Confidence 9999765 68999999999999999887653211 111122477899999999999999999999 99999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccc---
Q 038818 203 KTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEF--- 279 (486)
Q Consensus 203 ~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~--- 279 (486)
|+++ ++.+|+++|++++++. .+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++|+++.......
T Consensus 151 ~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~ 223 (397)
T 3f9t_A 151 PIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK 223 (397)
T ss_dssp CBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGC
T ss_pred eeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccc
Confidence 9985 5799999999999872 13478889999999999999999999999999999999998765422110
Q ss_pred ------hhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-C
Q 038818 280 ------RHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-F 352 (486)
Q Consensus 280 ------~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~ 352 (486)
...+. . ++|++++++||++++|.++|+++++++.... .+....+|+.... .....+++. .
T Consensus 224 ~~~~~~~~~~~-~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~ 290 (397)
T 3f9t_A 224 KKGVNYKFDFS-L-GVDSITIDPHKMGHCPIPSGGILFKDIGYKR-YLDVDAPYLTETR----------QATILGTRVGF 290 (397)
T ss_dssp CTTCCCCCSGG-G-TCSEEECCTTTTTCCCSSCEEEEESSGGGGG-GTCEECTTSSSSE----------ECSSCSSCCSH
T ss_pred ccccccccccc-c-cCCeEEEccccccCCCCCceEEEEeCHHHHH-hhccCCccccCCC----------ccccccccccc
Confidence 00111 2 6899999999999999999999998876532 2322233433211 112223333 2
Q ss_pred CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHH
Q 038818 353 RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLL 432 (486)
Q Consensus 353 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 432 (486)
..++++++++.++.+++.++.++..++++++.+.|+++ +++++.++..++++|.... ...+.
T Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~-----------------~~~~~ 352 (397)
T 3f9t_A 291 GGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED-----------------YKEVC 352 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT-----------------HHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC-----------------HHHHH
Confidence 45788888888888999999999999999999999998 8887777788888877642 24567
Q ss_pred HHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 433 ESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 433 ~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.++|+. +.+.. ...++|+++. ..++++|++++++.|+++++
T Consensus 353 ~~l~~~gi~-v~~~~--~~~~~Ri~~~-~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 353 KKLRDRGIY-VSVCN--CVKALRIVVM-PHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHTTCB-CEECS--SSSEEEEECC-TTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCeE-EeccC--CCCEEEEEEc-CCCCHHHHHHHHHHHHHhhC
Confidence 777778874 33321 2468999985 67788899999999998754
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=309.73 Aligned_cols=394 Identities=13% Similarity=0.109 Sum_probs=273.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCC
Q 038818 3 SEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPS 82 (486)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~ 82 (486)
++.+.+++.+.++...++++++-. ...+|++|.+.+++.+.+.+..... ...|+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~lp~~g~~~~~i~~~~~~~~~~~-----~~~yld~aa~ 89 (456)
T 2z67_A 31 PKNMEKRGELVLNEYLKEIEDVFN----------------HRKIPENGIDDEKIKLFLKFLSMMD-----TDKDPKSVRI 89 (456)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHH----------------HCSCCSSCCCHHHHHHHHHHHHTTB-----GGGCTTCEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhc----------------cCCCCCCCCCHHHHHHHHHHHHhcc-----cccccccccc
Confidence 356677777777766666655321 1346888899999888777654322 1235554443
Q ss_pred CCCHHHHHHHHHH----hhcCC----------CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch-
Q 038818 83 SGSIAGFLGEMLS----SGFNV----------VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC- 147 (486)
Q Consensus 83 ~~~~~~~~~~~l~----~~~n~----------~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt- 147 (486)
++.+..++..+.. .+++. +. .|..+|.+.++++++++|+++++|++. .+++|+|||
T Consensus 90 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~--------~~~~t~g~te 160 (456)
T 2z67_A 90 GEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASIMYALTNKILESFFKQLGLNV--------HAIATPISTG 160 (456)
T ss_dssp SSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHHHHHHHHHHHHHHHHHTTCCC--------EEEEESSCHH
T ss_pred ccccccccccccCccccccCCCccHHHHHHhhCc-ccccCcHHHHHHHHHHHHHHHHcCCCC--------CEEEeCcHHH
Confidence 3333322222111 11121 21 445566788999999999999999874 279999999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHH
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQ 226 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~ 226 (486)
++|+.++.+++... ++..|+++..+|+|+.++++..|+ +++.++..+ +++|.+|+++|+++|+....
T Consensus 161 ~a~~~al~~~~~~~---------~~~~vi~~~~~h~s~~~~~~~~G~---~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~ 228 (456)
T 2z67_A 161 MSISLCLSAARKKY---------GSNVVIYPYASHKSPIKAVSFVGM---NMRLVETVLDGDRVYVPVEDIENAIKKEIE 228 (456)
T ss_dssp HHHHHHHHHHHHHH---------CCCEEEEECCCCHHHHHHHHHTTC---EEEEECCEEETTEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---------CCCEEEEECCCcHHHHHHHHHcCC---CceEEEEeccCCCCCcCHHHHHHHHHHHhh
Confidence 67777777765531 345566677799999999999999 898888731 23689999999999943322
Q ss_pred CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhc-cCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 227 AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSAC-ICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 227 ~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~-~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
++ .+++|+.+.++|++|.++|+++|+++|+++|+|+|||+||++... ..+.....+.+ ++|++++++|||+++|.+
T Consensus 229 ~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~hK~~~~p~g 305 (456)
T 2z67_A 229 LG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSDKNLLTPIG 305 (456)
T ss_dssp TT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHHHHHCCCSS
T ss_pred CC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEEEcCCCCcCCCCC
Confidence 22 366788899999999999999999999999999999999986544 22322222333 799999999999999999
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 385 (486)
+|+++++++..+... .+.|..... ...++++|.++..++.++++++.++..++++++.+
T Consensus 306 ~G~l~~~~~~~~~~l---~~~~~g~~~------------------~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~ 364 (456)
T 2z67_A 306 GGLVYSTDAEFIKEI---SLSYPGRAS------------------ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDE 364 (456)
T ss_dssp CEEEEESCHHHHHHH---HTTSCSCBC------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCHHHHhhc---CcCCCCCCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877654432 222321100 01267889999999999999999999999999999
Q ss_pred HHhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE--EEe-------ee--eECCE
Q 038818 386 LVGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL--YVS-------HG--MVAGI 451 (486)
Q Consensus 386 ~L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~--~~~-------~~--~~~~~ 451 (486)
.|++++ ++.+.. +. ++++|.+.... . ...+.++|.++|+. -+. +. .....
T Consensus 365 ~L~~~~~~~g~~v~~-~~-~~v~~~~~~~~------------~--~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~ 428 (456)
T 2z67_A 365 LLNDLSKKTGGKFLD-VE-SPIASCISVNS------------D--PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTH 428 (456)
T ss_dssp HHHHHHHHSSCCBCC-CC-CSSEEEEECSS------------C--HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSC
T ss_pred HHHhcccccCCEecC-CC-CeEEEEEeccc------------H--HHHHHHHHHHcCCCcceEEeecCccccccccccCc
Confidence 999885 766654 44 88888874221 0 23456666666641 121 00 01124
Q ss_pred eEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 452 YFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 452 ~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+++|+++ ...+|++|||+++++|++++
T Consensus 429 ~~vr~s~-~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 429 DYIVMNA-AIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CEEEEEC-CTTCCHHHHHHHHHHHHTC-
T ss_pred chhhhhh-hcCCCHHHHHHHHHHHHHHh
Confidence 6899998 46788999999999998753
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=273.21 Aligned_cols=395 Identities=13% Similarity=0.068 Sum_probs=265.4
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccc-cChhhHH
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWM-SSPAATE 113 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~-~~~~~~~ 113 (486)
|+.++...+..+| +.+..++++.+.++...+...+.+..|+| -..+...|.++.++...+.+-+..... .++...+
T Consensus 31 p~~~~~~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~ 107 (474)
T 1wyu_B 31 PKEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALR 107 (474)
T ss_dssp CGGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHH
T ss_pred CHHHhccCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHH
Confidence 5666665567788 78999999999987766655555667777 333334455555555442221211222 4778889
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
++.++.+|+++++|++. ..++++|||+|+..|+.+++.....+ |.. .++..|+++..+|.+..++++..|
T Consensus 108 l~~~l~~~la~~~g~~~--------~~~~~~ggt~a~~~al~~~~~~~~~~-Gd~-~~r~~Vlv~~~~h~~~~~~~~~~G 177 (474)
T 1wyu_B 108 LMWELGEYLKALTGMDA--------ITLEPAAGAHGELTGILIIRAYHEDR-GEG-RTRRVVLVPDSAHGSNPATASMAG 177 (474)
T ss_dssp HHHHHHHHHHHHHTCSE--------EECCCSSHHHHHHHHHHHHHHHHHHT-TCT-TTCCEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCc--------eeecChHHHHHHHHHHHHHHHHHHhc-CCc-cCCCEEEEeCCcChhhHHHHHHCC
Confidence 99999999999999874 35788999999999888887643221 110 134478889999999999999999
Q ss_pred CCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-CCchHHHHHHHHhCceEEeeccccch
Q 038818 194 IDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-DPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 194 ~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-dpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+ +++.||+++ +|.+|+++|+++|+++ +.+|+++.+ |++|.+ +|+++|+++|++||+|+|+|++|+.+
T Consensus 178 ~---~vv~v~~~~--~~~~d~~~L~~~i~~~------t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~ 245 (474)
T 1wyu_B 178 Y---QVREIPSGP--EGEVDLEALKRELGPH------VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNA 245 (474)
T ss_dssp C---EEEEECBCT--TSSBCHHHHHHHCSTT------EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGG
T ss_pred C---EEEEecCCC--CCCcCHHHHHHhhCCC------ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhh
Confidence 9 999999975 5799999999998654 346777776 579999 89999999999999999999999765
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCCC-----cceEEEeeCchHHHHHhcCCcccccCccCCC----CCccCCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-----DCCCLWVKNPNALIKALSTNPEFLRNKASDS----KQVVDYKD 343 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-----~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~----~~~~~~~~ 343 (486)
....-.... .++|++++++||++++|. ++|+++++++.. +.+. ..++....... ........
T Consensus 246 ~~g~~~~~~-----~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~--~~l~--~~~~~~~g~~~~~~~~~~~~~~~ 316 (474)
T 1wyu_B 246 IMGWARPGD-----MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA--PYLP--VPLVERGEEGFYLDFDRPKSIGR 316 (474)
T ss_dssp TTTTCCHHH-----HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG--GGCC--SCEEEECSSCEEEECCCTTCCCC
T ss_pred hccCCCccc-----CCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHH--HhCC--CCeeeccCCeeEecccCcccCcc
Confidence 431101111 168999999999999986 689999987522 1221 11111000000 00000000
Q ss_pred ccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCCCCCCCCCcc
Q 038818 344 WQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 344 ~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
....++......++|..++.+|.++++++.++..++++++.+.|+++ ++++..++ .++.+.+.+ +..
T Consensus 317 ~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~---------- 384 (474)
T 1wyu_B 317 VRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PEG---------- 384 (474)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-STT----------
T ss_pred cccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CCC----------
Confidence 00001111223556777777888999999999999999999999987 88774332 232233333 211
Q ss_pred chHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.....+.++|.++|+.. ....+. ...++|++++ ..+++++++++++.|+++++
T Consensus 385 ---~~~~~l~~~L~~~Gi~~-~~~~~~~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 385 ---FRALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPT-ETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp ---CCHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCC-TTSCHHHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHCCccc-cccccccccCCEEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 01345677777778752 221111 2468999985 46678899999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=253.73 Aligned_cols=358 Identities=15% Similarity=0.064 Sum_probs=247.5
Q ss_pred CCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHH
Q 038818 71 WQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAI 150 (486)
Q Consensus 71 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~ 150 (486)
..+|.++-+.|++...+..+.+.+.... .. ..++....+..++++++++++|.+... ..++++|||+|+
T Consensus 9 ~~~~~~~~~~pgp~~~~~~v~~a~~~~~---~~--~~~~~~~~~~~~~~~~la~~~~~~~~~------~v~~~~sgt~al 77 (411)
T 3nnk_A 9 LNPPSRLLMGPGPINADPRVLRAMSSQL---IG--QYDPAMTHYMNEVMALYRGVFRTENRW------TMLVDGTSRAGI 77 (411)
T ss_dssp CCCCCCEEESSSCCCCCHHHHHHHTSCC---CC--TTCHHHHHHHHHHHHHHHHHHTCCCSE------EEEEESCHHHHH
T ss_pred cCCccceeecCCCCCCCHHHHHHhhccc---cc--cccHHHHHHHHHHHHHHHHHhCCCCCc------EEEECCCcHHHH
Confidence 3577788888887766666665555432 11 124556678888999999999998652 378888999999
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
..++.+... +++.|+++..+|++ +...++..|+ +++.+|++. ++.+|+++|+++|++..
T Consensus 78 ~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~--- 138 (411)
T 3nnk_A 78 EAILVSAIR-----------PGDKVLVPVFGRFGHLLCEIARRCRA---EVHTIEVPW--GEVFTPDQVEDAVKRIR--- 138 (411)
T ss_dssp HHHHHHHCC-----------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHHC---
T ss_pred HHHHHHhcC-----------CCCEEEEecCCchHHHHHHHHHHcCC---eEEEEecCC--CCCCCHHHHHHHHhhCC---
Confidence 888777632 67788888899988 8888999999 999999975 56899999999998631
Q ss_pred CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceE
Q 038818 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~ 308 (486)
+.+|++++++|++|.+.|+++|+++|++||+|+|+|++++.+....+. .. .++|++++++||++++|.++|+
T Consensus 139 --~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~~-----~~~d~~~~s~~K~l~~~~g~g~ 210 (411)
T 3nnk_A 139 --PRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLET-DV-----WGLDAVSAGMQKCLGGPSGTSP 210 (411)
T ss_dssp --CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCT-TT-----TTCSEEECCSTTTTCCCSSEEE
T ss_pred --CeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccch-hc-----cCCcEEEecCccccCCCCceEE
Confidence 447889999999999999999999999999999999998765443221 11 1689999999999999999999
Q ss_pred EEeeCchHHHHHhcC---CcccccCccCC---CCCccCCCC----------cccc-CCCC-CCchHHHHHHHHhchHHHH
Q 038818 309 LWVKNPNALIKALST---NPEFLRNKASD---SKQVVDYKD----------WQIT-LSRR-FRALKLWLVLRSFGVANLR 370 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~---~~~y~~~~~~~---~~~~~~~~~----------~~~~-~sr~-~~~l~~~~~l~~~g~~g~~ 370 (486)
++++++.. ...... .+.|....... ......+.+ .... .+.. ....++..++..+..+|++
T Consensus 211 ~~~~~~~~-~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~ 289 (411)
T 3nnk_A 211 ITLSARME-EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLD 289 (411)
T ss_dssp EEECHHHH-HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred EEECHHHH-HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 99876532 222111 12222111000 000000000 0001 1111 1123445556656666788
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeee
Q 038818 371 NFLRSHVRMAQLFQELVGGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHG 446 (486)
Q Consensus 371 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 446 (486)
++.++..++++++.+.|+++ ++++..++. ..+++|.+.... + ..++.+.|.++ |+.+..+.
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~l~~~l~~~~gi~v~~g~ 354 (411)
T 3nnk_A 290 YGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGI------------N--GDQARKLMLEDFGIEIGTSF 354 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTC------------C--HHHHHHHHHHHHSEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCC------------C--HHHHHHHHHHhcCeEEeCcc
Confidence 99999999999999999987 788765432 456777764211 0 23566666665 87543332
Q ss_pred eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 447 MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 447 ~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...+..++|++++.+.++++||+++++.|+++++++
T Consensus 355 ~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 355 GPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 222346899998667778999999999999998764
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-29 Score=252.08 Aligned_cols=378 Identities=14% Similarity=0.110 Sum_probs=242.2
Q ss_pred ChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHH--HhhcCCC-ccccccChh
Q 038818 34 EPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEML--SSGFNVV-GFNWMSSPA 110 (486)
Q Consensus 34 ~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l--~~~~n~~-~~~~~~~~~ 110 (486)
-|+.++.. +..+| +|.++.++++++.....++.. ..-.|++.-..+...|..+.+++ ...+... ....+.++.
T Consensus 30 ~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g 105 (438)
T 1wyu_A 30 LPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP--AHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQG 105 (438)
T ss_dssp SCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC--CTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHH
T ss_pred CcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC--ccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhh
Confidence 36778777 88899 889999999999876554422 01112222111122334444443 2222211 111135677
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH-
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA- 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~- 189 (486)
..+++.++++++++++|++.. ++++++|||.++..++.+.+.. +++.|+++..+|++...++
T Consensus 106 ~~~~~~~~~~~la~~~g~~~~-------~i~~~~g~taa~ea~~~a~~~~----------~gd~Viv~~~~h~s~~~~~~ 168 (438)
T 1wyu_A 106 VLQATFEYQTMIAELAGLEIA-------NASMYDGATALAEGVLLALRET----------GRMGVLVSQGVHPEYRAVLR 168 (438)
T ss_dssp HHHHHHHHHHHHHHHHTSSEE-------CSCBSSHHHHHHHHHHHHHHHH----------TCCEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcc-------ceEEeCcHHHHHHHHHHHHhcC----------CCCEEEEcCccCHhHHHHHH
Confidence 788999999999999999754 5789999984443333332221 5678889999999977554
Q ss_pred ---HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 190 ---QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 190 ---~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
+..|+ +++.+|++ ++.+|+++ |++ .+.+|+++++ |++|.++|+++|+++|+++|+|+|+|
T Consensus 169 ~~a~~~G~---~v~~v~~~---~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd 231 (438)
T 1wyu_A 169 AYLEAVGA---KLLTLPLE---GGRTPLPE----VGE------EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAV 231 (438)
T ss_dssp HHHHHTTC---EEEEECCB---TTBCCCCC----CCT------TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCC---EEEEEcCc---CCccCHHH----hCC------CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEE
Confidence 45798 99999873 45888776 332 2567888888 99999999999999999999999966
Q ss_pred cc-ccchhccCccchhhhcCCCCCCceeecccc-----ccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 267 AA-YAGSACICPEFRHFIDGIEGADSFSLNAHK-----WFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 267 ~a-~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK-----~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
+. ++.+.+..+ .. .++|++++++|| |+++| ++|+++++++ ... . .+.++.+...+..+...
T Consensus 232 ~d~~a~g~~~~~--~~-----~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~~-~---l~~~~~g~~~~~~~~~~ 298 (438)
T 1wyu_A 232 ADPLSLGVLKPP--GA-----YGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FVR-Q---LPGRLVSETVDVEGRRG 298 (438)
T ss_dssp CCTTGGGTBCCH--HH-----HTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GGG-G---CCSCCEEEEEBTTSCEE
T ss_pred echhhccCcCCC--cc-----CCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HHH-h---CCCceeccccccCCCcc
Confidence 44 322222222 11 268999999888 67788 8999998765 221 1 12222111000000000
Q ss_pred CC------Cc--cc-cCCCCC---Cc-hHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEE
Q 038818 341 YK------DW--QI-TLSRRF---RA-LKL--WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVV 404 (486)
Q Consensus 341 ~~------~~--~~-~~sr~~---~~-l~~--~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v 404 (486)
+. .. .. ..+... .. .++ +..+..++.+|++++.++..++++++.+.|++++++++..+ +.+..+
T Consensus 299 ~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 378 (438)
T 1wyu_A 299 FILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEF 378 (438)
T ss_dssp EEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEE
T ss_pred eeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEE
Confidence 00 00 00 011111 11 233 33377788899999999999999999999999999998765 344556
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEE-EeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLY-VSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+|+.... ...+.++|.++|+.+ +.+..+.+..++|++++ +.+|++|+++++++|++++
T Consensus 379 ~~~~~~~----------------~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~-~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 379 ALALPKD----------------PEAVRRALAERGFHGATPVPREYGENLALFAAT-ELHEEEDLLALREALKEVL 437 (438)
T ss_dssp EEECSSC----------------HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECC-TTCCHHHHHHHHHHHHHHC
T ss_pred EEeCCCC----------------HHHHHHHHHHCCceeccccccccCCCeEEEEec-ccCCHHHHHHHHHHHHHHh
Confidence 6654211 245677777778743 13333234678999995 6788999999999998753
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=250.98 Aligned_cols=357 Identities=14% Similarity=0.080 Sum_probs=240.9
Q ss_pred CCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceE-EcCCchHH
Q 038818 71 WQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGV-IQGTTCEA 149 (486)
Q Consensus 71 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~-~t~ggt~a 149 (486)
..+|.++.+.|++...+..+.+.+... ... ..++...++..++++++++++|.+.. ..+ +++|||+|
T Consensus 7 ~~~~~~~~~~p~p~~~~~~v~~a~~~~---~~~--~~~~~~~~~~~~l~~~la~~~g~~~~-------~~~~~~~s~t~a 74 (416)
T 3isl_A 7 LCTPLRTIMTPGPVEVDPRVLRVMSTP---VVG--QFDPAFTGIMNETMEMLRELFQTKNR-------WAYPIDGTSRAG 74 (416)
T ss_dssp CCCCCCEECSSSSCCCCHHHHHHTTSC---CCC--TTSHHHHHHHHHHHHHHHHHTTCCCS-------EEEEEESCHHHH
T ss_pred cCcccceeecCCCcCcCHHHHHHhccc---CCC--CccHHHHHHHHHHHHHHHHHhCCCCC-------cEEEecCcHHHH
Confidence 446677777777666555555544331 111 23345577888999999999998765 344 88999999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~ 227 (486)
+..++.+... +++.|+++..+|++ +.++++..|+ +++.+|+++ ++.+|+++|+++|++..
T Consensus 75 l~~~~~~l~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~-- 136 (416)
T 3isl_A 75 IEAVLASVIE-----------PEDDVLIPIYGRFGYLLTEIAERYGA---NVHMLECEW--GTVFDPEDIIREIKKVK-- 136 (416)
T ss_dssp HHHHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHHC--
T ss_pred HHHHHHHhcC-----------CCCEEEEecCCcccHHHHHHHHhcCC---eeEEEecCC--CCCCCHHHHHHHHhhCC--
Confidence 9877776532 66778888899998 7788999999 999999986 46899999999998532
Q ss_pred CCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcce
Q 038818 228 GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCC 307 (486)
Q Consensus 228 g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g 307 (486)
+.+|++++++|++|.+.|+++|+++|++||+++|+|++|+.+....+. .. .++|+++.++|||+++|.|+|
T Consensus 137 ---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-~~-----~~~d~~~~s~~K~l~g~~g~g 207 (416)
T 3isl_A 137 ---PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKV-DE-----WKIDAAIGGTQKCLSVPSGMA 207 (416)
T ss_dssp ---CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCT-TT-----TTCSEEECCSSSTTCCCSSEE
T ss_pred ---CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcch-hh-----cCCCEEEecCccccCCCCCeE
Confidence 347899999999999999999999999999999999999755443221 11 168999999999999999999
Q ss_pred EEEeeCchHHHHHhcCC---cc--------cccCccCCCCCccCC-------CCccccC-CCC-CCchHHHHHHHHhchH
Q 038818 308 CLWVKNPNALIKALSTN---PE--------FLRNKASDSKQVVDY-------KDWQITL-SRR-FRALKLWLVLRSFGVA 367 (486)
Q Consensus 308 ~~~~~~~~~~~~~~~~~---~~--------y~~~~~~~~~~~~~~-------~~~~~~~-sr~-~~~l~~~~~l~~~g~~ 367 (486)
+++++++.. ....... .+ +............+. ....+.. +.. ....++..++..+...
T Consensus 208 ~~~~~~~~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 286 (416)
T 3isl_A 208 PITYNERVA-DVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE 286 (416)
T ss_dssp EEEECHHHH-HHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHH-HHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 998876532 2221110 00 000000000000000 0001111 111 1123445566655556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEE
Q 038818 368 NLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYV 443 (486)
Q Consensus 368 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 443 (486)
+++++.++..++++++.+.|++. ++++..++. ..+++|.+.... + ..++.+.|.++ |+.+.
T Consensus 287 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~l~~~L~~~~gi~v~ 351 (416)
T 3isl_A 287 GLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI------------D--GESVRDMLLAQFGIEIA 351 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC------------C--HHHHHHHHHHHHCEECB
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC------------C--HHHHHHHHHHhCCEEEe
Confidence 68899999999999999999986 888765532 357777764211 1 24566777666 86433
Q ss_pred eeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 444 SHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 444 ~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+....+..++|++++...+++++|+++++.|+++++++
T Consensus 352 ~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 352 SSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp CCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 222112356899999666667756999999999998765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=243.09 Aligned_cols=343 Identities=12% Similarity=0.115 Sum_probs=235.4
Q ss_pred cceecCCCCCHHHHHHHH---HHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEM---LSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILC 152 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~---l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 152 (486)
|+++..+++.++.++..+ +...+......|..+.....+..++++++++++|.+.+ .+++|+|||+|+..
T Consensus 3 yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~i~~~~g~~~a~~~ 75 (382)
T 4hvk_A 3 YFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG-------TVVFTSGATEANNL 75 (382)
T ss_dssp BCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE-------EEEEESSHHHHHHH
T ss_pred eecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC-------eEEEECCchHHHHH
Confidence 556655555555444332 22222211223444455677888999999999999764 68999999999988
Q ss_pred HHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH---cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 153 TLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI---AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 153 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~---~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
++.+......+ +++.|+++..+|+++..++.. .|+ +++.+|+++ ++.+|+++|++++++.
T Consensus 76 ~~~~~~~~~~~-------~gd~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~----- 138 (382)
T 4hvk_A 76 AIIGYAMRNAR-------KGKHILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGK--YGEVDVSFIDQKLRDD----- 138 (382)
T ss_dssp HHHHHHHHHGG-------GCCEEEEETTCCHHHHHHHHHHHHTTC---EEEEECBCT--TSCBCHHHHHHHCCTT-----
T ss_pred HHHHhhhhhcC-------CCCEEEECCCCcHHHHHHHHHHHhcCC---EEEEeccCC--CCCcCHHHHHHHhccC-----
Confidence 88876531101 577888999999998887666 488 999999985 5699999999998653
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEE
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCL 309 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~ 309 (486)
+.+|+++.++|++|.+.|+++|.++|++||+ +|+|++|+.+....+ ... .++|+++.++||++ +|.|+|++
T Consensus 139 -~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~-~~~-----~~~d~~~~s~~K~~-g~~g~g~~ 209 (382)
T 4hvk_A 139 -TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVD-VEK-----IGADMLTISSNDIY-GPKGVGAL 209 (382)
T ss_dssp -EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCC-HHH-----HTCSEEEEESGGGT-SCTTCEEE
T ss_pred -ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCC-chh-----cCCCEEEEeHHHhc-CCCceEEE
Confidence 4589999999999999999999999999999 999999976554332 111 16899999999975 57789999
Q ss_pred EeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC-C-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 038818 310 WVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR-R-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELV 387 (486)
Q Consensus 310 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr-~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L 387 (486)
+++++.. .. +++..... ......+. . ....++..++. +..++++++.++..++++++.+.|
T Consensus 210 ~~~~~~~------~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L 272 (382)
T 4hvk_A 210 WIRKEAK------LQ-PVILGGGQ---------ENGLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNV 272 (382)
T ss_dssp EEETTCC------CC-CSSCSSCT---------GGGTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCccC------cC-cccccCCC---------cCccccCCcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9987631 11 11111100 00001110 1 11122233333 234688899999999999999999
Q ss_pred hCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-------------C-
Q 038818 388 GGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-------------G- 450 (486)
Q Consensus 388 ~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------~- 450 (486)
+++|++++..++. .++++|.+.... ...+.+.|.++|+.+..+.... +
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~ 337 (382)
T 4hvk_A 273 LKIEESYLNGHPEKRLPNNVNVRFSYIE---------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGL 337 (382)
T ss_dssp TTSTTEEECSCSSSBCTTEEEEEETTCC---------------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTC
T ss_pred hcCCCeEEeCCccccCCCEEEEEECCCC---------------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCC
Confidence 9999999875542 247778775321 2356667777787432221110 0
Q ss_pred -----EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 451 -----IYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 451 -----~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
..++|+++. +.++++|++++++.|+++++++.+
T Consensus 338 ~~~~~~~~iRl~~~-~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 338 KHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCeEEEEcC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999995 577888999999999999887654
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=236.33 Aligned_cols=388 Identities=12% Similarity=0.075 Sum_probs=246.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCC----CCHHHHHHHH---HHhhcCCCccccccChh------
Q 038818 44 ESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSS----GSIAGFLGEM---LSSGFNVVGFNWMSSPA------ 110 (486)
Q Consensus 44 ~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~---l~~~~n~~~~~~~~~~~------ 110 (486)
..+|++|-+.+.|---|.++-.-. +-+|.+.+--+ --...++... +....+.++.--+.-|.
T Consensus 39 r~~P~~g~~d~~ie~~l~~la~md-----snn~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssl 113 (501)
T 3hl2_A 39 GKCPENGWDESTLELFLHELAIMD-----SNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL 113 (501)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTTB-----GGGCSSCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHhhc-----cCCCcccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHH
Confidence 479999999888776666543222 22344443211 1122222221 12223333322222221
Q ss_pred -hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 111 -ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 111 -~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
...-|..+.+||+.+ |+|... ..++++|+|-+++..+.++..... .+...|+++..+|.|+.+++
T Consensus 114 l~~ltn~l~ld~L~~~-G~~~~~------~~flVnGsTgg~lamilaa~r~~r-------pg~d~VIvpRn~HKSv~kAl 179 (501)
T 3hl2_A 114 LNKITNSLVLDIIKLA-GVHTVA------NCFVVPMATGMSLTLCFLTLRHKR-------PKAKYIIWPRIDQKSCFKSM 179 (501)
T ss_dssp HHHHHHHHHHHHHHHT-TCTTCC------EEEEESSCHHHHHHHHHHHHHHHC-------TTCCEEEEECCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCCCC------cEEEECcHHHHHHHHHHHHcCccc-------CCCCEEEEecchHHHHHHHH
Confidence 234566777888888 999753 678899999666666555544310 02367778999999999999
Q ss_pred HHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc-ccccCCchHHHHHHHHhCceEEeec
Q 038818 190 QIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA-ITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~-~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
.++|+ .+++|+... ++.+.+|++.|+++|++.. ...++++++..++. .|.++||++|+++|++||+|+|||+
T Consensus 180 iL~Gl---~Pv~V~p~~d~~~~~id~e~le~aI~e~g---a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDe 253 (501)
T 3hl2_A 180 ITAGF---EPVVIENVLEGDELRTDLKAVEAKVQELG---PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNN 253 (501)
T ss_dssp HHTTC---EEEEECEEEETTEEEECHHHHHHHHHHHC---GGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHcCC---eEEEEeeeecccccCCCHHHHHHHHHhcC---CCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeC
Confidence 99999 888887621 1257999999999999862 12334444444333 4577999999999999999999999
Q ss_pred cccchhccCccchh-hhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 268 AYAGSACICPEFRH-FIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 268 a~g~~~~~~~~~~~-~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
|||+.+.+.+.... .+. +.+||.++.|+||++.+|.|++++++++++.+.+... .|....
T Consensus 254 AhGah~~~~~~lp~sA~~-~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yPGr~--------------- 314 (501)
T 3hl2_A 254 AYGVQSSKCMHLIQQGAR-VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYPGRA--------------- 314 (501)
T ss_dssp TTCTTCHHHHHHHHHHHH-HSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSCSCB---------------
T ss_pred cchhhhhhhhhhHHHHHh-cCCCcEEEecccccceeecCceEEEeCCHHHHHHHHH---hCCCCC---------------
Confidence 99997755543221 122 2249999999999999999999999999877654322 221100
Q ss_pred cCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCC-CeeEEEEEeecCCCCCCCCCCcc
Q 038818 347 TLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPR-NFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 347 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
..+.++.+|+++..+|.+||+++++++.+++++|+++|+++. +-+++..+ ....+++.+..... ....
T Consensus 315 ---S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~-----~~~~ 386 (501)
T 3hl2_A 315 ---SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE-----HRDK 386 (501)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT-----TTSC
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccc-----cccc
Confidence 023568899999999999999999999999999999998753 34555444 22234444432210 0011
Q ss_pred chHHHHHHHHHHHHhcCcEEEeee--------eEC---------CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 423 GANELNRKLLESINASGQLYVSHG--------MVA---------GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~--------~~~---------~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
....+...|+.+- -+|.=++.++ .+. ...++=++. ...++++|||.+++.|+++..++.++
T Consensus 387 ~~t~~gs~Lf~r~-vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~-aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 387 AVTQLGSMLFTRQ-VSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAAS-AIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp HHHHHHHHHHHTT-CCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHhcC-CCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2223333333321 1222123222 111 134566654 56889999999999999999877543
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=244.52 Aligned_cols=358 Identities=11% Similarity=0.037 Sum_probs=240.3
Q ss_pred CCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 72 QSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
..|+++.+.+++...+..+.+.+..... . ...+....+..++++++++++|.+... .+++|+|||+|+.
T Consensus 20 ~~~~~~~~~p~p~~~~~~v~~a~~~~~~---~--~~~~~~~~~~~~l~~~la~~~~~~~~~------~v~~~~gg~~al~ 88 (393)
T 3kgw_A 20 SVPTRLLLGPGPSNLAPRVLAAGSLRMI---G--HMQKEMLQIMEEIKQGIQYVFQTRNPL------TLVVSGSGHCAME 88 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHTTCCCC---C--TTSHHHHHHHHHHHHHHHHHHTCCCSE------EEEESCCTTTHHH
T ss_pred CCccceeccCCCCCCCHHHHHHhccccc---C--cccHHHHHHHHHHHHHHHHHhCCCCCc------EEEEeCCcHHHHH
Confidence 3567778888776666656555544221 1 123455677788999999999987542 4789999999998
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
.++.+... +++.|+++..+|++ +...++..|. +++.+|+++ ++.+|+++|+++|++..
T Consensus 89 ~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~i~~~~---- 148 (393)
T 3kgw_A 89 TALFNLLE-----------PGDSFLTGTNGIWGMRAAEIADRIGA---RVHQMIKKP--GEHYTLQEVEEGLAQHK---- 148 (393)
T ss_dssp HHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHHC----
T ss_pred HHHHhcCC-----------CCCEEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHHHHHhhCC----
Confidence 88776633 56677777778864 4778888999 999999975 45899999999998731
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEE
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCL 309 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~ 309 (486)
+.+|+++.++|++|.+.|+++|.++|++||+|+++|++|+.+....+. .. .++|.+++++||++++|.|+|++
T Consensus 149 -~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~~-----~~~d~~~~s~sK~~~~~~g~g~~ 221 (393)
T 3kgw_A 149 -PVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYM-DQ-----QGIDIMYSSSQKVLNAPPGISLI 221 (393)
T ss_dssp -CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCT-TT-----TTCCEEEEESSSTTCCCSSCEEE
T ss_pred -CcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccch-hh-----cCCCEEEecCcccccCCCceeEE
Confidence 347899999999999999999999999999999999999744332211 11 26899999999999988899999
Q ss_pred EeeCchHHHHHhcCCc---ccccCccC--CCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 038818 310 WVKNPNALIKALSTNP---EFLRNKAS--DSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 310 ~~~~~~~~~~~~~~~~---~y~~~~~~--~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l 383 (486)
+++++. ......... .+...... ...+......+. ..+.. ....++..++..+..++++++.++..++++++
T Consensus 222 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 299 (393)
T 3kgw_A 222 SFNDKA-KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVI-HHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHL 299 (393)
T ss_dssp EECHHH-HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCC-CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EECHHH-HHHHhccCCCCCceeecHHHHHHhhhhccccCCC-CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 987653 222211111 11000000 000000000000 01111 11234445555555667889999999999999
Q ss_pred HHHHhCCCCeEEecCCC----eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEe
Q 038818 384 QELVGGDNRFEIVAPRN----FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAV 458 (486)
Q Consensus 384 ~~~L~~~~~~~~~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~ 458 (486)
.+.|+++ ++++..++. ..+++|.+.... ...++.+.|.++ |+.+..+....+..++|+++
T Consensus 300 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~ 364 (393)
T 3kgw_A 300 HKHLQEM-GLKFFVKDPEIRLPTITTVTVPAGY--------------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGL 364 (393)
T ss_dssp HHHHHHT-TCCBSSSSGGGBCSSEEEEECCTTB--------------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEEC
T ss_pred HHHHHHc-CCeeccCChhhcCCeEEEEeCCCCC--------------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEe
Confidence 9999988 787763321 244556654210 123566777666 86433322223456899998
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 459 GATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 459 ~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+...++++|++++++.|+++++++.+
T Consensus 365 ~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 365 LGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred cccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 55567889999999999999987654
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=242.48 Aligned_cols=351 Identities=13% Similarity=0.060 Sum_probs=238.4
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHH
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCT 153 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~a 153 (486)
..|+.+...+...+. +.+.+...+.. .| ++....+..++.+++++++|.+.. ..+++|+|||+|+..+
T Consensus 20 ~~~l~~~~~~~~~~~-v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~------~~v~~~~g~t~a~~~~ 87 (386)
T 2dr1_A 20 KYKLFTAGPVACFPE-VLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEKG------EVLLVPSSGTGIMEAS 87 (386)
T ss_dssp CSEECCSSSCCCCHH-HHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSSS------EEEEESSCHHHHHHHH
T ss_pred cceeecCCCcCCcHH-HHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCC------cEEEEeCChHHHHHHH
Confidence 356666443334444 44444444321 22 344578888999999999999721 1588999999999888
Q ss_pred HHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 154 LAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 154 l~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
+.+... +++.|+++..+|++ +..+++..|+ +++.+|+++ ++.+|+++|++++++. ..+
T Consensus 88 ~~~l~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~----~~~ 147 (386)
T 2dr1_A 88 IRNGVS-----------KGGKVLVTIIGAFGKRYKEVVESNGR---KAVVLEYEP--GKAVKPEDLDDALRKN----PDV 147 (386)
T ss_dssp HHHHSC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHC----TTC
T ss_pred HHHhhc-----------CCCeEEEEcCCchhHHHHHHHHHhCC---ceEEEecCC--CCCCCHHHHHHHHhcC----CCC
Confidence 776532 56778888899998 8888999999 999999975 5689999999999652 124
Q ss_pred EEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEe
Q 038818 232 LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWV 311 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~ 311 (486)
.+|+++.++|++|.+.|+++|.++|++||+++|+|++|+.+....+ +... ++|+++.++||++++|.|+|++++
T Consensus 148 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~di~~~s~sK~~~~~~g~G~~~~ 221 (386)
T 2dr1_A 148 EAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIK-----FDKW-GLDVVFSSSQKAFGVPPGLAIGAF 221 (386)
T ss_dssp CEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCSEEEEETTSTTCCCSSCEEEEE
T ss_pred cEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccc-----cccc-CCcEEEEeccccccCCCceEEEEE
Confidence 5788889999999999999999999999999999999986544221 1111 579999999999999888999998
Q ss_pred eCchHHHHHhcC--CcccccCccCCCCCccCCC-CccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHH
Q 038818 312 KNPNALIKALST--NPEFLRNKASDSKQVVDYK-DWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 312 ~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~-~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~ 386 (486)
+++ ... .+.. ..++...... ...... ......+.. ....++..+++.+... +++++.++..++++++.+.
T Consensus 222 ~~~-~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~ 296 (386)
T 2dr1_A 222 SER-FLE-IAEKMPERGWYFDIPL---YVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREG 296 (386)
T ss_dssp CHH-HHH-HHTTCTTCCSTTCHHH---HHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHH-HHH-HHhcCCCCceEEeHHH---HHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 754 322 2211 0111000000 000000 000001111 1123444555555444 6788999999999999999
Q ss_pred HhCCCCeEEecCC---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCC
Q 038818 387 VGGDNRFEIVAPR---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLT 463 (486)
Q Consensus 387 L~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~t 463 (486)
|+++ ++++..++ ..++++|.+.... ...++.+.|.++|+.+..+....+..++|+++. ..+
T Consensus 297 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~-~~~ 360 (386)
T 2dr1_A 297 VREI-GLDILAEPGHESPTITAVLTPPGI--------------KGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHM-GYM 360 (386)
T ss_dssp HHHT-TCCBSSCTTCBCSSEEEEECCTTC--------------CHHHHHHHHHHTTEECEECCGGGTTTEEEEECC-SSC
T ss_pred HHHc-CCeeCcCccccCCceEEEEcCCCC--------------CHHHHHHHHHHCCeEEecCccccCCCEEEEECC-CCC
Confidence 9988 78776543 3567777764211 134567777777875433322223468999995 467
Q ss_pred cHHHHHHHHHHHHHHHHHHh
Q 038818 464 EDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 464 t~~did~~i~~l~~~~~~l~ 483 (486)
+++|++++++.|+++++++.
T Consensus 361 ~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 361 KFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 88899999999999987653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=241.59 Aligned_cols=356 Identities=12% Similarity=0.045 Sum_probs=234.0
Q ss_pred CCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHH
Q 038818 73 SPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILC 152 (486)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 152 (486)
.++.+.+.+++...+..+.+.+...+.. .| ++.......++++++++++|.+... .+++|+|||+|+..
T Consensus 17 ~~~~~~~~~g~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~g~~~~~------~i~~~~g~t~a~~~ 85 (393)
T 2huf_A 17 TPNKLLMGPGPSNAPQRVLDAMSRPILG---HL--HPETLKIMDDIKEGVRYLFQTNNIA------TFCLSASGHGGMEA 85 (393)
T ss_dssp CCCCEECSSSCCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCSE------EEEESSCHHHHHHH
T ss_pred CCCeEEecCCCCCCCHHHHHHHHhhhcc---CC--CHHHHHHHHHHHHHHHHHhCCCCCc------EEEEcCcHHHHHHH
Confidence 3445555555544445555555554432 22 3445677788999999999986531 57899999999988
Q ss_pred HHHHHHHHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 153 TLAAARDQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 153 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
++.+... +++.|+++..+|++. .+.++..|+ +++.+|+++ ++.+|+++|+++|++. .
T Consensus 86 ~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~-----~ 144 (393)
T 2huf_A 86 TLCNLLE-----------DGDVILIGHTGHWGDRSADMATRYGA---DVRVVKSKV--GQSLSLDEIRDALLIH-----K 144 (393)
T ss_dssp HHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHH-----C
T ss_pred HHHHHhC-----------CCCEEEEECCCcchHHHHHHHHHcCC---eeEEEeCCC--CCCCCHHHHHHHHhcc-----C
Confidence 8877632 566788888889883 345566788 999999975 4689999999999863 1
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
+.+|++++++|++|.+.|+++|.++|++||+++|+|++++.+....+ +.. .++|+++.++||++++|.|+|+++
T Consensus 145 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~-~~~d~~~~s~sK~l~g~~G~G~~~ 218 (393)
T 2huf_A 145 PSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMF-----MDR-WEIDAMYTGSQKVLGAPPGITPVS 218 (393)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTT-TTCSEEECCSSSTTCCCSSCEEEE
T ss_pred CcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcc-----hhh-cCccEEEECCCcccccCCCeEEEE
Confidence 34788899999999999999999999999999999999865433221 111 158999999999998888999998
Q ss_pred eeCchHHHHHhcC---CcccccCccC--CCCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 038818 311 VKNPNALIKALST---NPEFLRNKAS--DSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 311 ~~~~~~~~~~~~~---~~~y~~~~~~--~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~ 384 (486)
+++ +........ ..+|...... ..........+. .++... ...++..+++.+..+++.++.++..++++++.
T Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 296 (393)
T 2huf_A 219 FSH-RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIY-HHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLY 296 (393)
T ss_dssp ECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC-SCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ECH-HHHHHHhhcCCCCceEEEchHHHHhhhccccccCCC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 864 333322221 1222211000 000000000000 011111 11223335555444568888999999999999
Q ss_pred HHHhCCCCeEEecCC--Cee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecC
Q 038818 385 ELVGGDNRFEIVAPR--NFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGA 460 (486)
Q Consensus 385 ~~L~~~~~~~~~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~ 460 (486)
+.|+++ ++++..++ ..+ +++|.+.... + ..++.+.|.++ |+.+..+....+..++|++++.
T Consensus 297 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~ 361 (393)
T 2huf_A 297 RGLQDA-GFELYADPKDRLSTVTTIKVPQGV------------D--WLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMG 361 (393)
T ss_dssp HHHHHT-TCCBSSCGGGBCTTEEEEECCTTC------------C--HHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCG
T ss_pred HHHHHc-CCeeccCccccCCcEEEEEcCCCC------------C--HHHHHHHHHHhCCEEEecCcccccCCEEEEEccc
Confidence 999988 88776443 233 6677764210 1 23566666654 7643222222245689999965
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.+++++++++++.|+++++++.
T Consensus 362 ~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 362 QNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHHHHHcC
Confidence 66788899999999999987764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=239.62 Aligned_cols=353 Identities=12% Similarity=0.048 Sum_probs=235.7
Q ss_pred CCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHH
Q 038818 73 SPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILC 152 (486)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 152 (486)
++.|+++....+.++. +.+.+...+.. ..++.......++++++++++|.+++ .+++|+|||+|+..
T Consensus 8 ~~~yl~~~~~~~~~~~-v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~t~g~t~a~~~ 74 (392)
T 2z9v_A 8 DPVITLTAGPVNAYPE-VLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSNK-------PVILHGEPVLGLEA 74 (392)
T ss_dssp CCSEECSSSCCCCCHH-HHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSSC-------CEEESSCTHHHHHH
T ss_pred CcceeecCCCcCCCHH-HHHHHhccccc-----cccHHHHHHHHHHHHHHHHHhCCCCC-------EEEEeCCchHHHHH
Confidence 4567776544444444 44444444432 12345566777899999999998754 68999999999988
Q ss_pred HHHHHHHHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 153 TLAAARDQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 153 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
++.+... +++.|+++..+|++. ...++..|+ +++.+|+++ ++.+|+++|++++++. ..
T Consensus 75 ~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~----~~ 134 (392)
T 2z9v_A 75 AAASLIS-----------PDDVVLNLASGVYGKGFGYWAKRYSP---HLLEIEVPY--NEAIDPQAVADMLKAH----PE 134 (392)
T ss_dssp HHHHHCC-----------TTCCEEEEESSHHHHHHHHHHHHHCS---CEEEEECCT--TSCCCHHHHHHHHHHC----TT
T ss_pred HHHHhcC-----------CCCEEEEecCCcccHHHHHHHHHcCC---ceEEeeCCC--CCCCCHHHHHHHHhcC----CC
Confidence 8777632 556688888899875 344566798 999999985 4589999999999742 12
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
+.+|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+ ... . ++|+++.++||++++|.|+|+++
T Consensus 135 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~----~-~~d~~~~s~sK~~~~~~g~G~l~ 208 (392)
T 2z9v_A 135 ITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTH-PED----C-KADIYVTGPNKCLGAPPGLTMMG 208 (392)
T ss_dssp CCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCC-GGG----G-TCSEEEECSSSTTCCCSCCEEEE
T ss_pred CcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccc-ccc----c-cceEEEecCcccccCCCceeEEE
Confidence 45788999999999999999999999999999999999976443222 111 1 58999999999999998999999
Q ss_pred eeCchHHHHHhcCC--cc-cccCccCCCCCccCCCCccc-cCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 038818 311 VKNPNALIKALSTN--PE-FLRNKASDSKQVVDYKDWQI-TLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 311 ~~~~~~~~~~~~~~--~~-y~~~~~~~~~~~~~~~~~~~-~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 385 (486)
++++ ......... ++ +..+..... . .+..... .++... ...++..++..+...|++++.++..++++++.+
T Consensus 209 ~~~~-~~~~l~~~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~ 284 (392)
T 2z9v_A 209 VSER-AWAKMKANPLAPRASMLSIVDWE-N--AWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRA 284 (392)
T ss_dssp ECHH-HHHHHHTCTTSCCSSTTCSGGGT-T--TTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ECHH-HHHHhhhccCCCCceeccHHHHH-h--hhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 8754 222221111 11 111100000 0 0000000 111111 112344555555455688889999999999999
Q ss_pred HHhCCCCeEEecCC----CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecC
Q 038818 386 LVGGDNRFEIVAPR----NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGA 460 (486)
Q Consensus 386 ~L~~~~~~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~ 460 (486)
.|+++ ++++..++ ..++++|++.... + ..++.+.|.++ |+.+..+....+..++|+++..
T Consensus 285 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~ 349 (392)
T 2z9v_A 285 GVTAM-GLSVWAASDSIASPTTTAVRTPDGV------------D--EKALRQAARARYGVVFSSGRGETLGKLTRIGHMG 349 (392)
T ss_dssp HHHHT-TCCBSSSSGGGBCTTEEEEECCTTC------------C--HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCG
T ss_pred HHHHc-CCeeccCCccccCCceEEEECCCCC------------C--HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcc
Confidence 99887 88876523 3466777764210 1 23567777776 8754433222345689999644
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.++++|++++++.|+++++++.
T Consensus 350 ~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 350 PTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHHHHHHHcC
Confidence 47788899999999999887653
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=236.23 Aligned_cols=342 Identities=12% Similarity=0.096 Sum_probs=231.6
Q ss_pred cceecCCCCCHHHHHHHHHHhhcCC---C-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGFNV---V-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~n~---~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
|+++..+++.++.++..+ ...+.. + ...|..++.......++++++++++|.+++ .+++|+|||+|+.
T Consensus 3 yld~~~~~~~~~~v~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~ 74 (382)
T 4eb5_A 3 YFDYTSAKPVDERILEAM-LPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG-------TVVFTSGATEANN 74 (382)
T ss_dssp BCBTTTCCCCCHHHHHHH-HHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE-------EEEEESSHHHHHH
T ss_pred eeccCCCCCCCHHHHHHH-HHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEcCchHHHHH
Confidence 556555455555544333 222211 1 112444455667888899999999998754 6899999999999
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH---cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI---AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~---~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
.++.+.+..+. + +++.|+++..+|+++..++.. .|+ +++.+|+++ ++.+|+++|+++|+++
T Consensus 75 ~~~~~l~~~~~-~------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~---- 138 (382)
T 4eb5_A 75 LAIIGYAMRNA-R------KGKHILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGK--YGEVDVSFIDQKLRDD---- 138 (382)
T ss_dssp HHHHHHHHHHG-G------GCCEEEEETTCCHHHHHHHHHHTTTTC---EEEEECBCT--TSCBCHHHHHHHCCTT----
T ss_pred HHHHHHHhhcc-C------CCCEEEECCCcchHHHHHHHHHHhCCc---EEEEeccCC--CCccCHHHHHHHhcCC----
Confidence 88888763210 1 566788999999998887765 477 899999975 5689999999988642
Q ss_pred CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceE
Q 038818 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~ 308 (486)
+.+|++++++|++|.+.|+++|.++|++||++ |+|++|+.+....+ ... . ++|+++.++||++ +|.|+|+
T Consensus 139 --~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~-~~~----~-~~di~~~s~sK~~-g~~g~G~ 208 (382)
T 4eb5_A 139 --TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVD-VEK----I-GADMLTISSNDIY-GPKGVGA 208 (382)
T ss_dssp --EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCC-HHH----H-TCSEEEEETGGGT-CCSSCEE
T ss_pred --CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccC-ccc----c-CCCEEEeehHHhc-CCCceEE
Confidence 45788999999999999999999999999999 99999975432221 111 1 5799999999984 5778999
Q ss_pred EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc-CCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 038818 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT-LSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~ 386 (486)
++++++..+ . +++..... ..... .+... ...++..++..+ .++++++.++..++++++.+.
T Consensus 209 ~~~~~~~~l------~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4eb5_A 209 LWIRKEAKL------Q-PVILGGGQ---------ENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp EEEETTCCC------C-CSSCSSCT---------GGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcccccc------C-ceecCCCc---------cccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Confidence 998875211 1 11111000 00001 11111 112333444433 357888999999999999999
Q ss_pred HhCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE---------------
Q 038818 387 VGGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV--------------- 448 (486)
Q Consensus 387 L~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------------- 448 (486)
|+++|++++..++. .++++|.+.+.. ..++.+.|.+.|+.+..+...
T Consensus 272 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g 336 (382)
T 4eb5_A 272 VLKIEESYLNGHPEKRLPNNVNVRFSYIE---------------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACG 336 (382)
T ss_dssp HTTSTTEEECSCSSSBCTTEEEEEETTSC---------------HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTT
T ss_pred HhhCCCeEEeCCcccCCCCEEEEEeCCcC---------------HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcC
Confidence 99988998875432 457777764211 234566666778743322110
Q ss_pred ----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 449 ----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 449 ----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.+..++|+++ ...++++|++++++.|+++++++.+
T Consensus 337 ~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 337 LKHEEAHGTLLLTL-GRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCHHHHTTEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhccCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0246899997 4577888999999999999877653
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=241.06 Aligned_cols=346 Identities=13% Similarity=0.055 Sum_probs=233.9
Q ss_pred cceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLA 155 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~ 155 (486)
|+....+.+.++. +.+.+...+.. .| ++....+..++.+++++++|.+++. .+++|+|||+|+..++.
T Consensus 36 ~l~~~~~~~~~~~-v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~~------~v~~t~g~t~al~~~~~ 103 (393)
T 1vjo_A 36 LLLGPGPSNAHPS-VLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENPL------TIAVSGTGTAAMEATIA 103 (393)
T ss_dssp EECSSSCCCCCHH-HHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHHHHHH
T ss_pred eeccCCCCCCCHH-HHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCCc------EEEEeCchHHHHHHHHH
Confidence 4444333333343 45555554432 22 3445678889999999999986431 58999999999988887
Q ss_pred HHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEE
Q 038818 156 AARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLF 233 (486)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~ 233 (486)
++.. +++.|+++..+|++ +..+++..|+ +++.+|+++ ++.+|+++|++++++. .+.+
T Consensus 104 ~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~ 162 (393)
T 1vjo_A 104 NAVE-----------PGDVVLIGVAGYFGNRLVDMAGRYGA---DVRTISKPW--GEVFSLEELRTALETH-----RPAI 162 (393)
T ss_dssp HHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHH-----CCSE
T ss_pred hccC-----------CCCEEEEEcCChhHHHHHHHHHHcCC---ceEEEecCC--CCCCCHHHHHHHHhhC-----CceE
Confidence 7643 56678888899998 8899999999 999999985 5689999999999863 1347
Q ss_pred EEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeC
Q 038818 234 LCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKN 313 (486)
Q Consensus 234 vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~ 313 (486)
|+++.++|++|.+.|+++|.++|+++|+++++|++|+.+....+ +.. .++|+++.++||++++|.++|++++++
T Consensus 163 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~-~~~di~~~s~sK~l~~~~~~G~l~~~~ 236 (393)
T 1vjo_A 163 LALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF-----LDA-WGVDLAYSCSQKGLGCSPGASPFTMSS 236 (393)
T ss_dssp EEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC-----TTT-TTCSEEECCSSSTTCSCSSCEEEEECH
T ss_pred EEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCc-----ccc-cCccEEEEcCcccccCCCceEEEEECH
Confidence 88899999999999999999999999999999999984322111 111 267999999999999998999999876
Q ss_pred chHHHHHhcC---CcccccCccCCCCCccCCCCccccC-CCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q 038818 314 PNALIKALST---NPEFLRNKASDSKQVVDYKDWQITL-SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVG 388 (486)
Q Consensus 314 ~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~-sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~ 388 (486)
+ ........ ..++....... .+ + ........ +.. ....++..+++.+..++++++.++..++++++.+.|+
T Consensus 237 ~-~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 312 (393)
T 1vjo_A 237 R-AIEKLQRRRTKVANWYLDMNLL-GK-Y-WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLE 312 (393)
T ss_dssp H-HHHHHHTCSSCCSCSTTCHHHH-HH-H-HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHhccCCCCCceecCcHhh-hh-h-hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 5 22222111 01111100000 00 0 00000111 111 1223445555555455688899999999999999999
Q ss_pred CCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecCCCCc
Q 038818 389 GDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGATLTE 464 (486)
Q Consensus 389 ~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~~~tt 464 (486)
++ ++++..+.. .++++|.+.... + ..++.+.|.++ |+.+..+....+..++|+++..+.++
T Consensus 313 ~~-g~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~ 377 (393)
T 1vjo_A 313 DI-GLSLHVEKEYRLPTLTTVCIPDGV------------D--GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR 377 (393)
T ss_dssp HT-TCCBSSCGGGBCSSEEEEECCTTC------------C--HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCS
T ss_pred Hc-CCcccCCccccCCcEEEEEcCCCC------------C--HHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCCh
Confidence 87 787765432 356777763210 1 24567777776 87544433233457899996556778
Q ss_pred HHHHHHHHHHHHHHH
Q 038818 465 DRHVIAAWKVVQEKL 479 (486)
Q Consensus 465 ~~did~~i~~l~~~~ 479 (486)
+++++++++.|++++
T Consensus 378 ~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 378 KESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999999998865
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-28 Score=246.67 Aligned_cols=358 Identities=11% Similarity=0.071 Sum_probs=237.5
Q ss_pred cceecCCCCC---HHHHHHHHHHhhcCCCcccccc-ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 76 YFAYFPSSGS---IAGFLGEMLSSGFNVVGFNWMS-SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 76 ~~~~~~~~~~---~~~~~~~~l~~~~n~~~~~~~~-~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
|+.....++. ....+.+.+....+.+...|.. .+....+..++++++++++|++++ +.++|+|+|+++.
T Consensus 70 yld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~t~g~t~al~ 142 (465)
T 3e9k_A 70 YFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-------EIALMNALTVNLH 142 (465)
T ss_dssp ECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-------GEEECSCHHHHHH
T ss_pred EecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-------CEEEECCHHHHHH
Confidence 5554443332 3333555554433333333332 233445666789999999999865 7899999999887
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHcCCCCCCe-----EEEecCCCCCcccCHHHHHHHHH
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIAGIDPKNF-----RAIKTTKSSSFTLTPESLQAAID 222 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~G~g~~~v-----~~v~~d~~~~~~~d~~~L~~~l~ 222 (486)
.++.+.... +.++..|+++..+|++ +...++..|+ ++ ..+|.+ +++.+|+++|+++|+
T Consensus 143 ~~~~~~~~~--------~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~---~~~~~~v~~~~~~--~~~~~d~~~l~~~i~ 209 (465)
T 3e9k_A 143 LLMLSFFKP--------TPKRYKILLEAKAFPSDHYAIESQLQLHGL---NIEESMRMIKPRE--GEETLRIEDILEVIE 209 (465)
T ss_dssp HHHHHHCCC--------CSSSCEEEEETTCCHHHHHHHHHHHHHTTC---CHHHHEEEECCCT--TCSSCCHHHHHHHHH
T ss_pred HHHHHhccc--------cCCCCEEEEcCCcCCchHHHHHHHHHHcCC---cceeeeEEEecCC--CCCccCHHHHHHHHH
Confidence 766665321 2245678899999988 4456777888 64 233544 367999999999998
Q ss_pred HHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-
Q 038818 223 LDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF- 301 (486)
Q Consensus 223 ~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~- 301 (486)
+... .+.+|++++++|++|.+.|+++|.++|++||+++|+|+||+.+....+- ... ++|++++++||+++
T Consensus 210 ~~~~---~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~-~~~-----~~D~~~~s~~K~l~~ 280 (465)
T 3e9k_A 210 KEGD---SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYL-HDW-----GVDFACWCSYKYLNA 280 (465)
T ss_dssp HHGG---GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH-HHH-----TCCEEEECSSSTTCC
T ss_pred hcCC---CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCch-hhc-----CCCEEEECccccccc
Confidence 6421 3568999999999999999999999999999999999999877654431 111 78999999999995
Q ss_pred CCCcceEEEeeCchHHHHHhcCCcccccCcc-CCC----CCccCCCCccccCCCC--CCchHHHHHHHHhchHHHHHHHH
Q 038818 302 TTLDCCCLWVKNPNALIKALSTNPEFLRNKA-SDS----KQVVDYKDWQITLSRR--FRALKLWLVLRSFGVANLRNFLR 374 (486)
Q Consensus 302 ~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~-~~~----~~~~~~~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~ 374 (486)
+|.++|+++++++.. ........++..... ... ...+......++.+.. ....++..++..+...+++++.+
T Consensus 281 gp~~~g~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~ 359 (465)
T 3e9k_A 281 GAGGIAGAFIHEKHA-HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRK 359 (465)
T ss_dssp CTTCCCEEEECGGGT-TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCceEEEEEcHHHH-hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 788889999876532 111111111111100 000 0000001111222222 12355666777766667899999
Q ss_pred HHHHHHHHHHHHHhCC----------CCeEEecCCC----eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCc
Q 038818 375 SHVRMAQLFQELVGGD----------NRFEIVAPRN----FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQ 440 (486)
Q Consensus 375 ~~~~~a~~l~~~L~~~----------~~~~~~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 440 (486)
+..++++++.+.|+++ ++++++.+.+ .++++|.+... ...+.+.|.++|+
T Consensus 360 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------------~~~l~~~L~~~Gi 423 (465)
T 3e9k_A 360 KSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------------NKDVFQELEKRGV 423 (465)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT----------------TCCHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------------HHHHHHHHHHCCE
Confidence 9999999999999885 7899886542 67888877521 1245667777787
Q ss_pred EEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 441 LYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 441 ~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
++ . ..+..++|+++++..++++||+++++.|++++++..
T Consensus 424 ~v-~---~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 424 VC-D---KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp EC-E---EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred EE-e---cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 43 2 334568999986788899999999999999886543
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=240.40 Aligned_cols=323 Identities=13% Similarity=0.092 Sum_probs=223.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--H
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--L 185 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~ 185 (486)
++....+..++++++++++|.+... ..+++|+|||+|+. ++..... +++.|+++..+|++ +
T Consensus 30 ~~~~~~~~~~~~~~la~~~~~~~~~-----~~v~~~~g~t~al~-~~~~~~~-----------~gd~vi~~~~~~~~~~~ 92 (384)
T 3zrp_A 30 SKEFVEALAYSLKGLRYVMGASKNY-----QPLIIPGGGTSAME-SVTSLLK-----------PNDKILVVSNGVFGDRW 92 (384)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTS-----EEEEEESCHHHHHH-HGGGGCC-----------TTCEEEEECSSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCC-----cEEEEcCCcHHHHH-HHHhhcC-----------CCCEEEEecCCcchHHH
Confidence 4555778888999999999997621 16899999999998 7655422 56778888889976 5
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
...++..|+ +++.+|++. ++.+|+++|++++++.. +.+|+++.++|++|.+.|+++|.++|++||+++|+
T Consensus 93 ~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 93 EQIFKRYPV---NVKVLRPSP--GDYVKPGEVEEEVRKSE-----YKLVALTHVETSTGVREPVKDVINKIRKYVELIVV 162 (384)
T ss_dssp HHHHTTSSC---EEEEECCST--TCCCCHHHHHHHHHHSC-----EEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEE
T ss_pred HHHHHHcCC---cEEEecCCC--CCCCCHHHHHHHHHhCC-----CcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEE
Confidence 666777888 999999986 56899999999998621 45889999999999999999999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHH-hc-CCcccccC-ccCCC-CCccCC
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKA-LS-TNPEFLRN-KASDS-KQVVDY 341 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~-~~-~~~~y~~~-~~~~~-~~~~~~ 341 (486)
|++++.+....+ .. . .++|++++++||++++|.|+|+++++++. .... .. ...++... ..... ...+..
T Consensus 163 D~a~~~~~~~~~-~~----~-~~~d~~~~s~~K~~~~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (384)
T 3zrp_A 163 DGVSSVGAEEVK-AE----E-WNVDVYLTASQKALGSAAGLGLLLLSPKA-LSILDSQNSIAGYYLDLRNWLPVMRGAEE 235 (384)
T ss_dssp ECTTTTTTSCCC-TT----T-TTCSEEEEETTSTTCCCSSEEEEEECHHH-HHHHHHCCCSCCSTTCHHHHHHHHHHHHT
T ss_pred ECcccccCcccc-cc----c-cCCCEEEecCcccccCCCceEEEEECHHH-HHHhcCCCCCCcccccHHHHHHHHHhhcc
Confidence 999976543221 11 1 16899999999999988899999887653 2222 11 00111100 00000 000000
Q ss_pred CCcccc-CCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC----CeeEEEEEeecCCCCC
Q 038818 342 KDWQIT-LSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR----NFAVVCFRVLPSASGL 415 (486)
Q Consensus 342 ~~~~~~-~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~----~~~~v~f~~~~~~~~~ 415 (486)
+ .... ++.. ....++..++..+...+++++.++..++++++.+.|+++ ++++..++ ...+++|.+....
T Consensus 236 ~-~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--- 310 (384)
T 3zrp_A 236 G-KAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVAD--- 310 (384)
T ss_dssp T-CCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSSC---
T ss_pred c-CCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCCC---
Confidence 0 0000 0111 122344556666656678899999999999999999998 88876554 2456677765311
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
..++.+.|.++|+.+. +.......++|+++. ..++++|++++++.|+++++++.
T Consensus 311 ------------~~~~~~~l~~~gi~v~-~g~~~~~~~iRi~~~-~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 311 ------------PQKVLAGTVNEGVEFA-PGVHPAFKYFRIGHM-GWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp ------------HHHHHHHHHTTTCCCE-ECCCTTCCEEEEECC-SSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHCCEEEe-cCCCCCcCEEEEecc-ccCCHHHHHHHHHHHHHHHHHcC
Confidence 3466777777887433 222111278999985 45788899999999999987653
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-28 Score=237.44 Aligned_cols=343 Identities=12% Similarity=0.061 Sum_probs=227.4
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHH
Q 038818 79 YFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
+.+++...+..+.+.+...+.. ..++.......++++++++++|.+.+. ..+++|+|||+|+..++.+.+
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~~-----~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFDPGEGA-----LVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHCCCTTC-----EEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCCC-----ceEEEcCCcHHHHHHHHHHhc
Confidence 4455444444455555544432 134556677889999999999986210 268999999999987766542
Q ss_pred HHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEe
Q 038818 159 DQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236 (486)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~ 236 (486)
. +.|+++..+|++. .+.++..|+ +++.+|+++ ++.+|+++|++++++. .+.+|++
T Consensus 74 ------------~-d~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~ 130 (353)
T 2yrr_A 74 ------------R-GPVLVLVNGAFSQRVAEMAALHGL---DPEVLDFPP--GEPVDPEAVARALKRR-----RYRMVAL 130 (353)
T ss_dssp ------------C-CCEEEEECSHHHHHHHHHHHHTTC---CEEEEECCT--TSCCCHHHHHHHHHHS-----CCSEEEE
T ss_pred ------------C-CcEEEEcCCCchHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHHHHHHhC-----CCCEEEE
Confidence 2 3466777888874 566788899 999999975 5689999999999762 1347888
Q ss_pred ecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 237 ~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
+.++|++|.+.|+++|.++|++||+|+|+|++|+.+....+ ... . ++|.+++++|||+++|.|+|+++++++.
T Consensus 131 ~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~-~~~----~-~~d~~~~s~~K~~~~~~g~G~~~~~~~~- 203 (353)
T 2yrr_A 131 VHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFS-MRA----M-GVDYAFTGSQKCLSAPPGLAPIAASLEA- 203 (353)
T ss_dssp ESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-HHH----H-TCSEEECCTTSTTCCCSSCEEEEECHHH-
T ss_pred EccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccccc-ccc----c-CceEEEecCcccccCCCceEEEEECHHH-
Confidence 99999999999999999999999999999999964433221 111 1 5799999999999988899999887653
Q ss_pred HHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 317 LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
.. .+...+.+...... ...... . ....++... ...++..++..+...+++++.++..++++++.+.|+++ ++++
T Consensus 204 ~~-~l~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 278 (353)
T 2yrr_A 204 RK-AFTGKRGWYLDLAR-VAEHWE-R-GGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRP 278 (353)
T ss_dssp HH-HCCCCSCSTTCHHH-HHHHHT-T-CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred HH-HhccCCCccccHHH-Hhhhhh-c-CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 22 22211111100000 000000 0 000111111 11334455665555668889999999999999999988 8988
Q ss_pred ecCC--CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHH-HHH
Q 038818 396 VAPR--NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI-AAW 472 (486)
Q Consensus 396 ~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did-~~i 472 (486)
..++ ...+++|++.... + ..++.+.|.++|+.+..+.......++|+++.. ..+++|++ +++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~-~~~~~~~~~~~~ 343 (353)
T 2yrr_A 279 YPKASPLPTVLVVRPPEGV------------D--ADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMG-EGARREAYQAFL 343 (353)
T ss_dssp SCSSSBCTTEEEEECCTTC------------C--HHHHHHHHHHTTEECEECCGGGTTTCEEEECSG-GGSCHHHHHHHH
T ss_pred ccCccCCCeEEEEECCCCC------------C--HHHHHHHHHHCCEEEeCCccccCCCeEEEecCc-cCCHHHHHHHHH
Confidence 7543 3345677764210 1 345677777778754333322335689999854 44556888 999
Q ss_pred HHHHHHHHH
Q 038818 473 KVVQEKLDG 481 (486)
Q Consensus 473 ~~l~~~~~~ 481 (486)
+.|++++++
T Consensus 344 ~~l~~~l~~ 352 (353)
T 2yrr_A 344 KALDRALAL 352 (353)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988753
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-27 Score=235.83 Aligned_cols=343 Identities=13% Similarity=0.122 Sum_probs=232.5
Q ss_pred CcceecCCCCCHHHHHHHHHHhhcC--CC-c---c-ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGFN--VV-G---F-NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC 147 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~n--~~-~---~-~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt 147 (486)
-|+++..+++.++. +.+.+...+. .. . . .+..+........++++++++++|.+.+ .+++|+|||
T Consensus 24 iyld~~~~~~~~~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-------~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSATTPVDPR-VAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-------EIVFTSGAT 95 (423)
T ss_dssp EECBTTTCCCCCHH-HHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESSHH
T ss_pred EeecCCCcCCCCHH-HHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-------eEEEeCChH
Confidence 46666555544444 4444444443 11 1 1 2233344567778899999999999765 689999999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc---CCCCCCeEEEecCCCCCcccCHHHHHHHHHHH
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA---GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLD 224 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~---G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~ 224 (486)
+|+..++.++++... .+++.|+++..+|+++..++..+ |+ +++.+|+++ ++.+|+++|+++|++.
T Consensus 96 ~a~~~a~~~l~~~~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGF---EVTYLAPQR--NGIIDLKELEAAMRDD 163 (423)
T ss_dssp HHHHHHHHHHHHHHT-------TTCCEEEEETTSCHHHHHHHHHHHHTTC---EEEEECCCT--TSCCCHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHhhc-------cCCCEEEECCccchHHHHHHHHHHHcCC---EEEEeccCC--CCccCHHHHHHhcCCC
Confidence 999999887765321 14678889999999988887555 88 999999986 5799999999998753
Q ss_pred HHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC
Q 038818 225 IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL 304 (486)
Q Consensus 225 ~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~ 304 (486)
+.+|+++.++|++|.+.|+++|+++|++||+++++|++++.+....+. . . .+.|+++.++||++ +|.
T Consensus 164 ------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~----~-~~~di~~~s~sK~~-g~~ 230 (423)
T 3lvm_A 164 ------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDL-S----Q-LKVDLMSFSGHKIY-GPK 230 (423)
T ss_dssp ------EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCT-T----T-SCCSEEEEESTTTT-SCS
T ss_pred ------cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcCh-h----h-cCCCEEEechHHhc-CCC
Confidence 458889999999999999999999999999999999999875442211 1 1 15899999999964 577
Q ss_pred cceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC-CCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 038818 305 DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL-SRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQL 382 (486)
Q Consensus 305 ~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~ 382 (486)
|+|+++++++... ....+...... . ..... +... ...++..++..+ .+.++++.++..+++++
T Consensus 231 g~G~~~~~~~~~~-----~~~~~~~~~~~------~---~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~ 295 (423)
T 3lvm_A 231 GIGALYVRRKPRV-----RIEAQMHGGGH------E---RGMRSGTLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNR 295 (423)
T ss_dssp SCEEEEECBTTBC-----CCCCSSCSSCT------T---TTTCCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeccccC-----CCCccccCCcc------c---ccccCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 7999998765221 11111111000 0 00001 1011 112233344433 23478889999999999
Q ss_pred HHHHHhCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-----------
Q 038818 383 FQELVGGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV----------- 448 (486)
Q Consensus 383 l~~~L~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----------- 448 (486)
+.+.|+++|++++..++. .++++|.+.... ...+.+.+.+ +.+.+...
T Consensus 296 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~ 357 (423)
T 3lvm_A 296 LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE---------------GESLIMALKD---LAVSSGSACTSASLEPSYV 357 (423)
T ss_dssp HHHHHTTSTTEEEESCSTTBCTTEEEEEETTSC---------------HHHHHHHTTT---EECBCCCC-----CCCCHH
T ss_pred HHHHHhcCCCEEEeCCccccCCCeEEEEeCCCC---------------HHHHHHHHhh---heeccCccccCCCccccHH
Confidence 999999999999886543 357777774321 2244544443 23332211
Q ss_pred ------C---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 449 ------A---GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 449 ------~---~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
. ...++|+++. ..++++||+++++.|+++++++.+
T Consensus 358 ~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 358 LRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 0 1368999985 677888999999999999887654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=235.62 Aligned_cols=340 Identities=14% Similarity=0.034 Sum_probs=227.9
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHH
Q 038818 80 FPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARD 159 (486)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~ 159 (486)
.+++...+..+.+.+...+.. ..++.......++++++++++|.+++ .+++|+|||+|+..++.+...
T Consensus 6 ~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-------~i~~~~g~t~a~~~~~~~~~~ 73 (352)
T 1iug_A 6 TPGPVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEGE-------VLILTGSGTLAMEALVKNLFA 73 (352)
T ss_dssp SSSSCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSSE-------EEEEESCHHHHHHHHHHHHCC
T ss_pred cCCCCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCCc-------eEEEcCchHHHHHHHHHhccC
Confidence 344444444456666655532 13455566777899999999998754 689999999999888877632
Q ss_pred HHHHHccccCCCCeEEEecCCCchHHH--HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEee
Q 038818 160 QILNEIGRENISRLVVYGSDQTHSALQ--KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCAT 237 (486)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~s~~~H~s~~--~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~ 237 (486)
+++.|+++..+|++.. +.++..|+ +++.+|+++ ++.+|+++|++ + .+.+|+++
T Consensus 74 -----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~---~------~~~~v~~~ 128 (352)
T 1iug_A 74 -----------PGERVLVPVYGKFSERFYEIALEAGL---VVERLDYPY--GDTPRPEDVAK---E------GYAGLLLV 128 (352)
T ss_dssp -----------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCTTTSCC---S------SCSEEEEE
T ss_pred -----------CCCeEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHhc---c------CCcEEEEE
Confidence 5667888888999964 45566788 999999975 46899998876 1 24478889
Q ss_pred cCCccccccCCchHHHHHHHHh--CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 238 VGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 238 ~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
+++|++|.+.|+++|.++|++| |+++|+|++|+.+....+ ... .++|+++.++|||+++|.|+|+++++++.
T Consensus 129 ~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-~~~-----~~~d~~~~s~~K~~~~~~g~G~~~~~~~~ 202 (352)
T 1iug_A 129 HSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA-LEA-----MGVDAAASGSQKGLMCPPGLGFVALSPRA 202 (352)
T ss_dssp SEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC-SGG-----GTCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred EecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCccee-ccc-----cCeeEEEecCcccccCCCceeEEEECHHH
Confidence 9999999999999999999999 999999999975433222 111 15899999999999999899999986542
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE 394 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 394 (486)
. . .+.. ..+...-.. ............+... ...++..++..+... ++++.++..++++++.+.|+++ +++
T Consensus 203 ~-~-~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~ 274 (352)
T 1iug_A 203 L-E-RLKP-RGYYLDLAR---ELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLR 274 (352)
T ss_dssp H-H-TCCC-CSSTTCHHH---HHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred H-H-HhhC-CCceeeHHH---HHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 2 2 1111 001000000 0000000000011111 112334445544333 7888999999999999999988 898
Q ss_pred EecCC-CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 038818 395 IVAPR-NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 395 ~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
+..++ ..++++|.+.... + ..++.+.|.++|+.+..+....+..++|+++. ..++++|++++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~ 339 (352)
T 1iug_A 275 PVPKRFSPAVAAFYLPEGV------------P--YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLM-GAYDRYEALGVAG 339 (352)
T ss_dssp ESCSSBCTTCEEEECCTTC------------C--HHHHHHHHHTTTEECEECCGGGTTTEEEECCC-SSCCHHHHHHHHH
T ss_pred ccccccCCeEEEEEcCCCC------------C--HHHHHHHHHHCCEEEEeCCCccCCCEEEEEcc-ccCCHHHHHHHHH
Confidence 87543 4567777764210 1 24577777788875433321123568999995 4667889999999
Q ss_pred HHHHHHHHHhhc
Q 038818 474 VVQEKLDGILAT 485 (486)
Q Consensus 474 ~l~~~~~~l~~~ 485 (486)
.|+++++++...
T Consensus 340 ~l~~~~~~~~~~ 351 (352)
T 1iug_A 340 MFREVLEEILPA 351 (352)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhcCC
Confidence 999999887543
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=237.13 Aligned_cols=344 Identities=11% Similarity=0.040 Sum_probs=229.3
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc-CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF-NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCT 153 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~a 153 (486)
+++.+.|++...+..+.+.+...+ ++....+..++...++.+++++++++++|.++.. .+++|+|||+|+..+
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~------~v~~~~g~t~al~~~ 77 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNY------EVLFLASATEIWERI 77 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTE------EEEEESCHHHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCc------EEEEeCCchHHHHHH
Confidence 356677776555544444443333 3221122346677788889999999999986432 689999999999877
Q ss_pred HHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 154 LAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 154 l~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
+.+... + .+++....|++ +...++..|+ +++.++.+. ++.+|+++|+ +++ .+
T Consensus 78 ~~~l~~-----------~--~~i~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~--~~~------~~ 131 (362)
T 3ffr_A 78 IQNCVE-----------K--KSFHCVNGSFSKRFYEFAGELGR---EAYKEEAAF--GKGFYPADIT--VPA------DA 131 (362)
T ss_dssp HHHHCS-----------S--EEEEEECSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCGGGCC--CCT------TC
T ss_pred HHhccC-----------C--cEEEEcCcHHHHHHHHHHHHhCC---CeEEEecCC--CCCCCHHHHh--ccC------Cc
Confidence 776532 4 34444456666 4456778898 999999875 5689999998 322 24
Q ss_pred EEEEeecCCccccccCCchHHHHHHHHh-CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 232 LFLCATVGTTAITTVDPLGPLCDIAKRY-SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idpl~~I~~i~~~~-g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
.+|++++++|++|.+.|+++|+++|++| |+++|+|++|+.+....+ +..+|+++.++||++++|.|+|+++
T Consensus 132 ~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~--------~~~~d~~~~s~~K~~~~~~G~g~~~ 203 (362)
T 3ffr_A 132 EIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFD--------WTKIDSVFFSVQKCFGLPAGLGVWI 203 (362)
T ss_dssp CEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCC--------TTSCSEEEEETTSTTCCCSCCEEEE
T ss_pred cEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccC--------hhHCcEEEEecccccCCCCceEEEE
Confidence 5888999999999999999999999999 999999999975443221 1238999999999999888999988
Q ss_pred eeCchHHHHHhcCC-----cccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 038818 311 VKNPNALIKALSTN-----PEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 311 ~~~~~~~~~~~~~~-----~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~ 384 (486)
++++. ..+..... .++...... ............+.. ....++..+++.+..++++++.++..++++++.
T Consensus 204 ~~~~~-~~~~~~~~~gg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~ 279 (362)
T 3ffr_A 204 LNDRV-IEKSKALLAKRKSIGTYHTIPS---MLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALIN 279 (362)
T ss_dssp EEHHH-HHHHHHHHHTTCCCCSTTSHHH---HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ECHHH-HHHhhhccccCCCCcccccHHH---HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 87642 22111110 011100000 000000000011111 122344555655555678899999999999999
Q ss_pred HHHhCCCCeEEecCC----CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecC
Q 038818 385 ELVGGDNRFEIVAPR----NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGA 460 (486)
Q Consensus 385 ~~L~~~~~~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~ 460 (486)
+.|+++|++++..++ ...+++|.+.. . ..++.+.|.++|+.+..+....+..++|++++
T Consensus 280 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~- 342 (362)
T 3ffr_A 280 TYIESSKVFSFGVEDAKLRSMTTIVANTTM-L---------------PGEINKILEPFDMAVGAGYGSKKETQIRIANF- 342 (362)
T ss_dssp HHHHHCSSEEESSSCGGGBCSSEEEEEESS-C---------------HHHHHHHHGGGTEEEEECSGGGTTTEEEEECC-
T ss_pred HHHHHccCceeccCChhhcCCceEEEecCC-C---------------HHHHHHHHHHCCeEEecCccccCCCEEEEECC-
Confidence 999999999987522 24567777643 1 34677788888875443332234568999996
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~ 479 (486)
..++++|+++++++|+++.
T Consensus 343 ~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 343 PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 4678889999999998763
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=236.16 Aligned_cols=321 Identities=12% Similarity=0.077 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HH
Q 038818 112 TELENIVMDWLGEMLKL-PKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQ 186 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~-~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~ 186 (486)
.....++++++++++|. +.+ .+++|+|||+|+..++.+++.... .+++.|+++..+|++ +.
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~-------~v~~~~g~t~a~~~~~~~~~~~~~-------~~gd~Vl~~~~~~~~~~~~~~ 136 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPR-------EIVYTRNATEAINLVAYSWGMNNL-------KAGDEIITTVMEHHSNLVPWQ 136 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGG-------GEEEESSHHHHHHHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-------eEEEcCChHHHHHHHHHHhhhccc-------CCCCEEEECcchhHHHHHHHH
Confidence 45566788999999998 433 689999999999988887742110 156678889999988 56
Q ss_pred HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
..++..|+ +++.+|+++ ++.+|+++|+++|++. +.+|+++.++|++|.+.|+++|.++|++||+++|+|
T Consensus 137 ~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 205 (420)
T 1t3i_A 137 MVAAKTGA---VLKFVQLDE--QESFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD 205 (420)
T ss_dssp HHHHHHCC---EEEEECBCT--TSSBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCc---EEEEeccCC--CCCcCHHHHHHhhCCC------ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEE
Confidence 77888899 999999974 5789999999998642 457889999999999999999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCcc-CCCCCccCCCCc
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKA-SDSKQVVDYKDW 344 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~-~~~~~~~~~~~~ 344 (486)
++|+.+.... ..... +.|+++.++||.+ +|.|+|+++++++ ... .+.. ......... ......+.....
T Consensus 206 ~a~~~~~~~~-~~~~~-----~~di~~~s~sK~~-~~~g~G~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 1t3i_A 206 ACQSAPHYPL-DVQLI-----DCDWLVASGHKMC-APTGIGFLYGKEE-ILE-AMPPFFGGGEMIAEVFFDHFTTGELPH 276 (420)
T ss_dssp CTTTTTTSCC-CHHHH-----TCSEEEEEGGGTT-SCTTCEEEEECHH-HHH-HSCCCSCSTTSEEEECSSCEEECCTTG
T ss_pred hhhccCCccC-chhhc-----CCCEEEEehhhhc-CCCceEEEEEchH-HHh-hcCceecCCCccccccccccCCCCchh
Confidence 9998654322 12221 5899999999954 5677898888643 332 2221 110000000 000000000001
Q ss_pred cccCCCC-CC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----CeeEEEEEeecCCCCCCC
Q 038818 345 QITLSRR-FR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----NFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 345 ~~~~sr~-~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~ 417 (486)
.+..+.. .. .+++..+++.+...+++++.++..++++++.+.|++++++++..++ ..++++|.+.+.
T Consensus 277 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 350 (420)
T 1t3i_A 277 KFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL------ 350 (420)
T ss_dssp GGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB------
T ss_pred hccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCC------
Confidence 1111111 11 1223335555555578888999999999999999999899988654 367888876421
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeee--------ECC-EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGM--------VAG-IYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~~-~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+ ..++.+.+.+.|+. +.+.. ..+ ..++|+++. ..++++|+++++++|+++++.+.
T Consensus 351 -------~--~~~~~~~l~~~gi~-v~~~~~~~~~~~~~~g~~~~iRis~~-~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 351 -------H--ASDVATMVDQDGIA-IRSGHHCTQPLHRLFDASGSARASLY-FYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp -------C--HHHHHHHHHTTTEE-CBCSCTTCHHHHHHTTCCCCEEEECC-TTCCHHHHHHHHHHHHHHHHHTC
T ss_pred -------C--HHHHHHHHHHCCeE-EeeccccchHHHHhcCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 23566677777874 33321 113 578999985 56788899999999999988764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=235.46 Aligned_cols=357 Identities=14% Similarity=0.053 Sum_probs=236.1
Q ss_pred CCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 72 QSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
..++.+.+.+++...+..+.+.+...+.. .| ++.......++++++++++|.+.+. .+++|+|||+++.
T Consensus 15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~~------~v~~~~g~t~al~ 83 (396)
T 2ch1_A 15 IIPEKIMMGPGPSNCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENRA------TMCVSGSAHAGME 83 (396)
T ss_dssp CCCCCBCCSSSSCCCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHH
T ss_pred CCCcceeecCCCCCCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCCc------EEEECCcHHHHHH
Confidence 44566667666555555555555544322 23 4444566678899999999987531 4789999999998
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH--HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ--KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
.++.+... +++.|+++..+|++.. +.++..|+ +++.+|+++ ++.+|+++|++++++..
T Consensus 84 ~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~---- 143 (396)
T 2ch1_A 84 AMLSNLLE-----------EGDRVLIAVNGIWAERAVEMSERYGA---DVRTIEGPP--DRPFSLETLARAIELHQ---- 143 (396)
T ss_dssp HHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TSCCCHHHHHHHHHHHC----
T ss_pred HHHHHhcC-----------CCCeEEEEcCCcccHHHHHHHHHcCC---ceEEecCCC--CCCCCHHHHHHHHHhCC----
Confidence 88777632 5667888888998864 57788899 999999975 56899999999998631
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEE
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCL 309 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~ 309 (486)
+.+|+++.++|++|.+.|+++|.++|+++|+++++|++|+.+....+ +... ++|+++.++||++++|.++|++
T Consensus 144 -~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~ 216 (396)
T 2ch1_A 144 -PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFY-----MDKW-EIDAVYTGAQKVLGAPPGITPI 216 (396)
T ss_dssp -CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCCEEECCCC-CCCCCSSCEEE
T ss_pred -CCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccc-----hhhc-CcCEEEEcCCccccCCCCeEEE
Confidence 34788899999999999999999999999999999999974432211 1111 5799999999999999999988
Q ss_pred EeeCchHHHHHhcC---CcccccCcc-CCC-CCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 038818 310 WVKNPNALIKALST---NPEFLRNKA-SDS-KQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 310 ~~~~~~~~~~~~~~---~~~y~~~~~-~~~-~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l 383 (486)
+++++ .+...... ..+++.... ... ........+ ..++... ...++..++..+..++++++.++..++++++
T Consensus 217 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 294 (396)
T 2ch1_A 217 SISPK-ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKR-YHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQIL 294 (396)
T ss_dssp EECHH-HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC-CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EECHH-HHHhhhhccCcccceEechHHHHHhhhhhcccCC-CCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88763 33222111 111111100 000 000000000 0111111 1133444555555567888999999999999
Q ss_pred HHHHhCCCCeEEecCCC---e-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEe
Q 038818 384 QELVGGDNRFEIVAPRN---F-AVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAV 458 (486)
Q Consensus 384 ~~~L~~~~~~~~~~~~~---~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~ 458 (486)
.+.|+++ ++++..+.. . .+++|++.... + ..++.+.|.++ |+.+..+.......++|+++
T Consensus 295 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~ 359 (396)
T 2ch1_A 295 YEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV------------D--WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGI 359 (396)
T ss_dssp HHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC------------C--HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEEC
T ss_pred HHHHHHC-CCeeccCCccccCCceEEEEcCCCC------------C--HHHHHHHHHHhCCEEEecCccccCCCEEEEEC
Confidence 9999987 787764432 1 26677764210 1 23566666654 87533222222356899998
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 459 GATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 459 ~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.+.++++|++++++.|+++++++.
T Consensus 360 ~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 360 MGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 6567789999999999999987764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-26 Score=225.51 Aligned_cols=309 Identities=13% Similarity=0.129 Sum_probs=214.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA 188 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 188 (486)
........++++++++++|.+.+ .+++|+|||+|+..++.+++.... .+++.|+++..+|+++...
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~~~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~ 105 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVLGVSPS-------EIFFTSCATESINWILKTVAETFE-------KRKRTIITTPIEHKAVLET 105 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGG-------GEEEESCHHHHHHHHHHHHHHHTT-------TTCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-------eEEEECCHHHHHHHHHHhhhhhcc-------CCCCEEEECCCCchHHHHH
Confidence 34456777889999999998754 689999999999988888763100 0567788999999988776
Q ss_pred H---HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC--ceE
Q 038818 189 A---QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS--IWV 263 (486)
Q Consensus 189 ~---~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g--~~l 263 (486)
+ +..|+ +++.+|+++ ++.+|+++|++++++. +.+|+++.++|++|.+.|+++|.++|++|| +++
T Consensus 106 ~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~l 174 (384)
T 1eg5_A 106 MKYLSMKGF---KVKYVPVDS--RGVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLV 174 (384)
T ss_dssp HHHHHHTTC---EEEECCBCT--TSCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEE
T ss_pred HHHHHhcCC---EEEEEccCC--CCccCHHHHHHHhCCC------CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEE
Confidence 6 66788 899999875 5789999999988642 457888999999999999999999999999 999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
|+|++|+.+.... . +... +.|++++++||+++ |.|+|+++++++. ...+ ++..... ..
T Consensus 175 i~Dea~~~~~~~~-~----~~~~-~~di~~~s~sK~~g-~~G~G~~~~~~~~------~~~~-~~~~~~~-------~~- 232 (384)
T 1eg5_A 175 HVDAVQTIGKIPF-S----LEKL-EVDYASFSAHKFHG-PKGVGITYIRKGV------PIRP-LIHGGGQ-------ER- 232 (384)
T ss_dssp EEECTTTTTTSCC-C----CTTT-CCSEEEEEGGGGTS-CTTCEEEEECTTS------CCCC-SBCSSCT-------TT-
T ss_pred EEEhhhhcCCccc-C----chhc-CCCEEEecHHHhcC-CCceEEEEEcCCC------cccc-ccccCcc-------cc-
Confidence 9999987332211 1 1222 58999999999855 5568999887652 0111 1111000 00
Q ss_pred ccccCCCCCCch---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC---CeeEEEEEeecCCCCCCC
Q 038818 344 WQITLSRRFRAL---KLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR---NFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 344 ~~~~~sr~~~~l---~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~ 417 (486)
....+ ....+ +++.+++.. .++++++.++..++++++.+.|++ +++++..++ ....+.|.+...
T Consensus 233 -~~~~~-~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~------ 302 (384)
T 1eg5_A 233 -GLRSG-TQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNI------ 302 (384)
T ss_dssp -TTBCS-CCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTC------
T ss_pred -cccCC-CCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCC------
Confidence 00111 11222 333444432 356788899999999999999998 689887553 234667766421
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-------------------CEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVA-------------------GIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------------~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+ ..++.+.|.+.|+.+..+..+. +..++|+++. +.++++|++++++.|+++
T Consensus 303 -------~--~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 303 -------R--GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp -------C--HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred -------C--HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1 2356667777787433221111 1468999984 567888999999999999
Q ss_pred HHHHhh
Q 038818 479 LDGILA 484 (486)
Q Consensus 479 ~~~l~~ 484 (486)
++++.+
T Consensus 373 ~~~~~~ 378 (384)
T 1eg5_A 373 LSFLDL 378 (384)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 887654
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=231.11 Aligned_cols=322 Identities=16% Similarity=0.096 Sum_probs=218.2
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH----
Q 038818 111 ATELENIVMDWLGEMLKL-PKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL---- 185 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~-~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~---- 185 (486)
......++++++++++|. +.+ .+++|+|||+|+..++.+++.... .+++.|+++..+|++.
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~-------~v~~~~g~t~a~~~~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~ 130 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAE-------ELVFVRGTTEGINLVANSWGNSNV-------RAGDNIIISQMEHHANIVPW 130 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGG-------GEEEESSHHHHHHHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-------eEEEeCChhHHHHHHHHHhhhhcC-------CCCCEEEEecccchHHHHHH
Confidence 355667788999999998 333 689999999999988888752110 1566788888898764
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
...++..|+ +++.+|+++ ++.+|+++|+++|++. +.+|+++.++|++|.+.|+++|+++|++||+++++
T Consensus 131 ~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 199 (406)
T 1kmj_A 131 QMLCARVGA---ELRVIPLNP--DGTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLV 199 (406)
T ss_dssp HHHHHHHTC---EEEEECBCT--TSCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCC---EEEEEecCC--CCCcCHHHHHHHhccC------CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEE
Confidence 345677899 999999875 5689999999998642 45788999999999999999999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccC-CC-CCccCCC
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKAS-DS-KQVVDYK 342 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~-~~-~~~~~~~ 342 (486)
|++|+.+....+ ... . +.|+++.++||++ +|.|+|++++++ +... .+.. ..+....... .. .......
T Consensus 200 D~~~~~g~~~~~-~~~----~-~~d~~~~s~~K~~-g~~G~G~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (406)
T 1kmj_A 200 DGAQAVMHHPVD-VQA----L-DCDFYVFSGHKLY-GPTGIGILYVKE-ALLQ-EMPPWEGGGSMIATVSLSEGTTWTKA 270 (406)
T ss_dssp ECTTTTTTSCCC-HHH----H-TCSEEEEEGGGTT-SCTTCEEEEECH-HHHH-HCCCSSCSTTSEEEEETTTEEEECCT
T ss_pred EchhhcCCCCCc-ccc----c-CCCEEEEEchhcc-CCCCcEEEEEeH-HHHh-hcCCcccCCCceeecccccccccCCC
Confidence 999986543221 111 1 5899999999988 566789998864 3332 2211 1000000000 00 0000000
Q ss_pred CccccCCCC-CC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCCCCCCCC
Q 038818 343 DWQITLSRR-FR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSASGLGDGK 419 (486)
Q Consensus 343 ~~~~~~sr~-~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~ 419 (486)
.+.++.+.. .. .+++..++..+...+++++.++..++++++.+.|+++|++++..++ ..++++|.+.+.
T Consensus 271 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------- 342 (406)
T 1kmj_A 271 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-------- 342 (406)
T ss_dssp TGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC--------
T ss_pred chhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCC--------
Confidence 011111111 11 1222244455544577888899999999999999999899987553 677888876321
Q ss_pred CccchHHHHHHHHHHHHhcCcEEEeeee--------ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 420 ANEGANELNRKLLESINASGQLYVSHGM--------VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+ ..++.+.+.++|+.+..+.. +....++|+++. ..++++|++++++.|+++++.+
T Consensus 343 -----~--~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 343 -----H--AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA-MYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp -----C--HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----C--HHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEee-cCCCHHHHHHHHHHHHHHHHhh
Confidence 1 23466677777875433221 122478999995 5678889999999999988764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=229.88 Aligned_cols=342 Identities=11% Similarity=0.016 Sum_probs=223.5
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHH
Q 038818 79 YFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
+.|++...+..+.+.+...+.. ..++....+..++++++++++|.+.+. ...++|+|||+|+..++.+..
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~-----~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVPY-----FRTTEFSSTMLENEKFMLEYAKAPEGS-----KAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCCC-----CSSHHHHHHHHHHHHHHHHHHTCCTTC-----EEEEESSCHHHHHHHHHHHHC
T ss_pred ecCCCCCCcHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCChhHHHHHHHHhcc
Confidence 3455555555555555443321 124556677888999999999997531 134558999999988877664
Q ss_pred HHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEe
Q 038818 159 DQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236 (486)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~ 236 (486)
. +++.|+++...+++. ...+...|. +++.+|++. ++.+|+++|+++++++ +.+|++
T Consensus 93 ~-----------~gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~~~~~------~~~v~~ 150 (376)
T 3f0h_A 93 T-----------KKDKVLVIDGGSFGHRFVQLCEIHEI---PYVALKLEH--GKKLTKEKLYEYDNQN------FTGLLV 150 (376)
T ss_dssp C-----------TTCCEEEEESSHHHHHHHHHHHHTTC---CEEEEECCT--TCCCCHHHHHTTTTSC------CCEEEE
T ss_pred C-----------CCCeEEEEeCChhhHHHHHHHHHcCC---ceEEEeCCC--CCCCCHHHHHHhhccC------ceEEEE
Confidence 3 455566665555553 345677788 999999875 5699999999876432 457888
Q ss_pred ecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 237 TVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 237 ~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
+.++|++|.+.|+++|+++|++||+++|+|++++.+....+ ... .++|+++.++||++++|.|+|+++++++.
T Consensus 151 ~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~-~~~-----~~~d~~~~s~~K~l~~~~G~g~~~~~~~~- 223 (376)
T 3f0h_A 151 NVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFN-MNE-----CGADVMITGSQKVLACPPGISVIVLAPRG- 223 (376)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-HHH-----HTCSEEEEETTTTTCCCSSCEEEEECHHH-
T ss_pred ecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccc-ccc-----cCccEEEecCcccccCCCceEEEEECHHH-
Confidence 88999999999999999999999999999999976554321 111 15899999999999988899998876543
Q ss_pred HHHHhc-CCcccccCccCCCCCccCCCCccccCCCCCCc---hHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCC
Q 038818 317 LIKALS-TNPEFLRNKASDSKQVVDYKDWQITLSRRFRA---LKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDN 391 (486)
Q Consensus 317 ~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~---l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~ 391 (486)
...... ...++...... ............ .... .++..++..+... +++++.++..++++++.+.|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 297 (376)
T 3f0h_A 224 VERVEKSKVRTMYFDLKD---ALKNQERGQTPF--TPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL- 297 (376)
T ss_dssp HHHHHTCCCCCSTTCHHH---HHHHHTTTCCSS--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHhhcCCCCceeecHHH---HHhhcccCCCCC--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 222221 11111110000 000000000000 1111 3345555555555 68889999999999999999987
Q ss_pred CeEEecCCCee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 038818 392 RFEIVAPRNFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 392 ~~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~~~tt~~did 469 (486)
++++..+...+ ++.+...+. ...++.+.|.++ |+.+..+....+..++|+++. ..++++|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~-~~~t~e~i~ 361 (376)
T 3f0h_A 298 PFELVSESPANGVTSVHPTTA---------------NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHI-GALTHEDNT 361 (376)
T ss_dssp SEEECCSSBBTTEEEEEESSS---------------CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECC-SSCCHHHHH
T ss_pred CCccCccccCceEEEEeCCCC---------------CHHHHHHHHHHhCCEEEecCccccCCCEEEEecC-CCCCHHHHH
Confidence 68876543333 344432211 134567777777 764433322224568999985 467888999
Q ss_pred HHHHHHHHHHHH
Q 038818 470 AAWKVVQEKLDG 481 (486)
Q Consensus 470 ~~i~~l~~~~~~ 481 (486)
++++.|++++++
T Consensus 362 ~~~~~l~~~l~~ 373 (376)
T 3f0h_A 362 TLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=235.02 Aligned_cols=353 Identities=12% Similarity=0.070 Sum_probs=210.1
Q ss_pred CCCCcceecCCCCCHHHHHHHH---HHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 72 QSPYYFAYFPSSGSIAGFLGEM---LSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~---l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
.+.-|+++..+++.++.++..+ +...+......+..+.....+..++++++++++|.+++ .+++|+|||+
T Consensus 19 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-------~v~~~~g~t~ 91 (400)
T 3vax_A 19 SHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD-------ELIFTSGATE 91 (400)
T ss_dssp ---CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG-------GEEEESCHHH
T ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC-------cEEEeCCHHH
Confidence 3455777765555455443322 22222222223444455567778899999999999765 6899999999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCe-EEEecCCCchHHHHHHHHc---CCCCCCeEEEecCCCCCcccCHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRL-VVYGSDQTHSALQKAAQIA---GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLD 224 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~H~s~~~a~~~~---G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~ 224 (486)
|+..++.+......+ +++ .|+++..+|+++...+..+ |+ +++.+|+++ ++.+|+++|+++|++.
T Consensus 92 al~~~~~~l~~~~~~-------~gd~~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~ 159 (400)
T 3vax_A 92 SNNIALLGLAPYGER-------TGRRHIITSAIEHKAVLEPLEHLAGRGF---EVDFLTPGP--SGRISVEGVMERLRPD 159 (400)
T ss_dssp HHHHHHHTTHHHHHH-------HTCCEEEEETTSCHHHHHHHHHHHTTTC---EEEEECCCT--TCCCCHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhhcc-------CCCCEEEECccccHhHHHHHHHHHhcCC---eEEEEccCC--CCCcCHHHHHHhcCCC
Confidence 998888877522111 455 7888889999987776654 77 899999885 5799999999998653
Q ss_pred HHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC
Q 038818 225 IQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL 304 (486)
Q Consensus 225 ~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~ 304 (486)
+.+|+++.++|++|.+.|+++|.++|++||+++++|++|+.+....+ +... +|.++.++||+ ++|.
T Consensus 160 ------~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-----~~~~--~d~~~~s~~K~-~g~~ 225 (400)
T 3vax_A 160 ------TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGD-----LTTP--IDMISISGHKI-GAPK 225 (400)
T ss_dssp ------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGG-----GGSC--CSEEEEETGGG-TSCS
T ss_pred ------ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcC-----hhhc--CcEEEEeHHHh-CCCC
Confidence 45899999999999999999999999999999999999975443211 2222 89999999995 5577
Q ss_pred cceEEE-eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchH---HHHHHHHhchHHHHHHHHHHHHHH
Q 038818 305 DCCCLW-VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK---LWLVLRSFGVANLRNFLRSHVRMA 380 (486)
Q Consensus 305 ~~g~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~a 380 (486)
|+|+++ ++++.......... +++..... ......+ ...... +..++..+ .++++++.++..+++
T Consensus 226 g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~-~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~ 293 (400)
T 3vax_A 226 GVGALVTRRREEMDDERVPLE-PIMFGGGQ---------ERKLRPG-TLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLR 293 (400)
T ss_dssp SCEEEEECBCSSSTTCBCCCC-CSSCSSCT---------GGGTSCS-CCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHH
T ss_pred ceEEEEEecchhccccccccC-ceecCCCc---------eeeeecC-CCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 899999 88743210000011 11111000 0000011 112222 22333322 456788999999999
Q ss_pred HHHHHHHhCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHH-HHHHhcCcEEEeeee---------
Q 038818 381 QLFQELVGGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLL-ESINASGQLYVSHGM--------- 447 (486)
Q Consensus 381 ~~l~~~L~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~--------- 447 (486)
+++.+.|+ .+++++..++. .+++.|.+.... ..++.+.+. .-+...|..+.....
T Consensus 294 ~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~gi~v~~g~~~~~~~~~~~~~~~~~ 361 (400)
T 3vax_A 294 SRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVD-----------AEAFLVTLKDLVAVATGSASTSASFTPSHVLRAM 361 (400)
T ss_dssp HHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCC-----------HHHHHHHHHHHHHHTTTTEEEEEEECCHHHHHTT
T ss_pred HHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCC-----------HHHHHHHHhcCcEEEecccccCCCCCccHHHHHc
Confidence 99999999 88999876543 357777665321 123333332 112233433322110
Q ss_pred -EC---CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 448 -VA---GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 448 -~~---~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.. ...++|+++++..+++++++++++.|++++++
T Consensus 362 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 362 GLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 00 03789999933567788999999999987653
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=228.68 Aligned_cols=334 Identities=10% Similarity=0.069 Sum_probs=226.9
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|... ..++++++.+++++.+|.+.+. ...++|+|||+|+..++.+...
T Consensus 44 ~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~-----~~i~~~~g~~~a~~~~~~~l~~--------- 107 (391)
T 3dzz_A 44 EIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKE-----DWCVFASGVVPAISAMVRQFTS--------- 107 (391)
T ss_dssp HHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCG-----GGEEEESCHHHHHHHHHHHHSC---------
T ss_pred HHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCH-----HHEEECCCHHHHHHHHHHHhCC---------
Confidence 34455555555433344332 5789999999999999954321 2789999999999888776632
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC-CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT-KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV- 246 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d-~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i- 246 (486)
+++.|+++..+|.++..+++..|. +++.+|++ +++++.+|+++|++++++. .+.+|+++.++|++|.+
T Consensus 108 --~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i~~p~nptG~~~ 177 (391)
T 3dzz_A 108 --PGDQILVQEPVYNMFYSVIEGNGR---RVISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGYAW 177 (391)
T ss_dssp --TTCEEEECSSCCHHHHHHHHHTTC---EEEECCCEEETTEEECCHHHHHHHHTST-----TEEEEEEESSBTTTTBCC
T ss_pred --CCCeEEECCCCcHHHHHHHHHcCC---EEEEeeeeecCCceeecHHHHHHHHhcc-----CceEEEEECCCCCCCccc
Confidence 567888999999999999999999 99999986 2345679999999999631 24578889999999999
Q ss_pred --CCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCC-CCCC--ceeeccccccC-CCCcceEEEeeCchHHHHH
Q 038818 247 --DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI-EGAD--SFSLNAHKWFF-TTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 --dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~-~~aD--si~~~~hK~l~-~p~~~g~~~~~~~~~~~~~ 320 (486)
+++++|+++|++||+++|+|++|+++.............. ...| .++.++||+++ .+..+|++++++++.....
T Consensus 178 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~ 257 (391)
T 3dzz_A 178 SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARA 257 (391)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHH
Confidence 8899999999999999999999976543221111111111 1245 78899999997 5567898888766553322
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAPR 399 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~ 399 (486)
......+.. .........++..++.. +.+.++++.++..++++++.+.|++ +|++++..+.
T Consensus 258 ~~~~~~~~~-----------------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 319 (391)
T 3dzz_A 258 EESFFLAGI-----------------GEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN 319 (391)
T ss_dssp HHHHHHHTC-----------------SSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC
T ss_pred HHHHHhhcc-----------------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC
Confidence 110000000 00001122233333333 4566888889999999999999998 8899886443
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
....+.+.+.... . ...++.+.|. +.|+.+.++..+. +..++|++++ +++++|+++++.|.
T Consensus 320 ~~~~~~~~~~~~~---------~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~ 383 (391)
T 3dzz_A 320 ASYLAWVDISALG---------M----NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA---CPKELVIDGMQRLK 383 (391)
T ss_dssp BSSEEEEECGGGC---------S----CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC---SCHHHHHHHHHHHH
T ss_pred ceEEEEEehhhcC---------C----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHH
Confidence 3333335554311 0 1245666664 6787544333222 3578999985 57889999999999
Q ss_pred HHHHHH
Q 038818 477 EKLDGI 482 (486)
Q Consensus 477 ~~~~~l 482 (486)
++++++
T Consensus 384 ~~l~~~ 389 (391)
T 3dzz_A 384 QGVLNL 389 (391)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 988764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=226.82 Aligned_cols=315 Identities=12% Similarity=0.089 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH-HHHHHHH
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-LQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~a~~~ 191 (486)
....++++++++++|.+.+. ..+++|+|||+|+..++.+++.. ++.+++.+...|.+ +..++..
T Consensus 37 ~~~~~l~~~la~~~g~~~~~-----~~v~~~~g~t~a~~~~~~~~~~~----------gd~vi~~~~~~~~~~~~~~~~~ 101 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGY-----TSVLLQGSGSYAVEAVLGSALGP----------QDKVLIVSNGAYGARMVEMAGL 101 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSE-----EEEEEESCHHHHHHHHHHHSCCT----------TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcC-----cEEEEecChHHHHHHHHHHhcCC----------CCeEEEEeCCCccHHHHHHHHH
Confidence 44556778889999843211 25899999999998888776431 33455566677876 5677888
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|+ +++.+|++. ++.+|+++|+++|++.. .+.+|+++.++|++|.+.|+++|.++|++||+++|+|++|+.
T Consensus 102 ~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~ 172 (366)
T 1m32_A 102 MGI---AHHAYDCGE--VARPDVQAIDAILNADP----TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSF 172 (366)
T ss_dssp HTC---CEEEEECCT--TSCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred hCC---ceEEEeCCC--CCCCCHHHHHHHHhcCC----CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccc
Confidence 899 999999975 56899999999998631 144677888999999999999999999999999999999975
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCCCccc-cCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYKDWQI-TLS 349 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~-~~s 349 (486)
+....+ +.. .+.|+++.++||++++|.|+|+++++++. . +.+.. ..+|..... ..+..+.. ...
T Consensus 173 ~~~~~~-----~~~-~~~di~~~s~~K~~~~~~g~G~~~~~~~~-~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 238 (366)
T 1m32_A 173 GGIPMD-----IAA-LHIDYLISSANKCIQGVPGFAFVIAREQK-L-AACKGHSRSLSLDLY------AQWRCMEDNHGK 238 (366)
T ss_dssp TTSCCC-----TTT-TTCSEEEEESSSTTCCCSSEEEEEEEHHH-H-TTCTTCCSCSTTCHH------HHHHHHHHTTTC
T ss_pred cCcCcc-----ccc-cCccEEEecCcccccCCCceEEEEECHHH-H-HhhcCCCCCccccHH------HHHhhhcccCCC
Confidence 443221 111 15899999999999888889999987642 1 12211 111111000 00000000 011
Q ss_pred CC--CCc---hHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--Cee-EEEEEeecC-CCCCCCCC
Q 038818 350 RR--FRA---LKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFA-VVCFRVLPS-ASGLGDGK 419 (486)
Q Consensus 350 r~--~~~---l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~-~v~f~~~~~-~~~~~~~~ 419 (486)
++ ... .++..++..+...| ++++.++..++++++.+.|+++ ++++..++ ..+ +++|.+... .
T Consensus 239 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------- 310 (366)
T 1m32_A 239 WRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQ------- 310 (366)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTT-------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCC-------
Confidence 11 111 23444555554444 7888999999999999999987 78766442 344 677776420 1
Q ss_pred CccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 420 ANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
. ...++.+.|.++|+. +.+....+..++|+++. ..++++|+++++++|++++++
T Consensus 311 --~----~~~~~~~~l~~~gi~-v~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 311 --Y----RFSEFYRRLKEQGFV-IYPGKVSQSDCFRIGNI-GEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp --C----CHHHHHHHHHHTTEE-CEECCCSSSCEEEEECC-SSCCHHHHHHHHHHHHHHCTT
T ss_pred --C----CHHHHHHHHHHCCEE-EECCcCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHHh
Confidence 0 134567777777864 33333335678999985 467788999999999987654
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=228.07 Aligned_cols=356 Identities=12% Similarity=0.057 Sum_probs=226.1
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHH
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCT 153 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~a 153 (486)
|+.+.+.+++...+..+.+.+...... . .+|.......+++++++++++..... ....+++|+|||+|+..+
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~~g~t~al~~~ 75 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLG---H--TSPEFVSIFQRVLKNTRAVFKSAAAS---KSQPFVLAGSGTLGWDIF 75 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCC---T--TSHHHHHHHHHHHHHHHHHTTCCGGG---TCEEEEEESCTTHHHHHH
T ss_pred ccceeecCCCcCchHHHHHHHhccccc---c--CCHHHHHHHHHHHHHHHHHhCCCCCC---CCceEEEcCchHHHHHHH
Confidence 455677777666555555555443322 1 24555555666888888888764210 012689999999999888
Q ss_pred HHHHHHHHHHHccccCCCCeEEEecCC--CchHHHHHHHHcCCCCCCeEEEec-CCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 154 LAAARDQILNEIGRENISRLVVYGSDQ--THSALQKAAQIAGIDPKNFRAIKT-TKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 154 l~~a~~~~~~~~~~~~~~~~~v~~s~~--~H~s~~~a~~~~G~g~~~v~~v~~-d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
+.+..... .+++.|++... .|.++...++..|+ +++.+|+ +. ++.+|+++|+++|++. .
T Consensus 76 ~~~~~~~~--------~~gd~vlv~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~~d~~~l~~~l~~~-----~ 137 (385)
T 2bkw_A 76 ASNFILSK--------APNKNVLVVSTGTFSDRFADCLRSYGA---QVDVVRPLKI--GESVPLELITEKLSQN-----S 137 (385)
T ss_dssp HHHHSCTT--------CSCCEEEEECSSHHHHHHHHHHHHTTC---EEEEECCSST--TSCCCHHHHHHHHHHS-----C
T ss_pred HHHHhccC--------CCCCeEEEEcCCcchHHHHHHHHHcCC---ceEEEecCCC--CCCCCHHHHHHHHhcC-----C
Confidence 87764100 04445544433 34455577888899 9999998 64 5789999999999761 1
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCC 308 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~ 308 (486)
+.+|++++++|++|.+.|+++|+++|++| |+++|+|++|+.+....+ +... ++|++++++||++++|.|+|+
T Consensus 138 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~G~G~ 211 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-----FDEW-GVDFALTASQKAIGAPAGLSI 211 (385)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCSCEEE
T ss_pred CCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-----cccc-CceEEEecCccccccCCcceE
Confidence 34788899999999999999999999999 999999999975443221 1112 589999999999998889999
Q ss_pred EEeeCchHHHHHhc-----CCcccccCcc-CCC-CCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHH
Q 038818 309 LWVKNPNALIKALS-----TNPEFLRNKA-SDS-KQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMA 380 (486)
Q Consensus 309 ~~~~~~~~~~~~~~-----~~~~y~~~~~-~~~-~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a 380 (486)
++++++. +.+.+. ....|..... ... ............++.. ....++..+++.+...+++++.++..+++
T Consensus 212 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 290 (385)
T 2bkw_A 212 SLCSSRF-MDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS 290 (385)
T ss_dssp EEECHHH-HHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEcHHH-HHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9887653 221221 0001110000 000 0000000000000111 11123344555544456788899999999
Q ss_pred HHHHHHH-hCCCCeEEecCC-----CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE--CCEe
Q 038818 381 QLFQELV-GGDNRFEIVAPR-----NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV--AGIY 452 (486)
Q Consensus 381 ~~l~~~L-~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~ 452 (486)
+++.+.| +++ ++++..+. ..++++|.+.. ..++.+.|.++|+. +.+... .+..
T Consensus 291 ~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~-v~~g~~~~~~~~ 351 (385)
T 2bkw_A 291 DWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD-----------------PPDVIAFLKSHGVV-IAGGIHKDIGPK 351 (385)
T ss_dssp HHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC-----------------HHHHHHHHHHTTEE-CBCCCCTTTGGG
T ss_pred HHHHHHHHHhc-CceecccCcccccCCceEEEecCC-----------------HHHHHHHHHHCCeE-EeCCCCcccCCC
Confidence 9999999 888 88887421 35677776631 23566677677864 333221 1356
Q ss_pred EEEEE-ec-C-CCCcHHHHHHHHHHHHHHHHH
Q 038818 453 FIRFA-VG-A-TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 453 ~lR~~-~~-~-~~tt~~did~~i~~l~~~~~~ 481 (486)
++|++ +. + +.++++|++++++.|++++++
T Consensus 352 ~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 352 YIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp EEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 89999 53 1 246788999999999988654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-26 Score=223.06 Aligned_cols=322 Identities=12% Similarity=0.087 Sum_probs=217.0
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+.. |..+.....+..++.+++++++|.+.+ .+++|+|||+|+..++.+++.
T Consensus 29 ~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~~-------~v~~~~g~t~a~~~~~~~~~~--------- 88 (359)
T 1svv_A 29 KILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPDA-------DVHFISGGTQTNLIACSLALR--------- 88 (359)
T ss_dssp HHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTTS-------EEEEESCHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCCc-------cEEEeCCchHHHHHHHHHHhC---------
Confidence 345555555542 333344567888999999999997654 689999999999988887753
Q ss_pred CCCCeEEEecCCCchHHHH--HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH-HCCCccEEEEeecCCccccc
Q 038818 169 NISRLVVYGSDQTHSALQK--AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI-QAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~--a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~-~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..+|+++.. .++..|+ +++.+|.+ ++.+|+++|++++++.. +.+..+.+|+++.+ |++|.
T Consensus 89 --~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~ 159 (359)
T 1svv_A 89 --PWEAVIATQLGHISTHETGAIEATGH---KVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGT 159 (359)
T ss_dssp --TTEEEEEETTSHHHHSSTTHHHHTTC---CEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSC
T ss_pred --CCCEEEEcccchHHHHHHHHHhcCCC---eeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCce
Confidence 56788999999999887 4788899 99999985 56899999999998641 22334567888877 68999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHh
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~ 321 (486)
+.| +++|+++|++||+++|+|++|.++...........-++ ..+|++++++||++ .|.++|+++++++-. . .+
T Consensus 160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~~~~-~-~~ 236 (359)
T 1svv_A 160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEALIILNDALK-P-NA 236 (359)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSGGGC-T-TH
T ss_pred ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEcccHH-H-HH
Confidence 988 99999999999999999999954322111111000001 26899999999985 478889888865421 1 11
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF 401 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 401 (486)
. .+..... .....+. .... .....+..++++++.++..++++++.+.| +.+++++..+...
T Consensus 237 ~---~~~~~~~-----------~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~ 297 (359)
T 1svv_A 237 R---HLIKQRG-----------ALMAKGW--LLGI--QFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSAS 297 (359)
T ss_dssp H---HHHHHTT-----------CCCTTTH--HHHH--HHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSS
T ss_pred H---HHHhcCC-----------cccccch--hhHH--HHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCcc
Confidence 0 0000000 0000000 0111 11223455667888899999999999999 5678887655555
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.+.+. .++.+.|.++ |+.+.. ....+..++|+++ +..++++|++++++.|+++++
T Consensus 298 ~~~~~~~~-------------------~~~~~~l~~~~gi~v~~-~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 298 NQLFPILE-------------------NTMIAELNNDFDMYTVE-PLKDGTCIMRLCT-SWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp SEECBEEE-------------------HHHHHHHTTTEECEEEE-EETTTEEEEEEEC-CTTCCHHHHHHHHHHHHHC--
T ss_pred ceEEEEcC-------------------HHHHHHHHHhcCEEEEe-cccCCCceEEEEc-cCcCCHHHHHHHHHHHHHHHh
Confidence 55544432 2466777777 876522 1123578999997 467788999999999998876
Q ss_pred HH
Q 038818 481 GI 482 (486)
Q Consensus 481 ~l 482 (486)
++
T Consensus 357 ~~ 358 (359)
T 1svv_A 357 ST 358 (359)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=224.83 Aligned_cols=302 Identities=14% Similarity=0.095 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH--H
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA--A 189 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a--~ 189 (486)
..+..++++++++++| ++. .+++|+|||+|+..++.+++. +++.|+++..+|++...+ +
T Consensus 42 ~~~~~~l~~~la~~~g-~~~-------~v~~~~~gt~a~~~al~~~~~-----------~gd~vi~~~~~~~~~~~~~~~ 102 (356)
T 1v72_A 42 DELTAQVKRKFCEIFE-RDV-------EVFLVPTGTAANALCLSAMTP-----------PWGNIYCHPASHINNDECGAP 102 (356)
T ss_dssp SHHHHHHHHHHHHHHT-SCC-------EEEEESCHHHHHHHHHHTSCC-----------TTEEEEECTTSHHHHSSTTHH
T ss_pred chHHHHHHHHHHHHhC-CCC-------cEEEeCCccHHHHHHHHHhcC-----------CCCEEEEcCccchhhhhchHH
Confidence 4567788899999999 432 479999999999888877643 677888999999998776 7
Q ss_pred HHc--CCCCCCeEEEecCCCCCcccCHHHHHH-HHHHHH-HCCCccEEEEeecCCccccc---cCCchHHHHHHHHhCce
Q 038818 190 QIA--GIDPKNFRAIKTTKSSSFTLTPESLQA-AIDLDI-QAGLIPLFLCATVGTTAITT---VDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 190 ~~~--G~g~~~v~~v~~d~~~~~~~d~~~L~~-~l~~~~-~~g~~p~~vv~~~gtt~~G~---idpl~~I~~i~~~~g~~ 262 (486)
..+ |. +++.+|.+ ++.+|+++|++ ++++.. ..+..+.+|+++.++ ++|. .+++++|+++|++||++
T Consensus 103 ~~~~~g~---~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~~~~~l~~i~~~~~~~~~~ 175 (356)
T 1v72_A 103 EFFSNGA---KLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIYTLDEIEAIGDVCKSSSLG 175 (356)
T ss_dssp HHHTTSC---EEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHhCCc---EEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccCCHHHHHHHHHHHHHcCCe
Confidence 777 88 89888875 46899999999 886421 122246678888765 4999 67799999999999999
Q ss_pred EEeeccccchhccCccchhhhcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
+|+|++|+.+............++ ..+|++++++||+ +.|.|+|+++.++ +...+.. ++.... +
T Consensus 176 li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~-~~~~~~~-----~~~~~~----~---- 240 (356)
T 1v72_A 176 LHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNT-SLATEMS-----YRRKRA----G---- 240 (356)
T ss_dssp EEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSG-GGHHHHH-----HHHHHT----T----
T ss_pred EEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECH-HHHhhHH-----HHhhcc----C----
Confidence 999999975432111111111111 2689999999999 6687777887743 3332211 010000 0
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCc
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKAN 421 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 421 (486)
+. .......+...++.+..+.+.++.++..++++++.+.|++++++++..++..+.+.+.+.
T Consensus 241 ---~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~------------ 302 (356)
T 1v72_A 241 ---HL---SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------------ 302 (356)
T ss_dssp ---CC---CSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC------------
T ss_pred ---ch---hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC------------
Confidence 00 001112223344455445566778888999999999999988999876666666666552
Q ss_pred cchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 422 EGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 422 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
. ++.+.|.++|+.+..+. +. ..++|+++ ++.+++++++++++.|++++++.
T Consensus 303 ---~----~~~~~l~~~gi~v~~g~-~~-~~~iRi~~-~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 ---S----AMIDALLKAGFGFYHDR-WG-PNVVRFVT-SFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp ---H----HHHHHHHHTTCBCBCSS-SS-TTEEEEEC-CTTCCHHHHHHHHHHHHHTC---
T ss_pred ---H----HHHHHHHhcCeEEeccc-cC-CCeEEEEe-cCCCCHHHHHHHHHHHHHHHHhh
Confidence 2 45666667787543222 22 56899997 56788899999999999887654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=227.48 Aligned_cols=342 Identities=10% Similarity=0.053 Sum_probs=221.6
Q ss_pred CcceecCCCCCHHHHHHHHHHhhcCC----CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGFNV----VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAI 150 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~n~----~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~ 150 (486)
.|+++..+++.++.++ +.+...+.. ....|..++.......++++++++++|.+++ .+++|+|||+++
T Consensus 28 ~~ld~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAGMLIPDSVA-TTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-------GVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGCCCCCHHHH-HHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESCHHHHH
T ss_pred EEEeCCCcCCCCHHHH-HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCChHHHH
Confidence 4666654444444443 333333221 1123333444566777889999999998754 689999999888
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH----cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHH
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI----AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ 226 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~----~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~ 226 (486)
..++.+.... . .+++.|+++..+|.++..++.. .|. +++.+|+++ +++.+|+++|+++|+++
T Consensus 100 ~~~~~~l~~~-~-------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~v~~v~~~~-~~~~~d~~~l~~~l~~~-- 165 (406)
T 3cai_A 100 SLLAEASSSR-A-------GLGYEVIVSRLDDEANIAPWLRAAHRYGA---KVKWAEVDI-ETGELPTWQWESLISKS-- 165 (406)
T ss_dssp HHHHHHTGGG-G-------BTTCEEEEETTSCGGGTHHHHHHHHHHBC---EEEEECCCT-TTCCCCGGGHHHHCCTT--
T ss_pred HHHHHHHhhc-c-------CCCCEEEEcCCccHHHHHHHHHHHHhcCC---eEEEEecCc-ccCCcCHHHHHHHhCCC--
Confidence 7665543110 0 0566788899999886555443 688 999999873 25689999999988643
Q ss_pred CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc
Q 038818 227 AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 227 ~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~ 306 (486)
+.+|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+....+ .... ++|+++.++||+++ |. +
T Consensus 166 ----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~~-----~~d~~~~s~~K~~g-~~-~ 233 (406)
T 3cai_A 166 ----TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLD-IRET-----DADVVTVNAHAWGG-PP-I 233 (406)
T ss_dssp ----EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCC-HHHH-----CCSEEEEEGGGGTS-CS-C
T ss_pred ----ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCC-chhc-----CCCEEEeehhhhcC-CC-c
Confidence 45888999999999999999999999999999999999976544222 1211 58999999999875 65 7
Q ss_pred e-EEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC-CCCCCc-hHHHHHHHHhchH--------------HH
Q 038818 307 C-CLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL-SRRFRA-LKLWLVLRSFGVA--------------NL 369 (486)
Q Consensus 307 g-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-sr~~~~-l~~~~~l~~~g~~--------------g~ 369 (486)
| +++++++ ... .+.....+. .. . ....+.. +....+ .++..++..+... ++
T Consensus 234 G~~~~~~~~-~~~-~l~~~~~~~-~~-----~----~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 301 (406)
T 3cai_A 234 GAMVFRDPS-VMN-SFGSVSTNP-YA-----T----GPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSM 301 (406)
T ss_dssp EEEEESCHH-HHH-TSCCCCSCT-TC-----C----GGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHH
T ss_pred CeEEEEehH-HHh-hcCCcccCC-CC-----C----ccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhH
Confidence 8 7777643 322 221110000 00 0 0001111 111111 1223334433211 47
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEecCC--CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-
Q 038818 370 RNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG- 446 (486)
Q Consensus 370 ~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~- 446 (486)
+++.++..++++++.+.|+++|++++..+. ..++++|.+.+.. ..++.+.|.+.|+.+..+.
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~L~~~gi~v~~g~~ 366 (406)
T 3cai_A 302 QSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVP---------------ADRVVQRLADNGILAIANTG 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBC---------------HHHHHHHHHHTTEECEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcC---------------HHHHHHHHHHCCcEEecCCh
Confidence 788889999999999999999899887543 3567777764211 2356666767787543322
Q ss_pred -----eE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 447 -----MV---AGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 447 -----~~---~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+ .+..++|+++. ..++++|++++++.|+++
T Consensus 367 ~~~~~~~g~~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 367 SRVLDVLGVNDVGGAVTVGLA-HYSTMAEVDQLVRALASL 405 (406)
T ss_dssp CHHHHHHTTTTTTCCEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCeEEEEee-cCCCHHHHHHHHHHHHHh
Confidence 01 12468999995 567888999999998763
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=228.90 Aligned_cols=315 Identities=11% Similarity=0.112 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK---- 187 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~---- 187 (486)
.....++++.+++++|.+.+ .+++|+|||+|+..++.+.+-. ++..|+++..+|.+...
T Consensus 58 ~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~~~~~~~~~~----------~gd~vl~~~~~~~~~~~~~~~ 120 (390)
T 1elu_A 58 QQLIAQLRQALAETFNVDPN-------TITITDNVTTGCDIVLWGLDWH----------QGDEILLTDCEHPGIIAIVQA 120 (390)
T ss_dssp HHHHHHHHHHHHHHTTSCGG-------GEEEESSHHHHHHHHHHHSCCC----------TTCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHH-------HEEEeCChHHHHHHHHhCCCCC----------CCCEEEEecCcccHHHHHHHH
Confidence 35566788899999998754 6899999999998887776311 56778889999988654
Q ss_pred HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHH----HhCceE
Q 038818 188 AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAK----RYSIWV 263 (486)
Q Consensus 188 a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~----~~g~~l 263 (486)
.++..|. +++.+|++...++.+|+++|+++|++. +.+|+++.++|++|.+.|+++|.++|+ +||+++
T Consensus 121 ~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~l 191 (390)
T 1elu_A 121 IAARFGI---TYRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRV 191 (390)
T ss_dssp HHHHHCC---EEEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEE
T ss_pred HHHHhCc---EEEEEcCCCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEE
Confidence 3677899 999999863235789999999988642 457889999999999999999999999 999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~ 342 (486)
++|++|+.+....+ +.. ...|+++.++|||+++|.++|+++++++-. . .+.. ..++-..........+.+.
T Consensus 192 i~Dea~~~g~~~~~-----~~~-~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~-~-~~~~~~~g~~~~~~~~~~~~~~~~ 263 (390)
T 1elu_A 192 LVDGAQSAGSLPLD-----FSR-LEVDYYAFTGHKWFAGPAGVGGLYIHGDCL-G-EINPTYVGWRSITYGAKGEPTGWA 263 (390)
T ss_dssp EEECTTTBTTBCCC-----TTT-SCCSEEEEESSSTTCCCTTCEEEEECTTTG-G-GCCCCSCCTTTEEECTTSCEEEEC
T ss_pred EEEcccccCCcCCC-----hhh-cCCCEEEccccccccCCCceEEEEECHHhH-h-hcCCccccCCcccccccCcccccc
Confidence 99999975433221 111 258999999999999999999999986422 1 1111 0000000000000000000
Q ss_pred C--ccccCCC-CC-CchHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecC--CCeeEEEEEeecCCCCC
Q 038818 343 D--WQITLSR-RF-RALKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAP--RNFAVVCFRVLPSASGL 415 (486)
Q Consensus 343 ~--~~~~~sr-~~-~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~~~~~~~~~ 415 (486)
+ ..+..+. .. ...++..++..+...+ ++++.++..++++++.+.|++++++++..+ +..++++|.+....
T Consensus 264 ~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 340 (390)
T 1elu_A 264 EGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL--- 340 (390)
T ss_dssp SGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS---
T ss_pred cchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCC---
Confidence 0 0111111 11 1133445555554444 888899999999999999999889998753 35678888764210
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+ ..++.+.|.++|+.+.... +..++|+++ +..++++|++++++.|+++
T Consensus 341 ---------~--~~~~~~~l~~~gi~v~~~~---~~~~iRis~-~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 341 ---------G--HRAIVQKLEEQRIYLRTIA---DPDCIRACC-HYITDEEEINHLLARLADF 388 (390)
T ss_dssp ---------C--HHHHHHHHHHTTEECEEET---TTTEEEEEC-CTTCCHHHHHHHHHHHTTC
T ss_pred ---------C--HHHHHHHHHHCCEEEEecC---CCCeEEEec-ccCCCHHHHHHHHHHHHhh
Confidence 0 2356677777787543322 346899998 4577888999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=227.41 Aligned_cols=330 Identities=12% Similarity=0.093 Sum_probs=223.8
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|...+...++++.+.+|+.+.+|++... ...++|+|||+|+..++.+...
T Consensus 47 ~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~--------- 112 (388)
T 1j32_A 47 HIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA-----DNILVTNGGKQSIFNLMLAMIE--------- 112 (388)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-----hhEEEcCCHHHHHHHHHHHhcC---------
Confidence 34444444443333345555567899999999999999874321 2689999999999888777643
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc--
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-- 246 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-- 246 (486)
+++.|+++..+|+++..+++..|+ +++.+|.++++++.+|+++|++++++. +.+|+++.++|++|.+
T Consensus 113 --~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~ 181 (388)
T 1j32_A 113 --PGDEVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVYT 181 (388)
T ss_dssp --TTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCC
T ss_pred --CCCEEEEcCCCChhHHHHHHHcCC---EEEEecCCcccCCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCCC
Confidence 566788899999999999999999 999999875335789999999998642 4577888899999998
Q ss_pred -CCchHHHHHHHHhCceEEeeccccchhccCccchhhhc---CCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 247 -DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID---GIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 247 -dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~---~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
+++++|+++|++||+++|+|++|+.+............ .....|.+..++||+++.| ..+|+++.+++ ... .+
T Consensus 182 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~~-~l 259 (388)
T 1j32_A 182 PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP-LVK-AA 259 (388)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHH-HHH-HH
T ss_pred HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHH-HHH-HH
Confidence 45999999999999999999999875432111111110 0124788999999999633 34888887644 222 22
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
.....+. +.....+..++++..+ +.+.++++.++..++++++.+.|+++|++++..+
T Consensus 260 ~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~- 318 (388)
T 1j32_A 260 TKIQGHS--------------------TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKP- 318 (388)
T ss_dssp HHHHHTT--------------------TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC-
T ss_pred HHHHhhc--------------------ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC-
Confidence 1100000 0011233334433333 4567888889999999999999999888887643
Q ss_pred CeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 400 NFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 400 ~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
..+.+.+ .+.... ....++.+.+.+ .|+.+..+..+....++|+++. +++++|+++++.|++
T Consensus 319 ~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~i~~~~~~l~~ 382 (388)
T 1j32_A 319 DGAFYMFPSIAKTG-------------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA---TDLDTIKRGMERLEK 382 (388)
T ss_dssp CBTTEECCBCGGGT-------------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC---SCHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCCCC-------------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec---CCHHHHHHHHHHHHH
Confidence 3343333 332100 012456666665 5875444333333468999984 578899999999999
Q ss_pred HHHHH
Q 038818 478 KLDGI 482 (486)
Q Consensus 478 ~~~~l 482 (486)
+++++
T Consensus 383 ~l~~~ 387 (388)
T 1j32_A 383 FLHGI 387 (388)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=219.91 Aligned_cols=301 Identities=13% Similarity=0.052 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++++++++++|.+ ..+++++|++||..++.+... +++.|+++...|.++..+++.
T Consensus 108 ~~~~~~l~~~la~~~g~~---------~~i~~~sGs~a~~~al~~l~~-----------~gd~vl~~~~~h~~~~~~~~~ 167 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTT---------GAIVFSTGYMANLGIISTLAG-----------KGEYVILDADSHASIYDGCQQ 167 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHSC-----------TTCEEEEETTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCC---------ceEEecCcHHHHHHHHHHhcC-----------CCCEEEECCcccHHHHHHHHH
Confidence 456667778889998875 357778888999877766432 567888899999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|. +++.+| .+|+++|+++|++... ..+.+|+++.+.|++|.+.|+++|+++|++||+++++|++|++
T Consensus 168 ~g~---~~~~~~-------~~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~ 235 (427)
T 2w8t_A 168 GNA---EIVRFR-------HNSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSM 235 (427)
T ss_dssp SCS---EEEEEC-------TTCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCC---eeEEeC-------CCCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccc
Confidence 998 888776 3599999999975311 1356888899999999999999999999999999999999987
Q ss_pred hhccCccchhhh--cCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCCCcccc
Q 038818 272 SACICPEFRHFI--DGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 272 ~~~~~~~~~~~~--~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
+.... ..+... .++ .++|+++.++||+++. .| |+++.+++ ... .+.. ..+|...
T Consensus 236 ~~~~~-~g~~~~~~~~~~~~~di~~~s~sK~~g~-~g-G~v~~~~~-l~~-~l~~~~~~~~~~----------------- 293 (427)
T 2w8t_A 236 GFFGP-NGRGVYEAQGLEGQIDFVVGTFSKSVGT-VG-GFVVSNHP-KFE-AVRLACRPYIFT----------------- 293 (427)
T ss_dssp TTSST-TSCCHHHHTTCTTCCSEEEEESSSTTCS-CC-EEEEECCT-TGG-GGGGTCHHHHSS-----------------
T ss_pred cccCC-CCCchHhhcCCCcCCcEEEecchhhhcc-CC-CEEEeCHH-HHH-HHHHhccccccc-----------------
Confidence 65431 111111 122 3679999999999984 34 77777643 222 2211 1122211
Q ss_pred CCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCCCCCCCCCccchH
Q 038818 348 LSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSASGLGDGKANEGAN 425 (486)
Q Consensus 348 ~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~ 425 (486)
++-.. ...++..+++.+. .++++.++..++++++.+.|+++ ++++..++ ..+++.+.+.. .
T Consensus 294 ~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--------------~ 356 (427)
T 2w8t_A 294 ASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED--------------Q 356 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS--------------H
T ss_pred CCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC--------------H
Confidence 11111 1122233444332 24678888999999999999887 78876455 66777777642 2
Q ss_pred HHHHHHHHHHHhcCcEEEeeee---ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 426 ELNRKLLESINASGQLYVSHGM---VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 426 ~~~~~l~~~l~~~g~~~~~~~~---~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
....++.+.|.++|+.+..... ..+..++|+++. ..++++||+++++.|+++++++..
T Consensus 357 ~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 357 EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC-AEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHHHHHHHhCc
Confidence 3355778888888875333221 123578999985 567888999999999999887654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=226.27 Aligned_cols=301 Identities=15% Similarity=0.113 Sum_probs=210.9
Q ss_pred HHHHHHHHHH-HHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 112 TELENIVMDW-LGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~-l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
.....+++++ +++++|.+ .+++|+|||+|+..++.++.. +++.|+++..+|++...+++
T Consensus 52 ~~~~~~l~~~~la~~~~~~---------~v~~~~g~t~a~~~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~ 111 (371)
T 2e7j_A 52 TPPIHDFIHNQLPKFLGCD---------VARVTNGAREAKFAVMHSLAK-----------KDAWVVMDENCHYSSYVAAE 111 (371)
T ss_dssp -CCHHHHHHTHHHHHTTSS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC---------EEEEeCChHHHHHHHHHHHhC-----------CCCEEEEccCcchHHHHHHH
Confidence 3445667788 99999875 378999999999888887643 56788899999999999999
Q ss_pred HcCCCCCCeEEEe--cCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 191 IAGIDPKNFRAIK--TTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 191 ~~G~g~~~v~~v~--~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
..|+ +++.+| +++ ++.+|+++|++++++...+ ..+.+|+++.++|++|.+.|+++|.++|++||+++|+|++
T Consensus 112 ~~g~---~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a 185 (371)
T 2e7j_A 112 RAGL---NIALVPKTDYP--DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGA 185 (371)
T ss_dssp HTTC---EEEEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECT
T ss_pred HcCC---eEEEeecccCC--CCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECc
Confidence 9999 999999 764 4799999999999864321 2356899999999999999999999999999999999999
Q ss_pred ccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCCCcccc
Q 038818 269 YAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
|+.+....+ .... +.|+++.++||++++|.++|+++++++.. ...+.. ..++... ....
T Consensus 186 ~~~~~~~~~-~~~~-----~~di~~~s~sK~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~ 245 (371)
T 2e7j_A 186 YAIGRMPVS-LKEI-----GADFIVGSGHKSMAASGPIGVMGMKEEWA-EIVLRRSEKYKNKE-------------VELL 245 (371)
T ss_dssp TTBTTBCCC-HHHH-----TCSEEEEEHHHHSSCCSSCEEEEECTTTT-TTTTCBCSSCTTSB-------------GGGT
T ss_pred cccCCCCCC-hhhc-----CCCEEEecCCcCCCCCCCcEEEEEechhh-hhhccccccCcccc-------------cccc
Confidence 987654221 1111 57899999999999988999999986521 110111 0001100 0000
Q ss_pred CCCCCCch---HHHHHHHHhchHHHHHHHHHH--HHHHHHHHHHHhCCCCeEEecCC--CeeEEEEEeecCCCCCCCCCC
Q 038818 348 LSRRFRAL---KLWLVLRSFGVANLRNFLRSH--VRMAQLFQELVGGDNRFEIVAPR--NFAVVCFRVLPSASGLGDGKA 420 (486)
Q Consensus 348 ~sr~~~~l---~~~~~l~~~g~~g~~~~~~~~--~~~a~~l~~~L~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~~~ 420 (486)
.+ ..... ++..+++.+.. ++.++. .++++++.+.|+++ ++++..++ ..+++++.+. .
T Consensus 246 ~~-~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~--------- 309 (371)
T 2e7j_A 246 GC-TARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE-V--------- 309 (371)
T ss_dssp TC-CCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-H---------
T ss_pred cC-CcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-C---------
Confidence 11 11122 22233333211 566677 88999999999988 89887654 4567777653 1
Q ss_pred ccchHHHHHHHHHHHHhcCcEEEeeeeE-C---C--EeEEE-EEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 421 NEGANELNRKLLESINASGQLYVSHGMV-A---G--IYFIR-FAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 421 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~---~--~~~lR-~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..++.+.|.+.|+.+ .+... . + ..++| +++....+++++++++++.|+++++++
T Consensus 310 -------~~~~~~~l~~~gi~~-~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 310 -------LYEISKKAKGGRFFL-YRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp -------HHHHHHHSSSGGGHH-HHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHCCEEE-EeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 235666666667642 22110 0 2 46799 998532278889999999999988754
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-26 Score=223.88 Aligned_cols=339 Identities=13% Similarity=0.037 Sum_probs=220.0
Q ss_pred CCCCHHHHHHHHHHhhc---CCCccc---cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHH
Q 038818 82 SSGSIAGFLGEMLSSGF---NVVGFN---WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTL 154 (486)
Q Consensus 82 ~~~~~~~~~~~~l~~~~---n~~~~~---~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al 154 (486)
+.+.++.++..+...+. +++... ...++.+.++-.++++.+++++|.++.. ..+| |+|||+++..++
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~------evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNY------KVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCC------eEEEEcCchHHHHHHHH
Confidence 34555555554444332 221111 2235667788889999999999997642 5777 689999987776
Q ss_pred HHHHHHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccE
Q 038818 155 AAARDQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPL 232 (486)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~ 232 (486)
...... .+++.+++....|++. .+.++..|. .++.+|++. ++..+++.++.++++++ .
T Consensus 95 ~~l~~~---------~~Gd~v~~~~~g~~~~~~~~~a~~~G~---~~~~~~~~~--~~~~~~~~~~~~i~~~t------~ 154 (377)
T 3e77_A 95 LNLIGL---------KAGRCADYVVTGAWSAKAAEEAKKFGT---INIVHPKLG--SYTKIPDPSTWNLNPDA------S 154 (377)
T ss_dssp HHHGGG---------STTCEEEECCCSHHHHHHHHHHTTTSE---EEECSCCCS--SSCSCCCGGGCCCCTTC------S
T ss_pred HhccCC---------CCCCeEEEEECCHHHHHHHHHHHHhCC---ceEEeccCC--CcCCCCChHHhccCCCc------c
Confidence 654321 0245565666777763 334445566 677778764 34667777766665443 3
Q ss_pred EEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEee
Q 038818 233 FLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK 312 (486)
Q Consensus 233 ~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~ 312 (486)
+|.+++.+|.+|.+.|+ +|+++|+++|||++++.+....+- ...|.+++++|||+ +|.|+|++++|
T Consensus 155 lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~--------~~~~~~~~s~~K~~-gp~G~g~l~~~ 220 (377)
T 3e77_A 155 YVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDV--------SKFGVIFAGAQKNV-GSAGVTVVIVR 220 (377)
T ss_dssp CEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCG--------GGCSEEEEEGGGTT-SCTTCEEEEEE
T ss_pred EEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCch--------hhcCEEEEeccccc-CCCccEEEEEc
Confidence 78899999999999999 588999999999999887765542 13446899999999 59999999999
Q ss_pred CchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCC
Q 038818 313 NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 313 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
++.. .+.-...+.|+...... .......+-. +...++-.+++.+-.+ |++++.++..++++++++.|+++
T Consensus 221 ~~~l-~~~~~~~p~~~~~~~~~-------~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~ 292 (377)
T 3e77_A 221 DDLL-GFALRECPSVLEYKVQA-------GNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNS 292 (377)
T ss_dssp TTSC-SCCCTTSCGGGCHHHHH-------TTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHH-hhccCCCCchhhHHHHh-------hcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 7643 11111122232100000 0000001111 1224555667766666 89999999999999999999999
Q ss_pred CCeEEecC-C--Cee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHH
Q 038818 391 NRFEIVAP-R--NFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDR 466 (486)
Q Consensus 391 ~~~~~~~~-~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~ 466 (486)
|++++... + .++ +++|.+.+... . .++...+.+.+.++|+....+ ....+.+|+|++ ..+|++
T Consensus 293 ~g~~~~~~~~~~rs~~ivsf~~~~~~~-------~---~~~~~~~l~~l~~~Gi~~~~g--~~~~g~iRiS~~-~~~t~e 359 (377)
T 3e77_A 293 QGFYVCPVEPQNRSKMNIPFRIGNAKG-------D---DALEKRFLDKALELNMLSLKG--HRSVGGIRASLY-NAVTIE 359 (377)
T ss_dssp TTSEECCSCGGGBCSSEEEEEESSTTC-------C---HHHHHHHHHHHHHTTEESCBC--CTTTCSEEEECC-TTSCHH
T ss_pred CCceecCCCHHHcCCcEEEEEcCCCCC-------c---hhHHHHHHHHHHHCCcEEeCC--CCcCCEEEEECC-CCCCHH
Confidence 99986431 1 334 68999875310 0 223345666676778743222 122346999996 477888
Q ss_pred HHHHHHHHHHHHHHH
Q 038818 467 HVIAAWKVVQEKLDG 481 (486)
Q Consensus 467 did~~i~~l~~~~~~ 481 (486)
|||+++++|+++.++
T Consensus 360 dId~l~~al~~~~~~ 374 (377)
T 3e77_A 360 DVQKLAAFMKKFLEM 374 (377)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=221.23 Aligned_cols=329 Identities=10% Similarity=0.049 Sum_probs=221.6
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN 169 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 169 (486)
+.+.+...+......|...+...++++.+.+|+.+.+|++.+. ..+++|+|||+|+..++.++..
T Consensus 59 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~-----~~v~~t~g~~~al~~~~~~l~~---------- 123 (406)
T 1xi9_A 59 MKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP-----DDVRVTAAVTEALQLIFGALLD---------- 123 (406)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH-----HHEEEcCChHHHHHHHHHHhCC----------
Confidence 3444444443222345544556899999999999988765331 3789999999999888776632
Q ss_pred CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC-
Q 038818 170 ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP- 248 (486)
Q Consensus 170 ~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp- 248 (486)
+++.|+++..+|.++..+++..|+ +++.+|+++++.+.+|+++|++++++. +.+|+++.++|++|.+-|
T Consensus 124 -~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~ 193 (406)
T 1xi9_A 124 -PGDEILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYDK 193 (406)
T ss_dssp -TTCEEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCH
T ss_pred -CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCCCcCCcCCHHHHHHhhCcC------ceEEEEECCCCCCCCCcCH
Confidence 567788899999999999999999 999999875334689999999988642 456778889999999865
Q ss_pred --chHHHHHHHHhCceEEeeccccchhccCccchhhhcCC-CCC-CceeeccccccCCC-CcceEEE--eeCc---hHHH
Q 038818 249 --LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI-EGA-DSFSLNAHKWFFTT-LDCCCLW--VKNP---NALI 318 (486)
Q Consensus 249 --l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~-~~a-Dsi~~~~hK~l~~p-~~~g~~~--~~~~---~~~~ 318 (486)
+++|+++|++||+++++|++|+++.. ...... +..+ ... |.++.++||+++.| ..+|+++ .++. +...
T Consensus 194 ~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~ 271 (406)
T 1xi9_A 194 KTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHIS-PGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVRE 271 (406)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCC-HHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCC-HHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHH
Confidence 99999999999999999999987543 211111 1111 244 67888999999733 3478888 4431 3332
Q ss_pred HHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 319 KALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 319 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.+.....+.. ....+..+++...+ +.++++++.++..++++++.+.|+++|++++.
T Consensus 272 -~l~~~~~~~~---------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 329 (406)
T 1xi9_A 272 -AIDRLARIRL---------------------CPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTT 329 (406)
T ss_dssp -HHHHHHHHTC---------------------CSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECC
T ss_pred -HHHHHHHhhc---------------------CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeee
Confidence 2211000000 01222333333333 45667888899999999999999998888876
Q ss_pred cCCCeeEEEE-EeecC-CCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHH
Q 038818 397 APRNFAVVCF-RVLPS-ASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 397 ~~~~~~~v~f-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~ 471 (486)
. +..+.++| .+... . . + ..++.+.+. +.|+.+..+..+. +..++|+++. +++++|+++
T Consensus 330 ~-~~~~~~~~~~~~~~~~---------~--~--~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~---~~~~~i~~~ 392 (406)
T 1xi9_A 330 K-PQGAFYIFPKIEVGPW---------K--N--DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL---PPIEILEEA 392 (406)
T ss_dssp C-CCBSSEECCEECSCSC---------S--S--HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHH
T ss_pred c-CCeeEEEEEecCccCC---------C--C--HHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec---CCHHHHHHH
Confidence 4 44454444 44320 0 0 1 235666665 6787544333222 2568999984 688899999
Q ss_pred HHHHHHHHHHHhh
Q 038818 472 WKVVQEKLDGILA 484 (486)
Q Consensus 472 i~~l~~~~~~l~~ 484 (486)
++.|.++++++.+
T Consensus 393 ~~~l~~~l~~~~~ 405 (406)
T 1xi9_A 393 MDRFEKFMKERLK 405 (406)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=217.44 Aligned_cols=300 Identities=12% Similarity=0.074 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++++++++++|.+. .+++++||+|+..++.+... +++.|+++..+|.++..+++.
T Consensus 87 ~~~~~~l~~~la~~~~~~~---------~i~~~sGt~a~~~~l~~~~~-----------~gd~v~~~~~~~~~~~~~~~~ 146 (399)
T 3tqx_A 87 QTIHKELEKDISEFLGTDD---------TILYSSCFDANGGLFETLLG-----------PEDAIISDELNHASIIDGIRL 146 (399)
T ss_dssp BHHHHHHHHHHHHHHTCSE---------EEEESCHHHHHHTTHHHHCC-----------TTCEEEEETTCCHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHCCCc---------EEEECchHHHHHHHHHHhcC-----------CCCEEEECCcccHHHHHHHHH
Confidence 4556677788999998753 45666678898877765432 677888999999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|. +++.+|. +|+++|++++++....+..+.+|+++.++|++|.+.|+++|.++|++||+++|+|++|+.
T Consensus 147 ~g~---~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~ 216 (399)
T 3tqx_A 147 CKA---QRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAV 216 (399)
T ss_dssp CCS---EEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCC---ceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence 999 8888874 477899999988765555677899999999999999999999999999999999999964
Q ss_pred hhccCccchh--hhcC-CCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 272 SACICPEFRH--FIDG-IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 272 ~~~~~~~~~~--~~~~-~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
++... ..+. ...+ ....|.++.++||+++++.| |+++.++ ............|...
T Consensus 217 ~~~~~-~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~~~~~~~~~~~~~~------------------ 275 (399)
T 3tqx_A 217 GFIGE-NGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EIIEWLRNRSRPYLFS------------------ 275 (399)
T ss_dssp TTSST-TSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHHHHHHHHCHHHHSS------------------
T ss_pred cccCC-CCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHHHHHHHhCcceecc------------------
Confidence 33221 1111 1112 24679999999999995544 7766654 3333222212222211
Q ss_pred CCCCCchHH---HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchH
Q 038818 349 SRRFRALKL---WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGAN 425 (486)
Q Consensus 349 sr~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~ 425 (486)
.....+.+ ..++.... ++.+++.++..++++++.+.|+++ ++++. ++..+++.+.+.. .
T Consensus 276 -~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------------~ 337 (399)
T 3tqx_A 276 -NTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGD--------------A 337 (399)
T ss_dssp -CCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEEC--------------H
T ss_pred -CCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC--------------H
Confidence 01122222 33333322 567888899999999999999887 77765 5666777777653 2
Q ss_pred HHHHHHHHHHHhcCcEEEeeee----ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 426 ELNRKLLESINASGQLYVSHGM----VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 426 ~~~~~l~~~l~~~g~~~~~~~~----~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
....++.+.|.++|+.+ .+.. ..+..++|+++. ..+++++++++++.|+++++++
T Consensus 338 ~~~~~~~~~l~~~gi~v-~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 338 QLATNMADHLLQEGIYV-VGFSYPVVPMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp HHHHHHHHHHHHTTEEC-CEECTTTSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEE-eeeCCCCCCCCCceEEEEee-cCCCHHHHHHHHHHHHHHHHHh
Confidence 33457788888888753 3332 234679999984 5778889999999999998765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=219.23 Aligned_cols=311 Identities=16% Similarity=0.157 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHHHHHH--
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSALQKAA-- 189 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~-- 189 (486)
....++++++++++|.+.+ .+++|+|||+++..++.+++...... .++ .+|+++...|.++..++
T Consensus 71 ~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~al~~al~~~~~~~~~~-----~~gd~vii~~~~~~~~~~~~~~~ 138 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDG-------EVVVTDTTSINLFKVLSAALRVQATR-----SPERRVIVTETSNFPTDLYIAEG 138 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTT-------SEEECSCHHHHHHHHHHHHHHHHHHH-----STTCCEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcc-------cEEEeCChhHHHHHHHHhhccccccc-----CCCCcEEEEcCCCCCchHHHHHH
Confidence 4556788999999998754 68899999988877777665210000 033 36777878998866543
Q ss_pred --HHc--CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 190 --QIA--GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 190 --~~~--G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
+.. |+ +++.+|+ +++|+++|++ .+.+|++++++|++|.+.|+++|.++|++||+++|+
T Consensus 139 ~~~~~~~g~---~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 200 (416)
T 1qz9_A 139 LADMLQQGY---TLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIW 200 (416)
T ss_dssp HHHHHCSSC---EEEEESS---------GGGHHHHCST------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcCCc---eEEEeCc---------HHHHHHHhCC------CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEE
Confidence 334 88 8888874 5678887753 256899999999999999999999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc-eEEEeeCchHHHHHhc-CCcccccCcc-CCCCCccCCC
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC-CCLWVKNPNALIKALS-TNPEFLRNKA-SDSKQVVDYK 342 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~-g~~~~~~~~~~~~~~~-~~~~y~~~~~-~~~~~~~~~~ 342 (486)
|++|+.+....+ .... ++|++++++||+++++.++ |+++++++.. . .+. ...+|..... .+......+.
T Consensus 201 D~a~~~g~~~~~-~~~~-----~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~-~-~l~~~~~g~~g~~~~~~~~~~~~~~ 272 (416)
T 1qz9_A 201 DLAHSAGAVPVD-LHQA-----GADYAIGCTYKYLNGGPGSQAFVWVSPQLC-D-LVPQPLSGWFGHSRQFAMEPRYEPS 272 (416)
T ss_dssp ECTTTTTTSCCC-HHHH-----TCSEEEECSSSTTCCCTTCCCEEEECTTTT-T-TSCCSCCCGGGBCTTSCCCSSCCBC
T ss_pred EccccccCcCCC-hhhc-----CCCEEEecCcccCCCCCCCeEEEEECHHHH-h-ccCCCccccCccccccCCCCccCCC
Confidence 999975443221 1111 5899999999999877777 9999876532 1 111 1111111000 0000000000
Q ss_pred --CccccCC-CCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC-C--CeEEecCC----CeeEEEEEeecC
Q 038818 343 --DWQITLS-RRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD-N--RFEIVAPR----NFAVVCFRVLPS 411 (486)
Q Consensus 343 --~~~~~~s-r~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~--~~~~~~~~----~~~~v~f~~~~~ 411 (486)
......+ ... ...++..+++.+..++++++.++..++++++.+.|+++ | ++++..++ ..++++|.+..
T Consensus 273 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 351 (416)
T 1qz9_A 273 NGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE- 351 (416)
T ss_dssp SSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT-
T ss_pred cchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC-
Confidence 0011111 111 11344456666655678889999999999999999885 6 88887553 35667776531
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 412 ASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...+.+.|.++|+. +. ..+..++|+++.++.++++|++++++.|++++++.
T Consensus 352 ----------------~~~l~~~l~~~gi~-~~---~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 352 ----------------GYAVIQALIDRGVI-GD---YREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp ----------------HHHHHHHHHTTTEE-CE---EETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHhCCcE-ec---cCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 24567777778864 22 22456899998645788999999999999988654
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=219.16 Aligned_cols=326 Identities=10% Similarity=0.062 Sum_probs=221.2
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|.. ...++++++.+++++++|.+... ...++|+|||+|+..++.+...
T Consensus 48 ~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~-------- 112 (391)
T 4dq6_A 48 PCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKS-----EWLIYSPGVIPAISLLINELTK-------- 112 (391)
T ss_dssp HHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHSC--------
T ss_pred HHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcH-----HHeEEcCChHHHHHHHHHHhCC--------
Confidence 33445555555543334433 34789999999999999943221 2789999999999888776643
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC--CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT--KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d--~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
++..|+++..+|.++..+++..|. +++.+|++ .++++.+|+++|++++++ +.+|+++.++|++|.
T Consensus 113 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~v~i~~p~nptG~ 179 (391)
T 4dq6_A 113 ---ANDKIMIQEPVYSPFNSVVKNNNR---ELIISPLQKLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPVGR 179 (391)
T ss_dssp ---TTCEEEECSSCCTHHHHHHHHTTC---EEEECCCEECTTSCEECCHHHHHHHCTT-------EEEEEEESSBTTTTB
T ss_pred ---CCCEEEEcCCCCHHHHHHHHHcCC---eEEeeeeeecCCCceEeeHHHHHHHhhc-------CCEEEEECCCCCCCc
Confidence 567788999999999999999999 99999987 445678999999999875 347888899999999
Q ss_pred c---CCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCC----CCCCceeeccccccC-CCCcceEEEeeCchHH
Q 038818 246 V---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI----EGADSFSLNAHKWFF-TTLDCCCLWVKNPNAL 317 (486)
Q Consensus 246 i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~----~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~ 317 (486)
+ +++++|+++|++||+++++|++|+.+......... +..+ .....+..++||+++ ....+|+++++++...
T Consensus 180 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 258 (391)
T 4dq6_A 180 VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIP-MASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDY 258 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccC-HHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHH
Confidence 9 77999999999999999999999764432111111 1111 022366788999997 4457888888775443
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhC-CCCeE
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGG-DNRFE 394 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~ 394 (486)
.........+.. .....+...++...+ +.+.++++.++..++++++.+.|++ +|+++
T Consensus 259 ~~~~~~~~~~~~--------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 318 (391)
T 4dq6_A 259 KLLDDAFTRIDI--------------------KRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLK 318 (391)
T ss_dssp HHHHHHHHHTTC--------------------CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHhhcC--------------------CCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 221110000000 011222223322222 3456788888999999999999987 78998
Q ss_pred EecCCCeeEEE-EEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHH
Q 038818 395 IVAPRNFAVVC-FRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 395 ~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~ 470 (486)
+..+ ..+.+. +.+.... ....++.+.|.++ |+.+.++..+. +..++|++++ +++++|++
T Consensus 319 ~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~i~~ 381 (391)
T 4dq6_A 319 VRKP-EGTYLLWVDFSALG-------------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA---CPRSMLEE 381 (391)
T ss_dssp ECCC-SBSSEEEEECGGGC-------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC---SCHHHHHH
T ss_pred ecCC-CccEEEEEEhhhcC-------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc---CCHHHHHH
Confidence 8744 444444 5554311 0134667777777 87544333222 3578999985 57789999
Q ss_pred HHHHHHHHH
Q 038818 471 AWKVVQEKL 479 (486)
Q Consensus 471 ~i~~l~~~~ 479 (486)
+++.|++++
T Consensus 382 ~l~~l~~~l 390 (391)
T 4dq6_A 382 ALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=223.18 Aligned_cols=327 Identities=13% Similarity=0.075 Sum_probs=225.4
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+ ..+......|...+...++++.+.+++.+.+|++... ..+++|+|||+|+..++.+...
T Consensus 60 ~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-----~~v~~~~g~t~a~~~~~~~~~~--------- 124 (409)
T 2gb3_A 60 VFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP-----ENVLVTNGGSEAILFSFAVIAN--------- 124 (409)
T ss_dssp HHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG-----GGEEEESHHHHHHHHHHHHHCC---------
T ss_pred HHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH-----HHEEEeCCHHHHHHHHHHHhCC---------
Confidence 345555 5554433455555567899999999999988865321 2789999999999888877632
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC-
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD- 247 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id- 247 (486)
+++.|+++..+|.++..+++..|. +++.+|+++++++.+ +++|++++++. +.+|+++.++|++|.+-
T Consensus 125 --~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~-~~~l~~~l~~~------~~~v~~~~p~nptG~~~~ 192 (409)
T 2gb3_A 125 --PGDEILVLEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAI-PQNLESFINER------TKGIVLSNPCNPTGVVYG 192 (409)
T ss_dssp --TTCEEEEEESCCTHHHHHHHHHTC---EEEEEECCGGGTSCC-CTTGGGGCCTT------EEEEEEESSCTTTCCCCC
T ss_pred --CCCEEEEcCCCchhHHHHHHHcCC---EEEEeccCCCCCCcc-HHHHHHhhCcC------CeEEEECCCCCCCCCCcC
Confidence 567788899999999999999999 999999875233455 88898887642 45778889999999984
Q ss_pred --CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC
Q 038818 248 --PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 248 --pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~ 324 (486)
++++|+++|++||+++++|++|+++.... .....+.++...|.++.++||+++.| ..+|++++++++.........
T Consensus 193 ~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~ 271 (409)
T 2gb3_A 193 KDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLA 271 (409)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHH
Confidence 58999999999999999999998754321 11121334446789999999999743 348998887733332211100
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
..+ + ....+..+++...+ +.++++++.++..++++++.+.|+++ +++++..+..+
T Consensus 272 ~~~-----------------~-----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 328 (409)
T 2gb3_A 272 QGR-----------------L-----APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGA 328 (409)
T ss_dssp HHS-----------------C-----CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBS
T ss_pred hcc-----------------C-----CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCee
Confidence 000 0 11223333333443 56778888899999999999999987 78772234444
Q ss_pred EEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhc------CcEEEeeeeE-----CCEeEEEEEecCCCCcHHHHHH
Q 038818 403 VVCF-RVLPSASGLGDGKANEGANELNRKLLESINAS------GQLYVSHGMV-----AGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 403 ~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~~~~~~~-----~~~~~lR~~~~~~~tt~~did~ 470 (486)
.+.+ .+.+. + ..++.+.|.++ |+.+..+..+ .+..++|+++. +++++|++
T Consensus 329 ~~~~~~~~~~-------------~--~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~---~~~e~i~~ 390 (409)
T 2gb3_A 329 FYITAELPVE-------------D--AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV---LEKDLLSR 390 (409)
T ss_dssp SEEEEECSSS-------------C--HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC---SCHHHHHH
T ss_pred EEEEEEeCCC-------------C--HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC---CCHHHHHH
Confidence 4443 44311 1 24566677665 7654333222 13578999984 68889999
Q ss_pred HHHHHHHHHHHHhh
Q 038818 471 AWKVVQEKLDGILA 484 (486)
Q Consensus 471 ~i~~l~~~~~~l~~ 484 (486)
+++.|+++++++.+
T Consensus 391 ~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 391 AIDVLMEGLKMFCS 404 (409)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=223.09 Aligned_cols=318 Identities=11% Similarity=0.059 Sum_probs=216.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS 183 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 183 (486)
.|...+...++.+++.+++++.+|.+... ....++|+|||+|+..++.+... +++.|+++..+|.
T Consensus 73 ~y~~~~g~~~l~~~l~~~l~~~~g~~~~~----~~~i~~~~g~~~a~~~~~~~l~~-----------~gd~vl~~~~~~~ 137 (407)
T 3nra_A 73 AYTEYRGDLGIRDLLAPRLAAFTGAPVDA----RDGLIITPGTQGALFLAVAATVA-----------RGDKVAIVQPDYF 137 (407)
T ss_dssp HSCCTTCCHHHHHHHHHHHHHHHTSCCCT----TTSEEEESHHHHHHHHHHHTTCC-----------TTCEEEEEESCCT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCCcHHHHHHHHHHhCC-----------CCCEEEEcCCccc
Confidence 35455567889999999999999985310 01689999999999887766532 5677888999999
Q ss_pred HHHHHHHHcCCCCCCeEEEecCC----CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHH
Q 038818 184 ALQKAAQIAGIDPKNFRAIKTTK----SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIA 256 (486)
Q Consensus 184 s~~~a~~~~G~g~~~v~~v~~d~----~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~ 256 (486)
++..+++..|. +++.+|++. ++++.+|+++|++++++. +.+|+++.++|++|.+-| +++|+++|
T Consensus 138 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~ 208 (407)
T 3nra_A 138 ANRKLVEFFEG---EMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEEIGQIAALA 208 (407)
T ss_dssp HHHHHHHHTTC---EEEEEEBCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHcCC---EEEEeecccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCCCCCCCcccCHHHHHHHHHHH
Confidence 99999999999 999999842 136789999999999763 346788899999999988 99999999
Q ss_pred HHhCceEEeeccccchhccCccchhh--hc-CCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHF--ID-GIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~--~~-~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
++||+++++|++|+++.......... +. .....+.++.+++|+++ ....+|+++.+ +............+..
T Consensus 209 ~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~--- 284 (407)
T 3nra_A 209 ARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIARMEKLQAIVSL--- 284 (407)
T ss_dssp HHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC-HHHHHHHHHHHHHHTS---
T ss_pred HHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC-HHHHHHHHHHHhhhcc---
Confidence 99999999999998754322111111 10 11245577889999998 44567877764 3332211110000100
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeec
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~ 410 (486)
....+..+++...+ +.+.+++..++..++++++.+.|++++++++..+.....+.+.+..
T Consensus 285 ------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 346 (407)
T 3nra_A 285 ------------------RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPK 346 (407)
T ss_dssp ------------------SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCC
T ss_pred ------------------CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCC
Confidence 01122222232323 3356788888899999999999999888887644433444444432
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 411 SASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.. . ...++.+.|.+ .|+.+..+..+. +..++|++++ +++++|+++++.|.++++++.
T Consensus 347 ~~---------~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 347 LA---------V----APAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp BS---------S----CHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC---SCHHHHHHHHHHHHHHHHHHB
T ss_pred CC---------C----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHHHhh
Confidence 11 0 12355666654 487544333222 4678999985 278899999999999988764
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=218.36 Aligned_cols=323 Identities=14% Similarity=0.087 Sum_probs=221.4
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|...+...++++.+.+|+.+.+|++.+ ...+++|+|||+|+..++.+...
T Consensus 57 ~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-----~~~v~~~~g~t~al~~~~~~l~~-------- 123 (389)
T 1o4s_A 57 EPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDIS-----PDQVVVTNGAKQALFNAFMALLD-------- 123 (389)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCC-----GGGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----HHHEEEecCHHHHHHHHHHHhCC--------
Confidence 34555555555443335555556789999999999998887421 12789999999999888776532
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.++..+++..|. +++.+|.++++++.+|+++|++++++. +.+|+++.++|++|.+-
T Consensus 124 ---~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~ 191 (389)
T 1o4s_A 124 ---PGDEVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVY 191 (389)
T ss_dssp ---TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecCCccCCCCCHHHHHHhcccC------ceEEEEcCCCCCCCCCC
Confidence 567788888999999999999999 999999875335789999999988642 44677889999999996
Q ss_pred C---chHHHHHHHHhCceEEeeccccchhccCc--cchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 248 P---LGPLCDIAKRYSIWVHVDAAYAGSACICP--EFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 248 p---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~--~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
| +++|+++|++||+++++|++|+.+....+ .... +.+....|.++.++||+++.| ..+|+++++++ ... .+
T Consensus 192 ~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~-~~~-~l 268 (389)
T 1o4s_A 192 RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD-VSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK-VAT-AV 268 (389)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHH-HCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH-HHH-HH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhh-cCCCCCcEEEEeechhhcCCcccceEEEEeCHH-HHH-HH
Confidence 6 99999999999999999999987543211 1111 222246789999999999733 34888888543 322 22
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF 401 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 401 (486)
.....+. +-....+..+++...+.. +++++.++..++++++.+.|+++ ++++.. +..
T Consensus 269 ~~~~~~~--------------------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~ 325 (389)
T 1o4s_A 269 SKIQSHT--------------------TSCINTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKFVE-PEG 325 (389)
T ss_dssp HHHHHHH--------------------TCSCCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CSB
T ss_pred HHHhhhc--------------------ccCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCeeec-CCc
Confidence 1100000 001123444555555533 37778888899999999999887 777654 444
Q ss_pred eEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 402 AVV-CFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 402 ~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+.+ .+.+. . + ..++.+.|. +.|+.+..+..+...+++|+++. +++++|+++++.|.+++
T Consensus 326 ~~~~~~~~~-~-------------~--~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~---~~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 326 AFYLFFKVR-G-------------D--DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA---TSIERLTEALDRIEDFL 386 (389)
T ss_dssp SSEEEEECS-S-------------C--HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCC-C-------------C--HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe---CCHHHHHHHHHHHHHHH
Confidence 443 34443 1 1 235666665 67875444333322358999985 37789999999998876
Q ss_pred H
Q 038818 480 D 480 (486)
Q Consensus 480 ~ 480 (486)
+
T Consensus 387 ~ 387 (389)
T 1o4s_A 387 N 387 (389)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=220.32 Aligned_cols=328 Identities=12% Similarity=0.046 Sum_probs=220.3
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcc-eEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGG-GVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~-~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
.+.+.+...+......|...+...++++.+.+|+.+.+|.+... .. .++|+||++|+..++.+...
T Consensus 43 ~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-----~~~v~~~~g~~~a~~~~~~~~~~-------- 109 (389)
T 1gd9_A 43 HIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADP-----KTEIMVLLGANQAFLMGLSAFLK-------- 109 (389)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT-----TTSEEEESSTTHHHHHHHTTTCC--------
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC-----CCeEEEcCChHHHHHHHHHHhCC--------
Confidence 34445544443323345544567899999999999998863221 26 89999999999887766532
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|+++..+++..|+ +++.+|+++.+++.+|+++|++++++. +.+|+++.++|++|.+-
T Consensus 110 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~ 177 (389)
T 1gd9_A 110 ---DGEEVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVL 177 (389)
T ss_dssp ---TTCEEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCCccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcCC
Confidence 567788898999999999999999 999999875334689999999988642 44677889999999986
Q ss_pred ---CchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 248 ---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 248 ---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
++++|+++|++||+++++|++|+++.......... +.+....|.++.++||+++.| ..+|++++++ .... .+
T Consensus 178 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~-~l 255 (389)
T 1gd9_A 178 TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS-WIIE-RM 255 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH-HHHH-HH
T ss_pred CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH-HHHH-HH
Confidence 49999999999999999999998765421111111 122345788999999998744 3478888864 3322 22
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chH--HHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVA--NLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
.....+.. . ....+..+++...+ +.+ +++++.++..++++++.+.|+++ ++++..
T Consensus 256 ~~~~~~~~------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 314 (389)
T 1gd9_A 256 VKFQMYNA------------------T--CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVK 314 (389)
T ss_dssp HHHHTTTT------------------C--SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCC
T ss_pred HHHHhhhc------------------c--CCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecC
Confidence 11000000 0 11223333333333 234 67788888999999999999987 777654
Q ss_pred CCCeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHH
Q 038818 398 PRNFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 398 ~~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
+..+. +.+.+.... . + ..++.+.|. ++|+.+..+..+. +..++|+++.. ++++|+++++
T Consensus 315 -~~~~~~~~~~~~~~~---------~--~--~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~---~~~~i~~~l~ 377 (389)
T 1gd9_A 315 -PKGAFYIFPRIRDTG---------L--T--SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT---AYEKLEEAMD 377 (389)
T ss_dssp -CCBTTEECCBCGGGT---------C--C--HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS---CHHHHHHHHH
T ss_pred -CCeeeEEEEeccCCC---------C--C--HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC---CHHHHHHHHH
Confidence 33343 344443210 0 1 245677776 6787544333221 35689999853 7789999999
Q ss_pred HHHHHHHH
Q 038818 474 VVQEKLDG 481 (486)
Q Consensus 474 ~l~~~~~~ 481 (486)
.|.+++++
T Consensus 378 ~l~~~~~~ 385 (389)
T 1gd9_A 378 RMERVLKE 385 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=216.87 Aligned_cols=339 Identities=13% Similarity=0.064 Sum_probs=217.6
Q ss_pred cceecCCCCCHHHHHHHHHHhhcC----CCcccc---ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCch
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGFN----VVGFNW---MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTC 147 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~n----~~~~~~---~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt 147 (486)
.+.|.|++...|..+.+.+...+. ++...+ ..++.+.++-.++++.+++++|.++.. ..+| |+|||
T Consensus 6 ~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~------~v~f~t~~~T 79 (361)
T 3m5u_A 6 KINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDY------EVLFLQGGAS 79 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHHH
T ss_pred eEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCcHH
Confidence 455667766655555555554431 212211 225566777788999999999997542 5777 99999
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~ 227 (486)
+++..++.... . +....+|+.+..+|.+ .+.++..|+ ++..+++++++.+..+++. + |++++
T Consensus 80 ~a~n~~~~~~~-~--------~~~~~~i~~~~~~~~~-~~~a~~~G~---~v~~~~~~~~g~~~~~~~~-~--l~~~t-- 141 (361)
T 3m5u_A 80 LQFAMIPMNLA-L--------NGVCEYANTGVWTKKA-IKEAQILGV---NVKTVASSEESNFDHIPRV-E--FSDNA-- 141 (361)
T ss_dssp HHHHHHHHHHC-C--------SSCEEEEECSHHHHHH-HHHHHHTTC---CEEEEEECTTTTSCSCCCC-C--CCTTS--
T ss_pred HHHHHHHHhcC-C--------CCeEEEEeCCHHHHHH-HHHHHHcCC---ceEEEecccCcCCCcCChh-h--cCCCC--
Confidence 99877766442 1 1112345555555543 344566788 9999999864322256655 3 65443
Q ss_pred CCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcce
Q 038818 228 GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCC 307 (486)
Q Consensus 228 g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g 307 (486)
.+|.+++.+|.+|.+.|. |++ +|+++|||++++.+....+ +..+|.+++++|||++ |.|+|
T Consensus 142 ----~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id--------~~~~d~~~~s~~K~~g-p~G~g 202 (361)
T 3m5u_A 142 ----DYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVD--------FSNIALFYGGVQKNAG-ISGLS 202 (361)
T ss_dssp ----SEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCC--------CTTEEEEEEETTTTSS-CTTCE
T ss_pred ----CEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCC--------cccCCEEEEechhccC-CCccE
Confidence 378889999999998552 344 4999999999988766553 2257899999999995 99999
Q ss_pred EEEeeCchHHHHHhc-CCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHH
Q 038818 308 CLWVKNPNALIKALS-TNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 308 ~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~ 384 (486)
+++++++.. .+... ..+.|+....... . . ....+-. ....++..+++.+-.. |++++.++..+++++++
T Consensus 203 ~l~~~~~~~-~~~~~~~~p~~~~~~~~~~----~--~-~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~ 274 (361)
T 3m5u_A 203 CIFIRKDML-ERSKNKQIPSMLNYLTHAE----N--Q-SLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLY 274 (361)
T ss_dssp EEEEEHHHH-HHHHTCCCCGGGCHHHHHH----T--T-TCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEcHHHH-hhhcCCCCCceeehHHHhh----c--C-CCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 999987643 22212 2233321110000 0 0 0001111 1224555667766666 79999999999999999
Q ss_pred HHHhCCCCe-EEecCC--C-eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecC
Q 038818 385 ELVGGDNRF-EIVAPR--N-FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGA 460 (486)
Q Consensus 385 ~~L~~~~~~-~~~~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~ 460 (486)
+.|++++++ ++..++ . ..+++|.+.+.. .....+...|.++|+....+ ....+.+|+|+++
T Consensus 275 ~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~-------------~~~~~~~~~L~~~gI~~~~g--~~~~g~iRiS~~~ 339 (361)
T 3m5u_A 275 ECIDLSNGFYKGHADKKDRSLMNVSFNIAKNK-------------DLEPLFVKEAEEAGMIGLKG--HRILGGIRASIYN 339 (361)
T ss_dssp HHHHTSTTSEEESSCGGGBCSSEEEEEESSCT-------------THHHHHHHHHHHTTEECCBC--CTTTCSEEEECCT
T ss_pred HHHHHCCCeeeccCCHHHcCCeEEEEECCCch-------------hhhHHHHHHHHHCCCEEecC--CCccCeEEEEccC
Confidence 999999766 654332 2 357899886410 11135666677778643222 1222459999965
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~ 481 (486)
.+|++|||+++++|+++.++
T Consensus 340 -~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 340 -ALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp -TSCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHh
Confidence 67888999999999998765
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=218.52 Aligned_cols=332 Identities=11% Similarity=0.028 Sum_probs=221.6
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|... ..++++.+.+++++.+|.+... ...++|+||++|+..++.+...
T Consensus 48 ~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~-----~~v~~t~g~~~a~~~~~~~l~~--------- 111 (399)
T 1c7n_A 48 ELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQT-----DWIINTAGVVPAVFNAVREFTK--------- 111 (399)
T ss_dssp HHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCG-----GGEEEESSHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCCh-----hhEEEcCCHHHHHHHHHHHhcC---------
Confidence 34444444443222344333 6789999999999988853221 2689999999999888776532
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC-CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT-KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d-~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.++..+++..|. +++.+|++ +++++.+|+++|++++++. .+.+|+++.++|++|.+-
T Consensus 112 --~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~ 181 (399)
T 1c7n_A 112 --PGDGVIIITPVYYPFFMAIKNQER---KIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVW 181 (399)
T ss_dssp --TTCEEEECSSCCTHHHHHHHTTTC---EEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCC
T ss_pred --CCCEEEEcCCCcHhHHHHHHHcCC---EEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcCc
Confidence 567788899999999999999998 89999886 3234679999999998621 245677889999999998
Q ss_pred C---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCC----CCCCceeeccccccCCC-CcceEEEeeCchHHHH
Q 038818 248 P---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI----EGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIK 319 (486)
Q Consensus 248 p---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~----~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~ 319 (486)
| +++|+++|++||+++++|++|+++......... +..+ ...+.+..+++|+++.| ..+|++++++++....
T Consensus 182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 260 (399)
T 1c7n_A 182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV-FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRER 260 (399)
T ss_dssp CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc-HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHH
Confidence 8 999999999999999999999875432111111 1111 13446778899999844 4579998876544332
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEe
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGG-DNRFEIV 396 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~ 396 (486)
.......+ +. + ....+..+++...+ +.+.+++..++..++++++.+.|++ +|++++.
T Consensus 261 l~~~~~~~-----------------~~--~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 320 (399)
T 1c7n_A 261 FTKSRDAT-----------------SG--M-PFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (399)
T ss_dssp HHHHHHHT-----------------TC--C-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred HHHHHhhc-----------------cc--C-CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 21111101 00 0 11233333333332 3567788888899999999999988 7888765
Q ss_pred cCCCeeEEE-EEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHH
Q 038818 397 APRNFAVVC-FRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 397 ~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i 472 (486)
++..+.+. +.+.... . + ..++.+.|. +.|+.+..+..+. +..++|+++.. .+++|++++
T Consensus 321 -~~~~~~~~~~~~~~~~---------~--~--~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~---~~~~l~~~l 383 (399)
T 1c7n_A 321 -LIEGTYLQWIDFRALK---------M--D--HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA---PSSVIQESL 383 (399)
T ss_dssp -CCSBSSEEEEECGGGC---------C--C--HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS---CHHHHHHHH
T ss_pred -cCCceEEEEEEcccCC---------C--C--HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc---CHHHHHHHH
Confidence 34445554 5554210 0 1 235677776 6788544433222 35689999854 267999999
Q ss_pred HHHHHHHHHHhh
Q 038818 473 KVVQEKLDGILA 484 (486)
Q Consensus 473 ~~l~~~~~~l~~ 484 (486)
+.|.++++++.+
T Consensus 384 ~~l~~~l~~~~~ 395 (399)
T 1c7n_A 384 ERLNKALKDLKN 395 (399)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=215.90 Aligned_cols=337 Identities=15% Similarity=0.115 Sum_probs=219.7
Q ss_pred HHHHHHHHHhhcCCC---ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV---GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
+..+.+.+...+... .. |...+...++++.+.+++.+.+|++... ..+++|+|||+|+..++.+++.
T Consensus 51 ~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~-----~~v~~t~g~t~a~~~~~~~~~~---- 120 (407)
T 2zc0_A 51 RAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSP-----ENIVITIGGTGALDLLGRVLID---- 120 (407)
T ss_dssp HHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCG-----GGEEEESHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCc-----ceEEEecCHHHHHHHHHHHhcC----
Confidence 344555554444321 23 5444457889999999998888854221 2689999999999888877643
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEE-EeecCCcc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFL-CATVGTTA 242 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~v-v~~~gtt~ 242 (486)
++..|+++..+|.++..+++..|. +++.+|+++ + .+|+++|+++++.....+..+.+| +.+.++|+
T Consensus 121 -------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~--~-~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~np 187 (407)
T 2zc0_A 121 -------PGDVVITENPSYINTLLAFEQLGA---KIEGVPVDN--D-GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNP 187 (407)
T ss_dssp -------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEET--T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTT
T ss_pred -------CCCEEEEeCCChHHHHHHHHHcCC---EEEEcccCC--C-CCCHHHHHHHHHhhhcccCCceEEEECCCCCCC
Confidence 566788888999999999999999 999999875 3 399999999998433232234455 56788999
Q ss_pred ccccCCch---HHHHHHHHhCceEEeeccccchhccCccchhhhcCC--CCCCceeeccccccCCCCcceEEEeeCchHH
Q 038818 243 ITTVDPLG---PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI--EGADSFSLNAHKWFFTTLDCCCLWVKNPNAL 317 (486)
Q Consensus 243 ~G~idpl~---~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~--~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~ 317 (486)
+|.+.|++ +|+++|++||+++|+|++|+++......... +..+ ...+.+..+++|+++....+|+++++ ++..
T Consensus 188 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~ 265 (407)
T 2zc0_A 188 MGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVP-LKALDNEGRVIVAGTLSKVLGTGFRIGWIIAE-GEIL 265 (407)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCC-GGGGCSSCCEEEEEESTTTTCTTSCCEEEECC-HHHH
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCC-hhhcCCCCCEEEEcccccccCCCcceEEEecC-HHHH
Confidence 99998886 9999999999999999999875432111111 1111 12335677789999933458988886 3333
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--c--h-HHHHHHHHHHHHHHHHHHHHHhC-CC
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--G--V-ANLRNFLRSHVRMAQLFQELVGG-DN 391 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g--~-~g~~~~~~~~~~~a~~l~~~L~~-~~ 391 (486)
.........+ +. ....+..+++...+ + . +.++++.++..++++++.+.|++ .|
T Consensus 266 ~~~~~~~~~~-----------------~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (407)
T 2zc0_A 266 KKVLMQKQPI-----------------DF----CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLP 324 (407)
T ss_dssp HHHHHHHTTT-----------------TS----SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhh-----------------cC----CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2211100000 00 11223333333322 2 2 34566777788899999999977 57
Q ss_pred CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeEC----CEeEEEEEecCCCCcHH
Q 038818 392 RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVA----GIYFIRFAVGATLTEDR 466 (486)
Q Consensus 392 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~----~~~~lR~~~~~~~tt~~ 466 (486)
++++..+.....+.+.+.... + ..++.+.|.++ |+.+..+..+. +..++|+++..+ +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~------------~--~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~--~~~ 388 (407)
T 2zc0_A 325 NAEFTKPIAGMFVMFFLPEGA------------D--GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP--SKE 388 (407)
T ss_dssp TSCBCCCSBSSEEEEECSTTC------------C--HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS--CTT
T ss_pred CCEEecCCCcEEEEEEcCCCC------------C--HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC--CHH
Confidence 777654444445666664210 1 24567777777 87543332221 356899999644 677
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 038818 467 HVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 467 did~~i~~l~~~~~~l~~~ 485 (486)
+|+++++.|+++++++.++
T Consensus 389 ~i~~~~~~l~~~l~~~~~~ 407 (407)
T 2zc0_A 389 EIPIGIKKLAKLYKEKFGE 407 (407)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887653
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=221.09 Aligned_cols=331 Identities=12% Similarity=0.057 Sum_probs=221.3
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|... ..++++++.+|+++.+|++... ...++|+||++|+..++.+++.
T Consensus 78 ~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~-----~~v~~~~g~~ea~~~a~~~~~~--------- 141 (421)
T 3l8a_A 78 EIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVK-----EDILFIDGVVPAISIALQAFSE--------- 141 (421)
T ss_dssp HHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHSC---------
T ss_pred HHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCH-----HHEEEcCCHHHHHHHHHHHhcC---------
Confidence 34444444443333334332 3788999999999999954321 2789999999999988887643
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC-CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT-KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV- 246 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d-~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i- 246 (486)
++..|++...+|+++..++...|. +++.+|++ .++++.+|+++|++++++. .+.+|+++.++|++|.+
T Consensus 142 --~gd~Vi~~~~~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~le~~i~~~-----~~~~vil~~p~nptG~~~ 211 (421)
T 3l8a_A 142 --KGDAVLINSPVYYPFARTIRLNDH---RLVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVW 211 (421)
T ss_dssp --TEEEEEEEESCCHHHHHHHHHTTE---EEEEEECEEETTEEECCHHHHHHHHHHT-----TEEEEEEESSBTTTTBCC
T ss_pred --CCCEEEECCCCcHHHHHHHHHCCC---EEEeccccccCCCeeeCHHHHHHHhhcc-----CCeEEEECCCCCCCCCcC
Confidence 567788888999999999999999 99999986 3456789999999999742 14578889999999998
Q ss_pred --CCchHHHHHHHHhCceEEeeccccchhccCccchhhhc---CCCCCCceeeccccccC-CCCcceEEEeeCchHHHHH
Q 038818 247 --DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID---GIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 --dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~---~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~ 320 (486)
+++++|+++|++||+++++|++|+++............ .....+.+..+++|+++ ...++|++++++++.....
T Consensus 212 ~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~ 291 (421)
T 3l8a_A 212 DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKF 291 (421)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHH
Confidence 78999999999999999999999765432211111111 11234467888999997 5567899998866543321
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
......+ +......+...++..++.. +.+.++++.++..++++++.+.|+++|++++..+.
T Consensus 292 ~~~~~~~-----------------~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~- 352 (421)
T 3l8a_A 292 QYRQLAN-----------------NQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPE- 352 (421)
T ss_dssp HHHHHHT-----------------TCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCS-
T ss_pred HHHHHhc-----------------ccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCC-
Confidence 1100000 0000101111222333332 56678888899999999999999887889887543
Q ss_pred eeEEE-EEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 401 FAVVC-FRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 401 ~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+.+. +.+..... . ..++.+.|.+ .|+.+..+..+ .+.+++|+++. +++++|+++++.|+
T Consensus 353 ~~~~~~v~~~~~~~---------~----~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~i~~~l~~l~ 416 (421)
T 3l8a_A 353 GTYLVWLDFSAYAI---------A----QPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA---TPKNTVQEALSRII 416 (421)
T ss_dssp BSSEEEEECGGGTC---------C----TTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHH
T ss_pred eeEEEEEeccccCC---------C----HHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec---CCHHHHHHHHHHHH
Confidence 34444 55543110 0 1245666654 47654333222 23578999984 57889999999998
Q ss_pred HHHH
Q 038818 477 EKLD 480 (486)
Q Consensus 477 ~~~~ 480 (486)
++++
T Consensus 417 ~~l~ 420 (421)
T 3l8a_A 417 SVFG 420 (421)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 8754
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=214.89 Aligned_cols=327 Identities=10% Similarity=0.027 Sum_probs=212.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-- 184 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-- 184 (486)
.++.+.++.+++++++++++|.+ . ..++|+|||+|+..++... . +++.|+++...|++
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~-~-------~v~~~~sgt~a~~~~~~~~-~-----------~gd~vi~~~~~~~~~~ 88 (379)
T 3ke3_A 29 MSKAFQEVMNDLLSNLKTVYNAE-A-------AVIIPGSGTYGMEAVARQL-T-----------IDEDCLIIRNGWFSYR 88 (379)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCS-E-------EEEEESCHHHHHHHHHHHH-C-----------TTCEEEEEECSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC-C-------EEEEcCChhHHHHHHHHhC-C-----------CCCeEEEEeCCchhHH
Confidence 36677788889999999999987 3 5789999999987765332 1 45567777777876
Q ss_pred HHHHHHHcCCCCCCeEEEecCCCC------C-cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHH
Q 038818 185 LQKAAQIAGIDPKNFRAIKTTKSS------S-FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCD 254 (486)
Q Consensus 185 ~~~a~~~~G~g~~~v~~v~~d~~~------~-~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~ 254 (486)
+...++..|++. +++.++++..+ . +.+|+++|+++|++.. +.+|++++++|++|.+.| +++|++
T Consensus 89 ~~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~~~G~~~~~~~l~~i~~ 162 (379)
T 3ke3_A 89 WTQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDK-----SAIVYAPHVETSSGIILSEEYIKALSE 162 (379)
T ss_dssp HHHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHT-----CSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred HHHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHhhcC-----CcEEEEEeecCCCceeCCHHHHHHHHH
Confidence 345566666522 56777764310 1 2689999999996531 336888999999999999 999999
Q ss_pred HHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhc-CCcccccCcc-
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALS-TNPEFLRNKA- 332 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~-~~~~y~~~~~- 332 (486)
+|++||+++|+|++++ +....+ ... .++|.+++++||++++|.|+|+++++++.. ..... ...++.....
T Consensus 163 ~~~~~~~~li~D~~~~-g~~~~~-~~~-----~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~-~~l~~~~~~~~~~~~~~ 234 (379)
T 3ke3_A 163 AVHSVGGLLVIDCIAS-GCVWLD-MKE-----LGIDVLISAPQKGWSSTPCAGLVMLSAAAI-KKVESTESNCFSLDLKQ 234 (379)
T ss_dssp HHHHTTCEEEEECTTC-TTCCCC-HHH-----HTCSEEEECTTTTTCSCCCEEEEEECHHHH-HHHHTCCCSCSTTCHHH
T ss_pred HHHHcCCEEEEEeccc-CCcccc-ccc-----cCCCEEEecchhhcCCCCceEEEEECHHHH-HhhhcCCCCceeecHHH
Confidence 9999999999999997 433222 111 168999999999999999999999876532 22211 1122211100
Q ss_pred CCC-CCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC--eeEEEEEe
Q 038818 333 SDS-KQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN--FAVVCFRV 408 (486)
Q Consensus 333 ~~~-~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~v~f~~ 408 (486)
... ......+......+-.. ...++..++..+..+|++++.++..++++++++.|+++ +++++.++. ++++....
T Consensus 235 ~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~ 313 (379)
T 3ke3_A 235 WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSY 313 (379)
T ss_dssp HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEE
T ss_pred HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEc
Confidence 000 00000000000001111 11234455666666778899999999999999999988 788765442 44443322
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-----ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-----VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-----~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+. ... .+.+.|.++|+.+..+.. ..+...+|++++ ..+|++||++++++|+++++++.
T Consensus 314 ~~~-------------~~~--~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~-~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 314 TER-------------DDM--HKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLF-GLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp CSC-------------HHH--HSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECC-SHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCC-------------cch--HHHHHHHHCCeEEeCCccccccccCcCCEEEEeCC-cCCCHHHHHHHHHHHHHHHHHhc
Confidence 221 111 124456677875332211 112568999996 46688899999999999998775
Q ss_pred h
Q 038818 484 A 484 (486)
Q Consensus 484 ~ 484 (486)
.
T Consensus 378 ~ 378 (379)
T 3ke3_A 378 A 378 (379)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=210.95 Aligned_cols=301 Identities=11% Similarity=0.077 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++++.+++++|.+ . .+++++||+++..++.+... ++..|+++...|.++..+++..
T Consensus 90 ~~~~~l~~~la~~~g~~-~--------~i~~~sGs~a~~~~~~~~~~-----------~gd~v~~~~~~~~~~~~~~~~~ 149 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-D--------AILYSSCFDANGGLFETLLG-----------AEDAIISDALNHASIIDGVRLC 149 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-E--------EEEESCHHHHHHTTHHHHCC-----------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCC-c--------EEEeCChHHHHHHHHHHHcC-----------CCCEEEEcchhHHHHHHHHHHc
Confidence 44566778888888886 2 35666778898877666532 5668888999999999999988
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc-c
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA-G 271 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g-~ 271 (486)
|. +++.+| .+|+++|++++++....+..+.+|+++.++|++|.+.|+++|.++|++||+++++|++|+ +
T Consensus 150 g~---~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g 219 (401)
T 1fc4_A 150 KA---KRYRYA-------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVG 219 (401)
T ss_dssp CS---EEEEEC-------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTT
T ss_pred CC---ceEEEC-------CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccc
Confidence 98 888776 248999999998754433346688889999999999999999999999999999999996 4
Q ss_pred hhccCccchhhhcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 272 SACICPEFRHFIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
.............++ .+.|.++.++||+++++.| |+++.+ ++..........++... .
T Consensus 220 ~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g-G~~~~~-~~~~~~l~~~~~~~~~~-----------------~-- 278 (401)
T 1fc4_A 220 FVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAAR-KEVVEWLRQRSRPYLFS-----------------N-- 278 (401)
T ss_dssp TSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEEC-HHHHHHHHHHCHHHHHS-----------------C--
T ss_pred ccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC-EEEEcC-HHHHHHHHHhCcCceeC-----------------C--
Confidence 321111110111122 2578999999999966665 877775 44433222111112110 0
Q ss_pred CCCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 351 RFRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
....+.+++++..+.. +..++..++..++++++.+.|+++ ++++. ++..+++.+.+.. .....
T Consensus 279 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------------~~~~~ 342 (401)
T 1fc4_A 279 SLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD--------------AVVAQ 342 (401)
T ss_dssp CCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC--------------HHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC--------------hHHHH
Confidence 1122333333332211 113577888889999999999987 77766 5566777777742 22345
Q ss_pred HHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++.+.|.++|+.+ .+... .+..++|+++. ..+++++++++++.|+++++++
T Consensus 343 ~l~~~l~~~gi~v-~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 343 KFARELQKEGIYV-TGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHTTEEC-CEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCcEE-eeecCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 6777788888743 33221 13568999984 5678889999999999998765
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=213.38 Aligned_cols=324 Identities=11% Similarity=0.067 Sum_probs=219.6
Q ss_pred cccChhhHHHHHHHHHHHHHHcC----CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC
Q 038818 105 WMSSPAATELENIVMDWLGEMLK----LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g----~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~ 180 (486)
|.......++++.+.+++.+..| .+.+ .+++|+||++||..++.+.+. ++..|+++..
T Consensus 82 y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-------~v~~~~gg~~a~~~~~~~l~~-----------~gd~vl~~~p 143 (435)
T 3piu_A 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-------HLVLTAGATSANETFIFCLAD-----------PGEAVLIPTP 143 (435)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-------GEEEEEHHHHHHHHHHHHHCC-----------TTCEEEEEES
T ss_pred cCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-------HEEEcCChHHHHHHHHHHhcC-----------CCCeEEECCC
Confidence 44444567899999999987766 2333 789999999999888877643 5677888889
Q ss_pred CchHHHHHHH-HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHH
Q 038818 181 THSALQKAAQ-IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIA 256 (486)
Q Consensus 181 ~H~s~~~a~~-~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~ 256 (486)
+|.++..++. ..|. +++.+|.++++.+.+|+++|+++|++....+..+.+|+++.++|++|.+-| +++|+++|
T Consensus 144 ~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~ 220 (435)
T 3piu_A 144 YYPGFDRDLKWRTGV---EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFV 220 (435)
T ss_dssp CCTTHHHHTTTTTCC---EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHhcCC---EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHH
Confidence 9999988877 6888 999999986555789999999999886666656778889999999999855 68888999
Q ss_pred HHhCceEEeeccccchhccCccch---hhhcCC--------CCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCC
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFR---HFIDGI--------EGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~---~~~~~~--------~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~ 324 (486)
++||+++++|++|+++........ ...... .....+..++||+++ ....+|+++.+++.... .+...
T Consensus 221 ~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~-~~~~~ 299 (435)
T 3piu_A 221 EDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVA-AATKM 299 (435)
T ss_dssp HHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHH-HHHHH
T ss_pred HHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHH-HHHHH
Confidence 999999999999977543221111 111100 112266789999997 44568988886654432 22111
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG-----VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
..+.. ...+...+....+. .+.+++..++..++++++.+.|++. ++++..+.
T Consensus 300 ~~~~~----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 356 (435)
T 3piu_A 300 SSFGL----------------------VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGN 356 (435)
T ss_dssp GGGSC----------------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCC
T ss_pred hhcCC----------------------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC
Confidence 11100 01222222222221 2345667788888999999999987 88876544
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
...++.+.+.... .........++.+++.++ |+.+..+..+ .+..++|+++.. . ++++|+++++.|.
T Consensus 357 ~g~~~~~~l~~~~--------~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~-~~e~i~~~l~~l~ 426 (435)
T 3piu_A 357 AGLFCWVDMRHLL--------RSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFAN-L-PERTLDLAMQRLK 426 (435)
T ss_dssp SSSEEEEECGGGS--------SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSS-S-CHHHHHHHHHHHH
T ss_pred eeEEEEEEccccc--------ccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeC-C-CHHHHHHHHHHHH
Confidence 4356666664321 000012234677777666 7754433322 346789999843 3 7889999999999
Q ss_pred HHHHHHh
Q 038818 477 EKLDGIL 483 (486)
Q Consensus 477 ~~~~~l~ 483 (486)
++++++.
T Consensus 427 ~~l~~~~ 433 (435)
T 3piu_A 427 AFVGEYY 433 (435)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9987753
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=209.20 Aligned_cols=331 Identities=13% Similarity=0.094 Sum_probs=210.8
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN 169 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 169 (486)
+.+.+...+..+...|..++...+++ +.+++++|.+. . +++++||+|+..++.+.+..
T Consensus 19 ~~~a~~~~l~~~~~~~~~~~~~~~l~----~~la~~~~~~~--------~-i~~~sGt~al~~~l~~l~~~--------- 76 (388)
T 1b9h_A 19 ERNGLVRALEQGQWWRMGGDEVNSFE----REFAAHHGAAH--------A-LAVTNGTHALELALQVMGVG--------- 76 (388)
T ss_dssp HHHHHHHHHHTSCCBTTTCSHHHHHH----HHHHHHTTCSE--------E-EEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHcCCeeecCCHHHHHHH----HHHHHHhCCCe--------E-EEeCCHHHHHHHHHHHcCCC---------
Confidence 33444444433222344444444444 55677777652 3 44555699998887765211
Q ss_pred CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc
Q 038818 170 ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL 249 (486)
Q Consensus 170 ~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl 249 (486)
++..|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++|++. +.+|+ +++++|.+.|+
T Consensus 77 -~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l 142 (388)
T 1b9h_A 77 -PGTEVIVPAFTFISSSQAAQRLGA---VTVPVDVDAA-TYNLDPEAVAAAVTPR------TKVIM---PVHMAGLMADM 142 (388)
T ss_dssp -TTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTT-TCCBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCH
T ss_pred -CcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCC-cCCCCHHHHHHhcCcC------ceEEE---EeCCccCcCCH
Confidence 567888999999999999999999 9999999863 4789999999998643 23444 78889999999
Q ss_pred hHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH--HHHHhcCCccc
Q 038818 250 GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA--LIKALSTNPEF 327 (486)
Q Consensus 250 ~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~--~~~~~~~~~~y 327 (486)
++|.++|++||+++|+|++|+.+...... . +..+..++..+++.||+++++ .+|+++.+++.. +........ +
T Consensus 143 ~~i~~la~~~~~~li~D~a~~~g~~~~~~--~-~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~-~ 217 (388)
T 1b9h_A 143 DALAKISADTGVPLLQDAAHAHGARWQGK--R-VGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHS-C 217 (388)
T ss_dssp HHHHHHHHHHTCCBCEECTTCTTCEETTE--E-GGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTB-T
T ss_pred HHHHHHHHHcCCEEEEecchhcCCccCCe--e-cccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHh-C
Confidence 99999999999999999999765433211 1 111224777888899999876 467777776534 332211110 0
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-----CC-e
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-----RN-F 401 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-----~~-~ 401 (486)
... .....+.......+.+...+.++..+.. .+.+++.+++..++++++.+.|+++|++++..+ +. .
T Consensus 218 -~~~----~~~~~~~~~~~g~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 290 (388)
T 1b9h_A 218 -GRP----RDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSH 290 (388)
T ss_dssp -TCC----TTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCC
T ss_pred -CCC----ccCccceeecccccCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccce
Confidence 000 0000000000111112333444443332 456777888888999999999999989988652 12 4
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-C----------------------------CEe
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-A----------------------------GIY 452 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~----------------------------~~~ 452 (486)
++++|.+.+.. .....++.+.|.++|+.+...... . ...
T Consensus 291 ~~~~~~~~~~~------------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T 1b9h_A 291 YMAMFRIPGLT------------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSD 358 (388)
T ss_dssp SEEEEECTTCC------------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHH
T ss_pred EEEEEEeCCcC------------cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhC
Confidence 57777765310 112456777787888854322110 0 023
Q ss_pred EEEEEecCCCC-cHHHHHHHHHHHHHHHHH
Q 038818 453 FIRFAVGATLT-EDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 453 ~lR~~~~~~~t-t~~did~~i~~l~~~~~~ 481 (486)
.+|+++. +.+ |++|||+++++|++++++
T Consensus 359 ~l~l~~~-~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 359 CVWLHHR-VLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp EEEEEGG-GGGSCHHHHHHHHHHHHHHHHH
T ss_pred eEEecCC-CCCCCHHHHHHHHHHHHHHHhh
Confidence 6999984 567 899999999999998764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=218.21 Aligned_cols=356 Identities=13% Similarity=0.126 Sum_probs=222.7
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhcC----CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGFN----VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n----~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
..|+++..+++.++.++. .+...+. .....|..++....+..++++++++++|.+.+ .+++|+|||+|
T Consensus 19 ~~~Ld~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a 90 (432)
T 3a9z_A 19 KVYMDYNATTPLEPEVIQ-AVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ-------DIIFTSGGTES 90 (432)
T ss_dssp CEECBTTTCCCCCHHHHH-HHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESCHHHH
T ss_pred cEEeeCCccCCCCHHHHH-HHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC-------eEEEeCChHHH
Confidence 356666544444454433 3333221 11123444455667788999999999998654 68999999999
Q ss_pred HHHHHHHHHHHHHH---Hcccc------CC-CCeEEEecCCCchHHHHHHHH----cCCCCCCeEEEecCCCCCcccCHH
Q 038818 150 ILCTLAAARDQILN---EIGRE------NI-SRLVVYGSDQTHSALQKAAQI----AGIDPKNFRAIKTTKSSSFTLTPE 215 (486)
Q Consensus 150 ~~~al~~a~~~~~~---~~~~~------~~-~~~~v~~s~~~H~s~~~a~~~----~G~g~~~v~~v~~d~~~~~~~d~~ 215 (486)
+..++.++...+.. +.|.+ +. ....|+++..+|+|+..++.. .|. +++.+|+++ +++.+|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~---~v~~v~~~~-~~~~~d~~ 166 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA---EVTFVPVSK-VNGQVEVE 166 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC---EEEEECCCT-TTSSCCHH
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc---EEEEEecCc-ccCCcCHH
Confidence 99888877532211 11110 00 125788899999998766543 577 899999874 24689999
Q ss_pred HHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC----------ceEEeeccccchhccCccchhhhcC
Q 038818 216 SLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS----------IWVHVDAAYAGSACICPEFRHFIDG 285 (486)
Q Consensus 216 ~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g----------~~lhvD~a~g~~~~~~~~~~~~~~~ 285 (486)
+|++++++. +.+|+++.++|++|.+.|+++|.++|+++| +|+|+|++|+.+....+ ...
T Consensus 167 ~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~-~~~---- 235 (432)
T 3a9z_A 167 DILAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVD-VED---- 235 (432)
T ss_dssp HHHHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCC-HHH----
T ss_pred HHHHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccC-hhh----
Confidence 999988642 458899999999999999999999999999 99999999976533221 111
Q ss_pred CCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc-CCCCC-CchHHHHHHHH
Q 038818 286 IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT-LSRRF-RALKLWLVLRS 363 (486)
Q Consensus 286 ~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~sr~~-~~l~~~~~l~~ 363 (486)
.++|+++.++||+++ |. +|+++++++... ....+.+..... . .... ++... ...++..++..
T Consensus 236 -~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~---~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~a~~aal~~ 299 (432)
T 3a9z_A 236 -LGVDFLTIVGHKFYG-PR-IGALYVRGVGKL---TPLYPMLFGGGQ-----E-----RNFRPGTENTPMIAGLGKAADL 299 (432)
T ss_dssp -HCCSEEEEEGGGTTC-CS-CEEEEETTBTTT---BCCCCSCCSSCG-----G-----GGTSCSCCCHHHHHHHHHHHHH
T ss_pred -cCCCEEEEehhHhcC-Cc-ceEEEEcccccc---CCcCceeecCCc-----c-----ccccCCCcCHHHHHHHHHHHHH
Confidence 158999999999875 66 999999865311 011111111100 0 0001 11111 11223334443
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe--cC----CCe-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-
Q 038818 364 FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--AP----RNF-AVVCFRVLPSASGLGDGKANEGANELNRKLLESI- 435 (486)
Q Consensus 364 ~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~--~~----~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l- 435 (486)
+ .++++++.++..++++++.+.|++++++++. .+ ... .+++|.+..... + ...+.+.+
T Consensus 300 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~l~ 365 (432)
T 3a9z_A 300 V-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL-----------R--GYMVLAQCQ 365 (432)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC-----------C--HHHHHHHCS
T ss_pred H-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC-----------c--HHHHHHHhc
Confidence 3 4578889999999999999999886555442 32 122 367787764210 0 12233322
Q ss_pred ---HhcCcEEEeee------e--ECC------EeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 436 ---NASGQLYVSHG------M--VAG------IYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 436 ---~~~g~~~~~~~------~--~~~------~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+.|..+.... . ..| ..++|+++. ..++++|++++++.|+++++++.
T Consensus 366 ~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~-~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 366 TLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVG-RSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp SEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcC-CCCCHHHHHHHHHHHHHHHHHhc
Confidence 11222110000 0 001 268999985 57788899999999999987764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=212.44 Aligned_cols=310 Identities=13% Similarity=0.041 Sum_probs=202.1
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++.+++++|.+ .+++|+|||+|+..++.+++.. . .+++.|+++..+|+++..++...|+
T Consensus 35 ~~l~~~la~~~~~~---------~v~~~~ggt~al~~~~~~~~~~-~-------~~gd~Vl~~~~~~~~~~~~~~~~g~- 96 (375)
T 2fnu_A 35 LLFEEALCEFLGVK---------HALVFNSATSALLTLYRNFSEF-S-------ADRNEIITTPISFVATANMLLESGY- 96 (375)
T ss_dssp HHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHSSCC-C-------TTSCEEEECSSSCTHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCC---------eEEEeCCHHHHHHHHHHHhccc-C-------CCCCEEEECCCccHhHHHHHHHCCC-
Confidence 45667788888865 4799999999998888776210 0 0567889999999999999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI 275 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~ 275 (486)
+++.+|++++ +.+|+++|+++++++ +.+|+++++ +|.+.|+++|.++|++||+++|+|++|+.+...
T Consensus 97 --~~~~~~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~ 163 (375)
T 2fnu_A 97 --TPVFAGIKND--GNIDELALEKLINER------TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEY 163 (375)
T ss_dssp --EEEECCBCTT--SSBCGGGSGGGCCTT------EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE
T ss_pred --EEEEeccCCC--CCCCHHHHHhhcCcC------ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeE
Confidence 9999999863 489999999888643 335566555 899999999999999999999999999765433
Q ss_pred CccchhhhcCCCCCCceeeccccccCCCCcceEEEee-CchHHHHHhcCCcccccCccCCCCCccCCCCcc-ccCCCCCC
Q 038818 276 CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK-NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ-ITLSRRFR 353 (486)
Q Consensus 276 ~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~sr~~~ 353 (486)
.. + .+.....++..++++||+++ | |+|+++++ +++...+.... ......+. ....+. ...+.++.
T Consensus 164 ~~--~-~~~~~~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~ 230 (375)
T 2fnu_A 164 QN--K-KVGGFALASVFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLF----RSHGMLKK----DFFEGEVKSIGHNFR 230 (375)
T ss_dssp TT--E-ETTSSSSEEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHH----TBTTEEES----SSSCEEESSCCCBCC
T ss_pred CC--e-eccccCCeEEEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHH----HhcCCccc----cccccccccccccCC
Confidence 21 1 11112246667888889984 4 78888885 45443221111 00000000 000000 01111112
Q ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----CeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----NFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
...+..++.....++++++.++..++++++.+.|+++|++++..++ ...++.+.+.... . . ..
T Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~-~~ 298 (375)
T 2fnu_A 231 LNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF---------F--T-CK 298 (375)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG---------G--G-GH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc---------c--c-hH
Confidence 2233333333335678889999999999999999999899886542 1233455554210 0 0 13
Q ss_pred HHHHHHHHhcCcEEEeeee-------EC--------------CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGM-------VA--------------GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~-------~~--------------~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..+.+.|.++|+.+..... +. ...++|+++ ++.++++|+++++++|+++++++
T Consensus 299 ~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~-~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 299 KLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPC-HANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567777777864321100 00 126799998 46788889999999999988764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-23 Score=208.35 Aligned_cols=325 Identities=12% Similarity=0.065 Sum_probs=217.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCC--CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLP--KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~--~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
.|.......++++.+.+++.+.+|.+ .+ ....++++|+++++..++.+.+. ++..|+++..+
T Consensus 78 ~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~-----~~~i~~~~G~~~ai~~~~~~~~~-----------~gd~Vl~~~p~ 141 (428)
T 1iay_A 78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFD-----PERVVMAGGATGANETIIFCLAD-----------PGDAFLVPSPY 141 (428)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTCSCCC-----TTSCEEEEHHHHHHHHHHHHHCC-----------TTCEEEEESSC
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCCCCCCC-----hhhEEEccChHHHHHHHHHHhCC-----------CCCeEEEccCC
Confidence 34333346789999999999988843 11 12689999999999887776643 56678888899
Q ss_pred chHHHHHH-HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHH
Q 038818 182 HSALQKAA-QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAK 257 (486)
Q Consensus 182 H~s~~~a~-~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~ 257 (486)
|.++...+ ...|+ +++.+|.+.++++.+|+++|++++++....+..+.+|+++.++|++|.+.| +++|+++|+
T Consensus 142 y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 218 (428)
T 1iay_A 142 YPAFNRDLRWRTGV---QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN 218 (428)
T ss_dssp CTTHHHHTTTTTCC---EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCC---EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHH
Confidence 98887754 46788 899999875445789999999999876544545667888899999999999 999999999
Q ss_pred HhCceEEeeccccchhccCcc---chhhhcC----CCCCC--ceeeccccccCCC-CcceEEEeeCchHHHHHhcCCccc
Q 038818 258 RYSIWVHVDAAYAGSACICPE---FRHFIDG----IEGAD--SFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~---~~~~~~~----~~~aD--si~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+||+++++|++|+++...... ....... --..| .+..++||+++.| ..+|++++.++..... +.....+
T Consensus 219 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~-~~~~~~~ 297 (428)
T 1iay_A 219 QHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNC-ARKMSSF 297 (428)
T ss_dssp TTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHH-HHHHHTT
T ss_pred HCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHH-HHHHHhc
Confidence 999999999999874332111 1111110 00267 6788999999743 4579888866544332 2110000
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-----ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
. ....+...++...+.. +.+++..++..++++++.+.|+++ ++++..+...+
T Consensus 298 ~----------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~ 354 (428)
T 1iay_A 298 G----------------------LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGL 354 (428)
T ss_dssp S----------------------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSS
T ss_pred c----------------------cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeE
Confidence 0 0122333344444322 256677888889999999999887 77765433445
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.+.+.+..... ........++.+.|.++ |+.+..+..+. +..++|+++. ..++++++++++.|++++
T Consensus 355 ~~~~~~~~~~~--------~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 355 FCWMDLRPLLR--------ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA--NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp EEEEECGGGCS--------SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS--SSCHHHHHHHHHHHHHHH
T ss_pred EEEEechhhcC--------CCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--cCCHHHHHHHHHHHHHHH
Confidence 56666643210 00012334677888776 87544333222 2468999985 468889999999999887
Q ss_pred HH
Q 038818 480 DG 481 (486)
Q Consensus 480 ~~ 481 (486)
++
T Consensus 425 ~~ 426 (428)
T 1iay_A 425 GV 426 (428)
T ss_dssp HT
T ss_pred hc
Confidence 53
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=224.54 Aligned_cols=326 Identities=11% Similarity=0.063 Sum_probs=204.3
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 184 (486)
|..++...++|..+++++++++|++.+. ....++.++|+++|+.++.+... +++.|+++..+|.+
T Consensus 82 y~~~~~~~~le~~~~~~~a~~~g~~~~~----~~~~V~~~sGs~an~~~~~all~-----------pGD~Vl~~~~~~~~ 146 (483)
T 1rv3_A 82 YGGTEHIDELETLCQKRALQAYGLDPQC----WGVNVQPYSGSPANFAVYTALVE-----------PHGRIMGLDLPDGG 146 (483)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTT----EEEECCCSSHHHHHHHHHHHHTC-----------TTCEEEEECGGGTC
T ss_pred cCcchhHHHHHHHHHHHHHHHhCCCccc----CceEEEECCcHHHHHHHHHHhcC-----------CCCEEEEecCccCc
Confidence 4455667899999999999999997530 00124445555888776665432 67788888888876
Q ss_pred HHH--------HHHHcCCCCCCeEEEec--CCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHH
Q 038818 185 LQK--------AAQIAGIDPKNFRAIKT--TKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCD 254 (486)
Q Consensus 185 ~~~--------a~~~~G~g~~~v~~v~~--d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~ 254 (486)
+.. .+...|. .++.+++ ++ +++.+|+++|++++++.. |.+|++ ++++++ .+.|+++|++
T Consensus 147 ~~~~~~~~~~~~v~~~G~---~~~~v~~~~~~-~~~~iD~d~le~~i~~~~-----tklIi~-~~sn~~-~~~dl~~i~~ 215 (483)
T 1rv3_A 147 HLTHGFMTDKKKISATSI---FFESMAYKVNP-DTGYIDYDRLEENARLFH-----PKLIIA-GTSCYS-RNLDYGRLRK 215 (483)
T ss_dssp CGGGCCBCSSCBCSHHHH---HSEEEEECBCT-TTCSBCHHHHHHHHHHHC-----CSEEEE-CCSSCC-SCCCHHHHHH
T ss_pred CcchhhhhcccCcccccc---eEEEEECcccc-CCCcCCHHHHHHHHhhcC-----CcEEEE-eCCcCC-CcCCHHHHHH
Confidence 542 2334442 2444544 53 358999999999998431 346666 667766 8899999999
Q ss_pred HHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH-HHHHhcCCcccccCccC
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA-LIKALSTNPEFLRNKAS 333 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~-~~~~~~~~~~y~~~~~~ 333 (486)
+|+++|+++|+|+||+.+....+.....+ ..+|+++.++||++.+|.+ |+++++++.. +.........|-...
T Consensus 216 ia~~~g~~livD~ah~~g~~~~~~~~~p~---~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y~~~~-- 289 (483)
T 1rv3_A 216 IADENGAYLMADMAHISGLVVAGVVPSPF---EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLES-- 289 (483)
T ss_dssp HHHHTTCEEEEECTTTHHHHHHTSSCCGG---GTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHH--
T ss_pred HHHHcCCEEEEEccchhcccccCCCCCCC---CCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhhHHHH--
Confidence 99999999999999976554322211111 2689999999999999988 9999987521 000000000000000
Q ss_pred CCCCccCCC-CccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeec
Q 038818 334 DSKQVVDYK-DWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLP 410 (486)
Q Consensus 334 ~~~~~~~~~-~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~ 410 (486)
..+.. ....+++... ...++..++.....++++++.++..++++++.+.|.+. +++++.+. ....+.+.+.+
T Consensus 290 ----~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~ 364 (483)
T 1rv3_A 290 ----LINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRS 364 (483)
T ss_dssp ----HHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGG
T ss_pred ----HhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccC
Confidence 00000 0000111111 12344456666656788999999999999999999988 89987643 22344444433
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEe---eee--ECCEeEEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 038818 411 SASGLGDGKANEGANELNRKLLESINASGQLYVS---HGM--VAGIYFIRFAVGATLTE----DRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~--~~~~~~lR~~~~~~~tt----~~did~~i~~l~~~~~~ 481 (486)
... + ...+.+.|.+.|+.+.. +.. ..+..++|+++.. .++ ++|++++++.|.++++.
T Consensus 365 ~g~-----------~--~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~-~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 365 KGT-----------D--GGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPA-LTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp GTC-----------C--HHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHH-HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-----------C--HHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCC-cccCCCCHHHHHHHHHHHHHHHHh
Confidence 210 0 22345556667764331 221 1235689999853 445 88999999999998765
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=209.40 Aligned_cols=331 Identities=11% Similarity=0.025 Sum_probs=219.5
Q ss_pred HHHHHHHHhhcCCCccccccChhhHH-HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATE-LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~-le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+...++.....|... ..+ +++.+.+++.+.+|++.+ ....++|+||++++..++.+...
T Consensus 44 ~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~-----~~~v~~t~g~~~al~~~~~~l~~------- 109 (390)
T 1d2f_A 44 PCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAID-----SQTVVYGPSVIYMVSELIRQWSE------- 109 (390)
T ss_dssp HHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC-----GGGEEEESCHHHHHHHHHHHSSC-------
T ss_pred HHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC-----HHHEEEcCCHHHHHHHHHHHhcC-------
Confidence 345555555554433344433 567 889999999998885322 12689999999999877776532
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|++...+|.++..+++..|. +++.+|++++ +++.+|+++|++++++. .+.+|+++.++|++|.
T Consensus 110 ----~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~ 177 (390)
T 1d2f_A 110 ----TGEGVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGK 177 (390)
T ss_dssp ----TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCC
T ss_pred ----CCCEEEEcCCCcHHHHHHHHHCCC---EEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCCc
Confidence 566788888999999999999999 9999998753 24679999999998641 2456777899999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC-CC-CceeeccccccC-CCCcceEEEeeCchHHHH
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GA-DSFSLNAHKWFF-TTLDCCCLWVKNPNALIK 319 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~a-Dsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~ 319 (486)
+-| +++|+++|++||+++++|++|+.+......... +..+. .. |. ..+++|+++ ....+|+++++++.....
T Consensus 178 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 255 (390)
T 1d2f_A 178 VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDA 255 (390)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHH
Confidence 966 889999999999999999999875432111111 11121 22 55 888999997 444579998876544332
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEe
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGG-DNRFEIV 396 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~ 396 (486)
......... +.. ....+..+++...+ +.+.+++..++..++++++.+.|++ +|++++.
T Consensus 256 ~~~~~~~~~----------------~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 316 (390)
T 1d2f_A 256 YLSALKGRD----------------GLS---SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ 316 (390)
T ss_dssp HHHHHHTTS----------------CCC---SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred HHHHHhhhc----------------ccC---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe
Confidence 111000000 000 11223333333332 3566788888889999999999988 7888765
Q ss_pred cCCCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHH
Q 038818 397 APRNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 397 ~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i 472 (486)
++..+.+ .+.+.... . + ..++.+.|. +.|+.+..+..+. +..++|++++. ++++|++++
T Consensus 317 -~~~~~~~~~~~~~~~~---------~--~--~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~~l~~~l 379 (390)
T 1d2f_A 317 -IPQSTYLAWLDLRPLN---------I--D--DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC---PRSKLEKGV 379 (390)
T ss_dssp -CCSBCSEEEEECGGGC---------C--C--HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHH
T ss_pred -cCCccEEEEEEccccC---------C--C--HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC---CHHHHHHHH
Confidence 4444554 35554210 0 1 245677777 5687544433222 34689999864 467999999
Q ss_pred HHHHHHHHHH
Q 038818 473 KVVQEKLDGI 482 (486)
Q Consensus 473 ~~l~~~~~~l 482 (486)
+.|.++++++
T Consensus 380 ~~l~~~l~~~ 389 (390)
T 1d2f_A 380 AGLINAIRAV 389 (390)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=226.58 Aligned_cols=316 Identities=12% Similarity=0.070 Sum_probs=211.9
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.+..+.+++++|.+. ..++++|+|+||..++.+... +++.|+++..+|.|+..++...|+
T Consensus 208 ~~~ee~la~l~G~d~--------~i~~~~Gtt~a~~~~i~al~~-----------~GD~Vlv~~~~h~s~~~~~~~~G~- 267 (755)
T 2vyc_A 208 GESEKYAARVFGADR--------SWSVVVGTSGSNRTIMQACMT-----------DNDVVVVDRNCHKSIEQGLMLTGA- 267 (755)
T ss_dssp HHHHHHHHHHHTCSE--------EEEESSHHHHHHHHHHHHHCC-----------TTCEEEEESSCCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhCCCc--------eEEECCcHHHHHHHHHHHhcC-----------CCCEEEECCCchHHHHHHHHHcCC-
Confidence 345688999999864 457788878888877776643 677899999999999999999999
Q ss_pred CCCeEEEecCCCC---Cccc-----CHHHHHHHHHHH--H--HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 196 PKNFRAIKTTKSS---SFTL-----TPESLQAAIDLD--I--QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 196 ~~~v~~v~~d~~~---~~~~-----d~~~L~~~l~~~--~--~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
+++.++.+.++ .+.+ |+++|+++|++. + +.+..|.+|+++.+ |++|.+.|+++|+++|++||+++
T Consensus 268 --~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~l 344 (755)
T 2vyc_A 268 --KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRL 344 (755)
T ss_dssp --EEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEE
T ss_pred --EEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEE
Confidence 99999876421 1245 999999999863 2 24555667777876 68999999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCC--CCc------eeeccccccCCCCcceEEEeeCc--hHHHHHhcCCcccccCccC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEG--ADS------FSLNAHKWFFTTLDCCCLWVKNP--NALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~--aDs------i~~~~hK~l~~p~~~g~~~~~~~--~~~~~~~~~~~~y~~~~~~ 333 (486)
|||+||+++..+.+.++... .+.+ +|. ++.++||++++|.++|+++++++ ..-...+.......
T Consensus 345 ivDeA~~~~~~~~~~~~~~~-~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~----- 418 (755)
T 2vyc_A 345 HFDEAWYGYARFNPIYADHY-AMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH----- 418 (755)
T ss_dssp EEECTTCTTGGGCGGGTTSS-SSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHT-----
T ss_pred EEECcCchhcccCcccCCcc-hhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHh-----
Confidence 99999987655544332111 1124 677 99999999999999999999875 11000110000000
Q ss_pred CCCCccCCCCccccCCCC--CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC---------eEEecCCCe-
Q 038818 334 DSKQVVDYKDWQITLSRR--FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR---------FEIVAPRNF- 401 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~---------~~~~~~~~~- 401 (486)
+.+.. ....++-.+++.+..+|..+++++..++++++++.|+++++ |+++.++..
T Consensus 419 -------------~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~ 485 (755)
T 2vyc_A 419 -------------ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVT 485 (755)
T ss_dssp -------------SCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEE
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcc
Confidence 01111 11233444556565565577899999999999999988777 777654321
Q ss_pred ------------------------------------------------eEEEEEeecCCCCCCCCCCccchHHHHHHHHH
Q 038818 402 ------------------------------------------------AVVCFRVLPSASGLGDGKANEGANELNRKLLE 433 (486)
Q Consensus 402 ------------------------------------------------~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (486)
..++|...+.+. ++ +.++.+.-...+.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~---~G-~~~~~g~~~~~l~~ 561 (755)
T 2vyc_A 486 DPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGE---DG-ELEETGVPAALVTA 561 (755)
T ss_dssp CTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCT---TS-SBCSSCCCHHHHHH
T ss_pred ccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCC---CC-CccccCCcHHHHHH
Confidence 234454432110 00 00000111234555
Q ss_pred HHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 434 SINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 434 ~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.|.+.|+. +.. .+...+|+++ ++.+|++++++++++|.++.+..
T Consensus 562 ~L~~~gI~-~e~---~~~~~v~~~~-~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 562 WLGRHGIV-PTR---TTDFQIMFLF-SMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp HHHTTTCC-CSE---ECSSEEEEEC-CTTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHCCCE-Eee---cCCCeEEEEE-CCCCCHHHHHHHHHHHHHHHHhh
Confidence 66666753 221 2456789988 57889999999999999987654
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-24 Score=214.43 Aligned_cols=340 Identities=12% Similarity=0.055 Sum_probs=220.8
Q ss_pred HHHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+.+.+...+... ...|...+...++++.+.+++.+. |.+.. ....++|+|||+|+..++...+.
T Consensus 73 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~-----~~~v~~t~g~t~al~~~~~~l~~------ 140 (427)
T 3dyd_A 73 DPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLE-----AKDVILTSGCSQAIDLCLAVLAN------ 140 (427)
T ss_dssp CHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCC-----GGGEEEESSHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCC-----hHHEEEecCcHHHHHHHHHHhcC------
Confidence 334444444444322 234544455666776665555443 33221 12789999999999888777643
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
++..|+++..+|..+...++..|+ +++.+|.++.+++.+|+++|++++++. +.+|+++.++|++|.
T Consensus 141 -----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~ 206 (427)
T 3dyd_A 141 -----PGQNILVPRPGFSLYKTLAESMGI---EVKLYNLLPEKSWEIDLKQLEYLIDEK------TACLIVNNPSNPCGS 206 (427)
T ss_dssp -----TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHSSCCTT------EEEEEEESSCTTTCC
T ss_pred -----CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHhccC------CCEEEEECCCCCCCC
Confidence 567788888999999999999999 999999875446789999999988653 347888889999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCC-CCCC-ceeeccccccCCC-CcceEEEeeCc-----
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI-EGAD-SFSLNAHKWFFTT-LDCCCLWVKNP----- 314 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~-~~aD-si~~~~hK~l~~p-~~~g~~~~~~~----- 314 (486)
+-| +++|+++|++||+++++|++|+++......+... ..+ ...+ .++.+++|.++.| ..+|+++++++
T Consensus 207 ~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~-~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~ 285 (427)
T 3dyd_A 207 VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPL-ATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFG 285 (427)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCG-GGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccH-HHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhH
Confidence 999 9999999999999999999998754322111111 111 1222 3455899986543 45899988864
Q ss_pred hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 038818 315 NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE 394 (486)
Q Consensus 315 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 394 (486)
..+...+......... .......++..++.....+++.++.++..++++++.+.|+++|+++
T Consensus 286 ~~i~~~l~~~~~~~~~------------------~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 347 (427)
T 3dyd_A 286 NEIRDGLVKLSQRILG------------------PCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR 347 (427)
T ss_dssp HHHHHHHHHHHHHHCC------------------SCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHHHHHHhccCC------------------CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 1121111100000000 0001122333344434467788899999999999999999999998
Q ss_pred EecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHH
Q 038818 395 IVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 395 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
+..+.....+.+.+.....+ + .. ...++.+++. +.|+++.++..+...+++|+++. +++++|+++++
T Consensus 348 ~~~p~~g~~~~~~l~~~~~~--~---~~----~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~---~~~e~i~~~l~ 415 (427)
T 3dyd_A 348 PVRPSGAMYLMVGIEMEHFP--E---FE----NDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT---VPEVMMLEACS 415 (427)
T ss_dssp EECCSBTTEEEEEECGGGCT--T---CS----SHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC---SCHHHHHHHHH
T ss_pred ecCCCeeEEEEEecCHhhcC--C---CC----CHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC---CCHHHHHHHHH
Confidence 77554444455555421100 0 00 1234555554 66876555444445678999974 57889999999
Q ss_pred HHHHHHHHHh
Q 038818 474 VVQEKLDGIL 483 (486)
Q Consensus 474 ~l~~~~~~l~ 483 (486)
.|.++++++.
T Consensus 416 ~l~~~l~~~~ 425 (427)
T 3dyd_A 416 RIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999987754
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-23 Score=208.92 Aligned_cols=335 Identities=13% Similarity=0.086 Sum_probs=221.6
Q ss_pred HHHHHHHHHhhcCCC---ccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV---GFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
+..+.+.+...+... ...|...+...++++.+.+++.+.+|.+ .+ .+++|+||++|+..++.+..+
T Consensus 93 ~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~v~~t~G~~~al~~~~~~l~~--- 162 (448)
T 3aow_A 93 KEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDN-------DIMITSGSQQALDLIGRVFLN--- 162 (448)
T ss_dssp HHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTS-------EEEEESSHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChh-------hEEEeCcHHHHHHHHHHHHcC---
Confidence 344555555444322 1345545567889999989988888984 32 789999999999888777643
Q ss_pred HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEE-EeecCCc
Q 038818 163 NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFL-CATVGTT 241 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~v-v~~~gtt 241 (486)
+++.|++...+|.++..+++..|. +++.+|.++ + .+|+++|+++|+.....+..+.+| +.+.++|
T Consensus 163 --------~Gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~--~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~N 228 (448)
T 3aow_A 163 --------PGDIVVVEAPTYLAALQAFNFYEP---QYIQIPLDD--E-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQN 228 (448)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEET--T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred --------CCCEEEEeCCChHHHHHHHHHcCC---EEEEeccCC--C-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCC
Confidence 567788898999999999999999 999999975 3 399999999997332222235565 5678899
Q ss_pred cccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCC--CCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 242 AITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI--EGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 242 ~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~--~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
++|.+-| +++|+++|++||+++++|++|+.+......... +..+ .+.+.+..+++|+++....+|+++.++ +.
T Consensus 229 PtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~-~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~-~l 306 (448)
T 3aow_A 229 PAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKK-IKALDNEGRVIYLGTFSKILAPGFRIGWMVGDP-GI 306 (448)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCC-TGGGCTTSCEEEEEESTTTTCGGGCCEEEEECH-HH
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcC-HHhcCCCCCEEEEccchhhccccccEEEEEeCH-HH
Confidence 9999866 579999999999999999999775432111111 1111 134567778899998333589988864 33
Q ss_pred HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--c--hHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 038818 317 LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--G--VANLRNFLRSHVRMAQLFQELVGG-DN 391 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g--~~g~~~~~~~~~~~a~~l~~~L~~-~~ 391 (486)
..........+.. + ...+..+++...+ + .+.++++.++..++++++.+.|++ +|
T Consensus 307 ~~~l~~~~~~~~~------------------~---~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 365 (448)
T 3aow_A 307 IRKMEIAKQSTDL------------------C---TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMP 365 (448)
T ss_dssp HHHHHHHHHHHHS------------------S---CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcC------------------C---CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2221110000000 0 1223333333333 2 244666677777889999999986 57
Q ss_pred -CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHH
Q 038818 392 -RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDR 466 (486)
Q Consensus 392 -~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~ 466 (486)
++++..+.....+.+.+.... + ..++.+++.++|+.+..+..+ .+..++|+++.. .+++
T Consensus 366 ~g~~~~~p~~g~~~~v~~~~~~------------~--~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~--~~~e 429 (448)
T 3aow_A 366 EGVKWTKPEGGMFIWVTLPDGI------------D--SKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY--VDED 429 (448)
T ss_dssp TTCEECCCSBSSEEEEECSTTC------------C--HHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS--SCTH
T ss_pred CCeEEeCCCccEEEEEEcCCCC------------C--HHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC--CCHH
Confidence 688764444445555654210 1 245677777788765544333 235789999854 3677
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 038818 467 HVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 467 did~~i~~l~~~~~~l~~ 484 (486)
+|+++++.|.++++++.+
T Consensus 430 ~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 430 KIMEGIKRLAETIKEELK 447 (448)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999987764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=212.21 Aligned_cols=336 Identities=11% Similarity=0.041 Sum_probs=220.5
Q ss_pred HHHHHHHHHhhcCCC---ccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV---GFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
+..+.+.+...+..+ ...|...+...++++.+.+++.+.+|++ .. ....++|+||++++..++.+...
T Consensus 60 ~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-----~~~v~~t~G~~~al~~~~~~l~~--- 131 (425)
T 1vp4_A 60 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-----EDNLIFTVGSQQALDLIGKLFLD--- 131 (425)
T ss_dssp HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-----GGGEEEEEHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-----cccEEEeccHHHHHHHHHHHhCC---
Confidence 344555555544322 1344444457889999999998888854 21 12789999999999877776532
Q ss_pred HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC--CCccEEE-EeecC
Q 038818 163 NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA--GLIPLFL-CATVG 239 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~--g~~p~~v-v~~~g 239 (486)
+++.|++...+|.++..+++..|. +++.+|+++ + .+|+++|+++|++..++ +..+.+| +.+.+
T Consensus 132 --------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~--~-~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~ 197 (425)
T 1vp4_A 132 --------DESYCVLDDPAYLGAINAFRQYLA---NFVVVPLED--D-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNF 197 (425)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEET--T-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSS
T ss_pred --------CCCEEEEeCCCcHHHHHHHHHcCC---EEEEeccCC--C-CCCHHHHHHHHHhhhhcccCCCceEEEECCCC
Confidence 566788888999999999999999 999999875 3 39999999999863221 1124555 57789
Q ss_pred CccccccCC---chHHHHHHHHhCceEEeeccccchhccCc---cchhhhcCCCCCCceeeccccccCCCCcceEEEeeC
Q 038818 240 TTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICP---EFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKN 313 (486)
Q Consensus 240 tt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~---~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~ 313 (486)
+|++|.+-| +++|+++|++||+++++|++|+.+..... .... +. ....+.+..+++|+++....+|++++++
T Consensus 198 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~-~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 275 (425)
T 1vp4_A 198 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK-IG-GPERVVLLNTFSKVLAPGLRIGMVAGSK 275 (425)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH-HH-CTTTEEEEEESTTTTCGGGCEEEEECCH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHH-hC-CCCCEEEEeccccccccccceEEEeeCH
Confidence 999999966 67899999999999999999987543111 1111 11 1234567889999998334578888863
Q ss_pred chHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 314 PNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG----VANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 314 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g----~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
+...........+. . ....+..+++...+. .+.++++.++..++++++.+.|++
T Consensus 276 -~~~~~l~~~~~~~~-------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 333 (425)
T 1vp4_A 276 -EFIRKIVQAKQSAD-------------------L--CSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEE 333 (425)
T ss_dssp -HHHHHHHHHHHHHH-------------------S--SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhhhc-------------------C--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322111000000 0 012333444444332 345667777788889999999976
Q ss_pred C-C---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCC
Q 038818 390 D-N---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV----AGIYFIRFAVGAT 461 (486)
Q Consensus 390 ~-~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~ 461 (486)
. | ++++..+.....+.+.+.... . ..++.+.|.++|+.+..+..+ .+..++|+++..
T Consensus 334 ~~~~~~g~~~~~~~~g~~~~~~~~~~~----------~----~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~- 398 (425)
T 1vp4_A 334 YFSDIPGVKWVKSEGGLFIWLTLPEGF----------D----TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL- 398 (425)
T ss_dssp HSTTSTTCEECCCSBSSEEEEECCTTC----------C----TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS-
T ss_pred hCCCCCceEEecCCccEEEEEEcCCCC----------C----HHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCC-
Confidence 3 5 688765544556666664310 0 123555666668754443323 135789999964
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhh
Q 038818 462 LTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.++++++++++.|+++++++.+
T Consensus 399 -~~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 399 -PPDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999887654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=210.18 Aligned_cols=301 Identities=11% Similarity=0.032 Sum_probs=209.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 110 AATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 110 ~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
....+..++.+++++++|.+ .+++|+|||+|+..++.++.. +++.|+++..+|.+...++
T Consensus 85 g~~~~~~~l~~~la~~~g~~---------~v~~~~ggt~a~~~~~~~~~~-----------~gd~V~~~~p~~~~~~~~~ 144 (398)
T 3a2b_A 85 GTLDIHVELEEKLSAYVGKE---------AAILFSTGFQSNLGPLSCLMG-----------RNDYILLDERDHASIIDGS 144 (398)
T ss_dssp CCCHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHSSC-----------TTCEEEEETTCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEECCccCHHHHHHH
Confidence 34577788999999999863 579999999999888777643 5678889999999999999
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
+..|. +++.+|. +|+++|++++++... ..+.+|+++.++|++|.+.|+++|.++|++||+++++|++|
T Consensus 145 ~~~g~---~~~~v~~-------~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~ 212 (398)
T 3a2b_A 145 RLSFS---KVIKYGH-------NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAH 212 (398)
T ss_dssp HHSSS---EEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHcCC---ceEEeCC-------CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCC
Confidence 99999 8888874 589999999875311 13567888999999999999999999999999999999999
Q ss_pred cchhccCccchhh--hcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 270 AGSACICPEFRHF--IDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 270 g~~~~~~~~~~~~--~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
+.+... ...... ..++ +++|.++.++||+++ |.| |+++.++ +...........+...
T Consensus 213 ~~~~~~-~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~-~~~~~l~~~~~~~~~~---------------- 272 (398)
T 3a2b_A 213 SLGVIG-HKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDA-DVIDFLKHNARSVMFS---------------- 272 (398)
T ss_dssp TTTTSS-GGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECH-HHHHHHHHHCHHHHSS----------------
T ss_pred cccccC-CCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCH-HHHHHHHHhcccceec----------------
Confidence 755321 111111 1122 247999999999998 555 8877753 3332221111111110
Q ss_pred cCCCCCCch-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchH
Q 038818 347 TLSRRFRAL-KLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGAN 425 (486)
Q Consensus 347 ~~sr~~~~l-~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~ 425 (486)
++-..... .+..+++.+ +.++++.++..++++++.+.|+++ ++++. ++..+++.+.+.. +
T Consensus 273 -~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~~~~~~--------------~ 333 (398)
T 3a2b_A 273 -ASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLG-ATESPILPIFIRS--------------N 333 (398)
T ss_dssp -BCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBC-SCCSSEEEEECCC--------------H
T ss_pred -CCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEcCC--------------H
Confidence 00011111 223344432 335577888889999999999887 77765 4455666666532 2
Q ss_pred HHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 426 ELNRKLLESINASGQLYVSHGMV---AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 426 ~~~~~l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
....++.+.|.++|+.+.....+ .+..++|+++. ..+++++++++++.|+++++++
T Consensus 334 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 334 EKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLM-ATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp HHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEe-CCCCHHHHHHHHHHHHHHHHHh
Confidence 23456778888888754333221 13578999985 4568889999999999988765
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=218.90 Aligned_cols=306 Identities=12% Similarity=0.001 Sum_probs=195.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
++.+.++-.++++.+++++|.+++. ..+| |+|||+++..++..... +++.+++....|++.
T Consensus 67 ~~~~~~~~~~ar~~la~ll~~~~~~------evif~t~~~T~a~n~ai~~l~~-----------~gd~v~~~~~~~~~~- 128 (386)
T 3qm2_A 67 GKEFIQVAEEAEQDFRDLLNIPSNY------KVLFCHGGGRGQFAGVPLNLLG-----------DKTTADYVDAGYWAA- 128 (386)
T ss_dssp ------CCHHHHHHHHHHHTCCTTE------EEEEEESCTTHHHHHHHHHHCT-----------TCCEEEEEESSHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCCchHHHHHHHHhccC-----------CCCeEEEEeCCHHHH-
Confidence 4555666778999999999997532 5777 79999999877665422 233333333455553
Q ss_pred HHHHHcC-CCCCCeEEEecC--CCCCcc-cCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-CCchHHHHHHHHhCc
Q 038818 187 KAAQIAG-IDPKNFRAIKTT--KSSSFT-LTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-DPLGPLCDIAKRYSI 261 (486)
Q Consensus 187 ~a~~~~G-~g~~~v~~v~~d--~~~~~~-~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-dpl~~I~~i~~~~g~ 261 (486)
++...+. .| ++..+|++ + .+. +++++++++|++++ .+|.+++.+|.+|.+ +||++|+ +|+
T Consensus 129 ~~~~~a~~~G--~v~~v~~~~~~--~G~~~~~~~~~~~l~~~t------~lV~~~h~et~tG~~i~pi~~i~-----~g~ 193 (386)
T 3qm2_A 129 SAIKEAKKYC--APQIIDAKITV--DGKRAVKPMREWQLSDNA------AYLHYCPNETIDGIAIDETPDFG-----PEV 193 (386)
T ss_dssp HHHHHHTTTS--EEEEEECEEEE--TTEEEECCGGGCCCCTTC------SCEEECSEETTTTEECCCCCCCC-----TTC
T ss_pred HHHHHHHHhC--CeEEEecCccc--CCCCCCchHHHhhcCCCC------cEEEEECCcCCcCEecCchhhhc-----CCC
Confidence 2222222 23 58888887 3 234 78888887776544 368899999999995 9999996 799
Q ss_pred eEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 262 WVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
++|||++++.+....+- ...|.+++++|||++ |.|+|+++++++.. .+.....+.++..... ...
T Consensus 194 ~~~vDa~qs~g~~pidv--------~~~~~~~~s~hK~lG-P~G~g~l~v~~~~~-~~~~~~~p~~~~~~~~-----~~~ 258 (386)
T 3qm2_A 194 VVTADFSSTILSAPLDV--------SRYGVIYAGAQKNIG-PAGLTLVIVREDLL-GKAHESCPSILDYTVL-----NDN 258 (386)
T ss_dssp CEEEECTTTTTSSCCCG--------GGCSEEEEETTTTTC-CTTEEEEEEEGGGC-SCCCTTSCGGGCHHHH-----HHC
T ss_pred EEEEEcccccCCCCCCc--------cccCEEEEecccccC-CCccEEEEECHHHH-hhhcccCCcHHHHHHH-----hhc
Confidence 99999999887766542 133567899999995 99999999997642 1111111222110000 000
Q ss_pred CCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCCe-EEecCC--Ce-eEEEEEeecCCCCC
Q 038818 342 KDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDNRF-EIVAPR--NF-AVVCFRVLPSASGL 415 (486)
Q Consensus 342 ~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~--~~-~~v~f~~~~~~~~~ 415 (486)
. .. ..+-. +...++-.+++.+-.. |++++.++..++++++++.|+++ ++ ....++ .+ .+++|.+.+..
T Consensus 259 ~-~~-~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~--- 332 (386)
T 3qm2_A 259 D-SM-FNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNT--- 332 (386)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGG---
T ss_pred C-CC-CCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCcc---
Confidence 0 00 00111 2234566677776666 89999999999999999999988 55 322222 23 58899886421
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
....+...+.+.|+....+ ....+.+|+|+. ..+|++|||++++.|+++.++
T Consensus 333 -----------~~~~~~~~L~~~gI~~~~g--~~~~~~iRiS~~-~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 333 -----------LDKVFLEESFAAGLHALKG--HRVVGGMRASIY-NAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp -----------GHHHHHHHHHHTTEECCBC--CTTTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHCCCEEeCC--CCCcCeEEEEcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 1134555677778643222 121245999985 577888999999999998765
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=212.64 Aligned_cols=343 Identities=12% Similarity=0.034 Sum_probs=219.5
Q ss_pred HHHHHHhhcCCCc-cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHH--HHHHHHcc
Q 038818 90 LGEMLSSGFNVVG-FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAAR--DQILNEIG 166 (486)
Q Consensus 90 ~~~~l~~~~n~~~-~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~--~~~~~~~~ 166 (486)
+.+.+...+.... ..|.......++++.+.+++.+.+|++.. ....++|+|||+++..++.+.. .
T Consensus 62 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-----~~~i~~t~g~t~al~~~~~~l~~~~------- 129 (437)
T 3g0t_A 62 GIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIP-----ARACVPTVGSMQGCFVSFLVANRTH------- 129 (437)
T ss_dssp HHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESHHHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCC-----cccEEEeCCHHHHHHHHHHHHhcCC-------
Confidence 3444444443222 34544444578999999999998887533 1378999999999988877664 3
Q ss_pred ccCCCCe--EEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 167 RENISRL--VVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 167 ~~~~~~~--~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
+++ .|+++..+|.++..+++..|. +++.+|+++ +.+.+|+++|+++++.. .+.+|+++.++|++|
T Consensus 130 ----~gd~~~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG 196 (437)
T 3g0t_A 130 ----KNREYGTLFIDPGFNLNKLQCRILGQ---KFESFDLFE-YRGEKLREKLESYLQTG-----QFCSIIYSNPNNPTW 196 (437)
T ss_dssp ----TTCSCCEEEEESCCHHHHHHHHHHTC---CCEEEEGGG-GCTTHHHHHHHHHHTTT-----CCCEEEEESSCTTTC
T ss_pred ----CCCccEEEEeCCCcHhHHHHHHHcCC---EEEEEeecC-CCCccCHHHHHHHHhcC-----CceEEEEeCCCCCCC
Confidence 455 677888999999999999999 999999974 35689999999998321 134677888999999
Q ss_pred ccCC---chHHHHHHHHhCceEEeeccccchhccCc-cc---h---hhhcCCCCCCceeeccccccC-CCCcceEEEeeC
Q 038818 245 TVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICP-EF---R---HFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKN 313 (486)
Q Consensus 245 ~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~-~~---~---~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~ 313 (486)
.+-| +++|+++|++||+++++|++|+.+..... .. . ..+.+....+.++.++||+++ .+..+|+++.++
T Consensus 197 ~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 276 (437)
T 3g0t_A 197 QCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISG 276 (437)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH
T ss_pred CcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECH
Confidence 9976 77789999999999999999976433210 00 0 111222345678889999998 555688888764
Q ss_pred chHHHHHhc-CCcccccCccCCCCCccC-CCCccccCCCCCCchHHHHHHHHhchH--H---HHHHHHHHHHHHHHHHHH
Q 038818 314 PNALIKALS-TNPEFLRNKASDSKQVVD-YKDWQITLSRRFRALKLWLVLRSFGVA--N---LRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 314 ~~~~~~~~~-~~~~y~~~~~~~~~~~~~-~~~~~~~~sr~~~~l~~~~~l~~~g~~--g---~~~~~~~~~~~a~~l~~~ 386 (486)
+ ...+.+. ..+.+..... ... ........+-....+..+++...+... + ++++.++..++++++.+.
T Consensus 277 ~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (437)
T 3g0t_A 277 K-LYEREYPDLEESFGRLRF-----GEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKM 350 (437)
T ss_dssp H-HHHCBCGGGHHHHSCSBH-----HHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred H-Hhhhhhhcccccccccch-----hHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2220100 0000000000 000 000000000012233444444443222 2 788889999999999999
Q ss_pred HhCCCCeEEe------cC-CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECC--EeEEEEE
Q 038818 387 VGGDNRFEIV------AP-RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAG--IYFIRFA 457 (486)
Q Consensus 387 L~~~~~~~~~------~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~--~~~lR~~ 457 (486)
|+++ ++++. .+ .....+.+.+.+.. ..++.+.|.++|+.+........ ..++|++
T Consensus 351 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis 414 (437)
T 3g0t_A 351 FLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMD---------------SSKLIEKFVRYGMCAITLKTTGSKRNEAMRIC 414 (437)
T ss_dssp HHTT-TEEESSCEETTEECCSSSEEEEEETTCC---------------HHHHHHHHHHTTEECEESTTTTCCCTTCEEEE
T ss_pred HHHc-CCEEeccccCCCCCceeEEEEEecCCCC---------------HHHHHHHHHHcCeEEeeccccCCCCCCEEEEE
Confidence 9998 89887 34 44455666664211 24567777778875433222111 2679999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 458 VGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++ ..++++|++++++|++++++
T Consensus 415 ~~--~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 415 TS--LLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CS--SSCGGGHHHHHHHHHHHHHH
T ss_pred Ee--cCCHHHHHHHHHHHHHHHhc
Confidence 85 33777999999999988753
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=210.61 Aligned_cols=328 Identities=11% Similarity=0.093 Sum_probs=217.9
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+...+......|...+...++++.+.+|+.+.+|.+.+ .. ..++|+||++++..++.+...
T Consensus 46 ~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-----~~~~v~~~~g~~~a~~~~~~~~~~------- 113 (386)
T 1u08_A 46 RYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD-----ADSDITVTAGATEALYAAITALVR------- 113 (386)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC-----TTTTEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----CCCCEEEcCChHHHHHHHHHHhCC-------
Confidence 34555555554332334555455789999999999999887532 12 589999999999887776532
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..+|.++..+++..|. +++.+|+++. ++.+|+++|++++++. +.+|+++.++|++|.+
T Consensus 114 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~ 179 (386)
T 1u08_A 114 ----NGDEVICFDPSYDSYAPAIALSGG---IVKRMALQPP-HFRVDWQEFAALLSER------TRLVILNTPHNPSATV 179 (386)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCTT-TCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEeCCCchhHHHHHHHcCC---EEEEeecCcc-cCcCCHHHHHHhhccc------CEEEEEeCCCCCCCcc
Confidence 566788888999999999999999 9999999753 4789999999988532 4577788999999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhc--CCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID--GIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~--~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
-| +++|+++|++||+++++|++|+.+............ +....|.++.++||+++.| ..+|+++++++ ... .
T Consensus 180 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~-~ 257 (386)
T 1u08_A 180 WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAP-ISA-E 257 (386)
T ss_dssp CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHH-HHH-H
T ss_pred CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHH-HHH-H
Confidence 75 689999999999999999999774332111111110 0125788999999999743 34888887643 322 2
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
+.....+.. + ..+ .....++..+++. +.++++++.++..++++++.+.|+++ ++++..+..
T Consensus 258 l~~~~~~~~--------------~--~~~-~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 318 (386)
T 1u08_A 258 IRKVHQYLT--------------F--SVN-TPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNES-RLEILPCEG 318 (386)
T ss_dssp HHHHHHHHT--------------S--SCC-HHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCB
T ss_pred HHHHHHhhc--------------c--CCC-hHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCc
Confidence 211000000 0 000 0111222233332 35678888899999999999999987 888764443
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
...+.+.+.... .. ...++.+.+. +.|+.+..+..+ .+..++|+++. +++++|+++++.|
T Consensus 319 g~~~~~~~~~~~--------~~----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~---~~~~~i~~~~~~l 383 (386)
T 1u08_A 319 TYFLLVDYSAVS--------TL----DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKESTLLAAAERL 383 (386)
T ss_dssp SSEEEEECTTTC--------CS----CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCHHHHHHHHHHH
T ss_pred eEEEEEecCCCC--------CC----CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc---CCHHHHHHHHHHH
Confidence 445666654310 00 0235666665 568754433322 24578999985 3788999999988
Q ss_pred HH
Q 038818 476 QE 477 (486)
Q Consensus 476 ~~ 477 (486)
++
T Consensus 384 ~~ 385 (386)
T 1u08_A 384 RQ 385 (386)
T ss_dssp TT
T ss_pred hh
Confidence 64
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-23 Score=205.34 Aligned_cols=326 Identities=14% Similarity=0.072 Sum_probs=215.2
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|.......++++.+.+++.+.+|.+.. ....++|+|||+|+..++.+...
T Consensus 47 ~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~v~~t~g~~~al~~~~~~l~~-------- 113 (391)
T 3h14_A 47 RGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLD-----PGRVVITPGSSGGFLLAFTALFD-------- 113 (391)
T ss_dssp HHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC-----HHHEEEecChHHHHHHHHHHhcC--------
Confidence 34555666556544445555455688999999999999986532 13789999999999887776543
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.++...++..|+ +++.+|+++++++.+|+++|+++ + +.+|+++.++|++|.+-
T Consensus 114 ---~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~---~------~~~v~i~~p~nptG~~~ 178 (391)
T 3h14_A 114 ---SGDRVGIGAPGYPSYRQILRALGL---VPVDLPTAPENRLQPVPADFAGL---D------LAGLMVASPANPTGTML 178 (391)
T ss_dssp ---TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECCGGGTTSCCHHHHTTS---C------CSEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCcccCCCCCHHHHHhc---C------CeEEEECCCCCCCCccC
Confidence 566788888999999999999999 99999998655578899999876 1 34788889999999998
Q ss_pred C---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcC
Q 038818 248 P---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALST 323 (486)
Q Consensus 248 p---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~ 323 (486)
| +++|+++|++||+++++|++|+.+..... ..... .....+.++.+++|+++ .+.++|+++.+++ ........
T Consensus 179 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~ 255 (391)
T 3h14_A 179 DHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTAL-ELTDECYVINSFSKYFSMTGWRVGWMVVPED-QVRVVERI 255 (391)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGG-GTCSSSEEEEESSSTTCCTTSCCEEEECCGG-GHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChh-hcCCCEEEEEechhccCCccceeEEEEeCHH-HHHHHHHH
Confidence 7 88999999999999999999976543211 11111 12244566778999997 5567888887654 22211110
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
...+. -....+..++++..+ +.+.+++..++..++++++.+.|+++ ++....++..+
T Consensus 256 ~~~~~---------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~ 313 (391)
T 3h14_A 256 AQNMF---------------------ICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGA 313 (391)
T ss_dssp HHHTT---------------------CCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBT
T ss_pred Hhhhc---------------------cCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCee
Confidence 00000 011223333333332 56778888899999999999999887 44443344444
Q ss_pred EE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeEC---CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 403 VV-CFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVA---GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 403 ~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~---~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
.+ .+.+.... . ...++.+.+.++ |+.+.++..+. +..++|+++.. ++++|+++++.|++
T Consensus 314 ~~~~~~~~~~~---------~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~---~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 314 FYVYADVSDLT---------D----DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR---ATADIEEGLDRLEA 377 (391)
T ss_dssp TEEEEECTTTC---------S----CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS---CHHHHHHHHHHHHH
T ss_pred EEEEEecCccC---------C----CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC---CHHHHHHHHHHHHH
Confidence 33 33443211 0 123566666554 87544433322 36789999853 67899999999999
Q ss_pred HHHHH
Q 038818 478 KLDGI 482 (486)
Q Consensus 478 ~~~~l 482 (486)
++++.
T Consensus 378 ~~~~~ 382 (391)
T 3h14_A 378 FMQAR 382 (391)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 88754
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=209.61 Aligned_cols=331 Identities=9% Similarity=0.061 Sum_probs=222.4
Q ss_pred CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC
Q 038818 101 VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180 (486)
Q Consensus 101 ~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~ 180 (486)
....|..+++..++++.+.+++.+..|.+.. ....++|+||++++..++.+.... +++.|+++..
T Consensus 126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~~----------~gd~Vlv~~p 190 (500)
T 3tcm_A 126 ATGAYSHSQGIHGLRDAIASGIASRDGFPAN-----ADDIFLTDGASPGVHLMMQLLIRN----------EKDGILVPIP 190 (500)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCC-----GGGEEEESSSHHHHHHHHHHHCCS----------TTEEEEEEES
T ss_pred cCCCcCCCcChHHHHHHHHHHHHhhcCCCCC-----cccEEEcCCHHHHHHHHHHHHcCC----------CCCEEEEeCC
Confidence 3456777777889999999999999886533 137899999999998777765411 6778999999
Q ss_pred CchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHH
Q 038818 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAK 257 (486)
Q Consensus 181 ~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~ 257 (486)
+|.++..+++..|. +++.+|++++++|.+|+++|+++|++...+|..+.+|+++.++|+||.+-+ +++|+++|+
T Consensus 191 ~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 191 QYPLYSASIALHGG---ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp CCTHHHHHHHHTTC---EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 99999999999999 999999987667899999999999987766667778888899999999854 677788899
Q ss_pred HhCceEEeeccccchhccCc----cchhhhcCC----CCCCce-eeccccccC--CCCcceEEEee--CchHHHHHhcCC
Q 038818 258 RYSIWVHVDAAYAGSACICP----EFRHFIDGI----EGADSF-SLNAHKWFF--TTLDCCCLWVK--NPNALIKALSTN 324 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~----~~~~~~~~~----~~aDsi-~~~~hK~l~--~p~~~g~~~~~--~~~~~~~~~~~~ 324 (486)
+||+++++|++|+.+..... .+......+ .....+ ..+++|.++ ....+|++++. ++..........
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 347 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIA 347 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999977543211 111111111 122334 448899984 23457887763 443332221110
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc------------hHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG------------VANLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g------------~~g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
..+. + ...+..+++...+. .+...++.++..++++++.+.|+++|+
T Consensus 348 ~~~~-------------------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g 405 (500)
T 3tcm_A 348 SVNL-------------------C---SNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEG 405 (500)
T ss_dssp HTTC-------------------C---CCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hccc-------------------C---CCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000 0 11222222222221 134566677788899999999999999
Q ss_pred eEEecCCCeeEEEE-EeecCCCCCCCCCCccchHH-------HHHH-HHHHHHhcCcEEEeeeeE---CCEeEEEEEecC
Q 038818 393 FEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANE-------LNRK-LLESINASGQLYVSHGMV---AGIYFIRFAVGA 460 (486)
Q Consensus 393 ~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~-------~~~~-l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~ 460 (486)
+++. ++..+++.| ++..+ ....+. .... +.+.+.+.|+.+.++..+ .+..++|++++
T Consensus 406 ~~~~-~~~g~~~~~~~~~lp---------~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~- 474 (500)
T 3tcm_A 406 ITCN-EAEGAMYVFPQICLP---------QKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL- 474 (500)
T ss_dssp EECC-CCCBTTEECCEECCC---------HHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-
T ss_pred cEEe-cCCeEEEEeeeecCc---------hhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-
Confidence 9876 555666655 23221 000000 0112 234455678765544332 34668999985
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+++++|+++++.|.++.+++.+
T Consensus 475 --~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 475 --PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp --SCTTTHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999887764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=214.03 Aligned_cols=333 Identities=12% Similarity=0.068 Sum_probs=220.6
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
.+.+.+...+......|...+...++++.+.+++.+.+|.+... . .+++|+|||+|+..++.+...
T Consensus 42 ~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-----~~~v~~t~g~~~al~~~~~~~~~-------- 108 (411)
T 2o0r_A 42 KMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDP-----ETEVLVTVGATEAIAAAVLGLVE-------- 108 (411)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT-----TTSEEEEEHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-----CceEEEeCCHHHHHHHHHHHhcC--------
Confidence 34455555443323345555556899999999999999865321 2 589999999999888776632
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..+|.++..+++..|. +++.+|++++ .++.+|+++|++++++. +.+|+++.++|++|.+
T Consensus 109 ---~gd~Vl~~~~~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~~nptG~~ 176 (411)
T 2o0r_A 109 ---PGSEVLLIEPFYDSYSPVVAMAGA---HRVTVPLVPDGRGFALDADALRRAVTPR------TRALIINSPHNPTGAV 176 (411)
T ss_dssp ---TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCHHHHHHHCCTT------EEEEEEESSCTTTCCC
T ss_pred ---CCCEEEEeCCCcHhHHHHHHHcCC---EEEEeeccccccCCCCCHHHHHHhhccC------ceEEEEeCCCCCCCCC
Confidence 567788898999999999999999 9999998752 23679999999988642 4577788999999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
-| +++|+++|++||+++++|++|+++.......... +.+....|.++.++||+++.| ..+|+++++ ++... .
T Consensus 177 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~-~ 254 (411)
T 2o0r_A 177 LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP-AELIA-G 254 (411)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC-HHHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC-HHHHH-H
Confidence 66 5999999999999999999998754321111111 111236789999999998733 348888875 33322 2
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
+.....+.. .. .......++..++.. +.++++++.++..++++++.+.|++. ++++..+..
T Consensus 255 l~~~~~~~~----------------~~-~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 315 (411)
T 2o0r_A 255 VRAAKQYLS----------------YV-GGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYG 315 (411)
T ss_dssp HHHHHHHHT----------------SC-CCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCB
T ss_pred HHHHHhhcc----------------CC-CChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCe
Confidence 211000100 00 001112233333432 36678888899999999999999887 788764433
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeE-C------------CEeEEEEEecCCCCcHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMV-A------------GIYFIRFAVGATLTEDR 466 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~-~------------~~~~lR~~~~~~~tt~~ 466 (486)
...+.+.+.... .. + ..++.+.+. +.|+.+..+..+ . +..++|+++. ++++
T Consensus 316 g~~~~~~~~~~~--------~~--~--~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~---~~~e 380 (411)
T 2o0r_A 316 TYFLCADPRPLG--------YD--D--STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC---KRDD 380 (411)
T ss_dssp SSEEEEECGGGT--------CC--C--HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC---SCHH
T ss_pred eEEEEEecCCCC--------CC--C--HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec---CCHH
Confidence 335666664310 00 1 235566665 568754443222 1 3468999984 2678
Q ss_pred HHHHHHHHHHHHHHHH
Q 038818 467 HVIAAWKVVQEKLDGI 482 (486)
Q Consensus 467 did~~i~~l~~~~~~l 482 (486)
+|+++++.|++++++.
T Consensus 381 ~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 381 TLDEAIRRLSVLAERP 396 (411)
T ss_dssp HHHHHHHHHGGGGC--
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998876543
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=210.63 Aligned_cols=322 Identities=13% Similarity=0.040 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.++..++.+++++++|.+ ..+++++||+|+..++.+.+.. +++.|+++..+|.++..+++.
T Consensus 41 ~~l~~~l~~~la~~~g~~---------~~i~~~~gt~al~~~~~~~~~~----------~gd~Vl~~~~~~~~~~~~~~~ 101 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVP---------YCVPTTSGSTALMLALEALGIG----------EGDEVIVPSLTWIATATAVLN 101 (418)
T ss_dssp CCHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---------cEEEeCCHHHHHHHHHHHcCCC----------CcCEEEECCCccHhHHHHHHH
Confidence 445566778889999876 2577888899998887765211 567788999999999999999
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.|+ +++.+|+++ +++.+|+++|++++++. +.+|+++ +++|.+.|+++|.++|++||+++|+|++|+.
T Consensus 102 ~g~---~~~~~~~~~-~~~~~d~~~l~~~i~~~------~~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~ 168 (418)
T 2c81_A 102 VNA---LPVFVDVEA-DTYCIDPQLIKSAITDK------TKAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCAQSH 168 (418)
T ss_dssp TTC---EEEEECBCT-TTCSBCHHHHGGGCCTT------EEEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECTTCT
T ss_pred cCC---EEEEEecCC-CCCCcCHHHHHHhhCCC------CeEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECcccc
Confidence 999 999999975 35799999999988643 3355543 4789999999999999999999999999987
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC-CCCCccCCCC-----cc
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS-DSKQVVDYKD-----WQ 345 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~-----~~ 345 (486)
+..+.. +. +..+..+++.++++||+++.+ .+|+++.+++........... +...... .......+.+ ..
T Consensus 169 ~~~~~~--~~-~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (418)
T 2c81_A 169 GSVWNN--QR-AGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRA-DSRVYCDDSSELMHGDMQLVKKGDI 243 (418)
T ss_dssp TCEETT--EE-TTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHB-TTEEECSCGGGCCTTCBSEEECCSS
T ss_pred cCccCC--Ee-cccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHH-hCccccccccccccchhhccccccc
Confidence 653211 11 111223566677779999874 667777655554322111000 0000000 0000000100 00
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe------eEEEEEeecCCCCCCCCC
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF------AVVCFRVLPSASGLGDGK 419 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~------~~v~f~~~~~~~~~~~~~ 419 (486)
+....+...+.....+ ...+++++..++..++++++.+.|+++|++++..++.. .++++.+.....
T Consensus 244 ~g~~~~~~~~~aa~~~--~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 315 (418)
T 2c81_A 244 QGSNYCLSEFQSAILL--DQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKF------ 315 (418)
T ss_dssp CCCBCCCCHHHHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGT------
T ss_pred cCcCCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccc------
Confidence 1111122223222222 23456778888889999999999999989998744432 245566642000
Q ss_pred CccchHHHHHHHHHHHHhc-CcE---EEeee-eE------C--------------------C---------EeEEEEEec
Q 038818 420 ANEGANELNRKLLESINAS-GQL---YVSHG-MV------A--------------------G---------IYFIRFAVG 459 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~~-g~~---~~~~~-~~------~--------------------~---------~~~lR~~~~ 459 (486)
. +....++.+.|.++ |+. .-.+. .. . + ...+|+++
T Consensus 316 --~--~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~- 390 (418)
T 2c81_A 316 --G--GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHH- 390 (418)
T ss_dssp --T--TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEG-
T ss_pred --c--ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecC-
Confidence 0 00124567777777 875 32211 00 0 1 25899998
Q ss_pred CCCC-cHHHHHHHHHHHHHHHHHHh
Q 038818 460 ATLT-EDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 460 ~~~t-t~~did~~i~~l~~~~~~l~ 483 (486)
++.+ |++||++++++|+++++++.
T Consensus 391 ~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 391 AILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred CccCCCHHHHHHHHHHHHHHHHhhc
Confidence 5688 89999999999999887653
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=211.46 Aligned_cols=311 Identities=11% Similarity=0.080 Sum_probs=207.2
Q ss_pred ccccccChhhHHHHHHHHHHHHHHc-CCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEML-KLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ 180 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~-g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~ 180 (486)
...|...+...++++.+ ++++ +.+.+ .+++|+|||+|+..++.+... +++.|+++..
T Consensus 56 ~~~y~~~~g~~~l~~~l----a~~~~~~~~~-------~v~~~~g~~~a~~~~~~~l~~-----------~gd~Vl~~~~ 113 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSV----SQLYTGVKPE-------QILQTNGATGANLLVLYSLIE-----------PGDHVISLYP 113 (375)
T ss_dssp CCSSCCTTCCHHHHHHH----HTTSSSCCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTCEEEEEES
T ss_pred CcCCCCCCChHHHHHHH----HHHhccCChh-------hEEEcCChHHHHHHHHHHhcC-----------CCCEEEEeCC
Confidence 34454455556666654 4444 34443 689999999999888876643 5677888999
Q ss_pred CchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHH
Q 038818 181 THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAK 257 (486)
Q Consensus 181 ~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~ 257 (486)
+|.++..+++..|. +++.+|+++.+.+.+|+++|++++++. +.+|+++.++|++|.+.| +++|+++|+
T Consensus 114 ~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~la~ 184 (375)
T 3op7_A 114 TYQQLYDIPKSLGA---EVDLWQIEEENGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYLEELVEIAS 184 (375)
T ss_dssp SCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCC---EEEEEeccccCCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999 999999875445789999999998743 346788899999999999 999999999
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
+||+++++|++|+.+... ...... .....+.+..+++|+++ ....+|+++. +++... .+.....+.
T Consensus 185 ~~~~~li~De~~~~~~~~--~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~-~~~~~~~~~-------- 251 (375)
T 3op7_A 185 EVGAYILSDEVYRSFSEL--DVPSII-EVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTD-ILRDYRDYT-------- 251 (375)
T ss_dssp TTTCEEEEECCSCCCSSS--CCCCHH-HHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHH-HHTTTGGGT--------
T ss_pred HcCCEEEEEccccccccc--CCCchh-hhcCCEEEEeEChhhcCCcccceEEEEe-CHHHHH-HHHHHHhhh--------
Confidence 999999999999775432 111111 11234467788999998 3455788877 444433 232111110
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCC
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASG 414 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~ 414 (486)
+.....+..+++...+ ..+.+++..++..++++++.+.|++.+++++..+.....+.+.+....
T Consensus 252 ------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (375)
T 3op7_A 252 ------------MICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-- 317 (375)
T ss_dssp ------------TSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--
T ss_pred ------------ccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--
Confidence 0011223333333322 234556667777889999999999888898765443333444443211
Q ss_pred CCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 415 LGDGKANEGANELNRKLLESI-NASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
+ ..++.+.+ .+.|+.+.++..+....++|++++. ++++|+++++.|.++++++.++
T Consensus 318 ----------~--~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~---~~~~i~~~l~~l~~~l~~~~~~ 374 (375)
T 3op7_A 318 ----------P--MEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFAC---EQETLIKGLEKLSQFLRRFDKE 374 (375)
T ss_dssp ----------C--HHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCS---CHHHHHHHHHHHHHHHGGGC--
T ss_pred ----------C--HHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHHhhc
Confidence 0 23455555 4668765444444446789999853 3479999999999998876543
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=200.35 Aligned_cols=287 Identities=12% Similarity=0.088 Sum_probs=203.6
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++++++++|.+.+ ..++|+|||+++..++.+... ++..|+++..+|.++...++..|.
T Consensus 70 ~~lr~~la~~~~~~~~-------~v~~~~g~t~a~~~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~g~- 130 (363)
T 3ffh_A 70 SSLRKEVADFYQLEEE-------ELIFTAGVDELIELLTRVLLD-----------TTTNTVMATPTFVQYRQNALIEGA- 130 (363)
T ss_dssp HHHHHHHHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCS-----------TTCEEEEEESSCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCCChh-------hEEEeCCHHHHHHHHHHHHcc-----------CCCEEEEcCCChHHHHHHHHHcCC-
Confidence 4566778888887665 789999999999887776532 566788888999999999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchh
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSA 273 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~ 273 (486)
+++.+|.++ ++.+|+++|++++++. +.+|+++.++|++|.+.|+++|.++|+.+ |+++|+|++|+.+.
T Consensus 131 --~~~~v~~~~--~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~ 200 (363)
T 3ffh_A 131 --EVREIPLLQ--DGEHDLEGMLNAIDEK------TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYV 200 (363)
T ss_dssp --EEEEEECCT--TSCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGC
T ss_pred --EEEEecCCC--CCCcCHHHHHHhcccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhc
Confidence 999999986 5799999999998643 45788899999999999999999999888 99999999998654
Q ss_pred ccCccchhhhc--CCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 274 CICPEFRHFID--GIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 274 ~~~~~~~~~~~--~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
. ........ ....-+.+..+++|+++ ....+|+++++ ++...........|
T Consensus 201 ~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~----------------------- 254 (363)
T 3ffh_A 201 T--PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD-KEIIRQLNIVRPPF----------------------- 254 (363)
T ss_dssp S--SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HHHHHHHHHTCCSC-----------------------
T ss_pred C--ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC-HHHHHHHHHhCCCC-----------------------
Confidence 3 11111111 11123356778899997 44456888874 43333221111000
Q ss_pred CCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 351 RFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 351 ~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
....+..+++...+ ..+++++..++..++++++.+.|++++++++. ++..+.+.+.+... ..
T Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~----------------~~ 317 (363)
T 3ffh_A 255 NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PANGNFVLIDLGIE----------------AG 317 (363)
T ss_dssp CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCCSSEEEEECSSC----------------HH
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCCCeEEEEECCCC----------------HH
Confidence 12333334444333 23667888889999999999999987789876 45556666665421 24
Q ss_pred HHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
++.+.|.++|+.+..+..+...+++|+++. +++|+++++++|+++
T Consensus 318 ~~~~~l~~~gi~v~~g~~~~~~~~iRis~~----~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 318 TIFSYLEKNGYITRSGAALGFPTAVRITIG----KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHTTEECEETTTTTCTTEEEEECC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEeCccCCCCCeEEEECC----CHHHHHHHHHHHHHh
Confidence 567777777875443332323568999974 778999999999875
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=214.25 Aligned_cols=322 Identities=12% Similarity=0.054 Sum_probs=206.4
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+... .|..++...++| +.+++++|.+ .+++++|||+|+..++.++.-.
T Consensus 17 ~~~~~a~~~~~~~~--~~~~~~~~~~l~----~~la~~~~~~---------~~i~~~sgt~al~~~l~~l~~~------- 74 (373)
T 3frk_A 17 YEIKFKFEEIYKRN--WFILGDEDKKFE----QEFADYCNVN---------YCIGCGNGLDALHLILKGYDIG------- 74 (373)
T ss_dssp HHHHHHHHHHHHHT--CCSSSHHHHHHH----HHHHHHHTSS---------EEEEESCHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHCC--CccCCchHHHHH----HHHHHHhCCC---------eEEEeCCHHHHHHHHHHHcCCC-------
Confidence 33444444444322 244445544554 5567777764 4799999999998887765211
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|++++++. +.+|+ +++++|.+.
T Consensus 75 ---~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~~ 138 (373)
T 3frk_A 75 ---FGDEVIVPSNTFIATALAVSYTGA---KPIFVEPDIR-TYNIDPSLIESAITEK------TKAII---AVHLYGQPA 138 (373)
T ss_dssp ---TTCEEEEETTSCTHHHHHHHHHSC---EEEEECEETT-TTEECGGGTGGGCCTT------EEEEE---EECCTTCCC
T ss_pred ---CcCEEEECCCCcHHHHHHHHHcCC---EEEEEecccc-ccCcCHHHHHHhcCCC------CeEEE---EECCCcCcc
Confidence 567899999999999999999999 9999999853 5799999999988653 33455 567899999
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeec--cccccCCCCcceEEEeeCchHHHHHhcCCc
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLN--AHKWFFTTLDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~--~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
|+++|.++|++||+++|+|+||+.+...... .. + ...|.++++ +||+++++..+|+++.+++...........
T Consensus 139 ~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~~--~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~ 213 (373)
T 3frk_A 139 DMDEIKRIAKKYNLKLIEDAAQAHGSLYKGM--KV--G-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSN 213 (373)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTCTTCEETTE--ET--T-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHB
T ss_pred cHHHHHHHHHHcCCEEEEECCcccCCEECCE--ec--c-ccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999765442211 11 1 136777777 779997744567777766544322111000
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC---ee
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN---FA 402 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---~~ 402 (486)
+-... .+. ....+..+....+..++.....+++++..++..++++++.+.|++++ +++...+. .+
T Consensus 214 -~g~~~--------~~~--~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 281 (373)
T 3frk_A 214 -YGSEK--------KYH--HIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHV 281 (373)
T ss_dssp -TTCSB--------TTB--CCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECC
T ss_pred -cCccc--------CCc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCcee
Confidence 00000 000 00111122333444444444456788889999999999999999986 76643322 12
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee--eEC---------------------CEeEEEEEec
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG--MVA---------------------GIYFIRFAVG 459 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~~---------------------~~~~lR~~~~ 459 (486)
.+.|.+.... ...+.+.|.++|+..-... ... ....+|+++
T Consensus 282 ~~~~~~~~~~---------------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~- 345 (373)
T 3frk_A 282 WYTFVIRSEK---------------RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPI- 345 (373)
T ss_dssp CSSEEEEESS---------------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECC-
T ss_pred eEEEEEEeCC---------------HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccC-
Confidence 2233332211 3456777777787422111 000 126899998
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~ 480 (486)
++.+|++|||+++++|++...
T Consensus 346 ~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 346 WYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp CTTCCHHHHHHHHHHHHTCC-
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 678899999999999987654
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=203.54 Aligned_cols=291 Identities=13% Similarity=0.086 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+++++++|.+. .+++++||++|..++.+... +++.|+++...|.+...+++..
T Consensus 104 ~~~~~l~~~la~~~g~~~---------~i~~~sGt~a~~~~l~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~ 163 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFDE---------CLLSQSGWNANVGLLQTICQ-----------PNTNVYIDFFAHMSLWEGARYA 163 (409)
T ss_dssp TTSCHHHHHHHHHHTCSE---------EEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCe---------EEEecchHHHHHHHHHHhcC-----------CCCEEEECCCcCHHHHHHHHHc
Confidence 334456677888888753 46667778999888776543 6778889999999999999999
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|. +++.++. +|+++|++++++.. +.+|+++.+++++|.+.|+++|+++|++||+++++|++|+++
T Consensus 164 g~---~~~~~~~-------~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g 228 (409)
T 3kki_A 164 NA---QAHPFMH-------NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLG 228 (409)
T ss_dssp TC---EEEEECT-------TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CC---eEEEecC-------CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccc
Confidence 98 7777653 58999999998742 247888999999999999999999999999999999999765
Q ss_pred hccCccchh--hhcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 273 ACICPEFRH--FIDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 273 ~~~~~~~~~--~~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
.+.. .... ...++ ..+|.++.+++|+++.+ .|+++.+++ ..........++... .+
T Consensus 229 ~~g~-~g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~~-~~~~~~~~~~~~~~~-----------------~~ 287 (409)
T 3kki_A 229 THGP-NGAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWCNNE-VNRCVPFISYPAIFS-----------------ST 287 (409)
T ss_dssp TSSG-GGCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEESSS-GGGTHHHHCHHHHHS-----------------BC
T ss_pred ccCC-CCCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEECHH-HHHHHHHhCcCcccc-----------------CC
Confidence 4311 1111 11122 36789999999999876 466666544 211111111112111 01
Q ss_pred CCCCch---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 350 RRFRAL---KLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 350 r~~~~l---~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
...+ ++..++..+ +..+++.++..++++++.+.|+++ ++++. +..+++.+.+.. ..
T Consensus 288 --~~~~~~aa~~aal~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~--------------~~ 346 (409)
T 3kki_A 288 --LLPYEAAGLETTLEII--ESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGD--------------ER 346 (409)
T ss_dssp --CCHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEES--------------HH
T ss_pred --CcHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCC--------------HH
Confidence 1222 223333332 122567778889999999999987 67665 355677777653 22
Q ss_pred HHHHHHHHHHhcCcEEEeee---eECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHG---MVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~---~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
...++.+.|.++|+++.... ...+..++|+++. ..+++++|+++++.|+++++.
T Consensus 347 ~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 347 NTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHhc
Confidence 34567778888887532211 1235689999984 577888999999999998865
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=199.38 Aligned_cols=292 Identities=13% Similarity=0.069 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
..++++++++++|.+.+ ..++|+|||+|+..++.+... +++.|+++..+|.++...++..|.
T Consensus 53 ~~~l~~~la~~~~~~~~-------~i~~~~g~~~a~~~~~~~l~~-----------~gd~vl~~~~~~~~~~~~~~~~g~ 114 (354)
T 3ly1_A 53 ILMLGNKLAAHHQVEAP-------SILLTAGSSEGIRAAIEAYAS-----------LEAQLVIPELTYGDGEHFAKIAGM 114 (354)
T ss_dssp HHHHHHHHHHHTTSCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTCEEEEESSSCTHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhCCChH-------HEEEeCChHHHHHHHHHHHhC-----------CCCeEEECCCCchHHHHHHHHcCC
Confidence 34677889999998665 789999999999887776532 566788899999999999999999
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH--hCceEEeeccccch
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR--YSIWVHVDAAYAGS 272 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~--~g~~lhvD~a~g~~ 272 (486)
+++.+|.++ ++.+|+++|++++++. ..+.+|+++.++|++|.+-|++++.++++. +|+++++|++|+.+
T Consensus 115 ---~~~~~~~~~--~~~~d~~~l~~~l~~~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~ 185 (354)
T 3ly1_A 115 ---KVTKVKMLD--NWAFDIEGLKAAVAAY----SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEF 185 (354)
T ss_dssp ---EEEEECCCT--TSCCCHHHHHHHHHTC----SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGG
T ss_pred ---EEEEecCCC--CCCCCHHHHHHHhccC----CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHh
Confidence 999999985 5799999999999731 124578888999999999999988888887 99999999999865
Q ss_pred hccCc--cchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 273 ACICP--EFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 273 ~~~~~--~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
..... ............+.++.++||+++ .+..+|+++.+ +............ .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~---------------------~- 242 (354)
T 3ly1_A 186 VNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTVIALMGRYVAG---------------------E- 242 (354)
T ss_dssp CCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHHHHHHGGGTTC---------------------S-
T ss_pred ccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHHHHHHHHhcCC---------------------C-
Confidence 43211 111111111134577889999997 55567888774 3333222111100 0
Q ss_pred CCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 350 RRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
....+..+++...+. .+.++++.++..++++++.+.|+++ ++++. ++..+.+.+.+... .
T Consensus 243 -~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~~----------------~ 303 (354)
T 3ly1_A 243 -KINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLVVP----------------L 303 (354)
T ss_dssp -CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECSSC----------------H
T ss_pred -CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCCC----------------H
Confidence 113334444444432 2567888888999999999999887 67765 44555666665421 2
Q ss_pred HHHHHHHHhcCcEEEeeeeE-CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMV-AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~-~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.++.+.|.++|+. +. ..+ ....++|+++. +++|++++++.|++++++
T Consensus 304 ~~~~~~l~~~gi~-v~-g~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 304 KDYQTHMADAGVL-IG-RAFPPADNWCRISLG----TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp HHHHHHHHHTTEE-CC-CCCTTCTTEEEEECC----CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEE-Ee-ecCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHHh
Confidence 4566777777874 43 322 24678999974 678999999999998754
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=209.31 Aligned_cols=318 Identities=12% Similarity=0.056 Sum_probs=209.9
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+.. ...|...+...+++ +.+++++|.+.+ .+++|+|||+|+..++.++..
T Consensus 41 ~~v~~a~~~~~~~-~~~y~~~~~~~~l~----~~la~~~~~~~~-------~v~~~~g~~~a~~~~~~~~~~-------- 100 (381)
T 1v2d_A 41 PFLLEAVRRALGR-QDQYAPPAGLPALR----EALAEEFAVEPE-------SVVVTSGATEALYVLLQSLVG-------- 100 (381)
T ss_dssp HHHHHHHHHHTTT-SCSCCCTTCCHHHH----HHHHHHHTSCGG-------GEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHH-hcCCCCCCCCHHHH----HHHHHhcCCChh-------hEEEcCChHHHHHHHHHHhCC--------
Confidence 3445555555543 23444433444444 556666887654 689999999999888877642
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC--CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT--KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d--~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..+|.++..+++..|+ +++.+|++ +. ++.+|+++|++++++. +.+|+++.++|++|.
T Consensus 101 ---~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~ 167 (381)
T 1v2d_A 101 ---PGDEVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPE-GFRLDLSALEKALTPR------TRALLLNTPMNPTGL 167 (381)
T ss_dssp ---TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETT-EEECCHHHHHTTCCTT------EEEEEEESSCTTTCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCCCCc-cCCcCHHHHHHhcCcC------CEEEEECCCCCCCCC
Confidence 567788888999999999999999 99999987 32 4789999999988532 457888899999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
+-| +++|+++|++||+++|+|++|+++.. ..............|.++.++||+++.| ..+|+++++++ ... .+
T Consensus 168 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~~-~~ 244 (381)
T 1v2d_A 168 VFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKE-FMP-RL 244 (381)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTT-THH-HH
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHH-HHH-HH
Confidence 865 89999999999999999999987543 1111111100236889999999998744 34899888654 222 11
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHH---HHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKL---WLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~---~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
.....+.. . ....+.. ..++.... .++++++.++..++++++.+.|++. ++++..
T Consensus 245 ~~~~~~~~------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 303 (381)
T 1v2d_A 245 AGMRQWTS------------------F--SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYV 303 (381)
T ss_dssp HHHHHHHT------------------S--SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC
T ss_pred HHHHhhcc------------------c--CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC
Confidence 10000000 0 0112222 22333211 4667888899999999999999885 888775
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC----CEeEEEEEecCCCCcHHHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA----GIYFIRFAVGATLTEDRHVIAAWK 473 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----~~~~lR~~~~~~~tt~~did~~i~ 473 (486)
+.....+.+.+.. . + +.+.+.+.|+.+..+..+. +..++|+++.. ++++|+++++
T Consensus 304 ~~~~~~~~~~~~~----------~---~-----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~---~~~~i~~~~~ 362 (381)
T 1v2d_A 304 PEGTYFLMAELPG----------W---D-----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK---TEEELHLALE 362 (381)
T ss_dssp CSBSSEEEEECTT----------C---C-----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS---CHHHHHHHHH
T ss_pred CCcceEEEEecCh----------H---h-----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC---CHHHHHHHHH
Confidence 4433445555432 1 1 3445556787544333222 35689999853 7889999999
Q ss_pred HHHHHHHHHh
Q 038818 474 VVQEKLDGIL 483 (486)
Q Consensus 474 ~l~~~~~~l~ 483 (486)
.|++++++..
T Consensus 363 ~l~~~l~~~r 372 (381)
T 1v2d_A 363 RLGRVVNSPR 372 (381)
T ss_dssp HHHHHC----
T ss_pred HHHHHHhhcc
Confidence 9999876654
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=209.89 Aligned_cols=321 Identities=13% Similarity=0.074 Sum_probs=210.9
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN 169 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 169 (486)
+.+.+...+... .|...+...+ +++.+++++|.+ .+++++|||+|+..++.+++..
T Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~----l~~~la~~~~~~---------~~~~~~~gt~a~~~~~~~~~~~--------- 76 (374)
T 3uwc_A 21 YLNDLREFIKTA--DFTLGAELEK----FEKRFAALHNAP---------HAIGVGTGTDALAMSFKMLNIG--------- 76 (374)
T ss_dssp HHHHHHHHHHHT--CCSSCHHHHH----HHHHHHHHTTCS---------EEEEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHcC--CcccChhHHH----HHHHHHHHhCCC---------cEEEeCCHHHHHHHHHHHcCCC---------
Confidence 555555444332 2334444444 445677788765 4689999999998777765211
Q ss_pred CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCc
Q 038818 170 ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPL 249 (486)
Q Consensus 170 ~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl 249 (486)
+++.|+++..+|.++..+++..|+ +++.+|++. ++.+|+++|++++++. +.+|+ +++++|.+.|+
T Consensus 77 -~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~~~~~------~~~v~---~~n~~G~~~~~ 141 (374)
T 3uwc_A 77 -AGDEVITCANTFIASVGAIVQAGA---TPVLVDSEN--GYVIDPEKIEAAITDK------TKAIM---PVHYTGNIADM 141 (374)
T ss_dssp -TTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCT--TSSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCH
T ss_pred -CCCEEEECCCccHHHHHHHHHcCC---EEEEEecCC--CCCcCHHHHHHhCCCC------ceEEE---EeCCcCCcCCH
Confidence 567888999999999999999999 999999973 6799999999988653 23444 77899999999
Q ss_pred hHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccc--cccCCCCcceEEEeeCchHHHHHhcCCccc
Q 038818 250 GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAH--KWFFTTLDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 250 ~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~h--K~l~~p~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
++|+++|++||+++|+|++|+.+..+...... ...|.+++++| |+++++..+|+++.+++.............
T Consensus 142 ~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~-----~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~ 216 (374)
T 3uwc_A 142 PALAKIAKKHNLHIVEDACQTILGRINDKFVG-----SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHG 216 (374)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEETT-----SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHcCCEEEEeCCCccCceeCCeecc-----ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcC
Confidence 99999999999999999999865443211111 13699999977 999874447777777665433221111000
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEecCCCe---eE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR-FEIVAPRNF---AV 403 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~~~~~~---~~ 403 (486)
. .. .+. ....+.......+..++.....++++++.++..++++++.+.|+++++ +++...+.. ..
T Consensus 217 ~-~~--------~~~--~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 285 (374)
T 3uwc_A 217 L-IN--------RDV--CVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVF 285 (374)
T ss_dssp E-EE--------TTE--ESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCC
T ss_pred c-cc--------cCc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceee
Confidence 0 00 000 001111222334444444445577888999999999999999999887 887543321 11
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee--eE------C---------------CEeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG--MV------A---------------GIYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~------~---------------~~~~lR~~~~~ 460 (486)
+.|.+.... ...+.+.|.++|+.+.... .. . ....+|+++ +
T Consensus 286 ~~~~~~~~~---------------~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~ 349 (374)
T 3uwc_A 286 HIYVLRVKY---------------RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPA-H 349 (374)
T ss_dssp SSEEEEETT---------------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECC-C
T ss_pred EEEEEEcCC---------------HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccC-C
Confidence 223332211 2456777777787422211 00 0 126899998 5
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~ 481 (486)
+.+|++||+++++.|++++++
T Consensus 350 ~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 350 PYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 788999999999999998865
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=206.48 Aligned_cols=341 Identities=12% Similarity=0.064 Sum_probs=219.0
Q ss_pred HHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHH------cCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 90 LGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEM------LKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 90 ~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l------~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
+.+.+...+... ...|.......++++.+.+++.+. .|++.. ...+++|+||++|+..++.+...
T Consensus 55 v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-----~~~v~~~~g~~~al~~~~~~l~~--- 126 (416)
T 1bw0_A 55 QIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-----KDNVVLCSGGSHGILMAITAICD--- 126 (416)
T ss_dssp HHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-----GGGEEEESHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-----cceEEEeCChHHHHHHHHHHhCC---
Confidence 444444444221 234544445678888888888843 232211 12689999999999877776532
Q ss_pred HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc
Q 038818 163 NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA 242 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~ 242 (486)
+++.|+++..+|.++..+++..|+ +++.+|+++++.+.+|+++|++++++. +.+|+++.++|+
T Consensus 127 --------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~np 189 (416)
T 1bw0_A 127 --------AGDYALVPQPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNP 189 (416)
T ss_dssp --------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTT
T ss_pred --------CCCEEEEcCCCcHhHHHHHHHcCc---EEEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCCCC
Confidence 566788888999999999999999 999999875334689999999988643 346778889999
Q ss_pred ccccCC---chHHHHHHHHhCceEEeeccccchhccCc----cchhhhcCCCC--CCceeeccccccCCC-CcceEEEee
Q 038818 243 ITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICP----EFRHFIDGIEG--ADSFSLNAHKWFFTT-LDCCCLWVK 312 (486)
Q Consensus 243 ~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~----~~~~~~~~~~~--aDsi~~~~hK~l~~p-~~~g~~~~~ 312 (486)
+|.+.| +++|+++|++||+++++|++|+.+..... .+.. +..+.. -+.++.+++|+++.| ..+|+++++
T Consensus 190 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~ 268 (416)
T 1bw0_A 190 CGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS-VADFETTVPRVILGGTAKNLVVPGWRLGWLLYV 268 (416)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC-TTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC-HHHccCCCcEEEEecchhhCCCCCceEEEEEee
Confidence 999988 99999999999999999999987432111 1111 122211 134567899998755 458899887
Q ss_pred Cc-hHHHHHhcCCcccccCccCCCCCccCCCCccccCCC-CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 313 NP-NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR-RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 313 ~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr-~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
++ ............+... ..+- .....++..++.....++++++.++..++++++.+.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (416)
T 1bw0_A 269 DPHGNGPSFLEGLKRVGML----------------VCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC 332 (416)
T ss_dssp CTTCSCHHHHHHHHHHHHH----------------HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CchhhHHHHHHHHHHHhcc----------------ccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 75 2211110000000000 0000 0111222333433346778889999999999999999998
Q ss_pred CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 038818 391 NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did 469 (486)
|++++..+.....+.+.+...... + .. + ..++.+.+. ++|+.+..+..+...+++|+++. +++++|+
T Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~~~--~---~~--~--~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~---~~~e~l~ 400 (416)
T 1bw0_A 333 IGLAPTMPRGAMYLMSRIDLEKYR--D---IK--T--DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT---RPVEVYR 400 (416)
T ss_dssp TTEEECCCCBTTEEEEEECGGGBS--S---CC--S--HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHH
T ss_pred CCCcccCCCeeEEEEEeCCHHHcC--C---CC--C--HHHHHHHHHHHCCEEEecccccCCCCeEEEEec---CCHHHHH
Confidence 899876444445555665421000 0 00 1 234566653 67875544433333568999983 5788999
Q ss_pred HHHHHHHHHHHHHhh
Q 038818 470 AAWKVVQEKLDGILA 484 (486)
Q Consensus 470 ~~i~~l~~~~~~l~~ 484 (486)
++++.|.+++++..+
T Consensus 401 ~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 401 EAVERIKAFCQRHAA 415 (416)
T ss_dssp HHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998877543
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=212.24 Aligned_cols=341 Identities=11% Similarity=0.063 Sum_probs=220.8
Q ss_pred HHHHHHHhhcCC---CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 89 FLGEMLSSGFNV---VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 89 ~~~~~l~~~~n~---~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
.+.+.+...++. ....|.......++++.+.+++.+.+|.+.. .. ..++|+||++|+..++.+...
T Consensus 54 ~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-----~~~~v~~~~g~~~a~~~~~~~~~~----- 123 (429)
T 1yiz_A 54 YALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN-----PMTEVLVTVGAYEALYATIQGHVD----- 123 (429)
T ss_dssp HHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC-----TTTSEEEESHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----CcCCEEEecChHHHHHHHHHHhcC-----
Confidence 445555555543 2334544445688999999999998886432 12 589999999999888777643
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCC--------CcccCHHHHHHHHHHHHHCCCccEEEEe
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSS--------SFTLTPESLQAAIDLDIQAGLIPLFLCA 236 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~--------~~~~d~~~L~~~l~~~~~~g~~p~~vv~ 236 (486)
++..|+++..+|.++..+++..|. +++.+|.+.++ ++.+|+++|++++++. +.+|++
T Consensus 124 ------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~ 188 (429)
T 1yiz_A 124 ------EGDEVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIII 188 (429)
T ss_dssp ------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT------EEEEEE
T ss_pred ------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCcccccccccccCcccCHHHHHHHhccC------ceEEEE
Confidence 556788888999999999999999 99999987632 4689999999988532 457778
Q ss_pred ecCCccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEE
Q 038818 237 TVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLW 310 (486)
Q Consensus 237 ~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~ 310 (486)
+.++|++|.+-| +++|+++|++||+++++|++|+++.......... +.+..+.|.+..++||+++.| ..+|+++
T Consensus 189 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 268 (429)
T 1yiz_A 189 NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAY 268 (429)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEE
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEE
Confidence 899999999975 9999999999999999999998654321111111 111235788899999998733 3489888
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh----c--hHHHHHHHHHHHHHHHHHH
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF----G--VANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~----g--~~g~~~~~~~~~~~a~~l~ 384 (486)
++++ ... .+.....+. +.. .-.....++..++... + .+.+++..++..++++++.
T Consensus 269 ~~~~-~~~-~l~~~~~~~----------------~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 329 (429)
T 1yiz_A 269 GPEA-LLK-NLQMVHQNC----------------VYT-CATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMA 329 (429)
T ss_dssp SCHH-HHH-HHHHHHHTT----------------TCC-CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred eCHH-HHH-HHHHHHhhc----------------ccC-CChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHH
Confidence 8643 322 221100000 000 0001112233334431 3 4567888888899999999
Q ss_pred HHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC-------CEeEEEE
Q 038818 385 ELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA-------GIYFIRF 456 (486)
Q Consensus 385 ~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~-------~~~~lR~ 456 (486)
+.|+++ ++++..+.....+.+.+.....+..-..... .....++.+.+. ++|+.+..+..+. +..++|+
T Consensus 330 ~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRi 406 (429)
T 1yiz_A 330 SFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETD--ARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRY 406 (429)
T ss_dssp HHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSS--SCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEE
T ss_pred HHHHhC-CCcccCCCcceEEEEEccccccccccccccc--CCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEE
Confidence 999887 7887654444566666653200000000000 011345666665 5687543332222 2568999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHH
Q 038818 457 AVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 457 ~~~~~~tt~~did~~i~~l~~~~ 479 (486)
++. +++++|+++++.|++++
T Consensus 407 s~~---~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 407 CFF---KKDENLQKAAEILRKWK 426 (429)
T ss_dssp ECC---SCHHHHHHHHHHHHHHS
T ss_pred Eec---CCHHHHHHHHHHHHHhc
Confidence 985 37889999999998764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=210.74 Aligned_cols=315 Identities=10% Similarity=0.040 Sum_probs=189.5
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..+...++|..+++++++++|.+.+.. +..++++|||+||..++.+... +++.|+++...|.+..
T Consensus 94 G~~~~~~lE~~a~~~~a~l~g~~~~~~----~~~v~~~sGt~An~~al~al~~-----------pGD~Vl~~~~~h~g~l 158 (490)
T 2a7v_A 94 GAEVVDEIELLCQRRALEAFDLDPAQW----GVNVQPYSGSPANLAVYTALLQ-----------PHDRIMGLDLPDGGHL 158 (490)
T ss_dssp ----CTHHHHHHHHHHHHHTTCCTTTE----EEECCCSSHHHHHHHHHHHHCC-----------SCEECCC---------
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccC----ceEEeCCchHHHHHHHHHHHcC-----------CCCEecccCccccccc
Confidence 345557899999999999999986410 0135667899999888877643 7788888887775421
Q ss_pred --------HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH
Q 038818 187 --------KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR 258 (486)
Q Consensus 187 --------~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~ 258 (486)
+.+...|... .++.+++++ +++.+|+++|++++++.. |.+|+++.. ..|...|+++|++||++
T Consensus 159 ~h~~~~~~~~i~~~g~~~-~~~~~~vd~-~~~~iD~d~le~~l~~~~-----~klIi~~~s--~~~~~~dl~~i~~ia~~ 229 (490)
T 2a7v_A 159 THGYMSDVKRISATSIFF-ESMPYKLNP-KTGLIDYNQLALTARLFR-----PRLIIAGTS--AYARLIDYARMREVCDE 229 (490)
T ss_dssp -----------------------CCBCT-TTCSBCHHHHHHHHHHHC-----CSEEEECCS--SCCSCCCHHHHHHHHHH
T ss_pred cchhhhcchhHHHcCCeE-EEEeccccc-ccCCcCHHHHHHHHhhcC-----CcEEEEcCC--CCCCcccHHHHHHHHHH
Confidence 1334555411 234445553 357999999999997542 335555433 34667899999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch-------------HHHHHhcCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN-------------ALIKALSTNP 325 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~-------------~~~~~~~~~~ 325 (486)
||+++|+|+||+.+..........+ +.+|++++++||++++|.| |+++++++. .+.+.+.
T Consensus 230 ~g~~livD~Ah~~glv~~g~~~~~~---~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~--- 302 (490)
T 2a7v_A 230 VKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRIN--- 302 (490)
T ss_dssp TTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHH---
T ss_pred cCCEEEEccccccccccCCcCCCCC---CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHH---
Confidence 9999999999976544332222112 3689999999999988875 888887641 0111110
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeE
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAV 403 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~ 403 (486)
..++. +.+++.... ..++..++...-.+.+.++.++..+++++|++.|.+. |++++.+ ...++
T Consensus 303 ~~~~~--------------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~l 367 (490)
T 2a7v_A 303 FAVFP--------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHL 367 (490)
T ss_dssp HHHTT--------------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSE
T ss_pred HHhcc--------------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeE
Confidence 00110 111121111 1233334444333466888899999999999999987 8998753 34567
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-----CCEeEEEEEe---cCCCCcHHHHHHHHHHH
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-----AGIYFIRFAV---GATLTEDRHVIAAWKVV 475 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-----~~~~~lR~~~---~~~~tt~~did~~i~~l 475 (486)
+.+.+.+... ...++.+.|.+.|+.+-..+.. .....+|+++ ++...+++|++++++.|
T Consensus 368 v~vdl~~~g~-------------~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i 434 (490)
T 2a7v_A 368 VLVDLRPKGL-------------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 434 (490)
T ss_dssp EEEECTTTTC-------------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHH
T ss_pred EEEEeCCCCC-------------CHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHH
Confidence 7776654321 0234555666678753322111 1245799965 23456889999999999
Q ss_pred HHHHH
Q 038818 476 QEKLD 480 (486)
Q Consensus 476 ~~~~~ 480 (486)
.+++.
T Consensus 435 ~~~l~ 439 (490)
T 2a7v_A 435 DEGVN 439 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=219.16 Aligned_cols=292 Identities=11% Similarity=0.009 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++++++++ +|.+. ..++|+|||+||..++.++.. +++.|+++..+|.++..++...
T Consensus 57 ~~~~~~~~~la~-~g~~~--------~v~~~~G~t~a~~~~~~a~~~-----------~gd~Vlv~~~~h~s~~~~~~~~ 116 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDYD--------GYFLVNGTTSGILSVIQSFSQ-----------KKGDILMARNVHKSVLHALDIS 116 (446)
T ss_dssp SHHHHHHHHHCS-CTTEE--------EEEESSHHHHHHHHHHHTTTT-----------SSSCEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHh-cCCCc--------eEEEeCCHHHHHHHHHHHhcC-----------CCCEEEEecCccHHHHHHHHHc
Confidence 345677889999 99863 578999999999888877643 6677889999999999999999
Q ss_pred CCCCCCeEEEec--CCCC--CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 193 GIDPKNFRAIKT--TKSS--SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 193 G~g~~~v~~v~~--d~~~--~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
|+ +++.++. +++. .+.+|+++| +.++ +.+|+++. +|++|.+.|+++|+++|++||+|+|+|+|
T Consensus 117 G~---~~~~v~~~~~~~~~~~~~~d~~~l---~~~~------~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea 183 (446)
T 2x3l_A 117 QQ---EGHFIETHQSPLTNHYNKVNLSRL---NNDG------HKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEA 183 (446)
T ss_dssp TC---CEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECT
T ss_pred CC---eEEEEeCeeccccCcCCCCCHHHH---cCCC------ceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcch
Confidence 99 9999988 5310 057898887 3322 34677777 66699999999999999999999999999
Q ss_pred ccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 269 YAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
|++...+.+. ...... .++|+++.++||+++++.++|+++++++..-...+.... .... ..
T Consensus 184 ~~~~~~f~~~-~~~~~~-~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~-~~~~----------------~~ 244 (446)
T 2x3l_A 184 HGAHFGLQGF-PDSTLN-YQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYL-SYFQ----------------TS 244 (446)
T ss_dssp TCTTTTSTTS-CCCGGG-GTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHH-HHHS----------------CS
T ss_pred hhhhhccCCC-CCChHH-cCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHH-HHHc----------------CC
Confidence 9873323221 100111 158999999999999998999999987632101111000 0000 01
Q ss_pred CCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 349 SRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 349 sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
+.... ..++..+++.+...+.+++.++..++++++++. +++++.+.....+.+.+.+..
T Consensus 245 s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~~--------------- 304 (446)
T 2x3l_A 245 SPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGFT--------------- 304 (446)
T ss_dssp SCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTSC---------------
T ss_pred CchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCcC---------------
Confidence 11111 123334445444444445777888888888887 677765433234566553210
Q ss_pred HHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
..++.+.|.++|+. +.. .+..++|++++ ..++++++ +++++|+++.+.+
T Consensus 305 ~~~l~~~L~~~GI~-v~~---~g~~~iRi~~~-~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 305 GHDIQNWFMNAHIY-LEL---ADDYQALAILP-LWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp HHHHHHHHHHTTEE-ESE---ECSSCEEEECC-CCCTTCCC-CHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCE-EEe---cCCCEEEEEee-cCCCHHHH-HHHHHHHHHHHhh
Confidence 23566677777764 321 23468999985 56677799 9999999987644
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=206.12 Aligned_cols=326 Identities=14% Similarity=0.098 Sum_probs=210.3
Q ss_pred HHHHHHHHHhhcCCC---ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV---GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
+..+.+.+...+... ...|...+...++++.+.+ ++|.+.+ ..++|+||++++..++.+...
T Consensus 49 ~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~----~~g~~~~-------~v~~~~g~~~al~~~~~~~~~---- 113 (397)
T 2zyj_A 49 KEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAE----WIGVRPE-------EVLITTGSQQALDLVGKVFLD---- 113 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHH----HHTSCGG-------GEEEESHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHH----HhCCChh-------hEEEeccHHHHHHHHHHHhCC----
Confidence 344555554444321 1234333345566655544 4476544 689999999999877776532
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEE-EeecCCcc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFL-CATVGTTA 242 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~v-v~~~gtt~ 242 (486)
++..|++...+|.++...++..|. +++.+|.++ + .+|+++|++++++. .+.+| +.+.++|+
T Consensus 114 -------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~--~-~~d~~~l~~~l~~~-----~~~~v~~~~~~~np 175 (397)
T 2zyj_A 114 -------EGSPVLLEAPSYMGAIQAFRLQGP---RFLTVPAGE--E-GPDLDALEEVLKRE-----RPRFLYLIPSFQNP 175 (397)
T ss_dssp -------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEET--T-EECHHHHHHHHHHC-----CCSCEEECCBSCTT
T ss_pred -------CCCEEEEeCCCcHHHHHHHHHcCC---EEEecCcCC--C-CCCHHHHHHHHhhc-----CCeEEEECCCCcCC
Confidence 556788888999999999999999 999999875 3 39999999999751 12244 56888999
Q ss_pred ccccCCc---hHHHHHHHHhCceEEeeccccchhccCccchhhhcCC--C---CCCceeeccccccCCCCcceEEEeeCc
Q 038818 243 ITTVDPL---GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI--E---GADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 243 ~G~idpl---~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~--~---~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
+|.+-|. ++|+++|++||+++++|++|+.+......... +..+ . .-..+..++||+++....+|++++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~- 253 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPS-LFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP- 253 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCC-HHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH-
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCc-hhhhCcccCCCeEEEEecccccccccceeEEEecCH-
Confidence 9998775 48999999999999999999875432111011 1111 1 12266788999999335689888863
Q ss_pred hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhC-C
Q 038818 315 NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV---ANLRNFLRSHVRMAQLFQELVGG-D 390 (486)
Q Consensus 315 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~---~g~~~~~~~~~~~a~~l~~~L~~-~ 390 (486)
+...........+. .+ ...+..+++...+.. +.++++.++..++++++.+.|++ +
T Consensus 254 ~~~~~l~~~~~~~~-------------------~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 312 (397)
T 2zyj_A 254 EALQKLVQAKQGAD-------------------LH--TPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREV 312 (397)
T ss_dssp HHHHHHHHHHHHHH-------------------SS--CCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhc-------------------CC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33221111000000 00 122333333333322 45677778888899999999987 5
Q ss_pred C-CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC----CEeEEEEEecCCCCcH
Q 038818 391 N-RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA----GIYFIRFAVGATLTED 465 (486)
Q Consensus 391 ~-~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----~~~~lR~~~~~~~tt~ 465 (486)
| ++++..+.....+.+.+.... + ..++.+.|.++|+.+..+..+. +..++|+++..+ ++
T Consensus 313 ~~g~~~~~~~~g~~~~~~~~~~~------------~--~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~--~~ 376 (397)
T 2zyj_A 313 PKEVRYTRPKGGMFVWMELPKGL------------S--AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL--DR 376 (397)
T ss_dssp CTTSEECCCSBSSEEEEECSTTC------------C--HHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS--CH
T ss_pred CCCeEEccCCccEEEEEEcCCCC------------C--HHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC--CH
Confidence 7 588765544556666664210 1 2456777777887544433231 356899999643 78
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038818 466 RHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 466 ~did~~i~~l~~~~~~l~~ 484 (486)
++|+++++.|.++++++.+
T Consensus 377 ~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 377 EGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8999999999999887653
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-24 Score=213.23 Aligned_cols=330 Identities=11% Similarity=0.042 Sum_probs=212.3
Q ss_pred HHHHHHHHHhhcCC-Cccccc------cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNV-VGFNWM------SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARD 159 (486)
Q Consensus 87 ~~~~~~~l~~~~n~-~~~~~~------~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~ 159 (486)
+..+.+.+...+.. ....|. ..+....+|+.+++++++++|.+.. -+++++||+|+..++.++..
T Consensus 36 ~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~--------~i~~~sGt~a~~~~~~~~~~ 107 (407)
T 2dkj_A 36 SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWA--------NVQPHSGSQANMAVYMALME 107 (407)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcc--------eEEecchHHHHHHHHHHhcC
Confidence 44455666555532 222221 2333346777777899999998643 35556678888888777632
Q ss_pred HHHHHccccCCCCeEEEecCCCchHH---HHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEE
Q 038818 160 QILNEIGRENISRLVVYGSDQTHSAL---QKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLC 235 (486)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~s~~~H~s~---~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv 235 (486)
++..|+++..+|.++ ..+++..|. .+..++++.+ +++.+|+++|++++++.. +.+|+
T Consensus 108 -----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~v~ 168 (407)
T 2dkj_A 108 -----------PGDTLMGMDLAAGGHLTHGSRVNFSGK---LYKVVSYGVRPDTELIDLEEVRRLALEHR-----PKVIV 168 (407)
T ss_dssp -----------TTCEEEEECGGGTCCGGGTCTTSHHHH---HSEEEEECCCTTTSSCCHHHHHHHHHHHC-----CSEEE
T ss_pred -----------CCCEEEEecccccCccchHHHHHhcCc---eEEEEecCCCcccCccCHHHHHHHHhhcC-----CeEEE
Confidence 566788888888776 355555565 4455555311 257899999999997531 23566
Q ss_pred eecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 236 ATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 236 ~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
++.+.+ |.+.|+++|.++|++||+++++|++|+.++...+.... .++..|.++.++||+++++.+ |+++++++.
T Consensus 169 ~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~ 242 (407)
T 2dkj_A 169 AGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN---PLPYAHVVTSTTHKTLRGPRG-GLILSNDPE 242 (407)
T ss_dssp ECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC---CTTTCSEEEEESSGGGCCCSC-EEEEESCHH
T ss_pred Eecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCC---ccccccEEEEeccccCCCCCc-eEEEECCHH
Confidence 655555 47889999999999999999999999875543322111 123479999999999988875 888887554
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE 394 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 394 (486)
...........+. ..+.... ..++..++..+..++++++.++..++++++.+.|+++ +++
T Consensus 243 ~~~~l~~~~~~~~------------------~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 303 (407)
T 2dkj_A 243 LGKRIDKLIFPGI------------------QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYR 303 (407)
T ss_dssp HHHHHHHHHTTTT------------------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred HHHHHHhhhcccc------------------cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-Cce
Confidence 4332111000010 0010111 1233445554445678899999999999999999988 888
Q ss_pred EecC-CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee------ECCEeEEEEEecCC---CCc
Q 038818 395 IVAP-RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM------VAGIYFIRFAVGAT---LTE 464 (486)
Q Consensus 395 ~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------~~~~~~lR~~~~~~---~tt 464 (486)
++.+ ...+++++.+.... . ....+.+.|.+.|+.+..+.. .....++|+++..+ ..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~ 370 (407)
T 2dkj_A 304 IVTGGTDNHLFLVDLRPKG---------L----TGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFT 370 (407)
T ss_dssp EGGGSCSSSEEEEECGGGT---------C----CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCC
T ss_pred eecCCCCceEEEEECcccC---------C----CHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCC
Confidence 8753 45677777775311 0 123566677777875433221 11246799998532 267
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038818 465 DRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 465 ~~did~~i~~l~~~~~~ 481 (486)
++|+++++++|++++++
T Consensus 371 ~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 371 PEEMPLVAELIDRALLE 387 (407)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88999999999998766
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-23 Score=219.52 Aligned_cols=325 Identities=11% Similarity=0.005 Sum_probs=206.7
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH-HHHcCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA-AQIAGI 194 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a-~~~~G~ 194 (486)
.++.+.+++++|.+. ..++++|+|+||..++.+... +++.|+++...|.|+..+ ++..|+
T Consensus 176 ~e~e~~lA~~~gae~--------~i~v~nGtt~an~~ai~al~~-----------pGD~VLv~~~~H~S~~~~~~~l~Ga 236 (730)
T 1c4k_A 176 VAAEKHAARVYNADK--------TYFVLGGSSNANNTVTSALVS-----------NGDLVLFDRNNHKSVYNSALAMAGG 236 (730)
T ss_dssp HHHHHHHHHHTTCSE--------EEEESSHHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHCCCc--------EEEECCHHHHHHHHHHHHhcC-----------CCCEEEEcCCchHHHHHHHHHHCCC
Confidence 456688999999874 357788878999887776543 677899999999999988 888888
Q ss_pred CCCCeEEEecCCCC---CcccCHHHH-----HHHHHHH-HH--CCCcc-EEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 195 DPKNFRAIKTTKSS---SFTLTPESL-----QAAIDLD-IQ--AGLIP-LFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 195 g~~~v~~v~~d~~~---~~~~d~~~L-----~~~l~~~-~~--~g~~p-~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
+++.++.+.++ .+.+|+++| +++|++. .+ ....| .+|+++.+ |++|.+.|+++|+++|++||++
T Consensus 237 ---~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~ 312 (730)
T 1c4k_A 237 ---RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDY 312 (730)
T ss_dssp ---EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSE
T ss_pred ---EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCe
Confidence 88888765321 135788888 7777543 11 01123 46777776 5799999999999999999999
Q ss_pred EEeeccccchhccCccchh--hhcC-CCCCC----ceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 263 VHVDAAYAGSACICPEFRH--FIDG-IEGAD----SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~--~~~~-~~~aD----si~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
+|||+||+++..+.+..++ .+.. ..++| +++.++||++++|.++|+++++++... ....++...
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~-----g~~~~i~~~---- 383 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIK-----GQLRYCDHK---- 383 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGT-----TSTTCCCHH----
T ss_pred EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhc-----CcccccCHH----
Confidence 9999999865544443321 1110 11577 899999999999988999999887431 000111000
Q ss_pred CCccCCCCccccCCCCC--CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecCCC------------
Q 038818 336 KQVVDYKDWQITLSRRF--RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAPRN------------ 400 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~--~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~------------ 400 (486)
..+......+.+... ...++-.+++.+..++..+++++..++++++++.|++ +++++++.+..
T Consensus 384 --~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~ 461 (730)
T 1c4k_A 384 --HFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTE 461 (730)
T ss_dssp --HHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHH
T ss_pred --HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccc
Confidence 000000001111111 1123333444444434466788999999999999988 78999865421
Q ss_pred ------------------------e---eE----EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC
Q 038818 401 ------------------------F---AV----VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA 449 (486)
Q Consensus 401 ------------------------~---~~----v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 449 (486)
. .+ +.|...+... .++ +....+.....+.+.|.++|+. +.. .
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~--~~g-~~~~~g~~~~~l~~~L~e~GI~-v~~---~ 534 (730)
T 1c4k_A 462 DMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINP--ETG-DYEDFGVPATIVANYLRDHGII-PEK---S 534 (730)
T ss_dssp HHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEET--TTT-EECSSCCCHHHHHHHHHHTTCC-CSE---E
T ss_pred cccccchhhccCccchhccccccCCcccccCCeEEEEEeCCccc--ccc-cccccCCCHHHHHHHHHHCCcE-EEE---C
Confidence 0 01 4454421000 000 0000011134566677777863 322 2
Q ss_pred CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 450 GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 450 ~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+...+|+++ ++.+|++++++++++|.++.+.+
T Consensus 535 ~~~~ir~~~-s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 535 DLNSILFLM-TPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp CSSEEEEEC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEe-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 345789887 57889999999999999987654
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=205.13 Aligned_cols=314 Identities=12% Similarity=0.072 Sum_probs=212.7
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|...+...++++.+.+++.+.+|.+... ...++|+||++|+..++.+...
T Consensus 45 ~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~-------- 111 (370)
T 2z61_A 45 KPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIP-----DNIIITGGSSLGLFFALSSIID-------- 111 (370)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG-----GGEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-----hhEEECCChHHHHHHHHHHhcC--------
Confidence 344455544443323345444557889999999999988864321 2789999999999888777632
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.++..+++..|. +++.+| +|+++|++++++. +.+|+++.++|++|.+.
T Consensus 112 ---~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~--------~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~ 171 (370)
T 2z61_A 112 ---DGDEVLIQNPCYPCYKNFIRFLGA---KPVFCD--------FTVESLEEALSDK------TKAIIINSPSNPLGEVI 171 (370)
T ss_dssp ---TTCEEEEESSCCTHHHHHHHHTTC---EEEEEC--------SSHHHHHHHCCSS------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEeCCCchhHHHHHHHcCC---EEEEeC--------CCHHHHHHhcccC------ceEEEEcCCCCCcCccc
Confidence 567788899999999999999999 888886 5899999888642 45677889999999999
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcC-
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALST- 323 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~- 323 (486)
|++ |.++|++||+++++|++|+.+.... ..... +.+....|.+..++||+++.| ..+|+++.+++ ... .+..
T Consensus 172 ~~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~-~~~~~ 247 (370)
T 2z61_A 172 DRE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDE-IIE-AILKL 247 (370)
T ss_dssp CHH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHH-HHH-HHHHH
T ss_pred CHH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHH-HHH-HHHHH
Confidence 999 9999999999999999998754321 11111 112336788899999999733 34788887653 322 2211
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
...+.. ....+..+++...+ +.++++++.++..++++++.+.|+++ ++++.. +.
T Consensus 248 ~~~~~~---------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~ 304 (370)
T 2z61_A 248 QQNLFI---------------------SAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNN-PI 304 (370)
T ss_dssp HHHHTS---------------------SSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCC-CC
T ss_pred Hhhccc---------------------CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecC-CC
Confidence 000000 11223333333333 35567788888899999999999887 777653 34
Q ss_pred eeEEE-EEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 401 FAVVC-FRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 401 ~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+.+. +.+... ..++.+.+. +.|+.+..+..+. +..++|+++. +++++|+++++.|.
T Consensus 305 ~~~~~~~~~~~~----------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~---~~~~~i~~~~~~l~ 365 (370)
T 2z61_A 305 GAYYVFPNIGED----------------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA---NSYENIKEGLERIK 365 (370)
T ss_dssp BTTEECCBCSSC----------------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC---SCHHHHHHHHHHHH
T ss_pred cceEEEEecCCC----------------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe---CCHHHHHHHHHHHH
Confidence 34333 333211 235666665 5687544332222 3568999985 57789999999998
Q ss_pred HHHH
Q 038818 477 EKLD 480 (486)
Q Consensus 477 ~~~~ 480 (486)
++++
T Consensus 366 ~~l~ 369 (370)
T 2z61_A 366 EFLN 369 (370)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8753
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-22 Score=196.86 Aligned_cols=294 Identities=14% Similarity=0.063 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
..++++.+.+++.+.+|++... ...++|+|+++++..++.+... +++.|+++..+|.++..+++
T Consensus 71 ~~~l~~~la~~l~~~~g~~~~~-----~~v~~~~G~~~al~~~~~~l~~-----------~gd~Vl~~~~~y~~~~~~~~ 134 (369)
T 3cq5_A 71 AVELRDELAAYITKQTGVAVTR-----DNLWAANGSNEILQQLLQAFGG-----------PGRTALGFQPSYSMHPILAK 134 (369)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCS-----------TTCEEEEEESSCTHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCCCCh-----HhEEECCChHHHHHHHHHHhcC-----------CCCEEEEcCCChHHHHHHHH
Confidence 3689999999999887765221 2689999999988777766532 56678888899999999999
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
..|. +++.+|.+. ++.+|+++|++++++. .+.+|+++.++|++|.+.|++++.++|+.+++++++|++|+
T Consensus 135 ~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~ 204 (369)
T 3cq5_A 135 GTHT---EFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYA 204 (369)
T ss_dssp HTTC---EEEEEECCT--TSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTG
T ss_pred HcCC---EEEEecCCc--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCch
Confidence 9999 999999864 5689999999999762 13367778999999999999999999999999999999998
Q ss_pred chhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 271 GSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
.+... .............+.+..++||+++.| ..+|+++++++ ... .+...... +
T Consensus 205 ~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~-~l~~~~~~----------------~----- 260 (369)
T 3cq5_A 205 EFSPS-PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPA-FID-AVMLVRLP----------------Y----- 260 (369)
T ss_dssp GGCCS-CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTH-HHH-HHHTTSCT----------------T-----
T ss_pred hhcCC-cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHH-HHH-HHHHcCCC----------------C-----
Confidence 76532 111111111111457888999999744 45788888654 332 22111000 0
Q ss_pred CCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 350 RRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
....+..+++...+. .+.+++..++..++++++.+.|++. ++++. ++..+++.+.+... .
T Consensus 261 -~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~----------------~ 321 (369)
T 3cq5_A 261 -HLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDFSD----------------Q 321 (369)
T ss_dssp -CSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECCSS----------------H
T ss_pred -CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCC----------------H
Confidence 022344444444432 3457778888889999999999874 78876 55566676665311 2
Q ss_pred HHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.++.+.+.++|+. +.+. ....++|+++. +++|+++++++|+++++
T Consensus 322 ~~l~~~l~~~gi~-v~~~--~~~~~iRis~~----~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 322 HAAWQAFLDRGVL-IRDV--GIAGHLRTTIG----VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHHTTEE-CBCC--SCTTEEEEECC----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEE-EEEC--CCCCeEEEEeC----CHHHHHHHHHHHHHHHh
Confidence 3566667677864 3333 22468999984 67899999999998753
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=207.91 Aligned_cols=324 Identities=15% Similarity=0.097 Sum_probs=212.6
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN 169 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 169 (486)
+.+.+...+......|.......++++.+.+|+.+.+|.+.+ ....++|+||++|+..++.+...
T Consensus 49 v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~g~~~al~~~~~~l~~---------- 113 (385)
T 1b5p_A 49 VKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVT-----PEETIVTVGGSQALFNLFQAILD---------- 113 (385)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCC-----GGGEEEESHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----hHHEEEcCChHHHHHHHHHHhcC----------
Confidence 344444333222234544445688999999999998886432 12789999999999887766532
Q ss_pred CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC-
Q 038818 170 ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP- 248 (486)
Q Consensus 170 ~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp- 248 (486)
+++.|+++..+|.++...++..|. +++.+|+++.+++.+|+++|++++++. +.+|+++.++|+||.+-|
T Consensus 114 -~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~ 183 (385)
T 1b5p_A 114 -PGDEVIVLSPYWVSYPEMVRFAGG---VVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPK 183 (385)
T ss_dssp -TTCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCH
T ss_pred -CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCcccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCCcCH
Confidence 567788888999999999999999 999999975335789999999988642 447788899999999855
Q ss_pred --chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC-CCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC
Q 038818 249 --LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 249 --l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~ 324 (486)
+++|+++|++||+++++|++|+.+.... .... +..+. ..+.+..+++|+++.| ..+|+++.++ ..........
T Consensus 184 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~-~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~-~~~~~l~~~~ 260 (385)
T 1b5p_A 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFS-PGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPK-EVIKAMASVS 260 (385)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCC-GGGTCTTTEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCC-HHHcCCCCEEEEEechhhcCCcccceEEEEeCH-HHHHHHHHHH
Confidence 8999999999999999999997643311 1111 11111 3456677899999754 3488888754 3322111100
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-----GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
.+. +.....+..+++...+ +.+.+++..++..++++++.+.|+++ ++++.. +
T Consensus 261 -~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~ 317 (385)
T 1b5p_A 261 -RQS--------------------TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVR-P 317 (385)
T ss_dssp -HTT--------------------TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-C
T ss_pred -hhc--------------------cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC-C
Confidence 000 0011223333333333 34557778888888999999999887 777653 4
Q ss_pred CeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 400 NFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 400 ~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
..+.+ ...+.... . + ..++.+.|.++|+.+..+..+...+++|++++ +++++|+++++.|.++
T Consensus 318 ~~~~~~~~~~~~~~---------~--~--~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~---~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 318 SGAFYVLMDTSPIA---------P--D--EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA---TSEENLRKALERFARV 381 (385)
T ss_dssp SBTTEEEEECTTTC---------S--S--HHHHHHHHHHTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHGGGG
T ss_pred CeeEEEEEecCCCC---------C--C--HHHHHHHHHHCCeEEecccccCCCCeEEEEec---CCHHHHHHHHHHHHHH
Confidence 43333 33332111 0 1 23566777777875444433322468999984 5777999999888765
Q ss_pred HH
Q 038818 479 LD 480 (486)
Q Consensus 479 ~~ 480 (486)
++
T Consensus 382 l~ 383 (385)
T 1b5p_A 382 LG 383 (385)
T ss_dssp C-
T ss_pred Hh
Confidence 43
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-23 Score=206.49 Aligned_cols=334 Identities=11% Similarity=0.049 Sum_probs=216.3
Q ss_pred HHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+...+... ...|...+...++++.+.+++.+.+|.+.+. ...+++|+||++|+..++.+...
T Consensus 53 ~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~----~~~v~~t~g~~~a~~~~~~~~~~------- 121 (412)
T 2x5d_A 53 PHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDP----ESEAIVTIGSKEGLAHLMLATLD------- 121 (412)
T ss_dssp HHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCT----TTSEEEESCHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC----CcCEEEcCChHHHHHHHHHHhCC-------
Confidence 34555565555432 2345444557889999999998888864210 01689999999999888776532
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..+|.++...++..|. +++.+|+++++.+.+|+++|++++++. +.+|+++.++|++|.+
T Consensus 122 ----~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~nptG~~ 188 (412)
T 2x5d_A 122 ----HGDTILVPNPSYPIHIYGAVIAGA---QVRSVPLVPGIDFFNELERAIRESIPK------PRMMILGFPSNPTAQC 188 (412)
T ss_dssp ----TTCEEEEEESCCHHHHHHHHHHTC---EEEEEECSTTSCHHHHHHHHHHTEESC------CSEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCCccCCCCCHHHHHHhcccC------ceEEEECCCCCCCCCc
Confidence 566788888999999999999999 999999986424568999999887632 3467778899999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~ 320 (486)
-| +++|+++|++||+++++|++|+.+.......... +.+....|.++.++||+++ ....+|++++++ .... .
T Consensus 189 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~-~ 266 (412)
T 2x5d_A 189 VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNP-ELVS-A 266 (412)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECH-HHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCH-HHHH-H
Confidence 65 6889999999999999999998754321111111 1111356788999999997 334678888753 3322 2
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
+.....+.. . ....+..+++...+ +.++++++.++..++++++.+.|+++ ++++. +
T Consensus 267 l~~~~~~~~------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~ 324 (412)
T 2x5d_A 267 LARIKSYHD------------------Y--GTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVE-N 324 (412)
T ss_dssp HHHHHHHHC------------------C--CCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC-C
T ss_pred HHHHHhhhc------------------c--CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec-C
Confidence 211000000 0 11223333333333 35677888888999999999999887 77765 3
Q ss_pred CCee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+..+ .+.+.+... .. .....++.+.|.+ .|+.+..+..+. +..++|+++.. ++++|+++++.
T Consensus 325 ~~~g~~~~~~~~~~---------~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~~~~l~~~l~~ 390 (412)
T 2x5d_A 325 PKASMYVWAKIPEP---------YA--HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE---NRDRLRQAVRG 390 (412)
T ss_dssp CSBSSEEEEECCTT---------TG--GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHH
T ss_pred CCeeeEEEEEcCCc---------cC--CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC---CHHHHHHHHHH
Confidence 4444 445555321 00 0012356666654 587544333222 25689999853 67899999999
Q ss_pred HHHHHHHHh
Q 038818 475 VQEKLDGIL 483 (486)
Q Consensus 475 l~~~~~~l~ 483 (486)
|.++++++.
T Consensus 391 l~~~l~~~~ 399 (412)
T 2x5d_A 391 IKAMFRADG 399 (412)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 999887643
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=210.54 Aligned_cols=303 Identities=12% Similarity=0.096 Sum_probs=200.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+ .+++++|||+|+..++.++... ++..|+++..+|.+...+++..|+
T Consensus 60 ~l~~~la~~~~~~---------~~i~~~~gt~al~~~l~~~~~~----------~gd~vl~~~~~~~~~~~~~~~~g~-- 118 (391)
T 3dr4_A 60 EFEKAFADYCGVK---------HAIACNNGTTALHLALVAMGIG----------PGDEVIVPSLTYIASANSVTYCGA-- 118 (391)
T ss_dssp HHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHTCC----------TTCEEEEESSSCTHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCCC---------cEEEeCCHHHHHHHHHHHcCCC----------CcCEEEECCCchHHHHHHHHHCCC--
Confidence 3445567777764 4689999999998888776211 567888999999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.+++++ +++.+|+++|+++++++ +.+|+ +++++|.+.|+++|+++|++||+++++|+||+.+....
T Consensus 119 -~~~~~~~~~-~~~~~d~~~l~~~~~~~------~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~ 187 (391)
T 3dr4_A 119 -TPVLVDNDP-RTFNLDAAKLEALITPR------TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYR 187 (391)
T ss_dssp -EEEEECBCT-TTCSBCGGGSGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred -EEEEEecCc-cccCcCHHHHHHhcCCC------ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceEC
Confidence 999999985 35799999999988643 33444 45789999999999999999999999999998655443
Q ss_pred ccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchH
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK 356 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~ 356 (486)
+.... .+..+++++++.||+++++ .+|+++.+++.......... .+ ... ... .+ +....+..+....
T Consensus 188 ~~~~~---~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~-~~-g~~---~~~--~~--~~~~~g~~~~~~~ 254 (391)
T 3dr4_A 188 GKKSG---SLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLR-GQ-GMD---PNR--RY--WFPIVGFNYRMTN 254 (391)
T ss_dssp TEETT---SSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHH-BT-TCC---TTS--TT--CCSSCCCBCBCCH
T ss_pred Ceeec---ccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHH-hc-CCC---CCC--cc--cccccccccCCCH
Confidence 32111 1223556666689999764 46666666654432211100 00 000 000 00 0111122233444
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--C-----CeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 357 LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--R-----NFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 357 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~-----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
+.+++.....++++++.++..++++++.+.|+++ ++++..+ + ...++.+.+.... +....
T Consensus 255 l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~ 321 (391)
T 3dr4_A 255 IQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL------------STTRD 321 (391)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC------------SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc------------chhHH
Confidence 4555554455778889999999999999999988 8877654 2 1224556554310 00134
Q ss_pred HHHHHHHhcCcEEEeeee-------E-------------CCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLYVSHGM-------V-------------AGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~~~~-------~-------------~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
++.+.|.++|+.+..... + .....+|+++ ++.+|++|||+++++|+++
T Consensus 322 ~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 322 QVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPT-HAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp HHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccC-CCCCCHHHHHHHHHHHHHH
Confidence 677777788874332210 0 0145799987 5788999999999999865
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=204.94 Aligned_cols=287 Identities=15% Similarity=0.095 Sum_probs=201.2
Q ss_pred HHHHHHHHHHcCC-CCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC
Q 038818 116 NIVMDWLGEMLKL-PKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI 194 (486)
Q Consensus 116 ~~~~~~l~~l~g~-~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~ 194 (486)
.++++++++++|. +.+ ..++|+|||+++..++.+... +++.|+++..+|.++..+++..|.
T Consensus 70 ~~l~~~la~~~g~~~~~-------~i~~~~g~t~a~~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~g~ 131 (367)
T 3euc_A 70 EALRAKLKEVMQVPAGM-------EVLLGNGSDEIISMLALAAAR-----------PGAKVMAPVPGFVMYAMSAQFAGL 131 (367)
T ss_dssp HHHHHHHHHHHTCCTTC-------EEEEEEHHHHHHHHHHHHTCC-----------TTCEEEEEESCSCCSCHHHHTTTC
T ss_pred HHHHHHHHHHhCCCCcc-------eEEEcCCHHHHHHHHHHHHcC-----------CCCEEEEcCCCHHHHHHHHHHcCC
Confidence 3456778888898 433 789999999999877776532 566788888999999899999999
Q ss_pred CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHHHHh--CceEEeeccc
Q 038818 195 DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIAKRY--SIWVHVDAAY 269 (486)
Q Consensus 195 g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~~~~--g~~lhvD~a~ 269 (486)
+++.+|+++ ++.+|+++|++++++.. +.+|+++.++|++|.+ +++++|+++|++| |+++++|++|
T Consensus 132 ---~~~~v~~~~--~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~ 201 (367)
T 3euc_A 132 ---EFVGVPLRA--DFTLDRGAMLAAMAEHQ-----PAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAY 201 (367)
T ss_dssp ---EEEEEECCT--TSCCCHHHHHHHHHHHC-----CSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTT
T ss_pred ---eEEEecCCC--CCCCCHHHHHHHhhccC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcc
Confidence 999999986 67999999999998731 3377788999999999 4578888889999 9999999999
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+.+.. . .....+. ....+.+..++||++..+..+|+++.+ +............ +
T Consensus 202 ~~~~~-~-~~~~~~~-~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~-----------------~----- 255 (367)
T 3euc_A 202 QPFAQ-E-SWMSRLT-DFGNLLVMRTVSKLGLAGIRLGYVAGD-PQWLEQLDKVRPP-----------------Y----- 255 (367)
T ss_dssp CCSSS-C-CSGGGGG-TCTTEEEEEECCCTTSCSCCEEEEEEC-HHHHHHHGGGCCS-----------------S-----
T ss_pred hhhcc-c-chHHHHh-hCCCEEEEecchhhcccccCceeeeeC-HHHHHHHHHhCCC-----------------C-----
Confidence 76431 1 1111111 123446778899994455567888774 3333322111100 0
Q ss_pred CCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 350 RRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
....+..+++...+. .+++++..++..++++++.+.|+++|++++. ++..+.+.+.+. . .
T Consensus 256 -~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~-~----------------~ 316 (367)
T 3euc_A 256 -NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP-D----------------A 316 (367)
T ss_dssp -CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS-C----------------H
T ss_pred -CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC-C----------------H
Confidence 012333344444332 4567888899999999999999999999854 555566666553 1 2
Q ss_pred HHHHHHHHhcCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.++.+.|.++|+.+.....+ .+.+++|+++. +++|+++++++|++++
T Consensus 317 ~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 317 AQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS----TPEENAQFLEAFAASL 365 (367)
T ss_dssp HHHHHHHHTTTEECEECGGGCGGGTTEEEEECC----CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCeEEEECCccCCCCCCEEEEecC----CHHHHHHHHHHHHHHh
Confidence 35667777788754333221 13568999974 7789999999998875
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=205.35 Aligned_cols=312 Identities=10% Similarity=0.066 Sum_probs=210.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCC
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQT 181 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~ 181 (486)
..|...+...++++.+.+|+.+.+|++.+ ....++|+||++|+..++.+... ++ +.|+++..+
T Consensus 70 ~~y~~~~g~~~lr~~la~~l~~~~g~~~~-----~~~i~~~~g~~~al~~~~~~l~~-----------~g~d~vl~~~p~ 133 (398)
T 3ele_A 70 HGYTSAQGDVETRAAIAEFLNNTHGTHFN-----ADNLYMTMGAAASLSICFRALTS-----------DAYDEFITIAPY 133 (398)
T ss_dssp HSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHHHHCC-----------STTCEEEEESSC
T ss_pred CCcCCCCCcHHHHHHHHHHHHHHhCCCCC-----hHHEEEccCHHHHHHHHHHHHcC-----------CCCCEEEEeCCC
Confidence 34544455688999999999999986432 13789999999999888777643 55 778889999
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKR 258 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~ 258 (486)
|.++...++..|. +++.+|++++ ++.+|+++|++++++. +.+|+++.++|++|.+-| +++|+++|++
T Consensus 134 ~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~ 203 (398)
T 3ele_A 134 FPEYKVFVNAAGA---RLVEVPADTE-HFQIDFDALEERINAH------TRGVIINSPNNPSGTVYSEETIKKLSDLLEK 203 (398)
T ss_dssp CTHHHHHHHHTTC---EEEEECCCTT-TSSCCHHHHHHTCCTT------EEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHcCC---EEEEEecCCc-CCcCCHHHHHHHhCcC------CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999 9999999753 5799999999988643 457888899999999987 7777799999
Q ss_pred ------hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchH----HHHHhcCCccc
Q 038818 259 ------YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNA----LIKALSTNPEF 327 (486)
Q Consensus 259 ------~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~----~~~~~~~~~~y 327 (486)
||+++++|++|+.+......... .......+.+..+++|+++ .+..+|+++++++.. +...+......
T Consensus 204 ~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 282 (398)
T 3ele_A 204 KSKEIGRPIFIIADEPYREIVYDGIKVPF-VTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRA 282 (398)
T ss_dssp HHHHHTSCCEEEEECTTTTCBCTTCCCCC-GGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEEeccccccccCCCCcCC-hHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhh
Confidence 99999999999775432111111 1112245577889999998 556789998876521 11111000000
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeE-EEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAV-VCF 406 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-v~f 406 (486)
. .......+..++....+.... ..++..++++++.+.|+++ ++++..+ ..+. +.+
T Consensus 283 ~-------------------~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~ 338 (398)
T 3ele_A 283 L-------------------GYVCAPSLFQKMIVKCQGATG---DINAYKENRDLLYEGLTRI-GYHCFKP-DGAFYMFV 338 (398)
T ss_dssp T-------------------TCCCSCHHHHHHHTTCTTCCC---CHHHHHHHHHHHHHHHHHH-TCCEECC-SBSSEEEE
T ss_pred c-------------------cccCCCHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHc-CCeecCC-CeeEEEEE
Confidence 0 000011222232222221111 3456677788888888876 7777644 4444 555
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+... + ..++.+.+.++|+.+..+..+...+++|+++. +++++|+++++.|+++++++.
T Consensus 339 ~~~~~-------------~--~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 339 KALED-------------D--SNAFCEKAKEEDVLIVAADGFGCPGWVRISYC---VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp ECSSS-------------C--HHHHHHHHHTTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHHHHC
T ss_pred EcCCC-------------C--HHHHHHHHHHCCEEEeCccccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHhh
Confidence 54321 1 24566677778875544443333568999983 588899999999999987753
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=200.01 Aligned_cols=287 Identities=12% Similarity=0.077 Sum_probs=201.9
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+.+ ..++|+|||+++..++.+... +++.|+++..+|.++...++..|.
T Consensus 69 ~lr~~la~~~~~~~~-------~v~~~~g~~~a~~~~~~~l~~-----------~gd~vl~~~~~~~~~~~~~~~~g~-- 128 (365)
T 3get_A 69 ELKSTLAQKYKVQNE-------NIIIGAGSDQVIEFAIHSKLN-----------SKNAFLQAGVTFAMYEIYAKQCGA-- 128 (365)
T ss_dssp HHHHHHHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCC-----------TTCEEEECSSCCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCCcc-------eEEECCCHHHHHHHHHHHHhC-----------CCCEEEEeCCChHHHHHHHHHcCC--
Confidence 455677888888655 789999999999877776532 567788999999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHH--HhCceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAK--RYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~--~~g~~lhvD~a~g~~~~ 274 (486)
+++.+|++. +++ +|+++|+++++++ +.+|+++.++|++|.+-|++++.++++ ++|+++++|++|+.+.+
T Consensus 129 -~~~~v~~~~-~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~ 199 (365)
T 3get_A 129 -KCYKTQSIT-HNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFAS 199 (365)
T ss_dssp -EEEECSSSS-CCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHH
T ss_pred -EEEEEecCC-CCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhc
Confidence 999999822 368 9999999998743 457888899999999999999999888 77999999999986542
Q ss_pred --cCcc---chhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 275 --ICPE---FRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 275 --~~~~---~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
.... ...... ....+.+..++||+++ .+..+|+++. +++...........|
T Consensus 200 ~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~--------------------- 256 (365)
T 3get_A 200 FKDSKKHLEPCELIK-EFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPF--------------------- 256 (365)
T ss_dssp HHCGGGCCCHHHHHH-HCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTT---------------------
T ss_pred ccCCcccccHhHHhc-cCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCC---------------------
Confidence 1111 111111 1245577889999997 4456888887 444333221111000
Q ss_pred CCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 349 SRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 349 sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
....+..+++...+ ..+++++..++..++++++.+.|+++ ++++. ++..+.+.+.+... .
T Consensus 257 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~---------------~ 317 (365)
T 3get_A 257 --NVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKII-DSYTNFITYFFDEK---------------N 317 (365)
T ss_dssp --CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECSSS---------------C
T ss_pred --CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCC---------------C
Confidence 01233333333333 23667888899999999999999988 88875 44556666665431 1
Q ss_pred HHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..++.+.|.++|+.+..+..+. ..++|+++. +++|+++++++|++++
T Consensus 318 ~~~~~~~l~~~gi~v~~g~~~~-~~~iRis~~----~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 318 STDLSEKLLKKGIIIRNLKSYG-LNAIRITIG----TSYENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHHTTTEECEECGGGT-CSEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEECccCC-CCEEEEEcC----CHHHHHHHHHHHHHHh
Confidence 3456777777887543333222 678999974 6789999999998865
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=205.93 Aligned_cols=326 Identities=14% Similarity=0.072 Sum_probs=209.4
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+..+ .|..++... ++++.+++++|.+ ..+++++||+|+..++.+++..
T Consensus 44 ~~v~~a~~~~~~~~--~y~~~~~~~----~l~~~la~~~~~~---------~~v~~~~Gt~a~~~~l~~~~~~------- 101 (399)
T 2oga_A 44 AETDAAIARVLDSG--RYLLGPELE----GFEAEFAAYCETD---------HAVGVNSGMDALQLALRGLGIG------- 101 (399)
T ss_dssp HHHHHHHHHHHHHT--CCSSSHHHH----HHHHHHHHHTTSS---------EEEEESCHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHhcC--CCCCchhHH----HHHHHHHHHHCCC---------eEEEecCHHHHHHHHHHHhCCC-------
Confidence 33444554444322 333344433 4456677888764 3588888999998887765211
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
++..|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++|++. +.+|+ +++++|.+.
T Consensus 102 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~ 165 (399)
T 2oga_A 102 ---PGDEVIVPSHTYIASWLAVSATGA---TPVPVEPHED-HPTLDPLLVEKAITPR------TRALL---PVHLYGHPA 165 (399)
T ss_dssp ---TTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCSS-SSSBCHHHHHHHCCTT------EEEEC---CBCGGGCCC
T ss_pred ---CcCEEEECCCccHHHHHHHHHCCC---EEEEEecCCC-CCCcCHHHHHHhcCCC------CeEEE---EeCCcCCcc
Confidence 566788898999999999999999 9999998752 5789999999988642 33444 467899999
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccc--cccCCCCcceEEEeeCchHHHHHhcCCc
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAH--KWFFTTLDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~h--K~l~~p~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
|+++|.++|+++|+++++|++|+.+.... ... +. ...|.+++++| |+++.|..+|++++++++..........
T Consensus 166 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~--~~~-~~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 166 DMDALRELADRHGLHIVEDAAQAHGARYR--GRR-IG--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp CHHHHHHHHHHHTCEECEECTTCTTCEET--TEE-TT--CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHcCCEEEEECcccccCccC--Cee-cc--cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHh
Confidence 99999999999999999999997654321 111 11 12588899985 9998754567777665654332211000
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC-eeE-
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN-FAV- 403 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-~~~- 403 (486)
+ ... ..+.........+...+.+++++..+ +.++++.++..++++++.+.|+++|++++...+. .+.
T Consensus 241 -~-g~~-------~~~~~~~~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 309 (399)
T 2oga_A 241 -Y-GSR-------QKYSHETKGTNSRLDEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPV 309 (399)
T ss_dssp -T-TCS-------STTCCCSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECC
T ss_pred -c-Ccc-------ccccccccccCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcce
Confidence 0 000 00100011112234455555555433 4566777888899999999999988887754332 221
Q ss_pred -EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee--EC--------C-------------EeEEEEEec
Q 038818 404 -VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM--VA--------G-------------IYFIRFAVG 459 (486)
Q Consensus 404 -v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~--------~-------------~~~lR~~~~ 459 (486)
+.|.+.... ..++.+.|.++|+.+..... .. + ..++|+++
T Consensus 310 ~~~~~~~~~~---------------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~- 373 (399)
T 2oga_A 310 WHLFTVRTER---------------RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPI- 373 (399)
T ss_dssp CSSEEEECSS---------------HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECC-
T ss_pred eEEEEEECCC---------------HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccC-
Confidence 124333211 23567777777874322110 00 0 25799998
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
++.++++|+++++++|+++++++.
T Consensus 374 ~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 374 GPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp STTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999999887653
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=207.63 Aligned_cols=341 Identities=13% Similarity=-0.002 Sum_probs=211.0
Q ss_pred cceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEE-cCCchHHHHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVI-QGTTCEAILCTL 154 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al 154 (486)
.+.+.+++...+..+.+.+....+........+|...++..++++++++++|++... .+++ |+|||+|+..++
T Consensus 41 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~------~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 41 DGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGY------EVILGNGGATAFWDAAA 114 (398)
T ss_dssp SCBCCSSSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTC------EEEEEETCHHHHHHHHH
T ss_pred CccccCCCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEeCCchhHHHHHHH
Confidence 334445554444444444443221211111235666677788999999999997421 5777 999999998877
Q ss_pred HHHHHHHHHHccccCCCCeEEEecCCCchH-HHHHHHHc--CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 155 AAARDQILNEIGRENISRLVVYGSDQTHSA-LQKAAQIA--GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~a~~~~--G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
.+... ++ +++++...|.. ....+... |. +++.||++. + ...+. + ++ ..+
T Consensus 115 ~~l~~-----------~g-v~~v~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~-g-~~~~~-~----i~------~~~ 166 (398)
T 2fyf_A 115 FGLID-----------KR-SLHLTYGEFSAKFASAVSKNPFVG---EPIIITSDP-G-SAPEP-Q----TD------PSV 166 (398)
T ss_dssp HHTCS-----------SC-EEEEECSHHHHHHHHHHHHCTTSC---CCEEEECCT-T-CCCCC-C----CC------TTC
T ss_pred HHhcC-----------CC-eEEEeCCHHHHHHHHHHHHhCCCC---ceEEEecCC-C-CCCCc-c----cc------CCC
Confidence 76532 34 33345445532 23345666 66 888999873 2 23332 1 22 124
Q ss_pred EEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEe
Q 038818 232 LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWV 311 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~ 311 (486)
.+|++++++|++|.+.|+++|.++ +|+++|+|+||+.+....+ +..+|+++.++||+++.|.++|++++
T Consensus 167 ~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~--------~~~~di~~~s~sK~~~~~gg~g~l~~ 235 (398)
T 2fyf_A 167 DVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVD--------IAETDAYYFAPQKNFASDGGLWLAIM 235 (398)
T ss_dssp SEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCC--------GGGCSEEEECTTSTTCSCSSEEEEEE
T ss_pred CEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccC--------cccCcEEEEecCcccCCCCceEEEEE
Confidence 578888999999999999999988 8999999999976543221 12489999999999998867888887
Q ss_pred eCchHHHHHhc------CCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHH-HHHHHHHHHHHHHHH
Q 038818 312 KNPNALIKALS------TNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVAN-LRNFLRSHVRMAQLF 383 (486)
Q Consensus 312 ~~~~~~~~~~~------~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l 383 (486)
+++ .+..... ..++|+...... .... ..... .+.. ....++..+++.+...| ++++.++..++++++
T Consensus 236 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l 310 (398)
T 2fyf_A 236 SPA-ALSRIEAIAATGRWVPDFLSLPIAV--ENSL-KNQTY-NTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRL 310 (398)
T ss_dssp CHH-HHHHHHHHHHTTCCCCGGGCHHHHH--HHHT-TTCCS-SCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHhhcccccCCCCCcEEehHHHh--hhcc-cCCCC-CCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 654 2222111 012232211000 0000 00000 1111 11234455565555555 888999999999999
Q ss_pred HHHHhCCCCeEEec-CC--Cee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEec
Q 038818 384 QELVGGDNRFEIVA-PR--NFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVG 459 (486)
Q Consensus 384 ~~~L~~~~~~~~~~-~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~ 459 (486)
.+.|+++|++++.. ++ ..+ +++|++.... + ..++.+.|.++|+.+..+....+..++|+++.
T Consensus 311 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~ 376 (398)
T 2fyf_A 311 YSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV------------D--AGTVAKILRANGIVDTEPYRKLGRNQLRVAMF 376 (398)
T ss_dssp HHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS------------C--HHHHHHHHHHTTCBCCSCCTTTCSSEEEEECC
T ss_pred HHHHHHcCCceeccCChhhcCCcEEEEECCCCC------------C--HHHHHHHHHHCCcEEecCcccCCCCEEEEEec
Confidence 99999988999874 23 355 7788774210 1 34567777777875432211123468999995
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~ 481 (486)
..++++|++++++.|++++++
T Consensus 377 -~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 377 -PAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp -TTSCHHHHHHHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHHHHHHh
Confidence 477888999999999998765
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=200.62 Aligned_cols=292 Identities=13% Similarity=0.048 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++++.+++++|.+ ..+++++||+++..++.+... ++..|+++...|.++..+++..
T Consensus 84 ~~~~~l~~~la~~~g~~---------~~i~~~sGt~a~~~~~~~~~~-----------~gd~v~~~~~~~~~~~~~~~~~ 143 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS---------RALLFISGFAANQAVIAAMMA-----------KEDRIAADRLSHASLLEAASLS 143 (384)
T ss_dssp HHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCC---------cEEEeCCcHHHHHHHHHHhCC-----------CCcEEEEcccccHHHHHHHHHc
Confidence 44556778888888875 246666679999887765432 5678888999999999999999
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|. +++.+|. +|+++|++++++.. ..+.+|+++.++|++|.+.|+++|.++|++||+++++|++|+.+
T Consensus 144 g~---~~~~~~~-------~d~~~l~~~l~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 210 (384)
T 1bs0_A 144 PS---QLRRFAH-------NDVTHLARLLASPC---PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTG 210 (384)
T ss_dssp SS---EEEEECT-------TCHHHHHHHHHSCC---SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CC---CEEEeCC-------CCHHHHHHHHHhcC---CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccc
Confidence 98 8888873 48999999887531 12457888889999999999999999999999999999999754
Q ss_pred hcc-C-ccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACI-C-PEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~-~-~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
... . ......+ + ...|.++.++||+++ |.| |+++++ ++...........|.. +.
T Consensus 211 ~~~~~~~~~~~~~-~-~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~-------------------~~ 266 (384)
T 1bs0_A 211 VIGEQGRGSCWLQ-K-VKPELLVVTFGKGFG-VSG-AAVLCS-STVADYLLQFARHLIY-------------------ST 266 (384)
T ss_dssp TSSGGGCCHHHHT-T-CCCSEEEEESSSTTS-SCC-EEEEEC-HHHHHHHHHHCHHHHS-------------------SB
T ss_pred eecCCCCchHHhc-C-CCCcEEEeeccchhh-ccC-cEEEeC-HHHHHHHHHhchhhhc-------------------CC
Confidence 321 0 0111111 1 257899999999998 545 877775 4333322111111211 00
Q ss_pred CCCchHH---HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 351 RFRALKL---WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 351 ~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
....+.+ ..+++.+...+.++..++..++++++.+.|+++ ++++. ++..+++.+.+.. ...
T Consensus 267 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------------~~~ 330 (384)
T 1bs0_A 267 SMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGD--------------NSR 330 (384)
T ss_dssp CCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEES--------------HHH
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCEEEEEeCC--------------HHH
Confidence 1122222 334443321155678888999999999999988 78875 3455666666642 223
Q ss_pred HHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 428 NRKLLESINASGQLYVSHGMV---AGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 428 ~~~l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
..++.+.|.++|+.+...... .+..++|+++. ..+++++++++++.|+++
T Consensus 331 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 331 ALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence 456777787788743322211 23578999985 566888999999999875
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=199.88 Aligned_cols=322 Identities=10% Similarity=0.028 Sum_probs=214.3
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|.. .. .++++.+.+++.+.+|.+... ...++|+|||+|+..++.+...
T Consensus 40 ~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~-----~~i~~t~g~~~a~~~~~~~~~~--------- 103 (377)
T 3fdb_A 40 AVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP-----EWIFPIPDVVRGLYIAIDHFTP--------- 103 (377)
T ss_dssp HHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG-----GGEEEESCHHHHHHHHHHHHSC---------
T ss_pred HHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH-----HHEEEeCChHHHHHHHHHHhcC---------
Confidence 3444554444333334443 33 678888999999888865321 3789999999999887776543
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
++..|+++..+|.++..+++..|. +++.+|+++ + +|+++|++++++. +.+|+++.++|++|.+-|
T Consensus 104 --~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~--~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~ 168 (377)
T 3fdb_A 104 --AQSKVIVPTPAYPPFFHLLSATQR---EGIFIDATG--G--INLHDVEKGFQAG------ARSILLCNPYNPLGMVFA 168 (377)
T ss_dssp --TTCCEEEEESCCTHHHHHHHHHTC---CEEEEECTT--S--CCHHHHHHHHHTT------CCEEEEESSBTTTTBCCC
T ss_pred --CCCEEEEcCCCcHhHHHHHHHcCC---EEEEccCCC--C--CCHHHHHHHhccC------CCEEEEeCCCCCCCCCCC
Confidence 456677888999999999999999 999999985 2 9999999999764 237888889999999865
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccC-ccchhhhcCC--CCCCceeeccccccC-CCCcceEEEeeCchHHHHHh
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACIC-PEFRHFIDGI--EGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~-~~~~~~~~~~--~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~ 321 (486)
+++|+++|++||+++++|++|+.+.... ..... +..+ ...+.+..+++|+++ ....+|++++.++.......
T Consensus 169 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~ 247 (377)
T 3fdb_A 169 PEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAA-GVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQ 247 (377)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG-GSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCccc-HHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHH
Confidence 6777778999999999999998754322 11111 1111 123366778999996 44567877776665543221
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAP 398 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~ 398 (486)
... .+.. .....+..+++...+ +.+.++++.++..++++++.+.|++ +|++++..+
T Consensus 248 ~~~-~~~~--------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (377)
T 3fdb_A 248 QLS-PVIK--------------------DGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM 306 (377)
T ss_dssp HSC-HHHH--------------------CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC
T ss_pred HHH-Hhhc--------------------CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 111 1100 011233333333332 3566788889999999999999988 789988744
Q ss_pred CCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
..+.+ .+.+..... ..++.+.+.++ |+.+..+..+. +..++|++++ +++++|+++++.
T Consensus 307 -~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~---~~~e~i~~~l~~ 368 (377)
T 3fdb_A 307 -QATYLMWIDFRDTTI--------------EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA---TSREVLEEAIDR 368 (377)
T ss_dssp -SBCSEEEEECTTSCC--------------CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHH
T ss_pred -CeeEEEEEECcccCC--------------CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC---CCHHHHHHHHHH
Confidence 44444 455543210 01234445444 77543332222 3578999985 378899999999
Q ss_pred HHHHHHH
Q 038818 475 VQEKLDG 481 (486)
Q Consensus 475 l~~~~~~ 481 (486)
|++++++
T Consensus 369 l~~~l~~ 375 (377)
T 3fdb_A 369 MAKAVSH 375 (377)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9988764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=201.09 Aligned_cols=301 Identities=11% Similarity=0.091 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH-
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ- 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~- 190 (486)
.....++++++++++|.+ .+++|+|||+|+..++.++.. +++.|+++...|.+....+.
T Consensus 55 ~~~~~~l~~~la~~~g~~---------~~~~~~~gt~a~~~al~~l~~-----------~gd~vi~~~~~~~~~~~~~~~ 114 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL---------EAVVLASGQAATFAALLALLR-----------PGDEVVAAKGLFGQTIGLFGQ 114 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHTTCC-----------TTCEEEEETTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchhHHHHHHH
Confidence 344556778889998864 478999999999888876532 56678889899988766543
Q ss_pred ---HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 191 ---IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 191 ---~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
..|+ +++.+|. |+++|+++|+++ +.+|+++.++|++|.+.|+++|+++|++||+++|+|+
T Consensus 115 ~~~~~g~---~~~~~~~--------~~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~ 177 (412)
T 2cb1_A 115 VLSLMGV---TVRYVDP--------EPEAVREALSAK------TRAVFVETVANPALLVPDLEALATLAEEAGVALVVDN 177 (412)
T ss_dssp TTTTTTC---EEEEECS--------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHcCC---EEEEECC--------CHHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEEC
Confidence 3566 7888764 388898888653 4578889999999999999999999999999999999
Q ss_pred cccch-hccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCchH-HHHHhcCCcccccCcc----CCCCCc-c
Q 038818 268 AYAGS-ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPNA-LIKALSTNPEFLRNKA----SDSKQV-V 339 (486)
Q Consensus 268 a~g~~-~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~~-~~~~~~~~~~y~~~~~----~~~~~~-~ 339 (486)
+|+.+ ....+ .. .++|.++.++||++++|.+ .|.+++.++.. +.+.....++...... ...... .
T Consensus 178 ~~~~~~~~~~~-~~------~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 250 (412)
T 2cb1_A 178 TFGAAGALCRP-LA------WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPE 250 (412)
T ss_dssp GGGTTTTSCCG-GG------GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHH
T ss_pred CCccccccCCc-cc------cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHH
Confidence 99876 32221 11 2689999999999998876 77777665321 0000000010000000 000000 0
Q ss_pred CCCCcc-ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------Ce
Q 038818 340 DYKDWQ-ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NF 401 (486)
Q Consensus 340 ~~~~~~-~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~ 401 (486)
.....+ ...+....+...|..+.. .+.+.+.+++..++++++.+.|.+.++++++..| ..
T Consensus 251 ~~r~~~~~~~g~~~~~~~a~~~~~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~ 328 (412)
T 2cb1_A 251 RVRTLGLSLCGMALSPFNAYLLFQG--LETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGG 328 (412)
T ss_dssp HHHHHHTTTTCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSC
T ss_pred HHHHHHHHhcCCCCChHHhHHHHcC--CchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCc
Confidence 000000 001112344555555543 3566777888889999999999999898855222 35
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee--------eEC----------------C--EeEEE
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG--------MVA----------------G--IYFIR 455 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--------~~~----------------~--~~~lR 455 (486)
++++|.+ +. . +.+.+.+.+.|+.. ... ... | .+.+|
T Consensus 329 ~iv~~~~-~~-------------~---~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR 390 (412)
T 2cb1_A 329 PILTLDL-GD-------------L---ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVR 390 (412)
T ss_dssp SEEEEEC-SS-------------H---HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEE
T ss_pred eEEEEEe-CC-------------H---HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEE
Confidence 6889988 42 2 23344444557644 321 000 1 46899
Q ss_pred EEecCCCCcHHHHHHHHHHHHH
Q 038818 456 FAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 456 ~~~~~~~tt~~did~~i~~l~~ 477 (486)
+|++ ..+++++|+.++++|++
T Consensus 391 ~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 391 VSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp EECC-SSCHHHHHHHHHHHHHC
T ss_pred EEec-cCCHHHHHHHHHHHHhh
Confidence 9995 67788899999999874
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-22 Score=198.24 Aligned_cols=301 Identities=13% Similarity=0.094 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++++.+++++|.+. ..++++ |+++|..++.+..... +++.|+++..+|.++..+++..
T Consensus 91 ~~~~~l~~~la~~~~~~~--------~i~~~s-G~~a~~~~~~~l~~~~---------~gd~Vl~~~~~~~~~~~~~~~~ 152 (401)
T 2bwn_A 91 AYHRRLEAEIAGLHQKEA--------ALVFSS-AYNANDATLSTLRVLF---------PGLIIYSDSLNHASMIEGIKRN 152 (401)
T ss_dssp HHHHHHHHHHHHHTTCSE--------EEEESC-HHHHHHHHHHHHHHHS---------TTCEEEEETTCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCc--------EEEECC-cHHHHHHHHHHHhcCC---------CCCEEEECchhhHHHHHHHHHc
Confidence 344556777888888642 455555 4558877766543210 5668888999999999999999
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
|+ +++.+|.+ |+++|+++++.... ..+.+|++++++|++|.+.|+++|+++|++||+++++|++|+.+
T Consensus 153 g~---~~~~v~~~-------d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g 220 (401)
T 2bwn_A 153 AG---PKRIFRHN-------DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVG 220 (401)
T ss_dssp CC---CEEEECTT-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CC---eEEEEcCC-------CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccc
Confidence 99 99999863 78999998874211 13568999999999999999999999999999999999999844
Q ss_pred hccCccchhh--hcCC-CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCCCccccC
Q 038818 273 ACICPEFRHF--IDGI-EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 273 ~~~~~~~~~~--~~~~-~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
.+ .+..... ..++ +..|.+..+++|+++.|. |+++.+ +.... .+.. ..++.... .
T Consensus 221 ~~-~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~~-~~~~~-~l~~~~~~~~~~~----------------~ 279 (401)
T 2bwn_A 221 MY-GPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAAS-ARMVD-AVRSYAPGFIFST----------------S 279 (401)
T ss_dssp TS-STTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEEC-HHHHH-HHHHHCHHHHTSB----------------C
T ss_pred cc-CCCCceeeeccCccccCcEEEeechhhccCCC--CEEecC-HHHHH-HHHHhCcCceecC----------------C
Confidence 32 1111111 1122 346788889999998753 666654 33322 2211 11111100 0
Q ss_pred CCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 349 SRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 349 sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
+......++..+++.+...++.++.++..++++++.+.|+++ ++++.. +..++++|.+.. +...
T Consensus 280 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~--------------~~~~ 343 (401)
T 2bwn_A 280 LPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD--------------PVHT 343 (401)
T ss_dssp CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC--------------HHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC--------------hHHH
Confidence 001122344556666655567888999999999999999887 777663 455677776642 2224
Q ss_pred HHHHHHHH-hcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 429 RKLLESIN-ASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 429 ~~l~~~l~-~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.++.+.|. +.|+.+ .+... .+..++|+++. ..++++||++++++|+++++++
T Consensus 344 ~~~~~~L~~~~gi~v-~~~~~~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 344 KAVSDMLLSDYGVYV-QPINFPTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp HHHHHHHHHHHCEEC-CEECTTTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCCEEE-eecCCCCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHhc
Confidence 46777775 668743 33221 13468999985 5678889999999999887653
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=201.28 Aligned_cols=310 Identities=11% Similarity=0.040 Sum_probs=193.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..+...++|+.+++++++++|.+.. ..++ ++||+|+..++.+... +++.|+++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~~la~~~g~~~~-------~i~~-~sGt~a~~~~~~~~~~-----------~gd~vl~~~~~~~~~~ 125 (417)
T 3n0l_A 65 GCEFVDEIETLAIERCKKLFNCKFA-------NVQP-NSGSQANQGVYAALIN-----------PGDKILGMDLSHGGHL 125 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE-------ECCC-SSHHHHHHHHHHHHSC-----------TTCEEEEECC------
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCc-------ceEe-ccHHHHHHHHHHHhcC-----------CCCEEEeccccccccc
Confidence 3455678998899999999998653 3444 5558999888777643 6677888888887765
Q ss_pred H---HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 187 K---AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 187 ~---a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
. .+...|.+. .++.++++ +++.+|+++|++++++.. +.+|+++.++ .|.+.|+++|.++|++||+++
T Consensus 126 ~~~~~~~~~g~~~-~~~~~~~~--~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~l 195 (417)
T 3n0l_A 126 THGAKVSSSGKMY-ESCFYGVE--LDGRIDYEKVREIAKKEK-----PKLIVCGASA--YARVIDFAKFREIADEIGAYL 195 (417)
T ss_dssp ----------CCS-EEEEECCC--TTSSCCHHHHHHHHHHHC-----CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEE
T ss_pred chhhhhhhhccee-eeEeccCC--CCCCcCHHHHHHHHHhcC-----CeEEEECCcc--cCccCCHHHHHHHHHHcCCEE
Confidence 4 334445411 34455555 467899999999998431 3366666655 399999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
++|++|+.+......... .+..+|.++.++||++.+|. +|+++.+++..............
T Consensus 196 i~Dea~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~-~G~~~~~~~~~~~~~~~~~~~~~--------------- 256 (417)
T 3n0l_A 196 FADIAHIAGLVVAGEHPS---PFPYAHVVSSTTHKTLRGPR-GGIIMTNDEELAKKINSAIFPGI--------------- 256 (417)
T ss_dssp EEECTTTHHHHHTTSSCC---CTTTCSEEEEESSTTTCSCS-CEEEEESCHHHHHHHHHHHTTTT---------------
T ss_pred EEECccchhhhhcccCCC---ccccceEEEeeCccccCCCC-eeEEEECCHHHHHHHhhhhCCcc---------------
Confidence 999998655443322111 12357999999999997776 48887775544332211000000
Q ss_pred ccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCCc
Q 038818 344 WQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKAN 421 (486)
Q Consensus 344 ~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~ 421 (486)
.++.. ....++..++.....+++.++.++..++++++.+.|.+ .++++..+ ...+.+.+.+.+...
T Consensus 257 ---~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~-------- 324 (417)
T 3n0l_A 257 ---QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDREF-------- 324 (417)
T ss_dssp ---CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTSSS--------
T ss_pred ---cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccCCC--------
Confidence 00101 11123344455444567888999999999999999988 58887652 334555555543210
Q ss_pred cchHHHHHHHHHHHHhcCcEEEeeee------ECCEeEEEEEecC---CCCcHHHHHHHHHHHHHHHHH
Q 038818 422 EGANELNRKLLESINASGQLYVSHGM------VAGIYFIRFAVGA---TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 422 ~~~~~~~~~l~~~l~~~g~~~~~~~~------~~~~~~lR~~~~~---~~tt~~did~~i~~l~~~~~~ 481 (486)
....+.+.+.+.|+.+..... ......+|+++.. ...++++|+++++.|++++++
T Consensus 325 -----~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 325 -----SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp -----CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 123455566667874322111 1123569998732 235688999999999988754
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-22 Score=196.93 Aligned_cols=323 Identities=12% Similarity=0.077 Sum_probs=212.9
Q ss_pred HHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 89 FLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 89 ~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
.+.+.+...+... ...|...+...++++.+.+++.+.+|.+.+. ....++|+||++++..++.+...
T Consensus 42 ~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~----~~~v~~~~g~~~a~~~~~~~l~~-------- 109 (376)
T 2dou_A 42 APLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP----RREALALIGSQEGLAHLLLALTE-------- 109 (376)
T ss_dssp HHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT----TTSEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CccEEEcCCcHHHHHHHHHHhcC--------
Confidence 3555665555332 2334333456788888888888888986210 01689999999999877776532
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.++..+++..|. +++.+|++ +.+.+|+++|++++++. +.+|+++.++|++|.+-
T Consensus 110 ---~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~--~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~ 175 (376)
T 2dou_A 110 ---PEDLLLLPEVAYPSYFGAARVASL---RTFLIPLR--EDGLADLKAVPEGVWRE------AKVLLLNYPNNPTGAVA 175 (376)
T ss_dssp ---TTCEEEEESSCCHHHHHHHHHTTC---EEEEECBC--TTSSBCGGGSCHHHHHH------EEEEEECSSCTTTCCCC
T ss_pred ---CCCEEEECCCCcHhHHHHHHHcCC---EEEEeeCC--CCCCCCHHHHHHhhccC------ceEEEECCCCCCcCccC
Confidence 566788888999999999999999 99999983 34679999999999754 34777788999999986
Q ss_pred C---chHHHHHHHHhCceEEeeccccchhccCccchhhhc--CCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 248 P---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID--GIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 248 p---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~--~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
| +++|+++|++||+++++|++|+.+.... .....+. +....+.+..+++|+++.| ..+|+++.+ ++......
T Consensus 176 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~ 253 (376)
T 2dou_A 176 DWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEALARLE 253 (376)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHHHHHHH
Confidence 6 6889999999999999999998754321 1111111 1123557778999999743 457887764 33332211
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
.....+. . ....+...++...+ +.+.+++..++..++++++.+.|+++ +++..+.
T Consensus 254 ~~~~~~~-------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~ 310 (376)
T 2dou_A 254 RVKGVID-------------------F--NQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPPR 310 (376)
T ss_dssp HHHHHHC-------------------C--CSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCC
T ss_pred HHHHhcc-------------------c--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCC
Confidence 1000000 0 01223333333333 34667888888899999999999887 7765333
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
....+.+.+.... + ..++.+.|.++|+.+..+..+. +..++|+++.. ++++|+++++.|++
T Consensus 311 ~~~~~~~~~~~~~------------~--~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 311 ATMYLWGRLPEGV------------D--DLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR---PLEELLEAAKRIRE 373 (376)
T ss_dssp BSSEEEEECCTTC------------C--HHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHH
T ss_pred eeEEEEEECCCCC------------C--HHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC---CHHHHHHHHHHHHH
Confidence 3234555554210 1 2356777777787544332222 25689999852 67899999999887
Q ss_pred HH
Q 038818 478 KL 479 (486)
Q Consensus 478 ~~ 479 (486)
++
T Consensus 374 ~l 375 (376)
T 2dou_A 374 AL 375 (376)
T ss_dssp TC
T ss_pred Hh
Confidence 53
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=202.60 Aligned_cols=310 Identities=10% Similarity=0.082 Sum_probs=201.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..+...++|+.+++++++++|.+.. .+++++||+|+..++.++.. +++.|+++..+|.+..
T Consensus 63 ~~~~~~~l~~~~r~~la~~~g~~~~--------~i~~~sGt~a~~~a~~~~~~-----------~gd~Vl~~~~~~~~~~ 123 (405)
T 2vi8_A 63 GCEYVDIVEELARERAKQLFGAEHA--------NVQPHSGAQANMAVYFTVLE-----------HGDTVLGMNLSHGGHL 123 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEECGGGTCCT
T ss_pred cchHHHHHHHHHHHHHHHHhCCCce--------EEEecCcHHHHHHHHHHhcC-----------CCCEEEEecccccchh
Confidence 3456678888899999999998743 34455669999888877632 5667888888887754
Q ss_pred H-H--HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 187 K-A--AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 187 ~-a--~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
. + +...|.+. +++.+++++ .++.+|+++|++++++.. +.+|+++ + +..|...|+++|.++|++||+++
T Consensus 124 ~~~~~~~~~g~~~-~~~~~~~~~-~~~~~d~~~l~~~i~~~~-----~~~v~~~-~-~~~~~~~~l~~i~~l~~~~~~~l 194 (405)
T 2vi8_A 124 THGSPVNFSGVQY-NFVAYGVDP-ETHVIDYDDVREKARLHR-----PKLIVAA-A-AAYPRIIDFAKFREIADEVGAYL 194 (405)
T ss_dssp TTTCTTSHHHHHS-EEEEECBCT-TTCSBCHHHHHHHHHHHC-----CSEEEEC-C-SSCCSCCCHHHHHHHHHHHTCEE
T ss_pred cccchhhhcccee-EEEeccccc-ccCCcCHHHHHHHHHhcC-----CeEEEEe-C-CCCCccCCHHHHHHHHHHcCCEE
Confidence 2 1 12223211 566777653 257899999999997631 2245442 2 34577789999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcC-CcccccCccCCCCCccCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALST-NPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~ 342 (486)
|+|++|+.+....+... ..+...|.++.++||++++|.| |+++++ ++... .+.. ...+..
T Consensus 195 i~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~-~l~~~~~~~~~------------- 255 (405)
T 2vi8_A 195 MVDMAHIAGLVAAGLHP---NPVPYAHFVTTTTHKTLRGPRG-GMILCQ-EQFAK-QIDKAIFPGIQ------------- 255 (405)
T ss_dssp EEECTTTHHHHHTTSSC---CSTTTCSEEEEESSSTTCCCSC-EEEEEC-HHHHH-HHHHHHTTTTC-------------
T ss_pred EEEccccccccccCcCC---CccccCCEEEEeccccCCCCCC-eEEEEc-HHHHH-HHHhhhccccc-------------
Confidence 99999985433222111 1133689999999999998877 888876 33332 2211 001100
Q ss_pred CccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCCCCCCCCC
Q 038818 343 DWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSASGLGDGKA 420 (486)
Q Consensus 343 ~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~ 420 (486)
++... ...++..++..+..++++++.++..++++++.+.|+++ ++++..++ ..+++.+.+....
T Consensus 256 -----~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-------- 321 (405)
T 2vi8_A 256 -----GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQ-------- 321 (405)
T ss_dssp -----SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT--------
T ss_pred -----CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCCC--------
Confidence 01011 11222344544444678899999999999999999988 89887543 4567777765311
Q ss_pred ccchHHHHHHHHHHHHhcCcEEEeee------eECCEeEEEEEecC---CCCcHHHHHHHHHHHHHHHHHH
Q 038818 421 NEGANELNRKLLESINASGQLYVSHG------MVAGIYFIRFAVGA---TLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 421 ~~~~~~~~~~l~~~l~~~g~~~~~~~------~~~~~~~lR~~~~~---~~tt~~did~~i~~l~~~~~~l 482 (486)
. ....+.+.|.++|+.+..+. ...+..++|+++.. +..+++|++++++.|+++++++
T Consensus 322 -~----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 322 -L----TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp -C----CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred -C----CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 0 02345666667787543321 01124579999853 2457899999999999987544
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=204.53 Aligned_cols=326 Identities=7% Similarity=-0.012 Sum_probs=215.5
Q ss_pred HHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 89 FLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 89 ~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
.+.+.+...+... ...|...+...++++.+.+|+.+.+|.+.+. ....++|+||++++..++.+...
T Consensus 64 ~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~----~~~v~~t~G~~~al~~~~~~l~~-------- 131 (404)
T 2o1b_A 64 GIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDK----EDEVCILYGTKNGLVAVPTCVIN-------- 131 (404)
T ss_dssp HHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCT----TTSEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----cccEEEcCCcHHHHHHHHHHhcC--------
Confidence 3455555555332 2234443467889999999999988976210 01689999999999887776532
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.++..+++..|. +++.+|.++ +.+.+|+++|++++++. +.+|+++.++|++|.+-
T Consensus 132 ---~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~-~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~ 198 (404)
T 2o1b_A 132 ---PGDYVLLPDPGYTDYLAGVLLADG---KPVPLNLEP-PHYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGSTA 198 (404)
T ss_dssp ---TTCEEEEEESCCSSHHHHHHHTTC---EEEEEECCT-TTCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCc-ccCcCCHHHHHHhhccC------ceEEEEcCCCCCCCccC
Confidence 556788888999999999999999 999999875 34678999999999754 34677788999999987
Q ss_pred C---chHHHHHHHHhCceEEeeccccchhccCccchhhhcC--CCCCCceeeccccccCCC-CcceEEEeeCchHHHHHh
Q 038818 248 P---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDG--IEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 248 p---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~--~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~ 321 (486)
| +++|+++|++||+++++|++|+.+.... ........ ....|.++.++||+++.| ..+|+++.+ ++......
T Consensus 199 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~ 276 (404)
T 2o1b_A 199 TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDMIQALK 276 (404)
T ss_dssp CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHHHHHHH
Confidence 5 7899999999999999999998754311 11111111 113467788999999744 457887764 33332211
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
.....+. . ....+..+++...+ +.+.++++.++..++++++.+.|+++ ++++.. +
T Consensus 277 ~~~~~~~-------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~ 333 (404)
T 2o1b_A 277 KYQTHTN-------------------A--GMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVH-A 333 (404)
T ss_dssp HHHHHHC-------------------C--CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC-C
T ss_pred HHHhhcc-------------------C--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecC-C
Confidence 1000000 0 11223333333333 35667888888889999999999887 787764 4
Q ss_pred CeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 400 NFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 400 ~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
..++ +.+.+.... + ..++.+.+. +.|+.+..+..+. +..++|+++.. ++++|+++++.|
T Consensus 334 ~~g~~~~~~~~~~~------------~--~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~~e~l~~~l~~l 396 (404)
T 2o1b_A 334 KGGIYVWLETPPGY------------D--SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL---DDQKLDEAAIRL 396 (404)
T ss_dssp CBSSEEEEECCTTC------------C--HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS---CTTHHHHHHHHH
T ss_pred CcceEEEEeCCCCC------------C--HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC---CHHHHHHHHHHH
Confidence 4444 455553210 1 234566655 4687544332222 25689999853 566999999999
Q ss_pred HHHHHH
Q 038818 476 QEKLDG 481 (486)
Q Consensus 476 ~~~~~~ 481 (486)
.+++++
T Consensus 397 ~~~l~~ 402 (404)
T 2o1b_A 397 TELAYL 402 (404)
T ss_dssp HGGGGG
T ss_pred HHHHHh
Confidence 887654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=192.94 Aligned_cols=288 Identities=11% Similarity=0.037 Sum_probs=200.8
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++++++++|.+.+ ..++|+|||+|+..++.++ +.|+++..+|.++..+++..|.
T Consensus 64 ~~l~~~la~~~~~~~~-------~i~~~~g~t~al~~~~~~~---------------d~vi~~~~~~~~~~~~~~~~g~- 120 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDI-------GIVLGNGASEIIELSISLF---------------EKILIIVPSYAEYEINAKKHGV- 120 (361)
T ss_dssp HHHHHHHHHHHTCCSC-------EEEEESSHHHHHHHHHTTC---------------SEEEEEESCCTHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCCcc-------eEEEcCCHHHHHHHHHHHc---------------CcEEEecCChHHHHHHHHHcCC-
Confidence 3455677777887655 6899999999987766544 3477888899999999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccch
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+++.+|++++ +.+++++|++++++ + .+|+++.++|++|.+-| +++|+++|++||+++++|++|+.+
T Consensus 121 --~~~~~~~~~~--~~~~~~~l~~~l~~-~------~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 189 (361)
T 3ftb_A 121 --SVVFSYLDEN--MCIDYEDIISKIDD-V------DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEF 189 (361)
T ss_dssp --EEEEEECCTT--SCCCHHHHHHHTTT-C------SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGG
T ss_pred --eEEEeecCcc--cCCCHHHHHHhccC-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhh
Confidence 9999999863 47888999998875 3 37888999999999976 667888888999999999999765
Q ss_pred hccCccchh-hhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACICPEFRH-FIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~~~~~~~-~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
... ..... ...+......+..+++|+++ ....+|++++.++............+
T Consensus 190 ~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~----------------------- 245 (361)
T 3ftb_A 190 TGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW----------------------- 245 (361)
T ss_dssp TCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT-----------------------
T ss_pred cCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC-----------------------
Confidence 542 11100 01111123355678999997 44567887766665543222111100
Q ss_pred CCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 351 RFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
....+..+++...+. .+++++..++..++++++.+.|+++|+++ +. ++..+.+.+.+.... .
T Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~ 309 (361)
T 3ftb_A 246 NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENIS---------------G 309 (361)
T ss_dssp CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSSC---------------H
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCCC---------------H
Confidence 113344444444442 45678888889999999999999998998 55 555667777765311 2
Q ss_pred HHHHHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.++.+.|.++|+.+..+..+. +.+++|+++. +++++++++++|+++.+.
T Consensus 310 ~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 310 EKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK----DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp HHHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHhc
Confidence 456777877887544333232 3578999974 666899999999988764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=202.09 Aligned_cols=342 Identities=12% Similarity=0.063 Sum_probs=219.4
Q ss_pred HHHHHHHhhcCCC--ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 89 FLGEMLSSGFNVV--GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 89 ~~~~~l~~~~n~~--~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
.+.+.+...+... ...|.......++++.+.+++.+.+|.+.+. ....++|+||++++..++.+...
T Consensus 45 ~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~----~~~i~~~~g~~~a~~~~~~~~~~------- 113 (422)
T 3fvs_A 45 FAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP----LRNVLVTVGGYGALFTAFQALVD------- 113 (422)
T ss_dssp HHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH----HHHEEEESHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC----CCcEEEECChHHHHHHHHHHHcC-------
Confidence 3444444444332 2345444456789999999999999875320 01689999999999888776533
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC----C------CCcccCHHHHHHHHHHHHHCCCccEEEEe
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK----S------SSFTLTPESLQAAIDLDIQAGLIPLFLCA 236 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~----~------~~~~~d~~~L~~~l~~~~~~g~~p~~vv~ 236 (486)
++..|+++..+|.++...++..|. +++.+|+++ + .++.+|+++|++++++. +.+|++
T Consensus 114 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~------~~~v~~ 180 (422)
T 3fvs_A 114 ----EGDEVIIIEPFFDCYEPMTMMAGG---RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALVL 180 (422)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT------EEEEEE
T ss_pred ----CCCEEEEcCCCchhhHHHHHHcCC---EEEEEecccccccccccccccCCCCCHHHHHhhcCCC------ceEEEE
Confidence 566788888999999999999999 999999875 1 25689999999988643 457888
Q ss_pred ecCCccccccC---CchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccC-CCCcceEEE
Q 038818 237 TVGTTAITTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFF-TTLDCCCLW 310 (486)
Q Consensus 237 ~~gtt~~G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~-~p~~~g~~~ 310 (486)
+.++|++|.+- ++++|+++|++||+++++|++|+.+.......... +......+.+..+++|+++ ....+|+++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~ 260 (422)
T 3fvs_A 181 NTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVL 260 (422)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEE
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEE
Confidence 89999999997 59999999999999999999997644321111111 1111133466778899997 445688887
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---------chHHHHHHHHHHHHHHH
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---------GVANLRNFLRSHVRMAQ 381 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---------g~~g~~~~~~~~~~~a~ 381 (486)
.+++ .............. ....+..+++...+ ..+.++++.++..++++
T Consensus 261 ~~~~-~~~~~~~~~~~~~~---------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (422)
T 3fvs_A 261 GPDH-IMKHLRTVHQNSVF---------------------HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRD 318 (422)
T ss_dssp CCHH-HHHHHHHHHHTTTC---------------------CCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHH
T ss_pred eCHH-HHHHHHHHHhhccC---------------------CCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHH
Confidence 7553 22211110000000 01223333333322 24567888899999999
Q ss_pred HHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeE-------CCEeE
Q 038818 382 LFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMV-------AGIYF 453 (486)
Q Consensus 382 ~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~-------~~~~~ 453 (486)
++.+.|+++ ++++..+.....+.+.+........+ ...........++.+.+. +.|+.+.++..+ .+.++
T Consensus 319 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~ 396 (422)
T 3fvs_A 319 HMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPD-LPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHY 396 (422)
T ss_dssp HHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCC-CCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSE
T ss_pred HHHHHHHHc-CCeecCCCeeeEEEEechhhcccccc-cccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCe
Confidence 999999998 88877555444555554321000000 000000000234455543 458754443333 24689
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+|+++.. ++++|+++++.|++++++
T Consensus 397 iRis~~~---~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 397 IRFCFVK---DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHHC
T ss_pred EEEEecC---CHHHHHHHHHHHHHHHhh
Confidence 9999853 888999999999988764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=198.76 Aligned_cols=309 Identities=14% Similarity=0.068 Sum_probs=197.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+ .+++++|||+|+..++.+.+-. ++..|+++..+|.+...+++..|+
T Consensus 43 ~l~~~la~~~~~~---------~~~~~~~gt~al~~~~~~~~~~----------~gd~Vl~~~~~~~~~~~~~~~~g~-- 101 (393)
T 1mdo_A 43 ELEAAFCRLTGNQ---------YAVAVSSATAGMHIALMALGIG----------EGDEVITPSMTWVSTLNMIVLLGA-- 101 (393)
T ss_dssp HHHHHHHHHHCCS---------EEEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCCC---------cEEEecChHHHHHHHHHHcCCC----------CCCEEEeCCCccHhHHHHHHHCCC--
Confidence 4445667777753 4789999999998887765211 567788999999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.+|++++ ++.+|+++|+++|++. +.+|+++ +++|.+.|+++|.++|+++|+++++|++|+.+..+.
T Consensus 102 -~~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~ 170 (393)
T 1mdo_A 102 -NPVMVDVDRD-TLMVTPEHIEAAITPQ------TKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYK 170 (393)
T ss_dssp -EEEEECBCTT-TCCBCHHHHHHHCCTT------EEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEET
T ss_pred -EEEEEeccCC-cCCCCHHHHHHhcCCC------ceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeEC
Confidence 9999999853 4789999999988642 3455554 479999999999999999999999999998544332
Q ss_pred ccchhhhcCCCCCCceeeccc--cccCCCCcceEEEeeCchHHHHHhcCCc-ccccCccCCCCCccCCCCcccc---CC-
Q 038818 277 PEFRHFIDGIEGADSFSLNAH--KWFFTTLDCCCLWVKNPNALIKALSTNP-EFLRNKASDSKQVVDYKDWQIT---LS- 349 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~h--K~l~~p~~~g~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~---~s- 349 (486)
. +.. +. .|.++.++| |+++++ .+|+++.++++.......... ....... ........+..+ .+
T Consensus 171 ~--~~~--~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 240 (393)
T 1mdo_A 171 G--RHI--GA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW---DRQSGGRAPQAEVLAPGY 240 (393)
T ss_dssp T--EET--TS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--------------CCEESSCCC
T ss_pred C--eec--CC--CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch---hhhcccccccccccccCc
Confidence 1 111 11 899999999 999764 467777665554332211110 0000000 000000001111 11
Q ss_pred -CCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC------CeeEEEEEeecCCCCCCCCCCcc
Q 038818 350 -RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR------NFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 350 -r~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
.+...+....++. ..+++++..++..++++++.+.|.+++ +++...+ ...++++.+.+.. .
T Consensus 241 ~~~~~~~~~a~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~---------~ 308 (393)
T 1mdo_A 241 KYNLPDLNAAIALA--QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEAR---------C 308 (393)
T ss_dssp BCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHH---------H
T ss_pred cCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccc---------c
Confidence 1223333333333 345677888888899999999999986 8875432 2235667664200 0
Q ss_pred chHHHHHHHHHHHHhcCcEEEeeeeE----------------C-----CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQLYVSHGMV----------------A-----GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~~~----------------~-----~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+....++.+.|.++|+.+...... . ...++|+++ .+.++++|+++++++|+++++.
T Consensus 309 --~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~-~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 309 --GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPL-FPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp --SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECC-CTTCCHHHHHHHHHHHHHHHC-
T ss_pred --ccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecC-CCCCCHHHHHHHHHHHHHHHhc
Confidence 001345677777778743221100 0 123799998 4678889999999999998754
Q ss_pred H
Q 038818 482 I 482 (486)
Q Consensus 482 l 482 (486)
.
T Consensus 386 ~ 386 (393)
T 1mdo_A 386 G 386 (393)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=199.83 Aligned_cols=338 Identities=12% Similarity=0.057 Sum_probs=214.2
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcC-CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC-CCeEEEecC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLK-LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI-SRLVVYGSD 179 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~-~~~~v~~s~ 179 (486)
...|..+.+..++++.+.+++++..| ++.+ ...+++|+|+++++..++.+.... |. +++.|+++.
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~-----~~~i~~t~G~~~ai~~~~~~l~~~--------gd~~~d~Vlv~~ 188 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDGGVPAD-----PDNIYLTTGASDGISTILKILVSG--------GGKSRTGVMIPI 188 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTTTCCCC-----GGGEEEESSHHHHHHHHHHHHCCC--------CGGGSEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCC-----cccEEEcCCHHHHHHHHHHHHcCC--------CCCCCCEEEEeC
Confidence 35677777778899999999999885 6432 127899999999998777655321 00 135888999
Q ss_pred CCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHH
Q 038818 180 QTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIA 256 (486)
Q Consensus 180 ~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~ 256 (486)
..|.++..+++.+|. +++.++++++++|.+|+++|+++|++... +..+.+|+++.++|+||.+ +++++|+++|
T Consensus 189 p~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la 264 (498)
T 3ihj_A 189 PQYPLYSAVISELDA---IQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFA 264 (498)
T ss_dssp SCCTHHHHHHHHTTC---EEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHcCC---EEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHH
Confidence 999999999999999 99999998766789999999999987532 2235678888999999999 4577899999
Q ss_pred HHhCceEEeeccccchhccCc----cchhhhcCC-----CCCCc-eeeccccccC--CCCcceEEEe--eCchHHHHHhc
Q 038818 257 KRYSIWVHVDAAYAGSACICP----EFRHFIDGI-----EGADS-FSLNAHKWFF--TTLDCCCLWV--KNPNALIKALS 322 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~----~~~~~~~~~-----~~aDs-i~~~~hK~l~--~p~~~g~~~~--~~~~~~~~~~~ 322 (486)
++||+++++|.+|+.+..... .+......+ ..... +..+++|.+. ....+|++.+ .++........
T Consensus 265 ~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~ 344 (498)
T 3ihj_A 265 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVK 344 (498)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHH
T ss_pred HHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHH
Confidence 999999999999976543211 111111111 01223 3457899994 4556777765 45444332111
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc------------hHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG------------VANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g------------~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
....+. + ...+..++....+. .+...++.++..++++++.+.|+++
T Consensus 345 ~~~~~~-------------------~---~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 402 (498)
T 3ihj_A 345 LLSVRL-------------------C---PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV 402 (498)
T ss_dssp HHHHSC-------------------C---CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhccC-------------------C---CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 100010 0 12222233322232 1223456677888999999999999
Q ss_pred CCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHH-HHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcH
Q 038818 391 NRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRK-LLESINASGQLYVSHGMV---AGIYFIRFAVGATLTED 465 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~~~tt~ 465 (486)
|++++. ++..+++.| ++..+.. ............ ... +.+.+.+.|+.+..+..+ .+..++|+++. .++
T Consensus 403 ~g~~~~-~p~gg~~~~~~l~~p~~-~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~---~~~ 476 (498)
T 3ihj_A 403 PGIHCN-PLQGAMYAFPRIFIPAK-AVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL---PPV 476 (498)
T ss_dssp TTEECC-CCCBSSEECCEECCCHH-HHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC---SCH
T ss_pred CCcEec-CCCeEEEEEEeccCchh-hhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC---CCH
Confidence 999875 556666665 4432100 000000000000 111 344455678865554333 34668999983 578
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038818 466 RHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 466 ~did~~i~~l~~~~~~l~~ 484 (486)
++++++++.|.++.+++.+
T Consensus 477 e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 477 EKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=192.92 Aligned_cols=331 Identities=11% Similarity=0.010 Sum_probs=205.1
Q ss_pred CCCcceecCCCCCHHHHHHHHHHhhc-CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 73 SPYYFAYFPSSGSIAGFLGEMLSSGF-NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~l~~~~-n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
+..|+|.-+. +..+..+.+++..+. ......|..++...+++ +++++++|.+ ..++++|||+|+.
T Consensus 11 ~~~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~----~~la~~~~~~---------~~i~~~~G~~a~~ 76 (357)
T 3lws_A 11 QTTGQISGHG-KRNVGVLKTAFAAVADEMASDQYGTGAIIEPFE----QKFADVLGMD---------DAVFFPSGTMAQQ 76 (357)
T ss_dssp TCSEESSBSS-CCBHHHHHHHHTTSCTTCBCEETTEETTHHHHH----HHHHHHHTCS---------EEEEESCHHHHHH
T ss_pred hhcccccCCC-CCCHHHHHHHHHHhhcccCcccccCChHHHHHH----HHHHHHhCCC---------cEEEecCcHHHHH
Confidence 3457776554 445555666555422 11123444445544444 5678888874 3467788999998
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH---HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK---AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~---a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
.++.+....- ++.+|+++...|++... .+...|+ +++.+|.+ ++.+|+++|+++.+
T Consensus 77 ~al~~~~~~g---------d~~~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~~~------ 135 (357)
T 3lws_A 77 VALRIWSDET---------DNRTVAYHPLCHLEIHEQDGLKELHPI---ETILVGAA---DRLMTLDEIKALPD------ 135 (357)
T ss_dssp HHHHHHHHHH---------TCCEEEECTTCHHHHSSTTHHHHHSSC---EEEECSCT---TSCCCHHHHHTCCS------
T ss_pred HHHHHHhhcC---------CCcEEEecccceeeeeccchhhhccCc---EEEEecCC---CCCcCHHHHhcCcC------
Confidence 8887766531 22378888888887655 3556677 77777743 46899999998721
Q ss_pred CccEEEEeecCCccc-cccCC---chHHHHHHHHhCceEEeeccccchhc--cCccchhhhcCCCCCCceeeccccccCC
Q 038818 229 LIPLFLCATVGTTAI-TTVDP---LGPLCDIAKRYSIWVHVDAAYAGSAC--ICPEFRHFIDGIEGADSFSLNAHKWFFT 302 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~-G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~--~~~~~~~~~~~~~~aDsi~~~~hK~l~~ 302 (486)
+.+|+++.++|++ |.+.| +++|+++|++||+++|+|+||..... ......... ..+|.++.++||++++
T Consensus 136 --~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~ 210 (357)
T 3lws_A 136 --IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGG 210 (357)
T ss_dssp --CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCC
T ss_pred --cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCC
Confidence 3368888899888 88765 89999999999999999999862211 111111111 3578899999999988
Q ss_pred CCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 038818 303 TLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQL 382 (486)
Q Consensus 303 p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~ 382 (486)
|.| |+++. +++.......... ..... .+....+. ..++..+ +...+.+++..+++++
T Consensus 211 ~~g-g~~~~-~~~~~~~~~~~~~-~~~~~-----------------~~~~~~~~-~~~~~~l--~~~~~~~~~~~~~~~~ 267 (357)
T 3lws_A 211 IAG-AILAG-PAAFCQTARIWKR-RYGGD-----------------LISLYPYI-VSADYYY--ELRKDRMGQYYEQAKQ 267 (357)
T ss_dssp SSC-EEEEE-CHHHHHHHHHHHH-HTTCC-----------------CSCCHHHH-HHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred Cce-EEEEc-CHHHHHHHHHHHH-HhcCC-----------------cccchHHH-HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 876 66554 4444332211100 00000 00011111 1111112 1123344556778899
Q ss_pred HHHHHhCCCCeEEe-cCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-CCEeEEEEEecC
Q 038818 383 FQELVGGDNRFEIV-APRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-AGIYFIRFAVGA 460 (486)
Q Consensus 383 l~~~L~~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~lR~~~~~ 460 (486)
+.+.|+++|++++. .++..+.+.+.+.... .....++.+.|.++|+.+..+... .+..++|+++..
T Consensus 268 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~ 335 (357)
T 3lws_A 268 LAEQFNALPGVHTTPEVPVSNMFHLHFDGQA------------ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGD 335 (357)
T ss_dssp HHHHHHTSTTEEEESSSCSSSEEEEEEESCH------------HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCT
T ss_pred HHHHHHhCCCCeeccCCCcceEEEEEecCCh------------HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecc
Confidence 99999999999984 5667788888776421 122356677788888753332211 457799999864
Q ss_pred CC--CcHHHHHHHHHHHHHH
Q 038818 461 TL--TEDRHVIAAWKVVQEK 478 (486)
Q Consensus 461 ~~--tt~~did~~i~~l~~~ 478 (486)
.+ .+++++++.++.|.+.
T Consensus 336 ~~~~~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 336 AYGELDQQTRDAGFARLRQA 355 (357)
T ss_dssp TGGGSCHHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHHh
Confidence 43 5777888888887765
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=199.12 Aligned_cols=288 Identities=18% Similarity=0.201 Sum_probs=193.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH-
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA- 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~- 189 (486)
......++++++++++|.+ ..+++++|++|+..++.+... +++.|+++...|.++...+
T Consensus 62 ~~~~~~~l~~~la~~~g~~---------~~i~~~sG~~a~~~~l~~~~~-----------~gd~vi~~~~~~~~~~~~~~ 121 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGE---------AGLATASGISAITTTLLTLCQ-----------QGDHIVSASAIYGCTHAFLS 121 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCCcccHHHHHH
Confidence 3455667888999999875 246777788999888776632 5677888999999987776
Q ss_pred ---HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 190 ---QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 190 ---~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
+..|+ +++.+|.+ |+++|+++++++ +.+|+++.++|++|.+.|+++|+++|++||+++|+|
T Consensus 122 ~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 185 (398)
T 2rfv_A 122 HSMPKFGI---NVRFVDAA-------KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD 185 (398)
T ss_dssp THHHHTTC---EEEEECTT-------SHHHHHHHCCTT------EEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHcCC---EEEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 77888 88888763 899999888643 457888999999999999999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
++|+.+....+ . . .++|.++.++||++++|.+ +|+++.+++. +...+.. +...
T Consensus 186 e~~~~~~~~~~-~-~-----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~-~~~~~~~---~~~~-------------- 240 (398)
T 2rfv_A 186 NTFMSPYCQQP-L-Q-----LGADIVVHSVTKYINGHGDVIGGIIVGKQEF-IDQARFV---GLKD-------------- 240 (398)
T ss_dssp CTTTCTTTCCG-G-G-----GTCSEEEEETTTTTTCSSCCCCEEEEECHHH-HHHHHHT---HHHH--------------
T ss_pred CCCcccccCCc-h-h-----hCCcEEEEeCcccccCCCCceEEEEEECHHH-HHHHHHH---HHHh--------------
Confidence 99986554322 1 1 1689999999999988876 5888776542 2211111 1100
Q ss_pred cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE--------------ecC---CCeeEEEEE
Q 038818 345 QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI--------------VAP---RNFAVVCFR 407 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~--------------~~~---~~~~~v~f~ 407 (486)
.. +-....+..|+.++.+ +.+....++..++++++.+.|++.+.++- ..+ ...++++|.
T Consensus 241 -~~-~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 316 (398)
T 2rfv_A 241 -IT-GGCMSPFNAWLTLRGV--KTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 316 (398)
T ss_dssp -TT-CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred -CC-CCCCCHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 00 0012345556665554 33455566677788888888877644322 211 246788887
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee----------------------ECC--EeEEEEEecCCCC
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM----------------------VAG--IYFIRFAVGATLT 463 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----------------------~~~--~~~lR~~~~~~~t 463 (486)
+.+. .....++.+.+...|+. ++.+. ..+ .+.+|+++. ..+
T Consensus 317 ~~~~-------------~~~~~~l~~~~~~~~i~-~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~ 381 (398)
T 2rfv_A 317 IAGG-------------LEAGRRMINSVELCLLA-VSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LED 381 (398)
T ss_dssp ETTH-------------HHHHHHHHTTCSSSEEC-SCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SSC
T ss_pred EcCC-------------HHHHHHHHHhCCcceec-cCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CCC
Confidence 6531 12233444444333321 11110 012 478999996 578
Q ss_pred cHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEK 478 (486)
Q Consensus 464 t~~did~~i~~l~~~ 478 (486)
++++|++++++|+++
T Consensus 382 ~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 382 PEDIINDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 888999999998764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=207.36 Aligned_cols=342 Identities=12% Similarity=0.060 Sum_probs=219.7
Q ss_pred HHHHHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
+..+.+.+...+.. ....|....+..++++.+.+++.+.+|.+.+. ..+++|+||++|+..++.+..+
T Consensus 72 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~-----~~v~~t~G~~~al~~~~~~l~~------ 140 (447)
T 3b46_A 72 PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA-----ENVTVTTGANEGILSCLMGLLN------ 140 (447)
T ss_dssp CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG-----GGEEEESHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-----hhEEEeCCHHHHHHHHHHHHcC------
Confidence 34556666666654 23355544456889999999999988864321 2689999999999888877643
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCC----------CcccCHHHHHHHHHHHHHCCCccEEEE
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSS----------SFTLTPESLQAAIDLDIQAGLIPLFLC 235 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~----------~~~~d~~~L~~~l~~~~~~g~~p~~vv 235 (486)
+++.|+++...|.++..+++..|. +++.+|+++.+ ++.+|+++|+++|++. +.+|+
T Consensus 141 -----~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~ 206 (447)
T 3b46_A 141 -----AGDEVIVFEPFFDQYIPNIELCGG---KVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK------TKAVI 206 (447)
T ss_dssp -----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT------EEEEE
T ss_pred -----CCCEEEEeCCCchhHHHHHHHcCC---EEEEEeCCCccccccccccccCcccCHHHHHHhhccC------CeEEE
Confidence 567788888999999999999999 99999987532 4689999999988632 45778
Q ss_pred eecCCcccccc---CCchHHHHHHHHhCceEEeeccccchhccCccchhh--h-cCCCCCCceeeccccccCC-CCcceE
Q 038818 236 ATVGTTAITTV---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--I-DGIEGADSFSLNAHKWFFT-TLDCCC 308 (486)
Q Consensus 236 ~~~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~-~~~~~aDsi~~~~hK~l~~-p~~~g~ 308 (486)
++.++|++|.+ +++++|+++|++||+++++|++|+.+.... ..... + .+....|.+..++||+++. ...+|+
T Consensus 207 l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~ 285 (447)
T 3b46_A 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGW 285 (447)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEE
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEE
Confidence 88999999998 569999999999999999999998644311 11111 1 1112578889999999973 445898
Q ss_pred EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHH
Q 038818 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELV 387 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L 387 (486)
++.++++.... +.....+.. . ++-.....++..++.... .+.++++.++..++++++.+.|
T Consensus 286 ~~~~~~~l~~~-l~~~~~~~~----------------~-~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L 347 (447)
T 3b46_A 286 VLSLNAELLSY-AAKAHTRIC----------------F-ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIF 347 (447)
T ss_dssp EECSCHHHHHH-HHHHHHHHT----------------S-SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHH-HHHHHhhcc----------------C-CCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88844444332 111000000 0 000011112222333221 3457778888899999999999
Q ss_pred hCCCCeEEecCCCeeEEEEEeecCCCCCCCCCC--cc-chHHHHHHHHHHHH-hcCcEEEeeeeEC-------CEeEEEE
Q 038818 388 GGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKA--NE-GANELNRKLLESIN-ASGQLYVSHGMVA-------GIYFIRF 456 (486)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~l~-~~g~~~~~~~~~~-------~~~~lR~ 456 (486)
+++ ++++..+.....+.+.+..... +++.. .. .......++.+.+. +.|+.+..+..+. +..++|+
T Consensus 348 ~~~-g~~~~~~~~g~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRl 424 (447)
T 3b46_A 348 DEL-GLPYTAPEGTYFVLVDFSKVKI--PEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRF 424 (447)
T ss_dssp HHH-TCCEECCSBSSEEEEECTTCCC--CTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEE
T ss_pred HHC-CCeecCCCeeEEEEEecccccC--ccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEE
Confidence 887 7877644434445555542100 00000 00 00011245666665 4687544433221 2568999
Q ss_pred EecCCCCcHHHHHHHHHHHHHH
Q 038818 457 AVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 457 ~~~~~~tt~~did~~i~~l~~~ 478 (486)
++. .++++|+++++.|+++
T Consensus 425 s~~---~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 425 AVC---KDDAYLENAVERLKLL 443 (447)
T ss_dssp ECC---SCHHHHHHHHHHGGGG
T ss_pred EEe---CCHHHHHHHHHHHHHH
Confidence 985 2678999999988763
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=196.30 Aligned_cols=284 Identities=14% Similarity=0.080 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH--
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA-- 189 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~-- 189 (486)
.....++++.+++++|.+ ..++++|||+|+..++.++.. ++..|+++...|.+....+
T Consensus 65 ~~~~~~l~~~la~~~g~~---------~~~~~~sGt~A~~~al~~~~~-----------~gd~Vi~~~~~y~~~~~~~~~ 124 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAA---------FGRAFSSGMAAADCALRAMLR-----------PGDHVVIPDDAYGGTFRLIDK 124 (392)
T ss_dssp CHHHHHHHHHHHHHTTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCcchHHHHHHH
Confidence 344456667889998875 468899999999888776532 5667888999998876665
Q ss_pred --HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 190 --QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 190 --~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
+..|+ +++.+|++ |+++|+++|+++ +.+|+++.++|++|.+.|+++|+++|++||+++|+|+
T Consensus 125 ~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~ 188 (392)
T 3qhx_A 125 VFTGWNV---EYTPVALA-------DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDN 188 (392)
T ss_dssp TGGGGTC---EEEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHhcCc---EEEEeCCC-------CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEEC
Confidence 55677 88888764 899999998753 4578899999999999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
+|+.+....+ .. .++|.++.++||+++++.. +|+++.+++......... .
T Consensus 189 ~~~~~~~~~~-~~------~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~----~----------------- 240 (392)
T 3qhx_A 189 TFASPALQQP-LS------LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFL----Q----------------- 240 (392)
T ss_dssp TTTCTTTCCG-GG------GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH----H-----------------
T ss_pred CCcccccCCh-HH------hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHH----H-----------------
Confidence 9976543222 11 1689999999999997743 788877765543321110 0
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC-----------------eeEEEEEe
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN-----------------FAVVCFRV 408 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-----------------~~~v~f~~ 408 (486)
...+.....+..|+.++.+ +.+..++++..++++++.+.|+++|.+..+..|. .++++|.+
T Consensus 241 ~~~g~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l 318 (392)
T 3qhx_A 241 NGAGAVPGPFDAYLTMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRM 318 (392)
T ss_dssp HHHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEe
Confidence 0011223456667666644 4566778888999999999999998876543221 45788888
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE---------EEeeeeE-----------CCEeEEEEEecCCCCcHHHH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQL---------YVSHGMV-----------AGIYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---------~~~~~~~-----------~~~~~lR~~~~~~~tt~~di 468 (486)
.+. ....+++.+.+...++. ...+... -..+.+|+|++ ..+++++|
T Consensus 319 ~~~-------------~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e~~~~~i 384 (392)
T 3qhx_A 319 RAG-------------RTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVG-IEDVADLL 384 (392)
T ss_dssp TTC-------------HHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECC-SSCHHHHH
T ss_pred CCc-------------HHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEec-cCCHHHHH
Confidence 642 23345666655433321 1111100 12457999995 45666677
Q ss_pred HHHHHHH
Q 038818 469 IAAWKVV 475 (486)
Q Consensus 469 d~~i~~l 475 (486)
+.+.++|
T Consensus 385 ~~l~~al 391 (392)
T 3qhx_A 385 DDLKQAL 391 (392)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776655
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=194.42 Aligned_cols=286 Identities=14% Similarity=0.139 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----H
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK----A 188 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~----a 188 (486)
....++++.+++++|.+ ..++++||++|+..++.+... +++.|+++...|.+... .
T Consensus 62 ~~~~~l~~~ia~~~g~~---------~~i~~~~g~~ai~~~~~~l~~-----------~gd~Vl~~~~~y~~~~~~~~~~ 121 (404)
T 1e5e_A 62 PTVSNLEGKIAFLEKTE---------ACVATSSGMGAIAATVLTILK-----------AGDHLISDECLYGCTHALFEHA 121 (404)
T ss_dssp HHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHhCCC---------cEEEeCChHHHHHHHHHHHhC-----------CCCEEEEeCCCchhHHHHHHHH
Confidence 33445667778888874 357888889988877765532 56778889999998877 7
Q ss_pred HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH-hCceEEeec
Q 038818 189 AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR-YSIWVHVDA 267 (486)
Q Consensus 189 ~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~-~g~~lhvD~ 267 (486)
++..|+ +++.+|.+ |+++|+++|++. +.+|+++.++|++|.+.|+++|+++|++ +|+++++|+
T Consensus 122 ~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De 185 (404)
T 1e5e_A 122 LTKFGI---QVDFINTA-------IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN 185 (404)
T ss_dssp HHHTTC---EEEEECTT-------STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEEC
T ss_pred HHHcCC---EEEEECCC-------CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEEC
Confidence 788899 89888864 778899888643 4578899999999999999999999999 999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
+|+.+....+ .. -++|.++.++||++++|.+ +|+++.+++. +.+.+.....+..
T Consensus 186 ~~~~~~~~~~-~~------~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~-~~~~l~~~~~~~~---------------- 241 (404)
T 1e5e_A 186 TFCSPMITNP-VD------FGVDVVVHSATKYINGHTDVVAGLICGKADL-LQQIRMVGIKDIT---------------- 241 (404)
T ss_dssp TTTCTTTCCG-GG------GTCSEEEEETTTTTTCSSCCCCEEEEECHHH-HHHHHHTCCCCCC----------------
T ss_pred CCchhhhCCc-cc------cCCEEEEEcCccccCCCCCCeEEEEEECHHH-HHHHHHHHHHhCC----------------
Confidence 9987654322 11 1689999999999998876 6888876543 2312221111100
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecC------------C----CeeEEEEEe
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAP------------R----NFAVVCFRV 408 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~------------~----~~~~v~f~~ 408 (486)
+.....+..|++++.+ +.+..+.++..++++.+.+.|++.+.+. +..+ + ..++++|.+
T Consensus 242 ---g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~ 316 (404)
T 1e5e_A 242 ---GSVISPHDAWLITRGL--STLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFIL 316 (404)
T ss_dssp ---CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEE
T ss_pred ---CCCCCHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEe
Confidence 0112345566666655 3345667777888888888888776553 2211 1 267888866
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-------------------------CC--EeEEEEEecCC
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-------------------------AG--IYFIRFAVGAT 461 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------------------------~~--~~~lR~~~~~~ 461 (486)
.. . ...+.+.+.+.|++ +.+..+ .| .+++|+++..
T Consensus 317 ~~--------------~--~~~~~~~l~~~~i~-~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~- 378 (404)
T 1e5e_A 317 KS--------------G--FEGAKKLLDNLKLI-TLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI- 378 (404)
T ss_dssp TT--------------H--HHHHHHHHHTCSSS-EESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS-
T ss_pred CC--------------C--HHHHHHHHHhCCCc-eeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC-
Confidence 42 1 12233344455652 222111 12 4689999853
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 462 LTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
++++++++.|+++++.++++
T Consensus 379 ----e~~~~li~~l~~al~~~~~~ 398 (404)
T 1e5e_A 379 ----EDADELIADFKQGLDALLRS 398 (404)
T ss_dssp ----SCHHHHHHHHHHHHHHHHCC
T ss_pred ----CCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999887764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=194.22 Aligned_cols=318 Identities=15% Similarity=0.062 Sum_probs=199.5
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+ .+++++|||+|+..++.+.+.. ++..|+++..+|.++..+++..|+
T Consensus 36 ~l~~~la~~~~~~---------~v~~~~ggt~al~~~~~~l~~~----------~gd~Vl~~~~~~~~~~~~~~~~g~-- 94 (394)
T 1o69_A 36 RFEQSVKDYSKSE---------NALALNSATAALHLALRVAGVK----------QDDIVLASSFTFIASVAPICYLKA-- 94 (394)
T ss_dssp HHHHHHHHHHCCS---------EEEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCGGGTHHHHHTTC--
T ss_pred HHHHHHHHHhCCC---------cEEEeCCHHHHHHHHHHHcCCC----------CCCEEEECCCccHHHHHHHHHcCC--
Confidence 3445566777752 5899999999998887775211 567788999999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.+|+++ ++.+|+++|+++|++.. ..+.+|+++. ++|...|+++|.++|+++|+++|+|+||+.+..+.
T Consensus 95 -~~~~v~~~~--~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~ 165 (394)
T 1o69_A 95 -KPVFIDCDE--TYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYK 165 (394)
T ss_dssp -EEEEECBCT--TSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred -EEEEEEeCC--CCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeC
Confidence 999999973 67999999999997521 0133566654 78999999999999999999999999998433332
Q ss_pred ccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchH
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALK 356 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~ 356 (486)
.. . ...+..+|.++++.||.++ |.++|+++++++............+.... .... ..+.+.++....
T Consensus 166 ~~--~-~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~----~~~~g~~~~~~~ 232 (394)
T 1o69_A 166 NK--A-LGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENC-----LHYE----HLDYGYNYRLSN 232 (394)
T ss_dssp TE--E-TTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSS-----SSCC----CSSCCCBCBCCH
T ss_pred Cc--c-cccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccC-----cccc----ccccCcccCcCH
Confidence 21 1 1112358899999999876 56799999876654433221111111000 0000 111222232322
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----CeeEEEEEeecCC--CCCCC----C-CCccch
Q 038818 357 LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----NFAVVCFRVLPSA--SGLGD----G-KANEGA 424 (486)
Q Consensus 357 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----~~~~v~f~~~~~~--~~~~~----~-~~~~~~ 424 (486)
+.+++.....+.+++.+++..++++++.+.|+++ +++..++ .+.+++|.+.+.. .+... . ......
T Consensus 233 ~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (394)
T 1o69_A 233 VLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITL 310 (394)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhcccccccccccccccccc
Confidence 2332221123557788899999999999999886 6665432 2225677765310 00000 0 000000
Q ss_pred HHHHHHHHHHHHhcCcEEEeee-------eECC----E---------eEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 425 NELNRKLLESINASGQLYVSHG-------MVAG----I---------YFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 425 ~~~~~~l~~~l~~~g~~~~~~~-------~~~~----~---------~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.....+.+.|.++|+.+-... .+.. . ..+|+.. ++.+|++|||+++++|+++.+
T Consensus 311 ~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 311 HPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPS-GTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp CHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccC-CCCCCHHHHHHHHHHHHHHHh
Confidence 1123467777877887432210 1111 0 3455555 688999999999999998753
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-21 Score=191.29 Aligned_cols=317 Identities=9% Similarity=0.001 Sum_probs=209.5
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+ .....|.......++++++.+|+.+.+|.+.. ....++|+|||+++..++.+...
T Consensus 39 ~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~-----~~~i~~t~g~~~al~~~~~~~~~-------- 104 (376)
T 3ezs_A 39 KFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELK-----ENELISTLGSREVLFNFPSFVLF-------- 104 (376)
T ss_dssp HHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC-----GGGEEEESSSHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----HHHEEECcCcHHHHHHHHHHHcC--------
Confidence 44556666555 22334444445678999999999999998421 12789999999999888777643
Q ss_pred cCCC--CeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 168 ENIS--RLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 168 ~~~~--~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+ ++.|+++..+|.++...++..|. +++.+|+++++ .+++ +|++++.+.+ .+|+++.++|++|.
T Consensus 105 ---~~~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~--~~~~-~l~~~~~~~~------~~v~~~~p~nptG~ 169 (376)
T 3ezs_A 105 ---DYQNPTIAYPNPFYQIYEGAAKFIKA---KSLLMPLTKEN--DFTP-SLNEKELQEV------DLVILNSPNNPTGR 169 (376)
T ss_dssp ---TCSSCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGG--TSCC-CCCHHHHHHC------SEEEECSSCTTTCC
T ss_pred ---CCCCCEEEEecCCcHhHHHHHHHcCC---EEEEcccCCCC--Ccch-hHHhhhccCC------CEEEEcCCCCCcCC
Confidence 5 67888899999999999999999 99999998632 4555 7777777643 36777899999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcC-------CCCCCceeeccccccC-CCCcceEEEeeCc
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDG-------IEGADSFSLNAHKWFF-TTLDCCCLWVKNP 314 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~-------~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~ 314 (486)
+-| +++|+++|++||+++++|++|+.+.... .....+.. ....+.+..+++|+++ .+..+|+++.+ +
T Consensus 170 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~ 247 (376)
T 3ezs_A 170 TLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGD-S 247 (376)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEEC-H
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeC-H
Confidence 976 6777788999999999999998754322 11111110 1256678889999996 55567887764 3
Q ss_pred hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 038818 315 NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRF 393 (486)
Q Consensus 315 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 393 (486)
+... .+.....+. +.....+..+++...+ ..+.+++..++..++.+++.+.|+ ++
T Consensus 248 ~~~~-~~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~ 303 (376)
T 3ezs_A 248 RLLE-KYKAFRAYL--------------------GYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NT 303 (376)
T ss_dssp HHHH-HHHHHHTTT--------------------CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TC
T ss_pred HHHH-HHHHHHhhh--------------------cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 3332 221100000 0011223333333333 234577888888889999999987 44
Q ss_pred EEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC----CEeEEEEEecCCCCcHHHH
Q 038818 394 EIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA----GIYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 394 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~----~~~~lR~~~~~~~tt~~di 468 (486)
. .+.....+.+.+. . ...+.+.|.+ .|+.+.++..+. +..++|++++. ++++|
T Consensus 304 ~--~~~~~~~~~~~~~-~----------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~---~~~~i 361 (376)
T 3ezs_A 304 L--IYPYSFYVYLPVQ-N----------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY---DTPLL 361 (376)
T ss_dssp C--CCSBSSEEEEECS-C----------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS---CHHHH
T ss_pred C--CCCcceEEEEECC-C----------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC---CHHHH
Confidence 4 2333344444543 1 2345666665 688544433222 45789999852 78899
Q ss_pred HHHHHHHHHHHHH
Q 038818 469 IAAWKVVQEKLDG 481 (486)
Q Consensus 469 d~~i~~l~~~~~~ 481 (486)
+++++.|++++++
T Consensus 362 ~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 362 EKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-22 Score=195.45 Aligned_cols=306 Identities=11% Similarity=0.023 Sum_probs=194.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH--
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL-- 185 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~-- 185 (486)
++...++.+++++++++++|.+++. ...++|+|||+++..++.+... +++.|++....|++.
T Consensus 44 ~~~~~~~~~~~~~~la~~~g~~~~~-----~~i~~t~g~t~a~~~~~~~l~~-----------~gd~vl~~~~~~~~~~~ 107 (362)
T 2c0r_A 44 GAVYEAVHNEAQARLLALLGNPTGY-----KVLFIQGGASTQFAMIPMNFLK-----------EGQTANYVMTGSWASKA 107 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCSSE-----EEEEESSHHHHHHHHHHHHHCC-----------TTCEEEEEECSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCc-----EEEEECCCchHHHHHHHHhcCC-----------CCCeEEEEecCcHhHHH
Confidence 5556677788999999999997531 0246789999999877766532 455565555666663
Q ss_pred HHHHHHcCCCCCCeEEEecCCC--CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc-cCCchHHHHHHHHhCce
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKS--SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT-VDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~--~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~-idpl~~I~~i~~~~g~~ 262 (486)
...++..| +++.+|++.+ ....+|.++++ +++ .+.+|++++++|++|. +.|+++| +|++
T Consensus 108 ~~~~~~~g----~~~~v~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~n~tG~~~~~l~~i------~~~~ 169 (362)
T 2c0r_A 108 LKEAKLIG----DTHVAASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNETIEGAQFKAFPDT------GSVP 169 (362)
T ss_dssp HHHHHHHS----CEEEEEECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEETTTTEECSSCCCC------TTSC
T ss_pred HHHHHHhC----CeEEEecccccccccCCCHHHcc--cCC------CcCEEEEeCCcCccceeccccccc------CCCE
Confidence 35555554 4777887621 11235666553 332 2568899999999999 4899988 8999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
+|+|++|+.+....+ +...|.++.++||+++ |.|+|+++++++.. . .+....+++..... .. .
T Consensus 170 vivD~a~~~~~~~~~--------~~~~d~~~~s~~K~~g-~~G~G~l~~~~~~~-~-~l~~~~~~~~~~~~-----~~-~ 232 (362)
T 2c0r_A 170 LIGDMSSDILSRPFD--------LNQFGLVYAGAQKNLG-PSGVTVVIVREDLV-A-ESPKHLPTMLRYDT-----YV-K 232 (362)
T ss_dssp EEEECTTTTTSSCCC--------GGGCSEEEEETTTTTC-CSSCEEEEEEGGGS-S-SCCTTSCGGGCHHH-----HH-H
T ss_pred EEEEChhhccCCccc--------hhHCcEEEEecccccc-CcCcEEEEEcHHHH-h-hccccCchHHhHHH-----Hh-h
Confidence 999999976543221 2234999999999996 77899999876522 1 11111111110000 00 0
Q ss_pred CccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCCe-EEecCC---CeeEEEEEeecCCCCCC
Q 038818 343 DWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDNRF-EIVAPR---NFAVVCFRVLPSASGLG 416 (486)
Q Consensus 343 ~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~---~~~~v~f~~~~~~~~~~ 416 (486)
.....++-. +...++..+++.+... +++++.++..++++++.+.|++++++ ++..++ ...+++|.+..
T Consensus 233 ~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 306 (362)
T 2c0r_A 233 NNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS------ 306 (362)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC------
T ss_pred ccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC------
Confidence 000001111 1223444555554443 78899999999999999999998546 775432 23567776642
Q ss_pred CCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 417 DGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+....++.+.|.++|++...+.. ..+.+|+++. ..++++|++++++.|++++++
T Consensus 307 --------~~~~~~~~~~L~~~gi~~~~g~~--~~~~iRis~~-~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 307 --------EELEKEFVKASEQEGFVGLKGHR--SVGGLRASIY-NAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp --------HHHHHHHHHHHHHTTEESCBCCT--TTCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred --------cchHHHHHHHHHHCCCeeccCCC--CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHh
Confidence 22345677778788874322211 1346999996 466788999999999998764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=201.37 Aligned_cols=307 Identities=11% Similarity=0.053 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH---
Q 038818 110 AATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ--- 186 (486)
Q Consensus 110 ~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--- 186 (486)
....++..+++++++++|.+.. -+++++||+|+..++.+... +++.|+++..+|.+..
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~--------~v~~~sGs~a~~~a~~~~~~-----------~gd~v~~~~~~~~~~~~~~ 133 (420)
T 3gbx_A 73 YVDVVEQLAIDRAKELFGADYA--------NVQPHSGSQANFAVYTALLQ-----------PGDTVLGMNLAQGGHLTHG 133 (420)
T ss_dssp -CHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEEEEC--------
T ss_pred HHHHHHHHHHHHHHHHhCCCCc--------eeEecCcHHHHHHHHHHhcC-----------CCCEEEecchhhcceeccc
Confidence 3456777788999999998653 24455668999887766543 5677888888887743
Q ss_pred HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
......|.+. ..+.++.+ .++.+|+++|++++++.. +.+|+++.+++ |...|+++|+++|++||+++++|
T Consensus 134 ~~~~~~g~~~-~~~~~~~~--~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~D 203 (420)
T 3gbx_A 134 SPVNFSGKLY-NIVPYGID--ESGKIDYDEMAKLAKEHK-----PKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVD 203 (420)
T ss_dssp ----CHHHHS-EEEEEEEC--TTCSCCHHHHHHHHHHHC-----CSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhcccce-eEEeccCC--ccCCcCHHHHHHHHHhcC-----CeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEE
Confidence 2222333300 34455555 357899999999998752 33666666554 56889999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc--hHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP--NALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
++|+.+......+.. .+..+|.++.++||++++|.| |+++.++. .... .+. .+....
T Consensus 204 e~~~~~~~~~~~~~~---~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~-~~~---~~~~~~------------- 262 (420)
T 3gbx_A 204 MAHVAGLIAAGVYPN---PVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELYK-KLN---SAVFPS------------- 262 (420)
T ss_dssp CTTTHHHHHTTSSCC---STTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHHH-HHH---HHHC---------------
T ss_pred CCcchhceecccCCc---ccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHHH-Hhh---hhcCCC-------------
Confidence 998655443222111 123589999999999987764 77777651 3322 211 011100
Q ss_pred cccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCCcc
Q 038818 345 QITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 345 ~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
+ ..+.. ....++..++.....++++++.++..++++++.+.|.+. +++++.+ ...+++.+.+.+...
T Consensus 263 ~-~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--------- 331 (420)
T 3gbx_A 263 A-QGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNL--------- 331 (420)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC---------
T ss_pred C-CCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCC---------
Confidence 0 00000 111233444444445778889999999999999999884 8888753 345666666653210
Q ss_pred chHHHHHHHHHHHHhcCcEEEee------eeECCEeEEEEEecCC---CCcHHHHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQLYVSH------GMVAGIYFIRFAVGAT---LTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~------~~~~~~~~lR~~~~~~---~tt~~did~~i~~l~~~~~~ 481 (486)
....+.+.+.++|+.+... ....+...+|+++... ..++++|+++++.|++++++
T Consensus 332 ----~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 332 ----TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp ----CHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 1234556666678754331 1112334599998432 24578999999999988754
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=194.41 Aligned_cols=285 Identities=14% Similarity=0.103 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH--
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA-- 189 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~-- 189 (486)
.....++++.+++++|.+ ..+++++||+|+..++.+... ++..|+++...|.+....+
T Consensus 64 ~~~~~~l~~~la~~~g~~---------~~i~~~sG~~a~~~~l~~~~~-----------~gd~vl~~~~~~~~~~~~~~~ 123 (398)
T 1gc0_A 64 NPTLNLLEARMASLEGGE---------AGLALASGMGAITSTLWTLLR-----------PGDEVLLGNTLYGCTFAFLHH 123 (398)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSCCSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhc-----------CCCEEEEeCCCchhHHHHHHH
Confidence 344556667788888875 346777779999888777632 5667888999999887766
Q ss_pred --HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 190 --QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 190 --~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
...|+ +++.++.+ |+++|+++|+++ +.+|+++.++|++|.+.|+++|+++|++||+++|+|+
T Consensus 124 ~~~~~g~---~~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~ 187 (398)
T 1gc0_A 124 GIGEFGV---KLRHVDMA-------DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 187 (398)
T ss_dssp TGGGGTC---EEEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEEC
T ss_pred HHHHcCC---EEEEECCC-------CHHHHHHhcCCC------CeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEEC
Confidence 55677 88888753 899999988653 4578889999999999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
+|+.+....+. . .++|.++.++||++++|.+ +|+++.+++. +...+.....++.
T Consensus 188 ~~~~~~~~~~~-~------~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~-~~~~~~~~~~~~~---------------- 243 (398)
T 1gc0_A 188 TYCTPYLQRPL-E------LGADLVVHSATKYLSGHGDITAGIVVGSQAL-VDRIRLQGLKDMT---------------- 243 (398)
T ss_dssp TTTHHHHCCGG-G------GTCSEEEEETTTTTTCSSSCCCEEEEECHHH-HHHHHHTHHHHHT----------------
T ss_pred CCcccccCCch-h------hCceEEEECCccccCCCCCCeEEEEEEChHH-HHHHHHHHhhccC----------------
Confidence 99876543321 1 2689999999999998876 5877776543 2211211111100
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe--------------cC---CCeeEEEEEe
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--------------AP---RNFAVVCFRV 408 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~--------------~~---~~~~~v~f~~ 408 (486)
+-....+.+|+.++.+ +.+..+.++..++++++.+.|++++.++-+ .+ ...++++|.+
T Consensus 244 ---~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 318 (398)
T 1gc0_A 244 ---GAVLSPHDAALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFEL 318 (398)
T ss_dssp ---CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEE
T ss_pred ---CCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEE
Confidence 0012345556665544 456677788888899999999887655421 11 1357788876
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEe------------eee------------ECC--EeEEEEEecCCC
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVS------------HGM------------VAG--IYFIRFAVGATL 462 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~------------~~~------------~~~--~~~lR~~~~~~~ 462 (486)
.+. .+ ...+.+.+.++.... +.. ..| .+.+|+++. ..
T Consensus 319 ~~~-------------~~---~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~ 381 (398)
T 1gc0_A 319 KGG-------------IG---AGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LE 381 (398)
T ss_dssp TTH-------------HH---HHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SS
T ss_pred CCC-------------HH---HHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cC
Confidence 431 11 223333344443221 100 011 368999995 57
Q ss_pred CcHHHHHHHHHHHHHH
Q 038818 463 TEDRHVIAAWKVVQEK 478 (486)
Q Consensus 463 tt~~did~~i~~l~~~ 478 (486)
+++++|+.+.++|+++
T Consensus 382 ~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 382 DIDDLLADVQQALKAS 397 (398)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 7888999999998865
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=200.87 Aligned_cols=331 Identities=13% Similarity=0.043 Sum_probs=206.9
Q ss_pred CHHHHHHHHHHhhcCC----Ccccccc---ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCc-hHHHHHHHHH
Q 038818 85 SIAGFLGEMLSSGFNV----VGFNWMS---SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT-CEAILCTLAA 156 (486)
Q Consensus 85 ~~~~~~~~~l~~~~n~----~~~~~~~---~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~gg-t~a~~~al~~ 156 (486)
.+|..+.+.+...+.. +...|.. ++....+..++++++++++|.++. ..+++|+|+ |+|+..++..
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~------~~v~~~~g~gt~al~~~~~~ 86 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND------YQILFLQGGASLQFTMLPMN 86 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC------ceEEEECCcchHHHHHHHHH
Confidence 3344455555555432 2223333 566677788899999999999632 167889888 8988776655
Q ss_pred HHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHH-HHHHHHHCCCccEEEE
Q 038818 157 ARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQA-AIDLDIQAGLIPLFLC 235 (486)
Q Consensus 157 a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~-~l~~~~~~g~~p~~vv 235 (486)
.... +.++++|+++..+|++... ++.. | +++.+|++++ ++.+|+++|++ ++++. +.+|+
T Consensus 87 l~~~--------~~~g~~vi~~~~~~~~~~~-~~~~--g--~~~~v~~~~~-~~~~d~~~l~~~~i~~~------~k~v~ 146 (360)
T 1w23_A 87 LLTK--------GTIGNYVLTGSWSEKALKE-AKLL--G--ETHIAASTKA-NSYQSIPDFSEFQLNEN------DAYLH 146 (360)
T ss_dssp HCCT--------TCEEEEEECSHHHHHHHHH-HHTT--S--EEEEEEECGG-GTSCSCCCGGGCCCCTT------EEEEE
T ss_pred hcCC--------CCcccEEEecchhHHHHHH-HHHh--C--CeEEeecccc-cCcCCccchHhhccCCC------CCEEE
Confidence 4321 1135678888778877433 3433 3 5888888742 34689999988 77432 45788
Q ss_pred eecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 236 ATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 236 ~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
+++++|++|.+-| +|+++||+++++|++|+.+....+ +...|.++.++||+++ |.|+|+++++++.
T Consensus 147 ~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~~--------~~~~di~~~s~sK~~~-~~G~G~~~~~~~~ 212 (360)
T 1w23_A 147 ITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPLK--------VNQFGMIYAGAQKNLG-PSGVTVVIVKKDL 212 (360)
T ss_dssp EESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCCC--------GGGCSEEEEETTTTTS-CTTCEEEEEEHHH
T ss_pred EeCCCCCcceecc-----cccccCCceEEEechhhcCCCCcC--------cccCCEEEEEcccccC-CCCcEEEEEcHHH
Confidence 8999999999855 233389999999999976543221 1123899999999887 6689999987542
Q ss_pred HHHHHhcC-CcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCC
Q 038818 316 ALIKALST-NPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVA-NLRNFLRSHVRMAQLFQELVGGDNR 392 (486)
Q Consensus 316 ~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~~~ 392 (486)
.. .+.. .+.++..... .. ..... .+.. ....++..++..+... +++++.++..++++++.+.|+++++
T Consensus 213 -~~-~~~~~~~~~~~~~~~-----~~-~~~~~-~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 283 (360)
T 1w23_A 213 -LN-TKVEQVPTMLQYATH-----IK-SDSLY-NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNG 283 (360)
T ss_dssp -HC-SCCTTCCGGGCHHHH-----HH-TTTCS-SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred -Hh-hcccCCcchhhhhhh-----hh-ccCCC-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccC
Confidence 21 1111 1111100000 00 00000 0101 1112344455544444 7888999999999999999999876
Q ss_pred e-EEecCC--Cee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHH
Q 038818 393 F-EIVAPR--NFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 393 ~-~~~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~di 468 (486)
+ ....++ ..+ +++|.+.. .....++.+.|.+.|+.+..+.. ...++|+++. ..++++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~--~~~~iRis~~-~~~~~~~i 346 (360)
T 1w23_A 284 FYVGHAEKGSRSLMNVTFNLRN--------------EELNQQFLAKAKEQGFVGLNGHR--SVGGCRASIY-NAVPIDAC 346 (360)
T ss_dssp SSEESSCGGGBCSSEEEEECSS--------------HHHHHHHHHHHHHTTEESCBCCT--TTCSEEEECC-TTSCHHHH
T ss_pred cccccCCchhccCcEEEEEcCC--------------CccHHHHHHHHHHCCeeeecCCC--CCCeEEEEec-CCCCHHHH
Confidence 5 654222 234 67776642 12234677777778875422211 2457999995 56688899
Q ss_pred HHHHHHHHHHHHH
Q 038818 469 IAAWKVVQEKLDG 481 (486)
Q Consensus 469 d~~i~~l~~~~~~ 481 (486)
+++++.|++++++
T Consensus 347 ~~~~~~l~~~~~~ 359 (360)
T 1w23_A 347 IALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=195.07 Aligned_cols=315 Identities=10% Similarity=0.041 Sum_probs=208.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHc-CCCCCCccCCCcc---eEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEec
Q 038818 103 FNWMSSPAATELENIVMDWLGEML-KLPKSFLFSGTGG---GVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGS 178 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~-g~~~~~~~~~~~~---~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s 178 (486)
..|.......++++.+.+++.+.. +.+++ . .++|+||++|+..++.+... +++.|+++
T Consensus 82 ~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~-------~~~~i~~t~g~~~al~~~~~~l~~-----------~gd~Vl~~ 143 (430)
T 2x5f_A 82 FPYAPPQGIEELRDLWQQKMLRDNPELSID-------NMSRPIVTNALTHGLSLVGDLFVN-----------QDDTILLP 143 (430)
T ss_dssp SSCCCTTCCHHHHHHHHHHHHHHCTTCCGG-------GBCCCEEESHHHHHHHHHHHHHCC-----------TTCEEEEE
T ss_pred cccCCCCCCHHHHHHHHHHHhccCcccCCC-------ccceEEEcCCchHHHHHHHHHHhC-----------CCCEEEEc
Confidence 344444456788888888887663 33333 5 89999999999888776543 56778888
Q ss_pred CCCchHHHHHHHH-cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHH
Q 038818 179 DQTHSALQKAAQI-AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCD 254 (486)
Q Consensus 179 ~~~H~s~~~a~~~-~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~ 254 (486)
..+|.++...++. .|. +++.+|+++. ++.+|+++|++++++. +..+.+|+++.++|++|.+-| +++|++
T Consensus 144 ~p~y~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~ 216 (430)
T 2x5f_A 144 EHNWGNYKLVFNTRNGA---NLQTYPIFDK-DGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVE 216 (430)
T ss_dssp SSCCTHHHHHHTTTTCC---EEEEECCBCT-TSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred CCcCccHHHHHHHhcCC---eEEEEeccCc-cCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHH
Confidence 8999999999998 899 9999998753 3689999999999752 123457788889999999988 899999
Q ss_pred HHHH-----hCceEEeeccccchhccCccchh---hhcCCCCC---CceeeccccccCCC-CcceEEEe--eCchHHHHH
Q 038818 255 IAKR-----YSIWVHVDAAYAGSACICPEFRH---FIDGIEGA---DSFSLNAHKWFFTT-LDCCCLWV--KNPNALIKA 320 (486)
Q Consensus 255 i~~~-----~g~~lhvD~a~g~~~~~~~~~~~---~~~~~~~a---Dsi~~~~hK~l~~p-~~~g~~~~--~~~~~~~~~ 320 (486)
+|++ ||+++++|++|+.+......... .+.+.... +.+..++||+++.| ..+|++++ +++......
T Consensus 217 ~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l 296 (430)
T 2x5f_A 217 AIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVL 296 (430)
T ss_dssp HHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHH
T ss_pred HHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHH
Confidence 9999 99999999999865432211111 12222233 56678899999744 34788888 244333221
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc-h----HHHHHHHHHHHHHHHHHHHHHh----CCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG-V----ANLRNFLRSHVRMAQLFQELVG----GDN 391 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~----~g~~~~~~~~~~~a~~l~~~L~----~~~ 391 (486)
.......... .+.....+..+++...+. . +.++++.++..++++++.+.|+ +.
T Consensus 297 ~~~~~~~~~~-----------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~- 358 (430)
T 2x5f_A 297 EAKVKGLIRS-----------------NISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS- 358 (430)
T ss_dssp HHHHHHHHHT-----------------TTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-
T ss_pred HHHHhhhhhc-----------------ccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-
Confidence 1110000000 000123333444444332 1 2233377778888999999998 55
Q ss_pred CeEEecCCCeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeECCEeEEEEEecCCCCcHHHHH
Q 038818 392 RFEIVAPRNFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVAGIYFIRFAVGATLTEDRHVI 469 (486)
Q Consensus 392 ~~~~~~~~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did 469 (486)
++++.. +..++ +.+.+.+. + ..++.+.|.+ .|+.+ .+. +.+++|++++. +++++|+
T Consensus 359 g~~~~~-~~~g~~~~~~~~~~-------------~--~~~~~~~l~~~~gi~v-~~g---~~~~iRis~~~--~~~e~i~ 416 (430)
T 2x5f_A 359 HWQAYD-FNSGYFMAIKVHDV-------------D--PEALRKHLIDKYSIGV-IAL---NATDIRIAFSC--VEKDDIP 416 (430)
T ss_dssp TEEECC-CCBSSEEEEEESSS-------------C--HHHHHHHHHHHHCEEC-EEC---SSSEEEEEGGG--SCGGGHH
T ss_pred CceeeC-CCceEEEEeCCCCC-------------C--HHHHHHHHHHhCCEEE-ecC---CCCeEEEEEec--CCHHHHH
Confidence 787754 44444 55555411 1 2356666766 78754 332 45689999963 4777999
Q ss_pred HHHHHHHHHHHHH
Q 038818 470 AAWKVVQEKLDGI 482 (486)
Q Consensus 470 ~~i~~l~~~~~~l 482 (486)
++++.|+++++++
T Consensus 417 ~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 417 HVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=189.39 Aligned_cols=292 Identities=13% Similarity=0.060 Sum_probs=192.6
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++.+++++|.+.+ ..++|+||++++..++.+. . + ..|++...+|.++...++..|.
T Consensus 63 ~l~~~la~~~~~~~~-------~v~~~~g~~~al~~~~~~~--~----------g-d~vl~~~p~y~~~~~~~~~~g~-- 120 (364)
T 1lc5_A 63 HLHQALARHHQVPAS-------WILAGNGETESIFTVASGL--K----------P-RRAMIVTPGFAEYGRALAQSGC-- 120 (364)
T ss_dssp HHHHHHHHHHTSCGG-------GEEEESSHHHHHHHHHHHH--C----------C-SEEEEEESCCTHHHHHHHHTTC--
T ss_pred HHHHHHHHHHCcCHH-------HEEECCCHHHHHHHHHHHc--C----------C-CeEEEeCCCcHHHHHHHHHcCC--
Confidence 344566677787654 6899999999998777665 2 3 4577777899999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchh
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+++.+|.++.+.+.+ ++++.+.+.+ .+.+|+++.++|++|.+-| +++|+++|++||+++++|++|+.+.
T Consensus 121 -~~~~v~~~~~~~~~~-l~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 192 (364)
T 1lc5_A 121 -EIRRWSLREADGWQL-TDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI 192 (364)
T ss_dssp -EEEEEECCGGGTTCC-CTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGS
T ss_pred -eEEEEeCCcccccch-hHHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhc
Confidence 999999874222332 3434333321 2346777889999999988 8999999999999999999997654
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF 352 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~ 352 (486)
.........+ +....|.+..++||+++.| ..+|++++.+++........... + ..
T Consensus 193 ~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~-----------------~------~~ 248 (364)
T 1lc5_A 193 PHETGFIPAL-KDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP-----------------W------SV 248 (364)
T ss_dssp TTCCCSGGGC-TTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT-----------------T------CS
T ss_pred cCccchhhHh-ccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCC-----------------C------CC
Confidence 3111111111 1124677888999999844 45788883444443322111000 0 12
Q ss_pred CchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHH
Q 038818 353 RALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKL 431 (486)
Q Consensus 353 ~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l 431 (486)
..+..+++...+.. +.+++..++..++++++.+.|+++|++++. ++..+.+.+.+... ..++
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~----------------~~~l 311 (364)
T 1lc5_A 249 NALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCERE----------------DIDL 311 (364)
T ss_dssp CHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCT----------------TCCH
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCeEEEEECCCc----------------HHHH
Confidence 34455555555433 457778888889999999999998899875 45556666665421 1245
Q ss_pred HHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 432 LESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 432 ~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+.|.++|+.+..+..+. +..++|+++. +++|+++++++|+++++++.
T Consensus 312 ~~~l~~~gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 312 QRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp HHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC----
T ss_pred HHHHHHCCcEEeeCcccCCCCCCEEEEEeC----CHHHHHHHHHHHHHHhhccc
Confidence 666777787543333222 2568999974 47799999999999877653
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=188.70 Aligned_cols=284 Identities=10% Similarity=0.079 Sum_probs=193.4
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHHHHHHHHcCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
++++.+++++|.+.+ ..++|+|+++++..++.+... ++ +.|+++..+|.++..+++..|.
T Consensus 62 ~lr~~la~~~~~~~~-------~v~~~~G~~~ai~~~~~~~~~-----------~g~d~Vl~~~p~~~~~~~~~~~~g~- 122 (356)
T 1fg7_A 62 AVIENYAQYAGVKPE-------QVLVSRGADEGIELLIRAFCE-----------PGKDAILYCPPTYGMYSVSAETIGV- 122 (356)
T ss_dssp HHHHHHHHHHTSCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTTCEEEECSSSCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCChH-------HEEEcCCHHHHHHHHHHHHhC-----------CCCCEEEEeCCChHHHHHHHHHcCC-
Confidence 455667777788754 689999999999877776542 45 6788899999999999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHH---HHHHHHhCceEEeeccccch
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPL---CDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I---~~i~~~~g~~lhvD~a~g~~ 272 (486)
+++.+|.++ ++.+|+++|+++++ . +.+|+++.++|++|.+-|.++| +++|+ +|+++++|++|+.+
T Consensus 123 --~~~~v~~~~--~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~ 190 (356)
T 1fg7_A 123 --ECRTVPTLD--NWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEF 190 (356)
T ss_dssp --EEEECCCCT--TSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGG
T ss_pred --EEEEeeCCC--CCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhh
Confidence 999999874 57899999998875 2 4578888999999999776555 45555 89999999999865
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCC-CCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFT-TLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR 351 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~ 351 (486)
.. ......... ....+.+..+++|+++. ...+|+++++ ++...........| .
T Consensus 191 ~~-~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~-----------------------~ 244 (356)
T 1fg7_A 191 CP-QASLAGWLA-EYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAPY-----------------------P 244 (356)
T ss_dssp SG-GGCSGGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSS-----------------------C
T ss_pred cC-CCcHHHHHh-hCCCEEEEecchHhhcCchhhhEEEEeC-HHHHHHHHHhcCCC-----------------------C
Confidence 41 111111111 11346778899999974 3457888874 33332211111100 1
Q ss_pred CCchHHHHHHHHhchHH---HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 352 FRALKLWLVLRSFGVAN---LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 352 ~~~l~~~~~l~~~g~~g---~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
...+..+++...+...+ +++..++..++++++.+.|++++++....++..+.+.+++. . .
T Consensus 245 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~----------------~ 307 (356)
T 1fg7_A 245 LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-A----------------S 307 (356)
T ss_dssp SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-T----------------H
T ss_pred CCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-C----------------H
Confidence 23445555666665444 67788888899999999999887653444555566666653 1 2
Q ss_pred HHHHHHHHhcCcEEEeeeeECC-EeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 429 RKLLESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 429 ~~l~~~l~~~g~~~~~~~~~~~-~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.++.+.|.++|+.+.......+ .+++|+++. +++|+++++++|+++
T Consensus 308 ~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~----~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 308 SAVFKSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRVIDALRAE 354 (356)
T ss_dssp HHHHHHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC----CHHHHHHHHHHHHhh
Confidence 3566677777875433122222 358999984 467999999998753
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=195.73 Aligned_cols=307 Identities=11% Similarity=0.086 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH-HHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-LQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~a~~ 190 (486)
..++...++++++++|.+.. .++++|||+|+..++.++.. +++.|+++..+|.+ +...+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~~--------~v~~~~Gs~a~~~al~~~~~-----------~gd~Vi~~~~~~~~~~~~~~~ 137 (425)
T 3ecd_A 77 DEVEALAIERVKRLFNAGHA--------NVQPHSGAQANGAVMLALAK-----------PGDTVLGMSLDAGGHLTHGAK 137 (425)
T ss_dssp CHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEECC-----------
T ss_pred HHHHHHHHHHHHHHhCCCCc--------eeecCchHHHHHHHHHHccC-----------CCCEEEEcccccccceecchh
Confidence 35566666889999997642 35688999999888776632 56778888899987 323332
Q ss_pred --HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 191 --IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 191 --~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
..|.+. .++.+++++ +++.+|+++|++++++.. +.+|+++.+++ |...++++|.++|++||+++|+|++
T Consensus 138 ~~~~g~~~-~~~~~~~~~-~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~ 208 (425)
T 3ecd_A 138 PALSGKWF-NALQYGVSR-DTMLIDYDQVEALAQQHK-----PSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMA 208 (425)
T ss_dssp -------C-EEEEECCCT-TTSSCCHHHHHHHHHHHC-----CSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECG
T ss_pred hhhcccce-eeeecCCCc-ccCccCHHHHHHHHhhcC-----CcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECc
Confidence 444411 334555553 357999999999997532 33566665444 7889999999999999999999999
Q ss_pred ccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 269 YAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
|+.+.......... +..+|.++.++||++.+|. +|+++.+++........ +.... ...
T Consensus 209 ~~~g~~~~~~~~~~---~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~----~~~~~--------------~~~ 266 (425)
T 3ecd_A 209 HIAGVIAAGRHANP---VEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINS----AVFPG--------------LQG 266 (425)
T ss_dssp GGHHHHHTTSSCCG---GGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHH----HHC-------------------
T ss_pred ChHhhhhcccccCc---hhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHh----hhCcc--------------ccC
Confidence 76655433222211 2347999999999997775 57777775544321111 11000 000
Q ss_pred CCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 349 SRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 349 sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
+.. ....++..++.....+++.++.++..++++++.+.|.+. ++++..+ ...+++.+.+.+...
T Consensus 267 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------------- 332 (425)
T 3ecd_A 267 GPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKGL------------- 332 (425)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC-------------
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCCC-------------
Confidence 000 112334444544455778889999999999999999885 7888754 345666666653210
Q ss_pred HHHHHHHHHHhcCcEEEeee------eECCEeEEEEEec---CCCCcHHHHHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHG------MVAGIYFIRFAVG---ATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~------~~~~~~~lR~~~~---~~~tt~~did~~i~~l~~~~~~l 482 (486)
....+.+.+.++|+.+.... .......+|+++. ....++++|+++++.|++++++.
T Consensus 333 ~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 333 KGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 12345666667787543211 0112357999853 22335889999999999988765
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=188.19 Aligned_cols=317 Identities=10% Similarity=0.041 Sum_probs=194.2
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 106 MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 106 ~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
..++...++| +.+++++|.+ ..+++++||+|+..++.+++... ..+ -.++..|+++..+|.++
T Consensus 31 ~~~~~~~~l~----~~la~~~~~~---------~~i~~~sGt~a~~~al~~~~~~~--~~~--~~~g~~Vi~~~~~~~~~ 93 (390)
T 3b8x_A 31 TMGEYVKQYE----TQFAKTFGSK---------YAVMVSSGSTANLLMIAALFFTK--KPR--LKKGDEIIVPAVSWSTT 93 (390)
T ss_dssp SSCHHHHHHH----HHHHHHHTCS---------EEEEESCHHHHHHHHHHHTTSSS--SCS--CCTTCEEEEESSSCHHH
T ss_pred CCChHHHHHH----HHHHHHHCCC---------cEEEECCHHHHHHHHHHHHHhhh--hcC--CCCcCEEEECCCCcHHH
Confidence 3344444444 5567777764 36889999999988887763100 000 01567888999999999
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
..+++..|+ +++.+|++++ ++.+|+++|+++|++. +.+|+++ +++|...|+++|.++|++||+++|+
T Consensus 94 ~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~ 160 (390)
T 3b8x_A 94 YYPLQQYGL---RVKFVDIDIN-TLNIDIESLKEAVTDS------TKAILTV---NLLGNPNNFDEINKIIGGRDIILLE 160 (390)
T ss_dssp HHHHHHTTC---EEEEECBCTT-TCSBCHHHHHHHCCTT------EEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHcCC---EEEEEecCcc-ccCcCHHHHHHHhCcC------CeEEEEE---CCccChhhHHHHHHHHHHcCCEEEE
Confidence 999999999 9999999863 4799999999998653 3355555 3678899999999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCcee--eccccccCCCCcceEEEeeCchHHHHH--hcCCcccccCc--------cC
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFS--LNAHKWFFTTLDCCCLWVKNPNALIKA--LSTNPEFLRNK--------AS 333 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~--~~~hK~l~~p~~~g~~~~~~~~~~~~~--~~~~~~y~~~~--------~~ 333 (486)
|+||+.+..... +.. +. ..|..+ ..++|.+.+|.| |+++++++...... +... ++..+. ..
T Consensus 161 D~a~~~g~~~~~--~~~--g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~-g~~~~~~~~~~~~~~~ 233 (390)
T 3b8x_A 161 DNCESMGATFNN--KCA--GT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAH-GWTRNLPKKNKVTGVK 233 (390)
T ss_dssp ECTTCTTCEETT--EET--TS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBT-TBSTTSCSEETTTEEC
T ss_pred ECcCcccCEECC--ccc--cc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhc-CCCccccccccccccc
Confidence 999985544321 111 11 124334 333444555554 77777765432211 1111 100000 00
Q ss_pred CCCCccCCCCccccCCCC--CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeE--EEEEe
Q 038818 334 DSKQVVDYKDWQITLSRR--FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAV--VCFRV 408 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~--v~f~~ 408 (486)
..........+. ..+.+ ...+.+++++..+ +.+++..++..++++++.+.|+++|++++..++ ..+. +.+.+
T Consensus 234 ~~~~~~~~~~~~-~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~ 310 (390)
T 3b8x_A 234 SDDQFEESFKFV-LPGYNVRPLEMSGAIGIEQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFII 310 (390)
T ss_dssp CSCTTTSSSCBC-SCCCBCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEE
T ss_pred ccccccccccee-ccccccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEe
Confidence 000000000000 11222 3445566665543 778889999999999999999999899886542 2333 34444
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEe---ee-----e-EC--C--------------EeEEEEEecCCCC
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVS---HG-----M-VA--G--------------IYFIRFAVGATLT 463 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~-----~-~~--~--------------~~~lR~~~~~~~t 463 (486)
.+.. .. ...++.+.|.++|+..-. +. . +. + ...+|+++ ++.+
T Consensus 311 ~~~~--------~~----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~ 377 (390)
T 3b8x_A 311 KKDS--------GV----IRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGN-HQIE 377 (390)
T ss_dssp CTTS--------CC----CHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEEC-CSSC
T ss_pred cCcC--------cc----cHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeC-CCCC
Confidence 4210 00 123566677777874221 11 0 00 0 13699998 6899
Q ss_pred cHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVV 475 (486)
Q Consensus 464 t~~did~~i~~l 475 (486)
|++|||+++++|
T Consensus 378 t~~di~~i~~~l 389 (390)
T 3b8x_A 378 LFDEIDYLREVL 389 (390)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhh
Confidence 999999999876
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=195.70 Aligned_cols=286 Identities=13% Similarity=0.097 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH---
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA--- 188 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a--- 188 (486)
.....++++++++++|.+ ..+++++|++|+..++.+... +++.|+++...|.+....
T Consensus 113 ~~~~~~l~~~lA~l~g~~---------~~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~~~~~ 172 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAE---------STLLMASGMCASTVMLLALVP-----------AGGHIVTTTDCYRKTRIFIET 172 (445)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHSC-----------SSCEEEEETTSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---------cEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHHHHHH
Confidence 344455667788888875 246666677898877775432 566788888888876664
Q ss_pred -HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 189 -AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 189 -~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
++..|+ +++.+|.+ |+++|+++|++++ +.+|+++.++|++|.+.|+++|+++|+++|+++|+|+
T Consensus 173 ~~~~~G~---~v~~v~~~-------d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~ 237 (445)
T 1qgn_A 173 ILPKMGI---TATVIDPA-------DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDG 237 (445)
T ss_dssp TGGGGTC---EEEEECSS-------CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCC---EEEEeCCC-------CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 455688 88888753 8999999998643 2478899999999999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
+|+.+....+ . . .++|.++.++||+++++. .+|+++.+++ .+..... +...
T Consensus 238 a~~~~~~~~~-~-----~-~g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~~~l~~----~~~~--------------- 290 (445)
T 1qgn_A 238 TFATPLNQKA-L-----A-LGADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRN----LHHI--------------- 290 (445)
T ss_dssp TTTCTTTCCT-T-----T-TTCSEEEECTTTTTTCSSSCCCEEEEECHH-HHHHHHH----HHHH---------------
T ss_pred CCcccccCCc-c-----c-cCCEEEEECCcccccccccceEEEEEECHH-HHHHHHH----HHHH---------------
Confidence 9976543222 1 1 268999999999998653 2788777653 3222110 0000
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCe-EEecCC----------------CeeEEEEEe
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRF-EIVAPR----------------NFAVVCFRV 408 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~----------------~~~~v~f~~ 408 (486)
.+-....+..|..++ +.+.+..++++..++++++.+.|+++|++ ++..+. ..++++|.+
T Consensus 291 --~g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l 366 (445)
T 1qgn_A 291 --LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEV 366 (445)
T ss_dssp --HCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEE
T ss_pred --hCCCCCHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEE
Confidence 000123345566555 34666777888888899999999999988 454431 367899988
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCc------E---EEeeee------------ECC--EeEEEEEecCCCCcH
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQ------L---YVSHGM------------VAG--IYFIRFAVGATLTED 465 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~------~---~~~~~~------------~~~--~~~lR~~~~~~~tt~ 465 (486)
.+. .+...++.+.+...++ . ...+.. ..| .+.+|+|++ .
T Consensus 367 ~~~-------------~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-----~ 428 (445)
T 1qgn_A 367 DGD-------------LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-----V 428 (445)
T ss_dssp SSC-------------HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-----S
T ss_pred CCC-------------HHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-----c
Confidence 642 2223455555431111 1 111100 012 368999995 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 038818 466 RHVIAAWKVVQEKLDG 481 (486)
Q Consensus 466 ~did~~i~~l~~~~~~ 481 (486)
||+|.+++.|+++++.
T Consensus 429 Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 429 EDFDDLKADILQALDS 444 (445)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4899999999998764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=191.09 Aligned_cols=284 Identities=12% Similarity=0.099 Sum_probs=193.1
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++++++++|.+.+ ..++|+|||+|+..++.+... +++.|+++..+|.++...++..|.
T Consensus 69 ~lr~~la~~~g~~~~-------~i~~t~g~~~al~~~~~~l~~-----------~gd~Vl~~~p~~~~~~~~~~~~g~-- 128 (360)
T 3hdo_A 69 KLREVAGELYGFDPS-------WIIMANGSDEVLNNLIRAFAA-----------EGEEIGYVHPSYSYYGTLAEVQGA-- 128 (360)
T ss_dssp HHHHHHHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSSCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCcCcc-------eEEEcCCHHHHHHHHHHHHhC-----------CCCEEEEcCCChHHHHHHHHHCCC--
Confidence 455677778887654 789999999999888776533 567788899999999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccC
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACIC 276 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~ 276 (486)
+++.+|+++ ++.+ +++++.+ .+.+|+++.++|++|.+.|+++|.++|+++|+++++|++|+.+.. .
T Consensus 129 -~~~~v~~~~--~~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~-~ 194 (360)
T 3hdo_A 129 -RVRTFGLTG--DFRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAE-S 194 (360)
T ss_dssp -EEEEECBCT--TSSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSS-C
T ss_pred -EEEEeeCCC--CCCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCC-c
Confidence 999999975 3455 4443322 133788889999999999999999999999999999999986421 1
Q ss_pred ccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCch
Q 038818 277 PEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL 355 (486)
Q Consensus 277 ~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l 355 (486)
....... ....+.+..+++|+++ ....+|+++. +++...........| ....+
T Consensus 195 -~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------------~~~~~ 248 (360)
T 3hdo_A 195 -NALELVR-RHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHY-----------------------NLDRL 248 (360)
T ss_dssp -CCTHHHH-HCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSC-----------------------CSCHH
T ss_pred -chhHHhc-cCCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCC-----------------------CCCHH
Confidence 1111111 1134466779999987 4456788877 443332211111000 11233
Q ss_pred HHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHH
Q 038818 356 KLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLES 434 (486)
Q Consensus 356 ~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 434 (486)
..+++...+ ..+.+++..++..++++++.+.|+++ ++++. ++..+.+.+.+.... ..++.+.
T Consensus 249 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~---------------~~~l~~~ 311 (360)
T 3hdo_A 249 AQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDRD---------------GKRVYDG 311 (360)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTCC---------------HHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCCC---------------HHHHHHH
Confidence 333333333 24567888889999999999999988 88875 555566666543211 2456677
Q ss_pred HHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 435 INASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 435 l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
|.++|+.+.......+..++|+++. +++|+|+++++|+++.+.
T Consensus 312 l~~~gi~v~~~~~~~~~~~iRis~~----~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 312 LYARKVLVRHFSDPLLAHGMRISIG----TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp HHHTTEECBCCCSTTTTTSEEEECC----CHHHHHHHHHHHHHHHC-
T ss_pred HHHCCEEEEECCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHhcc
Confidence 7778874332222223578999984 677999999999987643
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-22 Score=193.64 Aligned_cols=317 Identities=14% Similarity=0.107 Sum_probs=192.6
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN 169 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 169 (486)
+.+.+...... ...|...+...++ ++++++++|.+ ..++++|||+|+..++.+...
T Consensus 20 ~~~a~~~~~~~-~~~y~~~~~~~~l----~~~la~~~g~~---------~~~~~~~gt~a~~~~~~~~~~---------- 75 (347)
T 1jg8_A 20 MRKAMAQAEVG-DDVYGEDPTINEL----ERLAAETFGKE---------AALFVPSGTMGNQVSIMAHTQ---------- 75 (347)
T ss_dssp HHHHHHTCCCC-CGGGTCCHHHHHH----HHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHCC----------
T ss_pred HHHHHhcCCCC-CcccCCChHHHHH----HHHHHHHhCCc---------eEEEecCcHHHHHHHHHHhcC----------
Confidence 44444443221 1244445544444 46778888864 358889999998877655432
Q ss_pred CCCeEEEecCCCchHHHH---HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc-cc
Q 038818 170 ISRLVVYGSDQTHSALQK---AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI-TT 245 (486)
Q Consensus 170 ~~~~~v~~s~~~H~s~~~---a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~-G~ 245 (486)
+++.|+++..+|.+... .+...|+ +++.+ .++ ++.+|+++|+++|++....+..+.+|+++.++|++ |.
T Consensus 76 -~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 76 -RGDEVILEADSHIFWYEVGAMAVLSGV---MPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp -TTCEEEEETTCHHHHSSTTHHHHHTCC---EEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred -CCCEEEEcCcchhhhccccchhhccCe---EEEEe-cCC--CCccCHHHHHHHhccccccccCceEEEEeccccccCCc
Confidence 56788889999987543 5677888 88888 443 46899999999886411011135678889999999 99
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhc--cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHH
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSAC--ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~--~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~ 320 (486)
+-| +++|+++|++||+++|+|+||.-+.. ......... ..+|.+++++||++++| .|.+++.+++...+.
T Consensus 149 ~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~l~~~--~G~~~~~~~~~~~~~ 223 (347)
T 1jg8_A 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA---GYADSVMFCLSKGLCAP--VGSVVVGDRDFIERA 223 (347)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH---HTCSEEEEESSSTTCCS--SCEEEEECHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc---ccccEEEEecccccCCC--ceEEEEcCHHHHHHH
Confidence 865 57889999999999999998742111 011111111 26788899999999877 454455555443322
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-APR 399 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~ 399 (486)
..... +... +....++..+.+...+ +...+.+++..++++++.+.|+++ ++++. .++
T Consensus 224 ~~~~~-~~~~------------------~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 281 (347)
T 1jg8_A 224 RKARK-MLGG------------------GMRQAGVLAAAGIIAL--TKMVDRLKEDHENARFLALKLKEI-GYSVNPEDV 281 (347)
T ss_dssp HHHHH-HHTC------------------CCSSTHHHHHHHHHHH--HHSSTTHHHHHHHHHHHHHHHHHH-TCBCCGGGC
T ss_pred HHHHH-HcCC------------------chhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CceeccCCC
Confidence 11111 1100 0011122222222222 111122344456778888888877 67653 245
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..+++.+.+.... . + ..++.+.|.++|+.+... +..++|+++ +..++++|++++++.|++++
T Consensus 282 ~~~~~~~~~~~~~---------~--~--~~~~~~~l~~~gi~v~~~----~~~~iRl~~-~~~~~~e~i~~~~~~l~~~l 343 (347)
T 1jg8_A 282 KTNMVILRTDNLK---------V--N--AHGFIEALRNSGVLANAV----SDTEIRLVT-HKDVSRNDIEEALNIFEKLF 343 (347)
T ss_dssp CSSEEEEECTTSS---------S--C--HHHHHHHHHHHTEECEEE----ETTEEEEEC-CTTSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEEccccc---------C--C--HHHHHHHHHHCCCEEecC----CCCeEEEEe-CCCCCHHHHHHHHHHHHHHH
Confidence 5667777664211 0 1 235666676778754322 135799998 45778899999999999987
Q ss_pred HHH
Q 038818 480 DGI 482 (486)
Q Consensus 480 ~~l 482 (486)
+++
T Consensus 344 ~~~ 346 (347)
T 1jg8_A 344 RKF 346 (347)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=199.58 Aligned_cols=318 Identities=13% Similarity=0.084 Sum_probs=203.2
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+... .|..++...++| +.+++++|.+ .+++++|||+|+..++.+++-.
T Consensus 16 ~~v~~a~~~~~~~~--~~~~~~~~~~l~----~~la~~~~~~---------~~~~~~sGt~al~~al~~~~~~------- 73 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG--QYILGPEVTELE----DRLADFVGAK---------YCISCANGTDALQIVQMALGVG------- 73 (367)
T ss_dssp HHHHHHHHHHHHHC--CCSSCHHHHHHH----HHHHHHHTCS---------EEEEESCHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHhcC--CccCChHHHHHH----HHHHHHhCCC---------cEEEeCCHHHHHHHHHHHhCCC-------
Confidence 33444444444322 333455545555 5567777764 4799999999999888776311
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++..+|.+...++...|+ +++.++++++ ++.+|+++|+++|+++ +.+|+ +++++|...
T Consensus 74 ---~gd~Vi~~~~~~~~~~~~~~~~G~---~~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~~~~G~~~ 137 (367)
T 3nyt_A 74 ---PGDEVITPGFTYVATAETVALLGA---KPVYVDIDPR-TYNLDPQLLEAAITPR------TKAII---PVSLYGQCA 137 (367)
T ss_dssp ---TTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTT-TCSBCGGGTGGGCCTT------EEEEC---CBCGGGCCC
T ss_pred ---CcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCc-cCCcCHHHHHHhcCcC------CcEEE---eeCCccChh
Confidence 567888999999999999999999 9999999863 4799999999998543 33444 667899999
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeec--cccccCCCCcceEEEeeCchHHHHHhcCCc
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLN--AHKWFFTTLDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~--~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
|+++|.++|++||+++|+|++|+.+........ +. ..|.++++ +||+++++..+|+++.+++...........
T Consensus 138 ~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~----~~-~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~ 212 (367)
T 3nyt_A 138 DFDAINAIASKYGIPVIEDAAQSFGASYKGKRS----CN-LSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIAR 212 (367)
T ss_dssp CHHHHHHHHHHTTCCBEEECTTTTTCEETTEET----TS-SSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTB
T ss_pred hHHHHHHHHHHcCCEEEEECccccCCeECCeec----cC-CCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHh
Confidence 999999999999999999999975443322111 11 12777777 599998744477777766655432211110
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC-----
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN----- 400 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----- 400 (486)
+ .. ...+.......+.+...+.+++.+..+ +.+++..++..++++++.+.|+++ ++.+...+.
T Consensus 213 -~--g~------~~~~~~~~~g~~~~~~~~~aa~~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~ 280 (367)
T 3nyt_A 213 -H--GQ------DRRYHHIRVGVNSRLDTLQAAILLPKL--EIFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISV 280 (367)
T ss_dssp -T--TE------EETTEECSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECC
T ss_pred -c--CC------CcCceeeccCcCCCccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCcee
Confidence 0 00 000000011112233445555544443 566778888999999999999987 455432221
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee--------EC------------CEeEEEEEecC
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM--------VA------------GIYFIRFAVGA 460 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~------------~~~~lR~~~~~ 460 (486)
...+.+... . ...+.+.|.++|+.+-.... +. ....+|+.+ +
T Consensus 281 ~~~~~~~~~-~----------------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~-~ 342 (367)
T 3nyt_A 281 YAQYTVRMD-N----------------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPM-H 342 (367)
T ss_dssp CSSEEEECS-S----------------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECC-C
T ss_pred eEEEEEEeC-C----------------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccC-C
Confidence 112333322 1 23566667777874221110 00 135789987 6
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~ 478 (486)
+.+|++||+++++.|++-
T Consensus 343 ~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 343 PYLDTASIKIICAALTNL 360 (367)
T ss_dssp TTCCHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 899999999999999763
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=196.09 Aligned_cols=337 Identities=12% Similarity=0.049 Sum_probs=214.6
Q ss_pred HHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 88 GFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 88 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
..+.+.+...+... ...|.......++++.+.+++.+.+|.+... ....++|+||++++..++.+...
T Consensus 39 ~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~----~~~i~~~~g~~~a~~~~~~~~~~------- 107 (410)
T 3e2y_A 39 SYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDP----NEEILVAVGAYGSLFNSIQGLVD------- 107 (410)
T ss_dssp HHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT----TTSEEEESHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCC----CCCEEEeCCcHHHHHHHHHHhcC-------
Confidence 34455555554432 2344444446789999999999998875320 02689999999999888776643
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC---------CCCcccCHHHHHHHHHHHHHCCCccEEEEee
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK---------SSSFTLTPESLQAAIDLDIQAGLIPLFLCAT 237 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~---------~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~ 237 (486)
++..|+++..+|.++...++..|. +++.+|++. ..++.+|+++|++++++. +.+|+++
T Consensus 108 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~ 174 (410)
T 3e2y_A 108 ----PGDEVIIMVPFYDCYEPMVRMAGA---VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILN 174 (410)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTT------EEEEEEE
T ss_pred ----CCCEEEEeCCCchhhHHHHHHcCC---EEEEEeccccccccccccccCCcCCHHHHHhhcCCC------ceEEEEe
Confidence 566788888999999999999999 999999862 135679999999988542 4578888
Q ss_pred cCCcccccc---CCchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccC-CCCcceEEEe
Q 038818 238 VGTTAITTV---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFF-TTLDCCCLWV 311 (486)
Q Consensus 238 ~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~ 311 (486)
.++|++|.+ +++++|+++|++||+++++|++|+.+.......... +......+.+..+++|+++ ....+|+++.
T Consensus 175 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~ 254 (410)
T 3e2y_A 175 TPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIG 254 (410)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEEC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEE
Confidence 999999999 679999999999999999999997644321111111 1111123466778899998 4566888877
Q ss_pred eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---------chHHHHHHHHHHHHHHHH
Q 038818 312 KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---------GVANLRNFLRSHVRMAQL 382 (486)
Q Consensus 312 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---------g~~g~~~~~~~~~~~a~~ 382 (486)
+++ .... +....... +-....+...++...+ ..+.++++.++..+++++
T Consensus 255 ~~~-~~~~-~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (410)
T 3e2y_A 255 PAH-LIKH-LQTVQQNS--------------------FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDR 312 (410)
T ss_dssp CHH-HHHH-HHHHHHTT--------------------TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHH
T ss_pred CHH-HHHH-HHHHHHhh--------------------ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Confidence 543 2221 11000000 0001222222222222 245678888889999999
Q ss_pred HHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeEC-------CEeEE
Q 038818 383 FQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMVA-------GIYFI 454 (486)
Q Consensus 383 l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~-------~~~~l 454 (486)
+.+.|+++ ++++..+.....+.+.+........+..... ....++.+.+ .+.|+.+.++..+. +.+++
T Consensus 313 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~i 388 (410)
T 3e2y_A 313 MVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDE---PYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLV 388 (410)
T ss_dssp HHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSC---CHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEE
T ss_pred HHHHHHHC-CCeecCCCccEEEEEEchhhhcccccccccc---cCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEE
Confidence 99999998 8887655444445555543110000000000 0112344444 35587544443332 24789
Q ss_pred EEEecCCCCcHHHHHHHHHHHHH
Q 038818 455 RFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 455 R~~~~~~~tt~~did~~i~~l~~ 477 (486)
|+++.. ++++|+++++.|++
T Consensus 389 Ris~~~---~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 389 RFCFIK---KDSTLDAAEEIFRA 408 (410)
T ss_dssp EEECCC---CHHHHHHHHHHHHT
T ss_pred EEEEcC---CHHHHHHHHHHHHh
Confidence 999843 88899999999875
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-20 Score=188.39 Aligned_cols=326 Identities=12% Similarity=0.052 Sum_probs=206.2
Q ss_pred HHHHHHHHHhhcCCCcccccc-ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMS-SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~-~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
|..+.+.+...+..+ .|.. ++...+++ +.+++++|.+ .+++|+|||+|+..++.+..
T Consensus 31 p~~~~~a~~~~~~~~--~y~~~~~~~~~l~----~~la~~~~~~---------~v~~~~ggt~al~~~l~~l~------- 88 (424)
T 2po3_A 31 RARLYERLDRALDSQ--WLSNGGPLVREFE----ERVAGLAGVR---------HAVATCNATAGLQLLAHAAG------- 88 (424)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSCHHHHHHH----HHHHHHHTSS---------EEEEESCHHHHHHHHHHHHT-------
T ss_pred hHHHHHHHHHHHhcC--CcccCCHHHHHHH----HHHHHHhCCC---------eEEEeCCHHHHHHHHHHHcC-------
Confidence 334455555544332 2433 44444444 5566666653 57999999999988877652
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..+|.++..++...|+ +++.+|+++ +++.+|+++|++++++. +.+|+++ +++|.
T Consensus 89 -----~gd~Vlv~~~~~~~~~~~~~~~G~---~~~~v~~~~-~~~~~d~~~l~~~i~~~------~~~v~~~---~~tG~ 150 (424)
T 2po3_A 89 -----LTGEVIMPSMTFAATPHALRWIGL---TPVFADIDP-DTGNLDPDQVAAAVTPR------TSAVVGV---HLWGR 150 (424)
T ss_dssp -----CCSEEEEESSSCTHHHHHHHHTTC---EEEEECBCT-TTSSBCHHHHGGGCCTT------EEEEEEE---CGGGC
T ss_pred -----CCCEEEECCCccHHHHHHHHHcCC---EEEEEecCC-CcCCcCHHHHHHhhCcC------CcEEEEE---CCCCC
Confidence 346788899999999999999999 999999985 35789999999988642 3455554 37899
Q ss_pred cCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccc--cccCCCCcceEEEeeCchHHHHHhcC
Q 038818 246 VDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAH--KWFFTTLDCCCLWVKNPNALIKALST 323 (486)
Q Consensus 246 idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~h--K~l~~p~~~g~~~~~~~~~~~~~~~~ 323 (486)
+.|+++|.++|+++|+++++|++|+.+..+.. +. +. ...|.++.++| |++++ ..+|+++.++++........
T Consensus 151 ~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~--~~-~~--~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~ 224 (424)
T 2po3_A 151 PCAADQLRKVADEHGLRLYFDAAHALGCAVDG--RP-AG--SLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRAL 224 (424)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTCTTCEETT--EE-TT--SSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCEEEEECccccCCeECC--ee-cc--cccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999984333221 11 11 12467777766 87766 55677777655543322111
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC---
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN--- 400 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--- 400 (486)
.. +.... .+... ......+...+.++.++.. .+++++..++..++++++.+.|++++++++..++.
T Consensus 225 ~~-~~~~~------~~~~~--~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 293 (424)
T 2po3_A 225 HN-FGFDL------PGGSP--AGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGL 293 (424)
T ss_dssp HB-TTTTC------TTCCT--TCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSC
T ss_pred Hh-cCccc------ccccc--ccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCc
Confidence 00 00000 00000 0111223344555555543 46778888899999999999999988998875332
Q ss_pred --eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-C--------C------Ee-------EEEE
Q 038818 401 --FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-A--------G------IY-------FIRF 456 (486)
Q Consensus 401 --~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~--------~------~~-------~lR~ 456 (486)
..++.+.+.+.. .+....++.+.|.+.|+.+ .+... . + .. .+|+
T Consensus 294 ~~~~~~~i~~~~~~-----------~~~~~~~l~~~L~~~gI~v-~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l 361 (424)
T 2po3_A 294 NNHQYVIVEIDEAT-----------TGIHRDLVMEVLKAEGVHT-RAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSL 361 (424)
T ss_dssp CCCCCEEEEECHHH-----------HSSCHHHHHHHHHHTTEEC-BCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEE
T ss_pred cccEEEEEEECCcc-----------chhhHHHHHHHHHHCCCce-ecccCCccccchhhhhcCCCCChhHHHHhcCEEEe
Confidence 245556554200 0001235666777778743 22100 0 0 01 2777
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 457 AVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 457 ~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++ +..++++|+++++++|++++++.
T Consensus 362 ~~-~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 362 PT-GTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp CC-STTCCHHHHHHHHHHHHHHHHHH
T ss_pred eC-CCCCCHHHHHHHHHHHHHHHhhh
Confidence 65 57889999999999999887654
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=186.37 Aligned_cols=282 Identities=14% Similarity=0.135 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH----H
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA----A 189 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a----~ 189 (486)
...++++.+++++|.+ . . +++++||+|+..++.++.. ++..|+++...|.++... +
T Consensus 53 ~~~~l~~~la~~~~~~-~-------~-i~~~sGt~a~~~~~~~~~~-----------~g~~vl~~~~~~~~~~~~~~~~~ 112 (386)
T 1cs1_A 53 TRDVVQRALAELEGGA-G-------A-VLTNTGMSAIHLVTTVFLK-----------PGDLLVAPHDCYGGSYRLFDSLA 112 (386)
T ss_dssp HHHHHHHHHHHHHTCS-E-------E-EEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCC-c-------E-EEeCCHHHHHHHHHHHHhC-----------CCCEEEEecCCcHhHHHHHHHHH
Confidence 3445556778888775 2 3 4445669999888776532 566788888999885554 3
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
+..|+ +++.+|.+ |+++|+++|+++ +.+|+++.++|++|.+.|+++|+++|++||+++|+|++|
T Consensus 113 ~~~g~---~~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~ 176 (386)
T 1cs1_A 113 KRGCY---RVLFVDQG-------DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF 176 (386)
T ss_dssp TTTSC---EEEEECTT-------CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HhcCC---EEEEeCCC-------CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 55677 88888753 899999999753 347888999999999999999999999999999999999
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccCCCCcc--eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC--CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~--g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
+++....+ .. .+.|.++.++||++++|.+. |++++++++...........+
T Consensus 177 ~~~~~~~~-~~------~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------------------- 229 (386)
T 1cs1_A 177 LSPALQNP-LA------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------------------- 229 (386)
T ss_dssp TCTTTCCG-GG------GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--------------------
T ss_pred cccccCCc-cc------cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc--------------------
Confidence 87654322 11 26899999999999988763 888887744432211100000
Q ss_pred CCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C----------------CCeeEEEEEeec
Q 038818 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P----------------RNFAVVCFRVLP 410 (486)
Q Consensus 348 ~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~----------------~~~~~v~f~~~~ 410 (486)
+.....+..+.+++.+ +.+.+..++..++++++.+.|++++.+.-.. + ...++++|.+..
T Consensus 230 -~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (386)
T 1cs1_A 230 -GVTGGAFDSYLLLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_dssp -TCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred -CCCCCHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC
Confidence 0011334445444433 4456677778888999999998887664331 1 126788888653
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC---------------------------CEeEEEEEecCCCC
Q 038818 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA---------------------------GIYFIRFAVGATLT 463 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---------------------------~~~~lR~~~~~~~t 463 (486)
. ...+.+.+.+.|++. ....+. ..+++|+++. ..+
T Consensus 307 ~----------------~~~~~~~l~~~gi~~-~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~ 368 (386)
T 1cs1_A 307 D----------------EQTLRRFLGGLSLFT-LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IED 368 (386)
T ss_dssp C----------------HHHHHHHHHTCSSSE-EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSC
T ss_pred C----------------HHHHHHHHHhCCcce-EcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCC
Confidence 1 234555666778743 211000 1368999995 477
Q ss_pred cHHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEKL 479 (486)
Q Consensus 464 t~~did~~i~~l~~~~ 479 (486)
++++|+.+.++|+++.
T Consensus 369 ~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 369 GEDLIADLENGFRAAN 384 (386)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7778888888887653
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=196.31 Aligned_cols=355 Identities=14% Similarity=0.078 Sum_probs=201.5
Q ss_pred CcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTL 154 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al 154 (486)
.|+++.++.+. +. +.+.+...+......|...+...++ ++++++++|.+ .+++|+|||+|+..++
T Consensus 44 ~ylD~~~~~~~-~~-v~~a~~~~~~~~~~~y~~~~~~~~l----~~~la~~~~~~---------~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 44 VYIDLLTDSGT-NA-MSDHQWAAMITGDEAYAGSRNYYDL----KDKAKELFNYD---------YIIPAHQGRGAENILF 108 (467)
T ss_dssp CSEECSCSSSC-CC-EEHHHHHHHHTCCCCSSSCHHHHHH----HHHHHHHHCCC---------EEEEESSHHHHHHHHH
T ss_pred eeeecccCcCC-HH-HHHHHHHHHhhcccccccCccHHHH----HHHHHHHcCCC---------cEEEcCCcHHHHHHHH
Confidence 47777654333 22 2233333332222245444544444 45677777752 5899999999999999
Q ss_pred HHHHHHHHHHccccCCCCeE---EEecCCCch-HHHHHHHHcCCCCCCeEEEecCC----C----CCcccCHHHHHHHHH
Q 038818 155 AAARDQILNEIGRENISRLV---VYGSDQTHS-ALQKAAQIAGIDPKNFRAIKTTK----S----SSFTLTPESLQAAID 222 (486)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~---v~~s~~~H~-s~~~a~~~~G~g~~~v~~v~~d~----~----~~~~~d~~~L~~~l~ 222 (486)
.+++..... ++.. |+++ ..|+ +...++...|. +++.++.+. + .++.+|+++|+++|+
T Consensus 109 ~~~~~~~~~-------~Gd~~~~viv~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~ 177 (467)
T 1ax4_A 109 PVLLKYKQK-------EGKAKNPVFIS-NFHFDTTAAHVELNGC---KAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 177 (467)
T ss_dssp HHHHHHHHH-------TTCCSSCEEEE-SSCCHHHHHHHHHTTC---EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHH
T ss_pred HHHHHhhcc-------CCCccceEEEe-ccccchhhHHHhccCC---ceecccccccccccccCCcccccCHHHHHHHHH
Confidence 988763211 1222 4555 5664 45667788888 777665431 0 135799999999998
Q ss_pred HHHHCCCccEEEEeecCCccc-ccc---CCchHHHHHHHHhCceEEeeccccc-hhcc--------Cc-cchhhhcC-CC
Q 038818 223 LDIQAGLIPLFLCATVGTTAI-TTV---DPLGPLCDIAKRYSIWVHVDAAYAG-SACI--------CP-EFRHFIDG-IE 287 (486)
Q Consensus 223 ~~~~~g~~p~~vv~~~gtt~~-G~i---dpl~~I~~i~~~~g~~lhvD~a~g~-~~~~--------~~-~~~~~~~~-~~ 287 (486)
+.. ...+.+|+++.++|++ |.+ +++++|+++|++||+|+|+|++++. +..+ .+ ........ ..
T Consensus 178 ~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (467)
T 1ax4_A 178 QHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK 255 (467)
T ss_dssp HHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGG
T ss_pred hcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhcc
Confidence 642 0124578888899999 665 5688999999999999999998654 1111 00 00110000 02
Q ss_pred CCCceeeccccccCCCCcceEEEeeCc-hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc-hHHHHHHHHhc
Q 038818 288 GADSFSLNAHKWFFTTLDCCCLWVKNP-NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA-LKLWLVLRSFG 365 (486)
Q Consensus 288 ~aDsi~~~~hK~l~~p~~~g~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~-l~~~~~l~~~g 365 (486)
.+|++++++||+++.|.| |+++.+++ +...........+ ... . . ..+..... .++..++...-
T Consensus 256 ~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~-~~~-~---------~---~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 256 YADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM-EGF-V---------T---YGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp GCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH-TCS-T---------T---TTTCCHHHHHHHHHHHHHTT
T ss_pred ccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc-ccc-c---------c---cCCccchHHHHHHHHHHHhh
Confidence 578999999999987744 56666645 5443221111111 000 0 0 00111011 11111233221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEe
Q 038818 366 VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVS 444 (486)
Q Consensus 366 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~ 444 (486)
+ .+.+++..++++++.+.|++ +++++..+.....+.+....-..... .. +....++.+.| .+.|+.+..
T Consensus 321 -~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~l~~~L~~~~gv~v~~ 390 (467)
T 1ax4_A 321 -E--EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQIP----GD--QFPAQAVINALYLESGVRAVE 390 (467)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTSC----GG--GCHHHHHHHHHHHHHCEECEE
T ss_pred -h--hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccccc----cC--CCCHHHHHHHHHHhcCceeee
Confidence 1 22444555778889999987 47777655555555555211000000 00 11134567777 677875443
Q ss_pred eeeE-------------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 445 HGMV-------------AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 445 ~~~~-------------~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+.. ....++|+++....+|++||+++++.|+++++++
T Consensus 391 ~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 391 IGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp ESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 1211 0136899998544588999999999999887664
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-20 Score=186.56 Aligned_cols=318 Identities=13% Similarity=0.058 Sum_probs=196.8
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc-
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH- 182 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H- 182 (486)
.|..++...++++ .+++++|.+ .+++|+|||+|+..++.++.. +++ +++..+|
T Consensus 70 ~y~~~~~~~~l~~----~la~~~~~~---------~~~~~~~gt~a~~~al~~l~~-----------~gd--i~~~~~~~ 123 (456)
T 2ez2_A 70 AYAGSENFYHLER----TVQELFGFK---------HIVPTHQGRGAENLLSQLAIK-----------PGQ--YVAGNMYF 123 (456)
T ss_dssp CSSSCHHHHHHHH----HHHHHHCCS---------EEEEESSHHHHHHHHHHHHCC-----------TTC--EEEESSCC
T ss_pred hcccChhHHHHHH----HHHHHhCCC---------cEEEeCCcHHHHHHHHHHhCC-----------CCC--Eecccccc
Confidence 4555555555554 566666653 579999999999888877632 344 4456677
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCC----C----CcccCHHHHHHHHHHHHHCCCccEEEEeecCCc-cccccCC---ch
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKS----S----SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTT-AITTVDP---LG 250 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~----~----~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt-~~G~idp---l~ 250 (486)
.+...++...|. +++.++++++ . ++.+|+++|+++|++.+. ..+.+|+++.++| ++|.+-| ++
T Consensus 124 ~~~~~~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~ 198 (456)
T 2ez2_A 124 TTTRYHQEKNGA---VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMR 198 (456)
T ss_dssp HHHHHHHHHTTC---EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred chhHHHHHHcCC---EEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHH
Confidence 777888999999 9999988731 1 268999999999987541 1235677787777 8998866 99
Q ss_pred HHHHHHHHhCceEEeeccccch---------hccCccch-h---hhcCCCCCCceeeccccccCCCCcceEEEeeCchHH
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGS---------ACICPEFR-H---FIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNAL 317 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~---------~~~~~~~~-~---~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~ 317 (486)
+|+++|++||+++|+|++|+.+ ..+..... . .+. ...|.+++++||+++.| .+|+++.++++..
T Consensus 199 ~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~ 275 (456)
T 2ez2_A 199 AVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF--SYADGCTMSGKKDCLVN-IGGFLCMNDDEMF 275 (456)
T ss_dssp HHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH--TTCSEEEEETTTTTCCS-SCEEEEESCHHHH
T ss_pred HHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhc--ccCCEEEEeCcccCCCC-ceeEEEECCHHHH
Confidence 9999999999999999999763 11111110 0 011 24688888899998755 4677776565543
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANL-RNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
.........+... ....+.....+.. +++... +.+ ++..++..++++++.+.|++. ++++.
T Consensus 276 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~a-~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 337 (456)
T 2ez2_A 276 SSAKELVVVYEGM--------------PSYGGLAGRDMEA-MAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIV 337 (456)
T ss_dssp HHHHHHHHHHTCC--------------TTTTTCCHHHHHH-HHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred HHHHHHHhhccCc--------------ccccCcchhHHHH-HHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCccc
Confidence 3221111111000 0000101111111 011111 233 466677788889999999875 77766
Q ss_pred cCCCeeEEEEEeec--CCCCCCCCCCccchHHH-HHHHHHHH-HhcCcEEEeeee-------------ECCEeEEEEEec
Q 038818 397 APRNFAVVCFRVLP--SASGLGDGKANEGANEL-NRKLLESI-NASGQLYVSHGM-------------VAGIYFIRFAVG 459 (486)
Q Consensus 397 ~~~~~~~v~f~~~~--~~~~~~~~~~~~~~~~~-~~~l~~~l-~~~g~~~~~~~~-------------~~~~~~lR~~~~ 459 (486)
.+.....+.+.+.. ... ...++ .+.+.+.| .+.|+..+.... ..+..++|+++.
T Consensus 338 ~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~ 408 (456)
T 2ez2_A 338 EPVGGHAVFLDARRFCEHL---------TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIP 408 (456)
T ss_dssp SSCCSSEEEEEHHHHTTTS---------CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred cCCCceEEEEEhHHhcCCC---------ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeC
Confidence 55444555555431 110 01222 34556666 466875443221 112468999986
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~l 482 (486)
...+++++|+++++.|++++++.
T Consensus 409 ~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 409 RRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 43378899999999999988764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-21 Score=190.67 Aligned_cols=307 Identities=11% Similarity=0.080 Sum_probs=197.2
Q ss_pred ChhhHHHHHHHHHHH-HHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHH-HHHHHHHccccCCCCeEEEecCCCchHH
Q 038818 108 SPAATELENIVMDWL-GEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAA-RDQILNEIGRENISRLVVYGSDQTHSAL 185 (486)
Q Consensus 108 ~~~~~~le~~~~~~l-~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a-~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 185 (486)
+|...++|+. + ++++|.. . ..++++|||+|+..++.+. .. +++.|+++..+|.+.
T Consensus 35 ~~~~~~l~~~----~~a~~~g~~-~-------~~v~~~sgt~al~~al~~l~~~-----------~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 35 GPINQRFEQT----IMSGFFQNR-G-------AVTTVANATLGLMAAIQLKKRK-----------KGKYALMPSFTFPAT 91 (377)
T ss_dssp CHHHHHHHHH----HHHHTSTTC-S-------EEEEESCHHHHHHHHHHHHSCT-----------TCCEEEEESSSCTHH
T ss_pred CHHHHHHHHH----HHHHHhCCC-C-------eEEEeCCHHHHHHHHHHHcCCC-----------CcCEEEECCCCcHHH
Confidence 5665666654 6 7777732 2 5799999999998887765 22 677899999999999
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHH-HHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAID-LDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~-~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
..++...|+ +++.+++++ ++|.+|+++|++++. +.. .+.+|+ +++++|.+.|+++|.++|+ +|+++|
T Consensus 92 ~~~~~~~G~---~~~~v~~~~-~~~~~d~~~l~~~i~~~~~----~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi 159 (377)
T 3ju7_A 92 PLAAIWCGL---EPYFIDISI-DDWYMDKTVLWDKIEELKE----EVAIVV---PYATFGSWMNLEEYEELEK-KGVPVV 159 (377)
T ss_dssp HHHHHHTTC---EEEEECBCT-TTCSBCHHHHHHHHHHHGG----GEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBE
T ss_pred HHHHHHcCC---EEEEEecCC-ccCCcCHHHHHHHHhcCCC----CceEEE---EECCCCCccCHHHHHHHHh-cCCEEE
Confidence 999999999 999999985 368999999999984 430 123444 4567899999999999999 999999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
+|+||+.+..... +..-.....++.+++++||+++++ ..|+++++++....+...... +-... .+.
T Consensus 160 ~D~a~a~g~~~~~--~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~-~g~~~--------~~~-- 225 (377)
T 3ju7_A 160 VDAAPGFGLMNGG--MHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGN-FGFDT--------NRE-- 225 (377)
T ss_dssp EECTTCTTCEETT--EETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTB-TTBCT--------TSC--
T ss_pred EECCCccCCeECC--EeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHh-cCCCC--------CCc--
Confidence 9999975543221 110011124556677789999874 567777777655432211110 00000 000
Q ss_pred cccCCC--CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-ecCCC----ee-EEEEEeecCCCCCC
Q 038818 345 QITLSR--RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI-VAPRN----FA-VVCFRVLPSASGLG 416 (486)
Q Consensus 345 ~~~~sr--~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~~~~~----~~-~v~f~~~~~~~~~~ 416 (486)
....+. +...+.++..+.. .+.+.+..++..++++++.+.|++++++.+ +.++. .. .+.+.+...
T Consensus 226 ~~~~g~~~~~~~~~aa~~~~~--l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 298 (377)
T 3ju7_A 226 CTMMGFNCKMSEYAAAIGIAT--MKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE----- 298 (377)
T ss_dssp BCSSCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT-----
T ss_pred eeeccccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh-----
Confidence 111121 2334444444443 477888899999999999999998865422 11111 11 234443321
Q ss_pred CCCCccchHHHHHHHHHHHHhcCcEEEeee--eE------C-------------CEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 417 DGKANEGANELNRKLLESINASGQLYVSHG--MV------A-------------GIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~------~-------------~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
.....+.+.|.++|+..-... .. . ....+|+.+ ++.+|++|++++++.|
T Consensus 299 ---------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~-~~~~t~~di~~v~~~l 368 (377)
T 3ju7_A 299 ---------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPL-WEGMTKEIVEQIVICL 368 (377)
T ss_dssp ---------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECC-CTTCCHHHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCC-CCCCCHHHHHHHHHHH
Confidence 013467778888887422111 00 0 135799987 6889999999999999
Q ss_pred HHHHH
Q 038818 476 QEKLD 480 (486)
Q Consensus 476 ~~~~~ 480 (486)
++++.
T Consensus 369 ~~~~~ 373 (377)
T 3ju7_A 369 GQKVV 373 (377)
T ss_dssp TC---
T ss_pred HHHHh
Confidence 87764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=189.56 Aligned_cols=333 Identities=8% Similarity=-0.023 Sum_probs=210.4
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
+..+.+.+..........|....+..++++.+.+|+.+..+.+.. ..+++|+||++|+..++.+..+
T Consensus 58 ~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~------~~i~~t~g~~~al~~~~~~l~~------- 124 (418)
T 3rq1_A 58 LKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGH------IRSIATAGGTGGIHHLIHNYTE------- 124 (418)
T ss_dssp CHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSE------EEEEEESHHHHHHHHHHHHHSC-------
T ss_pred cHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCcccc------ccEEECCchHHHHHHHHHHhcC-------
Confidence 334555555544323344555555788899988988877664321 2689999999999888776543
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecC-Cccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVG-TTAITT 245 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~G~ 245 (486)
+++.|+++..+|.++...++..|. +++.+|+++. ++.+|+++|++++++..... ...+++++.+ +|++|.
T Consensus 125 ----~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~ 195 (418)
T 3rq1_A 125 ----PGDEVLTADWYWGAYRVICSDTGR---TLVTYSLFDE-HNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGY 195 (418)
T ss_dssp ----TTCEEEEESSCCTHHHHHHHHTTC---EEEEECSBCT-TSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCC
T ss_pred ----CCCEEEECCCCchhHHHHHHHcCC---EEEEEeeeCC-CCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCC
Confidence 567888899999999999999999 9999998643 47999999999998642211 1236777777 999999
Q ss_pred cCCchHHH---HHHH------HhCceEEeeccccchhccCccchhhhcCCCC--CC---ceeeccccccCCC-CcceEEE
Q 038818 246 VDPLGPLC---DIAK------RYSIWVHVDAAYAGSACICPEFRHFIDGIEG--AD---SFSLNAHKWFFTT-LDCCCLW 310 (486)
Q Consensus 246 idpl~~I~---~i~~------~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~--aD---si~~~~hK~l~~p-~~~g~~~ 310 (486)
+-|.+++. ++|+ +||+++++|++|.++................ -| .++.+++|.++.| ..+|+++
T Consensus 196 ~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~ 275 (418)
T 3rq1_A 196 SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMI 275 (418)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEE
T ss_pred CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEE
Confidence 98865555 5555 8999999999996654211111111111111 23 4566899998744 5678877
Q ss_pred e--eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchH--------HHHHHHHHHHHHH
Q 038818 311 V--KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVA--------NLRNFLRSHVRMA 380 (486)
Q Consensus 311 ~--~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~--------g~~~~~~~~~~~a 380 (486)
. ++++.... +.....+.... .......+...+....+... ...++.++..+++
T Consensus 276 ~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
T 3rq1_A 276 GISDDEEIADE-FFEVNKSTSRA----------------TWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRA 338 (418)
T ss_dssp EEESSHHHHHH-HHHHHHHHHHH----------------HTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHH-HHHHHHHHHhh----------------ccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 34444332 21101111000 00011233334444433221 2335556777888
Q ss_pred HHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecC
Q 038818 381 QLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGA 460 (486)
Q Consensus 381 ~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~ 460 (486)
+++.+.|+++ ++++. ++..+.+.|.-.+. ..++.+.|.++|+.+.++ ..++|+++.
T Consensus 339 ~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~----------------~~~~~~~l~~~gi~v~~g-----~~~iRis~~- 394 (418)
T 3rq1_A 339 DIFKQEAAQV-GLPML-PYRGGFFITIPTDS----------------ANAICEELKKEHIYVIAL-----ANGIRIAAC- 394 (418)
T ss_dssp HHHHHHHHHH-TCCCC-CCCSSSEEEEECTT----------------HHHHHHHHHHTTEECEEC-----SSEEEEEGG-
T ss_pred HHHHHHHHhc-CCCCC-CCCceEEEEcCCCC----------------HHHHHHHHHhCCEEEecC-----CCCeEEEEe-
Confidence 8899999877 77765 44445544422111 234566677778754332 357999974
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~ 483 (486)
..++++|+++++.|+++++++.
T Consensus 395 -~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 395 -GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp -GSCHHHHTTHHHHHHHHHHHTT
T ss_pred -cCCHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999988764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-20 Score=187.49 Aligned_cols=323 Identities=9% Similarity=0.051 Sum_probs=209.0
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCC-CCCccCCCc-ceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLP-KSFLFSGTG-GGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~-~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
..+.+.+...+. ....|.......++++.+.+|+.+.+|.+ .. .. ..++|+||++++..++.+.+.
T Consensus 46 ~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-----~~~~i~~t~g~~~al~~~~~~~~~------ 113 (396)
T 3jtx_A 46 KVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVD-----ADNEILPVLGSREALFSFVQTVLN------ 113 (396)
T ss_dssp HHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC-----TTTSEEEESSHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC-----CCCeEEEcCCcHHHHHHHHHHHhC------
Confidence 345555555443 23344444446789999999999999975 21 12 689999999999888776643
Q ss_pred cccCCCC-----eEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCC
Q 038818 166 GRENISR-----LVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGT 240 (486)
Q Consensus 166 ~~~~~~~-----~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gt 240 (486)
++ +.|+++..+|.++..+++..|. +++.+|+++ +.+.+|+++|++++++. +.+|+++.++
T Consensus 114 -----~g~~~~~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~-~g~~~d~~~l~~~~~~~------~~~v~l~~p~ 178 (396)
T 3jtx_A 114 -----PVSDGIKPAIVSPNPFYQIYEGATLLGGG---EIHFANCPA-PSFNPDWRSISEEVWKR------TKLVFVCSPN 178 (396)
T ss_dssp -----C---CCCCEEEEEESCCHHHHHHHHHTTC---EEEEEECCT-TTCCCCGGGSCHHHHHT------EEEEEEESSC
T ss_pred -----CCCccCCCEEEEcCCCcHhHHHHHHHcCC---EEEEeecCC-CCCccCHHHHHHhhccC------cEEEEEECCC
Confidence 32 5788888999999999999999 999999964 34688999999999763 4477778999
Q ss_pred ccccccCCchH---HHHHHHHhCceEEeeccccchhccCccchhhhc------CCCCCCceeeccccccC-CCCcceEEE
Q 038818 241 TAITTVDPLGP---LCDIAKRYSIWVHVDAAYAGSACICPEFRHFID------GIEGADSFSLNAHKWFF-TTLDCCCLW 310 (486)
Q Consensus 241 t~~G~idpl~~---I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~------~~~~aDsi~~~~hK~l~-~p~~~g~~~ 310 (486)
|++|.+-|.++ |+++|++||+++++|++|+.+..........+. .-...+.+..+++|.++ ....+|+++
T Consensus 179 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (396)
T 3jtx_A 179 NPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVA 258 (396)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEE
Confidence 99999976554 999999999999999999764332101111110 01245677889999765 445678776
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
. ++..... +.....+. +.....+...++...+ ..+.+.+..++..++.+++.+.|++
T Consensus 259 ~-~~~~~~~-~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 316 (396)
T 3jtx_A 259 G-DAELLKN-FLLYRTYH--------------------GSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQ 316 (396)
T ss_dssp E-CHHHHHH-HHHHHHHH--------------------TCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred e-CHHHHHH-HHHHHhhc--------------------ccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 4433322 21100000 0011223333333332 2456778888888999999999987
Q ss_pred CCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeE--------CCEeEEEEEecC
Q 038818 390 DNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMV--------AGIYFIRFAVGA 460 (486)
Q Consensus 390 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--------~~~~~lR~~~~~ 460 (486)
. +.+..+.....+.+.+.... ...+.+.|. +.|+.+.++..+ .+..++|++++.
T Consensus 317 ~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~ 379 (396)
T 3jtx_A 317 V--FDVKLPDASFYIWLKVPDGD---------------DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA 379 (396)
T ss_dssp T--SCCCCCSSSSEEEEECTTSC---------------HHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS
T ss_pred c--CCccCCCeeEEEEEECCCCC---------------HHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC
Confidence 5 33333333334444543210 234555554 458754433222 235789999853
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~ 479 (486)
++++|+++++.|.+++
T Consensus 380 ---~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 380 ---DVATCVKAAEDIVSLY 395 (396)
T ss_dssp ---CHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHHHh
Confidence 7889999999998763
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-21 Score=192.91 Aligned_cols=240 Identities=14% Similarity=0.085 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----HHH
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK----AAQ 190 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~----a~~ 190 (486)
..++.+++++++|.+ ..+++++|++|+..++.+... +++.|+++...|.+... .+.
T Consensus 84 ~~~le~~lA~l~g~~---------~~v~~~sG~~Ai~~al~al~~-----------~Gd~Vi~~~~~y~~~~~~~~~~~~ 143 (430)
T 3ri6_A 84 VEDLEQRLKNLTGAL---------GVLALGSGMAAISTAILTLAR-----------AGDSVVTTDRLFGHTLSLFQKTLP 143 (430)
T ss_dssp HHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHHHHHHHHH
Confidence 344556788888875 357788889998877776533 67788889999988766 667
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecccc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g 270 (486)
..|+ +++.+|.+ |+++|+++|++. +.+|+++.++|++|.+.|+++|+++|+++|+++++|++|+
T Consensus 144 ~~G~---~~~~v~~~-------d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~ 207 (430)
T 3ri6_A 144 SFGI---EVRFVDVM-------DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMT 207 (430)
T ss_dssp HTTC---EEEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTS
T ss_pred HcCC---EEEEeCCC-------CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 8898 88888764 899999998653 4578899999999999999999999999999999999998
Q ss_pred chhccCccchhhhcCCCCCCceeeccccccCCC--CcceEEEeeCchHH---------HHHhcCCcccccCccCCCCCcc
Q 038818 271 GSACICPEFRHFIDGIEGADSFSLNAHKWFFTT--LDCCCLWVKNPNAL---------IKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p--~~~g~~~~~~~~~~---------~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
.+....+. . .++|.++.+++|++++| ..+|+++++....+ .+.+.. ..|+....
T Consensus 208 ~~~~~~~~--~-----~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~-~~~i~~~~------- 272 (430)
T 3ri6_A 208 PPYLLEAK--R-----LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP-MAFLYKAR------- 272 (430)
T ss_dssp CTTTCCGG--G-----GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG-GHHHHHHH-------
T ss_pred ccccCChH--H-----cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch-hhHHHHHH-------
Confidence 66543221 1 26899999999999876 24555554433111 000000 00000000
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC----------------ee-
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN----------------FA- 402 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----------------~~- 402 (486)
..+....+.....+.+|..++ |.+.+..++++..+++.++.+.|+++|+++.+..|. .+
T Consensus 273 --~~~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~ 348 (430)
T 3ri6_A 273 --KEVFQNLGPSLSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGS 348 (430)
T ss_dssp --HTHHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred --HHHHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCce
Confidence 000001122234556666655 557788888999999999999999999988554333 34
Q ss_pred EEEEEee
Q 038818 403 VVCFRVL 409 (486)
Q Consensus 403 ~v~f~~~ 409 (486)
+++|.+.
T Consensus 349 ~lsf~l~ 355 (430)
T 3ri6_A 349 ILTFELE 355 (430)
T ss_dssp EEEEECS
T ss_pred EEEEEEC
Confidence 8888886
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-20 Score=188.09 Aligned_cols=323 Identities=12% Similarity=0.085 Sum_probs=204.8
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCC-cc-CCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSF-LF-SGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~-~~-~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
|....+..++.+.+.+++++.+|.+... .. .+....++|+|+++++..++.+..+ +++.|++...+|
T Consensus 74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-----------~gd~Vlv~~p~y 142 (425)
T 2r2n_A 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-----------PGDNVLLDEPAY 142 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-----------CCCEEEEeCCCc
Confidence 3334445678889999999999986410 00 0002689999999999877776543 567788899999
Q ss_pred hHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH------HCCCccEEEEe-ecCCccccccCCch---HH
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI------QAGLIPLFLCA-TVGTTAITTVDPLG---PL 252 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~------~~g~~p~~vv~-~~gtt~~G~idpl~---~I 252 (486)
.++...++..|. +++.+|+++ + .+|+++|+++++... ..+..+.+|++ ..++|++|.+-|.+ +|
T Consensus 143 ~~~~~~~~~~g~---~~~~v~~~~--~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l 216 (425)
T 2r2n_A 143 SGTLQSLHPLGC---NIINVASDE--S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEI 216 (425)
T ss_dssp HHHHHHHGGGTC---EEEEECEET--T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHcCC---EEEEeCcCC--C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHH
Confidence 999999999999 999999874 2 499999999986311 00112345544 67899999998755 99
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCC--CCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI--EGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~--~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+++|++||+++++|++|+.+.+....... +..+ ...+.+..+++|+++....+|+++.+++ ... .+.......
T Consensus 217 ~~~a~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~~-~l~~~~~~~-- 291 (425)
T 2r2n_A 217 YELARKYDFLIIEDDPYYFLQFNKFRVPT-FLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP-LIE-RVILHIQVS-- 291 (425)
T ss_dssp HHHHHHTTCEEEEECTTGGGBSSSSCCCC-TGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HHH-HHHHHHHTT--
T ss_pred HHHHHHcCCEEEEECCcccccCCCCCCCC-ccccCCCCCEEEEccchhhccCccceEEEecCHH-HHH-HHHHHHHHh--
Confidence 99999999999999999764332111111 1111 1234667789999973335798888754 222 221100000
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhch----HHHHHHHHHHHHHHHHHHHHHhC-CCCeE-EecCCCe
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGV----ANLRNFLRSHVRMAQLFQELVGG-DNRFE-IVAPRNF 401 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~----~g~~~~~~~~~~~a~~l~~~L~~-~~~~~-~~~~~~~ 401 (486)
+ . ....+..++ ++..++. +.++++.++..++++++.+.|++ +|++. +..+...
T Consensus 292 --------------~--~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g 353 (425)
T 2r2n_A 292 --------------T--L--HPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAG 353 (425)
T ss_dssp --------------T--C--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBS
T ss_pred --------------c--C--CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCce
Confidence 0 0 112222233 3333222 34556667777888899999987 57774 4433334
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-----CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-----GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
..+.+.+.... ... +.+.+.+.+.|+.+..+..+. +..++|++++ ..++++|+++++.|.
T Consensus 354 ~~~~~~~~~~~----------~~~---~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~--~~~~~~i~~~~~~l~ 418 (425)
T 2r2n_A 354 MFLWIKVKGIN----------DVK---ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFS--SASPEQMDVAFQVLA 418 (425)
T ss_dssp SEEEEEETTCS----------CCH---HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECS--SCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCCC----------CHH---HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeC--CCCHHHHHHHHHHHH
Confidence 44555654311 001 124556667787554433332 2478999985 258889999999999
Q ss_pred HHHHHH
Q 038818 477 EKLDGI 482 (486)
Q Consensus 477 ~~~~~l 482 (486)
++++++
T Consensus 419 ~~l~~~ 424 (425)
T 2r2n_A 419 QLIKES 424 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-20 Score=179.23 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=192.8
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++++.+++++|.+.+ ..++|+|+++++..++... +++.|+++..+|.++...++..|+
T Consensus 54 ~~lr~~la~~~~~~~~-------~i~~t~G~~~~l~~~~~~~-------------~gd~vl~~~p~~~~~~~~~~~~g~- 112 (337)
T 3p1t_A 54 PRVMRKLAEHFSCPED-------NLMLVRGIDECFDRISAEF-------------SSMRFVTAWPGFDGYRARIAVSGL- 112 (337)
T ss_dssp HHHHHHHHHHHTSCGG-------GEEEESHHHHHHHHHHHHS-------------TTSEEEEESSSCSHHHHHHTTSCC-
T ss_pred HHHHHHHHHHhCcCHH-------HEEEeCCHHHHHHHHHHhc-------------CCCeEEEeCCCcHHHHHHHHHcCC-
Confidence 3456677888888765 6899999998887665543 345677888999999999999999
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhcc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACI 275 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~ 275 (486)
+++.+|+++ ++.+|+++|+++. .+.+|+++.++|++|.+.|+++|.++|+++++ +++|++|+.+...
T Consensus 113 --~~~~v~~~~--~~~~d~~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~ 179 (337)
T 3p1t_A 113 --RHFEIGLTD--DLLLDPNDLAQVS--------RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF 179 (337)
T ss_dssp --EEEEECBCT--TSSBCHHHHTTCC--------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC
T ss_pred --EEEEecCCC--CCCCCHHHHHhhc--------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc
Confidence 999999875 5799999998751 14578999999999999999999999999997 5669999764321
Q ss_pred CccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc
Q 038818 276 CPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA 354 (486)
Q Consensus 276 ~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~ 354 (486)
.+. .......+.+..+++|+++ .+..+|+++.+++ ... .+.....+ . ....
T Consensus 180 ~~~----~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~-~l~~~~~~--------------------~--~~~~ 231 (337)
T 3p1t_A 180 RAR----GLAYGENELVFRSFSKSYGLAGLRLGALFGPSE-LIA-AMKRKQWF--------------------C--NVGT 231 (337)
T ss_dssp SSS----CCCCBTTEEEEEESSSTTCCTTTCCEEEECCHH-HHH-HHHTTSCT--------------------T--CSCH
T ss_pred ccc----ccccCCCEEEEeeCchhccCcchheEEEEeCHH-HHH-HHHhhcCC--------------------C--CCCH
Confidence 111 1122345678889999997 5556787776443 332 22111000 0 1122
Q ss_pred hHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHH
Q 038818 355 LKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLE 433 (486)
Q Consensus 355 l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~ 433 (486)
+...+....+. .+.+.+.+++..++++++.+.|+++ ++++. ++..+.+.+..... ..+.+
T Consensus 232 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-----------------~~~~~ 292 (337)
T 3p1t_A 232 LDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVA-SSEANFVLVENAAG-----------------ERTLR 292 (337)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC-CCSSSEEEEECTTT-----------------HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEEC-CCCCeEEEEEcCCH-----------------HHHHH
Confidence 33333333332 2456777788888899999999887 77764 45556666654321 23455
Q ss_pred HHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 434 SINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 434 ~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+.++|+.+..+..+...+++|++++ +++++++++++|+++.+
T Consensus 293 ~l~~~gi~v~~g~~~~~~~~iRis~~----~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 293 FLRERGIQVKDAGQFGLHHHIRISIG----REEDNDRLLAALAEYSD 335 (337)
T ss_dssp HHHHTTEECEEGGGGTCCSEEEEECC----CHHHHHHHHHHHHHHTC
T ss_pred HHHHCCeEEEECccCCCCCeEEEecC----CHHHHHHHHHHHHHHhh
Confidence 66677875444433333578999984 57799999999988653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-20 Score=182.73 Aligned_cols=293 Identities=12% Similarity=0.012 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH---HHH
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA---AQI 191 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a---~~~ 191 (486)
..++++++++++|.+. .++++|||+|+..++.+....- ++.+|+++...|++.... +..
T Consensus 50 ~~~l~~~la~~~~~~~---------~i~~~~g~~a~~~a~~~~~~~g---------~~~vvi~~~~~~~~~~~~~~~~~~ 111 (359)
T 3pj0_A 50 IEDFETKIAKILGKQS---------AVFFPSGTMAQQIALRIWADRK---------ENRRVAYHPLSHLEIHEQDGLKEL 111 (359)
T ss_dssp HHHHHHHHHHHHTCSE---------EEEESCHHHHHHHHHHHHHHHH---------TCCEEEECTTCHHHHSSTTHHHHH
T ss_pred HHHHHHHHHHHhCCCc---------EEEeCCHHHHHHHHHHHHHhcC---------CCcEEEEeccceeeehhcchHHHh
Confidence 3455677888888753 3677899999988888776541 333677777888776432 355
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc-cccCCchHH---HHHHHHhCceEEeec
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI-TTVDPLGPL---CDIAKRYSIWVHVDA 267 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~-G~idpl~~I---~~i~~~~g~~lhvD~ 267 (486)
.|. +++.+|.+ ++.+|+++|+++ .+ .+.+|+++.++|++ |.+.|++++ +++|++||+++|+|+
T Consensus 112 ~g~---~~~~v~~~---~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~ 178 (359)
T 3pj0_A 112 QQI---TPLLLGTA---NQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDG 178 (359)
T ss_dssp HCC---EEEECSCT---TSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCc---eEEecCCc---CCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 688 88888763 569999999987 21 24578888887777 688775555 999999999999999
Q ss_pred cccchhcc--CccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACI--CPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~--~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
+|..+... ........ ..+|.+++++||++++|.+ |+ ++.+++.......... .....
T Consensus 179 a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~-~~~~~~l~~~~~~~~~-~~~~~-------------- 238 (359)
T 3pj0_A 179 ARLWEITPFYQKSAEEIC---ALFDSVYVSFYKGIGGIAG-AI-LAGNDDFVQEAKIWKR-RYGGD-------------- 238 (359)
T ss_dssp TTCGGGHHHHTCCHHHHH---TTCSEEEEESSSTTCCSSC-EE-EEECHHHHHHHHHHHH-HTTCC--------------
T ss_pred cchhcchhhhCCCHHHhh---ccCCEEEEeccccCCCcce-EE-EECCHHHHHHHHHHHH-HhCCC--------------
Confidence 98543311 11111111 3689999999999998855 44 4455544332211000 00000
Q ss_pred ccCCCCCC--chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cCCCeeEEEEEeecCCCCCCCCCCcc
Q 038818 346 ITLSRRFR--ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-APRNFAVVCFRVLPSASGLGDGKANE 422 (486)
Q Consensus 346 ~~~sr~~~--~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~ 422 (486)
..... +.....++.. ..+.+++..++++++.+.|+++|++++. .++..+.+.+++....
T Consensus 239 ---~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~---------- 300 (359)
T 3pj0_A 239 ---LISLYPYILSADYYFEK-----RIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSA---------- 300 (359)
T ss_dssp ---CSCCHHHHHHHHHHHHH-----HGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCH----------
T ss_pred ---cchhHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCcc----------
Confidence 00001 1111222221 1245566778899999999999999986 4566777777775431
Q ss_pred chHHHHHHHHHHHHhcCcEEEeeee--ECCEeEEEEEecCCC--CcHHHHHHHHHHHHHH
Q 038818 423 GANELNRKLLESINASGQLYVSHGM--VAGIYFIRFAVGATL--TEDRHVIAAWKVVQEK 478 (486)
Q Consensus 423 ~~~~~~~~l~~~l~~~g~~~~~~~~--~~~~~~lR~~~~~~~--tt~~did~~i~~l~~~ 478 (486)
......+.+.+.++|+.+..+.. ..+..++|+++.... .+.+++++.++.|.+.
T Consensus 301 --~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 301 --DEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp --HHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 22345677788888975433322 246789999885433 4677788887777654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=192.20 Aligned_cols=376 Identities=12% Similarity=0.068 Sum_probs=206.6
Q ss_pred CHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCC
Q 038818 52 PIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKS 131 (486)
Q Consensus 52 ~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~ 131 (486)
...+-.+.+...-..-........|+++.++.+. +. +.+.+...+......|...+...++ ++++++++|.+
T Consensus 19 ~~~~~~~~~~~~g~~~~~~~~~~~ylD~~~~~~~-~~-v~~a~~~~l~~~~~~y~~~~~~~~l----~~~la~~~~~~-- 90 (467)
T 2oqx_A 19 TRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGT-GA-VTQSMQAAMMRGDEAYSGSRSYYAL----AESVKNIFGYQ-- 90 (467)
T ss_dssp CHHHHHHHHHHTTSCGGGSCGGGCSEECSCCSSC-SC-CCHHHHHHTTSCCCCSSSCHHHHHH----HHHHHHHHCCS--
T ss_pred cHHHHHHHHHHcCCCceeccCCCeeEecccCCCc-HH-HHHHHHHHhccCcceeccCchhHHH----HHHHHHHhCcC--
Confidence 4555555554421111111122357777655433 33 3334444444333345555554444 45677777753
Q ss_pred CccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHH-HHHHHHcCCCCCCeEEE------e
Q 038818 132 FLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSAL-QKAAQIAGIDPKNFRAI------K 203 (486)
Q Consensus 132 ~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~-~~a~~~~G~g~~~v~~v------~ 203 (486)
.+++|+|||+||..|+.+++....... |.++ +.|+++ ..|+.. .......|. .++.. +
T Consensus 91 -------~v~~t~~gt~A~~~al~~~~~~~~~~~---G~~~~d~Ii~~-~~h~~t~~~~~~~~~~---~~~~~~~~~~~~ 156 (467)
T 2oqx_A 91 -------YTIPTHQGRGAEQIYIPVLIKKREQEK---GLDRSKMVAFS-NYFFDTTQGHSQINGC---TVRNVYIKEAFD 156 (467)
T ss_dssp -------EEEEEC--CCSHHHHHHHHHHHHHHHH---CCCTTTCEEEE-SSCCHHHHHHHHHTTC---EEEECBCTTTTC
T ss_pred -------cEEEcCCcHHHHHHHHHHHhccccccC---CCCccceEEec-ccccccchhhhhccCc---ceeecccccccc
Confidence 579999999999999998875411111 1111 335555 578553 333344454 43332 2
Q ss_pred cCC--CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccc-ccc---CCchHHHHHHHHhCceEEeeccccc-hhc--
Q 038818 204 TTK--SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAI-TTV---DPLGPLCDIAKRYSIWVHVDAAYAG-SAC-- 274 (486)
Q Consensus 204 ~d~--~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~-G~i---dpl~~I~~i~~~~g~~lhvD~a~g~-~~~-- 274 (486)
.+. ..++.+|+++|+++|++.. ...+.+|+++.+++++ |.+ +++++|+++|++||+|+|+|++++. ...
T Consensus 157 ~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~ 234 (467)
T 2oqx_A 157 TGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFI 234 (467)
T ss_dssp TTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHH
T ss_pred CCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhc
Confidence 210 0246899999999998631 0124478888888887 665 5689999999999999999988755 221
Q ss_pred ------cCc-cchhhh-cCCCCCCceeeccccccCCCCcceEEEeeCc---hHHHHHhcCCcccc-cCccCCCCCccCCC
Q 038818 275 ------ICP-EFRHFI-DGIEGADSFSLNAHKWFFTTLDCCCLWVKNP---NALIKALSTNPEFL-RNKASDSKQVVDYK 342 (486)
Q Consensus 275 ------~~~-~~~~~~-~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~---~~~~~~~~~~~~y~-~~~~~~~~~~~~~~ 342 (486)
... ...... .....+|++++++||+++.|.| |+++.+++ +.+... . .+. .... .
T Consensus 235 ~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~-~---~~~~~~~~--------~- 300 (467)
T 2oqx_A 235 KQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTEC-R---TLCVVQEG--------F- 300 (467)
T ss_dssp HHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHH-H---HHHHHTTS--------S-
T ss_pred ccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHH-H---HhhhccCC--------c-
Confidence 111 111110 0013578889999999988754 56666655 222211 1 111 0000 0
Q ss_pred CccccCCCCCCchHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeec--CCCCCCCCC
Q 038818 343 DWQITLSRRFRALKLWLVLRSFGVANL-RNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP--SASGLGDGK 419 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~ 419 (486)
.+.+. ..+..+ .++...-.+.+ ++.+++..++++++.+.|+++ ++++. +.....+.+.+.. ... +
T Consensus 301 ---~~~~~-~~~~~~-~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~---~-- 368 (467)
T 2oqx_A 301 ---PTYGG-LEGGAM-ERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHI---P-- 368 (467)
T ss_dssp ---CCCCC-CCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTS---C--
T ss_pred ---ccccc-hhhhHH-HHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccC---C--
Confidence 00000 011111 12221001122 234566678889999999887 78777 5455566666532 110 0
Q ss_pred CccchHHH-HHHHHHHH-HhcCcEEEeeeeE-------------CCEeEEEEEecCCC-CcHHHHHHHHHHHHHHHHHH
Q 038818 420 ANEGANEL-NRKLLESI-NASGQLYVSHGMV-------------AGIYFIRFAVGATL-TEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 420 ~~~~~~~~-~~~l~~~l-~~~g~~~~~~~~~-------------~~~~~lR~~~~~~~-tt~~did~~i~~l~~~~~~l 482 (486)
. .++ ..++.+.| .+.|+.+.....+ .+..++|+++. .. ++++||+++++.|+++++++
T Consensus 369 -~---~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 369 -A---DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP-RATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp -G---GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCC-TTTSCHHHHHHHHHHHHHHHHSG
T ss_pred -c---ccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEec-CCCCCHHHHHHHHHHHHHHHhhh
Confidence 1 122 34567777 6778754432211 02368999984 45 78899999999999988754
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=191.24 Aligned_cols=321 Identities=12% Similarity=0.093 Sum_probs=194.0
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCe----------
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRL---------- 173 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~---------- 173 (486)
.|.......++++.+.+|+.+.+|++.. ...+++|+|||+|+..++.+... +++
T Consensus 78 ~y~~~~g~~~lr~~ia~~l~~~~g~~~~-----~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~~~~~ 141 (444)
T 3if2_A 78 NYSNPQGDSAFIDALVGFFNRHYDWNLT-----SENIALTNGSQNAFFYLFNLFGG-----------AFVNEHSQDKESK 141 (444)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHHHSSE-----------EEECC-------C
T ss_pred ccCCCCCCHHHHHHHHHHHHhhcCCCCC-----HHHEEEecCcHHHHHHHHHHHhC-----------CCccccccccccc
Confidence 4554555688999999999988886532 13799999999999888776532 222
Q ss_pred ----EEEec-CCCchHHHHHH------HHcCCCCCCeEEEecCCC-C--CcccCHHHHHHHHHHHHHCCCccEEEEeecC
Q 038818 174 ----VVYGS-DQTHSALQKAA------QIAGIDPKNFRAIKTTKS-S--SFTLTPESLQAAIDLDIQAGLIPLFLCATVG 239 (486)
Q Consensus 174 ----~v~~s-~~~H~s~~~a~------~~~G~g~~~v~~v~~d~~-~--~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g 239 (486)
.|+++ ..+|.....++ ...|. .++.+|+++. + ++.+|+++|+++++... ..+.+|+++.+
T Consensus 142 g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p 215 (444)
T 3if2_A 142 SVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP---HIDEVTHDGEEGFFKYRVDFEALENLPALKE---GRIGAICCSRP 215 (444)
T ss_dssp EEEEEEEESSSSCCGGGTTCCSSSCCEEECCC---EEEEEEETTEEEEEEEECCHHHHHTCHHHHT---TCEEEEEEESS
T ss_pred cccceEEEeCCCCccchhhcccccchhhccCc---eEEecccccccCccccCCCHHHHHHHHHhcC---CCceEEEeCCC
Confidence 45554 56666654432 22344 6777887641 1 25799999999865422 12557888889
Q ss_pred CccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 240 TTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 240 tt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
+|++|.+-| +++|+++|++||+++|+|++|+.+.... .+..........+.++.++||++..+.++|+++.+. ..
T Consensus 216 ~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~l 293 (444)
T 3if2_A 216 TNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI-IYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADA-KV 293 (444)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCH-HH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc-ccccccccCCCCEEEEechhhccCCCCceEEEEECH-HH
Confidence 999999988 8899999999999999999997532111 111111112356678889999855556778776543 33
Q ss_pred HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHH----HHH-HHHHHHHHHHHHHHHHhC-C
Q 038818 317 LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVAN----LRN-FLRSHVRMAQLFQELVGG-D 390 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g----~~~-~~~~~~~~a~~l~~~L~~-~ 390 (486)
..........+. .....+...++...+.... ..+ +.++..++.+++.+.|.+ +
T Consensus 294 ~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 352 (444)
T 3if2_A 294 IEAVSAMNAVVN---------------------LAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQAL 352 (444)
T ss_dssp HHHHHHHHHHHH---------------------SSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc---------------------CCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 221111000000 0112233333332221111 122 334445556666666644 3
Q ss_pred C--CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC----------CEeEEEEEe
Q 038818 391 N--RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA----------GIYFIRFAV 458 (486)
Q Consensus 391 ~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----------~~~~lR~~~ 458 (486)
+ ++++..+.....+.+.+..... ....+.+.+.++|+.+.++..+. +..++|+++
T Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~~-------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~ 419 (444)
T 3if2_A 353 GDYPLMIHKPEGAIFLWLWFKDLPI-------------STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSI 419 (444)
T ss_dssp SSSSEEEECCCBSSEEEEEETTCSS-------------CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEES
T ss_pred ccCCceEecCCccEEEEEEcCCCCC-------------CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEE
Confidence 4 4666544444455555543110 02356667777787544433221 126899998
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 459 GATLTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 459 ~~~~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
.. ++++|+++++.|.++++++..+
T Consensus 420 ~~---~~e~i~~~l~~l~~~~~~~~~~ 443 (444)
T 3if2_A 420 AA---DEQTLIDGIKVIGEVVRELYDN 443 (444)
T ss_dssp SS---CHHHHHHHHHHHHHHHHHHHTC
T ss_pred eC---CHHHHHHHHHHHHHHHHHHHcc
Confidence 53 7889999999999999887643
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-21 Score=185.55 Aligned_cols=279 Identities=13% Similarity=0.099 Sum_probs=181.2
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH----HHc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA----QIA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~----~~~ 192 (486)
++++.+++++|.+ . .+++++||+|+..++.+... +++.|+++..+|.+....+ +..
T Consensus 2 ~l~~~la~~~g~~-~--------~i~~~sG~~a~~~~~~~~~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~ 61 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A--------CAATASGMGAIAASVWTFLK-----------AGDHLISDDCLYGCTHALFEHQLRKF 61 (331)
T ss_dssp HHHHHHHHHHTCS-E--------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHhCCC-e--------EEEeCChHHHHHHHHHHhcC-----------CCCEEEEcCCCcchHHHHHHHHHHhc
Confidence 3557788888876 2 45666669998877776532 5667888899999876665 457
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH-hCceEEeeccccc
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR-YSIWVHVDAAYAG 271 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~-~g~~lhvD~a~g~ 271 (486)
|+ +++.+|. +|+++|+++++++ +.+|++++++|++|.+.|+++|.++|++ +|+++++|++|+.
T Consensus 62 g~---~~~~~~~-------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~ 125 (331)
T 1pff_A 62 GV---EVDFIDM-------AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFAS 125 (331)
T ss_dssp TC---EEEEECT-------TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTH
T ss_pred CC---EEEEeCC-------CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcc
Confidence 88 8888864 3778898888643 4578889999999999999999999999 9999999999987
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+....+. . .++|.++.++||++++|.+ +|+++.++++...........|. +
T Consensus 126 ~~~~~~~-~------~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~--------------------~ 178 (331)
T 1pff_A 126 PILTNPL-D------LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDIT--------------------G 178 (331)
T ss_dssp HHHCCGG-G------GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCC--------------------C
T ss_pred cccCChh-h------cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhc--------------------C
Confidence 6543321 1 2689999999999998876 78887776344332211111100 0
Q ss_pred CCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC--------------CeEEecC---CCeeEEEEEeecCC
Q 038818 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN--------------RFEIVAP---RNFAVVCFRVLPSA 412 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~--------------~~~~~~~---~~~~~v~f~~~~~~ 412 (486)
.....+..|..++.+ +.+....++..++++.+.+.|++.+ ++++..+ ...++++|.+..
T Consensus 179 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 254 (331)
T 1pff_A 179 AIISPHDAWLITRGT--LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG-- 254 (331)
T ss_dssp CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--
T ss_pred CCCCHHHHHHHHcCc--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC--
Confidence 011233444433332 2334444555555666666554432 3332211 135678887642
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee------------------------eECC--EeEEEEEecCCCCcHH
Q 038818 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHG------------------------MVAG--IYFIRFAVGATLTEDR 466 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------------------------~~~~--~~~lR~~~~~~~tt~~ 466 (486)
...+.+.+.+.|+...... ...+ .+++|+++. ..++++
T Consensus 255 ---------------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~t~~ 318 (331)
T 1pff_A 255 ---------------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVG-CENVQD 318 (331)
T ss_dssp ---------------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECC-SSCHHH
T ss_pred ---------------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEe-cCCHHH
Confidence 1245556666776321110 0011 468999995 578888
Q ss_pred HHHHHHHHHHHH
Q 038818 467 HVIAAWKVVQEK 478 (486)
Q Consensus 467 did~~i~~l~~~ 478 (486)
+|++++++|+++
T Consensus 319 ~i~~l~~~l~~~ 330 (331)
T 1pff_A 319 IIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=191.97 Aligned_cols=309 Identities=12% Similarity=0.004 Sum_probs=190.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH-HHH
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-LQK 187 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~ 187 (486)
+....+|...++++++++|.+.. .++++|||+||..++.+++. +++.|+++..+|.+ +..
T Consensus 87 ~~~~~~e~~a~~~la~~~g~~~~--------~v~~~sGs~a~~~a~~~~~~-----------~Gd~Vl~~~~~~~~~~~~ 147 (447)
T 3h7f_A 87 EHVDVVENLARDRAKALFGAEFA--------NVQPHSGAQANAAVLHALMS-----------PGERLLGLDLANGGHLTH 147 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEECGGGTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCce--------EEEeCCHHHHHHHHHHHhcC-----------CCCEEEecCcccccccch
Confidence 33445665555999999998642 34478889999888777643 56778888888755 211
Q ss_pred H--HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEe
Q 038818 188 A--AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHV 265 (486)
Q Consensus 188 a--~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhv 265 (486)
. ....|.+. .++.+++++ +++.+|+++|++++++.. |.+|+++.+.++++. |+++|+++|++||+++|+
T Consensus 148 ~~~~~~~g~~~-~~~~~~~~~-~~~~~d~~~l~~~i~~~~-----~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~ 218 (447)
T 3h7f_A 148 GMRLNFSGKLY-ENGFYGVDP-ATHLIDMDAVRATALEFR-----PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLV 218 (447)
T ss_dssp TCTTSHHHHSS-EEEEECCCT-TTCSCCHHHHHHHHHHHC-----CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEE
T ss_pred hhhhhhcCCee-EEEEcCcCc-ccCCcCHHHHHHHHHhcC-----CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEE
Confidence 1 11222200 455666664 357899999999997642 336666667676655 999999999999999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
|++|+.+.......... ++.+|.++.++||++++|.+ |+++.+++ ..........++..
T Consensus 219 Dea~~~g~~~~g~~~~~---~~~~di~~~s~sK~l~G~~g-G~i~~~~~-~~~~l~~~~~~~~~---------------- 277 (447)
T 3h7f_A 219 DMAHFAGLVAAGLHPSP---VPHADVVSTTVHKTLGGGRS-GLIVGKQQ-YAKAINSAVFPGQQ---------------- 277 (447)
T ss_dssp ECTTTHHHHHTTSSCCS---TTTCSEEEEESSGGGCCCSC-EEEEECGG-GHHHHHHHHTTTTC----------------
T ss_pred ECCchhhhhcCCCCCCC---CCCCcEEEecCCcCCCCCCe-EEEEECHH-HHHHHhhhcCCccc----------------
Confidence 99986544332221111 24689999999999988765 77776653 22211110001110
Q ss_pred ccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecC-CCeeEEEEEeecCCCCCCCCC
Q 038818 346 ITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAP-RNFAVVCFRVLPSASGLGDGK 419 (486)
Q Consensus 346 ~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~ 419 (486)
.+-. ....++..++.....++++++.++..++++++.+.|++. ++++++.+ ...+.+.+.+.+...
T Consensus 278 --~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 349 (447)
T 3h7f_A 278 --GGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL------ 349 (447)
T ss_dssp --SSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC------
T ss_pred --CCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCC------
Confidence 0000 012333444544445578889999999999999999876 57888753 344555655543210
Q ss_pred CccchHHHHHHHHHHHHhcCcEEEe---ee---eECCEeEEEEEecC---CCCcHHHHHHHHHHHHHHHHH
Q 038818 420 ANEGANELNRKLLESINASGQLYVS---HG---MVAGIYFIRFAVGA---TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~~g~~~~~---~~---~~~~~~~lR~~~~~---~~tt~~did~~i~~l~~~~~~ 481 (486)
. ...+.+.+.+.|+.+.. +. ......++|++... ...+++|++++++.|.+++++
T Consensus 350 ---~----~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 350 ---D----GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp ---C----HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ---C----HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 0 12334444455764321 11 11224579998632 125788999999999988754
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=188.56 Aligned_cols=325 Identities=12% Similarity=0.040 Sum_probs=200.3
Q ss_pred HHHHHHHh-hcCC-CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc--ceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 89 FLGEMLSS-GFNV-VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG--GGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 89 ~~~~~l~~-~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~--~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
.+.+.+.. .+.. ....|...+...++.+.+.+++.+..+.+.. .. ..++|+|||+|+..++...... .
T Consensus 48 ~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-----~~~~~i~~t~g~~~a~~~~~~~~~~~--~- 119 (397)
T 3fsl_A 48 AVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK-----QQRVATIQTLGGSGALKVGADFLKRY--F- 119 (397)
T ss_dssp HHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEESHHHHHHHHHHHHHHHH--C-
T ss_pred HHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc-----ccceEEEEcCCcHHHHHHHHHHHHhc--C-
Confidence 34455554 4443 2345555556678888888887665442101 12 4799999999998775433211 0
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
+++.|+++..+|.++...++..|. +++.+|++.++++.+|+++|++++++. .....+++.+.++|++|
T Consensus 120 ------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG 187 (397)
T 3fsl_A 120 ------PESGVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEATNGVRFNDLLATLKTL---QAGSIVLLHPCCHNPTG 187 (397)
T ss_dssp ------TTCCEEEESSCCHHHHHHHHHTTC---CEEEECCEETTTTEECHHHHHHHHTTC---CTTCEEEECSSSCTTTC
T ss_pred ------CCCeEEEeCCCchhHHHHHHHcCC---ceEEEeeeeccCCcCcHHHHHHHHHhC---CCCCEEEEeCCCCCCCC
Confidence 566788889999999999999999 999999832236799999999998742 12245788889999999
Q ss_pred cc---CCchHHHHHHHHhCceEEeeccccchhccC-ccchhh--hcCCCCCCceeeccccccCC-CCcceEEEe--eCch
Q 038818 245 TV---DPLGPLCDIAKRYSIWVHVDAAYAGSACIC-PEFRHF--IDGIEGADSFSLNAHKWFFT-TLDCCCLWV--KNPN 315 (486)
Q Consensus 245 ~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~-~~~~~~--~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~--~~~~ 315 (486)
.+ +++++|+++|++||+++++|++|+.+.... ...... +.+...-..+..+++|.++. ...+|++++ .++.
T Consensus 188 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~ 267 (397)
T 3fsl_A 188 ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAE 267 (397)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHH
T ss_pred cCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHH
Confidence 99 556799999999999999999997654321 111111 11122334667788999984 445788775 3443
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHH
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLFQELV 387 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L 387 (486)
.+.+.......+.... .. ....+...++...+. .+.++++.++..++++++.+.|
T Consensus 268 ~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (397)
T 3fsl_A 268 AAGRVLGQLKATVRRN--------------YS---SPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVL 330 (397)
T ss_dssp HHHHHHHHHHHHHHTT--------------TS---SCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------------cC---CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211100000000 00 011222222222222 4557778888889999999999
Q ss_pred hCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCc
Q 038818 388 GGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTE 464 (486)
Q Consensus 388 ~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt 464 (486)
++++ ++++.. +..+.+.|.-.+ . +.+.+.+.++|+. +.+. + |+++.. . +
T Consensus 331 ~~~~~~~~~~~~~-~~~~~~~~~~~~--------------~---~~~~~~l~~~gi~-v~~g---~----Ris~~~-~-~ 382 (397)
T 3fsl_A 331 STEMPERNFDYLL-NQRGMFSYTGLS--------------A---AQVDRLREEFGVY-LIAS---G----RMCVAG-L-N 382 (397)
T ss_dssp HHHCTTSCCTHHH-HCCSSEEECCCC--------------H---HHHHHHHHTTCEE-CCTT---C----EEEGGG-C-C
T ss_pred HhcCCCCCceeec-CCceEEEecCCC--------------H---HHHHHHHHhCCEE-ECCC---C----eEEEEe-c-C
Confidence 8764 565442 333444431111 1 2345556667764 3332 1 899853 3 4
Q ss_pred HHHHHHHHHHHHHH
Q 038818 465 DRHVIAAWKVVQEK 478 (486)
Q Consensus 465 ~~did~~i~~l~~~ 478 (486)
+++|+++++.|+++
T Consensus 383 ~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 383 TANVQRVAKAFAAV 396 (397)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhh
Confidence 45799999999875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-20 Score=186.90 Aligned_cols=307 Identities=11% Similarity=0.008 Sum_probs=199.2
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..|...+...++++.+.+|+. .|++.. ....++|+|+++++..+ ..... +++.|+++..+|
T Consensus 105 ~~y~~~~g~~~lr~~ia~~~~--~g~~~~-----~~~i~~t~G~~~al~~~-~~l~~-----------~gd~Vl~~~p~~ 165 (449)
T 3qgu_A 105 SGYGAEQGQGALREAVASTFY--GHAGRA-----ADEIFISDGSKCDIARI-QMMFG-----------SKPTVAVQDPSY 165 (449)
T ss_dssp CCSTTTTCCHHHHHHHHHHHH--TTTTCC-----GGGEEEESCHHHHHHHH-HHHHC-----------SSSCEEEEESCC
T ss_pred CCCCCCCCcHHHHHHHHHHHH--cCCCCC-----HHHEEEccCHHHHHHHH-HHHhC-----------CCCEEEEcCCCC
Confidence 345444556788888888877 554322 12789999999887654 33221 566788899999
Q ss_pred hHHHHHHHHcCCCCCC----------eEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---c
Q 038818 183 SALQKAAQIAGIDPKN----------FRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---L 249 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~----------v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l 249 (486)
.++..+++..|. + ++.+|++.++.+..|++++ ..+.+|+++.++|++|.+-| +
T Consensus 166 ~~~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPtG~~~~~~~l 231 (449)
T 3qgu_A 166 PVYVDTSVMMGM---TGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPTGAAATRAQL 231 (449)
T ss_dssp THHHHHHHHHTC---SCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTTCCCCCHHHH
T ss_pred hhHHHHHHHcCC---cccccccccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCCCCcCCHHHH
Confidence 999999999998 7 9999998644455554332 12346777799999999865 8
Q ss_pred hHHHHHHHHhCceEEeeccccchhccCccchh--hhcCCCCCCceeeccccccC-CCCcceEEEeeCchHH------HHH
Q 038818 250 GPLCDIAKRYSIWVHVDAAYAGSACICPEFRH--FIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNAL------IKA 320 (486)
Q Consensus 250 ~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~--~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~------~~~ 320 (486)
++|+++|++||+++++|++|+++......... .+.+....+.+..+++|+++ ....+|+++.+++..- ...
T Consensus 232 ~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~ 311 (449)
T 3qgu_A 232 TELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHAD 311 (449)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHH
T ss_pred HHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHH
Confidence 88899999999999999999875432111111 11112345677889999998 5567898887654210 000
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG---VANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
+.....+. ......+...++...+. .+.++++.++..++++++.+.|+++ ++++..
T Consensus 312 ~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 370 (449)
T 3qgu_A 312 WNRVMTTC--------------------FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYG 370 (449)
T ss_dssp HHHHHHHS--------------------CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred HHHHhhcc--------------------cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeC
Confidence 00000000 00123344444444443 3567788889999999999999987 788775
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
+.....+.+.+.+. + ..++.+.|.++ |+.+.++..+ .+..++|+++. .++++|+++++.
T Consensus 371 ~~~~~~~~~~~~~~-------------~--~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~---~~~e~i~~~l~~ 432 (449)
T 3qgu_A 371 GDDAPYIWVGFPGK-------------P--SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAF---GSRENILEAVRR 432 (449)
T ss_dssp SSSSSEEEEECTTS-------------C--HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCC-------------C--HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEec---CCHHHHHHHHHH
Confidence 54455666655411 0 23456566554 7754433322 23578999974 378899999999
Q ss_pred HHHHHHH
Q 038818 475 VQEKLDG 481 (486)
Q Consensus 475 l~~~~~~ 481 (486)
|++++++
T Consensus 433 l~~~~~~ 439 (449)
T 3qgu_A 433 FKEAYGK 439 (449)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9988754
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=186.17 Aligned_cols=290 Identities=13% Similarity=0.036 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+++++++|.+.+ .+++|+|||+|+..++.+++... + ++.+|+.+...|.+...++..
T Consensus 86 ~~~~~~l~~~la~~~~~~~~-------~v~~~~gg~~a~~~al~~~~~~~--~------~~~vi~~~~~y~~~~~~~~~~ 150 (395)
T 1vef_A 86 TPMRGEFYRTLTAILPPELN-------RVFPVNSGTEANEAALKFARAHT--G------RKKFVAAMRGFSGRTMGSLSV 150 (395)
T ss_dssp CHHHHHHHHHHHHTSCTTEE-------EEEEESSHHHHHHHHHHHHHHHH--S------CCEEEEETTCCCCSSHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCcC-------EEEEcCcHHHHHHHHHHHHHHHh--C------CCeEEEEcCCcCCCchhhhhh
Confidence 34566778889999887544 68999999999998888765321 0 344555554455566666666
Q ss_pred cCCCC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 192 AGIDP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 192 ~G~g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
.|... ..+..+| ..|+++|+++|++. +.+|+++..++++|.+.| +++|+++|++
T Consensus 151 ~g~~~~~~~~~p~~~~~~~~~-------~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~ 217 (395)
T 1vef_A 151 TWEPKYREPFLPLVEPVEFIP-------YNDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQE 217 (395)
T ss_dssp CCCHHHHGGGCSCSSCEEEEC-------TTCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred cCCcccccccCCCCCCeeEeC-------CCcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHHHHHHHHHH
Confidence 66510 0123332 24899999988642 456777777788998877 9999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
||+++|+|++|+++......+.....++ ..|.+ ++||+++++.++|+++++++ .. +.+... .+
T Consensus 218 ~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~--s~sK~~~~g~~~G~~~~~~~-~~-~~l~~~-~~----------- 280 (395)
T 1vef_A 218 KGALLILDEIQTGMGRTGKRFAFEHFGI-VPDIL--TLAKALGGGVPLGVAVMREE-VA-RSMPKG-GH----------- 280 (395)
T ss_dssp HTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEE--EECGGGGTTSSCEEEEEEHH-HH-HTSCTT-SS-----------
T ss_pred cCCEEEEEecccCCccCCchhHhhhcCC-CCCEE--EEcccccCCCceEEEEehHH-HH-hhhccC-Cc-----------
Confidence 9999999999985321111111111122 46766 45999998888999998765 32 222110 00
Q ss_pred cCCCCccccCCCCCCchH---HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC--eEEecCCCeeEEEEEeecCCC
Q 038818 339 VDYKDWQITLSRRFRALK---LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR--FEIVAPRNFAVVCFRVLPSAS 413 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~--~~~~~~~~~~~v~f~~~~~~~ 413 (486)
. .+-....+. +..+++.+.. .++.++..++++++.+.|++++. +... ++..+++.+.+...
T Consensus 281 ------~--~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~~~~~-- 346 (395)
T 1vef_A 281 ------G--TTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGLMVGLELKEK-- 346 (395)
T ss_dssp ------C--CSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETTEEEEEESSC--
T ss_pred ------C--CCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EEEEEEEEEEEcCh--
Confidence 0 000112233 2333443322 34677888899999999988642 2111 22345667766431
Q ss_pred CCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..++.+.|. ++|+.+ .+. +..++|+++ +..+++++++++++.|++++
T Consensus 347 --------------~~~l~~~l~~~~gi~v-~~~---~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 347 --------------AAPYIARLEKEHRVLA-LQA---GPTVIRFLP-PLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp --------------SHHHHHHHHHHHCEEC-EES---STTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHCCeEE-ecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHh
Confidence 134566666 678743 332 356899997 46788899999999998764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-23 Score=207.91 Aligned_cols=330 Identities=11% Similarity=0.045 Sum_probs=211.3
Q ss_pred HHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC
Q 038818 90 LGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN 169 (486)
Q Consensus 90 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 169 (486)
+.+.+...+......|... ..++++.+.+|+++.+|.+.+. ...++|+||++|+..++.+...
T Consensus 49 v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~-----~~v~~~~g~~~a~~~~~~~~~~---------- 111 (392)
T 3b1d_A 49 VKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDK-----EDIVFVEGVVPAISIAIQAFTK---------- 111 (392)
Confidence 4444444443333334322 6788888999999888853221 2689999999999888777643
Q ss_pred CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 170 ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 170 ~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
++..|++...+|.++..+++..|. +++.+|.+. ++++.+|+++|++++++.. +.+|+++.++|++|.+-|
T Consensus 112 -~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~ 182 (392)
T 3b1d_A 112 -EGEAVLINSPVYPPFARSVRLNNR---KLVSNSLKEENGLFQIDFEQLENDIVEND-----VKLYLLCNPHNPGGRVWE 182 (392)
Confidence 456688888999999999999998 899999853 2346799999999987321 235667889999999854
Q ss_pred ---chHHHHHHHHhCceEEeeccccchhccCccchhhh---cCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHh
Q 038818 249 ---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFI---DGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 249 ---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~---~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~ 321 (486)
+++|+++|++||+++++|++|+.+........... ......+.+..+++|+++ ....+|+++++++.......
T Consensus 183 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 262 (392)
T 3b1d_A 183 REVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFK 262 (392)
Confidence 99999999999999999999987543221111111 011134467788999997 45578888876653332111
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecCCC
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAPRN 400 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~ 400 (486)
.....+ ++..........+..++. .+.+.++++.++..++++++.+.|++ +|++++. ++.
T Consensus 263 ~~~~~~-----------------~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~ 323 (392)
T 3b1d_A 263 HQQLVN-----------------NHHEVSSLGYIATETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-KPQ 323 (392)
Confidence 111101 000000111111222222 13456777788888899999999987 7788765 444
Q ss_pred eeEEE-EEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 401 FAVVC-FRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 401 ~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+.+. +.+.... ....++.+.|. ++|+.+..+..+. +..++|++++. ++++|+++++.|.
T Consensus 324 ~~~~~~i~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~e~i~~~l~~l~ 387 (392)
T 3b1d_A 324 GTYLIWLDFSDYG-------------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA---PKSLVEEICKRIV 387 (392)
Confidence 45544 4443210 11235666665 5687544433332 46789999853 4679999999998
Q ss_pred HHHH
Q 038818 477 EKLD 480 (486)
Q Consensus 477 ~~~~ 480 (486)
++++
T Consensus 388 ~~l~ 391 (392)
T 3b1d_A 388 CCLP 391 (392)
Confidence 7754
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-20 Score=185.17 Aligned_cols=253 Identities=13% Similarity=0.112 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH---
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA--- 189 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~--- 189 (486)
....++++.+++++|.+. .+++++||+|+..++.+... +++.|+++...|.+....+
T Consensus 58 ~~~~~l~~~la~~~g~~~---------~v~~~sGt~A~~~~l~~~~~-----------~gd~vi~~~~~~~~~~~~~~~~ 117 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGKA---------ALATASGHAAQFLALTTLAQ-----------AGDNIVSTPNLYGGTFNQFKVT 117 (421)
T ss_dssp HHHHHHHHHHHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEECSCCCHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHhCCCc---------eEEecCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHHH
Confidence 334456667888888752 36667779999888776532 5678889999999877765
Q ss_pred -HHcCCCCCCeEEE-ecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 190 -QIAGIDPKNFRAI-KTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 190 -~~~G~g~~~v~~v-~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
+..|+ +++.+ +.+ |+++|+++|++. +.+|+++.++|++|.+.|+++|+++|+++|+++|+|+
T Consensus 118 ~~~~g~---~~~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~ 181 (421)
T 2ctz_A 118 LKRLGI---EVRFTSREE-------RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDN 181 (421)
T ss_dssp HHHTTC---EEEECCTTC-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHcCC---EEEEECCCC-------CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 67788 88887 542 899999988753 4578899999999999999999999999999999999
Q ss_pred cc-cchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeC--chH----HHHHhcCCcccccCccCCCCCcc
Q 038818 268 AY-AGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKN--PNA----LIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 268 a~-g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~--~~~----~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
+| +.+.. ..... .++|+++.++||++++|.. .|.+++.+ ..+ +.......++|............
T Consensus 182 ~~~~~g~~-~~~~~------~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~ 254 (421)
T 2ctz_A 182 TFGMGGYL-LRPLA------WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGEL 254 (421)
T ss_dssp GGGGGGTS-CCGGG------GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGG
T ss_pred Cccccccc-CCccc------cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchh
Confidence 99 65432 11111 2689999999999998763 67676652 221 11111111111100000000000
Q ss_pred CCC---Cc--cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C---------------
Q 038818 340 DYK---DW--QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P--------------- 398 (486)
Q Consensus 340 ~~~---~~--~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~--------------- 398 (486)
.+. .+ ....+.....+.+|+.++ +.+.+..++++..++++++.+.|+++|+++++. +
T Consensus 255 ~~~~~~r~~~~~~~g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~ 332 (421)
T 2ctz_A 255 AFIVKARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYF 332 (421)
T ss_dssp HHHHHHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhc
Confidence 000 00 001222334555666555 345566778888899999999999999998763 2
Q ss_pred --CCeeEEEEEeec
Q 038818 399 --RNFAVVCFRVLP 410 (486)
Q Consensus 399 --~~~~~v~f~~~~ 410 (486)
...++++|.+.+
T Consensus 333 ~~~~g~ivsf~l~~ 346 (421)
T 2ctz_A 333 KGKPGAVLTFGLKG 346 (421)
T ss_dssp TTCCCSEEEEEETT
T ss_pred cCCCceEEEEEeCC
Confidence 235688998863
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=185.34 Aligned_cols=233 Identities=12% Similarity=0.085 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH-
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ- 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~- 190 (486)
.....++.+++++++|.+ ..++++||++|+..++.+... +++.|+++...|.+....+.
T Consensus 80 ~p~~~~l~~~la~~~g~~---------~~~~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~~~~~ 139 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAP---------AAFATASGMAAVFTSLGALLG-----------AGDRLVAARSLFGSCFVVCSE 139 (414)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHTTCC-----------TTCEEEEESCCCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCccchHHHHHHH
Confidence 344556667888888863 468999999998877766532 56778888899988766654
Q ss_pred ---HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 191 ---IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 191 ---~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
..|+ +++.+|.+ |+++|++++++. +.+|+++.++|++|.+.|+++|+++|+++|+++++|+
T Consensus 140 ~~~~~g~---~~~~v~~~-------d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe 203 (414)
T 3ndn_A 140 ILPRWGV---QTVFVDGD-------DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDN 203 (414)
T ss_dssp HHHHTTC---EEEEECTT-------CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCc---EEEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEEC
Confidence 4888 88888764 899999988653 3478889999999999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
+|+.+....+. . .++|.++.+++|+++++.. +|+++.+++.. .+.+.......
T Consensus 204 ~~~~~~~~~~~-~------~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~-~~~l~~~~~~~----------------- 258 (414)
T 3ndn_A 204 VFATPLLQQGF-P------LGVDVVVYSGTKHIDGQGRVLGGAILGDREYI-DGPVQKLMRHT----------------- 258 (414)
T ss_dssp TTTHHHHCCCG-G------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHH-TTHHHHHHHHH-----------------
T ss_pred CCcccccCCch-h------cCCCeEeccCCccccCCCCceEEEEEECHHHH-HHHHHHHHHHc-----------------
Confidence 99865443321 1 1689999999999987542 67777655422 11111000000
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeEEEEEe
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAVVCFRV 408 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v~f~~ 408 (486)
+.....+.+|..++ +.+.+..++++..++++++.+.|++.|+++.+..| ..++++|.+
T Consensus 259 ---g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l 333 (414)
T 3ndn_A 259 ---GPAMSAFNAWVLLK--GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFAL 333 (414)
T ss_dssp ---CCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred ---CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEE
Confidence 11234455666665 45677888899999999999999999988654332 245788887
Q ss_pred ec
Q 038818 409 LP 410 (486)
Q Consensus 409 ~~ 410 (486)
.+
T Consensus 334 ~~ 335 (414)
T 3ndn_A 334 DC 335 (414)
T ss_dssp CS
T ss_pred cC
Confidence 54
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=182.03 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH---
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA--- 188 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a--- 188 (486)
.....++++++++++|.+ ..+++++|++|+..++.+... +++.|+++...|.+....
T Consensus 58 ~~~~~~l~~~la~~~g~~---------~~i~~~sG~~ai~~~~~~~~~-----------~gd~vl~~~~~y~~~~~~~~~ 117 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA---------GSAAFGSGMGAISSSTLAFLQ-----------KGDHLIAGDTLYGCTVSLFTH 117 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHTTTCC-----------TTCEEEEESSCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---------eEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHH
Confidence 334455667788888875 357778889999877765432 566788888999886665
Q ss_pred -HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 189 -AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 189 -~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
++..|+ +++.+|. .|+++|+++|+++ +.+|+++.++|++|.+.|+++|+++|+++|+++++|+
T Consensus 118 ~~~~~g~---~~~~v~~-------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~ 181 (389)
T 3acz_A 118 WLPRFGI---EVDLIDT-------SDVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDA 181 (389)
T ss_dssp HHHHTTC---EEEEECT-------TCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHcCC---EEEEECC-------CCHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 577888 8888875 3899999988653 3578889999999999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
+|+.+....+ .. .++|.++.++||++++|.+ +|+++.++++......... .+.
T Consensus 182 ~~~~~~~~~~-~~------~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~-~~~----------------- 236 (389)
T 3acz_A 182 TFTSPCFLKP-LE------LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYR-KDA----------------- 236 (389)
T ss_dssp TTTCTTTCCG-GG------TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHH-HHH-----------------
T ss_pred CCccccccCc-cc------cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHH-Hhc-----------------
Confidence 9987653222 11 2689999999999999877 6888887733332211100 000
Q ss_pred ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 038818 346 ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE 394 (486)
Q Consensus 346 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 394 (486)
+.....+..|..++.+ +.+..++++..++++.+.+.|++++.++
T Consensus 237 ---g~~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~~~l~~~~~v~ 280 (389)
T 3acz_A 237 ---GSLMAPMDAFLCARGM--KTLPIRMQIHMENGLKVAKFLEQHEKIV 280 (389)
T ss_dssp ---CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred ---CCCCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 0012334556666544 4455667777888888888888876554
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=190.30 Aligned_cols=237 Identities=10% Similarity=0.099 Sum_probs=162.6
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCC
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGID 195 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g 195 (486)
.++.+.+++++|.+.. .++++|+|.||..++.+... +++.|+++..+|.|+..++...|.
T Consensus 198 ~eaE~~lA~~fGa~~a--------~~v~nGts~An~~ai~al~~-----------pGD~VLv~r~~H~S~~~~l~lsGa- 257 (715)
T 3n75_A 198 KEAEQYIARVFNADRS--------YMVTNGTSTANKIVGMYSAP-----------AGSTILIDRNCHKSLTHLMMMSDV- 257 (715)
T ss_dssp HHHHHHHHHHHTCSEE--------EEESSHHHHHHHHHHHHHCC-----------TTCEEEEESSCCHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHhCCCCc--------eEECcHHHHHHHHHHHHhCC-----------CCCEEEECCCccHHHHHHHHHcCC-
Confidence 3455789999998753 45666667898777766543 788899999999999999999999
Q ss_pred CCCeEEEecCCCCCcc----c-----CHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 196 PKNFRAIKTTKSSSFT----L-----TPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~----~-----d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
++++++.+.+ ++. + |+++|+++|++..+ ...|.+|+++.+ |++|.+.|+++|+++|++++ ++||
T Consensus 258 --~pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livD 330 (715)
T 3n75_A 258 --TPIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp --EEEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEE
T ss_pred --EEEEEecccc-ccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEc
Confidence 9999987642 333 3 89999999986432 122457888888 89999999999999998763 8999
Q ss_pred ccccchhccCccchhhhcCCC---CCCce---eeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 267 AAYAGSACICPEFRHFIDGIE---GADSF---SLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~---~aDsi---~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
+||++++.+.+.++.. ..+. .+|.+ +.++||+++++.++|++++++.-.. ..+.....++...
T Consensus 331 EAH~~~~~f~~~~~~~-~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~-~~~~~~~~~~~ST--------- 399 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGK-CGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNE-ETFNEAYMMHTTT--------- 399 (715)
T ss_dssp CTTCTTGGGSGGGTTS-STTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCH-HHHHHHHHHTSCS---------
T ss_pred cccccccccCCccccc-cccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhH-HHHHHHHHhhcCC---------
Confidence 9999876555544321 1121 36876 8999999999989999999875211 1111111111110
Q ss_pred CCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC------eEEecC
Q 038818 341 YKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR------FEIVAP 398 (486)
Q Consensus 341 ~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~------~~~~~~ 398 (486)
+-+. ...++-.+++.+-.+.-.++.++..++++++++.|+++++ |+++.+
T Consensus 400 --------Spsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~ 456 (715)
T 3n75_A 400 --------SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQP 456 (715)
T ss_dssp --------SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSC
T ss_pred --------CchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCc
Confidence 0011 1122333444443222245789999999999999987753 677654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=180.86 Aligned_cols=297 Identities=13% Similarity=0.065 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+++++++|. + ..++++|||+|+..++.+++.......+.. .++..|++...+|++....+..+
T Consensus 78 ~~~~~l~~~la~~~g~--~-------~v~~~~~gt~a~~~al~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~ 147 (392)
T 3ruy_A 78 DQLGPWYEKVAKLTNK--E-------MVLPMNTGAEAVETAIKTARRWAYDVKKVE-ANRAEIIVCEDNFHGRTMGAVSM 147 (392)
T ss_dssp TTHHHHHHHHHHHHTC--S-------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC-TTCCEEEEETTCCCCSSHHHHHT
T ss_pred HHHHHHHHHHHHhcCC--C-------EEEEeCcHHHHHHHHHHHHHHhhhhccCCC-CCCcEEEEEcCCcCCCCHhhhhc
Confidence 3445667888998882 2 589999999999999988765421111110 13456777767776544444333
Q ss_pred CCC-C---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 193 GID-P---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 193 G~g-~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
+.. . ..+..++. .|+++|+++|+++ +.+|+++.++|++|.+.| +++|+++|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~ 214 (392)
T 3ruy_A 148 SSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKEALEVCKK 214 (392)
T ss_dssp CSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCCTT------EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHT
T ss_pred cCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhccC------eEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence 221 0 02334432 2899999998732 457888889999999998 9999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
||+++|+|++|+++............++ ..|.++++ |++++. ..+|+++.+++ .. +.+.. ...
T Consensus 215 ~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~~~S--K~l~gG~~~~G~~~~~~~-~~-~~~~~---~~~-------- 278 (392)
T 3ruy_A 215 ENVLFVADEIQTGLGRTGKVFACDWDNV-TPDMYILG--KALGGGVFPISCAAANRD-IL-GVFEP---GSH-------- 278 (392)
T ss_dssp TTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTTSCCEEEEECHH-HH-TTCCT---TSS--------
T ss_pred cCCEEEEeechhCCCccccchhhhccCC-CCCEEEEc--hhhhCChhhhEEEEECHH-HH-hhhcc---CCc--------
Confidence 9999999999965322111111111122 46777775 987764 45888877542 22 11110 000
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC--CCeEEecCCCeeEEEEEeecCCCCC
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD--NRFEIVAPRNFAVVCFRVLPSASGL 415 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~v~f~~~~~~~~~ 415 (486)
..+.....+.+.++...+..-..++..++..++++++.+.|+++ +.+... ++..+++.+.+...
T Consensus 279 ---------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~~---- 344 (392)
T 3ruy_A 279 ---------GSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNEP---- 344 (392)
T ss_dssp ---------CCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESSC----
T ss_pred ---------CCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcch----
Confidence 00001233333333333211112567788889999999999887 334433 33456667765431
Q ss_pred CCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..++.+.|.++|+. +.+. +..++|+++. ..++++|++++++.|++++
T Consensus 345 ------------~~~l~~~l~~~gi~-v~~~---~~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 345 ------------ARPYCEQLKAAGLL-CKET---HENVIRIAPP-LVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp ------------SHHHHHHHHTTTEE-CCCB---TTTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHCCcE-EecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 23566777777864 3332 3568999974 5778889999999998865
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-20 Score=186.08 Aligned_cols=307 Identities=12% Similarity=0.060 Sum_probs=197.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS 183 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 183 (486)
.|...+...++++.+.+|+.+.++.+++ ..++|+|+++++.. +..... +++.|+++..+|.
T Consensus 93 ~y~~~~g~~~l~~~ia~~~~~~~~~~~~-------~i~~t~G~~~al~~-l~~l~~-----------~gd~Vl~~~p~y~ 153 (432)
T 3ei9_A 93 GYGAEQGAKPLRAAIAKTFYGGLGIGDD-------DVFVSDGAKCDISR-LQVMFG-----------SNVTIAVQDPSYP 153 (432)
T ss_dssp CCCCTTCCHHHHHHHHHHHHTTTTCCGG-------GEEEESCHHHHHHH-HHHHHC-----------TTCCEEEEESCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCcc-------eEEECCChHHHHHH-HHHHcC-----------CCCEEEEeCCCCH
Confidence 4544456688999999998875565554 78999999887754 332221 5667888999999
Q ss_pred HHHHHHHHcCCCC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chH
Q 038818 184 ALQKAAQIAGIDP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGP 251 (486)
Q Consensus 184 s~~~a~~~~G~g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~ 251 (486)
++..+++..|... .+++.+|++..+++..|++. ...+.+|+++.++|++|.+-+ +++
T Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~v~l~~p~NPtG~~~~~~~l~~ 222 (432)
T 3ei9_A 154 AYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----------VGRTDIIFFCSPNNPTGAAATREQLTQ 222 (432)
T ss_dssp HHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----------CCCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----------CCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 9999999888421 26888998753334455332 012346777899999998854 777
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccC-CCCcceEEEeeCchH------HHHHhc
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNA------LIKALS 322 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~------~~~~~~ 322 (486)
|+++|++||+++++|++|+.+.... ..... +.+....+.+..+++|+++ ....+|+++.+++.. +...+.
T Consensus 223 l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 301 (432)
T 3ei9_A 223 LVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFN 301 (432)
T ss_dssp HHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHH
T ss_pred HHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHH
Confidence 7888999999999999998754321 11111 1122245577889999998 555689888876541 011111
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
....+.. .....+...+++..+ +.+.+.++.++..++++++.+.|+++ ++++..+.
T Consensus 302 ~~~~~~~--------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 360 (432)
T 3ei9_A 302 RIICTCF--------------------NGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGK 360 (432)
T ss_dssp HHHHHSC--------------------CCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECS
T ss_pred HHhcccc--------------------CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCC
Confidence 0000000 011234444444444 33567788888999999999999987 78877555
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
....+.+.+.... ..++.+.+.+ .|+.+.++..+ .+.+++|+++. +++++|+++++.|+
T Consensus 361 ~~~~~~~~~~~~~---------------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~---~~~e~l~~~l~rl~ 422 (432)
T 3ei9_A 361 NAPYVWVHFPNQS---------------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAF---GHRENILEACRRFK 422 (432)
T ss_dssp SSSEEEEECTTSC---------------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCC---------------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEec---CCHHHHHHHHHHHH
Confidence 5556666654211 2344555554 47754443322 23678999973 47889999999998
Q ss_pred HHHH
Q 038818 477 EKLD 480 (486)
Q Consensus 477 ~~~~ 480 (486)
+.-.
T Consensus 423 ~~~~ 426 (432)
T 3ei9_A 423 QLYK 426 (432)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 7543
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=185.41 Aligned_cols=284 Identities=12% Similarity=0.086 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH----H
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA----Q 190 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~----~ 190 (486)
..++++.+++++|.+ ..++++||++|+..++.+... +++.|+++...|.+....+ +
T Consensus 84 ~~~le~~lA~l~g~~---------~~i~~ssGt~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~~~~~~l~ 143 (415)
T 2fq6_A 84 HFSLQQAMCELEGGA---------GCVLFPCGAAAVANSILAFIE-----------QGDHVLMTNTAYEPSQDFCSKILS 143 (415)
T ss_dssp HHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHTTCC-----------TTCEEEEETTSCHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhCCC---------eEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHHHHH
Confidence 334556678888864 357778999999877765422 5677888889998876554 3
Q ss_pred HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHH--hCceEEeecc
Q 038818 191 IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKR--YSIWVHVDAA 268 (486)
Q Consensus 191 ~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~--~g~~lhvD~a 268 (486)
..|+ +++.++.+ |+++|+++|+++ +.+|+++.++|++|.+.|+++|+++|++ +|+++|+|++
T Consensus 144 ~~G~---~v~~v~~~-------d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 144 KLGV---TTSWFDPL-------IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp GGTC---EEEEECTT-------CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECT
T ss_pred HcCc---EEEEECCC-------CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECC
Confidence 4577 88888653 788999988754 3578889999999999999999999999 9999999999
Q ss_pred ccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 269 YAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
|+.+....+ .. .++|.++.++||+++++.+ .|+++.+++ .+...... ...
T Consensus 208 ~a~~~~~~p-~~------~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~-~~~------------------- 259 (415)
T 2fq6_A 208 WAAGVLFKA-LD------FGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLREN-AYL------------------- 259 (415)
T ss_dssp TTTTTSSCG-GG------GTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHH-HHH-------------------
T ss_pred CcccccCCc-cc------cCCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHH-HHh-------------------
Confidence 976533222 11 1689999999999998754 677777654 32221110 000
Q ss_pred cCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC----------------CCeeEEEEEee
Q 038818 347 TLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP----------------RNFAVVCFRVL 409 (486)
Q Consensus 347 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~----------------~~~~~v~f~~~ 409 (486)
.+-.......|..++. .+.+..++++..+++..+++.|++.|.++-+ .+ ...++++|.+.
T Consensus 260 -~G~~~~~~~a~~~~~~--l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~ 336 (415)
T 2fq6_A 260 -MGQMVDADTAYITSRG--LRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK 336 (415)
T ss_dssp -TTCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES
T ss_pred -cCCCCCHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 0101123445555443 4667778888889999999999988776532 22 13578899886
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHh------cCc---EEEe--ee----eE----CC--EeEEEEEecCCCCcHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINA------SGQ---LYVS--HG----MV----AG--IYFIRFAVGATLTEDRHV 468 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~g~---~~~~--~~----~~----~~--~~~lR~~~~~~~tt~~di 468 (486)
+... .+...++.+.+.. .|. .... +. .. .+ .+.+|+|++ ..+++++|
T Consensus 337 g~~~-----------~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G-~e~~~d~i 404 (415)
T 2fq6_A 337 KKLN-----------NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIG-LEDVDDLI 404 (415)
T ss_dssp SCCC-----------HHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECC-SSCHHHHH
T ss_pred CCCC-----------HHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEec-CCCHHHHH
Confidence 4100 1223444444321 121 1111 10 00 12 468999995 67788899
Q ss_pred HHHHHHHHH
Q 038818 469 IAAWKVVQE 477 (486)
Q Consensus 469 d~~i~~l~~ 477 (486)
+.+.++|++
T Consensus 405 ~~l~~al~~ 413 (415)
T 2fq6_A 405 ADLDAGFAR 413 (415)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999888864
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=185.04 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH----HH
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK----AA 189 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~----a~ 189 (486)
...++++.+++++|.+. .+++++||+|+..++. ... +++.|+++...|.+... .+
T Consensus 56 ~~~~lr~~la~~~g~~~---------~i~~~sGt~a~~~al~-~~~-----------~gd~Vi~~~~~y~~~~~~~~~~~ 114 (393)
T 1n8p_A 56 NRENLERAVAALENAQY---------GLAFSSGSATTATILQ-SLP-----------QGSHAVSIGDVYGGTHRYFTKVA 114 (393)
T ss_dssp HHHHHHHHHHHHTTCSE---------EEEESCHHHHHHHHHH-TSC-----------SSCEEEEESSCCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhCCCc---------EEEECChHHHHHHHHH-HcC-----------CCCEEEEeCCCchHHHHHHHHHH
Confidence 34456778889988752 4666667999987776 322 55677788888876554 34
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh----CceEEe
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY----SIWVHV 265 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~----g~~lhv 265 (486)
+..|+ +++.+|++ | ++|+++|+++ +.+|+++.++|++|.+.|+++|+++|+++ |+++|+
T Consensus 115 ~~~G~---~v~~v~~~-------d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~liv 177 (393)
T 1n8p_A 115 NAHGV---ETSFTNDL-------L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV 177 (393)
T ss_dssp TTTCS---CCEEESSH-------H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEE
T ss_pred HHcCc---EEEEeCCC-------h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEE
Confidence 45677 88888863 6 8888887642 45788899999999999999999999999 999999
Q ss_pred eccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cc-eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 266 DAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DC-CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 266 D~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~-g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
|++|+.+.... ... + ++|.++.++||+++++. .. |+++.+++.......... .
T Consensus 178 D~a~~~~~~~~--~~~----~-~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~-----~------------- 232 (393)
T 1n8p_A 178 DNTFLSPYISN--PLN----F-GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ-----N------------- 232 (393)
T ss_dssp ECTTTHHHHCC--GGG----G-TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-----H-------------
T ss_pred eCCccccccCC--HHH----c-CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH-----H-------------
Confidence 99998765431 111 1 68999999999988553 14 777776554433221100 0
Q ss_pred ccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEe-cC-----C------------C-eeE
Q 038818 344 WQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNR-FEIV-AP-----R------------N-FAV 403 (486)
Q Consensus 344 ~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~-~~-----~------------~-~~~ 403 (486)
..+........|..++.+ +.+...+++..++++.+.+.|++.+. +.-+ .+ + . .++
T Consensus 233 ---~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i 307 (393)
T 1n8p_A 233 ---AIGAIPSPFDAWLTHRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGM 307 (393)
T ss_dssp ---HHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSE
T ss_pred ---hcCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccE
Confidence 001112334455544433 44666777788889999999988866 5432 22 1 2 568
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE---------EEeee--eE----------CC--EeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL---------YVSHG--MV----------AG--IYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---------~~~~~--~~----------~~--~~~lR~~~~~ 460 (486)
++|.+.+. .....++.+.+...++. ...+. .. .| .+.+|+|++
T Consensus 308 ~~~~l~~~-------------~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g- 373 (393)
T 1n8p_A 308 ISFRIKGG-------------AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG- 373 (393)
T ss_dssp EEEEESSC-------------HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-
T ss_pred EEEEeCCc-------------HHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc-
Confidence 88888642 22344555554322211 01110 00 02 468999995
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~ 479 (486)
..+++++|+.+.++|+++.
T Consensus 374 ~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 374 IEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 6788889999999998753
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=186.47 Aligned_cols=326 Identities=11% Similarity=0.032 Sum_probs=201.3
Q ss_pred HHHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCc--ceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 89 FLGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTG--GGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 89 ~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~--~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
.+.+.+...+.. ....|....+..++.+.+.+++....+.+.. .. ..++|+|||+|+..++......
T Consensus 71 ~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~~~i~~t~G~t~al~~~~~~~~~~----- 140 (420)
T 4f4e_A 71 AVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA-----AGRVVTAQALGGTGALKIGADFLRTL----- 140 (420)
T ss_dssp HHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEEEHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc-----cCceEEEECCccHHHHHHHHHHHHHh-----
Confidence 344444444433 2345555556678888888887665442101 12 5799999999998775432211
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
.+++.|+++..+|.++...++..|. +++.+|+..++++.+|+++|++++++. .....+++.+.++|+||.
T Consensus 141 ----~~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~ 210 (420)
T 4f4e_A 141 ----NPKAKVAISDPSWENHRALFDMAGF---EVVAYPYYDAKTNGVNFDGMLAALNGY---EPGTIVVLHACCHNPTGV 210 (420)
T ss_dssp ----CTTCCEEEEESCCHHHHHHHHHTTC---CEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCC
T ss_pred ----CCCCEEEEeCCCcHhHHHHHHHcCC---eEEEeeeeccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCC
Confidence 0566788899999999999999999 999999832235799999999998732 122467888999999999
Q ss_pred c---CCchHHHHHHHHhCceEEeeccccchhccCc-cchh--hhcCCCCCCceeeccccccCC-CCcceEEEe--eCchH
Q 038818 246 V---DPLGPLCDIAKRYSIWVHVDAAYAGSACICP-EFRH--FIDGIEGADSFSLNAHKWFFT-TLDCCCLWV--KNPNA 316 (486)
Q Consensus 246 i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~-~~~~--~~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~--~~~~~ 316 (486)
+ +++++|+++|++||+++++|++|+++....+ .... .+.+....+.+..+++|.++. ...+|++++ .++..
T Consensus 211 ~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~ 290 (420)
T 4f4e_A 211 DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDE 290 (420)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHH
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHH
Confidence 8 4577999999999999999999976554211 1111 111222445777889999984 455788764 34433
Q ss_pred HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHHh
Q 038818 317 LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLFQELVG 388 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~ 388 (486)
............... .. ....+..+++...+. .+.++++.++..++++++.+.|+
T Consensus 291 ~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 353 (420)
T 4f4e_A 291 AARVLSQLKRVIRTN--------------YS---NPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLK 353 (420)
T ss_dssp HHHHHHHHHHHHHTT--------------TS---SCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------------cC---CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111000000000 00 011222222222221 34467788888899999999998
Q ss_pred CC---CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcH
Q 038818 389 GD---NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTED 465 (486)
Q Consensus 389 ~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~ 465 (486)
++ +++++.. +..+++.|.-.+ . +.+.+.+.+.|+. +.+. .|+++. ..++
T Consensus 354 ~~~~~~~~~~~~-~~~g~~~~~~~~--------------~---~~~~~~l~~~gI~-v~~~-------~Ris~~--~~~~ 405 (420)
T 4f4e_A 354 AAGIERDFSFIN-AQRGMFSYSGLT--------------S---AQVDRLREEFGIY-AVST-------GRICVA--ALNT 405 (420)
T ss_dssp HTTCSSCCTHHH-HSCSSEEECCCC--------------H---HHHHHHHHHHCEE-CCTT-------SEEEGG--GCCT
T ss_pred hcCCCCCceeEC-CCccEEEEeCCC--------------H---HHHHHHHHhCCEE-ecCC-------CeEEEe--cCCH
Confidence 76 3565443 334454442111 1 2344455566864 3332 299985 3345
Q ss_pred HHHHHHHHHHHHHH
Q 038818 466 RHVIAAWKVVQEKL 479 (486)
Q Consensus 466 ~did~~i~~l~~~~ 479 (486)
++|+++++.|++++
T Consensus 406 ~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 406 RNLDVVANAIAAVL 419 (420)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 57999999998875
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=183.64 Aligned_cols=338 Identities=13% Similarity=0.071 Sum_probs=196.4
Q ss_pred HHHHHHHHhhcCCCc-----cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 88 GFLGEMLSSGFNVVG-----FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~-----~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
..+.+.+...+..+. ..|...+...++.+.+.+|+.+.+|++.. ...+++|+|||+|+..++.+....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~t~al~~~~~~l~~~-- 121 (417)
T 3g7q_A 49 DYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIE-----PQNIALTNGSQSAFFYLFNLFAGR-- 121 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCC-----GGGEEEESCHHHHHHHHHHHHSBC--
T ss_pred HHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCC-----cccEEEeCCcHHHHHHHHHHHcCC--
Confidence 445555555442221 24555556678999999999888876532 137999999999998887776431
Q ss_pred HHccccCCCCeEEEec-CCCchHHHHHHHHc----CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEee
Q 038818 163 NEIGRENISRLVVYGS-DQTHSALQKAAQIA----GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCAT 237 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s-~~~H~s~~~a~~~~----G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~ 237 (486)
|.++ .+..|+++ ..+|..+...+... +.+. .+..++.+. ..+.+|+++|+ +.+ .+.+|+++
T Consensus 122 ---gd~~-~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~d~~~l~--~~~------~~~~v~~~ 187 (417)
T 3g7q_A 122 ---RADG-STKKVLFPLAPEYIGYADSGLEDDLFVSARP-NIELLPEGQ-FKYHVDFEHLH--IGE------ETGMICVS 187 (417)
T ss_dssp --------CCBEEEESSCCCHHHHHC-----CCEEECCC-EEEEEGGGE-EEEECCGGGCC--CCT------TEEEEEEE
T ss_pred ---CccC-CcceEEEeCCCccccchhhccchhhhccccC-cccccCCcc-cccccCHHHhc--ccc------CceEEEEC
Confidence 0000 11166676 66777766555322 2211 333444321 13578999998 332 24578889
Q ss_pred cCCccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc
Q 038818 238 VGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 238 ~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
.++|++|.+-| +++|+++|++||+++++|++|+.+.... .+..........+.+..+++|++.....+|+++.+ +
T Consensus 188 ~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~ 265 (417)
T 3g7q_A 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI-IFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIAN-D 265 (417)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECC-H
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc-cccccccCCCCCEEEEEechhccCCCcceEEEEeC-H
Confidence 99999999988 8999999999999999999997532111 11111111234567788999975555668877664 3
Q ss_pred hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHH----HHH-HHHHHHHHHHHHHHHHhC
Q 038818 315 NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVAN----LRN-FLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 315 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g----~~~-~~~~~~~~a~~l~~~L~~ 389 (486)
............+. .....+...++...+.... ..+ +.++..++.+++.+.|.+
T Consensus 266 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (417)
T 3g7q_A 266 KTITAIANMNGIIS---------------------LAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRR 324 (417)
T ss_dssp HHHHHHHHHHHHHC---------------------CCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccee---------------------eCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111000000 0112233333333321111 222 444556666677777755
Q ss_pred -CC--CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-C--------EeEEEEE
Q 038818 390 -DN--RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-G--------IYFIRFA 457 (486)
Q Consensus 390 -~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~--------~~~lR~~ 457 (486)
++ ++++..+.....+.+.+.... . ...++.+.+.++|+.+.++..+. + ..++|++
T Consensus 325 ~l~~~~~~~~~~~~g~~~~~~~~~~~---------~----~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis 391 (417)
T 3g7q_A 325 YLSEERCLIHKPEGAIFLWLWFKDLP---------I----TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMN 391 (417)
T ss_dssp HCCTTTCEEECCCBSSEEEEECTTCS---------S----CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEE
T ss_pred hcccCCceeeCCCcceEEEEEcCCCC---------C----CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEE
Confidence 44 467664444445555554311 0 12356667777787544433221 1 4689999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 458 VGATLTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
+. . ++++|+++++.|.++++++.++
T Consensus 392 ~~--~-~~~~i~~~~~~l~~~l~~~~~~ 416 (417)
T 3g7q_A 392 YV--P-EPDKIEAGVKILAEEIERAWRE 416 (417)
T ss_dssp SC--S-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ec--C-CHHHHHHHHHHHHHHHHHHHhc
Confidence 85 2 7889999999999999887653
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=184.81 Aligned_cols=327 Identities=13% Similarity=0.068 Sum_probs=203.1
Q ss_pred HHHHHHHHhhc-C-CCccccccChhhHHHHHHHHHHHHHHcCC--CCCCccCCCcceEE--cCCchHHHHHHHHHHHHHH
Q 038818 88 GFLGEMLSSGF-N-VVGFNWMSSPAATELENIVMDWLGEMLKL--PKSFLFSGTGGGVI--QGTTCEAILCTLAAARDQI 161 (486)
Q Consensus 88 ~~~~~~l~~~~-n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~--~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~ 161 (486)
..+.+.+.... + .....|...+...++++.+.+++....|. +.+ ..++ |+||++|+..++..++..
T Consensus 51 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-------~v~~~~t~gg~~a~~~~~~~~~~~- 122 (412)
T 1ajs_A 51 PVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEK-------RVGGVQSLGGTGALRIGAEFLARW- 122 (412)
T ss_dssp HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-------CEEEEEEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCC-------cEEEEECCCcHHHHHHHHHHHHHh-
Confidence 34555555554 2 12334544555677887777777554443 222 6888 999999998876543321
Q ss_pred HHHccccCCCC-----eEEEecCCCchHHHHHHHHcCCCCCC-eEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEE
Q 038818 162 LNEIGRENISR-----LVVYGSDQTHSALQKAAQIAGIDPKN-FRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLC 235 (486)
Q Consensus 162 ~~~~~~~~~~~-----~~v~~s~~~H~s~~~a~~~~G~g~~~-v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv 235 (486)
. ++ +.|+++..+|.++...++..|. + ++.+|.++.+++.+|+++|++++++. +....+|+
T Consensus 123 -~-------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~ 188 (412)
T 1ajs_A 123 -Y-------NGTNNKDTPVYVSSPTWENHNGVFTTAGF---KDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVL 188 (412)
T ss_dssp -S-------SSSSCCCSCEEEEESCCTHHHHHHHHTTC---SCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEE
T ss_pred -C-------cCcCCCCCeEEEcCCCcHHHHHHHHHcCC---ceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEE
Confidence 0 34 5677888899999999999999 9 99999853235789999999999752 11245677
Q ss_pred eecCCccccccC---CchHHHHHHHHhCceEEeeccccchhccC---c--cchhhhcCCCCCCceeeccccccCC-CCcc
Q 038818 236 ATVGTTAITTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACIC---P--EFRHFIDGIEGADSFSLNAHKWFFT-TLDC 306 (486)
Q Consensus 236 ~~~gtt~~G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~---~--~~~~~~~~~~~aDsi~~~~hK~l~~-p~~~ 306 (486)
.+.++|++|.+- ++++|+++|++||+++++|++|.++.... + .... +.....-+.+..+++|.++. ...+
T Consensus 189 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~ri 267 (412)
T 1ajs_A 189 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY-FVSEGFELFCAQSFSKNFGLYNERV 267 (412)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHH-HHHTTCCEEEEEECTTTSCCGGGCE
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHH-HhccCCcEEEEEecccccCCCCcce
Confidence 899999999984 46789999999999999999987654321 1 1111 11111123668899998875 3347
Q ss_pred eEEEe--eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHH
Q 038818 307 CCLWV--KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSH 376 (486)
Q Consensus 307 g~~~~--~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~ 376 (486)
|++++ ++++.+.........+... +..+ ...+..+++...+. .+.++++.++.
T Consensus 268 G~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (412)
T 1ajs_A 268 GNLTVVAKEPDSILRVLSQMQKIVRV--------------TWSN---PPAQGARIVARTLSDPELFHEWTGNVKTMADRI 330 (412)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHT--------------TTSS---CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc--------------ccCC---CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 88888 2443211111000000000 0000 12233333333331 23667788888
Q ss_pred HHHHHHHHHHHhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeE
Q 038818 377 VRMAQLFQELVGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYF 453 (486)
Q Consensus 377 ~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~ 453 (486)
.++++++.+.|++++ ++++.. +..+.+.|. .. . ...+...+.+.|+. +.+ .
T Consensus 331 ~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~-------------~--~~~~~~~l~~~gv~-v~~-------~ 384 (412)
T 1ajs_A 331 LSMRSELRARLEALKTPGTWNHIT-DQIGMFSFT--GL-------------N--PKQVEYLINQKHIY-LLP-------S 384 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHH-HCCSSEEEC--CC-------------C--HHHHHHHHHTTCEE-CCT-------T
T ss_pred HHHHHHHHHHHHhhCCCCCeeEEc-CCCceEEEe--CC-------------C--HHHHHHHHHhCCEE-ecC-------C
Confidence 899999999998874 365543 333444442 11 1 12334444566764 333 2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+|++++. .++++++++++.|+++++++
T Consensus 385 ~Ris~~~--~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 385 GRINMCG--LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp SEEEGGG--CCTTTHHHHHHHHHHHHHHC
T ss_pred cEEEeee--CCHHHHHHHHHHHHHHHHhc
Confidence 6999862 46779999999999988653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=180.57 Aligned_cols=296 Identities=14% Similarity=0.054 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+++++++|. + ..++|+|||+|+..++.+++..... +..+ ++.+|+.+...|.+...+++.
T Consensus 81 ~~~~~~l~~~la~~~g~--~-------~v~~~~gg~~a~~~al~~~~~~~~~--~~~~-~~~vi~~~~~yh~~~~~~~~~ 148 (397)
T 2ord_A 81 NRPQMELAELLSKNTFG--G-------KVFFANTGTEANEAAIKIARKYGKK--KSEK-KYRILSAHNSFHGRTLGSLTA 148 (397)
T ss_dssp EHHHHHHHHHHHHTTTS--C-------EEEEESSHHHHHHHHHHHHHHHHHH--HCTT-CCEEEEEBTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC--C-------eEEEeCCHHHHHHHHHHHHHHHhhc--CCCC-CceEEEEcCCcCCCchhhhhc
Confidence 34556677888888873 2 5899999999999988877642111 0000 234555555667777767777
Q ss_pred cCCC---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc----cCCchHHHHHHHH
Q 038818 192 AGID---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT----VDPLGPLCDIAKR 258 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~----idpl~~I~~i~~~ 258 (486)
.|.. ...++.+|. .|+++|++++++. +.+|+++.++|++|. .+++++|+++|++
T Consensus 149 ~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~ 215 (397)
T 2ord_A 149 TGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSED------VCAVFLEPIQGESGIVPATKEFLEEARKLCDE 215 (397)
T ss_dssp SBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTT------EEEEEECSEECTTTCEECCHHHHHHHHHHHHH
T ss_pred cCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhcC------eEEEEEecccCCCCcccCCHHHHHHHHHHHHH
Confidence 7761 001666664 2899999988642 457888889999998 3789999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
||+++++|++|+++...........-+. ..|.+++ +|+++++.++|+++++++- . .+. .. ..
T Consensus 216 ~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~~~~~~~-~--~l~--~~--~~-------- 277 (397)
T 2ord_A 216 YDALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAVIVNERA-N--VLE--PG--DH-------- 277 (397)
T ss_dssp HTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECSTT-C--CCC--TT--SS--------
T ss_pred cCCEEEEEecccCCccCccchhhhhhCC-CCCeeee--ccccCCCcCeEEEEEchHh-c--ccC--CC--Cc--------
Confidence 9999999999975322111111001122 3676655 7999977789999887652 1 111 00 00
Q ss_pred cCCCCccccCCCCCCchH---HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEeecC
Q 038818 339 VDYKDWQITLSRRFRALK---LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRVLPS 411 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~ 411 (486)
.. +. ....+. +..+++.+.. +++.++..++++++.+.|+++ +.+... ++..+++.|.+...
T Consensus 278 --~~--~~----~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 345 (397)
T 2ord_A 278 --GT--TF----GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV-RGMGLMIGIQFREE 345 (397)
T ss_dssp --CC--SS----TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTT
T ss_pred --CC--CC----CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE-EEEeEEEEEEECCh
Confidence 00 00 112233 3333443332 356677778888888888654 322222 23345667766432
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 412 ASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
. ...++.+.|.++|+.+. +. +..++|+++ ...+++++++++++.|++++++
T Consensus 346 ~--------------~~~~l~~~l~~~gi~v~-~~---~~~~iRis~-~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 346 V--------------SNREVATKCFENKLLVV-PA---GNNTIRFLP-PLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp S--------------CHHHHHHHHHHTTEECE-EE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred H--------------HHHHHHHHHHHCCCEEc-cC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHhh
Confidence 1 12456677777787433 32 346899997 3577889999999999998764
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-19 Score=178.04 Aligned_cols=302 Identities=10% Similarity=0.007 Sum_probs=187.1
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH--HHHHHHHHHHHHHccccCCC--------CeEEEecCCCchHHHH
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL--CTLAAARDQILNEIGRENIS--------RLVVYGSDQTHSALQK 187 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~--~al~~a~~~~~~~~~~~~~~--------~~~v~~s~~~H~s~~~ 187 (486)
+++.++++++.+++ ..++|+|+++++. .++.+..... . + ++.|+++..+|..+..
T Consensus 75 lr~~ia~~~~~~~~-------~i~~t~G~~~al~~~~~~~~l~~~~--~------g~~~~~~~~gd~Vlv~~p~y~~~~~ 139 (423)
T 3ez1_A 75 ARALFAGYLDVKAE-------NVLVWNNSSLELQGLVLTFALLHGV--R------GSTGPWLSQTPKMIVTVPGYDRHFL 139 (423)
T ss_dssp HHHHHHHHTTSCGG-------GEEECSSCHHHHHHHHHHHHHHTCC--T------TCSSCGGGGCCEEEEEESCCHHHHH
T ss_pred HHHHHHHHhCCChh-------hEEEeCCcHHHHHHHHHHHHHhccC--C------CccccccCCCCEEEEcCCCcHHHHH
Confidence 34556666787665 7899999999986 5555443200 0 1 4678889999999999
Q ss_pred HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEe-ecCCccccccCCch---HHHHHH-HHhCce
Q 038818 188 AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA-TVGTTAITTVDPLG---PLCDIA-KRYSIW 262 (486)
Q Consensus 188 a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~-~~gtt~~G~idpl~---~I~~i~-~~~g~~ 262 (486)
.++..|. +++.+|+++ + .+|+++|++++++ ...+.+|++ ..++|++|.+-|.+ +|+++| ++||++
T Consensus 140 ~~~~~g~---~~~~v~~~~--~-g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~ 209 (423)
T 3ez1_A 140 LLQTLGF---ELLTVDMQS--D-GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFT 209 (423)
T ss_dssp HHHHHTC---EEEEEEEET--T-EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCE
T ss_pred HHHHcCC---EEEeccCCC--C-CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCE
Confidence 9999999 999999985 2 4999999999952 112445654 47899999998876 888888 999999
Q ss_pred EEeeccccchhccC---ccchhhh-----cCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCC
Q 038818 263 VHVDAAYAGSACIC---PEFRHFI-----DGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD 334 (486)
Q Consensus 263 lhvD~a~g~~~~~~---~~~~~~~-----~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~ 334 (486)
+++|++|+...+.. +.....+ .+....+.+..+++|++..+.++|+++.+++ .... +.....+.
T Consensus 210 li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~-~~~~-~~~~~~~~------ 281 (423)
T 3ez1_A 210 IFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSED-NIRW-LSKYLGAQ------ 281 (423)
T ss_dssp EEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHH-HHHH-HHHHHHHS------
T ss_pred EEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHH-HHHH-HHHHHhhh------
Confidence 99999997432211 1111111 0122455778889998777778888777543 3221 11000000
Q ss_pred CCCccCCCCccccCCCCCCchHHHHHHHHhch------HHHHHHHHHHHH----HHHHHHHHHhCCC-CeEEecCCCeeE
Q 038818 335 SKQVVDYKDWQITLSRRFRALKLWLVLRSFGV------ANLRNFLRSHVR----MAQLFQELVGGDN-RFEIVAPRNFAV 403 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~------~g~~~~~~~~~~----~a~~l~~~L~~~~-~~~~~~~~~~~~ 403 (486)
+.....+..+++...+.. +.+++..+...+ +.+.|.+.|.+++ ++++..+.....
T Consensus 282 --------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~ 347 (423)
T 3ez1_A 282 --------------SIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYF 347 (423)
T ss_dssp --------------CSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSC
T ss_pred --------------ccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEE
Confidence 001122333333333222 223333333333 3444555555564 477664544455
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-E-----CCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-V-----AGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~-----~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
+.+.+.... ...+.+.+.++|+.+.+... + .+..++|+++.. .++++|+++++.|.+
T Consensus 348 ~~~~~~~~~---------------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~--~~~~~i~~~~~~l~~ 410 (423)
T 3ez1_A 348 ISLDTAEPV---------------ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTR--PPVEEVRTAMQVVAA 410 (423)
T ss_dssp EEEEESSSC---------------HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSS--SCHHHHHHHHHHHHH
T ss_pred EEEECCCCc---------------HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCC--CCHHHHHHHHHHHHH
Confidence 666664311 23566667777875433121 1 235789999842 378899999999999
Q ss_pred HHHHHh
Q 038818 478 KLDGIL 483 (486)
Q Consensus 478 ~~~~l~ 483 (486)
+++++.
T Consensus 411 ~l~~~~ 416 (423)
T 3ez1_A 411 CIRLAT 416 (423)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-19 Score=172.52 Aligned_cols=280 Identities=9% Similarity=-0.044 Sum_probs=187.9
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++++++++|.+++ ..++|+|||+++..++.+.. ++.|+++..+|.++..+++..|+
T Consensus 54 ~lr~~la~~~~~~~~-------~i~~t~g~~~al~~~~~~l~-------------gd~Vi~~~p~~~~~~~~~~~~g~-- 111 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNN-------AILVTNGPTAAFYQIAQAFR-------------GSRSLIAIPSFAEYEDACRMYEH-- 111 (350)
T ss_dssp HHHHHHHHHTTCCGG-------GEEEESHHHHHHHHHHHHTT-------------TCEEEEEESCCHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCcCHH-------HEEEcCCHHHHHHHHHHHHC-------------CCEEEEeCCCcHHHHHHHHHcCC--
Confidence 466788888998765 78999999999977766542 34577888999999999999999
Q ss_pred CCeEEEec-CCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC-ceEEeeccccchhc
Q 038818 197 KNFRAIKT-TKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS-IWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~-d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g-~~lhvD~a~g~~~~ 274 (486)
+++.+|+ ++. ..+++ + .+.+|+++.++|++|.+-|+++|.++++.++ .++++|++|+.+..
T Consensus 112 -~~~~v~~~~~~--~~~~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~ 174 (350)
T 3fkd_A 112 -EVCFYPSNEDI--GEADF--------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTT 174 (350)
T ss_dssp -EEEEEETTSCG--GGSCC--------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCS
T ss_pred -eEEEEecCCcc--ccCcc--------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhcc
Confidence 9999999 642 24454 1 2346788999999999999999999999876 79999999976432
Q ss_pred cCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
........+ .....+.++.+++|+++ .+..+|+++. +++...........+ ...
T Consensus 175 ~~~~~~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------------~~~ 229 (350)
T 3fkd_A 175 EEVIRPADI-KGRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPW-----------------------AVN 229 (350)
T ss_dssp SCCCCGGGG-TTCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTT-----------------------CSC
T ss_pred CcchhhHHh-hcCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCCC-----------------------CCC
Confidence 211111111 11234477788999998 4467888887 444433222111000 112
Q ss_pred chHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHH
Q 038818 354 ALKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLL 432 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 432 (486)
.+..+++...+.... +.+.+++..++++++.+.|+++|++++. ++..+.+.+++... ...++.
T Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~l~ 293 (350)
T 3fkd_A 230 ALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKG---------------TAAELK 293 (350)
T ss_dssp HHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSS---------------CHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCC---------------CHHHHH
Confidence 344444444432211 3333444458899999999988899875 55556666666531 134567
Q ss_pred HHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 433 ESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 433 ~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.|.+ .|+.+..+..+. +..++|+++. +++++++++++|+++.+
T Consensus 294 ~~L~~~~gi~v~~g~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 294 KYMLEEYNMLIRDASNFRGLDESYVRITTQ----RPAQNQLFIKALETFLE 340 (350)
T ss_dssp HHHHHTTCEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCEEEEeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHH
Confidence 77777 787544333222 2578999974 66799999999998764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-18 Score=171.13 Aligned_cols=316 Identities=13% Similarity=0.053 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHc-CCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 113 ELENIVMDWLGEML-KLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~-g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
....++++.+++++ | +.. ..+++|+||++|+..++..++... . ++.+|+.+...|.+...++..
T Consensus 84 ~~~~~l~~~la~~~~~-~~~------~~v~~~~g~~~a~~~~~~~a~~~~--~------~~~vi~~~p~y~~~~~~~~~~ 148 (426)
T 1sff_A 84 EPYLELCEIMNQKVPG-DFA------KKTLLVTTGSEAVENAVKIARAAT--K------RSGTIAFSGAYHGRTHYTLAL 148 (426)
T ss_dssp HHHHHHHHHHHHHSSC-SSC------EEEEEESSHHHHHHHHHHHHHHHH--T------CCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-ccc------cEEEEeCchHHHHHHHHHHHHHhh--C------CCeEEEECCCcCCCchHhhhh
Confidence 34455667788888 4 221 168999999999998888654321 1 444555555566666667777
Q ss_pred cCCC----------CCCeEEEecCC---CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHH
Q 038818 192 AGID----------PKNFRAIKTTK---SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCD 254 (486)
Q Consensus 192 ~G~g----------~~~v~~v~~d~---~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~ 254 (486)
.|.. ...++.+|++. .+.+.+|+++|++++++.. .+..+.+|+++...+++|.+.| +++|.+
T Consensus 149 ~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~ 227 (426)
T 1sff_A 149 TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASSPAFMQRLRA 227 (426)
T ss_dssp SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHH
T ss_pred cCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCCHHHHHHHHH
Confidence 6651 01277788753 1134689999999997410 0112446666554444997777 999999
Q ss_pred HHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCC
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD 334 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~ 334 (486)
+|++||+++++|++|+++....+.......++ ..|.+ +++|+++....+|+++.+++ .. +.+.. .. .
T Consensus 228 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~di~--s~sK~~~~GlriG~~~~~~~-~~-~~l~~---~~-~---- 294 (426)
T 1sff_A 228 LCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLT--TFAKSIAGGFPLAGVTGRAE-VM-DAVAP---GG-L---- 294 (426)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEE--EECGGGGTSSCCEEEEEEHH-HH-TTSCT---TS-B----
T ss_pred HHHHcCCEEEEechhhccCcccchhhhhhcCC-CCCEE--EEcccccCCCceEEEEEcHH-HH-hhhcc---CC-c----
Confidence 99999999999999986322111111011111 36655 55699986555799988753 22 22210 00 0
Q ss_pred CCCccCCCCccccCCCCCCch---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEE
Q 038818 335 SKQVVDYKDWQITLSRRFRAL---KLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFR 407 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~~~l---~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~ 407 (486)
..+.....+ ++..+++.+..+ +..++..++++++++.|++ ++.+... ++..+++.+.
T Consensus 295 ------------~~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~ 358 (426)
T 1sff_A 295 ------------GGTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIE 358 (426)
T ss_dssp ------------CCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEE
T ss_pred ------------CcCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEE
Confidence 000011223 333344443222 3556677777777777765 4444332 2335677777
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.+.... .........++.+.|.++|+.+..+.. ...++|+++ ...+++++++++++.|+++++++
T Consensus 359 ~~~~~~~------~~~~~~~~~~l~~~l~~~gi~v~~~~~--~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 359 LFEDGDH------NKPDAKLTAEIVARARDKGLILLSCGP--YYNVLRILV-PLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EBGGGCT------TSBCHHHHHHHHHHHHHTTEECEEEST--TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCccc------cCCChHHHHHHHHHHHHCCcEEecCCC--CCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHH
Confidence 7431000 000022345677788888875433322 246899998 35778889999999999988765
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-18 Score=174.01 Aligned_cols=318 Identities=11% Similarity=-0.028 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPK-SFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~-~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
......++.++++++++... + ..++|+||++|+..++.+++... .++.+|+.....|.+...++
T Consensus 84 ~~~~~~~l~~~la~~~~~~~~~-------~v~~~~ggsea~~~al~~~~~~~--------~~~~vi~~~~~yhg~~~~~~ 148 (439)
T 3dxv_A 84 SNAPAVTLAERLLASFPGEGTH-------KIWFGHSGSDANEAAYRAIVKAT--------GRSGVIAFAGAYHGCTVGSM 148 (439)
T ss_dssp EEHHHHHHHHHHHHTTTCTTTE-------EEEEESSHHHHHHHHHHHHHHHH--------SCCEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHh--------CCCEEEEECCCCCCCcHHHH
Confidence 45667788899999986543 3 68999999999999999876532 04556666666676666555
Q ss_pred HHcCCCC--C---------CeEEEecCCCCCccc-----CHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----c
Q 038818 190 QIAGIDP--K---------NFRAIKTTKSSSFTL-----TPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----L 249 (486)
Q Consensus 190 ~~~G~g~--~---------~v~~v~~d~~~~~~~-----d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l 249 (486)
...|... - .+..+|.+. .+.. |+++|+++|++. ....+.+|+++...+++|.+.| +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l 224 (439)
T 3dxv_A 149 AFSGHSVQADAAKADGLILLPYPDPYRP--YRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGFL 224 (439)
T ss_dssp CC-------------CEEEECCCCSSSC--BTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTHH
T ss_pred hhcCCCchhhccccCCCCCCcEEcCCCc--ccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHHH
Confidence 4444310 0 013344332 1122 799999998511 1223567888888888999988 9
Q ss_pred hHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCccccc
Q 038818 250 GPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLR 329 (486)
Q Consensus 250 ~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~ 329 (486)
++|+++|++||+++++|++|+++............++ ..|.+ ++.|.+++....|+++.+++ .. +.+.. ..
T Consensus 225 ~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~~di~--s~sK~~~~G~riG~~~~~~~-~~-~~~~~---~~- 295 (439)
T 3dxv_A 225 RKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-VPDIL--VLGKGLGGGLPLSAVIAPAE-IL-DCASA---FA- 295 (439)
T ss_dssp HHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-CCSEE--EECGGGGTTSCCEEEEEEHH-HH-TSCSS---SS-
T ss_pred HHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-CCCEE--EEcchhcCCcceEEEEECHH-HH-hhhcC---CC-
Confidence 9999999999999999999986321111011111122 35666 45699987667888887543 22 11110 00
Q ss_pred CccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEE
Q 038818 330 NKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVC 405 (486)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~ 405 (486)
...+- ...+.+.+++..+..-.-+++.++..++.+++++.|.+ ++.+... ++...++.
T Consensus 296 ----------------~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~ 357 (439)
T 3dxv_A 296 ----------------MQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACG 357 (439)
T ss_dssp ----------------CCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEE
T ss_pred ----------------cCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEE
Confidence 00111 23344444444331111134556666666666666654 4544443 23345566
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.+...... .........++.+.+.++|+++.... ....++|+++ +...++++++++++.|+++++++.
T Consensus 358 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 358 MELVCDRQS------REPARAETAKLIYRAYQLGLVVYYVG--MNGNVLEFTP-PLTITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp EEEEEETTT------TEECHHHHHHHHHHHHHHTEECEEES--TTSCEEEECC-CTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred EEEecCccc------cCCCHHHHHHHHHHHHHCCcEEeecC--CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 655321100 00013345567778888897543332 1246899987 457788899999999999988763
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=179.28 Aligned_cols=358 Identities=9% Similarity=0.021 Sum_probs=212.4
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcC-CCccccccChhhHHHHHHHHHHHHHHcCCC--C
Q 038818 54 ETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFN-VVGFNWMSSPAATELENIVMDWLGEMLKLP--K 130 (486)
Q Consensus 54 ~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~~--~ 130 (486)
..+.+.+...-.+...+.....|+++...++..+. +.+.+..... .....|....+..++.+.+.+|+.+..|.+ +
T Consensus 16 ~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~-v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~ 94 (401)
T 7aat_A 16 LGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNC-VRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKS 94 (401)
T ss_dssp HHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHH-HHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT
T ss_pred HHHHHHHhhCCCCCceeeeeeeEECCCCCEechHH-HHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCcccccc
Confidence 34444444432233333333344444433333333 3333333332 233455555566788888888887766642 3
Q ss_pred CCccCCCcceEE--cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCC
Q 038818 131 SFLFSGTGGGVI--QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSS 208 (486)
Q Consensus 131 ~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~ 208 (486)
+ +.++ |+|||+|+..++.+.+... .+++.|+++..+|.++...++..|. +++.+|++..+
T Consensus 95 ~-------~i~~v~t~G~~~al~~~~~~l~~~~--------~~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~~~~~~~~ 156 (401)
T 7aat_A 95 G-------RYVTVQGISGTGSLRVGANFLQRFF--------KFSRDVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPK 156 (401)
T ss_dssp T-------CEEEEEEEHHHHHHHHHHHHHHHHC--------TTCCEEEEEESCCTTHHHHHHHTTC---EEEEEECEETT
T ss_pred C-------ceEEEecCcchHHHHHHHHHHHHhc--------cCCCEEEEcCCCchhHHHHHHHcCC---eeEeeeeeccc
Confidence 2 5666 9999999988876654321 1567788888999999999999999 99999986434
Q ss_pred CcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHHHHhCceEEeeccccchhccCcc-----ch
Q 038818 209 SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPE-----FR 280 (486)
Q Consensus 209 ~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~-----~~ 280 (486)
++.+|++.+++.+++ . ...+.+|+++.++|+||.+ +++++|+++|++||+++++|.+|..+...... ..
T Consensus 157 ~~~~d~~~l~~~l~~-~--~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~ 233 (401)
T 7aat_A 157 TCSLDFTGAMEDISK-I--PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALR 233 (401)
T ss_dssp TTEECHHHHHHHHTT-S--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred cCccCHHHHHHHHHh-C--CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHH
Confidence 679999999988875 2 1235678889999999966 55889999999999999999999765432110 11
Q ss_pred hhhcCCCCCCceeeccccccCCC-CcceEEEe--eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHH
Q 038818 281 HFIDGIEGADSFSLNAHKWFFTT-LDCCCLWV--KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKL 357 (486)
Q Consensus 281 ~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~--~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~ 357 (486)
.. .....-..++.+++|.++.| ..+|++++ .++............+.... .. ...+...
T Consensus 234 ~~-~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~ 295 (401)
T 7aat_A 234 HF-IEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPM--------------YS---NPPMNGA 295 (401)
T ss_dssp HH-HHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH--------------HS---SCCHHHH
T ss_pred HH-HhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc--------------cC---CCChHHH
Confidence 11 11123446778899999744 34788776 23332111100000000000 00 0112222
Q ss_pred HHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 358 WLVLRSFG--------VANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 358 ~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
..+...+. .+.++++.++..++++++.+.|+++. ++++. +|..+.+.|.-.+ .
T Consensus 296 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~- 359 (401)
T 7aat_A 296 RIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHI-TDQIGMFCFTGLK--------------P- 359 (401)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHCCSSEEECCCC--------------H-
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcee-cCCcceEEecCCC--------------H-
Confidence 22222221 34466777888889999999998762 34433 3344555542111 1
Q ss_pred HHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+.+...+.+.|+. +.+ .+|++++. .+++ +|+++++.|++++
T Consensus 360 --~~~~~ll~~~gi~-v~~-------~~Ris~~~-~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 360 --EQVERLTKEFSIY-MTK-------DGRISVAG-VASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp --HHHHHHHHHHCEE-CCT-------TCEEEGGG-CCTT-THHHHHHHHHHHH
T ss_pred --HHHHHHHHhCCEe-ccC-------CCeEEecc-CChh-hHHHHHHHHHHHh
Confidence 1222223455764 332 27999853 4444 6999999998875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=182.02 Aligned_cols=355 Identities=10% Similarity=-0.009 Sum_probs=213.1
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHh-hcCCC-ccccccChhhHHHHHHHHHHHHHHcCC--
Q 038818 53 IETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSS-GFNVV-GFNWMSSPAATELENIVMDWLGEMLKL-- 128 (486)
Q Consensus 53 ~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~-~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~-- 128 (486)
...+.+.+.+.-.+.........|+++..... ++..+.+.+.. .+... ...|...+...++++.+.+|+.+..|.
T Consensus 16 ~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~ 94 (412)
T 1yaa_A 16 LFGIKQRYGQDQRATKVDLGIGAYRDDNGKPW-VLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDAL 94 (412)
T ss_dssp THHHHHHHHTCCCSSCEECSSCCCBCTTSCBC-CCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCC-CcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCC
Confidence 44566655543112233333434433332222 23345555555 55422 234544555778888888888665553
Q ss_pred CCCCccCCCcceEE--cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEec-C
Q 038818 129 PKSFLFSGTGGGVI--QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKT-T 205 (486)
Q Consensus 129 ~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~-d 205 (486)
+++ ..++ |+||++|+..++...+.. . +++.|+++..+|.++...++..|. +++.+|. +
T Consensus 95 ~~~-------~i~~~~t~g~~~a~~~~~~~~~~~--~-------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~ 155 (412)
T 1yaa_A 95 QED-------RVISVQSLSGTGALHISAKFFSKF--F-------PDKLVYLSKPTWANHMAIFENQGL---KTATYPYWA 155 (412)
T ss_dssp HTT-------CEEEEEEEHHHHHHHHHHHHHHHH--C-------TTCCEEEEESCCTTHHHHHHTTTC---CEEEEECEE
T ss_pred Ccc-------eEEEEeccchHhHHHHHHHHHHHh--C-------CCCEEEEeCCCCccHHHHHHHcCc---eEEEEeeec
Confidence 222 6788 999999998775443321 0 455677888899999999999999 9999998 5
Q ss_pred CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchhccC---c--
Q 038818 206 KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACIC---P-- 277 (486)
Q Consensus 206 ~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~---~-- 277 (486)
+ +++.+|+++|++++++.. ....+++.+.++|++|.+-| +++|+++|++||+++++|++|+++.... +
T Consensus 156 ~-~~~~~d~~~l~~~l~~~~---~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 231 (412)
T 1yaa_A 156 N-ETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAY 231 (412)
T ss_dssp T-TTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTH
T ss_pred C-CCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhH
Confidence 3 256899999999997531 11345566999999999854 6788999999999999999996543321 1
Q ss_pred cchhhhcCCCC---CCceeeccccccCC-CCcceEEE--e----eCch----HHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 278 EFRHFIDGIEG---ADSFSLNAHKWFFT-TLDCCCLW--V----KNPN----ALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 278 ~~~~~~~~~~~---aDsi~~~~hK~l~~-p~~~g~~~--~----~~~~----~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
..... ..... -+.+..+++|.++. ...+|+++ . +++. ... .+.. ....
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~-~l~~---~~~~------------- 293 (412)
T 1yaa_A 232 AVRLG-VEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTS-QLAK---IIRS------------- 293 (412)
T ss_dssp HHHHH-HHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHH-HHHH---HHHT-------------
T ss_pred HHHHH-HhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHH-HHHH---HHhh-------------
Confidence 11111 11111 23567788999874 23468877 4 2443 222 1110 0000
Q ss_pred ccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCeeEEEEEeecCC
Q 038818 344 WQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNFAVVCFRVLPSA 412 (486)
Q Consensus 344 ~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~ 412 (486)
+.. ....+..+++.+.+. .++++++.++..++++++.+.|++++ ++++. ++..+++.|. ...
T Consensus 294 -~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~--~~~ 366 (412)
T 1yaa_A 294 -EVS---NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI-VNQCGMFSFT--GLT 366 (412)
T ss_dssp -TTS---SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH-HHCCSSEEEC--CCC
T ss_pred -ccC---CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee-ccCceEEEee--CCC
Confidence 000 012233333333331 24677788888899999999998764 36654 3344454442 110
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 413 SGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
. ..+...+.+.|+. +.+ ++|+++.. .+++++++++++|+++++.
T Consensus 367 ------------~---~~~~~~l~~~gi~-v~~-------~~Ris~~~--~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 367 ------------P---QMVKRLEETHAVY-LVA-------SGRASIAG--LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp ------------H---HHHHHHHHHHCEE-CCT-------TSEEEGGG--CCTTTHHHHHHHHHHHHHH
T ss_pred ------------H---HHHHHHHHhCCEE-ecc-------CcEEEEcc--CCHhHHHHHHHHHHHHHHh
Confidence 1 2343334456764 333 47999853 4677999999999998764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-19 Score=178.08 Aligned_cols=317 Identities=10% Similarity=-0.020 Sum_probs=192.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH--HHHHHHHHHHHHHc---cccCCCCeEEEec
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL--CTLAAARDQILNEI---GRENISRLVVYGS 178 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~--~al~~a~~~~~~~~---~~~~~~~~~v~~s 178 (486)
.|.......++++ .++++++++++ ..++|+|+++++. .++.+..... .. .+...+++.|+++
T Consensus 73 ~Y~~~~g~~~lr~----~ia~~~~~~~~-------~i~~t~G~~~al~~~~~~~~l~~~~--~g~~~~~~~~~gd~V~v~ 139 (427)
T 3ppl_A 73 NYGGLDGIVDIRQ----IWADLLGVPVE-------QVLAGDASSLNIMFDVISWSYIFGN--NDSVQPWSKEETVKWICP 139 (427)
T ss_dssp SSCCSSCCHHHHH----HHHHHHTSCGG-------GEEECSSCHHHHHHHHHHHHHHHCC--TTCSSCGGGSSCCEEEEE
T ss_pred CCCCCCCcHHHHH----HHHHHhCCCcc-------eEEEeCCcHHHHHHHHHHHHHhccC--CcccccccCCCCCEEEEc
Confidence 3433334455554 45555577655 7899999999884 4444443300 00 0000016778889
Q ss_pred CCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEee-cCCccccccCCch---HHHH
Q 038818 179 DQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCAT-VGTTAITTVDPLG---PLCD 254 (486)
Q Consensus 179 ~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~-~gtt~~G~idpl~---~I~~ 254 (486)
..+|.++...++..|. +++.+|+++ + .+|+++|+++++.. .+.+|+++ .++|++|.+-|.+ +|++
T Consensus 140 ~p~y~~~~~~~~~~g~---~~~~v~~~~--~-g~d~~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~ 208 (427)
T 3ppl_A 140 VPGYDRHFSITERFGF---EMISVPMNE--D-GPDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSA 208 (427)
T ss_dssp ESCCHHHHHHHHHTTC---EEEEEEEET--T-EECHHHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHcCC---EEEEeCCCC--C-CCCHHHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHH
Confidence 9999999999999999 999999985 3 39999999988421 23456555 7899999998877 8888
Q ss_pred HH-HHhCceEEeeccccchhccCcc-----chhhh--cCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcc
Q 038818 255 IA-KRYSIWVHVDAAYAGSACICPE-----FRHFI--DGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 255 i~-~~~g~~lhvD~a~g~~~~~~~~-----~~~~~--~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+| ++||+++|+|++|+...+.... ..... .+....+.+..+++|+++.+.++|+++.++ .... .+.....
T Consensus 209 ~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~-~l~~-~~~~~~~ 286 (427)
T 3ppl_A 209 METAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA-ENRK-WYTGHAG 286 (427)
T ss_dssp CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH-HHHH-HHHHHHH
T ss_pred HHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH-HHHH-HHHHHhh
Confidence 88 9999999999999764322111 11100 012345677889999976667788777653 3322 1110000
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHH----hCCCCeEEec
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-----ANLRNFLRSHVRMAQLFQELV----GGDNRFEIVA 397 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~L----~~~~~~~~~~ 397 (486)
+. +.....+..+++...+.. +.+++..+...+..+.+.+.| ..++++++..
T Consensus 287 ~~--------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 346 (427)
T 3ppl_A 287 IR--------------------GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTV 346 (427)
T ss_dssp HH--------------------CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECC
T ss_pred cc--------------------cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeC
Confidence 00 001123333444444332 223444444444555555554 4344577654
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-E-----CCEeEEEEEecCCCCcHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-V-----AGIYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~-----~~~~~lR~~~~~~~tt~~did~~ 471 (486)
+.....+.+.+... + ..++.+.+.++|+.+.++.. + .+.+++|+++.. .++++|+++
T Consensus 347 p~~g~~~~~~~~~~-------------~--~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~--~~~~~i~~~ 409 (427)
T 3ppl_A 347 PAGGYFISLDVVPG-------------T--ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSL--PPVEELEVA 409 (427)
T ss_dssp CSBSSCEEEECSTT-------------C--HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS--SCHHHHHHH
T ss_pred CCccEEEEEECCcc-------------h--HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCC--CCHHHHHHH
Confidence 44445555665431 1 24566677778875433121 1 246789999943 378899999
Q ss_pred HHHHHHHHHHHh
Q 038818 472 WKVVQEKLDGIL 483 (486)
Q Consensus 472 i~~l~~~~~~l~ 483 (486)
++.|.++++++.
T Consensus 410 ~~~l~~~l~~~~ 421 (427)
T 3ppl_A 410 MDGVATCVLLAA 421 (427)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-19 Score=178.62 Aligned_cols=304 Identities=13% Similarity=0.035 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+++++++|.+ .+++|+|||+|+..++.+++...... +..+ ++.+|+.+...|.+...+....
T Consensus 81 ~~~~~l~~~la~~~~~~---------~v~~~~gg~~a~~~al~~~~~~~~~~-~~~g-~~~vi~~~~~y~~~~~~~~~~~ 149 (406)
T 4adb_A 81 EPVLRLAKKLIDATFAD---------RVFFCNSGAEANEAALKLARKFAHDR-YGSH-KSGIVAFKNAFHGRTLFTVSAG 149 (406)
T ss_dssp HHHHHHHHHHHHHSSCS---------EEEEESSHHHHHHHHHHHHHHHHHHH-TCTT-CCEEEEETTCCCCSSHHHHHHS
T ss_pred HHHHHHHHHHHhhCCCC---------eEEEeCcHHHHHHHHHHHHHHHHHhc-CCCC-CcEEEEECCCcCCCcHHHhhcc
Confidence 44566778899998754 57999999999999998876532211 1010 2445555555565555555554
Q ss_pred CCCC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-----CCchHHHHHHHH
Q 038818 193 GIDP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV-----DPLGPLCDIAKR 258 (486)
Q Consensus 193 G~g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i-----dpl~~I~~i~~~ 258 (486)
+... ..+..+|. .|+++|++++++. +.+|+++ +.+++|.+ +++++|.++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~ 215 (406)
T 4adb_A 150 GQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDS------TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNR 215 (406)
T ss_dssp SCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTT------EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHH
T ss_pred CCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCC------eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHH
Confidence 4210 13444443 3899999988632 4567777 78888854 579999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
||+++|+|++|+++......+.....++ ..|.+++ +|++++...+|+++.+++ ... .+.. ....
T Consensus 216 ~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~r~G~~~~~~~-~~~-~~~~---~~~~-------- 279 (406)
T 4adb_A 216 HNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLLTT--AKALGGGFPVGALLATEE-CAR-VMTV---GTHG-------- 279 (406)
T ss_dssp TTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECHH-HHH-TCCT---TSSC--------
T ss_pred cCCEEEEeccccCCCccchhHHHHhcCC-CCCEEEe--chhhcCCCCeEEEEEcHH-HHh-hhcc---CCcC--------
Confidence 9999999999975422211111111122 4677765 999996566888776543 322 2211 0000
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEeecCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRVLPSASG 414 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~~~ 414 (486)
.+.....+.+.+++..+..-..++..++..++++++.+.|+++ +.+.-. .....++.+.+....
T Consensus 280 ---------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-- 347 (406)
T 4adb_A 280 ---------TTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEV-RGLGLLIGCVLNADY-- 347 (406)
T ss_dssp ---------CSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECTTT--
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEEEEEEEEEEeCCc--
Confidence 0001223333333333211111566777788888888888764 111111 112345666665321
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.....++.+.+.++|+.+. + .+..++|+++ +..+++++++++++.|+++++++.+
T Consensus 348 ----------~~~~~~~~~~l~~~gi~v~-~---~~~~~iRi~~-~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 348 ----------AGQAKQISQEAAKAGVMVL-I---AGGNVVRFAP-ALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp ----------TTCHHHHHHHHHHTTEECE-E---SSTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHHHCCcEEe-e---cCCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0013466777777887533 2 2356899987 4677889999999999999987764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-19 Score=176.92 Aligned_cols=210 Identities=13% Similarity=0.088 Sum_probs=144.0
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH----HHHc
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA----AQIA 192 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a----~~~~ 192 (486)
++++.+++++|.+. .+++++|++|+..++. ... +++.|+++...|.+.... ++..
T Consensus 71 ~l~~~la~~~g~~~---------~i~~~sG~~ai~~~~~-l~~-----------~gd~Vl~~~~~y~~~~~~~~~~~~~~ 129 (403)
T 3cog_A 71 CLEKAVAALDGAKY---------CLAFASGLAATVTITH-LLK-----------AGDQIICMDDVYGGTNRYFRQVASEF 129 (403)
T ss_dssp HHHHHHHHHHTCSE---------EEEESCHHHHHHHHHT-TSC-----------TTCEEEEESSCCHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHhCCCc---------EEEECCHHHHHHHHHH-HhC-----------CCCEEEEeCCCcchHHHHHHHHHHHc
Confidence 34455677777652 3556666788876665 321 566788888999875543 3567
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC-ceEEeeccccc
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS-IWVHVDAAYAG 271 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g-~~lhvD~a~g~ 271 (486)
|+ +++.+|.+ |+++|+++|+++ +.+|+++.++|++|.+.|+++|+++|+++| +++++|++|+.
T Consensus 130 G~---~v~~v~~~-------d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~ 193 (403)
T 3cog_A 130 GL---KISFVDCS-------KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMS 193 (403)
T ss_dssp TC---EEEEECTT-------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTC
T ss_pred CC---EEEEECCC-------CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcc
Confidence 88 88888763 889999888653 457888999999999999999999999999 99999999987
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+....+ . . .++|.++.++||++++|.+ +|+++.+++............ . +
T Consensus 194 ~~~~~~-~----~--~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~-~--------------------g 245 (403)
T 3cog_A 194 PYFQRP-L----A--LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS-L--------------------G 245 (403)
T ss_dssp TTTCCT-T----T--TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHH-H--------------------C
T ss_pred cccCCc-c----c--cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHh-c--------------------C
Confidence 653222 1 1 2689999999999998876 588888765543321110000 0 0
Q ss_pred CCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 038818 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRF 393 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 393 (486)
-....+..|+.++.+ +.+..+.++..+++..+.+.|++.+.+
T Consensus 246 ~~~~~~~~~~~~~~l--~~l~~r~~~~~~n~~~l~~~l~~~~~v 287 (403)
T 3cog_A 246 AVPSPIDCYLCNRGL--KTLHVRMEKHFKNGMAVAQFLESNPWV 287 (403)
T ss_dssp CCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred CCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 012345556665544 345556677777777777777766443
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-19 Score=179.02 Aligned_cols=303 Identities=12% Similarity=0.049 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+++++++|. + .+++++|||+|+..++.+++...... +..+ ++.+|+.+...|.+...++..
T Consensus 98 ~~~~~~l~~~la~~~g~--~-------~v~~~~ggteA~~~al~~~~~~~~~~-~~~g-~~~vi~~~~~yh~~~~~~~~~ 166 (420)
T 2pb2_A 98 NEPALRLGRKLIDATFA--E-------RVLFMNSGTEANETAFKLARHYACVR-HSPF-KTKIIAFHNAFHGRSLFTVSV 166 (420)
T ss_dssp CHHHHHHHHHHHHHSSC--S-------EEEEESSHHHHHHHHHHHHHHHHHHH-TCTT-CCEEEEETTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHhhCCC--C-------eEEEeCCHHHHHHHHHHHHHHHhhhc-cCCC-CCEEEEEeCCcCCcCHHHHHh
Confidence 35566777888888873 2 58999999999999999887642211 1111 124444555566666666666
Q ss_pred cCCC---------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc----cCCchHHHHHHHH
Q 038818 192 AGID---------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT----VDPLGPLCDIAKR 258 (486)
Q Consensus 192 ~G~g---------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~----idpl~~I~~i~~~ 258 (486)
.|.. ...+..+|. .|+++|+++|++. +.+|+++.+++++|. .+++++|+++|++
T Consensus 167 ~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~------~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~ 233 (420)
T 2pb2_A 167 GGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE 233 (420)
T ss_dssp SSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred cCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccC------ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHH
Confidence 5541 012555553 2899999988642 456777777666665 3789999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
||+++++|++|.++......+.....++ ..|.+++ +|+++++.++|+++++++ .. +.+.. ... .
T Consensus 234 ~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~diit~--sK~l~~G~~iG~~~~~~~-l~-~~l~~--~~~-~-------- 297 (420)
T 2pb2_A 234 HQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDILTS--AKALGGGFPVSAMLTTQE-IA-SAFHV--GSH-G-------- 297 (420)
T ss_dssp TTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECHH-HH-TTCC-------C--------
T ss_pred cCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCeEEe--cccccCCCceEEEEEhHH-HH-HhhcC--CCc-C--------
Confidence 9999999999965322111111111122 4677754 799997778999988754 22 22211 000 0
Q ss_pred cCCCCccccCCCCCCchH---HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEeecC
Q 038818 339 VDYKDWQITLSRRFRALK---LWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRVLPS 411 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~ 411 (486)
.+. ....+. +..+++.+.. +++.++..++++++.+.|+++ |.+..+ ++...++.+.+...
T Consensus 298 -----~t~----~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~ 364 (420)
T 2pb2_A 298 -----STY----GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPK 364 (420)
T ss_dssp -----CEE----CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGG
T ss_pred -----ccc----CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCC
Confidence 011 112333 3334444433 356677788888888888664 433322 23345666766431
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 412 ASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
. .....++.+.+.++|+++. +. +..++|+++ ...++++|++++++.|+++++++.+
T Consensus 365 ~------------~~~~~~l~~~l~~~Gi~v~-~~---~~~~iRl~~-~~~~t~eei~~~~~~l~~~l~~~~~ 420 (420)
T 2pb2_A 365 Y------------KGRARDFLYAGAEAGVMVL-NA---GADVMRFAP-SLVVEEADIHEGMQRFAQAVGKVVA 420 (420)
T ss_dssp G------------TTCHHHHHHHHHHTTEECE-ES---STTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred c------------hHHHHHHHHHHHHCCCEEE-eC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 0 0013456777777887433 32 246899997 3577889999999999999887753
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=176.55 Aligned_cols=319 Identities=11% Similarity=0.010 Sum_probs=191.0
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH-HHHHHHHHHHHH-HccccC--C-CCeEEEec
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL-CTLAAARDQILN-EIGREN--I-SRLVVYGS 178 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~-~al~~a~~~~~~-~~~~~~--~-~~~~v~~s 178 (486)
.|....+..++++.+ ++.+|.+++ ..++|+|++++++ ..+..+... + ..|... . .+..|++.
T Consensus 71 ~Y~~~~G~~~lr~~i----a~~~~~~~~-------~i~~t~G~~~al~l~~~~~~l~~--~~~~g~~~~~~~d~~~Vl~~ 137 (422)
T 3d6k_A 71 NYGGLLGIADIRELW----AEALGLPAD-------LVVAQDGSSLNIMFDLISWSYTW--GNNDSSRPWSAEEKVKWLCP 137 (422)
T ss_dssp SSCCSSCCHHHHHHH----HHHHTCCGG-------GEEECSSCHHHHHHHHHHHHHHH--CCTTCSSCGGGSSCCEEEEE
T ss_pred CCCCCCCCHHHHHHH----HHHhCCChh-------HEEEecchHHHHHHHHHHHHhcC--cccccccccccCCCCEEEEe
Confidence 454444455565554 455577655 7899999998873 332222211 0 000000 0 12367788
Q ss_pred CCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEE-eecCCccccccCCch---HHHH
Q 038818 179 DQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLC-ATVGTTAITTVDPLG---PLCD 254 (486)
Q Consensus 179 ~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv-~~~gtt~~G~idpl~---~I~~ 254 (486)
..+|..+..+++..|. +++.+|+++ + .+|+++|++++++. .+.+|+ .+.++|+||.+-|.+ +|++
T Consensus 138 ~p~y~~~~~~~~~~g~---~~~~v~~~~--~-g~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 206 (422)
T 3d6k_A 138 VPGYDRHFTITEHFGF---EMINVPMTD--E-GPDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAE 206 (422)
T ss_dssp ESCCHHHHHHHHHHTC---EEEEEEEET--T-EECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHcCC---EEEecCCCC--C-CCCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHH
Confidence 8999999999999999 999999975 3 39999999988641 134555 678999999998876 7888
Q ss_pred HHH-HhCceEEeeccccc-hhccCc-cchhhh-----cCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcc
Q 038818 255 IAK-RYSIWVHVDAAYAG-SACICP-EFRHFI-----DGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 255 i~~-~~g~~lhvD~a~g~-~~~~~~-~~~~~~-----~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+|+ +||+++++|++|+. .+.... ...... .+....+.+..+++|++.....+|+++.++ +... .+.....
T Consensus 207 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~-~l~~-~l~~~~~ 284 (422)
T 3d6k_A 207 MSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK-ENIE-WYASHAN 284 (422)
T ss_dssp CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH-HHHH-HHHHHHH
T ss_pred HHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH-HHHH-HHHHHHH
Confidence 888 99999999999973 221111 111110 112234577788999954445689888763 3322 2211000
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHh----CCCCeEEec
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-----ANLRNFLRSHVRMAQLFQELVG----GDNRFEIVA 397 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~L~----~~~~~~~~~ 397 (486)
... .....+...++...+.. +.++++.+...+..+++.+.|. +++++++..
T Consensus 285 ~~~--------------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 344 (422)
T 3d6k_A 285 VRG--------------------IGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTS 344 (422)
T ss_dssp HHC--------------------SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECC
T ss_pred hhc--------------------CCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeC
Confidence 000 01123444444444433 2344444444555555555554 344467654
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-E-----CCEeEEEEEecCCCCcHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-V-----AGIYFIRFAVGATLTEDRHVIAA 471 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~-----~~~~~lR~~~~~~~tt~~did~~ 471 (486)
+.....+.+.+... + ...+.+.+.++|+.+..... + .+..++|+++.. +++++++++
T Consensus 345 p~~g~~~~~~~~~~-------------~--~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~--~~~e~i~~~ 407 (422)
T 3d6k_A 345 PTGGYFISVDVVPG-------------T--ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL--PPVAELEVA 407 (422)
T ss_dssp CSBSSCEEEEESTT-------------C--HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS--SCHHHHHHH
T ss_pred CCcceEEEEECCCC-------------C--HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC--CCHHHHHHH
Confidence 44445556666421 0 23456667777875433122 2 135789999853 788899999
Q ss_pred HHHHHHHHHHHhhc
Q 038818 472 WKVVQEKLDGILAT 485 (486)
Q Consensus 472 i~~l~~~~~~l~~~ 485 (486)
++.|+++++++.++
T Consensus 408 ~~~l~~~l~~~~~~ 421 (422)
T 3d6k_A 408 MDGFATCVLMAALE 421 (422)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877653
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=177.36 Aligned_cols=299 Identities=12% Similarity=0.028 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC---CchHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ---THSALQKA 188 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~---~H~s~~~a 188 (486)
..+++++.+++++++|.++. ...++++|||+|+..++.+. +++.|+++.. .|+++...
T Consensus 57 ~~~~~~~~~~~a~~~g~~~~------~~~~~~~ggt~a~~~~~~~~-------------~gd~Vl~~~~~y~~~~~~~~~ 117 (374)
T 2aeu_A 57 SYFAEKVNEYGLKHLGGDEN------DKCVGFNRTSSAILATILAL-------------KPKKVIHYLPELPGHPSIERS 117 (374)
T ss_dssp HHHHHHHHHHHHHHHTCCTT------EEEEEESSHHHHHHHHHHHH-------------CCSEEEEECSSSSCCTHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCc------ceEEEEcChHHHHHHHHHhC-------------CCCEEEEecCCCCccHHHHHH
Confidence 35667788888999998421 15799999999998887754 2344566666 46666667
Q ss_pred HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEE-EEeecCCcccc-ccCCchHHHHHHHHhCceEEee
Q 038818 189 AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLF-LCATVGTTAIT-TVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 189 ~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~-vv~~~gtt~~G-~idpl~~I~~i~~~~g~~lhvD 266 (486)
++..|+ +++.+ +|+++|+++ ++ .+.+ |+++.++|++| ...|+++|.++|++||+++|+|
T Consensus 118 ~~~~g~---~~~~v---------~d~~~l~~~-~~------~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~D 178 (374)
T 2aeu_A 118 CKIVNA---KYFES---------DKVGEILNK-ID------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVD 178 (374)
T ss_dssp HHHTTC---EEEEE---------SCHHHHHTT-CC------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHcCc---EEEEe---------CCHHHHHhc-CC------CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEE
Confidence 888888 88777 278888876 32 2457 78888999999 8999999999999999999999
Q ss_pred ccccchhccCccchh-hhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcc
Q 038818 267 AAYAGSACICPEFRH-FIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQ 345 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~-~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (486)
++|+.+.. .+.... ... .+.|.++.++||++++| ++|+++.+++ .... +.....+.
T Consensus 179 e~~~~~~~-~~~~~~~~~~--~~~di~~~S~sK~l~g~-~~G~~~~~~~-~~~~-l~~~~~~~----------------- 235 (374)
T 2aeu_A 179 DASGARVR-LLFNQPPALK--LGADLVVTSTDKLMEGP-RGGLLAGKKE-LVDK-IYIEGTKF----------------- 235 (374)
T ss_dssp CTTHHHHH-HHTTCCCHHH--HTCSEEEEETTSSSSSC-SCEEEEEEHH-HHHH-HHHHHHTT-----------------
T ss_pred CCcccccc-cccccCCccc--cCCcEEEecCcccccCc-ceEEEEECHH-HHHH-HHHhhccc-----------------
Confidence 99976541 011000 111 15789999999998765 7888777653 3222 11100000
Q ss_pred ccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHH----HHHHHHHHhCC---CCeEEecCCCeeEEEEEeecCCCCC
Q 038818 346 ITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRM----AQLFQELVGGD---NRFEIVAPRNFAVVCFRVLPSASGL 415 (486)
Q Consensus 346 ~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~----a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~~~~~~~ 415 (486)
+.....+.++ .++..+..+.+++..++...+ .+.+.+.|..+ +++.+...+. +.+.+......
T Consensus 236 ---~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~-g~~~~~~~~~~--- 308 (374)
T 2aeu_A 236 ---GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT-GFVIKRVYKDD--- 308 (374)
T ss_dssp ---TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS-EEEEEEEESSH---
T ss_pred ---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCc-eEEEEeecccc---
Confidence 0011222333 333333222334444444444 45566666654 3566544444 33333322110
Q ss_pred CCCCCccchHHHHHHHHH-HHHhcCcEEEeeeeE-CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 416 GDGKANEGANELNRKLLE-SINASGQLYVSHGMV-AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~-~l~~~g~~~~~~~~~-~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
...... ..++.. .+.+.|+++.++..+ .+..++|++++....++.+++++.++|+++++++.+
T Consensus 309 -----~~~~~~-~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 309 -----TINIKK-LIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp -----HHHHHH-HHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred -----cccccc-hHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 000000 112333 334568754433222 235689999976566666799999999999988865
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-18 Score=171.20 Aligned_cols=309 Identities=11% Similarity=-0.032 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC-CCchHHHHHHHHcC
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD-QTHSALQKAAQIAG 193 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a~~~~G 193 (486)
..++.+.++++++.+.+ .+++|+|||+|+..++.+++... +.. |.++..|++.. ..|.+...++...|
T Consensus 88 ~~~l~~~la~~~~~~~~-------~v~~~~ggtea~~~ai~~~~~~~-~~~---g~~~~~vi~~~~~yh~~~~~~~~~~~ 156 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLE-------CVFLADSGSVAVEVAMKMALQYW-QAK---GEARQRFLTFRNGYHGDTFGAMSVCD 156 (429)
T ss_dssp HHHHHHHHHHHSCTTCC-------EEEEESSHHHHHHHHHHHHHHHH-HHH---TCCCCEEEEETTCCCCSSHHHHTTSC
T ss_pred HHHHHHHHHHhCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHh-ccc---CCCCCeEEEECCCCCCCchhhhhhcC
Confidence 34566778898886554 78999999999999988776422 100 11244455554 45655444443333
Q ss_pred CC----------CCCeEEEecCCC----CCcccCHHHHHHHHHHHHHCCCccEEEEeecC-CccccccCC----chHHHH
Q 038818 194 ID----------PKNFRAIKTTKS----SSFTLTPESLQAAIDLDIQAGLIPLFLCATVG-TTAITTVDP----LGPLCD 254 (486)
Q Consensus 194 ~g----------~~~v~~v~~d~~----~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~G~idp----l~~I~~ 254 (486)
.. ...+..++++.. ..+.+|+++|+++|++.. ..+.+|+++.. ++++|.+.| +++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~ 233 (429)
T 1s0a_A 157 PDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRK 233 (429)
T ss_dssp TTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCTHHHHHHHH
T ss_pred CchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC---CCEEEEEEeecccCCCCcccCCHHHHHHHHH
Confidence 10 114566766421 123689999999997531 12446666666 688998776 999999
Q ss_pred HHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCc--ccccCc
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNP--EFLRNK 331 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~--~y~~~~ 331 (486)
+|++||+++|+|++|.++......+.....++ ..|.++++ |+++++ .++|+++.+++ ... .+.... .+..
T Consensus 234 l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~G~~~iG~~~~~~~-~~~-~l~~~~~~~~~~-- 306 (429)
T 1s0a_A 234 ICDREGILLIADEIATGFGRTGKLFACEHAEI-APDILCLG--KALTGGTMTLSATLTTRE-VAE-TISNGEAGCFMH-- 306 (429)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTSSSCCEEEEECHH-HHH-HHHTSTTSSCSC--
T ss_pred HHHHcCCEEEEeehhhCCcccchHHHhhhcCC-CCCEEEec--ccccCCCccceEEEeCHH-HHH-HhhcCCCccccc--
Confidence 99999999999999975421111111111122 46777654 988877 78999887653 332 222110 0000
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCCeeEEE
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRNFAVVC 405 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~ 405 (486)
..+-....+.+.+ +++.+..+ +..++..++++++.+.|+++ |++..+ ++..+++.
T Consensus 307 ---------------~~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~ 367 (429)
T 1s0a_A 307 ---------------GPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGV 367 (429)
T ss_dssp ---------------CCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEE
T ss_pred ---------------CCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEE
Confidence 0011122333333 33333222 45677778899999998775 555533 22334566
Q ss_pred EEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 406 FRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 406 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.+.... + ...+.+.|.++|++ +.+. + .++|+++ +..++++|++++++.|+++++++.
T Consensus 368 ~~~~~~~------------~--~~~l~~~l~~~Gi~-v~~~---~-~~iRis~-~~~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 368 VETTHPV------------N--MAALQKFFVEQGVW-IRPF---G-KLIYLMP-PYIILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp EEESSCB------------C--HHHHHHHHHHTTEE-CCCB---T-TEEEECC-CTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred EEECCcc------------c--HHHHHHHHHHCCCE-Eecc---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHhhh
Confidence 6654210 1 23566677777864 3332 2 5899997 457788899999999999876554
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=180.76 Aligned_cols=306 Identities=13% Similarity=0.025 Sum_probs=182.9
Q ss_pred ccccChhhHHHHHHHHHHHHHHcC-CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 104 NWMSSPAATELENIVMDWLGEMLK-LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
.|...+...++++.+.+++. .| .+++ ..++|+|+++++..++. ... +++.|++...+|
T Consensus 70 ~y~~~~g~~~lr~~la~~l~--~g~~~~~-------~v~~~~G~~~al~~~~~-~~~-----------~gd~Vl~~~p~y 128 (400)
T 3asa_A 70 GYGPDFGLPALRQKLSEDFY--RGFVDAK-------EIFISDGAKVDLFRLLS-FFG-----------PNQTVAIQDPSY 128 (400)
T ss_dssp CCCCTTCCHHHHHHHHHTTS--TTSSCGG-------GEEEESCHHHHHHHHHH-HHC-----------SSCEEEEEESCC
T ss_pred CCCCCCCCHHHHHHHHHHHH--cCCCCHH-------HEEEccChHHHHHHHHH-HcC-----------CCCEEEECCCCc
Confidence 34333445566655544432 46 4443 68999999988765332 211 556788888999
Q ss_pred hHHHHHHHHcCCCCCC-eEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHH
Q 038818 183 SALQKAAQIAGIDPKN-FRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKR 258 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~-v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~ 258 (486)
.++..+++..|. + ++.+|+++++.+..|++ +. ..+.+|+++.++|++|.+-| +++|+++|++
T Consensus 129 ~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l~---~~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 194 (400)
T 3asa_A 129 PAYLDIARLTGA---KEIIALPCLQENAFFPEFP---ED--------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIE 194 (400)
T ss_dssp HHHHHHHHHTTC---SEEEEEECCGGGTTCCCCC---TT--------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---cceEecccchhcCcccChh---hc--------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999998 8 99999875333344432 11 12446777789999999977 6678899999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCC---CCCceeeccccccC-CCCcceEEEeeCchH------HHHHhcCCcccc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIE---GADSFSLNAHKWFF-TTLDCCCLWVKNPNA------LIKALSTNPEFL 328 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~---~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~------~~~~~~~~~~y~ 328 (486)
+|+++++|++|+.+... +.....+..+. ..+.+..+++|+++ ....+|+++++++.. +...........
T Consensus 195 ~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (400)
T 3asa_A 195 HEILILFDAAYSTFISD-PSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTT 273 (400)
T ss_dssp TTCEEEEECTTGGGCCC-TTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHH
T ss_pred cCCEEEEEchhhhhhcC-CCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccC
Confidence 99999999999864321 11111111222 23466889999997 334589888765431 111110000000
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEE-
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFR- 407 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~- 407 (486)
. . ....+...++...+....++++.++..++++++.+.|++. ++++..+...+.+.+.
T Consensus 274 ~------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 332 (400)
T 3asa_A 274 F------------------N--GASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKP 332 (400)
T ss_dssp C------------------C--CCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEEC
T ss_pred c------------------c--CCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEec
Confidence 0 0 0122333333333321246677788888999999999887 7887754445566666
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.... . ..++.+.+.+ .|+.+..+..+. +..++|+++ .+++++++++++.|++++++..
T Consensus 333 ~~~~~----------~----~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~---~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 333 TQANI----------S----DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSS---LGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp CCTTC----------C----TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEEC---CSCHHHHHHHHHHHHC------
T ss_pred cCCCC----------C----HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEe---eCCHHHHHHHHHHHHHHHHhhh
Confidence 43210 0 1134445543 477544332221 356899995 4578899999999998876543
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-19 Score=175.88 Aligned_cols=288 Identities=11% Similarity=0.049 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCC-chHHHHHHHHc
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQT-HSALQKAAQIA 192 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~-H~s~~~a~~~~ 192 (486)
..++++++++++|++ + .+++|+|||+|+..++.+++... .. + .++ ..|+++..+ |.+...+....
T Consensus 72 ~~~l~~~la~~~g~~-~-------~v~~~~g~t~a~~~~~~~~~~~~-~~-~---~~g~~~vl~~~~~y~~~~~~~~~~~ 138 (375)
T 2eh6_A 72 QEELAHKLVKHFWTE-G-------KVFFANSGTESVEAAIKLARKYW-RD-K---GKNKWKFISFENSFHGRTYGSLSAT 138 (375)
T ss_dssp HHHHHHHHHHTSSSC-E-------EEEEESSHHHHHHHHHHHHHHHH-HH-T---TCCCCEEEEEBTCCCCSSHHHHHHC
T ss_pred HHHHHHHHHhhcCCC-C-------eEEEeCchHHHHHHHHHHHHHHh-cc-C---CCCCCEEEEECCCcCCCchhhhhhc
Confidence 345668889999884 3 68999999999998887654321 00 0 133 556666665 54444444443
Q ss_pred CCC-----C----CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHh
Q 038818 193 GID-----P----KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRY 259 (486)
Q Consensus 193 G~g-----~----~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~ 259 (486)
|.. . ..+..+|. +|+++|+++++++ +.+|+++.+++++|.+.| +++|.++|++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~ 205 (375)
T 2eh6_A 139 GQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK 205 (375)
T ss_dssp BCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCCCCCceeCCC-------chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh
Confidence 321 0 01333332 5899999888642 457888889999999977 99999999999
Q ss_pred CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 260 SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 260 g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
|+++|+|++|+++...........-+. ..|.++++ |+++++.++|+++++++ .. +.+.. ....
T Consensus 206 ~~~li~De~~~~~~~~~~~~~~~~~~~-~~d~~s~S--K~~~~g~~~G~~~~~~~-~~-~~~~~---~~~~--------- 268 (375)
T 2eh6_A 206 DVLLIIDEVQTGIGRTGEFYAYQHFNL-KPDVIALA--KGLGGGVPIGAILAREE-VA-QSFTP---GSHG--------- 268 (375)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSCCEEEEEEHH-HH-TTCCT---TSCC---------
T ss_pred CCEEEEeccccCCCCCCcchhhhhcCC-CCCEEEEc--ccccCCCCeEEEEEcHH-HH-hhhcC---CCCC---------
Confidence 999999999985322111111001111 37888776 88888888999998753 22 22211 0000
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCC
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGK 419 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~ 419 (486)
.+. ....+...+++..+ +.+.+..++..++++++.+.|++++...+ ++..+++.+.+...
T Consensus 269 ----~~~----~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~~-------- 328 (375)
T 2eh6_A 269 ----STF----GGNPLACRAGTVVV--DEVEKLLPHVREVGNYFKEKLKELGKGKV--KGRGLMLGLELERE-------- 328 (375)
T ss_dssp ----CSS----TTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSSEE--EEETTEEEEECSSC--------
T ss_pred ----CCC----CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eEEEEEEEEEEcCc--------
Confidence 000 11233333333332 11226778888899999999988754222 23345666665421
Q ss_pred CccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 420 ANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 420 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
..++.+.+.++|+.. .+. +..++|+++. ..+++++++++++.|+++
T Consensus 329 --------~~~~~~~l~~~gi~~-~~~---~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 329 --------CKDYVLKALEKGLLI-NCT---AGKVLRFLPP-LIIQKEHIDRAISVLREI 374 (375)
T ss_dssp --------CHHHHHHHHHTTEEC-EEE---TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHCCCEE-ecC---CCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 124566666778643 322 3467999983 577888999999999875
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-18 Score=172.11 Aligned_cols=300 Identities=12% Similarity=0.038 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEe-cCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYG-SDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~ 190 (486)
.....++.+++++++|. + ..++++|||+|+..|+.+++...... | .++..|++ +...|.+...+..
T Consensus 77 ~~~~~~l~~~la~~~~~--~-------~v~~~~gg~ea~~~al~~~~~~~~~~-g---~~~~~vi~~~~~yhg~~~~~~~ 143 (395)
T 3nx3_A 77 NENIAAAAKNLAKASAL--E-------RVFFTNSGTESIEGAMKTARKYAFNK-G---VKGGQFIAFKHSFHGRTLGALS 143 (395)
T ss_dssp CHHHHHHHHHHHHHHTC--S-------EEEEESSHHHHHHHHHHHHHHHHHHT-T---CTTCEEEEETTCCCCSSHHHHT
T ss_pred CHHHHHHHHHHHHhcCC--C-------eEEEeCCHHHHHHHHHHHHHHHhhcc-C---CCCCEEEEEcCCcCCCCHHHHh
Confidence 45566777889998873 2 68999999999999998887653221 1 13334444 4444444333332
Q ss_pred HcCC--------C-CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHH
Q 038818 191 IAGI--------D-PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAK 257 (486)
Q Consensus 191 ~~G~--------g-~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~ 257 (486)
..+. . ...+..+|.+ |+++|++++++. +.+|+++...+++|.+.| +++|+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~ 210 (395)
T 3nx3_A 144 LTANEKYQKPFKPLISGVKFAKYN-------DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKLCD 210 (395)
T ss_dssp TCCCHHHHGGGCSCCSCEEEECTT-------CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHHHHHHHHH
T ss_pred hcCCcccccccCCCCCCcEEeCCC-------CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHHHHHHHHH
Confidence 2220 0 1155556542 799999988632 356777778888899877 999999999
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
+||+++|+|++|.++......+.....++ ..|.++++ |.++++.++|+++.+++-.. +.+... ...
T Consensus 211 ~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~~~~G~~~G~~~~~~~~~~-~~~~~~---~~~------- 276 (395)
T 3nx3_A 211 EKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMTSA--KALGCGLSVGAFVINQKVAS-NSLEAG---DHG------- 276 (395)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGTTTSCCEEEEECHHHHH-HHSCTT---CCS-------
T ss_pred HcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEEec--ccccCCCceEEEEEchhhhh-hhcCCc---ccC-------
Confidence 99999999999976432111111111122 35666654 88887778898887654212 222110 000
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh----CCCCeEEecCCCeeEEEEEeecCCC
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVG----GDNRFEIVAPRNFAVVCFRVLPSAS 413 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~----~~~~~~~~~~~~~~~v~f~~~~~~~ 413 (486)
.+-....+.+.+++..+..-.-++..++..++.+++++.|. ++|.+... ++..+++.+.+....
T Consensus 277 ----------~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~- 344 (395)
T 3nx3_A 277 ----------STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSV- 344 (395)
T ss_dssp ----------SCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS-
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcc-
Confidence 00012334444444333110112344555555555555554 45545433 233456666665321
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 414 GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
...++.+.+.++|+++... +..++|+++ +..+++++++++++.|++++++
T Consensus 345 -------------~~~~~~~~l~~~Gi~v~~~----~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 345 -------------KVAKVIQKCQENALLLISC----GENDLRFLP-PLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp -------------CHHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred -------------hHHHHHHHHHHCCCEEecC----CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 1345677777888754332 356899987 4677888999999999998764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=185.74 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH----
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA---- 188 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a---- 188 (486)
....++.+++++++|.+ ..+++++|++|+..++. ... +++.|+++...|.+....
T Consensus 133 ~~~~~l~~~la~~~g~~---------~~i~~~sGt~al~~~l~-~~~-----------~Gd~Vi~~~~~y~~~~~~~~~~ 191 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD---------RAFCFTSGMAALSAVTH-LIK-----------NGEEIVAGDDVYGGSDRLLSQV 191 (464)
T ss_dssp HHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHT-TSC-----------TTCEEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC---------eEEEECCHHHHHHHHHH-HhC-----------CCCEEEEECCCchhHHHHHHHH
Confidence 35677889999999874 35778888888765443 111 566788888899887654
Q ss_pred HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 189 AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 189 ~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
++..|. +++.+|.+ |+++|+++|++. +.+|+++.++|++|.+.|+++|+++|++||+++++|++
T Consensus 192 ~~~~G~---~v~~v~~~-------d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea 255 (464)
T 1ibj_A 192 VPRSGV---VVKRVNTT-------KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNS 255 (464)
T ss_dssp SGGGTC---EEEEECTT-------SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECT
T ss_pred HHHcCC---EEEEeCCC-------CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECC
Confidence 456687 88888753 889999988643 45888999999999999999999999999999999999
Q ss_pred ccchhccCccchhhhcCCCCCCceeeccccccCCCCcc--eEEEeeCchH
Q 038818 269 YAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC--CCLWVKNPNA 316 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~--g~~~~~~~~~ 316 (486)
|+.+....+ .. .++|.++.++||++++|.|+ |+++++++..
T Consensus 256 ~~~g~~~~~-~~------~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l 298 (464)
T 1ibj_A 256 IMSPVLSRP-LE------LGADIVMHSATKFIAGHSDVMAGVLAVKGEKL 298 (464)
T ss_dssp TTCTTTCCG-GG------TTCSEEEEETTTTTTCSSCCCCEEEEECSHHH
T ss_pred CcccccCCh-hh------cCCEEEEECCcccccCCCCCcEEEEEEChHHH
Confidence 976543222 11 16899999999999988765 8888886544
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=177.22 Aligned_cols=320 Identities=13% Similarity=0.048 Sum_probs=195.6
Q ss_pred HHHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEE--cCCchHHHHHHHHHHHHHHHHHc
Q 038818 89 FLGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVI--QGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 89 ~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
.+.+.+...+.. ....|.......++++.+.+++... +.+.+ ..++ |+||++|+..++.+.+...
T Consensus 48 ~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~-------~v~~~~~~g~~~a~~~~~~~~~~~~---- 115 (394)
T 2ay1_A 48 AVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKSE-------TTATLATVGGTGALRQALELARMAN---- 115 (394)
T ss_dssp HHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCGG-------GEEEEEEEHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCcc-------cEEEEecCCchhHHHHHHHHHHhcC----
Confidence 344444444321 2334544445677777777776432 22333 6777 9999999988877665421
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..+|.++...++..|. +++.+|.+..+++.+|+++|++++++. .....+++.+.++|++|.
T Consensus 116 -----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~~~nptG~ 184 (394)
T 2ay1_A 116 -----PDLRVFVSDPTWPNHVSIMNFMGL---PVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGA 184 (394)
T ss_dssp -----TTCCEEEEESCCHHHHHHHHHHTC---CEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCC
T ss_pred -----CCCEEEEcCCCChhHHHHHHHcCC---ceEEEecccccCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCC
Confidence 345577788899999999999999 999999853235789999999998752 112356777999999999
Q ss_pred cCC---chHHHHHHHHhCceEEeeccccchhccC--c--cchhhhcCCCCCC-ceeeccccccCC-CCcceEEEe--eCc
Q 038818 246 VDP---LGPLCDIAKRYSIWVHVDAAYAGSACIC--P--EFRHFIDGIEGAD-SFSLNAHKWFFT-TLDCCCLWV--KNP 314 (486)
Q Consensus 246 idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~--~--~~~~~~~~~~~aD-si~~~~hK~l~~-p~~~g~~~~--~~~ 314 (486)
+-| +++|+++|++||+++++|++|+++.... + .... +... ..+ .+..+++|+++. ...+|++++ .++
T Consensus 185 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~ 262 (394)
T 2ay1_A 185 NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRL-IASR-IPEVLIAASCSKNFGIYRERTGCLLALCADA 262 (394)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHH-HHHH-CSSEEEEEECTTTTTCGGGCEEEEEEECSSH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHH-Hhhc-CCCEEEEEeccCCCcCcCCccceEEEEeCCH
Confidence 865 6688999999999999999997653210 0 0111 1111 223 456688999974 345788887 344
Q ss_pred hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHH
Q 038818 315 NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 315 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~ 386 (486)
+............... +..+ ...+..+++.+.+. .++++++.++..++++++.+.
T Consensus 263 ~~~~~l~~~~~~~~~~--------------~~~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (394)
T 2ay1_A 263 ATRELAQGAMAFLNRQ--------------TYSF---PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGE 325 (394)
T ss_dssp HHHHHHHHHHHHHHHT--------------TTSS---CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--------------hcCC---CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221111000000000 0000 12233333333331 246777788888889999999
Q ss_pred HhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCC
Q 038818 387 VGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLT 463 (486)
Q Consensus 387 L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~t 463 (486)
|+++. ++++.. +..+.+.+. .-+ . ..+.+.+.+.|+. +.+ .+|+++. .+
T Consensus 326 L~~~~~~~~~~~~~-~~~g~~~~~-~~~-------------~---~~~~~~l~~~gi~-v~~-------~~Ris~~--~~ 377 (394)
T 2ay1_A 326 LRDLSGSDRFGFVA-EHRGMFSRL-GAT-------------P---EQVKRIKEEFGIY-MVG-------DSRINIA--GL 377 (394)
T ss_dssp HHHHHTSSTTTHHH-HCCSSEEEC-CCC-------------H---HHHHHHHHHHCEE-CCT-------TCEEEGG--GC
T ss_pred HHhcCCCCCeeEEc-CCceEEEee-CCC-------------H---HHHHHHHHhCCEE-ecC-------CCeEEee--cC
Confidence 87753 355443 333333331 111 1 2344455566864 333 2699985 46
Q ss_pred cHHHHHHHHHHHHHH
Q 038818 464 EDRHVIAAWKVVQEK 478 (486)
Q Consensus 464 t~~did~~i~~l~~~ 478 (486)
+++++++++++|+++
T Consensus 378 ~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 378 NDNTIPILARAIIEV 392 (394)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHc
Confidence 778999999999876
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-18 Score=172.52 Aligned_cols=355 Identities=11% Similarity=0.051 Sum_probs=211.1
Q ss_pred CHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhc---CCCccccccChhhHHHHHHHHHHHHHHcCC
Q 038818 52 PIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGF---NVVGFNWMSSPAATELENIVMDWLGEMLKL 128 (486)
Q Consensus 52 ~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~---n~~~~~~~~~~~~~~le~~~~~~l~~l~g~ 128 (486)
....+.+.++..-.+...+.....|+++-..++..++ +.+.+.... ......|...++..++.+.+.+++ +|.
T Consensus 35 ~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a-v~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~ 110 (448)
T 3meb_A 35 AILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPA-VKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGK 110 (448)
T ss_dssp TTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHH-HHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCT
T ss_pred hHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHH-HHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCC
Confidence 4566666666554444344444455555443333344 333332222 122334554455566666666665 366
Q ss_pred C-----CCCccCCCcceEE--cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH----HcCCCCC
Q 038818 129 P-----KSFLFSGTGGGVI--QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ----IAGIDPK 197 (486)
Q Consensus 129 ~-----~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~----~~G~g~~ 197 (486)
+ ++ ..++ |+|||+|+..++...... .+++.|+++..+|.++...++ ..|+
T Consensus 111 ~~~~~~~~-------~i~~~~t~ggt~al~l~~~~~~~~---------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~--- 171 (448)
T 3meb_A 111 DSKAAQEG-------RIASCQSLSGTGSLHIGFEFLHLW---------MPKAEFYMPSTTWPNHYGIYDKVFNKLKV--- 171 (448)
T ss_dssp TCHHHHTT-------CEEEEEESHHHHHHHHHHHHHHHH---------CTTCCEEEESSCCTHHHHHHHHHHCTTTS---
T ss_pred CccccCcC-------cEEEEECCcHHHHHHHHHHHHHHh---------CCCCEEEECCCCCHhHHHHHHhhHHhCCC---
Confidence 5 23 6788 999999997644322211 056678889999999999999 8899
Q ss_pred CeEEEec-CCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchh
Q 038818 198 NFRAIKT-TKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 198 ~v~~v~~-d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+++.+|+ ++++++.+|+++|++++++. .....+++.+.++|+||.+-+ +++|+++|++||+++++|++|.++.
T Consensus 172 ~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~ 248 (448)
T 3meb_A 172 PYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFA 248 (448)
T ss_dssp CCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTS
T ss_pred eEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 9999998 54215799999999999752 112457788899999999866 5669999999999999999997754
Q ss_pred ccCc-----cchhhhcCCCCCC-ceeeccccccCCC-CcceEE--Ee--------eCchH---HHHHhcCCcccccCccC
Q 038818 274 CICP-----EFRHFIDGIEGAD-SFSLNAHKWFFTT-LDCCCL--WV--------KNPNA---LIKALSTNPEFLRNKAS 333 (486)
Q Consensus 274 ~~~~-----~~~~~~~~~~~aD-si~~~~hK~l~~p-~~~g~~--~~--------~~~~~---~~~~~~~~~~y~~~~~~ 333 (486)
.... ..+.... . ..+ .++.++||.++.| ..+|++ +. .++.. +...+.. .....
T Consensus 249 ~~~~~~~~~~~~~~~~-~-~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~-- 321 (448)
T 3meb_A 249 TGSFEADAFAVRMFVD-A-GVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL---QIRKT-- 321 (448)
T ss_dssp SSCHHHHTHHHHHHHH-T-TCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH---HHHTT--
T ss_pred CCCcccCchhHHHHhh-c-CCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH---HHhcc--
Confidence 3220 0111111 1 233 5578899999844 447777 55 34311 1111110 00000
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhch--------HHHHHHHHHHHHHHHHHHHHHhCC--CC------eEEec
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV--------ANLRNFLRSHVRMAQLFQELVGGD--NR------FEIVA 397 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~--------~g~~~~~~~~~~~a~~l~~~L~~~--~~------~~~~~ 397 (486)
.-....+..+++...+.. +.++++.++..++++++.+.|+++ ++ ++..
T Consensus 322 ---------------~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~- 385 (448)
T 3meb_A 322 ---------------WSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHI- 385 (448)
T ss_dssp ---------------TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHH-
T ss_pred ---------------cCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCccccccee-
Confidence 001122333444333322 346777788889999999999876 44 4333
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.+..++++|.-.+ .+ +...+ .+.|+. +.++. .|+++.. . ++++|+++++.|.
T Consensus 386 ~~~~g~~~~~~~~--------------~~----~~~~ll~~~gV~-v~~G~------gRis~a~-~-~~~~i~~~~~~l~ 438 (448)
T 3meb_A 386 LTAIGMFTFTGLT--------------PE----HVDYLKEKWSIY-LVKAG------GRMSMCG-L-TESNCDYVAEAIH 438 (448)
T ss_dssp HHCCSSEEECCCC--------------HH----HHHHHHHHHCEE-ECSGG------GEEEGGG-C-CTTTHHHHHHHHH
T ss_pred CCCceEEEecCCC--------------HH----HHHHHHHhCCEE-EeCCC------cEEEEec-C-CHHHHHHHHHHHH
Confidence 2334444442111 22 23333 345764 44421 2999853 2 4447999999999
Q ss_pred HHHHHH
Q 038818 477 EKLDGI 482 (486)
Q Consensus 477 ~~~~~l 482 (486)
++++++
T Consensus 439 ~~l~~~ 444 (448)
T 3meb_A 439 DAVTKL 444 (448)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 988753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=171.34 Aligned_cols=300 Identities=11% Similarity=-0.001 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHcCCC-CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 113 ELENIVMDWLGEMLKLP-KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
....++.+.+++++|.+ .+ .+++|+||++|+..++.+++... ++.+|+.....|.+...++..
T Consensus 86 ~~~~~l~~~la~~~~~~~~~-------~v~~~~gg~ea~~~ai~~~~~~~---------~~~vi~~~p~yh~~~~~~~~~ 149 (419)
T 2eo5_A 86 IPQLELAKKLVTYSPGNFQK-------KVFFSNSGTEAIEASIKVVKNTG---------RKYIIAFLGGFHGRTFGSISL 149 (419)
T ss_dssp HHHHHHHHHHHHHSSCSSCE-------EEEEESSHHHHHHHHHHHHHTTS---------CCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCC-------EEEEeCchHHHHHHHHHHHHHhh---------CCcEEEECCCcCCCCHhhHhh
Confidence 34456678899999986 43 68999999999999988876420 233444444566555555544
Q ss_pred cCC--------C--CCCeEEEecCCCCCcc----------------cCHHHHH-HHHHHHHHCCCccEEEEeecCCcccc
Q 038818 192 AGI--------D--PKNFRAIKTTKSSSFT----------------LTPESLQ-AAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 192 ~G~--------g--~~~v~~v~~d~~~~~~----------------~d~~~L~-~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
.|. + ...++.+|.+. +++ +|+++|+ ++|++.. ....+.+|+++..++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG 226 (419)
T 2eo5_A 150 TASKAVQRSIVGPFMPGVIHVPYPN--PYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGG 226 (419)
T ss_dssp CCSCGGGGCSSCCCCTTEEEECCCC--SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTT
T ss_pred cCCccccccccCCCCCCCEEECCCc--cccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCC
Confidence 331 1 12578888753 232 4788999 8887420 001234566665556789
Q ss_pred ccCC----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHH
Q 038818 245 TVDP----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIK 319 (486)
Q Consensus 245 ~idp----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~ 319 (486)
.+-| +++|+++|++||+++|+|++|.++......+.....++ ..|.++ +.|.++++ .++|+++.+++ ..
T Consensus 227 ~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~~riG~~~~~~~-~~-- 300 (419)
T 2eo5_A 227 YVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT-VPDVIT--LAKALGGGIMPIGATIFRKD-LD-- 300 (419)
T ss_dssp SBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTTSCCEEEEEEGG-GC--
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC-CCCEEE--ecccccCCccceEEEEEchH-hh--
Confidence 8766 99999999999999999999976432111111011122 456665 45988877 78899988754 21
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
.+ .... . .+-....+...+++..+. .+++..++..+++++|.+.|+++ +..+ ++
T Consensus 301 ~~---~~~~-~-----------------~t~~~n~~~~~aa~aal~--~~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~ 354 (419)
T 2eo5_A 301 FK---PGMH-S-----------------NTFGGNALACAIGSKVID--IVKDLLPHVNEIGKIFAEELQGL--ADDV-RG 354 (419)
T ss_dssp CC---------------------------CCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS--SSEE-EE
T ss_pred cC---Cccc-C-----------------CCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh--hhhe-Ee
Confidence 11 0000 0 000123344444444331 12237788888999999999876 2222 23
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
..+++.+.+.+. ..... +.+.|.++|+++... +..++|+++ +..+++++++++++.|++++
T Consensus 355 ~g~~~~i~~~~~-------------~~~~~-~~~~l~~~Gv~v~~~----~~~~lRis~-~~~~t~e~i~~~l~~l~~~l 415 (419)
T 2eo5_A 355 IGLAWGLEYNEK-------------KVRDR-IIGESFKRGLLLLPA----GRSAIRVIP-PLVISEEEAKQGLDILKKVI 415 (419)
T ss_dssp ETTEEEEECSCH-------------HHHHH-HHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEecC-------------ccHHH-HHHHHHHCCCEEecC----CCCEEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 345666665321 12244 777777888754332 245799987 45778889999999999987
Q ss_pred HHH
Q 038818 480 DGI 482 (486)
Q Consensus 480 ~~l 482 (486)
+++
T Consensus 416 ~~~ 418 (419)
T 2eo5_A 416 KVV 418 (419)
T ss_dssp HHC
T ss_pred Hhc
Confidence 654
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=173.90 Aligned_cols=229 Identities=16% Similarity=0.113 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH-----
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA----- 189 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~----- 189 (486)
..++.+.++++.|.+ ..+++++|++|+..+ ..... +++.|+++...|.+....+
T Consensus 69 ~~~l~~~la~l~g~~---------~~~~~~sG~~Ai~~~-~~l~~-----------~gd~Vi~~~~~y~~~~~~~~~~~~ 127 (400)
T 3nmy_A 69 RFAYERCVAALEGGT---------RAFAFASGMAATSTV-MELLD-----------AGSHVVAMDDLYGGTFRLFERVRR 127 (400)
T ss_dssp HHHHHHHHHHHHTCS---------EEEEESSHHHHHHHH-HTTSC-----------TTCEEEEESSCCHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhCCC---------CEEEecCHHHHHHHH-HHHcC-----------CCCEEEEeCCCchHHHHHHHHhhH
Confidence 334445678888864 357788888887653 22111 5667888888888655543
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
...|+ +++.++.+ |+++|+++|++. +.+|+++.++|++|.+.|+++|+++|++||+++++|++|
T Consensus 128 ~~~g~---~~~~v~~~-------d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~ 191 (400)
T 3nmy_A 128 RTAGL---DFSFVDLT-------DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTF 191 (400)
T ss_dssp HHHCC---EEEEECTT-------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred hhcCe---EEEEECCC-------CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 33588 88888753 899999988653 457888999999999999999999999999999999999
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccCCCC--cce-EEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCC-CLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
+.+....+. . .++|.++.+++|++++|. -+| ++++++++....... ...+
T Consensus 192 ~~~~~~~~~-~------~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~-~~~~------------------- 244 (400)
T 3nmy_A 192 ASPMLQRPL-S------LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF-LQNS------------------- 244 (400)
T ss_dssp THHHHCCGG-G------GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH-HHHH-------------------
T ss_pred cccccCChh-h------cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH-HHHh-------------------
Confidence 865543321 1 169999999999999773 345 456666554332111 0000
Q ss_pred cCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeEEEEEee
Q 038818 347 TLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAVVCFRVL 409 (486)
Q Consensus 347 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v~f~~~ 409 (486)
.+.....+..|..++. .+.+..++++..++++++.+.|++.|.++.+..| ...+++|.+.
T Consensus 245 -~g~~~~~~~a~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 245 -IGGVQGPFDSFLALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp -HCCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred -cCCCCCHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 1112345666777664 4667788899999999999999999988755332 2458888885
Q ss_pred c
Q 038818 410 P 410 (486)
Q Consensus 410 ~ 410 (486)
+
T Consensus 322 ~ 322 (400)
T 3nmy_A 322 G 322 (400)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=168.93 Aligned_cols=303 Identities=9% Similarity=-0.015 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC-CCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD-QTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a~~ 190 (486)
.....++.+.+++++|. + ..++++|||+||..++.+++.......|.. .++..|++.+ ..|.+...++.
T Consensus 106 ~~~~~~l~~~la~~~g~--~-------~v~~~~sGseA~~~al~~a~~~~~~~~g~~-~gr~~vi~~~~~yhg~~~~~~~ 175 (433)
T 1z7d_A 106 SVPLGICERYLTNLLGY--D-------KVLMMNTGAEANETAYKLCRKWGYEVKKIP-ENMAKIVVCKNNFSGRTLGCIS 175 (433)
T ss_dssp EHHHHHHHHHHHHHHTC--S-------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC-TTCCEEEEETTC----------
T ss_pred CHHHHHHHHHHHhhcCC--C-------eEEEeCCHHHHHHHHHHHHHHHhhhccCCC-CCCCeEEEEeCCcCCcchhhhc
Confidence 34455666778888774 2 589999999999999998875321111100 0224444444 45555555555
Q ss_pred HcCC-------C--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC----CchHHHHHHH
Q 038818 191 IAGI-------D--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD----PLGPLCDIAK 257 (486)
Q Consensus 191 ~~G~-------g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id----pl~~I~~i~~ 257 (486)
..|. + ...++.+|. .|+++|+++|+. ..+.+|+++...+++|.+. ++++|.++|+
T Consensus 176 ~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 243 (433)
T 1z7d_A 176 ASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICK 243 (433)
T ss_dssp ----------------CEEEECT-------TCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred ccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHH
Confidence 5441 0 014555553 289999999851 1245677776666788764 7999999999
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
+||++|++|++|.++......+.....++ ..|.++ ..|++++. ..+|+++.+++ .. +.+. + .. .
T Consensus 244 ~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~~G~~~~G~v~~~~~-~~-~~l~--~-~~-~------ 308 (433)
T 1z7d_A 244 KYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVIL--LGKALSGGHYPISAVLANDD-IM-LVIK--P-GE-H------ 308 (433)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTSSCCEEEEECHH-HH-TTCC--T-TC-C------
T ss_pred HcCCEEEEecCccCCCcCCcchhhHhcCC-CCCEEE--ECccccCCCCCeEEEEECHH-HH-hhhc--c-cc-c------
Confidence 99999999999976322111111011122 467764 56999866 56898888653 22 2221 1 00 0
Q ss_pred CccCCCCccccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEee
Q 038818 337 QVVDYKDWQITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRVL 409 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~ 409 (486)
..++ ....+.+. .+++.+.. +++.++..++++++.+.|+++ |.+..+ ++...++.+.+.
T Consensus 309 ------~~t~----~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~ 374 (433)
T 1z7d_A 309 ------GSTY----GGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFK 374 (433)
T ss_dssp ------CCTT----TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEEC
T ss_pred ------cccC----CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEc
Confidence 0011 12233333 33433322 245677777888888888653 333222 233456667664
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
... . ...++.+.|.++|++ +.+. +..++|+++ +...+++||+++++.|+++++++.
T Consensus 375 ~~~---------~----~~~~~~~~l~~~Gv~-v~~~---~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 375 NEL---------V----NVLDICLKLKENGLI-TRDV---HDKTIRLTP-PLCITKEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp TTT---------C----CHHHHHHHHHHTTEE-CCEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCh---------h----HHHHHHHHHHHCCeE-EecC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHHHH
Confidence 320 0 134567777778874 3332 346899987 456788999999999999987764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=168.86 Aligned_cols=331 Identities=11% Similarity=0.041 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHH-HHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQK-AAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~-a~~ 190 (486)
.....++.+++++.++.+.+ ..++|+||++|+..++.+++...... |.. ++..|++....++.... +..
T Consensus 71 ~~~~~~l~~~la~~~~~~~~-------~v~~~~gg~ea~~~al~~~~~~~~~~-g~~--~~~~vi~~~~~yhg~~~~~~~ 140 (430)
T 3i4j_A 71 SDVLEEYAGRLARFVGLPTF-------RFWAVSGGSEATESAVKLARQYHVER-GEP--GRFKVITRVPSYHGASLGSLA 140 (430)
T ss_dssp EHHHHHHHHHHHHHTTCTTC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTC----------
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCcHHHHHHHHHHHHHHHHHhc-CCC--CCcEEEEEeCCcCCCCccccc
Confidence 45666778899999987654 68999999999999999887653221 111 34445555444443322 222
Q ss_pred HcCCCC---------C--CeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCc-cccccCC----chHHH
Q 038818 191 IAGIDP---------K--NFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTT-AITTVDP----LGPLC 253 (486)
Q Consensus 191 ~~G~g~---------~--~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt-~~G~idp----l~~I~ 253 (486)
..+... . .+..+|.+.. ..+..|+++|+++|++.. ...+.+|+++..++ ++|.+.+ +++|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~ 218 (430)
T 3i4j_A 141 ASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVR 218 (430)
T ss_dssp ---------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHH
T ss_pred ccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHH
Confidence 222100 0 3344554321 013467899999997531 01245677777777 8888777 99999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhc-CCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC-cccccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFID-GIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN-PEFLRN 330 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~-~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~-~~y~~~ 330 (486)
++|++||+++|+|++|.++......+..... ++ ..|.+++ .|.+++. ...|.++.++ +... .+... ..+...
T Consensus 219 ~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~-~~di~t~--sK~l~~G~~r~G~~~~~~-~i~~-~~~~~~~~~~~~ 293 (430)
T 3i4j_A 219 DICDEAGIIFIADEVMSGMGRCGSPLALSRWSGV-TPDIAVL--GKGLAAGYAPLAGLLAAP-QVYE-TVMGGSGAFMHG 293 (430)
T ss_dssp HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTC-CCSEEEE--CGGGTTTSSCCEEEEECH-HHHH-HHHHTTCBCCCC
T ss_pred HHHHHcCCEEEEechhhCCCcccchhhhhhhcCC-CCcEEEE--cccccCCccccEEEEECH-HHHH-HHhccCCccccc
Confidence 9999999999999999765321111111111 22 3566665 4998865 5678887744 3332 22211 111110
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh----CCCCeEEecCCCeeEEEE
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVG----GDNRFEIVAPRNFAVVCF 406 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~----~~~~~~~~~~~~~~~v~f 406 (486)
.+-....+.+.+++..+..-.-+++.++..++.+++++.|. ++|.+..+ ++..+++.+
T Consensus 294 -----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~ 355 (430)
T 3i4j_A 294 -----------------FTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGV 355 (430)
T ss_dssp -----------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEE
T ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEE
Confidence 01112334444444433210112344455555555555543 45666554 233455666
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-eE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG-MV--AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~--~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.+...... +.........++.+.+.++|+++.... .. .+..++|+++ ....++++++++++.|+++++++.
T Consensus 356 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 356 VLGDLATG-----QAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGP-PLSITAAEVDGLLALLAGALEDVL 429 (430)
T ss_dssp EEC-----------------CHHHHHHHHHHTTEECC-----------CEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred Eecccccc-----CCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 55421100 000000113567778888897543321 11 1356899987 356788899999999999988764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-18 Score=165.51 Aligned_cols=270 Identities=12% Similarity=0.035 Sum_probs=181.0
Q ss_pred HHHHHHHHHcC---CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 117 IVMDWLGEMLK---LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 117 ~~~~~l~~l~g---~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
++++.+++++| .+.+ ..++|+||++++..++.+. ++.|+++ .+|.++...++..|
T Consensus 60 ~lr~~la~~~~~~~~~~~-------~v~~~~G~~~al~~~~~~~--------------gd~Vl~~-p~y~~~~~~~~~~g 117 (335)
T 1uu1_A 60 ELIEKILSYLDTDFLSKN-------NVSVGNGADEIIYVMMLMF--------------DRSVFFP-PTYSCYRIFAKAVG 117 (335)
T ss_dssp HHHHHHHHHHTCSSCCGG-------GEEEESSHHHHHHHHHHHS--------------SEEEECS-SSCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCHH-------HEEEcCChHHHHHHHHHHh--------------CCcEEEC-CCcHHHHHHHHHcC
Confidence 34455666666 5544 7899999999987766553 2457788 99999999999999
Q ss_pred CCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchh
Q 038818 194 IDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 194 ~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
. +++.+|+++ ++.+|+++| + .+.+|+++.++|++|.+-|.+++.++++..| ++++|++|+.+.
T Consensus 118 ~---~~~~v~~~~--~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~ 180 (335)
T 1uu1_A 118 A---KFLEVPLTK--DLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFH 180 (335)
T ss_dssp C---EEEECCCCT--TSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHH
T ss_pred C---eEEEeccCC--CCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhc
Confidence 9 999999874 468888877 1 2457777889999999999999999999999 999999997643
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF 352 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~ 352 (486)
. . .....+. ....+.+..+++|+++.| ..+|+++++ ++...........| ..
T Consensus 181 ~-~-~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~-----------------------~~ 233 (335)
T 1uu1_A 181 G-E-SYVDFLK-KYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLPF-----------------------NV 233 (335)
T ss_dssp C-C-CCGGGGG-TCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHSCTT-----------------------CS
T ss_pred c-h-hHHHHhh-hCCCEEEEecchhhcCCcccCeEEEEeC-HHHHHHHHHhcCCC-----------------------Cc
Confidence 2 1 1111111 124567788999999743 357888884 43332211111000 11
Q ss_pred CchHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHH
Q 038818 353 RALKLWLVLRSFG-VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKL 431 (486)
Q Consensus 353 ~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l 431 (486)
..+..+++.+.+. .++++++.++..++++++.+.|+++ ++++. ++..+.+.+.+.. ....++
T Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~---------------~~~~~~ 296 (335)
T 1uu1_A 234 SYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEK---------------EEKERL 296 (335)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCT---------------HHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCC---------------CCHHHH
Confidence 2333333333332 2467788888899999999999887 67653 4445555555431 113456
Q ss_pred HHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 432 LESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 432 ~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+.|.++|+.+ .+ +.+++|+++. +++|++++++.|+++
T Consensus 297 ~~~l~~~gi~v-~~----~~~~iRis~~----~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 297 LEHLRTKNVAV-RS----FREGVRITIG----KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHTEEE-EE----ETTEEEEECC----CHHHHHHHHHHHHCC
T ss_pred HHHHHHCCEEE-EE----CCCeEEEEeC----CHHHHHHHHHHHHhh
Confidence 77777778754 33 2357999984 246899999988753
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=177.48 Aligned_cols=318 Identities=12% Similarity=0.059 Sum_probs=196.8
Q ss_pred HHHHHHhhcCC-CccccccChhhHHHHHHHHHHHHHHcCC--CCCCccCCCcceEE--cCCchHHHHHHHHHHHHHHHHH
Q 038818 90 LGEMLSSGFNV-VGFNWMSSPAATELENIVMDWLGEMLKL--PKSFLFSGTGGGVI--QGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 90 ~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~l~~l~g~--~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~ 164 (486)
+.+.+...+.. ....|...+...++++.+.+++.+..+. +++ ..++ |+||++|+..++.+.+...
T Consensus 49 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-------~v~~~~~~g~~~a~~~~~~~~~~~~--- 118 (396)
T 2q7w_A 49 VKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDK-------RARTAQTPGGTGALRVAADFLAKNT--- 118 (396)
T ss_dssp HHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-------CEEEEEESHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccc-------cEEEEecccchhhHHHHHHHHHHhC---
Confidence 44444444321 2334544555677888777777544332 222 5676 9999999988876654320
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
+++.|++...+|.++...++..|. +++.+|.++.+++.+|+++|++++++. .....+++.+.++|++|
T Consensus 119 ------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG 186 (396)
T 2q7w_A 119 ------SVKRVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTG 186 (396)
T ss_dssp ------CCCEEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTC
T ss_pred ------CCCEEEEcCCCchhHHHHHHHcCC---ceEEEecccCCCCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCC
Confidence 566788888999999999999999 999999853235789999999998642 11235677899999999
Q ss_pred ccCC---chHHHHHHHHhCceEEeeccccchhccC--c--cchhhhcCCCCCCceeeccccccCC-CCcceEEEe--eCc
Q 038818 245 TVDP---LGPLCDIAKRYSIWVHVDAAYAGSACIC--P--EFRHFIDGIEGADSFSLNAHKWFFT-TLDCCCLWV--KNP 314 (486)
Q Consensus 245 ~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~--~--~~~~~~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~--~~~ 314 (486)
.+-| +++|+++|++||+++++|++|+++.... + .... +.....-+.+..+++|+++. ...+|++++ .++
T Consensus 187 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~ 265 (396)
T 2q7w_A 187 IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA-FAAMHKELIVASSYSXNFGLYNERVGACTLVAADS 265 (396)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHH-HHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSH
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHH-HHhcCCcEEEEEeccccccccccccceEEEEcCCH
Confidence 9855 6689999999999999999997643210 0 1111 11111234667889999974 344788886 344
Q ss_pred hH---HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHH
Q 038818 315 NA---LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 315 ~~---~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l 383 (486)
+. +...+.. .... +.. ....+..+++...+. .+.++++.++..++++++
T Consensus 266 ~~~~~~~~~~~~---~~~~--------------~~~---~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 325 (396)
T 2q7w_A 266 ETVDRAFSQMKA---AIRA--------------NYS---NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLF 325 (396)
T ss_dssp HHHHHHHHHHHH---HHHT--------------TTS---SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHhh--------------ccC---CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1111110 0000 000 012333444444432 245667777888899999
Q ss_pred HHHHhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecC
Q 038818 384 QELVGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGA 460 (486)
Q Consensus 384 ~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~ 460 (486)
.+.|+++. ++++. ++..+++.|.-.+ . ..+.+.+.+.|+. +.+ .+|+++..
T Consensus 326 ~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~---~~~~~~l~~~gv~-v~~-------~~Ris~~~ 379 (396)
T 2q7w_A 326 VNTLQEKGANRDFSFI-IKQNGMFSFSGLT--------------K---EQVLRLREEFGVY-AVA-------SGRVNVAG 379 (396)
T ss_dssp HHHHHHTTCCSCCTHH-HHCCSSEEECCCC--------------H---HHHHHHHHHHCEE-CCT-------TCEEEGGG
T ss_pred HHHHHhcCCCCCccee-cCCCceEEEecCC--------------H---HHHHHHHHhcCee-ecC-------CceEEEee
Confidence 99998873 36544 3344444432111 1 2344455566864 333 26999853
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~ 478 (486)
.++++++++++.|+++
T Consensus 380 --~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 380 --MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp --CCTTTHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHhc
Confidence 3677999999999875
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=178.80 Aligned_cols=360 Identities=8% Similarity=0.016 Sum_probs=214.5
Q ss_pred HHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHc-C-CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 86 IAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEML-K-LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~-g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
++.++.++..+.... ..+.......++++.+.+++.+.. + .+... ....++|+|||+|+..++.+.....+
T Consensus 117 ~~~~v~a~~~~~~~~--~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~----~~~i~~t~G~t~al~~~~~~l~~~~l- 189 (533)
T 3f6t_A 117 RDKVVAEWVNGAVAN--NYPVPDRCLVNTEKIINYFLQELSYKDANLAE----QTDLFPTEGGTAAIVYAFHSLAENHL- 189 (533)
T ss_dssp HHHHHHHHHHHHHTC--SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGG----GEEEEEEEHHHHHHHHHHHHHHHTTS-
T ss_pred CcHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCC----cceEEEECCHHHHHHHHHHHhhhhhc-
Confidence 567777666655432 122234456789999999997773 3 32210 02689999999999877765322100
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC--CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCc
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK--SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTT 241 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~--~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt 241 (486)
-.+++.|+++..+|.++..+++..|. +++.+|++. +.++.+|+++|++++++. +.+|+++.++|
T Consensus 190 -----~~~gd~Viv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~d~~~l~~~l~~~------~k~v~l~~p~N 255 (533)
T 3f6t_A 190 -----LKKGDKIAINEPIFTPYLRIPELKDY---ELVEVDLHSYEKNDWEIEPNEIEKLKDPS------IKALIVVNPTN 255 (533)
T ss_dssp -----SCTTCEEEEESSCCHHHHTSGGGGGS---EEEEECCCEETTTTSEECHHHHHHHSCTT------EEEEEEESSCT
T ss_pred -----cCCcCEEEEcCCCcHHHHHHHHHcCC---eEEEEEecCCcccCCCCCHHHHHHHhCCC------CeEEEEeCCCC
Confidence 01567888999999999999999999 899999864 346899999999988643 45788889999
Q ss_pred cccccCCch---HHHHHHH-HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchH
Q 038818 242 AITTVDPLG---PLCDIAK-RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNA 316 (486)
Q Consensus 242 ~~G~idpl~---~I~~i~~-~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~ 316 (486)
++|.+-|.+ +|+++|+ +||+++++|++|+.+......... .....+.++.+++|.++.| ..+|+++.+++..
T Consensus 256 PtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~---~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~ 332 (533)
T 3f6t_A 256 PTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYS---VVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNV 332 (533)
T ss_dssp TTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHH---HSGGGEEEEEESHHHHTCGGGCEEEEEEESSCH
T ss_pred CCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhh---cCCCCEEEEecCcccCCCcccceEEEEECcHHH
Confidence 999997765 8888888 689999999999865432211111 1124557888999999743 3489988887744
Q ss_pred HHHHhcCCcc---------cccCccCCCCCccCC--------CCccccCCCCCCchHHHH----HHHHh--------chH
Q 038818 317 LIKALSTNPE---------FLRNKASDSKQVVDY--------KDWQITLSRRFRALKLWL----VLRSF--------GVA 367 (486)
Q Consensus 317 ~~~~~~~~~~---------y~~~~~~~~~~~~~~--------~~~~~~~sr~~~~l~~~~----~l~~~--------g~~ 367 (486)
+.+....-++ |-.... ......+ .......+.........+ ++..+ ..+
T Consensus 333 ~~~li~~l~~~~~~~~~~~~~~~~~--~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~ 410 (533)
T 3f6t_A 333 FDDNIAHLDKVELRQLHKRYSSVVL--DPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDP 410 (533)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTTCS--CGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCH
T ss_pred HHHHHHhcchhhHHHHHhhhhcccc--CcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHH
Confidence 3322211110 000000 0000000 000000000111222221 23333 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHH---------HHHHHHHHH-H
Q 038818 368 NLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANE---------LNRKLLESI-N 436 (486)
Q Consensus 368 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l-~ 436 (486)
.++++.++..++++++.+.|. + ++.+. ++..+.+.+ .+..... ...... ...++..++ .
T Consensus 411 ~~~~~~~~~~~r~~~l~~~L~-~-~~~~~-~~~~g~~~~~~l~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~ll~ 480 (533)
T 3f6t_A 411 YIDIARKLVSERYDQLHDAMQ-A-PKDET-DTNTHYYSLIDIYRLAE-------KIYGKEFRDYLTNNFEQVDFLLKLAE 480 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-C-CCCCS-TTBCCSEEEEEHHHHHH-------HHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-C-Ccccc-CCCceEEEEEehHhhhh-------hccchHHHHHhhccCCHHHHHHHHHH
Confidence 677778888889999999997 5 45543 444444443 2221000 000000 012333333 4
Q ss_pred hcCcEEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 437 ASGQLYVSHGMVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 437 ~~g~~~~~~~~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.|+.+.++..+. +.+++|+++.+ .++++|+++++.|.++++++.
T Consensus 481 ~~GV~v~pg~~f~~~~~~iRls~a~--~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 481 KNGVVLVDGVGFGAKPGELRVSQAN--LPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp HTTSSSCTTEEECSSTTEEEEESSS--SCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEeCCcccCCCCCEEEEEEee--CCHHHHHHHHHHHHHHHHHHH
Confidence 5687543333222 25689999853 467799999999999987764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=167.20 Aligned_cols=329 Identities=11% Similarity=0.070 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.+.++++++...+ ..++|+|||+|+..++.+++.... ..|..+ ++.+|+.+...|.+...++..
T Consensus 92 ~~~~~~l~~~la~~~~~~~~-------~v~~~~ggsea~~~al~~~~~~~~-~~g~~~-~~~vi~~~~~yhg~~~~~~~~ 162 (449)
T 3a8u_X 92 HPLSFQLAEKITDLTPGNLN-------HVFFTDSGSECALTAVKMVRAYWR-LKGQAT-KTKMIGRARGYHGVNIAGTSL 162 (449)
T ss_dssp CHHHHHHHHHHHTTSSTTEE-------EEEEESSHHHHHHHHHHHHHHHHH-HTTCTT-CCEEEEETTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEcCcHHHHHHHHHHHHHHHHH-hcCCCC-CCEEEEECCCcCCCChhhhhc
Confidence 34555677888888875443 689999999999999988875321 111110 233444465666665656665
Q ss_pred cCC-------C--CCCeEEEecCCC--CC-cccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---
Q 038818 192 AGI-------D--PKNFRAIKTTKS--SS-FTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP--- 248 (486)
Q Consensus 192 ~G~-------g--~~~v~~v~~d~~--~~-~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp--- 248 (486)
.|. + ...+..++++.. .+ ..+| +++|+++|++.. ...+.+|+++...+++|.+.|
T Consensus 163 ~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~ 240 (449)
T 3a8u_X 163 GGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEG 240 (449)
T ss_dssp CCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTT
T ss_pred cCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHH
Confidence 542 1 114566665421 00 0246 999999997531 012456666666677998888
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcc
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.+++ .|++++. ...|++++++ +... .+.....
T Consensus 241 ~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~~~G~~~~~~-~~~~-~l~~~~~ 315 (449)
T 3a8u_X 241 YLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGV-TPDLMCI--AKQVTNGAIPMGAVIAST-EIYQ-TFMNQPT 315 (449)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEH-HHHH-HHHTCSS
T ss_pred HHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCC-CCCEEEE--cccccCCCCceEEEEECH-HHHH-HhhccCc
Confidence 99999999999999999999965422111111111122 3576644 5998854 4588888875 3332 3321100
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe--cCCCeeEE
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--APRNFAVV 404 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~--~~~~~~~v 404 (486)
... ... + ....+-....+.+.+++..+..-.-+++.++..++.+++++.|++++.+.++ .++...++
T Consensus 316 ---~~~---~~~--~---~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~ 384 (449)
T 3a8u_X 316 ---PEY---AVE--F---PHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAG 384 (449)
T ss_dssp ---CTT---SCS--S---CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE
T ss_pred ---ccc---ccc--c---cccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEE
Confidence 000 000 0 0001111233333333333211000246677888889999998774322211 12334566
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+.+.... ... ......+.+.|.++|+++ .+. + .++|+++. ..+++++++++++.|+++++++
T Consensus 385 ~i~~~~~~--------~~~-~~~~~~~~~~l~~~Gv~v-~~~---g-~~iRis~~-~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 385 AIQIAPRD--------GDA-IVRPFEAGMALWKAGFYV-RFG---G-DTLQFGPT-FNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp EEEECCBT--------TBS-SHHHHHHHHHHHHHTEEC-EEE---T-TEEEECCC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCc--------ccc-cccHHHHHHHHHHCCcEE-ecC---C-CEEEEECC-CcCCHHHHHHHHHHHHHHHHHH
Confidence 66665321 000 001124666777778753 332 3 68999973 4778889999999999988765
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=172.25 Aligned_cols=235 Identities=12% Similarity=0.069 Sum_probs=160.8
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEE---cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC-CCchHHH------
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVI---QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD-QTHSALQ------ 186 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~---t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~------ 186 (486)
++.+.+++++|.+. .++ ++|||+||..++.+... +++.|+++. ..|....
T Consensus 77 ~Le~~lA~l~g~e~---------alv~p~~~sGt~Ai~~al~all~-----------pGD~Vl~~~~~~y~~~~~~~g~~ 136 (427)
T 3i16_A 77 SLDAVYARVFNTES---------ALVRPHFVNGTHALGAALFGNLR-----------PGNTMLSVCGEPYDTLHDVIGIT 136 (427)
T ss_dssp HHHHHHHHHHTCSE---------EEEETTCCSHHHHHHHHHHHHCC-----------TTCEEEESSSSCCGGGHHHHTCS
T ss_pred HHHHHHHHHhCCcc---------eEEeCCCccHHHHHHHHHHHHhC-----------CCCEEEEeCCCccHHHHHHHhcc
Confidence 34467899999864 355 89999999877766533 667788887 7776655
Q ss_pred -----HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec----CCccccccCCchHHHHHHH
Q 038818 187 -----KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV----GTTAITTVDPLGPLCDIAK 257 (486)
Q Consensus 187 -----~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~----gtt~~G~idpl~~I~~i~~ 257 (486)
..++..|+ +++.+|+++ ++.+|+++|++++++. ..+.+|+++. ++|++|.+.|+++|+++|+
T Consensus 137 ~~~~~~~l~~~G~---~~~~v~~~~--~g~~D~e~l~~~l~~~----~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~ 207 (427)
T 3i16_A 137 ENSNMGSLKEFGI---NYKQVDLKE--DGKPNLEEIEKVLKED----ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVK 207 (427)
T ss_dssp CCCSSCCTGGGTC---EEEECCCCT--TSSCCHHHHHHHHHTC----TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHcCC---EEEEecCcc--CCCcCHHHHHHHhhCC----CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHH
Confidence 33455688 888888875 5689999999999731 1245788887 8999999999999999999
Q ss_pred H--hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcC-CcccccCcc
Q 038818 258 R--YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALST-NPEFLRNKA 332 (486)
Q Consensus 258 ~--~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~-~~~y~~~~~ 332 (486)
+ +|+++|||++|+.+........ .++|.++.++||+++++. .+|+++.+ ++...+.... ....+.
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p~~------~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g--- 277 (427)
T 3i16_A 208 NIRKDIICFVDNCYGEFMDTKEPTD------VGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIG--- 277 (427)
T ss_dssp HHCTTSEEEEECTTTTTSSSSCGGG------GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTG---
T ss_pred HhCCCCEEEEECCCccccccCCccc------cCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccC---
Confidence 9 9999999999986553221111 268999999999998742 24666654 4443322110 111110
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee-----EEEEE
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA-----VVCFR 407 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-----~v~f~ 407 (486)
...+-.+. ..|..++ |......++++..+++.++++.|+++ ++++. |.... +++|.
T Consensus 278 -------------~~~~~~~~--~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~~~~~~i~~i~ 338 (427)
T 3i16_A 278 -------------GECGSTFG--VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELA-GFEVM-PKYDEKRSDIIQSIK 338 (427)
T ss_dssp -------------GGCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSCEEEE
T ss_pred -------------ccCCccHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCCccEEEEEE
Confidence 01110011 1355554 34556778899999999999999998 56774 33334 77887
Q ss_pred ee
Q 038818 408 VL 409 (486)
Q Consensus 408 ~~ 409 (486)
+.
T Consensus 339 l~ 340 (427)
T 3i16_A 339 FN 340 (427)
T ss_dssp CS
T ss_pred EC
Confidence 75
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-18 Score=171.20 Aligned_cols=301 Identities=10% Similarity=0.019 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
...++.+++++++|. + ..++++||++|+..++.+++.......|....++.+|+.....|.+...++...|
T Consensus 119 ~~~~l~~~la~~~g~--~-------~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g 189 (439)
T 2oat_A 119 VLGEYEEYITKLFNY--H-------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSST 189 (439)
T ss_dssp SHHHHHHHHHHHHTC--S-------EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC--C-------EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCC
Confidence 344555667777773 2 5899999999999999988753211111000013455555556666666655554
Q ss_pred C-------C--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC----CchHHHHHHHHhC
Q 038818 194 I-------D--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD----PLGPLCDIAKRYS 260 (486)
Q Consensus 194 ~-------g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id----pl~~I~~i~~~~g 260 (486)
. + ...++.+|.+ |+++|+++|+. ..+.+|+++...+++|.+. ++++|.++|++||
T Consensus 190 ~~~~~~~~~p~~~~v~~~~~~-------d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 257 (439)
T 2oat_A 190 DPTSYDGFGPFMPGFDIIPYN-------DLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQ 257 (439)
T ss_dssp CHHHHTTSCSCCTTEEEECSS-------CHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred ChhcccCCCCCCCCeEEeCCC-------CHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 1 1 0256667642 89999998851 1245677766666788765 7999999999999
Q ss_pred ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
+++++|++|.++......+.....++ ..|.+ +.+|++++. ...|+++++++ .. +.+.. ....
T Consensus 258 illI~DEv~~g~g~~g~~~~~~~~~~-~~Di~--t~sK~l~~G~~~~G~v~~~~~-~~-~~l~~---~~~~--------- 320 (439)
T 2oat_A 258 VLFIADEIQTGLARTGRWLAVDYENV-RPDIV--LLGKALSGGLYPVSAVLCDDD-IM-LTIKP---GEHG--------- 320 (439)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGTTSSCCEEEEECHH-HH-TTSCT---TSSC---------
T ss_pred CEEEEeccccCCccCCcchhHHHhCC-CCcEE--EecccccCCCCCeEEEEECHH-HH-hccCC---CCcc---------
Confidence 99999999965321111111011122 46766 456999876 56898888753 22 22211 0000
Q ss_pred CCCCccccCCCCCCchHH---HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe--cCCCeeEEEEEeecCCCC
Q 038818 340 DYKDWQITLSRRFRALKL---WLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV--APRNFAVVCFRVLPSASG 414 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~--~~~~~~~v~f~~~~~~~~ 414 (486)
.++ ....+.+ ..+++.+.. ++..++..++++++++.|+++ ++.++ .++...++.+.+....
T Consensus 321 ----~t~----~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~-- 386 (439)
T 2oat_A 321 ----STY----GGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETK-- 386 (439)
T ss_dssp ----CSS----TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCS--
T ss_pred ----cCC----CcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCc--
Confidence 011 1123333 334443322 246778888999999999876 33221 1223456666664320
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.. ...++.+.+.++|++ +.+ .+..++|+++ +...+++|++++++.|++++++
T Consensus 387 ------~~----~~~~l~~~l~~~Gv~-v~~---~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 387 ------DW----DAWKVCLRLRDNGLL-AKP---THGDIIRFAP-PLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp ------SC----CHHHHHHHHHHTTEE-CCB---SSSSEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------cH----HHHHHHHHHHHCCeE-Eec---CCCCEEEEEC-ccCCCHHHHHHHHHHHHHHHHh
Confidence 00 123567777778874 333 2356899987 4577889999999999998764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=171.98 Aligned_cols=234 Identities=10% Similarity=-0.008 Sum_probs=160.2
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEE---cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC-CCchHHHHH---
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVI---QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD-QTHSALQKA--- 188 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~---t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a--- 188 (486)
.++.+.+++++|.+. .++ ++|||+||..++.+... +++.|+++. ..|......
T Consensus 62 ~~Le~~lA~l~g~e~---------alv~p~~~sGt~Ai~~al~all~-----------~GD~Vl~~~~~~y~~~~~~~~~ 121 (409)
T 3jzl_A 62 DTLERVYATVFKTEA---------ALVRPQIISGTHAISTVLFGILR-----------PDDELLYITGQPYDTLEEIVGI 121 (409)
T ss_dssp HHHHHHHHHHHTCSE---------EEEETTSCSHHHHHHHHHHHHCC-----------TTCEEEECSSSCCTTHHHHHTS
T ss_pred HHHHHHHHHHhCCCc---------EEEECCCccHHHHHHHHHHHhcC-----------CCCEEEEeCCCCcHhHHHHHhc
Confidence 344467889999764 355 89999999877766533 667788887 777776643
Q ss_pred -------HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec----CCccccccCCchHHHHHHH
Q 038818 189 -------AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV----GTTAITTVDPLGPLCDIAK 257 (486)
Q Consensus 189 -------~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~----gtt~~G~idpl~~I~~i~~ 257 (486)
++..|+ +++.+|+++ ++.+|+++|++++++. +.+|+++. ++|++|.+.|+++|+++|+
T Consensus 122 ~g~~~~~l~~~G~---~~~~v~~~~--~g~~d~e~l~~ai~~~------tklV~i~~s~g~p~nptg~v~~l~~I~~la~ 190 (409)
T 3jzl_A 122 RKQGQGSLKDFHI---GYSSVPLLE--NGDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPSFTIEKIKEMIVFVK 190 (409)
T ss_dssp SSSSSSCTGGGTC---EEEECCCCT--TSCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHcCC---EEEEeCCCC--CCCcCHHHHHHhccCC------CeEEEEECCCCCCCCCcCccccHHHHHHHHH
Confidence 355677 888898875 5799999999998653 45788888 9999999999999999999
Q ss_pred H--hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhc-CCcccccCcc
Q 038818 258 R--YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALS-TNPEFLRNKA 332 (486)
Q Consensus 258 ~--~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~-~~~~y~~~~~ 332 (486)
+ +|+++|||++|+.+........ .++|.++.++||+++++. ..|+++. +++....... ...+++..
T Consensus 191 ~~~~~~~livD~a~~~~~~~~~p~~------~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~-- 261 (409)
T 3jzl_A 191 NINPEVIVFVDNCYGEFVEYQEPPE------VGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLTTPGIGR-- 261 (409)
T ss_dssp HHCTTCEEEEECTTCTTTSSCCSGG------GTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTGG--
T ss_pred hhCCCCEEEEeCCcccccccCCccc------cCCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhccccccc--
Confidence 9 9999999999986543221111 268999999999998753 2355555 4544433221 01111110
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee-----EEEEE
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA-----VVCFR 407 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-----~v~f~ 407 (486)
..+-... ..|..++ |.+....++++..+++.++++.|+++ ++++. +.... +++|.
T Consensus 262 --------------~~g~~~~--~~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~v~-p~~~~~~~~~i~~i~ 321 (409)
T 3jzl_A 262 --------------EAGASLY--SLLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEF-GVEAD-PVWDAPRTDLIQSVS 321 (409)
T ss_dssp --------------GCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSCCEEE
T ss_pred --------------cccccHH--HHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCCCCCccEEEEEE
Confidence 0110111 1233443 33556678888999999999999998 67874 32333 67777
Q ss_pred ee
Q 038818 408 VL 409 (486)
Q Consensus 408 ~~ 409 (486)
+.
T Consensus 322 l~ 323 (409)
T 3jzl_A 322 FH 323 (409)
T ss_dssp CS
T ss_pred eC
Confidence 75
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-17 Score=167.19 Aligned_cols=316 Identities=9% Similarity=-0.044 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC-eEEEecCCCchHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR-LVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~~ 190 (486)
.....++.++++++++...+ ..++++|||+||..|+.+++...... +.. ++ .+|......|-+...+..
T Consensus 117 ~~~~~~L~e~la~~~~~~~~-------~v~~~~sGseA~~~Alk~a~~~~~~~-g~~--g~~~ii~~~~~yhg~~~~~~~ 186 (457)
T 3tfu_A 117 HEPAARLAKLLVDITPAGLD-------TVFFSDSGSVSVEVAAKMALQYWRGR-GLP--GKRRLMTWRGGYHGDTFLAMS 186 (457)
T ss_dssp CHHHHHHHHHHHHHSSTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTCCCCSSHHHHT
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCcHHHHHHHHHHHHHHHHHhc-CCC--CCceEEEEcCCcCCccHHhhc
Confidence 34555778889999876544 68999999999999999988753221 111 23 344444455544333322
Q ss_pred HcC-C---------CCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec-CCccccccCC----chHHHHH
Q 038818 191 IAG-I---------DPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAITTVDP----LGPLCDI 255 (486)
Q Consensus 191 ~~G-~---------g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G~idp----l~~I~~i 255 (486)
..+ . ....+..+|....+....|+++|+++|++... .+.+|+++. .++++|.+-| +++|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~---~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l 263 (457)
T 3tfu_A 187 ICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG---ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDI 263 (457)
T ss_dssp TSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG---GEEEEEECSSEECTTTCEECCTHHHHHHHHH
T ss_pred ccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC---CEEEEEEeCCCcCCCCcccCCHHHHHHHHHH
Confidence 211 0 01134555554322234689999999986421 345677777 7888898866 9999999
Q ss_pred HHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcC-Ccc-cccCcc
Q 038818 256 AKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALST-NPE-FLRNKA 332 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~-~~~-y~~~~~ 332 (486)
|++||++|++|++|.++......+.....++ ..|.+++ .|.+++++ +.|.++.+++ .. +.+.. .+. +...
T Consensus 264 ~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-~pdiit~--sK~l~gG~~~lG~v~~~~~-i~-~~~~~~~~~~~~~~-- 336 (457)
T 3tfu_A 264 CRRYEVLLIFDEIATGFGRTGALFAADHAGV-SPDIMCV--GKALTGGYLSLAATLCTAD-VA-HTISAGAAGALMHG-- 336 (457)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH-HH-HHHHHSSSCSCCCC--
T ss_pred HHHcCCEEEEEcCccCCccccchhHhHhcCC-CceEEEE--ChhhhCCCcceEEEEEcHH-HH-HHhhccCCCceeEe--
Confidence 9999999999999976432111111111122 4677755 59888764 7888888754 22 22311 111 1100
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCCeeEEEEEee
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRNFAVVCFRVL 409 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~ 409 (486)
.+-....+.+.+++..+..-.-+++.++..++.+++++.|+++ |.+..+ .....++.+.+.
T Consensus 337 ---------------~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~ 400 (457)
T 3tfu_A 337 ---------------PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECD 400 (457)
T ss_dssp ---------------CTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEES
T ss_pred ---------------cCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEEC
Confidence 1112234444444443321011245677777888888888764 444433 223456666664
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
... + ..++.+.+.++|++ +.+. ..++|+++ ....|++||++++++|+++++++.
T Consensus 401 ~~~------------~--~~~~~~~l~~~Gv~-v~~~----~~~lRi~p-~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 401 RPV------------D--LAVATPAALDRGVW-LRPF----RNLVYAMP-PYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp SCC------------C--HHHHHHHHHHTTEE-CCCB----TTEEEECC-CTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred Ccc------------c--HHHHHHHHHHCCeE-EEec----CCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 321 1 34567777788874 3331 25799886 356688899999999999988764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=168.53 Aligned_cols=319 Identities=11% Similarity=-0.002 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.+.+++++|.+.+ ..++|+||++|+..++.+++... + ++.+|+.....|.+...+....
T Consensus 85 ~~~~~l~~~la~~~~~~~~-------~v~~~~gg~ea~~~a~~~~~~~~-------~-~~~vi~~~~~yhg~~~~~~~~~ 149 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLD-------RALLLSTGAESNEAAIRMAKLVT-------G-KYEIVGFAQSWHGMTGAAASAT 149 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCC-------EEEEESCHHHHHHHHHHHHHHHH-------T-CCEEEEETTCCCCSSHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCchHHHHHHHHHHHHHhh-------C-CCeEEEECCCcCCCChhHHhhc
Confidence 4555677888999887544 68999999999999998776421 0 2334444445565554444332
Q ss_pred CC--------CCCCeEEEecCCC--C--------CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----ch
Q 038818 193 GI--------DPKNFRAIKTTKS--S--------SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LG 250 (486)
Q Consensus 193 G~--------g~~~v~~v~~d~~--~--------~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~ 250 (486)
+. -...+..++++.. . .+.+|+++|+++|++. ....+.+|+++...+++|.+-| ++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~ 227 (433)
T 1zod_A 150 YSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMA 227 (433)
T ss_dssp CSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHH
T ss_pred CCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHH
Confidence 21 0124566665320 0 1135799999999753 1123455666655677897665 99
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+|+++|++||+++++|++|+++......+.....++ ..|.++ +.|+++.+.++|+++.+++ ... .+... .+...
T Consensus 228 ~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~ig~~~~~~~-~~~-~~~~~-~~~~~ 301 (433)
T 1zod_A 228 ALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILT--LSKTLGAGLPLAAIVTSAA-IEE-RAHEL-GYLFY 301 (433)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEE--ECHHHHTTSSCEEEEECHH-HHH-HHHHT-TCCCC
T ss_pred HHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCC-CCCEEE--ecccccCCCCeeEEEEhHH-HHH-hhccC-CCCCC
Confidence 999999999999999999986432111111011122 356655 4599987778899988753 322 22110 01100
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeE
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAV 403 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~ 403 (486)
.+-....+.+.+ +++.+..+ ++.++..++++++++.|++ .+.+... ++...+
T Consensus 302 -----------------~t~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~ 360 (433)
T 1zod_A 302 -----------------TTHVSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLL 360 (433)
T ss_dssp -----------------CTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTE
T ss_pred -----------------CCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEE
Confidence 000112333333 33332222 3456667777777777765 3444333 233455
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.+.+...... .........++.+.+.++|+++.....+.+..++|+++ +...++++|+++++.|+++++++
T Consensus 361 ~~i~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~-~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 361 LGVEIVKDRRT------KEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAP-PLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp EEEEEEEETTT------TEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCccc------cCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHHh
Confidence 66655431000 00001123467777778887543332222246899987 45778889999999999988765
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-17 Score=164.08 Aligned_cols=329 Identities=11% Similarity=0.058 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
......++.++++++++.+. ..++|+|||+||..|+.+++...... +.. .++.+|+.....|.....+..
T Consensus 89 ~~~~~~~la~~l~~~~~~~~--------~v~~~~ggseA~~~al~~~~~~~~~~-g~~-~~~~vi~~~~~yhg~~~~~~~ 158 (452)
T 3n5m_A 89 SHEPAIKLAEKLNEWLGGEY--------VIFFSNSGSEANETAFKIARQYYAQK-GEP-HRYKFMSRYRGYHGNTMATMA 158 (452)
T ss_dssp EEHHHHHHHHHHHHHHTSCE--------EEEEESSHHHHHHHHHHHHHHHHHTT-TCT-TCCEEEEETTCCCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCc--------eEEEeCchHHHHHHHHHHHHHHHHhc-CCC-CCCEEEEECCCcCCCCHHHHh
Confidence 35666778899999987543 37999999999999999988542211 100 033444445555544433333
Q ss_pred HcCCC---------CCCeEEEecCCCCC----------cccCHHHHHHHHHHHHHCCCccEEEEeecC-CccccccCC--
Q 038818 191 IAGID---------PKNFRAIKTTKSSS----------FTLTPESLQAAIDLDIQAGLIPLFLCATVG-TTAITTVDP-- 248 (486)
Q Consensus 191 ~~G~g---------~~~v~~v~~d~~~~----------~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~G~idp-- 248 (486)
..|.. ...+..++....-. +..++++|+++|++. ....+.+|+++.. ++ +|.+-|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~ 235 (452)
T 3n5m_A 159 ATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQ 235 (452)
T ss_dssp SCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCT
T ss_pred cCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCH
Confidence 33321 11345555421000 111289999999732 1123456777777 78 998876
Q ss_pred --chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcC--
Q 038818 249 --LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALST-- 323 (486)
Q Consensus 249 --l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~-- 323 (486)
+++|+++|++||++|++|++|.++......+.....++ ..|.+++ .|.++.+ .+.|+++.+++ . .+.+..
T Consensus 236 ~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t~--sK~l~~G~~~ig~~~~~~~-i-~~~~~~~~ 310 (452)
T 3n5m_A 236 DYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV-KPDIITM--AKGITSAYLPLSATAVKRE-I-YEAFKGKG 310 (452)
T ss_dssp THHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH-H-HGGGCSSS
T ss_pred HHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC-CCCEEee--cccccCCCcceEEEEECHH-H-HHHHhhcc
Confidence 99999999999999999999976432111111111122 3666665 5888866 67888887543 2 223321
Q ss_pred -CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH----hCCCCeEEecC
Q 038818 324 -NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELV----GGDNRFEIVAP 398 (486)
Q Consensus 324 -~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L----~~~~~~~~~~~ 398 (486)
...++. ..+-....+.+.+++..+..-.-+++.++..++.+++++.| .++|.+..+ +
T Consensus 311 ~~~~~~~-----------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~ 372 (452)
T 3n5m_A 311 EYEFFRH-----------------INTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDI-R 372 (452)
T ss_dssp TTCSCCC-----------------CCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-E
T ss_pred CCCCccc-----------------cCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-E
Confidence 011110 01112234444444443321111234455555555555555 445555443 2
Q ss_pred CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee--ECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 399 RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM--VAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 399 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
+...++.+.+...... ..........++.+.+.++|+++..... .....++|+++ +...++++|+++++.|+
T Consensus 373 ~~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~ 446 (452)
T 3n5m_A 373 GKGLLVGIELVNDKET-----KEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAP-PLVISSEEIAFVIGTLK 446 (452)
T ss_dssp ESSSCEEEEEEEETTT-----TEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECC-CTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEEEEecCCcc-----cCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 2334445544321100 0000022345677788888975443321 11257899987 35678889999999999
Q ss_pred HHHHH
Q 038818 477 EKLDG 481 (486)
Q Consensus 477 ~~~~~ 481 (486)
+++++
T Consensus 447 ~~l~~ 451 (452)
T 3n5m_A 447 TAMER 451 (452)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88754
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-16 Score=163.20 Aligned_cols=331 Identities=11% Similarity=0.040 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
......++.++++++++...+ ..++++||++||..|+.+++.....+ |..+ +..+|+.....|.+...+..
T Consensus 95 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~sGseA~~~Aik~a~~~~~~~-g~~~-~~~vi~~~~~yHg~~~~~~~ 165 (476)
T 3i5t_A 95 ATSPAARLAEKIATLTPGDLN-------RIFFTTGGSTAVDSALRFSEFYNNVL-GRPQ-KKRIIVRYDGYHGSTALTAA 165 (476)
T ss_dssp BCHHHHHHHHHHHTTSSTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcC-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEEcCCcCcCChhhcc
Confidence 356667788999999875443 68999999999999999998764322 2111 23445455556655444444
Q ss_pred HcCCC---------CCCeEEEecCCC-CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 191 IAGID---------PKNFRAIKTTKS-SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 191 ~~G~g---------~~~v~~v~~d~~-~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
..|.. ...+..++.... ..+..| +++|+++|++.. ...+.+|++....++.|.+-|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~ 243 (476)
T 3i5t_A 166 CTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGY 243 (476)
T ss_dssp TCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTH
T ss_pred ccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHH
Confidence 33321 123455553210 001222 789999887531 123567888888888887665
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhh-hcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCc-
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF-IDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNP- 325 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~-~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~- 325 (486)
+++|+++|++||++|++|++|.++......+... ..++ ..|.++++ |.+++. .+.|.++.+++ .. +.+....
T Consensus 244 L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~~-i~-~~~~~~~~ 318 (476)
T 3i5t_A 244 HARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGV-VPDIITFA--KGVTSGYVPLGGLAISEA-VL-ARISGENA 318 (476)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCC-CCSEEEEC--GGGGTTSSCCEEEEECHH-HH-HTTSGGGC
T ss_pred HHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCC-Ccchhhhh--hhhcCCCcCeEEEEECHH-HH-HHHhcCCc
Confidence 9999999999999999999998753222111111 1122 46777764 998876 67888887543 32 2222110
Q ss_pred ---ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCC
Q 038818 326 ---EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPR 399 (486)
Q Consensus 326 ---~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~ 399 (486)
.+.. ..+-....+++.+++..+..-.-+++.++..++.+++++.|+++ |.+..+ .+
T Consensus 319 ~~~~~~~-----------------~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-~~ 380 (476)
T 3i5t_A 319 KGSWFTN-----------------GYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAET-RS 380 (476)
T ss_dssp TTCEECC-----------------CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEE-EE
T ss_pred ccccccc-----------------cCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-Ee
Confidence 0110 01112234444444444321111356677778888888888754 334333 22
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
...++.+.+....... ...........++.+.+.++|+++.. . + .++|++. ....++++|+++++.|++++
T Consensus 381 ~G~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gv~v~~-~---g-~~iRi~p-~l~~t~e~i~~~l~~l~~~l 451 (476)
T 3i5t_A 381 VGLVGCVQCLLDPTRA---DGTAEDKAFTLKIDERCFELGLIVRP-L---G-DLCVISP-PLIISRAQIDEMVAIMRQAI 451 (476)
T ss_dssp ETTEEEEEECCC--------CCHHHHHHHHHHHHHHHHTTEECEE-E---T-TEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEecCcccc---ccccchhHHHHHHHHHHHHCCCEEEe-c---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 3345566554321000 00000112355778888888975433 2 3 6899986 35778899999999999998
Q ss_pred HHHhh
Q 038818 480 DGILA 484 (486)
Q Consensus 480 ~~l~~ 484 (486)
+++.+
T Consensus 452 ~~~~~ 456 (476)
T 3i5t_A 452 TEVSA 456 (476)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=168.30 Aligned_cols=351 Identities=12% Similarity=0.049 Sum_probs=203.6
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCC---
Q 038818 53 IETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLP--- 129 (486)
Q Consensus 53 ~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~--- 129 (486)
.-.+.+.+++.-.+...+.....|+++...+. +.+.+..........|...++..++++.+.+|+. |..
T Consensus 28 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~-----v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~---~~~~~~ 99 (409)
T 4eu1_A 28 ILGLGQDFRMDPAKRKVNLSIGVYRDDADQPF-----VLECVKQATLGTNMDYAPVTGIASFVEEAQKLCF---GPTCAA 99 (409)
T ss_dssp HHHHHHHHHHCCCSSCEECCCSSCCCTTSCCC-----CCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHH---CSSCHH
T ss_pred HHHHHHHHhhCCCcCceeeeeeEEECCCCCEe-----ecHHHHhcCccccccCCCCCCcHHHHHHHHHHHc---CCCchh
Confidence 34555555544333333333333333322221 2233333333334455555556788887777763 433
Q ss_pred --CCCccCCCcce--EEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecC
Q 038818 130 --KSFLFSGTGGG--VIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTT 205 (486)
Q Consensus 130 --~~~~~~~~~~~--~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d 205 (486)
++ .. ..|.||++++..+...++.. ..+++.|+++..+|.++...++..|. +++.+|++
T Consensus 100 ~~~~-------~i~~~~~~~g~ga~~~~~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~ 161 (409)
T 4eu1_A 100 LRDG-------RIASCQTLGGTGALRIGGDLLNRF--------VANCNRIYGPDVGYPNHESIFAKAGM---ELTPYSYY 161 (409)
T ss_dssp HHTT-------CEEEEEESHHHHHHHHHHHHGGGT--------SSSCCEEEEESSCCTHHHHHHHHTTC---EEEEECCE
T ss_pred hccC-------ceeeeecccchHHHHHHHHHHHHh--------cCCCCEEEEeCCCcHhHHHHHHHcCC---eEEEEEee
Confidence 22 33 34888898886554433221 01557888999999999999999999 99999984
Q ss_pred CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchhccCc--cch
Q 038818 206 KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICP--EFR 280 (486)
Q Consensus 206 ~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~--~~~ 280 (486)
.++++.+|+++|++++++.. ..+.+++.+.++|++|.+-+ +++|+++|++||+++++|++|+.+..... ...
T Consensus 162 ~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~ 238 (409)
T 4eu1_A 162 DPATKGLNLAGMLECLDKAP---EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAF 238 (409)
T ss_dssp ETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH
T ss_pred cCcCCcCcHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchH
Confidence 33467999999999997521 12456777889999999976 55699999999999999999977543221 011
Q ss_pred h--hhcCCCCCC-ceeeccccccCCC-CcceEE--EeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc
Q 038818 281 H--FIDGIEGAD-SFSLNAHKWFFTT-LDCCCL--WVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA 354 (486)
Q Consensus 281 ~--~~~~~~~aD-si~~~~hK~l~~p-~~~g~~--~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~ 354 (486)
. .+.+. ..+ .+..+++|.++.| ..+|++ ++.++............+.... .. ....
T Consensus 239 ~~~~~~~~-~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~--------------~~---~~~~ 300 (409)
T 4eu1_A 239 VPRHLVDM-VPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPM--------------YN---NPPL 300 (409)
T ss_dssp HHHHHHTT-SSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHH--------------HS---SCCH
T ss_pred HHHHHHhh-CCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhh--------------cC---CCCh
Confidence 1 11111 233 4456788999844 457876 6666552111110000000000 00 0122
Q ss_pred hHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHHhCCC--C-eEEecCCCeeEEEEEeecCCCCCCCCCCccc
Q 038818 355 LKLWLVLRSFG--------VANLRNFLRSHVRMAQLFQELVGGDN--R-FEIVAPRNFAVVCFRVLPSASGLGDGKANEG 423 (486)
Q Consensus 355 l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~~--~-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~ 423 (486)
+..+++...+. .+.++++.++..++++++.+.|++++ + +++. ++..+++.|. +..
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~--~~~----------- 366 (409)
T 4eu1_A 301 YGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHI-ERQVGMMAYT--GLT----------- 366 (409)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHSCSSEEEC--CCC-----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee-cCCceEEEEe--CCC-----------
Confidence 33333333332 23466778888899999999998862 1 5443 3444555551 110
Q ss_pred hHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 424 ANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 424 ~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.+ +..++. +.|+. +.+. .|++++. . ++++|++++++|++++
T Consensus 367 -~~----~~~~ll~~~gv~-v~p~-------~Ri~~~~-~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 367 -RE----QVELLRSEYHIY-MTLN-------GRAAVSG-L-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp -HH----HHHHHHHHHCEE-CCTT-------CEEEGGG-C-CTTTHHHHHHHHHHHH
T ss_pred -HH----HHHHHHHcCCEE-EcCC-------CEEEEEe-c-CHhhHHHHHHHHHHHh
Confidence 12 233333 45764 4332 4888853 3 4457999999998865
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-17 Score=165.18 Aligned_cols=328 Identities=12% Similarity=0.040 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.++++++++.+.+ ..++++||++||..|+.+++...... |..+ ++.+|......|-....+...
T Consensus 98 ~~~~~~lae~l~~~~~~~~~-------~v~~~~sGseA~~~aik~a~~~~~~~-g~~~-~~~ii~~~~~yHg~t~~~~~~ 168 (472)
T 3hmu_A 98 HVPAIALAQKLAELAPGDLN-------HVFFAGGGSEANDTNIRMVRTYWQNK-GQPE-KTVIISRKNAYHGSTVASSAL 168 (472)
T ss_dssp CHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEEcCcCCCccHHhhhc
Confidence 45556677888888865443 68999999999999999998753221 1111 234444455556443333333
Q ss_pred cCC--------CCCCeEEEecCC--C-CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 192 AGI--------DPKNFRAIKTTK--S-SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G~--------g~~~v~~v~~d~--~-~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.|. ....+..+|... . .++ +| +++|+++|++.. ...+.+|++....++.|.+-|
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~ 245 (472)
T 3hmu_A 169 GGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSY 245 (472)
T ss_dssp SCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTH
T ss_pred cCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHH
Confidence 221 112456666431 0 011 34 788998887531 123567777777888888877
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|+++|++||++|++|++|.++......+.....++ ..|.++++ |.+++. .+.|.++.+++ .. +.+.. ..+
T Consensus 246 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~-i~-~~~~~-~~~ 319 (472)
T 3hmu_A 246 WPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDE-VA-HVIGK-DEF 319 (472)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH-HH-HHHTT-SCB
T ss_pred HHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC-CCceeeec--hhhhcCCcceEEEEECHH-HH-Hhccc-CCc
Confidence 99999999999999999999987532221111111133 46777765 988876 47888888644 32 23311 111
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHHHhCC---CCeEEecCCCeeE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHV-RMAQLFQELVGGD---NRFEIVAPRNFAV 403 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~-~~a~~l~~~L~~~---~~~~~~~~~~~~~ 403 (486)
.. ..+-....+++.+++..+..-.-+++.++.. ++.+++++.|+++ |.+..+ .+...+
T Consensus 320 ~~-----------------~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~ 381 (472)
T 3hmu_A 320 NH-----------------GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMM 381 (472)
T ss_dssp CC-----------------CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTE
T ss_pred cc-----------------cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCce
Confidence 10 0111223444444444432111134556666 6777777777554 444433 233446
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+.|.+....... .+. ..........+.+.+.++|+++... + .++|++. ....++++|++++++|+++++++.
T Consensus 382 ~~i~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 382 ASIALTPNKASR-AKF-ASEPGTIGYICRERCFANNLIMRHV----G-DRMIISP-PLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp EEEEECSCGGGT-CCB-SSCTTHHHHHHHHHHHHTTBCCEEE----T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccc-ccc-cchhHHHHHHHHHHHHHCCcEEEec----C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 666664321000 000 0000233556778888889854332 2 6899986 457788899999999999887654
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=162.51 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.++++++++.+.+ ..++|+||++||..|+.+++..... .|..+ +..+|......|.+...+...
T Consensus 94 ~~~~~~la~~l~~~~~~~~~-------~v~~~~gGseA~~~al~~~~~~~~~-~g~~~-~~~vi~~~~~yhg~~~~~~~~ 164 (460)
T 3gju_A 94 TEASITLAKMIIDRAPKGMS-------RVYFGLSGSDANETNIKLIWYYNNV-LGRPE-KKKIISRWRGYHGSGVMTGSL 164 (460)
T ss_dssp CHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHH-TTCTT-CCEEEEETTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCcC-------EEEEeCchHHHHHHHHHHHHHHHHh-cCCCC-CCEEEEECCCcCCCCHHHhhc
Confidence 45666778889998765443 6899999999999999998864321 11111 233444444555554444444
Q ss_pred cCC---------CCCCeEEEecCCC---CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---
Q 038818 192 AGI---------DPKNFRAIKTTKS---SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP--- 248 (486)
Q Consensus 192 ~G~---------g~~~v~~v~~d~~---~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp--- 248 (486)
.|. ....+..+|.... .+..++ +++|+++|++.. ...+.+|+++...+++|.+-|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~ 242 (460)
T 3gju_A 165 TGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAG 242 (460)
T ss_dssp CCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTT
T ss_pred cCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHH
Confidence 332 1124566664320 011223 688999887521 123557777777777888666
Q ss_pred -chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC--
Q 038818 249 -LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN-- 324 (486)
Q Consensus 249 -l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~-- 324 (486)
+++|+++|++||++|++|++|.++......+.....++ ..|.++++ |.+++. .+.|.++.+++ .. +.+...
T Consensus 243 ~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~l~gG~~~lg~v~~~~~-i~-~~~~~~~~ 317 (460)
T 3gju_A 243 YWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGI-KPDLITIA--KGLTSAYAPLSGVIVADR-VW-QVLVQGSD 317 (460)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH-HH-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeeee--hhhcCCCCCeEEEEECHH-HH-HHHhcccc
Confidence 99999999999999999999986532211111111122 46777654 998876 47888887654 22 222100
Q ss_pred -cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCC
Q 038818 325 -PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPR 399 (486)
Q Consensus 325 -~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 399 (486)
...+.. ..+-....+.+.+++..+ ..+. +++..+....+.+.|.+.+++++.+..+ .+
T Consensus 318 ~~~~~~~----------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~ 380 (460)
T 3gju_A 318 KLGSLGH----------------GWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV-RG 380 (460)
T ss_dssp HHCSCSC----------------CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EE
T ss_pred ccccccc----------------CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-ee
Confidence 000000 001112334444444433 2222 2333333334445555555666655544 23
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
...++.+.+....... ...........++.+.+.++|+++.... +..++|+++ ....++++|+++++.|++++
T Consensus 381 ~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l 453 (460)
T 3gju_A 381 DGMLAAVEFVADKDDR---VFFDASQKIGPQVATALAASGVIGRAMP---QGDILGFAP-PLCLTREQADIVVSKTADAV 453 (460)
T ss_dssp ETTEEEEEECSBTTTT---BCCCGGGCHHHHHHHHHHHTTEECEECS---SSCEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEccCcccc---ccccchHHHHHHHHHHHHHCCeEEecCC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 3445666654321000 0000012234567788888897543322 346899987 35678889999999999999
Q ss_pred HHHhh
Q 038818 480 DGILA 484 (486)
Q Consensus 480 ~~l~~ 484 (486)
+++.+
T Consensus 454 ~~~~~ 458 (460)
T 3gju_A 454 KSVFA 458 (460)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 87653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-16 Score=160.21 Aligned_cols=331 Identities=11% Similarity=0.044 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC-chHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT-HSALQKAA 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~-H~s~~~a~ 189 (486)
......++.++++++++...+ ..++|+|||+|+..|+.+++...... |.. .+..|++...+ |.+...+.
T Consensus 85 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~sGseA~~~al~~~~~~~~~~-G~~--~~~~vi~~~~~yhg~~~~~~ 154 (448)
T 3dod_A 85 TNVPATQLAETLIDISPKKLT-------RVFYSDSGAEAMEIALKMAFQYWKNI-GKP--EKQKFIAMKNGYHGDTIGAV 154 (448)
T ss_dssp EEHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEEC-----------
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCchHHHHHHHHHHHHHHHHhh-CCC--CCCEEEEECCCCCCccHHHH
Confidence 345666788999999865433 68999999999999999998753221 100 13455555444 43333333
Q ss_pred HHcCCC---------CCCeEEEecCCCCCccc-----------CHHHHHHHHHHHHHCCCccEEEEeecCC-ccccccCC
Q 038818 190 QIAGID---------PKNFRAIKTTKSSSFTL-----------TPESLQAAIDLDIQAGLIPLFLCATVGT-TAITTVDP 248 (486)
Q Consensus 190 ~~~G~g---------~~~v~~v~~d~~~~~~~-----------d~~~L~~~l~~~~~~g~~p~~vv~~~gt-t~~G~idp 248 (486)
...|.. ...+..+|.+. .++. |+++|+++|+... ..+.+|+++... ++.|.+-|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~~G~~~~ 229 (448)
T 3dod_A 155 SVGSIELFHHVYGPLMFESYKAPIPY--VYRSESGDPDECRDQCLRELAQLLEEHH---EEIAALSIESMVQGASGMIVM 229 (448)
T ss_dssp ------------------CEEECCCC--CTTSSSCCHHHHHHHHHHHHHHHHHHHG---GGEEEEEEESSEESTTTCEEC
T ss_pred HhcCCccccccccCCCCCceEeCCCc--cccCCccchhhhhHHHHHHHHHHHHhCC---CCEEEEEEeCcccCCCCeecC
Confidence 332211 11345555532 2332 5899999998422 124566666666 77887765
Q ss_pred ----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC-cceEEEeeCchHHHHHhcC
Q 038818 249 ----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL-DCCCLWVKNPNALIKALST 323 (486)
Q Consensus 249 ----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~-~~g~~~~~~~~~~~~~~~~ 323 (486)
+++|+++|++||++|++|++|.++......+.....++ ..|.+++ .|.+++++ +.|+++.+++ . .+.+..
T Consensus 230 ~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~-~~di~t~--sK~l~~G~~~ig~v~~~~~-~-~~~~~~ 304 (448)
T 3dod_A 230 PEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENV-QPDLMAA--GKGITGGYLPIAVTFATED-I-YKAFYD 304 (448)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH-H-HHTTCS
T ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCC-CCCEEEe--cccccCCcCceEEEEECHH-H-HHHhhh
Confidence 99999999999999999999986432211111111122 3566665 49998774 7888887654 2 222321
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEecCCC
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVG---GDNRFEIVAPRN 400 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~---~~~~~~~~~~~~ 400 (486)
. +..... .....+-....+.+.+++..+..-.-+++.++..++.+++++.|. .+|.+..+ .+.
T Consensus 305 ~--~~~~~~-----------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ 370 (448)
T 3dod_A 305 D--YENLKT-----------FFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI-RQL 370 (448)
T ss_dssp C--GGGCCC-----------CCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEE
T ss_pred c--cccCCc-----------ccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE-Eee
Confidence 0 000000 000011122334444444433110012344555555555555554 44444332 223
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
..++.+.+....... . ..........++.+.+.++|+++ .+. + .++|+++ +...++++|+++++.|+++++
T Consensus 371 g~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~Gv~~-~~~---~-~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 441 (448)
T 3dod_A 371 GFMCGAELVRSKETK-E--PYPADRRIGYKVSLKMRELGMLT-RPL---G-DVIAFLP-PLASTAEELSEMVAIMKQAIH 441 (448)
T ss_dssp TTEEEEEECSBTTTT-B--CCCGGGCHHHHHHHHHHHTTEEC-CEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEccCcccc-c--ccchhhHHHHHHHHHHHHCCcEE-ecc---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 345566554321000 0 00000011346777788888753 332 2 6899987 467788899999999999998
Q ss_pred HHhh
Q 038818 481 GILA 484 (486)
Q Consensus 481 ~l~~ 484 (486)
++..
T Consensus 442 ~~~~ 445 (448)
T 3dod_A 442 EVTS 445 (448)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7753
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-16 Score=160.86 Aligned_cols=329 Identities=12% Similarity=0.050 Sum_probs=185.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
......++.++++++++.+.+ ..++++||++||..|+.+++...... |..+ ++.+|......|....-+..
T Consensus 92 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~ggseA~~~al~~~~~~~~~~-g~~~-~~~vi~~~~~yhg~~~~~~~ 162 (459)
T 4a6r_A 92 THPAVVELSSLLAEVTPAGFD-------RVFYTNSGSESVDTMIRMVRRYWDVQ-GKPE-KKTLIGRWNGYHGSTIGGAS 162 (459)
T ss_dssp CCHHHHHHHHHHHHHSCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEECCCcCCccHHHHh
Confidence 345667788999999876544 68999999999999999998753221 1110 23344444445544433333
Q ss_pred HcCCC---------CCCeEEEecCC--C-CCcccC--------HHHHHHHHHHHHHCCCccEEEEeecCCccccccCC--
Q 038818 191 IAGID---------PKNFRAIKTTK--S-SSFTLT--------PESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP-- 248 (486)
Q Consensus 191 ~~G~g---------~~~v~~v~~d~--~-~~~~~d--------~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp-- 248 (486)
..|.. ...+..++... . .++ +| +++|+++|++.. ...+.+|+++...++.|.+.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~ 239 (459)
T 4a6r_A 163 LGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPA 239 (459)
T ss_dssp HSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCT
T ss_pred hcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCH
Confidence 33321 11345555321 0 112 45 788999887531 112456777777777788877
Q ss_pred --chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCc
Q 038818 249 --LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNP 325 (486)
Q Consensus 249 --l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~ 325 (486)
+++|+++|++||++|++|++|.++......+.....++ ..|.++++ |.++++ .+.|.++.+++ ... .+....
T Consensus 240 ~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~pdi~t~s--K~l~gg~~~lg~v~~~~~-i~~-~~~~~~ 314 (459)
T 4a6r_A 240 TYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGF-QPDLFTAA--KGLSSGYLPIGAVFVGKR-VAE-GLIAGG 314 (459)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEEC--GGGGTTSSCCEEEEECHH-HHH-HHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeehh--hhhcCCCCCccceeeCHH-HHH-HhhcCC
Confidence 99999999999999999999976432211111111122 46777764 988766 57888887544 322 221000
Q ss_pred ccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHH-HHHHHHH----HHHhCCCCeEEecCCC
Q 038818 326 EFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHV-RMAQLFQ----ELVGGDNRFEIVAPRN 400 (486)
Q Consensus 326 ~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~-~~a~~l~----~~L~~~~~~~~~~~~~ 400 (486)
.+... .+-....+.+.+++..+..-.-+++.++.. ++.++++ +.|.+++.+..+ ++.
T Consensus 315 ~~~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~ 376 (459)
T 4a6r_A 315 DFNHG-----------------FTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDV-RGV 376 (459)
T ss_dssp TTHHH-----------------HHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE-EEE
T ss_pred CcccC-----------------CCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEE
Confidence 00000 000112344444444332100122334444 4444444 444556655544 233
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
..++.+.+....... . ..........++.+.+.++|+++... + .++|+++ +...++++++++++.|+++++
T Consensus 377 g~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 447 (459)
T 4a6r_A 377 GMVQAFTLVKNKAKR-E--LFPDFGEIGTLCRDIFFRNNLIMRAC----G-DHIVSAP-PLVMTRAEVDEMLAVAERCLE 447 (459)
T ss_dssp TTEEEEEECSBTTTT-B--CCSSTTHHHHHHHHHHHHTTEECEEE----T-TEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCcccc-c--cccchHHHHHHHHHHHHHCCeEEecC----C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 445666654321000 0 00001233556778888889754332 2 6899987 457788899999999999887
Q ss_pred HHh
Q 038818 481 GIL 483 (486)
Q Consensus 481 ~l~ 483 (486)
++.
T Consensus 448 ~~~ 450 (459)
T 4a6r_A 448 EFE 450 (459)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=166.26 Aligned_cols=235 Identities=10% Similarity=0.045 Sum_probs=158.5
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEE---cCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC-CCchHHH-----
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVI---QGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD-QTHSALQ----- 186 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~---t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~----- 186 (486)
.++.+.+++++|.+. .++ ++|||+||..++.+... +++.|+++. ..|....
T Consensus 77 ~~Le~~lA~l~g~e~---------alv~p~~~sGt~A~~~al~all~-----------pGD~Vl~~~~~~y~~~~~~~g~ 136 (427)
T 3hvy_A 77 DSLDRVYANIFNTES---------AFVRPHFVNGTHAIGAALFGNLR-----------PNDTMMSICGMPYDTLHDIIGM 136 (427)
T ss_dssp HHHHHHHHHHHTCSE---------EEEETTCCSHHHHHHHHHHHTCC-----------TTCEEEECSSSCCGGGHHHHTC
T ss_pred HHHHHHHHHHhCCCc---------eEEeCCCCcHHHHHHHHHHHhcC-----------CCCEEEEeCCCCchhHHHHhcc
Confidence 344467899998764 356 78999999877765433 677788887 6666544
Q ss_pred ------HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec----CCccccccCCchHHHHHH
Q 038818 187 ------KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV----GTTAITTVDPLGPLCDIA 256 (486)
Q Consensus 187 ------~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~----gtt~~G~idpl~~I~~i~ 256 (486)
..++..|+ +++.+|.+ ++.+|+++|++++++. ..+.+|+++. +++++|.+.|+++|+++|
T Consensus 137 ~~~~~~~~l~~~G~---~~~~v~~~---~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia 206 (427)
T 3hvy_A 137 DDSKKVGSLREYGV---KYKMVDLK---DGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSI 206 (427)
T ss_dssp CTTCCSCCTGGGTC---EEEECCCB---TTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHH
T ss_pred ccchhhhHHHHcCC---EEEEecCC---CCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHHH
Confidence 33455687 88888873 5699999999999741 1245788888 899999999999999999
Q ss_pred HH--hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC--CcceEEEeeCchHHHHHhcC-CcccccCc
Q 038818 257 KR--YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT--LDCCCLWVKNPNALIKALST-NPEFLRNK 331 (486)
Q Consensus 257 ~~--~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p--~~~g~~~~~~~~~~~~~~~~-~~~y~~~~ 331 (486)
++ +|++++||+||+.+........ .++|.++.++||+++++ ...|+++.+ ++...+.... ..+.+.
T Consensus 207 ~~~~~g~~livD~a~~~~~~~~~p~~------~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g-- 277 (427)
T 3hvy_A 207 REVNENVIVFVDNCYGEFVEEKEPTD------VGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIG-- 277 (427)
T ss_dssp HHHCSSSEEEEECTTCTTTSSSCGGG------GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTG--
T ss_pred HHhCCCCEEEEECCccccccCCCCcc------cCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcc--
Confidence 99 8999999999977653221111 16899999999999873 223666654 4443322110 111110
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee-----EEEE
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA-----VVCF 406 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-----~v~f 406 (486)
...+-.+. ..|..++ |......++++..+++.++++.|+++ ++++. +.... +++|
T Consensus 278 --------------~~~~~~~~--~a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~~~~~li~~~ 337 (427)
T 3hvy_A 278 --------------GECGSTFG--VMRSLYE--GLFMAPHVTIEAVKGAVFCARIMELA-GFDVL-PKYNDKRTDIIQAI 337 (427)
T ss_dssp --------------GGCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSEEEE
T ss_pred --------------cccCCCHH--HHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCCceEEEEE
Confidence 01111111 1344444 33555678889999999999999998 57774 32333 7777
Q ss_pred Eee
Q 038818 407 RVL 409 (486)
Q Consensus 407 ~~~ 409 (486)
.+.
T Consensus 338 ~l~ 340 (427)
T 3hvy_A 338 KFN 340 (427)
T ss_dssp ECS
T ss_pred eCC
Confidence 775
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-16 Score=160.25 Aligned_cols=342 Identities=14% Similarity=0.089 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 86 IAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
.|. +.+.+...+.... .+.......+...++.++++++++.+.. ...+||+|||+||..|+.+++...
T Consensus 79 ~p~-v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~------~~v~~~~sGseA~~~Alk~a~~~~---- 146 (451)
T 3oks_A 79 APK-VVEAVRSQVGDFT-HTCFMVTPYEGYVAVCEQLNRLTPVRGD------KRSALFNSGSEAVENAVKIARSHT---- 146 (451)
T ss_dssp CHH-HHHHHHHHHTTCS-CCTTTTSCCHHHHHHHHHHHHHSSCCSS------EEEEEESSHHHHHHHHHHHHHHHH----
T ss_pred CHH-HHHHHHHHHHhcc-cccCCccCCHHHHHHHHHHHHhCCcCCC------CEEEEeCcHHHHHHHHHHHHHHhc----
Confidence 444 3444444443322 2222223345666788999999864321 268999999999999999888642
Q ss_pred cccCCC-CeEEEecCCCchHHHHHHHHcCCC----------CCCeEEEecCCC--------CC---cccCHHHHHHHHHH
Q 038818 166 GRENIS-RLVVYGSDQTHSALQKAAQIAGID----------PKNFRAIKTTKS--------SS---FTLTPESLQAAIDL 223 (486)
Q Consensus 166 ~~~~~~-~~~v~~s~~~H~s~~~a~~~~G~g----------~~~v~~v~~d~~--------~~---~~~d~~~L~~~l~~ 223 (486)
+ +.+|......|-...-+....|-. ...+..+|.... +. ..-+++.++++|++
T Consensus 147 -----g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 221 (451)
T 3oks_A 147 -----HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDK 221 (451)
T ss_dssp -----CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHh
Confidence 3 334444445554444443332210 114667776410 00 01235555566654
Q ss_pred HHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccc
Q 038818 224 DIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKW 299 (486)
Q Consensus 224 ~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~ 299 (486)
.. ....+.+|+++...+..|.+-| +++|+++|++||++|++|++|.++......+.....++ ..|.+++ .|.
T Consensus 222 ~~-~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi~t~--sK~ 297 (451)
T 3oks_A 222 QI-GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-DPDLIVT--AKG 297 (451)
T ss_dssp HT-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGG
T ss_pred hc-CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-CCCeeee--hhh
Confidence 32 1123556666666666677766 99999999999999999999976432211111111122 4566655 599
Q ss_pred cCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHH
Q 038818 300 FFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRM 379 (486)
Q Consensus 300 l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~ 379 (486)
++.+...|.++.+++ .. +.+.. .. ...+-....+.+.+++..+..-.-+++.++..++
T Consensus 298 l~~G~~iG~v~~~~~-~~-~~~~~---~~-----------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 355 (451)
T 3oks_A 298 IAGGLPLSAVTGRAE-IM-DSPHV---SG-----------------LGGTYGGNPIACAAALATIETIESEGLVARAQQI 355 (451)
T ss_dssp GGTTSSCEEEEEEHH-HH-TCSCT---TS-----------------BCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhCCcceEEEEECHH-HH-hhhcC---CC-----------------cCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 988778898877543 22 11110 00 0011122344444444443210012345555555
Q ss_pred HHHHHHHHh----CCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEE
Q 038818 380 AQLFQELVG----GDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIR 455 (486)
Q Consensus 380 a~~l~~~L~----~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR 455 (486)
.+++++.|. +++.+..+ .+...++.+.+..... .........++.+.+.++|+++..... ...++|
T Consensus 356 ~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iR 425 (451)
T 3oks_A 356 EKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKAGT-------TEPDADLTKALCAGAHAAGVIVLSCGT--YGNVVR 425 (451)
T ss_dssp HHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEBSTTS-------CCBCHHHHHHHHHHHHHTTEECEEECT--TSCEEE
T ss_pred HHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecCcc-------CCCCHHHHHHHHHHHHhCCcEEecCCC--CCCEEE
Confidence 666655554 45555433 2233466666543110 000134456788888889976444322 135799
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 456 FAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 456 ~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+++ +...++++|+++++.|++++++
T Consensus 426 i~~-~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 426 FLP-PLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp ECC-CTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEC-CCCCCHHHHHHHHHHHHHHHhh
Confidence 987 4567888999999999988753
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-16 Score=159.00 Aligned_cols=325 Identities=12% Similarity=0.031 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
..+...++.++++++++.+.. ...+||+|||+||..|+.+++... + ++.+|......|-....+..
T Consensus 105 ~~~~~~~la~~l~~~~~~~~~------~~v~~~~sGseA~~~alk~a~~~~-------g-~~~ii~~~~~yhg~~~~~~~ 170 (453)
T 4ffc_A 105 PYEQYVQVAELLNALTPGDHD------KRTALFNSGAEAVENAIKVARLAT-------G-RPAVVAFDNAYHGRTNLTMA 170 (453)
T ss_dssp CCHHHHHHHHHHHHHSSCSSC------EEEEEESSHHHHHHHHHHHHHHHH-------C-CCEEEEETTCCCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCC------cEEEEeCcHHHHHHHHHHHHHHhc-------C-CCEEEEEcCccCCcchHHHh
Confidence 355666788999999875421 268999999999999999887642 0 23444445555544444444
Q ss_pred HcCCC----------CCCeEEEecCCC--CCcccC-HHHHHHHHHHHHH--CCCccEEEEeecCCccccccCC----chH
Q 038818 191 IAGID----------PKNFRAIKTTKS--SSFTLT-PESLQAAIDLDIQ--AGLIPLFLCATVGTTAITTVDP----LGP 251 (486)
Q Consensus 191 ~~G~g----------~~~v~~v~~d~~--~~~~~d-~~~L~~~l~~~~~--~g~~p~~vv~~~gtt~~G~idp----l~~ 251 (486)
..|.. ...+..+|+... +.+.++ .+.++..++.-.+ ....+.+|+++...+..|.+-| +++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~ 250 (453)
T 4ffc_A 171 LTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLAT 250 (453)
T ss_dssp HCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred hcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHH
Confidence 43321 114666776410 011222 2333322221111 1123455666655555667755 999
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCc
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNK 331 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~ 331 (486)
|+++|++||++|++|++|.++......+.....++ ..|.+++ .|.++.....|.++.+++ .. +.+.. ...
T Consensus 251 l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t~--sK~~~~G~~~G~~~~~~~-i~-~~~~~---~~~-- 320 (453)
T 4ffc_A 251 LTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVTM--AKGIAGGMPLSAVTGRAE-LM-DAVYA---GGL-- 320 (453)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSCEEEEEEHH-HH-TTSCT---TSS--
T ss_pred HHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHhh--hhhhcCCcCeEEEEECHH-HH-hhhcc---cCc--
Confidence 99999999999999999976532211111111122 4566665 499987778898877543 22 11110 000
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH----hCCCCeEEecCCCeeEEEEE
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELV----GGDNRFEIVAPRNFAVVCFR 407 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L----~~~~~~~~~~~~~~~~v~f~ 407 (486)
..+-....+.+.+++..+..-.-+++.++..++.+++++.| .++|.+..+ .....++.+.
T Consensus 321 ---------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~ 384 (453)
T 4ffc_A 321 ---------------GGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV-RGRGAMLAIE 384 (453)
T ss_dssp ---------------CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE-EEETTEEEEE
T ss_pred ---------------CCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EeeceEEEEE
Confidence 01111234444444443321111234455555555555555 445555433 2233456665
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
+..... .........++.+.+.++|+++..... ...++|+++ +...++++|+++++.|+++++++.++
T Consensus 385 ~~~~~~-------~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~~ 452 (453)
T 4ffc_A 385 IVKPGT-------LEPDAALTKSIAAEALSQGVLILTCGT--FGNVIRLLP-PLVIGDDLLDEGITALSDIIRAKASH 452 (453)
T ss_dssp EBCTTS-------CCBCHHHHHHHHHHHHHTTEECCEECT--TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred EecCcc-------cCCCHHHHHHHHHHHHhCCCEEecCCC--CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 543110 001134456788888888975433321 135799987 45678889999999999999887643
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-16 Score=160.99 Aligned_cols=317 Identities=10% Similarity=-0.011 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH---ccccCCCCeEEEecCC-CchHHH
Q 038818 112 TELENIVMDWLGEMLK-LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE---IGRENISRLVVYGSDQ-THSALQ 186 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~---~~~~~~~~~~v~~s~~-~H~s~~ 186 (486)
.+...++.+.++++++ .+.+ ..++++|||+||..|+.+++.....+ .+..+.++..|++... .|.+..
T Consensus 100 ~~~~~~la~~la~~~~~~~~~-------~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~ 172 (449)
T 2cjg_A 100 SVAMARFVETFARVLGDPALP-------HLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSG 172 (449)
T ss_dssp CHHHHHHHHHHHHHHCCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSST
T ss_pred CHHHHHHHHHHHHhcCCCCCC-------EEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCccc
Confidence 3444566677888876 2222 68999999999999998877432111 0000111445555554 443322
Q ss_pred HHHHH--------cCCC--CCCeEEEecCC--CCC------cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC
Q 038818 187 KAAQI--------AGID--PKNFRAIKTTK--SSS------FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP 248 (486)
Q Consensus 187 ~a~~~--------~G~g--~~~v~~v~~d~--~~~------~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp 248 (486)
.+... .+.. ...++.+|.+. ... ...++++|+++|++. +..+.+|+++..++++|.+-|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~ 249 (449)
T 2cjg_A 173 YTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHF 249 (449)
T ss_dssp TGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEEC
T ss_pred chhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccC
Confidence 21111 2221 12566677642 110 135677798888642 123456777776788897777
Q ss_pred ----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCC
Q 038818 249 ----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTN 324 (486)
Q Consensus 249 ----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~ 324 (486)
+++|+++|++||+++++|++|.++......+.....++ ..|.+++ .|++ | +|+++.+++ ... .+ .
T Consensus 250 ~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~~di~t~--sK~l--~--iG~~~~~~~-~~~-~l--~ 318 (449)
T 2cjg_A 250 RPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDV-APDIVAF--GKKT--Q--VCGVMAGRR-VDE-VA--D 318 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGG--S--SEEEEECGG-GGG-ST--T
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCC-CceEEEe--cCcc--c--EEEEEECHH-Hhh-hh--h
Confidence 99999999999999999999986432111111111122 4677765 4988 4 788887653 221 11 0
Q ss_pred cccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCC-eEEecCC
Q 038818 325 PEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNR-FEIVAPR 399 (486)
Q Consensus 325 ~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~-~~~~~~~ 399 (486)
+.+.... .. ..+-....+.+.+++..+..-.-+++.++..++.+++++.|++ .|. +..+ ++
T Consensus 319 ~~~~~~~---------~~----~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~ 384 (449)
T 2cjg_A 319 NVFAVPS---------RL----NSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP-RG 384 (449)
T ss_dssp CTTTSTT---------SS----CCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EE
T ss_pred hcccCCc---------cc----ccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-ee
Confidence 0011000 00 0011123344444333331100134567777888888888865 354 5433 23
Q ss_pred CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 400 NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 400 ~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
...++.+.+.. .....++.+.|.++|+++... +..++|+++ +..+++++|+++++.|++++
T Consensus 385 ~g~~~~~~~~~--------------~~~~~~~~~~l~~~Gv~v~~~----g~~~iRi~~-~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 385 RGLMCAFSLPT--------------TADRDELIRQLWQRAVIVLPA----GADTVRFRP-PLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp ETTEEEEECSS--------------HHHHHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECC--------------hHHHHHHHHHHHHCCeEEecC----CCCEEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 34566665532 122456777787888754332 346899987 46778999999999999988
Q ss_pred HHH
Q 038818 480 DGI 482 (486)
Q Consensus 480 ~~l 482 (486)
+++
T Consensus 446 ~~~ 448 (449)
T 2cjg_A 446 PVV 448 (449)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-17 Score=163.99 Aligned_cols=310 Identities=12% Similarity=0.016 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
...++.+.+++.++ ..+ ..++++|||+||..|+.+++... . ++.+|+.....|.+...++...|
T Consensus 94 ~~~~l~~~la~~~~-~~~-------~v~~~~~Gsea~~~ai~~a~~~~--~------~~~vi~~~~~yhg~~~~~~~~~g 157 (429)
T 3k28_A 94 IENKLAKLVIERVP-SIE-------IVRMVNSGTEATMSALRLARGYT--G------RNKILKFIGCYHGHGDSLLIKAG 157 (429)
T ss_dssp HHHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH--T------CCEEEEEETCCCCSCGGGCSSCC
T ss_pred HHHHHHHHHHHhCC-CCC-------EEEEeCChHHHHHHHHHHHHHhh--C------CCEEEEECCCcCCCcHHHHHhcC
Confidence 44455677888775 222 68999999999999999887641 0 23444445555544333322223
Q ss_pred CCCC----------------CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHH
Q 038818 194 IDPK----------------NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLC 253 (486)
Q Consensus 194 ~g~~----------------~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~ 253 (486)
.+.. .++.+|. -|+++|++++++... .+.+|+++...+++|.+.| +++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~ 227 (429)
T 3k28_A 158 SGVATLGLPDSPGVPEGVAKNTITVAY-------NDLESVKYAFEQFGD---DIACVIVEPVAGNMGVVPPQPGFLEGLR 227 (429)
T ss_dssp TTC-----CCCTTCCHHHHTTEEEEET-------TCHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHH
T ss_pred CcccccCCCCcCCCCCcccCceeecCC-------CCHHHHHHHHHhCCC---CEEEEEEcCCCCCCCcccCCHHHHHHHH
Confidence 2100 1222222 189999999986421 2456777777777888888 99999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
++|++||+++|+|++|.++ ...........++ ..|.+++ .|.++++.++|+++.+++ .. +.+.......
T Consensus 228 ~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~--sK~~~~G~~iG~~~~~~~-~~-~~~~~~~~~~----- 296 (429)
T 3k28_A 228 EVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGV-TPDLTCL--GKVIGGGLPVGAYGGKAE-IM-RQVAPSGPIY----- 296 (429)
T ss_dssp HHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECHH-HH-TTBTTTSSBC-----
T ss_pred HHHHHcCCEEEEecccccc-ccCcchHHHHhCC-CCceehh--hhhhcCCCCeEEEEEcHH-HH-hhhccCCCcc-----
Confidence 9999999999999999765 2211111111122 3566654 599887778898877543 32 2221100000
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEee
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRVL 409 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~ 409 (486)
...+.....+.+.+++..+.... +++.++..++.+++++.|+++ +.+..+ +....++.|.+.
T Consensus 297 ------------~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~ 362 (429)
T 3k28_A 297 ------------QAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFT 362 (429)
T ss_dssp ------------CCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESS
T ss_pred ------------ccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEe
Confidence 00111223455455444432111 566777777788887777653 322222 223345566554
Q ss_pred cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 410 PSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
......-. ...........++.+.+.++|++ +.+. +...+|++ ...++++++++++.|+++++++
T Consensus 363 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~~r~~---~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 363 DEPVINYD-AAKSSNLQFFAAYYREMVEQGVF-LPPS---QFEGLFLS---TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp SSCCCSHH-HHTTSCHHHHHHHHHHHHHTTEE-CCSS---TTSCBCCC---TTCCHHHHHHHHHHHHHHHHTC
T ss_pred cCCccccc-ccccccHHHHHHHHHHHHHCCeE-EecC---CCCCEEEE---CCCCHHHHHHHHHHHHHHHHHH
Confidence 22100000 00000023446777888888874 3332 23457764 4668889999999999998765
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=162.22 Aligned_cols=310 Identities=10% Similarity=-0.009 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
......++.+++++.++ ..+ ..++++|||+|+..|+..++... + ++.+|+.....|.....+..
T Consensus 90 ~~~~~~~la~~l~~~~~-~~~-------~v~~~~ggsea~~~al~~a~~~~-------~-~~~vi~~~~~yhg~~~~~~~ 153 (427)
T 3fq8_A 90 PCALENVLAEMVNDAVP-SIE-------MVRFVNSGTEACMAVLRIMRAYT-------G-RDKIIKFEGCYHGHADMFLV 153 (427)
T ss_dssp CCHHHHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH-------C-CCEEEEEETCCCCSCGGGCS
T ss_pred CCHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh-------C-CCEEEEECCCcCCCCHHHHH
Confidence 34566778899999987 333 68999999999999998877541 0 23444444444533221111
Q ss_pred HcCC-------CC---------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----ch
Q 038818 191 IAGI-------DP---------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LG 250 (486)
Q Consensus 191 ~~G~-------g~---------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~ 250 (486)
..|. .. ..+..+|.+ |+++|++++++.. ..+.+|+++...+++|.+.| ++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~~~~~~~l~ 223 (427)
T 3fq8_A 154 KAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPDAGFLE 223 (427)
T ss_dssp SCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred hcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCcCCCHHHHH
Confidence 1111 00 024444432 8999999997631 23567888888888899988 99
Q ss_pred HHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccC
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+|.++|++||+++++|++|+++ .....+.....++ ..|.++++ |.+++...+|+++.++ +.. +.+.....+..
T Consensus 224 ~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~~G~~~~~~-~~~-~~~~~~~~~~~- 296 (427)
T 3fq8_A 224 GLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-TPDLTTLG--KIIGGGLPVGAYGGKR-EIM-QLVAPAGPMYQ- 296 (427)
T ss_dssp HHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-CCSEEEEC--GGGGTTSSCEEEEECH-HHH-TTBTTTSSBCC-
T ss_pred HHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-CCChhhhh--hhhhCCcceEEEEEcH-HHH-HhhccCCCccc-
Confidence 9999999999999999999865 2211111111122 35666665 9998666788887643 332 22211100100
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCeeEE
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF---GVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNFAVV 404 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v 404 (486)
..+-....+.+.+++..+ .. +++.++..++.+++++.|+++. ++....+....++
T Consensus 297 ----------------~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 357 (427)
T 3fq8_A 297 ----------------AGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMF 357 (427)
T ss_dssp ----------------CCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEE
T ss_pred ----------------cCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEE
Confidence 011112334444444333 22 3445666666666666665420 1211112223455
Q ss_pred EEEeecCCCCCCCCCC-ccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKA-NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.|.+...... +-.. .........++.+.+.++|+++ .+.. .. |+++ +...++++++++++.|++++++
T Consensus 358 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~Gi~v-~~~~---~~--r~~~-~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 358 GFFFTEGPVH--NYEDAKKSDLQKFSRFHRGMLEQGIYL-APSQ---FE--AGFT-SLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EEESSSCCCC--SHHHHTTSCHHHHHHHHHHHHHTTEEC-CSST---TS--CEEC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccc--cccccccccHHHHHHHHHHHHHCCcEE-ecCC---CC--CEEe-eCcCCHHHHHHHHHHHHHHHHh
Confidence 6655432100 0000 0000233456788888888743 3321 11 4554 3567888999999999998765
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=165.38 Aligned_cols=237 Identities=12% Similarity=0.016 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC-CCchHHHHHHHH--
Q 038818 115 ENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD-QTHSALQKAAQI-- 191 (486)
Q Consensus 115 e~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a~~~-- 191 (486)
..++.+++++++|.+... .-++++|||+||..++.+... +++.|+++. ..|.+....+.+
T Consensus 67 ~~~l~~~la~~~g~~~~~------~~i~~~sGt~Ai~~al~al~~-----------~Gd~Vl~~~~~~y~~~~~~~~l~g 129 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGL------VRPQIISGTHAISTALFGILR-----------PGDELLYITGKPYDTLEEIVGVRG 129 (431)
T ss_dssp HHHHHHHHHHHTTCSEEC------CBTTSCSHHHHHHHHHHTTCC-----------TTCEEEECSSSCCTTHHHHTTSSS
T ss_pred HHHHHHHHHHHhCCCccc------ccceeeCHHHHHHHHHHHhCC-----------CCCEEEEeCCCCchhHHHHHhhcc
Confidence 566778899999987542 112245789999887765432 566777776 788888766543
Q ss_pred --------cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec----CCccccccCCchHHHHHHHH-
Q 038818 192 --------AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV----GTTAITTVDPLGPLCDIAKR- 258 (486)
Q Consensus 192 --------~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~----gtt~~G~idpl~~I~~i~~~- 258 (486)
.|+ +++.+|.++ ++.+|+++|+++|++. +.+|+++. +++.+|.++|+++|+++|++
T Consensus 130 ~~~~~~~~~G~---~~~~v~~~~--~~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~ 198 (431)
T 3ht4_A 130 KGVGSFKEYNI---GYNAVPLTE--GGLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEI 198 (431)
T ss_dssp CSSSCSGGGTC---EEEECCBCT--TSSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHH
T ss_pred cccchHHHcCC---EEEEeCCCC--CCCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhh
Confidence 677 889999875 5799999999998753 45777776 77788888999999999999
Q ss_pred -hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCC---CCcceEEEeeCchHHHHHhc-CCcccccCccC
Q 038818 259 -YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFT---TLDCCCLWVKNPNALIKALS-TNPEFLRNKAS 333 (486)
Q Consensus 259 -~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~---p~~~g~~~~~~~~~~~~~~~-~~~~y~~~~~~ 333 (486)
+|+++++|++|+.+....... . -++|.++.++||++++ |.| |+++.+ ++....... .....+.
T Consensus 199 ~~~~~livDea~~~~~~~~~~~-~-----~g~Di~~~S~sK~lgg~~~~~G-G~v~~~-~~li~~l~~~~~~~~~g---- 266 (431)
T 3ht4_A 199 KPDVVVFVDNCYGEFIEEQEPC-H-----VGADLMAGSLIKNPGGGIVKTG-GYIVGK-EQYVEACAYRLTSPGIG---- 266 (431)
T ss_dssp CTTCEEEEECTTCTTSSSCCGG-G-----TTCSEEEEETTSGGGTTTCSSC-EEEEEC-HHHHHHHHHHHSCTTTT----
T ss_pred CCCCEEEEeCCChhhccCCCcc-c-----cCCeEEEcCccccCCCCCCCce-EEEEec-HHHHHHHHHHhccCCcc----
Confidence 999999999998765322211 1 1689999999999775 444 766665 433332211 0111110
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee-----EEEEEe
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA-----VVCFRV 408 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-----~v~f~~ 408 (486)
...+-.+.. .|..++ +.+.+..++++..+++.++++.|+++ ++++... ... ++.+.+
T Consensus 267 ------------~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~-~~~~~~~li~~i~l 328 (431)
T 3ht4_A 267 ------------AEAGASLYS--LQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL-GMNTSPA-WNAPRTDLIQSVQF 328 (431)
T ss_dssp ------------TSCSCCCSC--SHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEESC-TTSCCSSSCCEEEC
T ss_pred ------------cccCccHHH--HHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC-cCEecCC-CCCCCccEEEEEEe
Confidence 011111111 123333 33455678888999999999999987 5666422 222 566666
Q ss_pred e
Q 038818 409 L 409 (486)
Q Consensus 409 ~ 409 (486)
.
T Consensus 329 ~ 329 (431)
T 3ht4_A 329 D 329 (431)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-16 Score=159.55 Aligned_cols=313 Identities=12% Similarity=0.025 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEec-CCCchHHHHHHHH
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGS-DQTHSALQKAAQI 191 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s-~~~H~s~~~a~~~ 191 (486)
....++.+++++.++ ..+ ..++++|||+|+..|+.+++... ++..|++. ...|.+...+...
T Consensus 95 ~~~~~l~~~la~~~~-~~~-------~v~~~~sGsea~~~ai~~a~~~~---------~~~~vi~~~~~yhg~~~~~~~~ 157 (434)
T 3l44_A 95 ALEVKFAKMLKEAMP-ALD-------KVRFVNSGTEAVMTTIRVARAYT---------GRTKIMKFAGCYHGHSDLVLVA 157 (434)
T ss_dssp HHHHHHHHHHHHHCT-TCS-------EEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSGGGGBC
T ss_pred HHHHHHHHHHHHhCC-CCC-------EEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEEcCccCCCcHHHHhh
Confidence 344556677888876 333 68999999999999999887642 34444444 3444333222222
Q ss_pred cCCCC----------------CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chH
Q 038818 192 AGIDP----------------KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGP 251 (486)
Q Consensus 192 ~G~g~----------------~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~ 251 (486)
.|.+. ..+..+|. -|+++|+++|++... .+.+|+++...+++|.+.| +++
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~ 227 (434)
T 3l44_A 158 AGSGPSTLGTPDSAGVPQSIAQEVITVPF-------NNVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPKPGFLEK 227 (434)
T ss_dssp -------CCCBSSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHH
T ss_pred cCCcccccCCCCcCCCCCcCCCceEecCc-------ccHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCCHHHHHH
Confidence 22110 02333332 189999999986421 2456777777777888887 999
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCc
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNK 331 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~ 331 (486)
|.++|++||++||+|++|.++ ...........++ ..|.+++ .|.++++.++|.++.++ +.. +.+.......
T Consensus 228 l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~-~~di~t~--sK~~~~G~~iG~~~~~~-~i~-~~~~~~~~~~--- 298 (434)
T 3l44_A 228 VNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGV-TPDLTAL--GKVIGGGLPIGAYGGKK-EIM-EQVAPLGPAY--- 298 (434)
T ss_dssp HHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTC-CCSEEEE--EGGGGTTSSCEEEEECH-HHH-TTBTTTSSBC---
T ss_pred HHHHHHHcCCEEEEeccccce-eccccHHHHHcCC-CCCeeeh--hhhhcCCcCeeeEEEcH-HHH-HhhccCCCcc---
Confidence 999999999999999999875 2211111111122 3566655 59888888899886654 332 2221100000
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEE
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFR 407 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~ 407 (486)
...+.....+.+.+++..+..-.-+++.++..++.+++++.|++ .+.+..+ ++..+++.+.
T Consensus 299 --------------~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~ 363 (434)
T 3l44_A 299 --------------QAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALTVY 363 (434)
T ss_dssp --------------CCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEEEE
T ss_pred --------------cCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEEEE
Confidence 00111223344444433331100034556666666666666654 3322222 2334566666
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+......... ...........++.+.|.++|++ +.+. +...+|++ ...+++|++++++.|+++++++.+
T Consensus 364 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~~rl~---~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 364 FTTNTIEDYD-AAQDTDGEMFGKFFKLMLQEGVN-LAPS---KYEAWFLT---TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp ESSSCCCSHH-HHHHSCHHHHHHHHHHHHHTTEE-CCSS---TTCCEECC---TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccchh-hccccCHHHHHHHHHHHHHCCeE-Eeec---CCCcEEEe---cccCHHHHHHHHHHHHHHHHHHHh
Confidence 6432100000 00000023345677888888874 3332 22457774 466888999999999999887653
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-16 Score=156.76 Aligned_cols=314 Identities=12% Similarity=0.015 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ 190 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 190 (486)
..+++.++.+|++++++ ..+ ..++++||++|+..++.++|... . ++.+|+.....|.....+..
T Consensus 95 ~~~~~~~la~~l~~~~~-~~~-------~v~~~~gg~eA~~~al~~ar~~~--~------~~~vi~~~~~yhg~~~~~~~ 158 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFP-SIR-------KLRFTGSGTETTLLALRVARAFT--G------RRMILRFEGHYHGWHDFSAS 158 (453)
T ss_dssp SCHHHHHHHHHHHHHCT-TCS-------EEEEESCHHHHHHHHHHHHHHHH--C------CCEEEEECC-----------
T ss_pred CCHHHHHHHHHHHhhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh--C------CCEEEEEcCCcCCCchhhHh
Confidence 46788899999999986 333 68999999999999999876431 0 34445444344432222211
Q ss_pred H----------cCCCC---CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHH
Q 038818 191 I----------AGIDP---KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLC 253 (486)
Q Consensus 191 ~----------~G~g~---~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~ 253 (486)
. .|+.. ..+..+|. .|+++|+++|++.. ..+.+|+++...+++|.+.| +++|.
T Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~~~~~~l~~l~ 228 (453)
T 2cy8_A 159 GYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG---SDIAAFIAEPVGSHFGVTPVSDSFLREGA 228 (453)
T ss_dssp -----------------CGGGEEEECT-------TCHHHHHHHHHHHG---GGEEEEEECSSEHHHHTEECCHHHHHHHH
T ss_pred hcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC---CCEEEEEECCCCCCCCCcCCCHHHHHHHH
Confidence 1 23310 12333432 38999999998531 12456776666677898877 99999
Q ss_pred HHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccC
Q 038818 254 DIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKAS 333 (486)
Q Consensus 254 ~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 333 (486)
++|++||++|++|++|+++ ...+.+.....++ ..|.++ +.|+++++.++|+++.+++ .. +.+... . ..
T Consensus 229 ~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s--~sK~l~~G~~~G~v~~~~~-~~-~~l~~~--~--~~-- 296 (453)
T 2cy8_A 229 ELARQYGALFILDEVISGF-RVGNHGMQALLDV-QPDLTC--LAKASAGGLPGGILGGRED-VM-GVLSRG--S--DR-- 296 (453)
T ss_dssp HHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-CCSEEE--EEGGGGTTSSCEEEEECHH-HH-TTSSSC--C------
T ss_pred HHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-CCcEEE--EChhhhCCcceEEEechHH-HH-HHhccc--c--CC--
Confidence 9999999999999999864 2221111111122 357654 5699997778899888743 22 222110 0 00
Q ss_pred CCCCccCCCCccccCCCCCCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCC----CCeEEecCCCeeEEEEEe
Q 038818 334 DSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGD----NRFEIVAPRNFAVVCFRV 408 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~ 408 (486)
. . ....+-....+.+.+++..+.. - .+++.++..++++++++.|+++ +....+ ++...++.+.+
T Consensus 297 ---~---~---~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~ 365 (453)
T 2cy8_A 297 ---K---V---LHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLA-YGRFSGFHLMP 365 (453)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECCTTEEEEEE
T ss_pred ---C---c---eeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEeeeEEEEEE
Confidence 0 0 0000111233434443333321 1 2345667777888888877653 322222 34445677766
Q ss_pred ec-----CC-C-CCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 409 LP-----SA-S-GLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 409 ~~-----~~-~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.. .. . ...+. .........++.+.|.++|+++ .+. + .+|+ +...++++|+++++.|++++++
T Consensus 366 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~Gv~v-~~~---~--~~~l---~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 366 GLPPNTTDTGSITRAEV--ARPDVKMIAAMRMALILEGVDI-GGR---G--SVFL---SAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp TSCTTCCCCHHHHTTCS--CCCCHHHHHHHHHHHHHTTEEC-BTT---T--EEEC---CTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecccccccccccccccc--ccccHHHHHHHHHHHHHCCeEE-eCC---C--CEEe---eccCCHHHHHHHHHHHHHHHHH
Confidence 53 10 0 00000 0000223456777788888743 321 2 2454 3577888999999999999877
Q ss_pred Hhh
Q 038818 482 ILA 484 (486)
Q Consensus 482 l~~ 484 (486)
+.+
T Consensus 435 ~~~ 437 (453)
T 2cy8_A 435 LAD 437 (453)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=158.74 Aligned_cols=315 Identities=11% Similarity=0.023 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.....++.++++++++ ..+ ..++++|||+|+..++.++|... . ++.+|+.....|.....+...
T Consensus 95 ~~~~~~l~~~la~~~~-~~~-------~v~~~~sgseA~~~al~~ar~~~--~------~~~vi~~~~~yhg~~~~~~~~ 158 (434)
T 2epj_A 95 GEAEVLLAEKILGYVK-RGG-------MIRFVNSGTEATMTAIRLARGYT--G------RDLILKFDGCYHGSHDAVLVA 158 (434)
T ss_dssp CHHHHHHHHHHHHHHC-TTC-------EEEEESSHHHHHHHHHHHHHHHH--C------CCEEEEEETCCCCSSGGGSEE
T ss_pred CHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh--C------CCeEEEEcCCcCCCCHHHHHh
Confidence 4556667788888884 222 68999999999999999876431 0 344454444444322211111
Q ss_pred -------------cCCC---CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chH
Q 038818 192 -------------AGID---PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGP 251 (486)
Q Consensus 192 -------------~G~g---~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~ 251 (486)
.|+. ...+..+|. .|+++|+++|++.. ..+.+|+++...+++|.+.| +++
T Consensus 159 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~ 228 (434)
T 2epj_A 159 AGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFAEYG---DRIAGVIVEPVIANAGVIPPRREFLAA 228 (434)
T ss_dssp CC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHH
T ss_pred cCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHH
Confidence 1221 013555553 28999999997631 12456777766677899888 999
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCc
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNK 331 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~ 331 (486)
|.++|++||++|++|++|+++ ...+.+.....++ ..|.+++ +|+++....+|+++.++ +.. +.+.......
T Consensus 229 l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~~G~v~~~~-~~~-~~l~~~~~~~--- 299 (434)
T 2epj_A 229 LQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI-EGDIIVL--GKIIGGGFPVGAVAGSR-EVM-SLLTPQGKVF--- 299 (434)
T ss_dssp HHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-CCSEEEE--EGGGGTTSSCEEEEECH-HHH-TTBTTTSSBC---
T ss_pred HHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-CCCeeee--cchhcCCcceeeeeecH-HHH-HhhccCCCcc---
Confidence 999999999999999999865 2211111111122 4676544 69998766789888864 332 2221100000
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCeeEEEEEe
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNFAVVCFRV 408 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~ 408 (486)
...+-....+.+.+++..+..-.-+++.++..++++++++.|+++. ++....++...++.+.+
T Consensus 300 --------------~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~ 365 (434)
T 2epj_A 300 --------------NAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFI 365 (434)
T ss_dssp --------------CCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEE
T ss_pred --------------cCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEE
Confidence 0001112333333333322110003456777778888888886541 23211123345666666
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.....+.-. ...........++.+.|.++|+. +.+.. ...+|++ ...+++|++++++.|+++++++.
T Consensus 366 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv~-v~~~~---~~~~~~~---~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 366 GVEEVSNAA-QARKADKKFYVKLHEEMLRRGVF-IAPSN---LEAVFTG---LPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp TCSCCSSHH-HHTTSCHHHHHHHHHHHHHTTEE-CCSST---TSCEECC---TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCcccch-hccccCHHHHHHHHHHHHHCCeE-EeccC---CCcEEEe---ccCCHHHHHHHHHHHHHHHHHHh
Confidence 431000000 00000012345677788888874 33321 1234443 46788899999999999988765
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-16 Score=158.36 Aligned_cols=311 Identities=11% Similarity=0.010 Sum_probs=178.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH-cc----------------ccCC-CC
Q 038818 111 ATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE-IG----------------RENI-SR 172 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~-~~----------------~~~~-~~ 172 (486)
..++++++.+.++++++...+ ..+|++|||+||..|+.+++.....+ .+ ..|. +.
T Consensus 108 ~~~l~~~la~~l~~~~~~~~~-------~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~ 180 (472)
T 1ohv_A 108 PENFVEKLRESLLSVAPKGMS-------QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDY 180 (472)
T ss_dssp BTTHHHHHHHTGGGGCCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcC-------EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCC
Confidence 356777777777777643322 68999999999999999997543210 00 0111 13
Q ss_pred eEEEecCCCchHHHHHHHHcCC--------CCCCeEEEecCCCCCc-------------ccCHHHHHHHHHHHHHCCCcc
Q 038818 173 LVVYGSDQTHSALQKAAQIAGI--------DPKNFRAIKTTKSSSF-------------TLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 173 ~~v~~s~~~H~s~~~a~~~~G~--------g~~~v~~v~~d~~~~~-------------~~d~~~L~~~l~~~~~~g~~p 231 (486)
.+|......|-+...+....|. +...+..+++... .+ ..|+++|+++|++....+..+
T Consensus 181 ~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 259 (472)
T 1ohv_A 181 SILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRL-KYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTV 259 (472)
T ss_dssp EEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCC-CSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcc-cCccccccccchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 4444555566555555555442 1111122333210 00 237899999998643222235
Q ss_pred EEEEeecCCccccccCC----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC-CCCceeecccccc-CCCCc
Q 038818 232 LFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GADSFSLNAHKWF-FTTLD 305 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aDsi~~~~hK~l-~~p~~ 305 (486)
.+|+++...+++|.+.| +++|+++|++||++||+|++|.++......+.....++. ..|.++++ |++ +
T Consensus 260 ~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---- 333 (472)
T 1ohv_A 260 AGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---- 333 (472)
T ss_dssp EEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS----
T ss_pred EEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc----
Confidence 67788777888998877 999999999999999999999753211110011111221 27877765 984 3
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQL 382 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~ 382 (486)
.|+++ + +.. . ...+... ..+-....+.+. .++..+-. .++.++..+++++
T Consensus 334 GG~~~-~-~~~-~---~~~~~~~------------------~~T~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~ 386 (472)
T 1ohv_A 334 GGFFH-K-EEF-R---PNAPYRI------------------FNTWLGDPSKNLLLAEVINIIKR---EDLLSNAAHAGKV 386 (472)
T ss_dssp EEEEE-C-GGG-S---CSSSSSS------------------CCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred CCccC-c-hhh-c---ccccccc------------------cCccCccHHHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence 25443 2 221 0 0000000 011112233333 33433322 2356777788888
Q ss_pred HHHHHhCC----CC-eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEE
Q 038818 383 FQELVGGD----NR-FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFA 457 (486)
Q Consensus 383 l~~~L~~~----~~-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~ 457 (486)
|++.|+++ |. +..+ .+...++.|.+.. ......+.+.|.++|+.+... +..++|++
T Consensus 387 l~~~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~--------------~~~~~~~~~~l~~~Gv~~~~~----g~~~iRi~ 447 (472)
T 1ohv_A 387 LLTGLLDLQARYPQFISRV-RGRGTFCSFDTPD--------------ESIRNKLISIARNKGVMLGGC----GDKSIRFR 447 (472)
T ss_dssp HHHHHHHHHHHCTTTCEEE-EEETTEEEEECSS--------------HHHHHHHHHHHHHTTEECEEE----TTTEEEEC
T ss_pred HHHHHHHHHhhCCCcEEee-cCCceEEEEEeCC--------------hhHHHHHHHHHHHCCeEEecC----CCCEEEEE
Confidence 88887653 43 3322 2233455554431 223456777888888754321 34689998
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 458 VGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+ +..++++|||++++.|+++++++
T Consensus 448 ~-~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 448 P-TLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 8 46788899999999999987654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-16 Score=151.67 Aligned_cols=313 Identities=11% Similarity=0.056 Sum_probs=192.6
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcc--eEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCC--
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGG--GVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQ-- 180 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~--~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~-- 180 (486)
|.......++|.-+++..+++||++... + -+=..+|+.||+.+..+..+ |++.|+.-+.
T Consensus 92 YgGce~vD~iE~la~~rak~lF~a~~A~------w~VNVQP~SGs~AN~avy~All~-----------PGD~ilg~~l~~ 154 (490)
T 3ou5_A 92 YGGAEVVDEIELLCQRRALEAFDLDPAQ------WGVNVQPYSGSPANLAVYTALLQ-----------PHDRIMGLDLPD 154 (490)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCTTT------EEEECCCSSHHHHHHHHHHHHCC------------CCCEECBC---
T ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccc------cCCCCCcCCHHHHHHHHHHHHcC-----------CCCEEEecccCC
Confidence 3445557899999999999999998642 2 24466889999877776654 5666664443
Q ss_pred -CchHHHH-----HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHH
Q 038818 181 -THSALQK-----AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCD 254 (486)
Q Consensus 181 -~H~s~~~-----a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~ 254 (486)
.|.+... .....|... +.+..++|+ +++.+|.+.+++...+.+ |.+|++- .+..-..-|++++++
T Consensus 155 GGHltHg~~~~~~~v~~sg~~~-~~~~Y~vd~-~t~~IDyd~~~~~A~~~k-----PklIi~G--~SaY~r~id~~~~re 225 (490)
T 3ou5_A 155 GGHLTHGYMSDVKRISATSIFF-ESMPYKLNP-KTGLIDYNQLALTARLFR-----PRLIIAG--TSAYARLIDYARMRE 225 (490)
T ss_dssp --------------------------CBCEET-TTTEECHHHHHHHHHHHC-----CSEEEEC--CSSCCSCCCHHHHHH
T ss_pred CCcccccccCCCcccccccccc-cccccccCC-CCCcccHHHHHHHHhhcC-----CCeEEEC--CccCccccCHHHHHH
Confidence 4544432 222333311 345556665 367999999999888763 6665553 344456789999999
Q ss_pred HHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchH-------------HHHHh
Q 038818 255 IAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA-------------LIKAL 321 (486)
Q Consensus 255 i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~-------------~~~~~ 321 (486)
||++.|++|++|.||-.+++....+..-+ +.||.+|.+.||+|.+|. +|++++++... +.+.+
T Consensus 226 IAd~vGA~Lm~DmAHiaGLVA~g~~psP~---~~ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~~~~~~~kki 301 (490)
T 3ou5_A 226 VCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRI 301 (490)
T ss_dssp HHHHHTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCEEECCCHHHH
T ss_pred HHhhcccEEEechhhhhhhhcccccCCcc---ccceEEeccccccccCCC-ceEEEeccccccccccccchhHHHHHHHH
Confidence 99999999999999977766544443333 479999999999999997 58888876310 00000
Q ss_pred --cCCcccccCccCCCCCccCCCCccccCCCCCCc-hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 322 --STNPEFLRNKASDSKQVVDYKDWQITLSRRFRA-LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 322 --~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~-l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
...| +++++-.... .+...+++..-...+++..++..++|+.|.+.|.+. |++++..
T Consensus 302 n~aVFP-------------------g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsG 361 (490)
T 3ou5_A 302 NFAVFP-------------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSG 361 (490)
T ss_dssp HHHHTT-------------------TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGG
T ss_pred HhhcCc-------------------cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecC
Confidence 0011 1222222222 233334444334567889999999999999999987 9999853
Q ss_pred -CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-----CEeEEEEEe---cCCCCcHHHHH
Q 038818 399 -RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-----GIYFIRFAV---GATLTEDRHVI 469 (486)
Q Consensus 399 -~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----~~~~lR~~~---~~~~tt~~did 469 (486)
.+.+.+.+.+.+... .. ++..+.|.+.|+.+-.-+... ....||+.. +.....++|++
T Consensus 362 gTdnHlvLvDl~~~g~----------tG---~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~ 428 (490)
T 3ou5_A 362 GTDNHLVLVDLRPKGL----------DG---ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFR 428 (490)
T ss_dssp SCSSSEEEEECGGGTC----------CH---HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHH
T ss_pred CCCceEEEEeccccCC----------CH---HHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHH
Confidence 456777777765321 02 233344445576432211111 134699987 34456778999
Q ss_pred HHHHHHHHHHH
Q 038818 470 AAWKVVQEKLD 480 (486)
Q Consensus 470 ~~i~~l~~~~~ 480 (486)
++.+.|.+++.
T Consensus 429 ~IA~~I~~~l~ 439 (490)
T 3ou5_A 429 RVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887653
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=154.75 Aligned_cols=311 Identities=8% Similarity=0.001 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
....++.++++++++ ..+ ..++++|||+|+..|+.+++... . ++.+|......|.....++...
T Consensus 93 ~~~~~la~~l~~~~~-~~~-------~v~~~~sGsea~~~al~~a~~~~--~------~~~ii~~~~~yhg~~~~~~~~~ 156 (429)
T 4e77_A 93 EMEVKMAQLVTDLVP-TMD-------MVRMVNSGTEATMSAIRLARGYT--G------RDKIIKFEGCYHGHADCLLVKA 156 (429)
T ss_dssp HHHHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH--C------CCEEEEETTCCCC---------
T ss_pred HHHHHHHHHHHhhCC-CCC-------EEEEeCcHHHHHHHHHHHHHHhh--C------CCEEEEEcCccCCCChhhhhhc
Confidence 455667788888886 232 68999999999999999887531 0 3344545555555444332222
Q ss_pred CCCCC----------------CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHH
Q 038818 193 GIDPK----------------NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPL 252 (486)
Q Consensus 193 G~g~~----------------~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I 252 (486)
|.+.. .+..+|. .|+++|++++++. +..+.+|+++...+..|.+.| +++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l 226 (429)
T 4e77_A 157 GSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGL 226 (429)
T ss_dssp ---------CCCTTSCGGGGTTEEEECT-------TCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHH
T ss_pred CCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHH
Confidence 21100 1222221 2899999999752 122456666666666788887 9999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
.++|++||++|++|++|+++ .....+.....++ ..|.+++ .|.++++.+.|+++.++ +.. +.+.......
T Consensus 227 ~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~pdi~t~--sK~~~~G~~~G~~~~~~-~~~-~~l~~~~~~~---- 296 (429)
T 4e77_A 227 RALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-IPDLTCL--GKIIGGGMPVGAFGGRR-EVM-NALAPTGPVY---- 296 (429)
T ss_dssp HHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-CCSEEEE--EGGGGTTSCCEEEEECH-HHH-TTBTTTSSBC----
T ss_pred HHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-CCCeeee--cccccCCCCeEEEEECH-HHH-HHhccCCCcc----
Confidence 99999999999999999865 2211111111122 3466654 59998777788777653 332 2221100000
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCCeEEecCCCeeEEEEEe
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNRFEIVAPRNFAVVCFRV 408 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~v~f~~ 408 (486)
...+-....+.+.+++..+..-.-+++.++..++.+++++.|++ .+ +....+....++.+.+
T Consensus 297 -------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~ 362 (429)
T 4e77_A 297 -------------QAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEEN-IPLVVNHVGGMFGLFF 362 (429)
T ss_dssp -------------C--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEEC
T ss_pred -------------ccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEEE
Confidence 00011123344444333321100134455566666666666644 32 2111122334566665
Q ss_pred ecCCCCCCCCC-CccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 409 LPSASGLGDGK-ANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
...... .+-. ..........++.+.|.++|++ +.+. +...+|+ +...+++|++++++.|++++++
T Consensus 363 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~---~~~~~~~---~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 363 TNADTV-TCYQDVMNCDVERFKRFFHLMLEEGVY-LAPS---AFEAGFM---SLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp CSSSCC-CSHHHHHTSCHHHHHHHHHHHHHTTEE-CCSS---TTSCEEC---CTTCCHHHHHHHHHHHHHHHTT
T ss_pred ccCccc-ccccccccccHHHHHHHHHHHHHCCeE-Eeec---CCCCEEE---eccCCHHHHHHHHHHHHHHHHh
Confidence 432100 0000 0000023346778888888874 3332 1223444 3567889999999999998754
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-16 Score=153.55 Aligned_cols=326 Identities=11% Similarity=0.019 Sum_probs=198.5
Q ss_pred HHHHHHHHHhhc--CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGF--NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 87 ~~~~~~~l~~~~--n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
+..+.++.. .. +.....|....+..++.+.+.+|+.+..+.+... +.-.+++|.||++|+..++.+....
T Consensus 49 ~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~---~~i~i~~t~G~~~al~~~~~~l~~~---- 120 (405)
T 3k7y_A 49 FDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIED---KKICTIQCIGGTGAIFVLLEFLKML---- 120 (405)
T ss_dssp CHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTT---TCEEEEEEEHHHHHHHHHHHHHHTT----
T ss_pred cHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccc---cceEEEEcCchHHHHHHHHHHHHhc----
Confidence 444555544 32 2234567766778899999999986655433110 0003588999998887776655431
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecC-Cccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVG-TTAI 243 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~g-tt~~ 243 (486)
.+ +.|+++..++.....+++..|. +++.+|+...+++.+|+++|++++++.. ...+|+++.+ +|||
T Consensus 121 -----~~-d~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~i~l~~~~~NPT 187 (405)
T 3k7y_A 121 -----NV-ETLYVTNPPYINHVNMIESRGF---NLKYINFFDYNLIDINYDLFLNDLRNIP----NGSSVILQISCYNPC 187 (405)
T ss_dssp -----TC-CEEEEESSCCHHHHHHHHTTTC---EEEEECCEETTTTEECHHHHHHHHHHSC----SSCEEEECCSSCTTT
T ss_pred -----CC-CEEEEeCCCCHhHHHHHHHcCC---eEEEEeccccccCCcCHHHHHHHHHhCC----CCeEEEEeCCCCCCC
Confidence 15 7889999999999999999999 9999998322357999999999997521 1235666554 8999
Q ss_pred cccCC---chHHHHHHHHhCceEEeeccccchhccC-c-c---chhhhcCCCCCC-ceeeccccccC-CCCcceEEEe--
Q 038818 244 TTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACIC-P-E---FRHFIDGIEGAD-SFSLNAHKWFF-TTLDCCCLWV-- 311 (486)
Q Consensus 244 G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~-~-~---~~~~~~~~~~aD-si~~~~hK~l~-~p~~~g~~~~-- 311 (486)
|.+-+ +++|+++|++||+++++|.+|....... + . .+... .. .-. .+..++.|.++ ...-+|++++
T Consensus 188 G~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~-~~-~~~~i~~~S~SK~~~l~GlRiG~~~~~~ 265 (405)
T 3k7y_A 188 SVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFE-EK-NIAFSVCQSFSKNMSLYGERAGALHIVC 265 (405)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHH-TT-TCCEEEEEECTTTSCCTTTTEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHH-hc-CCcEEEEeeCCccCCCccccceEEEEEe
Confidence 99844 7788899999999999999997654211 0 0 11111 11 112 44567899998 5567888754
Q ss_pred eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHH
Q 038818 312 KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 312 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l 383 (486)
.+++...+..... ..+... . .+ ....+...++...+. .+.+.++.++..+.++++
T Consensus 266 ~~~~~~~~~~~~l-~~~~~~-------------~--~~-~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l 328 (405)
T 3k7y_A 266 KNQEEKKIVFNNL-CFIVRK-------------F--YS-SPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILF 328 (405)
T ss_dssp SSHHHHHHHHHHH-HHHHHT-------------T--TS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHHHhc-------------c--cC-CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554322111000 000000 0 00 011222222222221 123455566678888999
Q ss_pred HHHHh----CCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEE
Q 038818 384 QELVG----GDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRF 456 (486)
Q Consensus 384 ~~~L~----~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~ 456 (486)
.+.|+ ++. ++++. +|..+++.|.-.+ . .+.++|.+.|+. +.+. + |+
T Consensus 329 ~~~L~~~~~~~g~~~~~~~~-~p~gg~f~~~~l~--------------~----~~~~~L~~~gV~-v~p~---~----Ri 381 (405)
T 3k7y_A 329 FNKLETYQKKYNLNYDWNVY-KKQRGLFSFVPLL--------------A----KIAEHLKTHHIY-IINN---G----RI 381 (405)
T ss_dssp HHHHHHHGGGGTCCCCGGGG-SSCCSSEEECGGG--------------G----GGTTTTTTTTEE-CCTT---S----EE
T ss_pred HHHHHhhhhhcCCCCCCccc-cCCceEEEecCCC--------------H----HHHHHHHHCCEe-ecCC---C----eE
Confidence 99998 762 14443 5666766653211 1 112344455653 4432 1 99
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 457 AVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 457 ~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
++. ..++++|++++++|++++++
T Consensus 382 s~a--~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 382 NVS--GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp EGG--GCCTTHHHHHHHHHHHHHHC
T ss_pred EEe--ccCHHHHHHHHHHHHHHHhh
Confidence 985 44566899999999998865
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-15 Score=146.87 Aligned_cols=292 Identities=9% Similarity=-0.037 Sum_probs=181.6
Q ss_pred cccccChhh-----HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCe----
Q 038818 103 FNWMSSPAA-----TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRL---- 173 (486)
Q Consensus 103 ~~~~~~~~~-----~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~---- 173 (486)
..|....+. .++++.+.+|+. ..|.+... ....++|+|+++++..++.+..+ +++
T Consensus 57 ~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~----~~~i~~t~G~~~al~~~~~~l~~-----------~Gd~~~~ 120 (391)
T 3bwn_A 57 SYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATE----DRYIVVGTGSTQLCQAAVHALSS-----------LARSQPV 120 (391)
T ss_dssp SSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCS----SSEEEEEEHHHHHHHHHHHHHHH-----------TSSSSSE
T ss_pred hcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCC----CCeEEEeCChHHHHHHHHHHhcC-----------CCCCCcc
Confidence 345554454 788888888877 45653210 12689999999998877776644 455
Q ss_pred EEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHH
Q 038818 174 VVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLC 253 (486)
Q Consensus 174 ~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~ 253 (486)
.|+++..+|.++...++..|. +++.+++|.+ .++ . ..+.+|+++.++|+||.+-+ +|+
T Consensus 121 ~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~d~~---~l~--------~------~~~k~v~l~~p~NPtG~~~~--~l~ 178 (391)
T 3bwn_A 121 SVVAAAPFYSTYVEETTYVRS---GMYKWEGDAW---GFD--------K------KGPYIELVTSPNNPDGTIRE--TVV 178 (391)
T ss_dssp EEEECSSCCTHHHHHHHTTCB---TTEEEEEEST---TCC--------C------CSCEEEEEESSCTTTCCCCC--CCC
T ss_pred eEEEcCCCchhHHHHHHHcCC---eEEEecCCHH---HcC--------C------CCCEEEEECCCCCCCchhHH--HHH
Confidence 788999999999999999999 8999998752 222 0 12457778999999999975 554
Q ss_pred HHHHHhC--ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccC
Q 038818 254 DIAKRYS--IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 254 ~i~~~~g--~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+ ++++ +++++|++|+.. ... .+......+.+..+++|.++.| ..+|++++.++......... ..+...
T Consensus 179 ~--~~~~~~~~ii~De~y~~~-----~~~-~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~-~~~~~~ 249 (391)
T 3bwn_A 179 N--RPDDDEAKVIHDFAYYWP-----HYT-PITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY-IIVNSI 249 (391)
T ss_dssp -------CCCEEEEECTTCST-----TTS-CCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHH-HHHHHS
T ss_pred H--HhhcCCCEEEEeCCCCCC-----CCC-ccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHH-hccccc
Confidence 4 2255 999999999631 111 1111224567888999998744 34688887555443322111 011000
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--c----------hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--G----------VANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g----------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
....+..+++...+ + .+.++++.++..++++++.+.|++++++++..+
T Consensus 250 --------------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 309 (391)
T 3bwn_A 250 --------------------GVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKY 309 (391)
T ss_dssp --------------------SCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCC
T ss_pred --------------------CCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence 01222222222222 1 345777888888999999999999887776533
Q ss_pred CCe------------e-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-CEeEEEEEecCCCCc
Q 038818 399 RNF------------A-VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-GIYFIRFAVGATLTE 464 (486)
Q Consensus 399 ~~~------------~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~lR~~~~~~~tt 464 (486)
... + .+.+.+... ..+.+.+.+.|+.+..+..+. +.+++|+++. ++
T Consensus 310 ~~~~~~f~~~~~~~~g~~~~~~~~~~-----------------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~---~~ 369 (391)
T 3bwn_A 310 PEAFCNYFGKSLESYPAFAWLGTKEE-----------------TDLVSELRRHKVMSRAGERCGSDKKHVRVSML---SR 369 (391)
T ss_dssp CCEEETTTTEEECCCCSEEEEEESSS-----------------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC---SC
T ss_pred CccccccccccCCCcceEEEecCCcH-----------------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec---CC
Confidence 211 1 234444321 123444556787654443332 2568999985 37
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038818 465 DRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 465 ~~did~~i~~l~~~~~~ 481 (486)
+++++++++.|++++++
T Consensus 370 ~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 370 EDVFNVFLERLANMKLI 386 (391)
T ss_dssp HHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77999999999877643
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=156.30 Aligned_cols=349 Identities=10% Similarity=0.006 Sum_probs=194.4
Q ss_pred ccccChhhHHHHHH-HHHHHHHHcCC--CC-CCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC
Q 038818 104 NWMSSPAATELENI-VMDWLGEMLKL--PK-SFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD 179 (486)
Q Consensus 104 ~~~~~~~~~~le~~-~~~~l~~l~g~--~~-~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~ 179 (486)
.|...++...+.++ +..|+.+.++. +. . ...+++|+|+++++..++.+...+.+ ..+++.|+++.
T Consensus 133 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-----~~~I~~t~G~~eal~~~~~~l~~~~l------~~~Gd~Vlv~~ 201 (546)
T 2zy4_A 133 NYPVPPRMLNISEKIVRQYIIREMGADAIPSE-----SVNLFAVEGGTAAMAYIFESLKLNGL------LKAGDKVAIGM 201 (546)
T ss_dssp SCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGG-----GEEEEEEEHHHHHHHHHHHHHHHTTS------SCTTCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhccCCCCCCC-----cceEEEECCHHHHHHHHHHHhhhhhc------CCCCCEEEEeC
Confidence 45444344445444 45566666543 11 1 12789999999998777665321100 01567788888
Q ss_pred CCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHH
Q 038818 180 QTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIA 256 (486)
Q Consensus 180 ~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~ 256 (486)
.+|+....++...+.|. +++.+|++++++|.+|+++|++++.. .+.+|+++.++|++|.+-+ +++|+++|
T Consensus 202 P~y~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a 274 (546)
T 2zy4_A 202 PVFTPYIEIPELAQYAL-EEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCVNPSNPPSVKMDQRSLERVRNIV 274 (546)
T ss_dssp SCCHHHHHHHHSTTSCC-EEEEEECBGGGTTBCCHHHHGGGGST------TEEEEEEESSCSSSCBCCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHcCCCc-EEEEEecCcccCCCCCHHHHHHhhCC------CCeEEEEECCCCCCCccCCHHHHHHHHHHH
Confidence 99999888877654322 78889987655678999999887632 2457777899999999866 66788888
Q ss_pred --HHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCc--------
Q 038818 257 --KRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNP-------- 325 (486)
Q Consensus 257 --~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~-------- 325 (486)
+++|+++++|++|+.+.......... ....+.+..+++|+++.| ..+|+++..++..........+
T Consensus 275 ~~~~~~~~ii~De~y~~~~~~~~s~~~~---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~ 351 (546)
T 2zy4_A 275 AEHRPDLMILTDDVYGTFADDFQSLFAI---CPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALD 351 (546)
T ss_dssp HHTCTTCEEEEECTTGGGSTTCCCHHHH---CGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHH
T ss_pred HhccCCcEEEEeCcchhhcccCcCHHHh---CCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHH
Confidence 78999999999998654211111111 123456788999999744 4589988877533322211100
Q ss_pred -ccccCccCCCCCccCC--------CCccccCCCCCCchHHHH----HH-HHh--chHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 326 -EFLRNKASDSKQVVDY--------KDWQITLSRRFRALKLWL----VL-RSF--GVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 326 -~y~~~~~~~~~~~~~~--------~~~~~~~sr~~~~l~~~~----~l-~~~--g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
.|-.... ......+ .......+.....+.... ++ ..+ +....+++.+...++.+.+.+.|.
T Consensus 352 ~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~- 428 (546)
T 2zy4_A 352 HRYRSLLP--DVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG- 428 (546)
T ss_dssp HHHTTTCS--CGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-
T ss_pred HHhhhccc--cccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 0000000 0000000 000000000111111111 11 222 234455666666677777888875
Q ss_pred CCCeEEecCCCeeEE-EEEeecCCCCCCCCCCcc---ch--H-HHHHHHHHHHHhcCcEEEeeeeEC-CEeEEEEEecCC
Q 038818 390 DNRFEIVAPRNFAVV-CFRVLPSASGLGDGKANE---GA--N-ELNRKLLESINASGQLYVSHGMVA-GIYFIRFAVGAT 461 (486)
Q Consensus 390 ~~~~~~~~~~~~~~v-~f~~~~~~~~~~~~~~~~---~~--~-~~~~~l~~~l~~~g~~~~~~~~~~-~~~~lR~~~~~~ 461 (486)
. ++.+ .++..+.+ .+.+..-.....+ .. .. + .....+.+.+.+.|+.+.++..+. +..++|+++.
T Consensus 429 ~-~~~~-~~~~~~~~l~~~l~~~~~~~~~---~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-- 501 (546)
T 2zy4_A 429 M-PPLR-DENAVDYYTLIDLQDVTAKLYG---EAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-- 501 (546)
T ss_dssp S-SCCC-CTTBCCSEEEEEHHHHHHHHHC---HHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS--
T ss_pred C-Cccc-CCCCeeEEEEEEHHHhhccccc---HHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec--
Confidence 3 3332 24455544 3443210000000 00 00 0 011235566677898655544332 3568999995
Q ss_pred CCcHHHHHHHHHHHHHHHHHHh
Q 038818 462 LTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~l~ 483 (486)
..++++++++++.|+++++++.
T Consensus 502 ~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 502 NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999887665
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=146.72 Aligned_cols=309 Identities=11% Similarity=0.024 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
..++.++.++++++++ ..+ ..++++||++|+..++.++|... . ++.+|+.....|.....+...
T Consensus 91 ~~~~~~l~~~l~~~~~-~~~-------~v~~~~~g~ea~~~al~~ar~~~--~------~~~vi~~~~~yhg~~~~~~~~ 154 (424)
T 2e7u_A 91 SPLEVALAKKVKRAYP-FVD-------LVRFVNSGTEATMSALRLARGYT--G------RPYIVKFRGNYHGHADGLLVE 154 (424)
T ss_dssp CHHHHHHHHHHHHHCT-TCC-------EEEEESSHHHHHHHHHHHHHHHH--C------CCEEEEETTCCCCCCGGGSEE
T ss_pred CHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh--C------CCEEEEECCCcCCCcHHHHHh
Confidence 4566677788888885 333 68999999999999999876432 0 344555554445322222111
Q ss_pred c-------------CCC---CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chH
Q 038818 192 A-------------GID---PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGP 251 (486)
Q Consensus 192 ~-------------G~g---~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~ 251 (486)
. |+. ...++.+|. .|+++|++++++.. ..+.+|+++...+++|.+-| +++
T Consensus 155 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~ 224 (424)
T 2e7u_A 155 AGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLKRRG---EEIAAIIFEPVVGNAGVLVPTEDFLKA 224 (424)
T ss_dssp CCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCHHHHHH
T ss_pred cCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHHhCC---CCEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence 1 210 013445543 38999999997531 12455666655556898877 999
Q ss_pred HHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCc
Q 038818 252 LCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNK 331 (486)
Q Consensus 252 I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~ 331 (486)
|.++ ++||++|++|++|+++ .....+.....++ ..|.+ +++|+++++..+|+++.+++ .. +.+.......
T Consensus 225 l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~~~~~~~-~~-~~~~~~~~~~--- 294 (424)
T 2e7u_A 225 LHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL-KPDLV--TLGKILGGGLPAAAYAGRRE-IM-EKVAPLGPVY--- 294 (424)
T ss_dssp HHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEE--EECGGGGTTSSCEEEEECHH-HH-TTBTTTSSBC---
T ss_pred HHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCC-Ccchh--hhhhhhhCCcceEEEEEcHH-HH-hhhcccCCcc---
Confidence 9999 9999999999999865 3221111111122 35665 55799997677898887653 32 2221100000
Q ss_pred cCCCCCccCCCCccccCCCCCCchHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCCeeEEEEE
Q 038818 332 ASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV-ANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRNFAVVCFR 407 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~ 407 (486)
...+-....+.+.+++..+.. +..+++.++..++.+++++.|+++ .++....++...++.+.
T Consensus 295 --------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~ 360 (424)
T 2e7u_A 295 --------------QAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVF 360 (424)
T ss_dssp --------------CCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEE
T ss_pred --------------cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEE
Confidence 000111233433333333311 111456777788888888888653 12311112334566666
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+.......-. ...........++.+.|.++|++ +.+.. ...+|++ ...++++++++++.|+++
T Consensus 361 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv~-v~~~~---~~~~~~~---~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 361 FTEGPVVTFQ-DARRTDTELFKRFFHGLLDRGIY-WPPSN---FEAAFLS---VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp SSSSCCCSHH-HHTTSCHHHHHHHHHHHHTTTEE-CCSSS---SSCEECC---TTCCHHHHHHHHHHHHHH
T ss_pred EeCCCCcchh-hhcccCHHHHHHHHHHHHHCCeE-EeccC---CCceEee---ccCCHHHHHHHHHHHHHh
Confidence 5431000000 00000023345678888888874 33321 1234443 467888999999999875
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=144.96 Aligned_cols=306 Identities=7% Similarity=-0.074 Sum_probs=188.3
Q ss_pred HHHHHHHHHhhc-CCC--ccccccCh-h---hHHHHHHHHHHHHHHcCC--CCCCccCCCcceEEcCCchHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGF-NVV--GFNWMSSP-A---ATELENIVMDWLGEMLKL--PKSFLFSGTGGGVIQGTTCEAILCTLAAA 157 (486)
Q Consensus 87 ~~~~~~~l~~~~-n~~--~~~~~~~~-~---~~~le~~~~~~l~~l~g~--~~~~~~~~~~~~~~t~ggt~a~~~al~~a 157 (486)
+..+.+.+...+ ..+ ...|.... + ..++++.+.+++.+..+. +++ .+++|+|+++++..++.+.
T Consensus 71 ~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~-------~iv~t~G~~~al~~~~~~l 143 (427)
T 2hox_A 71 EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDR-------YIVFGVGVTQLIHGLVISL 143 (427)
T ss_dssp HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTC-------EEEEESHHHHHHHHHHHHH
T ss_pred CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCC-------EEEEeCCHHHHHHHHHHHH
Confidence 344455555444 122 12254444 4 678999888888876543 333 6899999999987776655
Q ss_pred --------HHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 158 --------RDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 158 --------~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
.. +++.|+++...|.++...++..|. +++.+ .+|+++|++++++.
T Consensus 144 ~~~~~~~~~~-----------~Gd~Vlv~~P~y~~~~~~~~~~g~---~~~~~--------~~d~~~l~~~~~~~----- 196 (427)
T 2hox_A 144 SPNMTATPDA-----------PESKVVAHAPFYPVFREQTKYFDK---KGYVW--------AGNAANYVNVSNPE----- 196 (427)
T ss_dssp SCCTTTCTTS-----------CCEEEEECSSCCHHHHHHHHHSCB---TTEEE--------EEEGGGGTTCSCGG-----
T ss_pred hhccccccCC-----------CCCEEEEeCCCcccHHHHHHHcCC---eeeee--------cCCHHHHHHhhcCC-----
Confidence 22 678899999999999999999998 76533 46777888777543
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceE
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCC 308 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~ 308 (486)
+.+|+++.++|++|.+-+ + +++ +++.+.|.++.... ..... + ....+.+..+++|.++.| .-+|+
T Consensus 197 -~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~---~s~~~-~--~~~~~i~~~S~SK~~g~~G~RiG~ 262 (427)
T 2hox_A 197 -QYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPH---YTPIK-Y--KADEDILLFTMSKFTGHSGSRFGW 262 (427)
T ss_dssp -GEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTT---TSCCC-S--CBCCSEEEEEHHHHTSCGGGCCEE
T ss_pred -ceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCC---CCccc-c--CCCceEEEEeChhcCCCCCceEEE
Confidence 347788899999999988 4 233 56788887663210 01111 1 135688999999998744 34798
Q ss_pred EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--c-----------hHHHHHHHHH
Q 038818 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--G-----------VANLRNFLRS 375 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g-----------~~g~~~~~~~ 375 (486)
++++++.......... .+... ....+..+++...+ + .+.+++..++
T Consensus 263 ~~~~~~~l~~~l~~~~-~~~~~--------------------~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~ 321 (427)
T 2hox_A 263 ALIKDESVYNNLLNYM-TKNTE--------------------GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKK 321 (427)
T ss_dssp EEECCHHHHHHHHHHH-HHHTS--------------------SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHH
T ss_pred EEECCHHHHHHHHHHH-HhcCC--------------------CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHH
Confidence 8887665543222111 01000 01222222222222 1 1234556677
Q ss_pred HHHHHHHHHHHHhCCCCeEE--ec-----------CCCeeE-EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCc
Q 038818 376 HVRMAQLFQELVGGDNRFEI--VA-----------PRNFAV-VCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQ 440 (486)
Q Consensus 376 ~~~~a~~l~~~L~~~~~~~~--~~-----------~~~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~ 440 (486)
..++.+++.+.|++++++++ +. .|..+. +.+.+... ..++.+.+. +.|+
T Consensus 322 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------------~~~~~~~ll~~~gI 385 (427)
T 2hox_A 322 LRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------------EDKDCYQTFQNGRI 385 (427)
T ss_dssp HHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------------GGCSHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------------HHHHHHHHHHHCCE
Confidence 78889999999999888875 21 122233 34455321 112344443 5677
Q ss_pred EEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 441 LYVSHGMVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 441 ~~~~~~~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+..+..+. +.+++|+++.+ ++++++++++.|.++++
T Consensus 386 ~v~pg~~f~~~~~~~Ris~~~---~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 386 NTQNGVGFEASSRYVRLSLIK---TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp ECEEGGGGTSCTTEEEEECSS---CHHHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCCEEEEEecC---CHHHHHHHHHHHHHHHh
Confidence 544433332 35789999953 67799999999988763
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=135.85 Aligned_cols=307 Identities=12% Similarity=0.034 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
.+|.++.+.+++++..-+ ...|+++|||||..|+.++|... + ++.+|......|-.........
T Consensus 127 ~~~~~lae~l~~~~p~~~--------~v~f~~SGsEA~e~AiklAr~~t-------g-r~~ii~~~~~yHG~t~~~~~~~ 190 (454)
T 4ao9_A 127 LLEGRLARLICERFPQIE--------QLRFTNSGTEANLMALTAALHFT-------G-RRKIVVFSGGYHGGVLGFGARP 190 (454)
T ss_dssp SSHHHHHHHHHHHSTTCS--------EEEEESSHHHHHHHHHHHHHHHH-------T-CCEEEEETTCBCSTTCBBSSSB
T ss_pred HHHHHHHHHHHHhCCCCC--------EEEEeCchHHHHHHHHHHHHhcc-------c-CCeEEEEeCCcCCccccccccc
Confidence 345566677888774322 57899999999999999999763 1 2334445555564321111111
Q ss_pred CCC--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEEee
Q 038818 193 GID--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 193 G~g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lhvD 266 (486)
+-. ......+|. -|++++++.|++.. ....+|++.......|.+-| +++|.++|++||++|++|
T Consensus 191 ~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~---~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D 260 (454)
T 4ao9_A 191 SPTTVPFDFLVLPY-------NDAQTARAQIERHG---PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD 260 (454)
T ss_dssp CTTSCCSEEEEECT-------TCHHHHHHHHHHTG---GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCccCCCCcccCCC-------chHHHHHHHHhhcC---CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE
Confidence 110 012233332 38999999998643 23556777777777888877 999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 267 AAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
+++.|- ....+....-++ ..|.+++ .|.+++.++.|.+..+++ . .+.+......+..
T Consensus 261 EV~tGR--~G~~~a~e~~gv-~PDi~t~--gK~lggG~Piga~~~~~e-i-~~~~~~~~~~~~h---------------- 317 (454)
T 4ao9_A 261 EVMTSR--LAPHGLANKLGI-RSDLTTL--GKYIGGGMSFGAFGGRAD-V-MALFDPRTGPLAH---------------- 317 (454)
T ss_dssp CTTGGG--GSTTCHHHHHTC-CCSEEEE--EGGGGTTSSCEEEEECHH-H-HGGGCTTTCSCCC----------------
T ss_pred CCCcCC--CccccchhccCC-CCcEEEe--ccccCCCCcceeeeeHHH-H-HHHHhhccCCccc----------------
Confidence 998651 111111112234 4688765 588887778898888764 2 2233211111100
Q ss_pred cCCCCCCchHHH---HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC----CC-eEEecCCCeeEEEEEeecCCCCCCCC
Q 038818 347 TLSRRFRALKLW---LVLRSFGVANLRNFLRSHVRMAQLFQELVGGD----NR-FEIVAPRNFAVVCFRVLPSASGLGDG 418 (486)
Q Consensus 347 ~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~-~~~~~~~~~~~v~f~~~~~~~~~~~~ 418 (486)
..+-....+++. ++|+.+-.+ +..++..++.++|++.|+++ +- .++.+. ..++.+.+.....+....
T Consensus 318 ~~T~~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~--G~m~gi~f~~~~~~~~~~ 392 (454)
T 4ao9_A 318 SGTFNNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTGI--GSLMNAHFVQGDVRSSED 392 (454)
T ss_dssp CCTTTTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEE--TTEEEEESCCSCCCSGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeee--ceEEEEEEecCCCCCHHH
Confidence 111122344443 444444333 34566666777777776543 21 122211 234455443221110000
Q ss_pred CCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 419 KANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
. ..........+...|.++|++ +.+. + . +.+ ..-.|++|||+++++|++++.++.
T Consensus 393 ~-~~~d~~~~~~~~~~ll~~Gv~-~~p~---~--~--~~~-s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 393 L-AAVDGRLRQLLFFHLLNEDIY-SSPR---G--F--VVL-SLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp G-TTCCHHHHHHHHHHHHHTTEE-CCTT---C--E--EEC-CTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred H-HhhhHHHHHHHHHHHHHCCEE-EcCC---C--C--EEE-eCCCCHHHHHHHHHHHHHHHHhcc
Confidence 0 011134556777888899973 4332 1 2 233 234577899999999999987653
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-12 Score=130.70 Aligned_cols=335 Identities=12% Similarity=0.089 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.|.++...+-+ ..+|+++|||||..|+.+||....++ |..+ ...+|......|-...-++..
T Consensus 110 ~~~~~~lAe~L~~~~p~~~~-------~v~f~~sGsEA~e~AiKlAr~~~~~~-g~~~-r~~ii~~~~~yHG~t~~a~s~ 180 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDSG-------RVFYTNSGSEANDTMVKMLWFLHAAE-GKPQ-KRKILTRWNAYHGVTAVSASM 180 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSSC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCcc-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCCC-cceEEEeeceECCCccccccc
Confidence 34455677888888765433 57999999999999999998754332 2111 223344444556444444444
Q ss_pred cC--------CCCCCeEEEecCC----CCCccc-------CHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----
Q 038818 192 AG--------IDPKNFRAIKTTK----SSSFTL-------TPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---- 248 (486)
Q Consensus 192 ~G--------~g~~~v~~v~~d~----~~~~~~-------d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---- 248 (486)
.| .....+..++... ...+.. ..++|++.|.+.. ...+.+|++.-.....|.+-|
T Consensus 181 tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~EPiqg~gG~~~p~~~f 258 (473)
T 4e3q_A 181 TGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREG--ADTIAGFFAEPVMGAGGVIPPAKGY 258 (473)
T ss_dssp SCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTH
T ss_pred cccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhC--CCceEEEEeCCccCCCCceeCCHHH
Confidence 33 2222445554321 000111 1345555554431 223556777776667787754
Q ss_pred chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCccc
Q 038818 249 LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEF 327 (486)
Q Consensus 249 l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y 327 (486)
+++|.++|++||+.|++|+++.|+.-...-+....-++ ..|.+++ -|.+++. ++.|.++++++-. +.+......
T Consensus 259 l~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDi~t~--~K~l~gG~~Pl~av~~~~~i~--~~~~~~~~~ 333 (473)
T 4e3q_A 259 FQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF-TPDAIIS--SKNLTAGFFPMGAVILGPELS--KRLETAIEA 333 (473)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC-CCSEEEE--CGGGGTTSSCCEEEEECHHHH--HHHHHHHHH
T ss_pred HHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC-CCChHHh--cccccCCCCCcccccccHHHH--HHhcccccc
Confidence 89999999999999999999987643222222222233 5788776 4877765 6789998887521 122110000
Q ss_pred ccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCCeeEE
Q 038818 328 LRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRNFAVV 404 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v 404 (486)
... +....+-....+++.+++..+..-.-+++.++..++..+|.+.|+++ |.+.=+.. ...++
T Consensus 334 ~~~-------------~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~ 399 (473)
T 4e3q_A 334 IEE-------------FPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRG-IGFMW 399 (473)
T ss_dssp HSC-------------CCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEE
T ss_pred ccc-------------cccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-cceEE
Confidence 000 00011112344544444444321111234556666777777777543 44321100 11244
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
.+.+..+.... ...........++.+.+.++|.++ .+. + ..+|++. ....|++|||++++.|+++++++.+
T Consensus 400 gielv~~~~~~---~~~~~~~~~~~~~~~~~~~~Gll~-~~~---g-~~i~l~P-PL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 400 ALEAVKDKASK---TPFDGNLSVSERIANTCTDLGLIC-RPL---G-QSVVLCP-PFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp EEEECSBTTTT---BCCCGGGCHHHHHHHHHHHTTEEC-EEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcccc---ccccccHHHHHHHHHHHHHCCcEE-Eec---C-CEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45443221100 000111234567888888899753 221 2 3688875 3467899999999999999998876
Q ss_pred c
Q 038818 485 T 485 (486)
Q Consensus 485 ~ 485 (486)
+
T Consensus 471 e 471 (473)
T 4e3q_A 471 E 471 (473)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-11 Score=120.00 Aligned_cols=317 Identities=15% Similarity=0.069 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
+.+.++.+.|.+++..+.. ...+|+++|||||..|+..||... + +..+|......|-...-+....
T Consensus 107 ~~~~~lae~L~~~~p~~~~------~~v~f~~sGsEA~e~AlklAr~~t-------~-r~~ii~~~~~yHG~t~~als~t 172 (456)
T 4atq_A 107 EGYVAVTEQLNRLTPGDHA------KRTVLFNSGAEAVENAVKVARLAT-------G-RDAVVAFDHAYHGRTNLTMALT 172 (456)
T ss_dssp HHHHHHHHHHHHHSSCSSC------EEEEEESSHHHHHHHHHHHHHHHH-------C-CCEEEEETTCCCCSSHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCC------cEEEEeCChHHHHHHHHHHHhhhh-------c-CCeEEEEecccCCccccccccc
Confidence 3344566778888753321 146889999999999999998763 1 2334444445564444444433
Q ss_pred CCC----------CCCeEEEecCCC----CCcccCHHHHHHHHHHHHH--CCCccEEEEeecCCccccccCC----chHH
Q 038818 193 GID----------PKNFRAIKTTKS----SSFTLTPESLQAAIDLDIQ--AGLIPLFLCATVGTTAITTVDP----LGPL 252 (486)
Q Consensus 193 G~g----------~~~v~~v~~d~~----~~~~~d~~~L~~~l~~~~~--~g~~p~~vv~~~gtt~~G~idp----l~~I 252 (486)
+-. ...+..+|.... .....+.+.+++.++...+ .+..+..|++.-.....|.+-| +++|
T Consensus 173 ~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~l 252 (456)
T 4atq_A 173 AKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPAL 252 (456)
T ss_dssp CCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred cCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHH
Confidence 321 124666665310 0112345666665553221 2334667777776667787755 8999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
.++|++||+.|++|+++.|+.-...-+....-++ ..|.+++. |.+++.++.|.++.+++-. +.+ .+...
T Consensus 253 r~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~~av~~~~~i~--~~~--~~~~~---- 321 (456)
T 4atq_A 253 SEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPLSAITGRADLL--DAV--HPGGL---- 321 (456)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCEEEEEEHHHH--TTS--CTTSS----
T ss_pred HHHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCceeeEecHHHH--hcc--cccCC----
Confidence 9999999999999999987543222222222234 57888875 7777777889988886521 111 11110
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHHhCC----CC--eEEecCCC--e
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLR---SFGVANLRNFLRSHVRMAQLFQELVGGD----NR--FEIVAPRN--F 401 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~---~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~--~~~~~~~~--~ 401 (486)
..+-....+++.+++. .+-.++ +.++..++.++|.+.|+++ +. ..++.+.+ .
T Consensus 322 --------------~~Tf~gnpla~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~G 384 (456)
T 4atq_A 322 --------------GGTYGGNPVACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRG 384 (456)
T ss_dssp --------------CCSSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEET
T ss_pred --------------CCCCCCChHHHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecc
Confidence 1111224444444444 443333 4455566666666666442 21 11121111 2
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.++.+.+..+.. .....+...++.+.+.++|.++..... ....+|++. ....|+++||++++.|+++++.
T Consensus 385 l~~giel~~~~~-------~~~~~~~~~~v~~~~~~~Gvl~~~~g~--~~~~irl~P-pL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 385 AMLAIELVQPGS-------KEPNAELTKAVAAACLKEGVIILTCGT--YGNVIRLLP-PLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TEEEEEEBCTTS-------CCBCHHHHHHHHHHHHHTTEECEEECT--TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCCC-------CCcCHHHHHHHHHHHHHCCCEEEecCC--CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 244555543221 111245677888899999985433221 235689886 3467889999999999998764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=131.39 Aligned_cols=331 Identities=10% Similarity=0.008 Sum_probs=189.1
Q ss_pred HHHHHHhhcCCCc-cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 90 LGEMLSSGFNVVG-FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 90 ~~~~l~~~~n~~~-~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
+.++.......+. ..|....+..++.+.+.+++ +|-.... +....+-|.|||.|...++......+.
T Consensus 67 Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~~---~~~~~~qt~ggtga~~~a~~~l~~~~~------ 134 (420)
T 4h51_A 67 VRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVEL---ENLVAVQTLSGTGAVSLGAKLLTRVFD------ 134 (420)
T ss_dssp HHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---CG---GGEEEEEEEHHHHHHHHHHHHHTTTSC------
T ss_pred HHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCccc---cccceeeecCchHHHHHHHHHHHHhcC------
Confidence 4444444443332 34776667788877776654 3321110 011345688999888777665443211
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCe-EEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc-
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNF-RAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV- 246 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v-~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i- 246 (486)
.+++.|++++.++.+....++..|. +. ...+....+++.+|.+.+.+.++..++ ...+++.+.++||||..
T Consensus 135 -~pgd~V~ip~P~w~~y~~i~~~aG~---~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~~vll~~~p~NPtG~~~ 207 (420)
T 4h51_A 135 -AETTPIYLSDPTWPNHYGVVKAAGW---KNICTYAYYDPKTVSLNFEGMKKDILAAPD---GSVFILHQCAHNPTGVDP 207 (420)
T ss_dssp -TTTSCEEEEESCCTHHHHHHHHTTC---CCEEEEECEEGGGTEECHHHHHHHHHHSCS---SCEEEEESSSCTTTCCCC
T ss_pred -CCCCEEEEecCCchhHHHHHHHcCC---eEEEeeccccccccCCCHHHHHHHHhccCC---CcEEEEeCCCCCCCCCCC
Confidence 1677788999999999999999998 64 444443334678899999988875432 34567778899999988
Q ss_pred --CCchHHHHHHHHhCceEEeeccccchhccCccchh-hh-cCCC-CCC-ceeeccccccCCC-CcceEEEeeCchH--H
Q 038818 247 --DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRH-FI-DGIE-GAD-SFSLNAHKWFFTT-LDCCCLWVKNPNA--L 317 (486)
Q Consensus 247 --dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~-~~-~~~~-~aD-si~~~~hK~l~~p-~~~g~~~~~~~~~--~ 317 (486)
+.+++|+++|++++++++.|.+|.++......... .. ...+ ... .++.++.|.++.+ .-+|.+.+..+.. .
T Consensus 208 ~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~ 287 (420)
T 4h51_A 208 SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKR 287 (420)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHH
T ss_pred CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHH
Confidence 55889999999999999999999775432211100 00 0001 112 3455789987744 4588877654421 1
Q ss_pred HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 318 IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFG--------VANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 318 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
.+.... -..+.... .+ .............+. .+-++.+.++..++++.|.+.|++
T Consensus 288 ~~~~~~-l~~~~r~~---------------~s-~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~ 350 (420)
T 4h51_A 288 ADVKSV-MDSLIREE---------------YT-CPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLR 350 (420)
T ss_dssp HHHHHH-HHHHHHTT---------------TS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhhcc---------------cC-cchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111100 00000000 00 011222222222222 234566777788888999999987
Q ss_pred CC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHH
Q 038818 390 DN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDR 466 (486)
Q Consensus 390 ~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~ 466 (486)
.. .|..+ .++.++++|. +-. .+. .+.|.+.|++ +.+. | |+++. ..+++
T Consensus 351 ~g~~~~~~~i-~~q~GmF~~~--gls------------~e~----v~~L~e~~Vy-~~~~---g----Ris~A--gl~~~ 401 (420)
T 4h51_A 351 LQTPGSWEHV-INQIGMFSFL--GLS------------KAQ----CEYCQNHNIF-ITVS---G----RANMA--GLTHE 401 (420)
T ss_dssp TTCSSCCTHH-HHCCSSEEEC--CCC------------HHH----HHHHHHTTEE-CCTT---C----EEEGG--GCCHH
T ss_pred hCCCCCCCee-cCCCceEEec--CcC------------HHH----HHHHHhCCEE-EcCC---C----EEEec--cCCHH
Confidence 52 12222 2334666652 211 122 2345556753 3332 2 99985 45777
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 038818 467 HVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 467 did~~i~~l~~~~~~l~~~ 485 (486)
.|+++.++|.++++++-++
T Consensus 402 ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 402 TALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999887653
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-15 Score=150.35 Aligned_cols=310 Identities=11% Similarity=-0.052 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH--
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA-- 189 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~-- 189 (486)
...+.++.+.|+++++ ..+ ..++++|||+||..|+.++|... + ++.+|......|-+...+.
T Consensus 139 ~~~~~~Lae~L~~~~p-~~~-------~v~~~nSGseA~~~Aik~ar~~t-------g-r~~ii~~~~~yHG~~~~~~sg 202 (465)
T 2yky_A 139 TENEALFAEAVCDRFP-SID-------LVRFTNSGTEANLMALATATAIT-------G-RKTVLAFDGGYHGGLLNFASG 202 (465)
Confidence 4455666677788774 122 57899999999999999887531 0 2333444444554433332
Q ss_pred -HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEE
Q 038818 190 -QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVH 264 (486)
Q Consensus 190 -~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lh 264 (486)
...|++. .++.+|. .|+++|+++|++.. ..+.+|++....+++|.+-| +++|+++|++||++|+
T Consensus 203 ~~~~g~~~-~~~~~~~-------~d~~~l~~~l~~~~---~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI 271 (465)
T 2yky_A 203 HAPTNAPY-HVVLGVY-------NDVEGTADLLKRHG---HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLI 271 (465)
Confidence 1122211 2223332 37899999997421 12345666665666897766 9999999999999999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCC-cc--cccCccCCCCCccCC
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTN-PE--FLRNKASDSKQVVDY 341 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~-~~--y~~~~~~~~~~~~~~ 341 (486)
+|++|. + ...+.+.....++ ..|.++ ..|++++..+.|+++.+++ .. +.+... .+ +...
T Consensus 272 ~DEv~~-~-r~g~~~a~~~~gv-~pDi~t--~sK~lg~G~piG~v~~~~~-i~-~~l~~~~~g~~~~~~----------- 333 (465)
T 2yky_A 272 FDEVMT-S-RLSGGGAQEMLGI-SADLTT--LGKYIGGGMSFGAFGGRRD-LM-ERFDPARDGAFAHAG----------- 333 (465)
Confidence 999998 4 2111100001122 356654 5699998777888777654 22 122110 00 1100
Q ss_pred CCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEe--cCCCeeEEEEEeecCCCCCCCC
Q 038818 342 KDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN-RFEIV--APRNFAVVCFRVLPSASGLGDG 418 (486)
Q Consensus 342 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~--~~~~~~~v~f~~~~~~~~~~~~ 418 (486)
++ ++.+....+..+++..+-.+ ++.++..++.+++++.|+++. ...+. .+....++.+.+.....+.-.
T Consensus 334 ---T~-~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~- 405 (465)
T 2yky_A 334 ---TF-NNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAG- 405 (465)
Confidence 11 11111222223344444222 456777788888888887641 12221 123345666655421000000
Q ss_pred CCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 419 KANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
.......+...++.+.|.++|+++ .+..+. . ++ ...+++|||+++++|+++++++.
T Consensus 406 ~~~~~d~~~~~~~~~~ll~~GV~v-~p~~~~---~--~s---~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 406 DVRAADQQLKELFFFHMLRKGIYL-APRGMY---A--LS---LEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 000000123456777888889754 332221 1 33 35678899999999999887653
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=125.29 Aligned_cols=329 Identities=12% Similarity=-0.001 Sum_probs=170.9
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccC-------CCCeEEEecCCCchHHHHH
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGREN-------ISRLVVYGSDQTHSALQKA 188 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~-------~~~~~v~~s~~~H~s~~~a 188 (486)
.++.+.|+++++-+.. ...+|+++||+||..|+.+|+.++....|..+ .+..+|......|-+..-+
T Consensus 427 ~~Lae~L~~~~p~~~l------~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~ga 500 (831)
T 4a0g_A 427 LKCAELLLDGVGKGWA------SRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA 500 (831)
T ss_dssp HHHHHHHHHTTTTTTC------CEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHH
T ss_pred HHHHHHHHHhCCCCCC------CEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceee
Confidence 3455677777753211 15799999999999999999543333222210 1224454566677777777
Q ss_pred HHHcCCCC-----------C--------------CeEEEecCCC------CC-cccC------------------HHHHH
Q 038818 189 AQIAGIDP-----------K--------------NFRAIKTTKS------SS-FTLT------------------PESLQ 218 (486)
Q Consensus 189 ~~~~G~g~-----------~--------------~v~~v~~d~~------~~-~~~d------------------~~~L~ 218 (486)
+...|... . .+..++.... +. -.-| .++|+
T Consensus 501 ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 580 (831)
T 4a0g_A 501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLS 580 (831)
T ss_dssp HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHH
Confidence 77665310 0 1112222110 00 0001 25677
Q ss_pred HHHHHHH--HCCCccEEEEeecC-CccccccCC----chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCc
Q 038818 219 AAIDLDI--QAGLIPLFLCATVG-TTAITTVDP----LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADS 291 (486)
Q Consensus 219 ~~l~~~~--~~g~~p~~vv~~~g-tt~~G~idp----l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDs 291 (486)
+.|++.. ..+..+.+|++.-. ....|.+-| +++|.++|++||++|++|+++.|+......+.....++ ..|.
T Consensus 581 ~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDi 659 (831)
T 4a0g_A 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC-KPDI 659 (831)
T ss_dssp HHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-CCSE
T ss_pred HHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-CCcE
Confidence 7776421 12234556666654 566676654 99999999999999999999876533222221111233 4677
Q ss_pred eeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH---hchH
Q 038818 292 FSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS---FGVA 367 (486)
Q Consensus 292 i~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~---~g~~ 367 (486)
+| ..|.+++. .+.|.++++++ . .+.+...... ..+....+.....+++.+++.. +-.+
T Consensus 660 it--lsK~L~gG~~Plgav~~~~~-i-~~~~~~~~~~--------------~~~~hg~T~~g~Pla~Aaala~L~~i~~~ 721 (831)
T 4a0g_A 660 AC--FAKLLTGGMVPLAVTLATDA-V-FDSFSGDSKL--------------KALLHGHSYSAHAMGCATAAKAIQWFKDP 721 (831)
T ss_dssp EE--ECGGGGTTSSCCEEEEECHH-H-HHTTCSSCGG--------------GSCCCCCTTTTCHHHHHHHHHHHHHHHCT
T ss_pred EE--EecccccCccCcEEEEECHH-H-HHHHhccccc--------------ccceeecCCcccHHHHHHHHHHHHHHHhh
Confidence 76 46888765 36788888754 2 2233211100 0000011222334444444443 3222
Q ss_pred HHHHHHHHH-HHH----HHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEE
Q 038818 368 NLRNFLRSH-VRM----AQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLY 442 (486)
Q Consensus 368 g~~~~~~~~-~~~----a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 442 (486)
.+.+.+.+. ..+ .+.+.+.+.+.|.+.-+. ....++.+.+.....+ .........++.+.+.++|+++
T Consensus 722 ~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~------~~~~~~~a~~~~~~l~e~Gv~v 794 (831)
T 4a0g_A 722 ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVV-VIGTLFALELKADASN------SGYASLYAKSLLIMLREDGIFT 794 (831)
T ss_dssp TTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE-EETTEEEEEEC---------------CHHHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe-ecccEEEEEEecCccc------cccchHHHHHHHHHHHHCCcEE
Confidence 221111100 111 223455566666554332 2223455554322100 0000233557788888889743
Q ss_pred EeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 443 VSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 443 ~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+. ...+|++. .+.+|++|||++++.|.++++++
T Consensus 795 -~p~----g~~lrl~p-p~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 795 -RPL----GNVIYLMC-GPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -CCB----TTEEEEEC-CTTCCHHHHHHHHHHHHHHHTTT
T ss_pred -Eec----CCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 322 25799987 46779999999999999988765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 486 | ||||
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 1e-145 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 2e-51 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-34 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 1e-27 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 9e-07 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 2e-04 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 5e-04 | |
| d2j7ya1 | 236 | a.123.1.1 (A:217-452) Estrogen receptor beta {Rat | 0.001 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 422 bits (1086), Expect = e-145
Identities = 200/494 (40%), Positives = 296/494 (59%), Gaps = 28/494 (5%)
Query: 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDV 60
M++ +FRR+G ++D++ADY +E V V+PGYLR +P +AP P+ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61 QQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMD 120
++ I+PG+THW SPY+FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 121 WLGEMLKLPKSFLFSGTG--GGVIQGTTCEAILCTLAAARDQILNEIGREN--------I 170
WLG+ML+LP++FL G GGVIQG+ EA L L AAR +++ + + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 171 SRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230
+LV Y SDQ HS++++A I G+ K F + +LQ A++ D AGLI
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGVKLKAIP-----SDGKFAMRASALQEALERDKAAGLI 235
Query: 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD 290
P F+ AT+GTT+ + D L + I IW+HVDAAYAGSA ICPEFRH ++G+E AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 291 SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350
SF+ N HKW DC +WVK L A +P +L++ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLP 410
RFR+LK+W V R +GV L+ ++R HV+++ F+ V D RFE+ A +VCFR+
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRL-- 413
Query: 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470
+G++ LN LLE IN++ ++++ + G + +RFA+ + E HV
Sbjct: 414 -----------KGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL 462
Query: 471 AWKVVQEKLDGILA 484
AW+ ++ +LA
Sbjct: 463 AWEHIRGLAAELLA 476
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 178 bits (453), Expect = 2e-51
Identities = 55/459 (11%), Positives = 124/459 (27%), Gaps = 42/459 (9%)
Query: 17 IADYYRDVEKYPVLSQ-VEPGYLRKRLPESAPYNPEPIETILQDVQQHIV-PGITHWQSP 74
+ D ++ ++ + KR P + + Q + + G
Sbjct: 4 VTDLRSELLDSRFGAKSISTIAESKRFPL----HEMRDDVAFQIINDELYLDGNARQ--- 56
Query: 75 YYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLF 134
A F + +++ N + P + ++ ++ + ++ P
Sbjct: 57 -NLATF-CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNG 114
Query: 135 SGTGGGVIQGTTCEAILCTLAAARDQILNEI-GRENISRLVVYGSDQTHSALQKAAQIAG 193
G I + EA + A + + + + K A+
Sbjct: 115 QAVGTNTIGSS--EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWD 172
Query: 194 IDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLC 253
++ + + P+ + A D + + + T +
Sbjct: 173 VELREIPMRPGQ----LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKF 228
Query: 254 DIAKRYSIWVHVDAAYAGS-ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVK 312
I +H+DAA G A + + S S + HK+ L C + +
Sbjct: 229 QADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWR 288
Query: 313 NPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRAL-KLWLVLRSFGVANLRN 371
+ AL + L N ++L + I SR + + G
Sbjct: 289 DEEALPQELVFNVDYLG---------GQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTK 339
Query: 372 FLRSHVRMAQLFQELVGGDNRFEIVAPRNFA----VVCFRVLPSASGLGDGKANEGANEL 427
+ ++A + + +E + VCF++ +L
Sbjct: 340 VQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYT------LYDL 393
Query: 428 NRKLLES-INASGQLYVSHGMVAGIYFIRFAVGATLTED 465
+ +L + G I +R D
Sbjct: 394 SERLRLRGWQVPA--FTLGGEATDIVVMRIMCRRGFEMD 430
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 132 bits (333), Expect = 1e-34
Identities = 59/485 (12%), Positives = 142/485 (29%), Gaps = 79/485 (16%)
Query: 4 EEFRRQGHMIIDFIADYYRDVEKYPVL--SQVEPGYLRKRLPESAPYNPEPIETILQDVQ 61
+ ++G ++++ DV + + + ++ ++ L + + + ++ +
Sbjct: 12 KNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71
Query: 62 ---QHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIV 118
+ S + S G L + + L N +
Sbjct: 72 REARTYSKIHEELSSGFCHGIGRS-----GNLVDPQPKASG--------ASIMYALTNKI 118
Query: 119 MDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGS 178
++ + L L + + G +I L+AAR + VV
Sbjct: 119 LESFFKQLGLNVHAIATPISTG-------MSISLCLSAARKKY---------GSNVVIYP 162
Query: 179 DQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV 238
+H + KA G++ + + + E ++ AI +I+ G P + +T+
Sbjct: 163 YASHKSPIKAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRP-CVLSTL 219
Query: 239 GTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHK 298
D + + I + Y I ++ AYA E D+ ++ K
Sbjct: 220 TFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDK 278
Query: 299 WFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLW 358
T + ++ + + + + P + +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGR---------------------ASATPVVNTL 317
Query: 359 LVLRSFGVANLRNFLRSHVRMAQLFQEL---VGGDNRFEIVAPRNFAVVCFRVLPSASGL 415
+ L S G N +++ +L EL + + + + C V +
Sbjct: 318 VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEI 377
Query: 416 GDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVV 475
L ++ +G + G ++ + + AA V
Sbjct: 378 A-------------AKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIV----MNAAIGVR 420
Query: 476 QEKLD 480
E +
Sbjct: 421 TEDIV 425
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 112 bits (280), Expect = 1e-27
Identities = 47/373 (12%), Positives = 97/373 (26%), Gaps = 53/373 (14%)
Query: 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167
S ++ N ++ + ++ + V+ T ++ R +
Sbjct: 89 SSLLNKITNSLVLNVIKLAGVHSV-----ASCFVVPMATGMSLTLCFLTLRHK------- 136
Query: 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227
+ + K+ AG +P + ++++A I
Sbjct: 137 -RPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDE--LRTDLKAVEAKIQELGPE 193
Query: 228 GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE 287
++ L +T A D L L I Y I V+ AY + C +
Sbjct: 194 HIL--CLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251
Query: 288 GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347
D+F + K F + + N + P
Sbjct: 252 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR-------------------- 291
Query: 348 LSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQEL---VGGDNRFEIVAPRNFAVV 404
+ +L + + L S G + R L+ M + + ++ + +
Sbjct: 292 -ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPIS 350
Query: 405 CFRVLPSASGLGDGKANEGANELNR---------KLLESINASGQLYVSHGMVAGIYF-- 453
L + G D + + L L SG + A Y
Sbjct: 351 LAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCA 410
Query: 454 -IRFAVGATLTED 465
+ A +
Sbjct: 411 YLNAAAAIGMKMQ 423
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 48.8 bits (115), Expect = 9e-07
Identities = 48/391 (12%), Positives = 95/391 (24%), Gaps = 34/391 (8%)
Query: 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167
S + L V + G + G G + + L R+Q
Sbjct: 73 SRSYYALAESVKNIFGYQYTI---PTHQGRGA-------EQIYIPVLIKKREQEKGLDRS 122
Query: 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227
+ ++ + + + + K E L+ I+
Sbjct: 123 KMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN 182
Query: 228 GLIPLFLCATVGTTAITTVDP--LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--- 282
+ + T + V L + IAK+Y I V +D+A + R
Sbjct: 183 NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYK 242
Query: 283 --------IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASD 334
+ + AD +++A K + + + ++
Sbjct: 243 DWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPT 302
Query: 335 SKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE 394
+ ++ + WL R V L + L
Sbjct: 303 YGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI------GVVCQQAGGHAA 356
Query: 395 IVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFI 454
V A L + + A + +
Sbjct: 357 FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAEL--L 414
Query: 455 RFAVGA-TLTED--RHVIAAWKVVQEKLDGI 482
R + T T+ +I A+K V+E I
Sbjct: 415 RLTIPRATYTQTHMDFIIEAFKHVKENAANI 445
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 41.3 bits (96), Expect = 2e-04
Identities = 46/393 (11%), Positives = 93/393 (23%), Gaps = 50/393 (12%)
Query: 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167
S LE V + G K + QG E +L Q+ + G+
Sbjct: 74 SENFYHLEKTVKELFG-----FKHIVP------THQGRGAENLLS-------QLAIKPGQ 115
Query: 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227
+ + + A I + L I
Sbjct: 116 YVAGNMYFTTT--RFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE 173
Query: 228 --GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSAC-----ICPEFR 280
I L + + ++ + + ++A Y I + DA +
Sbjct: 174 NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYE 233
Query: 281 HFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340
+ + FS DC + L N E + + A + V +
Sbjct: 234 NVSIKDIVHEMFSYADGCTMSGKKDCLV-------NIGGFLCMNDEEMFSAAKELVVVYE 286
Query: 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400
L+ R + + + ++ L +L +
Sbjct: 287 GMPSYGGLAGRDMEAMAIGLREAMQYEYIE---HRVKQVRYLGDKLREAGVPIVEPTGGH 343
Query: 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM--------VAGIY 452
+ R A A + + + + + VS G +
Sbjct: 344 AVFLDARRFCPHLTQDQFPAQSLAASIYMET--GVRSMERGIVSAGRSKETGENHRPKLE 401
Query: 453 FIRFAVGA-TLTED--RHVIAAWKVVQEKLDGI 482
+R + T V + + + I
Sbjct: 402 TVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDI 434
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 19/208 (9%)
Query: 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167
S +L+ D E+ QG E IL + Q +
Sbjct: 74 SRNYYDLK----DKAKELFNYDYIIPAH-------QGRGAENILFPVLLKYKQKEGKAKN 122
Query: 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227
+ + H L I + K F +T + L+ I
Sbjct: 123 PVFISNFHFDTTAAHVELNGCKAINIVTEKAF-DSETYDDWKGDFDIKKLKENIAQHGAD 181
Query: 228 GLIPLFLCATVGTTAITTVDP--LGPLCDIAKRYSIWVHVDAAYAGSACI-----CPEFR 280
++ + T + V L + +IAK++ I+V +D+A P+++
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241
Query: 281 HFIDGIEGADSFSLNAHKWFFTTLDCCC 308
+ D + D
Sbjct: 242 NATIKEVIFDMYKYADALTMSAKKDPLL 269
|
| >d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Nuclear receptor ligand-binding domain superfamily: Nuclear receptor ligand-binding domain family: Nuclear receptor ligand-binding domain domain: Estrogen receptor beta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 0.001
Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 22/182 (12%)
Query: 211 TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYA 270
TL+PE L + ++A P + + + T + L +A + + + + A
Sbjct: 1 TLSPEQLVLTL---LEA--EPPNVLVSRPSMPFTEASMMMSLTKLADKELVHM-IGWA-- 52
Query: 271 GSACICPEFRHFIDGIEGADSFSLNAHKWF-FTTLDCCCLWVKNPNALIKALSTNPEFLR 329
P F D L W + + +P LI + + R
Sbjct: 53 ---KKIPGFVELSL----LDQVRLLESCWMEVLMVGLMWRSIDHPGKLI--FAPDLVLDR 103
Query: 330 NKASDSKQVVDYKDWQITLSRRFRALKL----WLVLRSFGVANLRNFLRSHVRMAQLFQE 385
++ + +++ D + + RFR LKL +L +++ + N + +
Sbjct: 104 DEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLASANQEAESSR 163
Query: 386 LV 387
+
Sbjct: 164 KL 165
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 486 | |||
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 100.0 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.97 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.97 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.97 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.95 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.94 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.93 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.92 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.92 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.92 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.91 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.91 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.91 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.9 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.9 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.9 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.9 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.89 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.89 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.87 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.86 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.86 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.85 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.85 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.85 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.84 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.83 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.83 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.83 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.82 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.81 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.8 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.8 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.79 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.79 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.79 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.79 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.78 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.78 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.78 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.78 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.77 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.76 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.75 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.74 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.73 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.73 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.72 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.72 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.72 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.72 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.71 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.71 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.69 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.68 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.68 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.64 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.64 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.62 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.61 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.59 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.59 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.57 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.57 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.55 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.55 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.54 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.53 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.53 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.52 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.51 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.49 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.47 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.45 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.44 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.43 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.41 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.37 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.35 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.34 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.25 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=3e-87 Score=681.39 Aligned_cols=466 Identities=43% Similarity=0.855 Sum_probs=427.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceec
Q 038818 1 MDSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~ 80 (486)
||+|+||+.+++++|.+.||+++++++||.|..+|++++..++..+|+.|.+.+++++++.+.+.++..+|+||+|+||+
T Consensus 1 m~~~~fr~~~~~~~d~i~d~~~~~~~~~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~ 80 (476)
T d1js3a_ 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCcc--CCCcceEEcCCchHHHHHHHHHHH
Q 038818 81 PSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLF--SGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~--~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
+++++++++++++++..+|+|...|+.+|.++++|+++++|+++++|+|+.+.+ .+.++|++|+|||+||++|+++||
T Consensus 81 ~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR 160 (476)
T d1js3a_ 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (476)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986533 345789999999999999999999
Q ss_pred HHHHHHcccc--C------CCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 159 DQILNEIGRE--N------ISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 159 ~~~~~~~~~~--~------~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
++..++.+.. | .++.++|+|+.+|||+.|+|.++|+ .++.||+|+ +++||+++|+++|++++++|..
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl---~~~~v~~d~--~~~md~~~L~~~i~~~~~~g~~ 235 (476)
T d1js3a_ 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDG--KFAMRASALQEALERDKAAGLI 235 (476)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCT--TSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCc---eEEEeccCC--CCCcCHHHHHHHHHHHHhcCCC
Confidence 9876543211 1 1478999999999999999999999 799999985 6799999999999999999999
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
|++|++++|||.+|.+|||++|++||++||+|+||||||||++.+++++++.+.+++.|||+++|+|||+++|++||+++
T Consensus 236 p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l 315 (476)
T d1js3a_ 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315 (476)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred cEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
+|++..+...+...+.|+...........++.++++++||++.++++|++++.+|.+|+++++++..+++++|.+.|++.
T Consensus 316 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~ 395 (476)
T d1js3a_ 316 VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD 395 (476)
T ss_dssp ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99998887788878888766544445667788999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHH
Q 038818 391 NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~ 470 (486)
|+|+++.+|.+++|||++.+. +.+++++.+++.++|.++++++.++|+.++|++++|+.|+++|||.
T Consensus 396 ~~fel~~~p~l~iV~Fr~~~~-------------d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~ 462 (476)
T d1js3a_ 396 PRFEVCAEVTLGLVCFRLKGS-------------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL 462 (476)
T ss_dssp TTEEECSCCCSSEEEEEESSC-------------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH
T ss_pred CCeEEECCCceEEEEEEccCC-------------hHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999764 6788999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 038818 471 AWKVVQEKLDGILA 484 (486)
Q Consensus 471 ~i~~l~~~~~~l~~ 484 (486)
+++.|++++++|++
T Consensus 463 ~~~~i~~~a~~lla 476 (476)
T d1js3a_ 463 AWEHIRGLAAELLA 476 (476)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-55 Score=441.22 Aligned_cols=406 Identities=15% Similarity=0.165 Sum_probs=324.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhc-CCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHH
Q 038818 44 ESAPYNPEPIETILQDVQQHIV-PGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWL 122 (486)
Q Consensus 44 ~~~p~~~~~~~~il~~l~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l 122 (486)
..+|++|.+.+++.+.+++.+. ++..++ ++..|+.+. .+..+.+++...+|.|...++.+|.++++|.++++|+
T Consensus 28 ~~~p~~~~~~~~~~~~i~d~l~~dg~~~~---n~asf~~t~--~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~l 102 (450)
T d1pmma_ 28 KRFPLHEMRDDVAFQIINDELYLDGNARQ---NLATFCQTW--DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMV 102 (450)
T ss_dssp SSCCCSCCCHHHHHHHHHHHGGGSCCGGG---BCSCCSCCC--CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHH
T ss_pred ccCCccCCCHHHHHHHHHHHhccCCCccc---cccccccCC--CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence 3589999999999999987654 332222 344455432 2345789999999999999999999999999999999
Q ss_pred HHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCC-CCeEEEecCCCchHHHHHHHHcCCCCCCeEE
Q 038818 123 GEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENI-SRLVVYGSDQTHSALQKAAQIAGIDPKNFRA 201 (486)
Q Consensus 123 ~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~-~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~ 201 (486)
++|+|+|..+ .+...|++|+|||+||++|+.++|.++.++....|. ....++++..+|+|+.|+|+++|+ +++.
T Consensus 103 a~L~~~p~~~--~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi---~~~~ 177 (450)
T d1pmma_ 103 ADLWHAPAPK--NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDV---ELRE 177 (450)
T ss_dssp HHHTTCCCCT--TSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTC---EEEE
T ss_pred HHHhCCCccc--cCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCC---CceE
Confidence 9999998643 123469999999999999999999987655322221 334566788899999999999999 9999
Q ss_pred EecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHH------HhCceEEeeccccchhc-
Q 038818 202 IKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAK------RYSIWVHVDAAYAGSAC- 274 (486)
Q Consensus 202 v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~------~~g~~lhvD~a~g~~~~- 274 (486)
||+++ ++++||+++|+++++++ +++|++++|+|.+|.+||+++|+++|+ ++|+|+|||||+||+.+
T Consensus 178 v~~~~-~~~~~d~~~L~~~i~~~------t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p 250 (450)
T d1pmma_ 178 IPMRP-GQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP 250 (450)
T ss_dssp CCCBT-TBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred eeecC-CCCcCcHHHHHHHhhhC------ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceee
Confidence 99986 36899999999998765 468999999999999999999998864 57999999999988765
Q ss_pred cCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC-
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR- 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~- 353 (486)
+++..+....+++++||+++|+|||+++|+|||++++|++..+...+...+.|+... +.+++++++|++.
T Consensus 251 ~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~---------~~~~~~~~sr~~~~ 321 (450)
T d1pmma_ 251 FVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ---------IGTFAINFSRPAGQ 321 (450)
T ss_dssp HHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEE---------EEECCSCCSCBSHH
T ss_pred eechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCC---------cCCCcccCccchHH
Confidence 344445556688999999999999999999999999999877665666667776432 3456889999864
Q ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC----CCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 354 ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP----RNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 354 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
++++|+.++.+|.+|+++++++..+++++|.+.|+++++++++.+ +..++|||++.+... ...+ ..
T Consensus 322 ~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~--------~~~~--~~ 391 (450)
T d1pmma_ 322 VIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED--------PGYT--LY 391 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCC--------CSSC--HH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCccc--------CCCC--HH
Confidence 567999999999999999999999999999999999999999753 457889999986431 1111 22
Q ss_pred HHHHHHHhcCcEEEe---eeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhhcC
Q 038818 430 KLLESINASGQLYVS---HGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILATS 486 (486)
Q Consensus 430 ~l~~~l~~~g~~~~~---~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~~~ 486 (486)
.+.++|.++|+.+.+ +....+..++|++++ +++|++++|+|++.|+++++++.+++
T Consensus 392 ~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~-~~~t~e~~d~lv~dl~~~v~~l~~~p 450 (450)
T d1pmma_ 392 DLSERLRLRGWQVPAFTLGGEATDIVVMRIMCR-RGFEMDFAELLLEDYKASLKYLSDHP 450 (450)
T ss_dssp HHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCeeeccCcCCCcCCcEEEEEEcc-CCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 456677788974222 222345678999985 68888899999999999999998764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-37 Score=314.51 Aligned_cols=390 Identities=12% Similarity=0.028 Sum_probs=262.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCC-HHHHHHHHHHhhcCCC---------ccccccChhhHH
Q 038818 44 ESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGS-IAGFLGEMLSSGFNVV---------GFNWMSSPAATE 113 (486)
Q Consensus 44 ~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~l~~~~n~~---------~~~~~~~~~~~~ 113 (486)
.++|++|.+.++|++.+.++...+... ++.+.+....+.. +..++.+....+...+ ......++....
T Consensus 17 ~~lP~~G~~~~~i~~~l~~~~~~d~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (445)
T d3bc8a1 17 GKCPEDGWDESTLELFLHELAVMDSNN--FLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNK 94 (445)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGG--CTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CCSBHHHHHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHHHhccCCc--ccCcccccccCccccHHHHHHHHHhhccccccCcchhhhhhhhccchHHHH
Confidence 367999999999999998764333222 2233222111111 2222222211111111 011122345678
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
+|.++.+|+++++|++... .|++|+|||++++.++..++... ..++++|++|..+|+|+.+++.++|
T Consensus 95 le~~~~~~~~~l~g~~~~~------~~~~~~~~t~~~~~~~l~a~~~~-------~~~~~~vi~~~~~H~s~~~a~~~~g 161 (445)
T d3bc8a1 95 ITNSLVLNVIKLAGVHSVA------SCFVVPMATGMSLTLCFLTLRHK-------RPKAKYIIWPRIDQKSCFKSMVTAG 161 (445)
T ss_dssp HHHHHHHHHHHHHTCTTCC------EEEEESSCHHHHHHHHHHHHHHH-------CTTCCEEEEECCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccc------CccccccchHHHHHHHHHHHHHh-------CCCCCEEEEcCcccHHHHHHHHHcC
Confidence 9999999999999998753 78999999976665554444322 1256789999999999999999999
Q ss_pred CCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 194 IDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 194 ~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+ .++.|+... ++++.+|+++|+++|++.... .+++|+++++++++|.++|+++|+++|++||+|+|||+|+|++
T Consensus 162 ~---~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~ 236 (445)
T d3bc8a1 162 F---EPVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ 236 (445)
T ss_dssp C---EEEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred C---eeEEEEeeccCcccccCHHHHHHHHHhcccc--CeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhh
Confidence 9 777775321 246899999999999886543 2578999999999999999999999999999999999999987
Q ss_pred hccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC
Q 038818 273 ACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF 352 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~ 352 (486)
..++........++.++|++++++||++++|+|+|++++++......... .|.. .+...
T Consensus 237 ~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~---~~~~------------------~~~~~ 295 (445)
T d3bc8a1 237 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPG------------------RASAS 295 (445)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCS------------------CBCSH
T ss_pred hhhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHH---HHhh------------------cccCc
Confidence 66554443333345679999999999999999999999998866543211 1110 11123
Q ss_pred CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCe-eEEEEEeecCCCCCCCCCCccchHHHH
Q 038818 353 RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNF-AVVCFRVLPSASGLGDGKANEGANELN 428 (486)
Q Consensus 353 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~ 428 (486)
..+.+|.++..+|.+++.+..++..++++++.+.|.++. +..++..+.. ...++.+..... .......+
T Consensus 296 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~-----~~~~~~~~-- 368 (445)
T d3bc8a1 296 PSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG-----HHDKAVTQ-- 368 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS-----SSSCHHHH--
T ss_pred chHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc-----cCCCCHHH--
Confidence 457889999999999999999999999999999987642 4555443332 233333322210 00122223
Q ss_pred HHHHHHHHhcCcE---EEeee--------eE---------CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 429 RKLLESINASGQL---YVSHG--------MV---------AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 429 ~~l~~~l~~~g~~---~~~~~--------~~---------~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
+...|...|+. +..+. .+ ....++|+++ +..+|++|||+++++|+++++++.+
T Consensus 369 --l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~-~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 369 --LGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAA-AIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp --HHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeC-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33344444431 11110 01 0134688887 5788999999999999999988764
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=100.00 E-value=1e-36 Score=308.12 Aligned_cols=401 Identities=14% Similarity=0.109 Sum_probs=282.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecC
Q 038818 2 DSEEFRRQGHMIIDFIADYYRDVEKYPVLSQVEPGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFP 81 (486)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~ 81 (486)
-++++++..+.+++...+.++++.+. ..+|++|.+.++|++.++++...+...+......|...
T Consensus 10 ip~~~~~~~~~~~~~~~~~~~~l~~~----------------~~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~~ 73 (434)
T d2z67a1 10 IPKNMEKRGELVLNEYLKEIEDVFNH----------------RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGERE 73 (434)
T ss_dssp SCHHHHHHHHHHHHHHTHHHHHHHHH----------------CSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhc----------------ccCCCCCCCHHHHHHHHHHHHhcCccccccccccccee
Confidence 35678888888888888777665421 24688899999999999987655555554443344322
Q ss_pred CCCCHHHHHHHHH---HhhcCCC--cccc----ccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHH
Q 038818 82 SSGSIAGFLGEML---SSGFNVV--GFNW----MSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILC 152 (486)
Q Consensus 82 ~~~~~~~~~~~~l---~~~~n~~--~~~~----~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 152 (486)
+.. ++..+.... ......+ ...| ..+.....+|.++..|+++++|.+.. ...+.+||++++..
T Consensus 74 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~t~~~~~~ 145 (434)
T d2z67a1 74 ART-YSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH-------AIATPISTGMSISL 145 (434)
T ss_dssp CCC-SCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-------EEEESSCHHHHHHH
T ss_pred ccc-chhHHhhcccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCcc-------eeecCcHHHHHHHH
Confidence 211 122222211 1111111 1111 12334578999999999999999875 44555565566666
Q ss_pred HHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 153 TLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 153 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
++.+.|... ++.+|++|...|+|+.+++..+|+ .++.|++.. ++++.+|+++|+++|+++...+..+
T Consensus 146 ~l~a~r~~~---------~~~~vi~s~~~H~s~~k~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 213 (434)
T d2z67a1 146 CLSAARKKY---------GSNVVIYPYASHKSPIKAVSFVGM---NMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP 213 (434)
T ss_dssp HHHHHHHHH---------CCCEEEEECCCCHHHHHHHHHTTC---EEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhh---------cCceEEEeccCCHHHHHHHHHhCC---cceEEEeecCCCccCCCHHHHHHHHHhhhhcCCce
Confidence 666655432 677899999999999999999999 777665321 2367999999999999987766555
Q ss_pred EEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEe
Q 038818 232 LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWV 311 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~ 311 (486)
+|+++.+++..|.++|+++|+++|++||+|+|||+|||++..+.+...... +..++|++++++||++++|.|+|++++
T Consensus 214 -~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~-~~~~~D~~~~s~hK~l~~~~g~~~~~~ 291 (434)
T d2z67a1 214 -CVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGGGLVYS 291 (434)
T ss_dssp -EEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH-HTSCCSEEEEEHHHHHCCCSSCEEEEE
T ss_pred -EEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccc-ccCCcceEEEcCccccccCCCcccccc
Confidence 699999999999999999999999999999999999987665544333222 234899999999999999999999999
Q ss_pred eCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC-
Q 038818 312 KNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD- 390 (486)
Q Consensus 312 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~- 390 (486)
+++..+++.....+ .++....+..+|+++..+|.+|+.++.++..++++++++.|+++
T Consensus 292 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~ 350 (434)
T d2z67a1 292 TDAEFIKEISLSYP---------------------GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS 350 (434)
T ss_dssp SCHHHHHHHHTTSC---------------------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcc---------------------cccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhh
Confidence 99876553321110 11223356788999999999999999999999999999998764
Q ss_pred --CCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE---EEeeee--------ECCEeEEEEE
Q 038818 391 --NRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL---YVSHGM--------VAGIYFIRFA 457 (486)
Q Consensus 391 --~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~--------~~~~~~lR~~ 457 (486)
.++.++..+....+++..... ..++...|.+.|+. +..+.. .....++|++
T Consensus 351 ~~~g~~ll~~~~~~~~~~~~~~~----------------~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~ 414 (434)
T d2z67a1 351 KKTGGKFLDVESPIASCISVNSD----------------PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMN 414 (434)
T ss_dssp HHSSCCBCCCCCSSEEEEECSSC----------------HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEE
T ss_pred hhcCceecCCCCCceeeeecCCC----------------HHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEe
Confidence 366776666656666665432 23455566666652 222111 1125679998
Q ss_pred ecCCCCcHHHHHHHHHHHHHH
Q 038818 458 VGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 458 ~~~~~tt~~did~~i~~l~~~ 478 (486)
+ +..+|++|||+++++|+++
T Consensus 415 ~-s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 415 A-AIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp C-CTTCCHHHHHHHHHHHHTC
T ss_pred c-CCCCCHHHHHHHHHHHhcC
Confidence 7 5688999999999999863
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.8e-29 Score=251.95 Aligned_cols=355 Identities=17% Similarity=0.110 Sum_probs=241.6
Q ss_pred CcceecCCCCCHHHHHH---HHHHhh-cCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHH
Q 038818 75 YYFAYFPSSGSIAGFLG---EMLSSG-FNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAI 150 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~---~~l~~~-~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~ 150 (486)
-||++-.+++.+..++. +++... .|++...+..+....+.-.++++.+++++|..++. ..++++++|+++
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~------~i~~~~~~T~~~ 97 (405)
T d1jf9a_ 24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE------ELVFVRGTTEGI 97 (405)
T ss_dssp EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGG------GEEEESSHHHHH
T ss_pred EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcc------cccccCcHHHHH
Confidence 37777655555444432 333322 23332223333334455567899999999975432 789999999998
Q ss_pred HHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHH
Q 038818 151 LCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ 226 (486)
Q Consensus 151 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~ 226 (486)
...+........ .++..|+++...|+| +...++..|+ +++.+|+++ ++.+|++.+++++++++
T Consensus 98 ~~~~~~~~~~~~-------~~g~~il~~~~e~~s~~~~~~~~a~~~g~---~v~~~~~~~--~g~~~~~~~~~~i~~~t- 164 (405)
T d1jf9a_ 98 NLVANSWGNSNV-------RAGDNIIISQMEHHANIVPWQMLCARVGA---ELRVIPLNP--DGTLQLETLPTLFDEKT- 164 (405)
T ss_dssp HHHHHHHHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHTC---EEEEECBCT--TSCBCGGGHHHHCCTTE-
T ss_pred HHHHhccccccc-------CCCCEEEEEeCcccchHHHHHHHHHHcCc---EEEEECCCC--CCcCCHHHHHHhccCCc-
Confidence 776655332211 156788899999988 4455567799 999999986 56999999998887654
Q ss_pred CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc
Q 038818 227 AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 227 ~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~ 306 (486)
.+|++++.++.+|.+.|+++|+++||++|+++|||++++.+....+- ... ++|++++++|||+ +|.|+
T Consensus 165 -----~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~-~~~-----~~D~~~~s~hK~~-Gp~G~ 232 (405)
T d1jf9a_ 165 -----RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDV-QAL-----DCDFYVFSGHKLY-GPTGI 232 (405)
T ss_dssp -----EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH-HHH-----TCSEEEEEGGGTT-SCSSC
T ss_pred -----EEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccch-hhc-----CCceeeccccccc-cCCCc
Confidence 48999999999999999999999999999999999999988776542 222 7999999999996 69999
Q ss_pred eEEEeeCchHHHHHhcCCcccccCc-c---CC--CCCccCCCCccccCCCC-C-CchHHHHHHHHhchHHHHHHHHHHHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNK-A---SD--SKQVVDYKDWQITLSRR-F-RALKLWLVLRSFGVANLRNFLRSHVR 378 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~-~---~~--~~~~~~~~~~~~~~sr~-~-~~l~~~~~l~~~g~~g~~~~~~~~~~ 378 (486)
|+++++++.. . ..++..... . .. ...........++.|.+ . ..+++..+++.+...|++.+.++...
T Consensus 233 g~l~v~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~ 307 (405)
T d1jf9a_ 233 GILYVKEALL-Q----EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 307 (405)
T ss_dssp EEEEECHHHH-T----TCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred eeeeechhhh-c----ccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 9999986532 1 111111110 0 00 00000111112222222 1 22455556666555677888888999
Q ss_pred HHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee---------E
Q 038818 379 MAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM---------V 448 (486)
Q Consensus 379 ~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---------~ 448 (486)
+++++.+.++..+...+..+. ..++++|.+.... ...+...|.+.|+. ++.+. .
T Consensus 308 L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~---------------~~~~~~~L~~~gI~-v~~G~~c~~~~~~~~ 371 (405)
T d1jf9a_ 308 LMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH---------------AYDVGSFLDNYGIA-VRTGHHCAMPLMAYY 371 (405)
T ss_dssp HHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCC---------------HHHHHHHHHHTTEE-CEEECTTCHHHHHHT
T ss_pred HHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCC---------------HHHHHHHHHHCCcE-EEccchhhhhHHHhc
Confidence 999999999999877776543 4688999886432 23455566667764 33221 1
Q ss_pred CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 449 AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 449 ~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
...+++|+|+ ++++|++|||+++++|+++.+-+
T Consensus 372 ~~~g~iRiS~-~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 372 NVPAMCRASL-AMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp TCSCEEEEEC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 2246799998 57888899999999999988754
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.97 E-value=1.3e-30 Score=258.40 Aligned_cols=350 Identities=13% Similarity=0.097 Sum_probs=230.9
Q ss_pred CcceecCCCCCHHHHH---HHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 75 YYFAYFPSSGSIAGFL---GEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~---~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
-||++-..++.+..++ .+++....+.+...+..+.....+..++++.+++++|.+++ .+++|+|||+|+.
T Consensus 9 ~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-------~i~~~~g~t~a~~ 81 (381)
T d1elua_ 9 TYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-------TITITDNVTTGCD 81 (381)
T ss_dssp EECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-------GEEEESSHHHHHH
T ss_pred EEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc-------cEEEECChHHHhh
Confidence 4777665554444332 33333333333334444555566677889999999999765 7899999999987
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~ 227 (486)
.++...+.. ++..|+++...|+|+..+ ++..|+ +++.+|.+.......+.+.+++++++.
T Consensus 82 ~~~~~l~~~----------~g~~i~~~~~~~~s~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~l~~~i~~~--- 145 (381)
T d1elua_ 82 IVLWGLDWH----------QGDEILLTDCEHPGIIAIVQAIAARFGI---TYRFFPVAATLNQGDAAAVLANHLGPK--- 145 (381)
T ss_dssp HHHHHSCCC----------TTCEEEEETTCCHHHHHHHHHHHHHHCC---EEEEECCGGGSSSSCHHHHHHTTCCTT---
T ss_pred hcchhhhhc----------CCceEEEeccccceeeeccccccccccc---cccccccccccccchHHHHHHhhhccc---
Confidence 776654322 677788899999876554 455688 999999864321122244455444433
Q ss_pred CCccEEEEeecCCccccccCCchHHHHHHHHh----CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC
Q 038818 228 GLIPLFLCATVGTTAITTVDPLGPLCDIAKRY----SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT 303 (486)
Q Consensus 228 g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~----g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p 303 (486)
+.+|++++++|++|.+.|+++|.++|+++ ++++|+|++++.+....+- .. .++|++++++|||+++|
T Consensus 146 ---t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~-~~-----~~~D~~~~s~~K~~~~p 216 (381)
T d1elua_ 146 ---TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF-SR-----LEVDYYAFTGHKWFAGP 216 (381)
T ss_dssp ---EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCT-TT-----SCCSEEEEESSSTTCCC
T ss_pred ---ccccccccccccccccchhhHHHHHHhhcccccccccccccccccccccccc-cc-----ccccccccccccccccc
Confidence 45899999999999999999999999984 6999999999877654432 11 27999999999999999
Q ss_pred CcceEEEeeCchHHHHHhcCCcccccCccCCCCCc-----cCCCCccccCCCCC--CchHHHHHHHHhchHHH-HHHHHH
Q 038818 304 LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV-----VDYKDWQITLSRRF--RALKLWLVLRSFGVANL-RNFLRS 375 (486)
Q Consensus 304 ~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-----~~~~~~~~~~sr~~--~~l~~~~~l~~~g~~g~-~~~~~~ 375 (486)
.|+|++++++.... ...+.+........... .......+..+.+. ..+++..++..+...|. +.+.++
T Consensus 217 ~G~g~l~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~ 292 (381)
T d1elua_ 217 AGVGGLYIHGDCLG----EINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQA 292 (381)
T ss_dssp TTCEEEEECTTTGG----GCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred chhhHHHhhHHHHH----hcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhh
Confidence 99999999876431 12222221110000000 00000001111111 11344455555444443 455688
Q ss_pred HHHHHHHHHHHHhCCCCeEEecC--CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeE
Q 038818 376 HVRMAQLFQELVGGDNRFEIVAP--RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYF 453 (486)
Q Consensus 376 ~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~ 453 (486)
..++++++.+.|+++|+++++.+ +..++++|.+.+.. . .+.+.+.|.+.|+. +. .....++
T Consensus 293 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~----------~----~~~i~~~L~~~gi~-v~--~~~~~~~ 355 (381)
T d1elua_ 293 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPL----------G----HRAIVQKLEEQRIY-LR--TIADPDC 355 (381)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSS----------C----HHHHHHHHHHTTEE-CE--EETTTTE
T ss_pred hhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCC----------C----HHHHHHHHHhCCcE-EE--ecCCCCE
Confidence 88999999999999999999754 46779999886531 0 23456667777863 32 2344578
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
+|+|+ +..+|++|||++++.|+++
T Consensus 356 lRis~-~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 356 IRACC-HYITDEEEINHLLARLADF 379 (381)
T ss_dssp EEEEC-CTTCCHHHHHHHHHHHTTC
T ss_pred EEEec-CCCCCHHHHHHHHHHHHhh
Confidence 99998 4788999999999999875
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.97 E-value=3.5e-29 Score=250.03 Aligned_cols=354 Identities=13% Similarity=0.087 Sum_probs=242.7
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc-----CCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF-----NVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
-||++..+++.+..++. .+..++ |++...+..+....++-+++++.+++++|.+... .+++++++|++
T Consensus 24 iYld~a~~~~~p~~v~~-~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~------~i~~~~~tt~~ 96 (408)
T d1t3ia_ 24 VYLDNAATSQKPRAVLE-KLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR------EIVYTRNATEA 96 (408)
T ss_dssp EECBTTTCCCCCHHHHH-HHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGG------GEEEESSHHHH
T ss_pred EEeeCccccCCCHHHHH-HHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcc------cEEeecchHHH
Confidence 48888777665555443 333322 2222233444445556667899999999997542 67888888888
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH----HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL----QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~----~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~ 225 (486)
+...+........ .++..|+++...|.++ ...++..|+ .++.+|.+. ++..+.+.|++++++++
T Consensus 97 ~n~~~~~~~~~~~-------~~g~~il~s~~e~~s~~~~~~~~~~~~g~---~v~~~~~~~--~~~~~~~~l~~~~~~~t 164 (408)
T d1t3ia_ 97 INLVAYSWGMNNL-------KAGDEIITTVMEHHSNLVPWQMVAAKTGA---VLKFVQLDE--QESFDLEHFKTLLSEKT 164 (408)
T ss_dssp HHHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHCC---EEEEECBCT--TSSBCHHHHHHHCCTTE
T ss_pred HHHHHhhcccccc-------CCCCEEEeecccchhhhhhhhhhhhccCc---eEeeeeccc--cccccHHHhhhccCCCc
Confidence 7655544322111 1567888899999874 445566788 999999875 55889999999887654
Q ss_pred HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
.+|++++.++.+|.+.|+++|+++|+++|+++||||+++.+....+- ... ++|++++++|||+ +|.|
T Consensus 165 ------~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~-~~~-----~~D~~~~s~hK~~-gp~G 231 (408)
T d1t3ia_ 165 ------KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDV-QLI-----DCDWLVASGHKMC-APTG 231 (408)
T ss_dssp ------EEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH-HHH-----TCSEEEEEGGGTT-SCTT
T ss_pred ------eEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccc-ccc-----CCceEEecccccc-CCCC
Confidence 48999999999999999999999999999999999999988876642 222 7999999999995 6889
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccCC-----CCCccCCCCccccCCCC-C-CchHHHHHHHHhchHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKASD-----SKQVVDYKDWQITLSRR-F-RALKLWLVLRSFGVANLRNFLRSHVR 378 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~~-----~~~~~~~~~~~~~~sr~-~-~~l~~~~~l~~~g~~g~~~~~~~~~~ 378 (486)
+|+++++++.... .+++..+.... ...........++.|.+ + ..+++-.++..+...|.+++.++...
T Consensus 232 ~g~l~v~~~~~~~-----~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~ 306 (408)
T d1t3ia_ 232 IGFLYGKEEILEA-----MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 306 (408)
T ss_dssp CEEEEECHHHHHH-----SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccccccchhhhhc-----CCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999998764321 12232221100 00000011112232222 1 12344455555555677788888899
Q ss_pred HHHHHHHHHhCCCCeEEecCC-----CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee------
Q 038818 379 MAQLFQELVGGDNRFEIVAPR-----NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM------ 447 (486)
Q Consensus 379 ~a~~l~~~L~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------ 447 (486)
+++++.+.+.+.+++.++.+. ..++++|.+.+.. ...+...|.+.|+. ++.+.
T Consensus 307 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~---------------~~~v~~~L~~~gI~-v~~G~~c~~~~ 370 (408)
T d1t3ia_ 307 LTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLH---------------ASDVATMVDQDGIA-IRSGHHCTQPL 370 (408)
T ss_dssp HHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBC---------------HHHHHHHHHTTTEE-CBCSCTTCHHH
T ss_pred HHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCC---------------HHHHHHHHhhCCcE-EecCcccccHH
Confidence 999999999999999887642 3578999876532 23456667677763 43211
Q ss_pred ---ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 448 ---VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 448 ---~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.+..+++|+|+ ++++|++|||+++++|+++++.+
T Consensus 371 ~~~~~~~g~vRiS~-~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 371 HRLFDASGSARASL-YFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp HHHTTCCCCEEEEC-CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCccEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 12356799999 58999999999999999998753
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-27 Score=238.07 Aligned_cols=351 Identities=12% Similarity=0.105 Sum_probs=228.8
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhcCCC-------ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCc
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGFNVV-------GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTT 146 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n~~-------~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~gg 146 (486)
|-|+++-.+++..+.++ |.+..++... ...+..+..+.++-.++++.+++++|.+++ .+++++|+
T Consensus 3 ~iYlD~aa~~p~~~~v~-ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-------~I~~~~~~ 74 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVA-EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-------EIVFTSGA 74 (391)
T ss_dssp SEECBTTTCCCCCHHHH-HHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESSH
T ss_pred eEEeeCccccCCCHHHH-HHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-------cEEEECCH
Confidence 56888877777777765 5555554221 112223334455556788999999999876 78999999
Q ss_pred hHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHH---HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHH
Q 038818 147 CEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQ---IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDL 223 (486)
Q Consensus 147 t~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~---~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~ 223 (486)
|+++..++.......++ ++..|++++..|.++...++ ..|+ +++.+|.+. ++.+|+++++++|++
T Consensus 75 t~~l~~~~~~~~~~~~~-------~gd~Vv~~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~--~~~~d~~~~~~~i~~ 142 (391)
T d1p3wa_ 75 TESDNLAIKGAANFYQK-------KGKHIITSKTEHKAVLDTCRQLEREGF---EVTYLAPQR--NGIIDLKELEAAMRD 142 (391)
T ss_dssp HHHHHHHHHHHHHHHGG-------GCCEEEEETTSCHHHHHHHHHHHHTTC---EEEEECCCT--TSCCCHHHHHHHCCT
T ss_pred HHHHHHHHhhhhhhhcC-------CCCEEEEeccccchHHHHHHHHHHcCC---EEEEeCCCC--CCeEcHHHHHHhCCC
Confidence 99987776665543222 56788999999998765544 4588 999999885 568999999999987
Q ss_pred HHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC
Q 038818 224 DIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT 303 (486)
Q Consensus 224 ~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p 303 (486)
++ .+|++++++|++|.+.|+++|+++||++|+++++|++|+.+....+- .. ..+|++++++|||+ +|
T Consensus 143 ~T------~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~-~~-----~~~D~~~~s~~k~~-g~ 209 (391)
T d1p3wa_ 143 DT------ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDL-SQ-----LKVDLMSFSGHKIY-GP 209 (391)
T ss_dssp TE------EEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCT-TT-----SCCSEEEEESTTTT-SC
T ss_pred Cc------EEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccc-hh-----cccccccccccccc-CC
Confidence 65 48999999999999999999999999999999999999877665432 11 27999999999996 67
Q ss_pred CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC--chHHHHHHHHhchHHHHHHHHHHHHHHH
Q 038818 304 LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR--ALKLWLVLRSFGVANLRNFLRSHVRMAQ 381 (486)
Q Consensus 304 ~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~--~l~~~~~l~~~g~~g~~~~~~~~~~~a~ 381 (486)
.++|+++++++... ...+.+..+.. . .....+.... ..++...+. ...+...+..++..+++.
T Consensus 210 ~g~g~~~~~~~~~~----~~~~~~~gg~~-------~---~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 274 (391)
T d1p3wa_ 210 KGIGALYVRRKPRV----RIEAQMHGGGH-------E---RGMRSGTLPVHQIVGMGEAYR-IAKEEMATEMERLRGLRN 274 (391)
T ss_dssp SSCEEEEECBTTBC----CCCCSSCSSCT-------T---TTTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecchhc----ccCCcccCCcc-------c---cCcccCcchhhhhhhhhhhhh-HHHHHhhHHHHHHHHHHH
Confidence 79999999876321 11121111110 0 0011111111 111111222 123445556677788899
Q ss_pred HHHHHHhCCCCeEEecCC---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE----------
Q 038818 382 LFQELVGGDNRFEIVAPR---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV---------- 448 (486)
Q Consensus 382 ~l~~~L~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---------- 448 (486)
++.+.|.++++..+.... ...+++|...... ...+...+.+...+.|..+..+...
T Consensus 275 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~ 343 (391)
T d1p3wa_ 275 RLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE-----------GESLIMALKDLAVSSGSACTSASLEPSYVLRALGL 343 (391)
T ss_dssp HHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSC-----------HHHHHHHTTTEECBCCCC------CCCHHHHHHTC
T ss_pred HHHHHHHhhcCeeecccccccCceEEEEEeCCCC-----------hHHHHHHhCCCEEEccccccCCccchhHHHHHcCC
Confidence 999999998777664322 2345666655431 1222122211111233322221110
Q ss_pred ---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 449 ---AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 449 ---~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
...+++|+|+ ++++|++|||+++++|+++++++.+
T Consensus 344 ~~~~~~g~iRiS~-~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 344 NDELAHSSIRFSL-GRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp CHHHHHTEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0124799998 5788899999999999999988753
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=4.9e-27 Score=230.74 Aligned_cols=305 Identities=14% Similarity=0.149 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcC
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAG 193 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G 193 (486)
+-..+.+.+++++|.+ .+++|+|||+||+.++.+..+ +++.|+++..+|+|+..+++..|
T Consensus 48 l~~~~~~~~A~~~g~e---------~~~~t~g~t~a~~~~~~al~~-----------~gd~Vi~~~~~h~s~~~~~~~~g 107 (364)
T d2e7ja1 48 IHDFIHNQLPKFLGCD---------VARVTNGAREAKFAVMHSLAK-----------KDAWVVMDENCHYSSYVAAERAG 107 (364)
T ss_dssp HHHHHHTHHHHHTTSS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcC---------EEEEECcHHHHHHHHHHHHhC-----------CCcEEEeecccccccchHHHhcc
Confidence 3344567789999975 468999999999988876643 67889999999999999999999
Q ss_pred CCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchh
Q 038818 194 IDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 194 ~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
+ +++.+|++..+++.+|+++|+++|++.++.. .+.+|++++++|++|.+.|+++|+++|++||+++|+|+||+.+.
T Consensus 108 ~---~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~-~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~ 183 (364)
T d2e7ja1 108 L---NIALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR 183 (364)
T ss_dssp C---EEEEECCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT
T ss_pred c---eEEEeeeccccccccCHHHHHhhhhhhcccC-CceEEEeecCCCCCceeecchhheeccccccchhhccccchhhh
Confidence 9 9999999766678999999999999887644 35578889999999999999999999999999999999998766
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
+..+ .... ++|++++++||++++|.++|+++.+++.. ...+.....|.... .....+ ...
T Consensus 184 ~~~~-~~~~-----g~D~~~~S~~K~~~~~g~~g~l~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~-~~~ 243 (364)
T d2e7ja1 184 MPVS-LKEI-----GADFIVGSGHKSMAASGPIGVMGMKEEWA-EIVLRRSEKYKNKE------------VELLGC-TAR 243 (364)
T ss_dssp BCCC-HHHH-----TCSEEEEEHHHHSSCCSSCEEEEECTTTT-TTTTCBCSSCTTSB------------GGGTTC-CCC
T ss_pred hhhc-cccc-----ccceeeeccccccCCCCCEEEEEECHHHH-HHHHhhccccCccc------------cccccc-ccc
Confidence 5432 2222 68999999999999998899888876532 11111111121110 001111 111
Q ss_pred chHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-CeeEEEEEeecCCCCCCCCCCccchHHHHH-
Q 038818 354 ALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-NFAVVCFRVLPSASGLGDGKANEGANELNR- 429 (486)
Q Consensus 354 ~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~- 429 (486)
+.+.+..+..+ ..+.+ +...+..++++++.+.|.++ ++.++.+. ....+.|...+.. .+...
T Consensus 244 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 309 (364)
T d2e7ja1 244 GATIITLMASFPHVRERI-KRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVL------------YEISKK 309 (364)
T ss_dssp SHHHHHHHHHHHHHHHHG-GGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHH------------HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccch------------HHHHHH
Confidence 22222222221 11221 22344567888999999887 67776542 2222333322210 11111
Q ss_pred ------HHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 430 ------KLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 430 ------~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+...+...|...+.+ .....+|++. +.+|++|||+++++|++++++
T Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~---g~~~~~~~~~--~~~t~edid~~~~~l~ei~~~ 362 (364)
T d2e7ja1 310 AKGGRFFLYRELKSRKIHGIKP---GLTRYFKLST--YGLSDEEVDYVLNAFKEIIEK 362 (364)
T ss_dssp SSSGGGHHHHHHHHTTEECSCT---TCCSEEEEEC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHhcCCceecC---CCcceEEEec--cCCCHHHHHHHHHHHHHHHHH
Confidence 1233344445422211 1123466653 567888999999999999876
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.7e-27 Score=230.83 Aligned_cols=355 Identities=12% Similarity=0.067 Sum_probs=230.2
Q ss_pred CCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHH
Q 038818 74 PYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCT 153 (486)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~a 153 (486)
|+.+=|-|+|...+..+.+.+. ..... ..++.+.++..++++.+++++|.++++ .++||+|||+++..+
T Consensus 18 ~~~~l~~pGP~~~~~~Vl~am~----~~~i~-HRs~~f~~i~~ea~~~l~~llg~~~~~------~ii~~gsgT~a~~~~ 86 (388)
T d1h0ca_ 18 PNQLLLGPGPSNLPPRIMAAGG----LQMIG-SMSKDMYQIMDEIKEGIQYVFQTRNPL------TLVISGSGHCALEAA 86 (388)
T ss_dssp CCCEECSSSCCCCCHHHHHHHT----CCCCC-TTSHHHHHHHHHHHHHHHHHHTCCCSE------EEEESSCHHHHHHHH
T ss_pred CcCccccCCCCCCCHHHHHHhC----cCCCC-CCCHHHHHHHHHHHHHHHHHhCCCCCc------EEEEcCcHHHHHHHH
Confidence 5555577776555444433332 11111 246778889999999999999998764 688999999998777
Q ss_pred HHHHHHHHHHHccccCCCCeEEEecCCCchHHH--HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCcc
Q 038818 154 LAAARDQILNEIGRENISRLVVYGSDQTHSALQ--KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIP 231 (486)
Q Consensus 154 l~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p 231 (486)
+..... ++..+++....|++.. ..+...+. .+..++.+. ....|.+.+++.+.... +
T Consensus 87 i~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~ 145 (388)
T d1h0ca_ 87 LVNVLE-----------PGDSFLVGANGIWGQRAVDIGERIGA---RVHPMTKDP--GGHYTLQEVEEGLAQHK-----P 145 (388)
T ss_dssp HHHHCC-----------SSCCEEECBSSHHHHHHHHHHHHHC-----CBCCBCCT--TCCCCHHHHHHHHHHHC-----C
T ss_pred HHHhhc-----------cCCceeeecccceeeeeccccccccc---cccccccCC--ccccchHHHHHHhccCC-----c
Confidence 665432 4555666667887643 33455566 566666654 34889999988877643 3
Q ss_pred EEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEe
Q 038818 232 LFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWV 311 (486)
Q Consensus 232 ~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~ 311 (486)
.+|++++.+|.+|.+.|+++|+++|+++|+++|||++++.+....+- .. -++|++++++|||+++|.|+|++++
T Consensus 146 ~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~-~~-----~~~D~~~~s~~K~~~gp~g~~~~~~ 219 (388)
T d1h0ca_ 146 VLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM-DR-----QGIDILYSGSQKALNAPPGTSLISF 219 (388)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCT-TT-----TTCSEEEEESSSTTCCCTTCEEEEE
T ss_pred ceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccc-cc-----cccceecccccccccCCCceEEEee
Confidence 48999999999999999999999999999999999999877665532 11 1799999999999999999999988
Q ss_pred eCchHHHHHhcCCc----ccccCcc-CCCCCccCCCCccccCCCCC--CchHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 038818 312 KNPNALIKALSTNP----EFLRNKA-SDSKQVVDYKDWQITLSRRF--RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 312 ~~~~~~~~~~~~~~----~y~~~~~-~~~~~~~~~~~~~~~~sr~~--~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~ 384 (486)
++...- ....... .|+.... ......... .....+... ...++..++..+-..|++.+.++..+++.+++
T Consensus 220 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~ 296 (388)
T d1h0ca_ 220 SDKAKK-KMYSRKTKPFSFYLDIKWLANFWGCDDQ--PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLH 296 (388)
T ss_dssp CHHHHH-HHTTCSSCCSCSTTCHHHHHHHTTCSSS--CCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-hhhhccccccccccccchhhhhhhhccc--cccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHH
Confidence 876432 2211111 1110000 000000000 000011111 11234445555556678888889999999999
Q ss_pred HHHhCCCCeEEecC-C--C-eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhc-CcEEEeee-eECCEeEEEEEe
Q 038818 385 ELVGGDNRFEIVAP-R--N-FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINAS-GQLYVSHG-MVAGIYFIRFAV 458 (486)
Q Consensus 385 ~~L~~~~~~~~~~~-~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~~~~~lR~~~ 458 (486)
+.+... ++.++.+ + . ..+++|.+.... + .+.+.+.|.++ |+. +..+ .......+|++.
T Consensus 297 ~~~~~~-g~~~~~~~~~~rs~~i~~~~~p~~~----------~----~~~~~~~L~~~~gI~-v~~G~~~~~~~~iRis~ 360 (388)
T d1h0ca_ 297 GRLQAL-GLQLFVKDPALRLPTVTTVAVPAGY----------D----WRDIVSYVIDHFDIE-IMGGLGPSTGKVLRIGL 360 (388)
T ss_dssp HHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC----------C----HHHHHHHHHHHHCEE-CEECCGGGTTTEEEEEC
T ss_pred HHHhhc-CcccccCCHHHcCCeEEEEECCCCC----------C----HHHHHHHHHhcCCEE-EeCCchhhcCCEEEEeC
Confidence 999886 5555432 2 1 346788874321 1 23455555443 653 3322 111234799996
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhhc
Q 038818 459 GATLTEDRHVIAAWKVVQEKLDGILAT 485 (486)
Q Consensus 459 ~~~~tt~~did~~i~~l~~~~~~l~~~ 485 (486)
+++++|++|||+++++|+++++++.++
T Consensus 361 ~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 361 LGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 567889999999999999999988654
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.94 E-value=5e-26 Score=226.89 Aligned_cols=315 Identities=16% Similarity=0.079 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.++.+++++.+++++|++++ +.++|+++|+++...+.......... + ++..+++++..|++.......
T Consensus 69 ~~~~e~~R~~iA~llga~~~-------ei~~~~~~T~~~~~~~~~~~~~~~~~----~-~~~~vi~~~~~~~~~~~~~~~ 136 (404)
T d1qz9a_ 69 RDLSERLGNRLATLIGARDG-------EVVVTDTTSINLFKVLSAALRVQATR----S-PERRVIVTETSNFPTDLYIAE 136 (404)
T ss_dssp GGHHHHHHHHHHTTTTCCTT-------SEEECSCHHHHHHHHHHHHHHHHHHH----S-TTCCEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCC-------cEEEecCchHHHHHHhhhhhhhhccc----C-CCcEEEEeccccchHHHHHHh
Confidence 45666889999999999886 79999999999876655433221111 1 344455566666664443333
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.+. ++..++++. ++..+++.++++|++++ .+|++++.++.+|.+.|+++|+++|+++|+++|||++++.
T Consensus 137 ~~~---~~~~~~~~~--~~~~~~~~~~~~i~~~T------~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~ 205 (404)
T d1qz9a_ 137 GLA---DMLQQGYTL--RLVDSPEELPQAIDQDT------AVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSA 205 (404)
T ss_dssp HHH---HHHCSSCEE--EEESSGGGHHHHCSTTE------EEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred hhh---eeeeeceec--cccccchhHHHhcCCCc------eEEEEecccccccceecHHHHhccccccccceeEEeeccc
Confidence 333 222233332 34667888998887765 4899999999999999999999999999999999999988
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc-CC
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT-LS 349 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~s 349 (486)
+....+- ... ++|.+++++|||++.|.+ +|+++.++... . .............. .......+... ..
T Consensus 206 g~~~~~~-~~~-----~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~-~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 274 (404)
T d1qz9a_ 206 GAVPVDL-HQA-----GADYAIGCTYKYLNGGPGSQAFVWVSPQLC-D-LVPQPLSGWFGHSR---QFAMEPRYEPSNGI 274 (404)
T ss_dssp TTSCCCH-HHH-----TCSEEEECSSSTTCCCTTCCCEEEECTTTT-T-TSCCSCCCGGGBCT---TSCCCSSCCBCSSG
T ss_pred ccccccc-ccc-----cceEEEEechhhcccCCceEEEEEechhhh-h-hCCccccccCCccc---cccccccccccccc
Confidence 7765532 221 799999999999986665 56666554422 1 11111111111000 00000000000 00
Q ss_pred CC-----CCc---hHHHHHHHH---hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC----eeEEEEEeecCCCC
Q 038818 350 RR-----FRA---LKLWLVLRS---FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN----FAVVCFRVLPSASG 414 (486)
Q Consensus 350 r~-----~~~---l~~~~~l~~---~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----~~~v~f~~~~~~~~ 414 (486)
++ ... ..+...+.. .+.+.+++...........+.+.+...++++++++.. .++++|.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~---- 350 (404)
T d1qz9a_ 275 ARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---- 350 (404)
T ss_dssp GGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT----
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC----
Confidence 11 011 122222333 4556666666666666666777777778999987532 5788887652
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 415 LGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
...+.+.|.+.|++. + ....+++|+|+++.++|++|||+++++|++++++
T Consensus 351 -------------~~~v~~~L~~~gi~~-~---~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 351 -------------GYAVIQALIDRGVIG-D---YREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp -------------HHHHHHHHHTTTEEC-E---EETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHCCCEE-e---ecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 235677777778632 1 2233579999976678999999999999999864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=3.4e-24 Score=211.41 Aligned_cols=340 Identities=14% Similarity=0.099 Sum_probs=217.6
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-CCC---ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-NVV---GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
||++-.+++.++.++ +.+..++ +.+ ...+..+....++-.++++.+++++|++++ +.++++|+|+++.
T Consensus 4 yld~a~~~~~p~~v~-ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~-------~i~~~~~~T~~l~ 75 (376)
T d1eg5a_ 4 YFDNNATTRVDDRVL-EEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-------EIFFTSCATESIN 75 (376)
T ss_dssp ECBTTTCCCCCHHHH-HHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-------GEEEESCHHHHHH
T ss_pred EEECcccccCCHHHH-HHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-------cEEEECCHHHHHH
Confidence 666655555555544 4443333 111 112222333455555789999999999876 7999999999987
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHH---HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKA---AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a---~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
.++........ .++.+|+++...|.+.... ++..|+ +++.||+++ ++++|+++++++|++++
T Consensus 76 ~~~~~~~~~~~-------~~g~~v~~~~~~~~~~~~~~~~~~~~g~---~v~~vp~~~--~~~id~~~l~~~i~~~t--- 140 (376)
T d1eg5a_ 76 WILKTVAETFE-------KRKRTIITTPIEHKAVLETMKYLSMKGF---KVKYVPVDS--RGVVKLEELEKLVDEDT--- 140 (376)
T ss_dssp HHHHHHHHHTT-------TTCCEEEECTTSCHHHHHHHHHHHHTTC---EEEECCBCT--TSCBCHHHHHHHCCTTE---
T ss_pred hhhhccccccc-------ccCcccccccccchhhHHHHHHHHhcCC---EEEEEcCCC--CCeECHHHHHHhcCCCc---
Confidence 76654433211 1566777777777775544 445588 999999986 56999999999997754
Q ss_pred CccEEEEeecCCccccccCCchHHHHHHHHh--CceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc
Q 038818 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRY--SIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~ 306 (486)
.+|++++.++.+|.+.|+++|.++|+++ ++.++||++++.+....+- .. .++|++++++|||+ +|.|+
T Consensus 141 ---~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~-~~-----~~~D~~~~s~~K~~-gp~G~ 210 (376)
T d1eg5a_ 141 ---FLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSL-EK-----LEVDYASFSAHKFH-GPKGV 210 (376)
T ss_dssp ---EEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCC-TT-----TCCSEEEEEGGGGT-SCTTC
T ss_pred ---eEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccc-cc-----cCccceecccceee-cCCCc
Confidence 5899999999999999999999999776 8999999999887765542 21 17999999999995 78999
Q ss_pred eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 385 (486)
|++++++... ..|.+...... .....+.. ...........................+..++.+
T Consensus 211 ~~l~~~~~~~------~~p~~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (376)
T d1eg5a_ 211 GITYIRKGVP------IRPLIHGGGQE----------RGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVS 274 (376)
T ss_dssp EEEEECTTSC------CCCSBCSSCTT----------TTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred eeEEeccCcc------cCCcccCCCCc----------ccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcc
Confidence 9999986532 22222211100 00111111 1111111111112223344556666777888888
Q ss_pred HHhCCCCeEEecC--CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee------eE--------C
Q 038818 386 LVGGDNRFEIVAP--RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG------MV--------A 449 (486)
Q Consensus 386 ~L~~~~~~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------~~--------~ 449 (486)
.|.......+... ....++.|.+.... ...+...|.+.|+. +..+ .. .
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~L~~~gI~-vr~G~~c~~~~~~~~~~l~~~ 338 (376)
T d1eg5a_ 275 GLMNLGAHIITPLEISLPNTLSVSFPNIR---------------GSTLQNLLSGYGIY-VSTSSACTSKDERLRHVLDAM 338 (376)
T ss_dssp HHHTTTCEECSCTTSBCTTEEEEECTTCC---------------HHHHHHHHHHTTEE-CBC------------CHHHHT
T ss_pred ccccccccccccccccccceeeeccCCCC---------------HHHHHHHHhhCCeE-EeCcchhcCCccchhHHHHHc
Confidence 8887644333222 23456667665431 23444455556653 2111 00 0
Q ss_pred C------EeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 450 G------IYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 450 ~------~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
| .+++|+|+ +.++|++|||+++++|++++..
T Consensus 339 gi~~~~~~~~iRiS~-~~ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 339 GVDRRIAQGAIRISL-CKYNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp TCCHHHHHHEEEEEC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Confidence 1 24799998 5788899999999999999874
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.4e-23 Score=207.66 Aligned_cols=303 Identities=11% Similarity=0.065 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc
Q 038818 113 ELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA 192 (486)
Q Consensus 113 ~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 192 (486)
.+..++.+.+++++|.+ ..+++++|++||..++.+... ++++|++....|.|+..++...
T Consensus 90 ~~~~~lE~~lA~~~g~e---------~al~~~SG~~An~~~i~~l~~-----------~~d~i~~d~~~h~s~~~G~~~~ 149 (401)
T d1fc4a_ 90 DSHKELEQKLAAFLGME---------DAILYSSCFDANGGLFETLLG-----------AEDAIISDALNHASIIDGVRLC 149 (401)
T ss_dssp HHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHTTHHHHCC-----------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhcCC---------ceEEecchhhhhHHHHHHhcC-----------CCcEEEeCCcchHHHHcccccc
Confidence 33345556678888875 468999999999888776543 6788999999999999999988
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccch
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGS 272 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~ 272 (486)
+. ++..++ ..|++++++++++..+.+....+|++....++.|.+.||++|.+||++||+++++|+||+++
T Consensus 150 ~a---~~~~~~-------~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g 219 (401)
T d1fc4a_ 150 KA---KRYRYA-------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVG 219 (401)
T ss_dssp CS---EEEEEC-------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTT
T ss_pred Cc---eEEEEc-------CCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccc
Confidence 88 777776 45899999999887776666677888888888999999999999999999999999999887
Q ss_pred hccCcc--chhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCC
Q 038818 273 ACICPE--FRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSR 350 (486)
Q Consensus 273 ~~~~~~--~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr 350 (486)
.+.... ..........+|.++.+..|.++++. |.++..++..........++|++.... +
T Consensus 220 ~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~--Gg~v~g~~~~~~~l~~~~~~~~~s~~l---------------~- 281 (401)
T d1fc4a_ 220 FVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSL---------------A- 281 (401)
T ss_dssp TSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCC---------------C-
T ss_pred cccCCCCccchhccCCCCCeEEEeecccccccCC--cccccCCHHHHHHHHcCChhhhhcCCC---------------C-
Confidence 653321 11112223578999999999997543 344444444433222233455543210 0
Q ss_pred CCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 351 RFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 351 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
+..+.++..+++.+ ....++.++..++.++|++.+.+. ++.+. ...++++.+.+.. ......
T Consensus 282 p~~~~aa~~~l~~~--~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~-~~~~pIv~v~~~~--------------~~~a~~ 343 (401)
T d1fc4a_ 282 PAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD--------------AVVAQK 343 (401)
T ss_dssp HHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC--------------HHHHHH
T ss_pred HHHHHHHHhhhccc--ccCHHHHHHHHHHHHHHHhhhccc-CCccC-CCCCCEEEEEECC--------------HHHHHH
Confidence 01112222233322 233567888999999999999887 56654 3456787766653 344567
Q ss_pred HHHHHHhcCcEE---EeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLY---VSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 431 l~~~l~~~g~~~---~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
+.++|.++|+++ ..|++..+...+|++++ ...|++|||+++++|+++.+++
T Consensus 344 ~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~-a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 344 FARELQKEGIYVTGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHTTEECCEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCceEEeECCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 888899999852 22344567788999985 5777789999999999999875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=5e-25 Score=216.08 Aligned_cols=322 Identities=11% Similarity=0.071 Sum_probs=197.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH-HHH
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA-LQK 187 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~ 187 (486)
+.+.++.+++++.+++++|.+++. ...++|+|||+++..++...... ++.+++++...+.+ ...
T Consensus 29 ~~~~~~~~~~r~~l~~l~~~~~~~-----~~i~~t~s~T~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~ 93 (361)
T d1m32a_ 29 DYNIGVVEQIRQQLTALATASEGY-----TSVLLQGSGSYAVEAVLGSALGP----------QDKVLIVSNGAYGARMVE 93 (361)
T ss_dssp HHHTTTHHHHHHHHHHHHCSSSSE-----EEEEEESCHHHHHHHHHHHSCCT----------TCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-----EEEEECCCHHHHHHHHHHHhhhh----------ccccceeeehhhhhhHHH
Confidence 445566678999999999998752 13678889999987665543221 34455555443333 444
Q ss_pred HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeec
Q 038818 188 AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDA 267 (486)
Q Consensus 188 a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~ 267 (486)
.+...+. ....+...... ..+.+..+...... ..+.+|.+++.+|.+|.+.|+++|+++|+++|++++||+
T Consensus 94 ~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa 164 (361)
T d1m32a_ 94 MAGLMGI---AHHAYDCGEVA--RPDVQAIDAILNAD----PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDA 164 (361)
T ss_dssp HHHHHTC---CEEEEECCTTS--CCCHHHHHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEEC
T ss_pred Hhhhhhc---ccccccccccC--CccchhhHHHHHhc----cCccceEEEeeecccccchhhhhhhhhhcccceeeEeec
Confidence 5556666 66666665432 33333333222211 124589999999999999999999999999999999999
Q ss_pred cccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCC--ccCCCCcc
Q 038818 268 AYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ--VVDYKDWQ 345 (486)
Q Consensus 268 a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~ 345 (486)
+++.+....+- .. -++|++++++|||+++|.|.|+++++++.... ..+............ ........
T Consensus 165 ~qs~G~~~~d~-~~-----~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (361)
T d1m32a_ 165 MSSFGGIPMDI-AA-----LHIDYLISSANKCIQGVPGFAFVIAREQKLAA----CKGHSRSLSLDLYAQWRCMEDNHGK 234 (361)
T ss_dssp TTTTTTSCCCT-TT-----TTCSEEEEESSSTTCCCSSEEEEEEEHHHHTT----CTTCCSCSTTCHHHHHHHHHHTTTC
T ss_pred ccccCcccccc-cc-----cccceEEeeecccccCCCCceEEEechhhhhh----hccccccccccchhhhccccccccc
Confidence 99887765542 22 17999999999999999999999998753321 111111000000000 00000000
Q ss_pred ccCCCC-CCchHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC--e-eEEEEEeecCCCCCCCCCC
Q 038818 346 ITLSRR-FRALKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN--F-AVVCFRVLPSASGLGDGKA 420 (486)
Q Consensus 346 ~~~sr~-~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~-~~v~f~~~~~~~~~~~~~~ 420 (486)
...+.. .....+..++.....++ .....++...+++.+.+.++.. ++.+..++. + .+++|......
T Consensus 235 ~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~~~-------- 305 (361)
T d1m32a_ 235 WRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDP-------- 305 (361)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCT--------
T ss_pred cCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCCCC--------
Confidence 001101 11233334444443443 4455567778888999999876 565544432 2 45677654221
Q ss_pred ccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 421 NEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 421 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
......+.+.|.++|+... .+.....+.+|+++++ +++++|||+++++|++++
T Consensus 306 ----~~~~~~~~~~l~~~gi~i~-~G~~~~~~~~Ris~~g-~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 306 ----QYRFSEFYRRLKEQGFVIY-PGKVSQSDCFRIGNIG-EVYAADITALLTAIRTAM 358 (361)
T ss_dssp ----TCCHHHHHHHHHHTTEECE-ECCCSSSCEEEEECCS-SCCHHHHHHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHHCCcEEE-CCCcCCCCEEEEeCCC-CCCHHHHHHHHHHHHHHc
Confidence 1113456777888887543 3333445689999765 467889999999999874
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.92 E-value=1.1e-23 Score=207.50 Aligned_cols=354 Identities=12% Similarity=0.019 Sum_probs=218.8
Q ss_pred CCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHH
Q 038818 72 QSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAIL 151 (486)
Q Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 151 (486)
.-|+-+=+-|+|...+.-+.+.+.. .... ..++.+.++.+++++.+++++|.++.+ ..++++|||+++.
T Consensus 15 ~~p~~~l~~PGP~~v~~~Vl~am~~----~~~~-hr~~ef~~i~~~~r~~l~~ll~~~~~~------~i~~~g~gT~~~~ 83 (377)
T d1vjoa_ 15 EVPSRLLLGPGPSNAHPSVLQAMNV----SPVG-HLDPAFLALMDEIQSLLRYVWQTENPL------TIAVSGTGTAAME 83 (377)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHHSS----CCCC-TTSHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHH
T ss_pred CCCcceeecCCCCCCCHHHHHHhCc----CCCC-CCCHHHHHHHHHHHHHHHHHhCCCCCe------EEEEcCcHHHHHH
Confidence 4454444556665555444443321 1111 246778889999999999999998764 6788888999987
Q ss_pred HHHHHHHHHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC
Q 038818 152 CTLAAARDQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL 229 (486)
Q Consensus 152 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~ 229 (486)
.++..... ++..+++....|++. ...+...+. ....+.... ....+.+..+.......
T Consensus 84 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~---- 143 (377)
T d1vjoa_ 84 ATIANAVE-----------PGDVVLIGVAGYFGNRLVDMAGRYGA---DVRTISKPW--GEVFSLEELRTALETHR---- 143 (377)
T ss_dssp HHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TCCCCHHHHHHHHHHHC----
T ss_pred HHHHhccc-----------cccccceeeechhhhhhhhhhhhhcc---cccccccCC--CCcccchhhhhhhhcCc----
Confidence 66655433 344455555677663 334445555 555555543 22556666665554432
Q ss_pred ccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEE
Q 038818 230 IPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCL 309 (486)
Q Consensus 230 ~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~ 309 (486)
+.+|++++.+|.+|.+.|+++|+++||++|+.+++|++++.+....+- .. .++|.++++.|||+++|.++|++
T Consensus 144 -~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~-~~-----~~~d~~~~s~~K~~~gp~g~~~~ 216 (377)
T d1vjoa_ 144 -PAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFL-DA-----WGVDLAYSCSQKGLGCSPGASPF 216 (377)
T ss_dssp -CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCT-TT-----TTCSEEECCSSSTTCSCSSCEEE
T ss_pred -ceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcc-cc-----cccceeeecccccccCCCEEEEe
Confidence 347889999999999999999999999999999999999776654432 11 27999999999999999999999
Q ss_pred EeeCchHHHHHhcCCcccccC-ccCCCCCccCCCCccccCCCCC-Cc-hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 038818 310 WVKNPNALIKALSTNPEFLRN-KASDSKQVVDYKDWQITLSRRF-RA-LKLWLVLRSFGVANLRNFLRSHVRMAQLFQEL 386 (486)
Q Consensus 310 ~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~~~~sr~~-~~-l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~ 386 (486)
++++... ........+.... ............... ..+... .. ..+-..+......|.+.+.++..++++++.+.
T Consensus 217 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 294 (377)
T d1vjoa_ 217 TMSSRAI-EKLQRRRTKVANWYLDMNLLGKYWGSERV-YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWER 294 (377)
T ss_dssp EECHHHH-HHHHTCSSCCSCSTTCHHHHHHHHSTTCC-CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHH-hhhhccCCCCcceeeccchhhhccCcccc-cccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhh
Confidence 8886643 2222211111100 000000000000000 001010 00 12222333345677888889999999999999
Q ss_pred HhCCCCeEEecCCC---eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCC
Q 038818 387 VGGDNRFEIVAPRN---FAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATL 462 (486)
Q Consensus 387 L~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~ 462 (486)
+.+. ++.++.++. ..+++|.+.... ..+++.+.|. +.|+.+-.+....+..++|++.++++
T Consensus 295 l~~~-~~~~~~~~~~rs~~v~~~~~p~~~--------------~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~ 359 (377)
T d1vjoa_ 295 LEDI-GLSLHVEKEYRLPTLTTVCIPDGV--------------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFN 359 (377)
T ss_dssp HHHT-TCCBSSCGGGBCSSEEEEECCTTC--------------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGG
T ss_pred hhcc-CceeecChHhcCCeEEEEECCCCC--------------CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCC
Confidence 9876 566554432 346677764311 1244555554 34664322221123457999976778
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 038818 463 TEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 463 tt~~did~~i~~l~~~~~ 480 (486)
++++|||+++++|+++++
T Consensus 360 ~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 360 SRKESVDQLIPALEQVLR 377 (377)
T ss_dssp CSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 899999999999998763
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.91 E-value=9.7e-23 Score=199.61 Aligned_cols=341 Identities=12% Similarity=0.065 Sum_probs=227.0
Q ss_pred cCCCCCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 69 THWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 69 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
.++.+-.|+|.-.. +.......+.+..+ +.+...-..-.+...+..++.+.+++++|.+. .+++++|..
T Consensus 48 ~~FsSndYLGL~~~-p~v~~a~~~al~~y-G~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~---------all~~sG~~ 116 (396)
T d2bwna1 48 TVWCGNDYLGMGQH-PVVLAAMHEALEAV-GAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA---------ALVFSSAYN 116 (396)
T ss_dssp EECSCSCTTSGGGC-HHHHHHHHHHHHHH-CSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE---------EEEESCHHH
T ss_pred EEEEcccccCcCCC-HHHHHHHHHHHHHh-CCCccccccccCCchHHHHHHHHHHHHhCCCc---------eeeeecchH
Confidence 34566778887432 23333334444433 11111111111234555566778999999864 588888999
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCC
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAG 228 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g 228 (486)
||+.++.+.... .++++|+.....|.|+..+++..+. +++.++. .|+++|+++++....
T Consensus 117 An~~~i~~l~~~---------~~~d~i~~D~~~Hasi~~g~~ls~a---~~~~f~H-------nd~~~l~~l~~~~~~-- 175 (396)
T d2bwna1 117 ANDATLSTLRVL---------FPGLIIYSDSLNHASMIEGIKRNAG---PKRIFRH-------NDVAHLRELIAADDP-- 175 (396)
T ss_dssp HHHHHHHHHHHH---------STTCEEEEETTCCHHHHHHHHHSCC---CEEEECT-------TCHHHHHHHHHHSCT--
T ss_pred HHHHHHHHHhcc---------cCCCceeehhhhhhccchhhhcccc---CceEeec-------chHHHhhhHHhhhcc--
Confidence 998777654322 0578899999999999999999998 8888864 388899888775432
Q ss_pred CccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhh---cCCCCCCceeeccccccCCCCc
Q 038818 229 LIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFI---DGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 229 ~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~---~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
..+.+|++....++.|.+.|+++|.+||++||++++||.||+.+.+.. ..+... .....+|.++.+..|.++..
T Consensus 176 ~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~-~G~G~~~~~~~~~~~di~~gTlsKa~g~~-- 252 (396)
T d2bwna1 176 AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGP-RGAGVAERDGLMHRIDIFNGTLAKAYGVF-- 252 (396)
T ss_dssp TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSST-TSCCHHHHHTCGGGCSEEEEESSSTTCSC--
T ss_pred cCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeecc-ccccchhhcCCceeeeeeeeccccccccc--
Confidence 345678889999999999999999999999999999999998766532 222211 11246899999999999865
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 385 (486)
.|+ +.-++...........+|++..... +..+.++..++..+-.+..+++..+...+.+++++
T Consensus 253 Gg~-v~~~~~~i~~l~~~~~~~ifStalp----------------p~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~ 315 (396)
T d2bwna1 253 GGY-IAASARMVDAVRSYAPGFIFSTSLP----------------PAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKM 315 (396)
T ss_dssp CEE-EEECHHHHHHHHHHCHHHHTSBCCC----------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cchhHHHHHHHHhhcchhhhcccCc----------------HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 344 4445544333333445566543110 01122233344444344445666778889999999
Q ss_pred HHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcE---EEeeeeECCEeEEEEEecCC
Q 038818 386 LVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN-ASGQL---YVSHGMVAGIYFIRFAVGAT 461 (486)
Q Consensus 386 ~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~---~~~~~~~~~~~~lR~~~~~~ 461 (486)
.+.+. ++.+. +..++++.+.+.. ++.+..+.+++. +.|++ +..|++..+...+|++++ .
T Consensus 316 ~l~~~-g~~~~-~~~spIvpv~ig~--------------~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~ls-a 378 (396)
T d2bwna1 316 RLKAL-GMPII-DHGSHIVPVVIGD--------------PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPS-P 378 (396)
T ss_dssp HHHHH-TCCBC-CCSSSCEEEECCC--------------HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCC-T
T ss_pred HHHhc-CCCcC-CCCCCEEEEEeCC--------------HHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeC-c
Confidence 99886 67665 4567888877653 344556666655 56874 233455567788999995 5
Q ss_pred CCcHHHHHHHHHHHHHH
Q 038818 462 LTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~ 478 (486)
..|++|||+++++|+++
T Consensus 379 ~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 379 VHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66777999999999986
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.91 E-value=6.8e-23 Score=207.59 Aligned_cols=328 Identities=9% Similarity=-0.055 Sum_probs=192.4
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCC
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPK 197 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~ 197 (486)
..+.++++||.+. .+|+++||+++..|+..+.-. +++.|+++..+|.|+..++..++....
T Consensus 71 ae~~~A~~~ga~~---------a~f~~~Gtt~~n~a~i~a~~~----------~gd~Vi~~~~~H~Sv~~~~~~l~~~~~ 131 (462)
T d1c4ka2 71 AEKHAARVYNADK---------TYFVLGGSSNANNTVTSALVS----------NGDLVLFDRNNHKSVYNSALAMAGGRP 131 (462)
T ss_dssp HHHHHHHHTTCSE---------EEEESSHHHHHHHHHHHHHCC----------TTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred HHHHHHHHhCCCe---------EEEECCchHHHHHHHHHHhcC----------CCCeEEecccchHHHHHHHHHHhcCCc
Confidence 4578999999864 466666665554554433221 788999999999999988777643211
Q ss_pred CeEEEecCCCC------CcccCHHHHHHHHHH---HHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeecc
Q 038818 198 NFRAIKTTKSS------SFTLTPESLQAAIDL---DIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 198 ~v~~v~~d~~~------~~~~d~~~L~~~l~~---~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a 268 (486)
.+..+++|+.+ ...++.+.+++.+.+ .......+..+++...+|..|.+.|+++|+++|++||+++|||+|
T Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A 211 (462)
T d1c4ka2 132 VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSA 211 (462)
T ss_dssp EEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECT
T ss_pred eeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEech
Confidence 33444455321 013445555444321 122334455677777788899999999999999999999999999
Q ss_pred ccchhccCccchhhhc--C-----CCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCC
Q 038818 269 YAGSACICPEFRHFID--G-----IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDY 341 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~--~-----~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 341 (486)
|++++.+.+..+.... + ...+|++++++||+++++.+++++..++..............+...
T Consensus 212 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~---------- 281 (462)
T d1c4ka2 212 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNS---------- 281 (462)
T ss_dssp TCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHH----------
T ss_pred hhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHh----------
Confidence 9998887765543321 1 1246999999999999998888888877533110000000000000
Q ss_pred CCccccCCCCC--CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe------------------
Q 038818 342 KDWQITLSRRF--RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF------------------ 401 (486)
Q Consensus 342 ~~~~~~~sr~~--~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~------------------ 401 (486)
....+.+... ....+-.+...+..+..+++.++..++++++++++.+++++.....+..
T Consensus 282 -~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 360 (462)
T d1c4ka2 282 -FNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNI 360 (462)
T ss_dssp -HHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCG
T ss_pred -hhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhccc
Confidence 0001111111 1112223333444556677888999999999999988765432111000
Q ss_pred --------------------------eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEE
Q 038818 402 --------------------------AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIR 455 (486)
Q Consensus 402 --------------------------~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR 455 (486)
.-+.+...+...+..+ ..........+.+.|.+.|+. + ...+...+|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~---~~~~G~~~~~~~~~L~~~gI~-~---e~~~~~~i~ 433 (462)
T d1c4ka2 361 DYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGD---YEDFGVPATIVANYLRDHGII-P---EKSDLNSIL 433 (462)
T ss_dssp GGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTE---ECSSCCCHHHHHHHHHHTTCC-C---SEECSSEEE
T ss_pred chhccCCcchhccccccCccceecccceeEEecCCccccccc---hhhcCCcHHHHHHHHHHcCCe-e---eccCCCeEE
Confidence 0011211110000000 000000123445556666762 2 223456799
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 456 FAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 456 ~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+++ ++.+|++|||+++++|+++.+.+-
T Consensus 434 ~~~-s~~~T~edid~li~aL~ei~r~~~ 460 (462)
T d1c4ka2 434 FLM-TPAETPAKMNNLITQLLQLQRLIE 460 (462)
T ss_dssp EEC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEe-cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 987 688999999999999999987653
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=3.7e-23 Score=199.78 Aligned_cols=324 Identities=13% Similarity=0.038 Sum_probs=206.9
Q ss_pred HHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 86 IAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 86 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
.|.++..+..+..+ ....|.. ..+..++++++++++|.+. ..+||+|||+||+.++..++.
T Consensus 16 ~P~v~~A~~~a~~~-~~~~~~~----~~~~~~l~~~la~~~g~~~--------~v~f~~sGt~An~~a~~~~~~------ 76 (345)
T d1v72a1 16 SPEVAQALVKHSSG-QAGPYGT----DELTAQVKRKFCEIFERDV--------EVFLVPTGTAANALCLSAMTP------ 76 (345)
T ss_dssp CHHHHHHHHHTTSS-CCCSTTC----SHHHHHHHHHHHHHHTSCC--------EEEEESCHHHHHHHHHHTSCC------
T ss_pred CHHHHHHHHHHhcc-CccccCC----CHHHHHHHHHHHHHHCCCc--------EEEECCchHHHHHHHHHHHHh------
Confidence 56665544433222 2233433 3456677888999999864 578999999999998887654
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec-CCcccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAIT 244 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G 244 (486)
....+++....|+++...+...+.....+..++.+. ++.++++.+++.+.+.......+..++++. ..+..|
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (345)
T d1v72a1 77 -----PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVG 149 (345)
T ss_dssp -----TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTS
T ss_pred -----cCCccccccccceeeechhhHHHhcCcccccccccc--cccccHHHhhhhhcccccccccccceeeeeecccccc
Confidence 456677788899997765544433222666666553 569999999999987654333333222222 223333
Q ss_pred ---ccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcC-CCCCCceeeccccccCCCCcceEEEeeCchHHHHH
Q 038818 245 ---TVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDG-IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKA 320 (486)
Q Consensus 245 ---~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~-~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~ 320 (486)
.++++.++.++|++||+++|+|++++++............. ....+.++...+|.+. ...+.+...........
T Consensus 150 ~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 227 (345)
T d1v72a1 150 SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV--LAAEAIVLFNTSLATEM 227 (345)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC--SSCEEEEESSGGGHHHH
T ss_pred ccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccc--ccccccccchhhhhhhc
Confidence 45778899999999999999999997765433211111111 1134455555555443 34444444443322111
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
.. .+.. ...+....+..++.....+......+...+...+++++.+.+.+++++++..+..
T Consensus 228 ~~---~~~~----------------~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~ 288 (345)
T d1v72a1 228 SY---RRKR----------------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTE 288 (345)
T ss_dssp HH---HHHH----------------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCC
T ss_pred cc---cccc----------------cccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCC
Confidence 10 0000 0111122334455566667777778888888999999999999999999988888
Q ss_pred eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 401 FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 401 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
++++.+.+.. .+.++|.++|+.+ . ....+.+.+|+++ ++.+|+||||+++++|+++
T Consensus 289 ~niv~~~~~~-------------------~~~~~L~~~gi~v-~-~~~~~~~~lR~~~-~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 289 ANILFCRLDS-------------------AMIDALLKAGFGF-Y-HDRWGPNVVRFVT-SFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp SSEEEEEECH-------------------HHHHHHHHTTCBC-B-CSSSSTTEEEEEC-CTTCCHHHHHHHHHHHHHT
T ss_pred ccEEEEEcCH-------------------HHHHHHHHcCCCc-c-ccCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHh
Confidence 8888887642 2345677778743 2 2224567899998 6899999999999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.4e-22 Score=199.31 Aligned_cols=296 Identities=13% Similarity=0.071 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
..+..++.+.+++++|.+ ..+++++|++||..++.+... +++.|++....|.|+..+++.
T Consensus 82 ~~~~~~lE~~LA~~~g~e---------~al~~~SG~~an~~~i~al~~-----------~~d~v~~d~~~h~si~~g~~~ 141 (383)
T d1bs0a_ 82 SVVHQALEEELAEWLGYS---------RALLFISGFAANQAVIAAMMA-----------KEDRIAADRLSHASLLEAASL 141 (383)
T ss_dssp CHHHHHHHHHHHHHHTCS---------EEEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHT
T ss_pred chHHHHHHHHHHHhcCCC---------ceEEecccchhhHHHHHhhcC-----------CCceEEeeccccHHHhhcccc
Confidence 344555667788888876 368889999999887776543 678899999999999999998
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.+. .++.++ +.|+++|++.+.+... ...+|++....++.|.+.|+++|.++|++||++++||+||+.
T Consensus 142 ~~~---~~~~~~-------hnd~~~le~~l~~~~~---~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~ 208 (383)
T d1bs0a_ 142 SPS---QLRRFA-------HNDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGT 208 (383)
T ss_dssp SSS---EEEEEC-------TTCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCC---cceEec-------chHHHHHHHHhcccCC---CceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceee
Confidence 887 888776 4499999999875432 245788888999999999999999999999999999999987
Q ss_pred hhccCccchhh--hcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCC
Q 038818 272 SACICPEFRHF--IDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLS 349 (486)
Q Consensus 272 ~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~s 349 (486)
+.+... .+.. ..++ ..|.+..+..|.++.+ .|++.. .............+|++.... +
T Consensus 209 gv~G~~-g~G~~~~~~~-~~~~~~~t~~ka~g~~--Gg~v~~-~~~~~~~l~~~~~~~~~s~~~---------------~ 268 (383)
T d1bs0a_ 209 GVIGEQ-GRGSCWLQKV-KPELLVVTFGKGFGVS--GAAVLC-SSTVADYLLQFARHLIYSTSM---------------P 268 (383)
T ss_dssp TTSSGG-GCCHHHHTTC-CCSEEEEESSSTTSSC--CEEEEE-CHHHHHHHHHHCHHHHSSBCC---------------C
T ss_pred eecCCc-ccchHHHcCC-cccccccccccccccc--cccccc-chhHHHHHHhhchhhhhcccc---------------c
Confidence 655322 2211 1122 4566677778888765 344443 333332222334445543210 0
Q ss_pred CCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHH
Q 038818 350 RRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNR 429 (486)
Q Consensus 350 r~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
+..+.++..++..+-.........+..++..++++.|.+. ++.+. +..++++.+.+.. ++...
T Consensus 269 -p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~-~~~s~Ii~v~~g~--------------~~~a~ 331 (383)
T d1bs0a_ 269 -PAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGD--------------NSRAL 331 (383)
T ss_dssp -HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEES--------------HHHHH
T ss_pred -chHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCccC-CCCCCEEEEEECC--------------HHHHH
Confidence 0111233334444434555677788889999999999988 67765 4456776665543 34456
Q ss_pred HHHHHHHhcCcEE---EeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 430 KLLESINASGQLY---VSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 430 ~l~~~l~~~g~~~---~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
++.++|.++|+.. ..|++..+...+|++++ ...|++|||+++++|..+
T Consensus 332 ~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~-a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 332 QLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHTTEECCEECTTSSCTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCceEEEEcCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHhc
Confidence 7888888999842 23445567888999985 577788999999999875
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.90 E-value=1.4e-22 Score=200.42 Aligned_cols=354 Identities=14% Similarity=0.045 Sum_probs=219.3
Q ss_pred CCCcceecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHH
Q 038818 73 SPYYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILC 152 (486)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 152 (486)
.|+..-+.|+|...+.-+.+.+ ......+ .++.+.++.+++++.|++++|.++.. ..++++|||+++..
T Consensus 15 ~~~~~l~~PGP~~~~~~V~~Am---~~~~~~h--r~~ef~~i~~~~r~~L~~ll~~~~~~------~i~~~gsgT~a~ea 83 (388)
T d2ch1a1 15 IPEKIMMGPGPSNCSKRVLTAM---TNTVLSN--FHAELFRTMDEVKDGLRYIFQTENRA------TMCVSGSAHAGMEA 83 (388)
T ss_dssp CCCCBCCSSSSCCCCHHHHHHT---TSCCCCT--TCHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHHH
T ss_pred CCcceeeeCCCCCCCHHHHHHh---CcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCCe------EEEEcCcHHHHHHH
Confidence 3445556677655443333332 2222222 45778888899999999999997542 56678889988876
Q ss_pred HHHHHHHHHHHHccccCCCCeEEEecCCCchHH--HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCc
Q 038818 153 TLAAARDQILNEIGRENISRLVVYGSDQTHSAL--QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLI 230 (486)
Q Consensus 153 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~ 230 (486)
++..... ++..+++....|++. ...+...+. ..+.++.++. ...+.+.+++++....
T Consensus 84 ~~~~l~~-----------~~~~vl~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~----- 142 (388)
T d2ch1a1 84 MLSNLLE-----------EGDRVLIAVNGIWAERAVEMSERYGA---DVRTIEGPPD--RPFSLETLARAIELHQ----- 142 (388)
T ss_dssp HHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTT--SCCCHHHHHHHHHHHC-----
T ss_pred HHHHhcc-----------ccccccccccccccccchhhhhhhcc---cccccccccc--cccchhhhhhhhccCC-----
Confidence 6555433 344455555677764 344566676 7777777653 3678888877765442
Q ss_pred cEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEE
Q 038818 231 PLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLW 310 (486)
Q Consensus 231 p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~ 310 (486)
+.++++++.+|.+|.+.|+++|+++||++|+.++||++++.+....+- .. + ++|.++++.|||+++|.|+|+++
T Consensus 143 ~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~-~~----~-~~d~~~~s~~K~~~gp~G~g~~~ 216 (388)
T d2ch1a1 143 PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYM-DK----W-EIDAVYTGAQKVLGAPPGITPIS 216 (388)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCT-TT----T-TCCEEECCCC-CCCCCSSCEEEE
T ss_pred cceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccch-hc----c-CceEEEEccccccCCCCeEEEEe
Confidence 357899999999999999999999999999999999999877665532 11 1 79999999999999999999999
Q ss_pred eeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC-CCCC--C---chHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 038818 311 VKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL-SRRF--R---ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 311 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-sr~~--~---~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~ 384 (486)
++.+.... ......+...... +............+. .... . ...+..+++.+..++......+...+..++.
T Consensus 217 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T d2ch1a1 217 ISPKALDV-IRNRRTKSKVFYW-DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILY 294 (388)
T ss_dssp ECHHHHHH-HHTCSSCCSCGGG-CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHh-hhcccCccccccc-cchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 98765432 2111111100000 000000000000011 1111 1 1234445555556677777777777777777
Q ss_pred HHHhCCCCeEEe-cCC--Ce-eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeE-CCEeEEEEEe
Q 038818 385 ELVGGDNRFEIV-APR--NF-AVVCFRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMV-AGIYFIRFAV 458 (486)
Q Consensus 385 ~~L~~~~~~~~~-~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~-~~~~~lR~~~ 458 (486)
..+... ++.+. ..+ .+ .+++|.+.... + ..++...|.+ .|+. +..+.. .....+|++.
T Consensus 295 ~~~~~~-~~~~~~~~~~~rs~~v~~~~~p~g~----------~----~~~l~~~l~~~~gI~-v~~G~~~~~~~~~RIs~ 358 (388)
T d2ch1a1 295 EGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV----------D----WWKVSQYAMNNFSLE-VQGGLGPTFGKAWRVGI 358 (388)
T ss_dssp HHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC----------C----HHHHHHHHHHHHCBC-CBCCCGGGTTTEEEEEC
T ss_pred hhhhhc-ccccccCCHHHhCCeEEEEECCCCC----------C----HHHHHHHHhhcCCEE-EeCCCccccCCEEEEcC
Confidence 777654 33332 222 22 46788885421 1 1244555544 3653 332211 1234799996
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 459 GATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 459 ~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++..+|+|||++++++|+++++..
T Consensus 359 ~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 359 MGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhh
Confidence 667788899999999999998763
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=3.7e-22 Score=198.91 Aligned_cols=393 Identities=13% Similarity=0.063 Sum_probs=250.8
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecC--CCCCHHHHHHHHHHhhcCCCcc-ccccChhh
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFP--SSGSIAGFLGEMLSSGFNVVGF-NWMSSPAA 111 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~l~~~~n~~~~-~~~~~~~~ 111 (486)
|++++...+..||+ .|+.|+++++.++..+|.....+..++|... -.|.....+..+++ .+.+++. ..++|...
T Consensus 30 P~~~~~~~~l~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~hy~P~v~~~~~~~~T-aYTPYQPaEiSQG~LQ 106 (471)
T d1wyub1 30 PKEHLREVPPRLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHEEAARLFA-DLHPYQDPRTAQGALR 106 (471)
T ss_dssp CGGGBCSSCCCCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHHHHHHTTS-SCCTTSCGGGCHHHHH
T ss_pred CHHHHcCCCCCCCC--CCHHHHHHHHHHHHhCCCCccccccCCccccCccCcchhhhHHHHHh-ccCCCCCHHHHHHHHH
Confidence 55666666778884 8999999999998888865545556667221 11333333444443 3456653 55666666
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
..+|.+ .++++|.|++.. +..+..|+| |...|+.+++....++ +. .....+++++...|.........
T Consensus 107 alfEfQ--tmi~eLTGMdva-------NaS~yDGat-A~aeA~~ma~r~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 174 (471)
T d1wyub1 107 LMWELG--EYLKALTGMDAI-------TLEPAAGAH-GELTGILIIRAYHEDR-GE-GRTRRVVLVPDSAHGSNPATASM 174 (471)
T ss_dssp HHHHHH--HHHHHHHTCSEE-------ECCCSSHHH-HHHHHHHHHHHHHHHT-TC-TTTCCEEEEETTSCTHHHHHHHH
T ss_pred HHHHHH--HHHHHHhCCCcc-------ccccchHHH-HHHHHHHHHHHHhhhc-cc-ccccccccCCcccccceeeeeec
Confidence 677766 999999999875 556666665 4456666665433222 11 11334555666666667777777
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
.+. .++.++.+. .+..|.+.++..+.+++ ..++++.+++..+..+.++++++++++.|..+++|++...
T Consensus 175 ~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~------a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~ 243 (471)
T d1wyub1 175 AGY---QVREIPSGP--EGEVDLEALKRELGPHV------AALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLN 243 (471)
T ss_dssp TTC---EEEEECBCT--TSSBCHHHHHHHCSTTE------EEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred ccc---eeecccccc--cccccchhhhhhhhccc------cceeeccCCCcccccchhhhhHHHHHhccccccccccchh
Confidence 777 888888764 45889999988765543 3566776666544445699999999999999999987544
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCC-----CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccc
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTT-----LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQI 346 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-----~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 346 (486)
.......... .++|.++++.|+.|+.| +++|++.++++-. +..|+.+..............+..+
T Consensus 244 ~~~~l~~p~~-----~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~-----R~~PGRiV~~~~~~~~~~~~REqhI 313 (471)
T d1wyub1 244 AIMGWARPGD-----MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA-----PYLPVPLVERGEEGFYLDFDRPKSI 313 (471)
T ss_dssp GTTTTCCHHH-----HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG-----GGCCSCEEEECSSCEEEECCCTTCC
T ss_pred hhhhccccCc-----ccccccccccccccccccccccccccceeehhhhh-----ccCCCceecCCCccccccCCCcccc
Confidence 3322211122 27899999999988776 3467777776522 3344444322111100000011011
Q ss_pred ----cCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCC
Q 038818 347 ----TLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKA 420 (486)
Q Consensus 347 ----~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~ 420 (486)
.|+-. ..++.++.++..+|.+|++++.+.+..+|+|++++|+. +|+++..+ +.++.+.+......
T Consensus 314 rRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~~~~~~-------- 384 (471)
T d1wyub1 314 GRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQPPEGF-------- 384 (471)
T ss_dssp CCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEBCSTTC--------
T ss_pred cchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeecCCCCC--------
Confidence 12221 12356777888899999999999999999999999976 69987543 45566665543210
Q ss_pred ccchHHHHHHHHHHHHhcCcEEEeeeeE---CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 421 NEGANELNRKLLESINASGQLYVSHGMV---AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 421 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
. ...+.++|.+.|+. .++.+ .+++.+-+|++ ...|++|||+++++|++++++
T Consensus 385 --~----~~~i~k~L~~~G~~--~~~~~~p~~~~~~llv~vT-E~~tkedID~lv~aL~~i~~e 439 (471)
T d1wyub1 385 --R----ALDLAKGLLELGFH--PPTVYFPLIVKEALMVEPT-ETEAKETLEAFAEAMGALLKK 439 (471)
T ss_dssp --C----HHHHHHHHHHTTCC--CCEESCSTTSTTCEEECCC-TTSCHHHHHHHHHHHHHHHTS
T ss_pred --C----HHHHHHHHHHcCCC--CCcccCcCCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHh
Confidence 1 22355566667863 23221 23556888986 577888999999999999864
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=6.8e-23 Score=202.40 Aligned_cols=332 Identities=11% Similarity=0.010 Sum_probs=218.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH--
Q 038818 108 SPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL-- 185 (486)
Q Consensus 108 ~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~-- 185 (486)
++.+.++..++.+.++++++..... .....+||+|||+++..++...... ..+++.|++....|++.
T Consensus 31 ~~~f~~~~~~~~~~~r~~~~~~~~~---~~~~i~~t~sgT~a~~~~~~~l~~~--------~~~gd~vlv~~~~~~~~~~ 99 (382)
T d2bkwa1 31 SPEFVSIFQRVLKNTRAVFKSAAAS---KSQPFVLAGSGTLGWDIFASNFILS--------KAPNKNVLVVSTGTFSDRF 99 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCGGG---TCEEEEEESCTTHHHHHHHHHHSCT--------TCSCCEEEEECSSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcCC---CCeEEEEeCcHHHHHHHHHHHHHHh--------cCCCCceEEEEechhhhhh
Confidence 5677788888999999999852110 0126899999999987766654211 11566777777888773
Q ss_pred HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhC--ceE
Q 038818 186 QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYS--IWV 263 (486)
Q Consensus 186 ~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g--~~l 263 (486)
...++..|. .+..+...+. ....+.+.+++++.+.. +.++++++.+|.+|...|+++++++|++++ +++
T Consensus 100 ~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~ 170 (382)
T d2bkwa1 100 ADCLRSYGA---QVDVVRPLKI-GESVPLELITEKLSQNS-----YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFF 170 (382)
T ss_dssp HHHHHHTTC---EEEEECCSST-TSCCCHHHHHHHHHHSC-----CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEE
T ss_pred hhhcccccc---ccccccccCC-CCccchhHHHHHhhhcc-----chheeeeeccccccccccchhhhhhccccccceee
Confidence 445666677 6666654432 23678888888876532 347999999999999999999999998875 999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhc-----CCcccccCccC-CCC-
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALS-----TNPEFLRNKAS-DSK- 336 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~-----~~~~y~~~~~~-~~~- 336 (486)
|||++++.+....+--. .++|.+++++|||+++|.|+|+++++++.... ... ....|...... ...
T Consensus 171 ~vDa~qs~g~~pid~~~------~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 243 (382)
T d2bkwa1 171 VVDAVCSIGCEEFEFDE------WGVDFALTASQKAIGAPAGLSISLCSSRFMDY-ALNDSKNGHVHGYFSSLRRWTPIM 243 (382)
T ss_dssp EEECTTTTTTSCCCTTT------TTCSEEEEESSSTTCCCSCEEEEEECHHHHHH-HTCHHHHCCCSCSTTCHHHHHHHH
T ss_pred eeecccccccccccccc------cCeeEEeecccccCcCCCchhhhhccHHHHhh-hhhcccCCCcccchhhhhhhhhhh
Confidence 99999988877664221 17999999999999999999999999875421 111 11111111000 000
Q ss_pred CccCCCCccccCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC--C---CeeEEEEEeec
Q 038818 337 QVVDYKDWQITLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP--R---NFAVVCFRVLP 410 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~---~~~~v~f~~~~ 410 (486)
.......-....+-. ....++-.+++.+..+|...+.++..++++++++.+.+..++..+.. + ...+++|....
T Consensus 244 ~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~ 323 (382)
T d2bkwa1 244 ENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD 323 (382)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC
T ss_pred hcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC
Confidence 000000000000101 01245556677777788888999999999999999988767666542 1 12456666542
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 411 SASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
...+.+.|.++|+. ++.+.. .+..++|++.+.+.++++||+++++.|+.+...|-+
T Consensus 324 -----------------~~~~~~~L~~~gi~-i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 324 -----------------PPDVIAFLKSHGVV-IAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp -----------------HHHHHHHHHHTTEE-CBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred -----------------HHHHHHHHHHCCeE-EECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 12455566677864 443322 235679999767788888999999999877666543
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.89 E-value=1.4e-22 Score=200.35 Aligned_cols=332 Identities=12% Similarity=0.078 Sum_probs=227.3
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+......|....+..++.+.+.+|+.+..|++... .+.++|+|+++++..++.+..+
T Consensus 46 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~-----~~i~it~G~~~al~~~~~~~~~-------- 112 (388)
T d1j32a_ 46 KHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA-----DNILVTNGGKQSIFNLMLAMIE-------- 112 (388)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCC-----ceEEEcCCHHHHHHHHHHHHhC--------
Confidence 445566666665545567766677889999999999998876431 3789999999998777665543
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|+++.+++..+...++..|. .++.++.+.++++.+|+++|++++++. +.+++++.++||||.+-
T Consensus 113 ---~gd~Vlv~~P~y~~~~~~~~~~~~---~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~~P~NPTG~~~ 180 (388)
T d1j32a_ 113 ---PGDEVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVY 180 (388)
T ss_dssp ---TTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCcHHHHHHHHHhcC---eEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCCCCccc
Confidence 677888999999999999999998 899999876566899999999988653 34788888999999985
Q ss_pred C---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCC---CCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 248 P---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIE---GADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 248 p---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~---~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
+ +++|+++|+++|+++++|.+|+......+.......... .-..+..++.|.++.| .-+|+++..++ .....
T Consensus 181 ~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~-~~~~~ 259 (388)
T d1j32a_ 181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP-LVKAA 259 (388)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHH-HHHHH
T ss_pred chhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHH-HHHHH
Confidence 5 778888899999999999999665443322222111111 1124567789998855 56888776433 33222
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS--FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~--~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
.... .+... .......+++... .+.+.+++..+...+..+.+.+.|++++++++. +
T Consensus 260 ~~~~-~~~~~--------------------~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~ 317 (388)
T d1j32a_ 260 TKIQ-GHSTS--------------------NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECP-K 317 (388)
T ss_dssp HHHH-HTTTC--------------------SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC-C
T ss_pred HHhh-hhccc--------------------cccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEec-C
Confidence 1110 01000 1122222233222 356778888889999999999999999888865 4
Q ss_pred CCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 399 RNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 399 ~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
|+.+.+.| .+.... . + ..++.+++. +.|+.+.++..+...+++|+++. ++++++++.++.|+
T Consensus 318 p~gg~~l~~~l~~~~---------~--~--~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~---~~~e~l~~al~rl~ 381 (388)
T d1j32a_ 318 PDGAFYMFPSIAKTG---------R--S--SLDFCSELLDQHQVATVPGAAFGADDCIRLSYA---TDLDTIKRGMERLE 381 (388)
T ss_dssp CCBTTEECCBCGGGT---------C--C--HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC---SCHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCC---------C--C--HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe---CCHHHHHHHHHHHH
Confidence 55555554 333211 1 1 123444443 45876666666666789999984 46779999999999
Q ss_pred HHHHHHh
Q 038818 477 EKLDGIL 483 (486)
Q Consensus 477 ~~~~~l~ 483 (486)
++++.|+
T Consensus 382 ~~l~~l~ 388 (388)
T d1j32a_ 382 KFLHGIL 388 (388)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998874
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=2.3e-21 Score=190.63 Aligned_cols=373 Identities=14% Similarity=0.119 Sum_probs=240.9
Q ss_pred hhHHhhcCCCCCCCCCCCHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHH------HHhhcCCCccccccC
Q 038818 35 PGYLRKRLPESAPYNPEPIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEM------LSSGFNVVGFNWMSS 108 (486)
Q Consensus 35 p~~~~~~~~~~~p~~~~~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~------l~~~~n~~~~~~~~~ 108 (486)
|+.++ +-+..||+ +.|+.|+++++.++..++.... ..|.|--...--.|+.+.+. ++++ -+... +.+
T Consensus 31 P~~~~-~~~~~lp~-~~sE~e~~r~~~~ls~kN~~~~--~~fig~G~~~~~~p~~i~~~~~~~~~~t~y-tPyqp--E~s 103 (437)
T d1wyua1 31 PKEIL-SPPIDLPE-PLPEWKVLEELRRLAAQNLPAH--KAFLGGGVRSHHVPPVVQALAARGEFLTAY-TPYQP--EVS 103 (437)
T ss_dssp CGGGS-SCCCCCCC-CCCHHHHHHHHHHHHHTSCCCT--TCCCCSSCCCCCCCHHHHHHHTSHHHHHCC-SCCSG--GGC
T ss_pred cHHHh-cCCCCCCC-CCCHHHHHHHHHHHHhCCCCcC--ccccCcccCCceeCHHHHHHHhChhhhhhC-CCcch--HHH
Confidence 67774 44678884 4799999999999876664322 23555322233334444433 3322 22222 345
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----
Q 038818 109 PAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA---- 184 (486)
Q Consensus 109 ~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s---- 184 (486)
.+.-++-.+...|++++.|++.. ......| ..|...|+.+++... .+..++++...|.+
T Consensus 104 QG~Lq~l~e~q~~l~eltGmd~~-------n~s~~~g-a~a~~~~~~~~~~~~---------~~~~~~v~~~~~p~~~~v 166 (437)
T d1wyua1 104 QGVLQATFEYQTMIAELAGLEIA-------NASMYDG-ATALAEGVLLALRET---------GRMGVLVSQGVHPEYRAV 166 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSEE-------CSCBSSH-HHHHHHHHHHHHHHH---------TCCEEEEETTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCcc-------ccCchHH-HHHHHHHHHHHHhhh---------cccccccccccChHHhhh
Confidence 55556666777999999999864 3344444 456677887776643 34456778888876
Q ss_pred HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEE
Q 038818 185 LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVH 264 (486)
Q Consensus 185 ~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lh 264 (486)
+...+...|+ +++.+|.+.. ..+.++ +.++ ...|+++.++| .|.++++++|++++++.|..++
T Consensus 167 ~~t~a~~~g~---~vv~v~~~~~---~~~~~~----~~~~------~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~ 229 (437)
T d1wyua1 167 LRAYLEAVGA---KLLTLPLEGG---RTPLPE----VGEE------VGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFV 229 (437)
T ss_dssp HHHHHHHTTC---EEEEECCBTT---BCCCCC----CCTT------EEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEE
T ss_pred hhhhccccee---eEEeeecccc---cchhhh----hccc------eeEEEEccccc-cccccchHHHHHHhhhccceEE
Confidence 3445677899 9999998742 333322 2232 45788888866 6999999999999999999988
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc-----eEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC-----CCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~-----g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
+|+..-+.....+. ... ++|.++.+ ||.|+.|.++ |++.++++-. ...|+++.....+..+..
T Consensus 230 ~~ad~~al~~l~~P-g~~-----GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~-----r~lPgrivg~s~d~~G~~ 297 (437)
T d1wyua1 230 AVADPLSLGVLKPP-GAY-----GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFV-----RQLPGRLVSETVDVEGRR 297 (437)
T ss_dssp EECCTTGGGTBCCH-HHH-----TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGG-----GGCCSCCEEEEEBTTSCE
T ss_pred eeechhhhhccccc-ccc-----ccceEeec-cceeccccCCCcCccccccccchhh-----ccccccccccccccCCcc
Confidence 88765433333221 121 89999999 7777766654 8888886522 334555543221111111
Q ss_pred CCC--Cccc------------cCCCC-CCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeE
Q 038818 340 DYK--DWQI------------TLSRR-FRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAV 403 (486)
Q Consensus 340 ~~~--~~~~------------~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~ 403 (486)
.+. ..+. .|+.. ..++..|+++..+|.+|++++.++...+|+|++++|.++++++++.+ +.++.
T Consensus 298 ~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~e 377 (437)
T d1wyua1 298 GFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNE 377 (437)
T ss_dssp EEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSE
T ss_pred cceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeE
Confidence 110 0010 01111 12356788889999999999999999999999999999999987643 44566
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee---ECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM---VAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+++.+... ...+.++|.+.|+. .++. +.+...+.++++ ...|++|||+++++|++++
T Consensus 378 f~v~~~~~----------------~~~i~k~L~d~G~~--~~~~~~~~~~~~~lli~~T-E~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 378 FALALPKD----------------PEAVRRALAERGFH--GATPVPREYGENLALFAAT-ELHEEEDLLALREALKEVL 437 (437)
T ss_dssp EEEECSSC----------------HHHHHHHHHHTTCC--CCEECCTTSCSSEEEEECC-TTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCCC----------------HHHHHHHHHhCCCC--CCcccccCCCCCeEEEecC-CCCCHHHHHHHHHHHHHhC
Confidence 66665322 23566677777862 2332 234567889986 5778889999999999863
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=3.4e-21 Score=186.83 Aligned_cols=337 Identities=15% Similarity=0.057 Sum_probs=209.7
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHH
Q 038818 79 YFPSSGSIAGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAAR 158 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~ 158 (486)
+.|+|...+..+.+.+.. +... ..++.+.++.+++++.++++++.+.. ..++++|||.++-.++....
T Consensus 4 ~~PGP~~v~~~V~~am~~---~~~~--hr~~~f~~i~~~~~~~l~~ll~~~~~-------~i~~~gsgT~a~e~~~~nl~ 71 (348)
T d1iuga_ 4 LTPGPVRLHPKALEALAR---PQLH--HRTEAAREVFLKARGLLREAFRTEGE-------VLILTGSGTLAMEALVKNLF 71 (348)
T ss_dssp CSSSSCCCCHHHHHHHHS---CCCC--TTSHHHHHHHHHHHHHHHHHHTCSSE-------EEEEESCHHHHHHHHHHHHC
T ss_pred cCCCCCCCCHHHHHHhcC---CCCC--CCCHHHHHHHHHHHHHHHHHhCCCCC-------EEEEeCchHHHHHHHHHhcc
Confidence 556655544444333322 1111 13567888889999999999997654 68899999998866655543
Q ss_pred HHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEe
Q 038818 159 DQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCA 236 (486)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~ 236 (486)
. ++..+++....+++ +.+.++.+|. ++..+..+... ..+++.+. ...+..|++
T Consensus 72 ~-----------~g~~vlv~~~G~f~~~~~~~a~~~~~---~~~~~~~~~g~--~~~~~~~~---------~~~~~~v~~ 126 (348)
T d1iuga_ 72 A-----------PGERVLVPVYGKFSERFYEIALEAGL---VVERLDYPYGD--TPRPEDVA---------KEGYAGLLL 126 (348)
T ss_dssp C-----------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTTC--CCCTTTSC---------CSSCSEEEE
T ss_pred c-----------ccccceeecchHHHHHHHHHHHhcCc---ccccccccCCC--cccccccc---------ccCCCeeEE
Confidence 2 34444445567776 6667788888 88888776432 33433321 123457999
Q ss_pred ecCCccccccCCchHHHHHHHHhC--ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc
Q 038818 237 TVGTTAITTVDPLGPLCDIAKRYS--IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 237 ~~gtt~~G~idpl~~I~~i~~~~g--~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
++..|.+|.+.|+++|+++|++++ .+++||++.+.+....+- .. .++|.+.+++||++++|.|.|+++++++
T Consensus 127 ~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~-d~-----~~iD~~~~~sqK~l~gppG~~~v~~s~~ 200 (348)
T d1iuga_ 127 VHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVAL-EA-----MGVDAAASGSQKGLMCPPGLGFVALSPR 200 (348)
T ss_dssp ESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCS-GG-----GTCSEEEEESSSTTCCCSCEEEEEECHH
T ss_pred EecchhhhhhccHHHHHHHHHhhhccceeechhhhccccccccc-cc-----ccCCEEEeccccceecCCceeeeeechH
Confidence 999999999999999999999985 799999988766554432 11 1799999999999999999999999877
Q ss_pred hHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 038818 315 NALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRF 393 (486)
Q Consensus 315 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 393 (486)
.. . .....+.|+.....-.........+ +-+. ...++-.+++.+-.++ .+..++.......++..++.. ++
T Consensus 201 ~l-e-~~~~~~~~~dl~~~~~~~~~~~~~~----Tp~v~~i~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-gl 272 (348)
T d1iuga_ 201 AL-E-RLKPRGYYLDLARELKAQKEGESAW----TPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEEG-GL 272 (348)
T ss_dssp HH-H-TCCCCSSTTCHHHHHHHHTTTCCSS----CCCHHHHHHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HH-h-hhcccccccchhhhhhhhccCcccc----cccchHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhh-hh
Confidence 43 2 2222222221110000000000001 1010 1134444555443343 344444444455566666554 78
Q ss_pred EEecCCCee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee--eECCEeEEEEEecCCCCcHHHHHH
Q 038818 394 EIVAPRNFA-VVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG--MVAGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 394 ~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~~~~~~~lR~~~~~~~tt~~did~ 470 (486)
++.....++ +++|+++... + ...+.+.|.++|+. +.++ .+.+ ..+|++.++ ..+.+|+++
T Consensus 273 ~~~~~~~s~~v~~~~~P~g~------------~--~~~~~~~l~~~gi~-i~~G~~~l~~-~~~RIg~mG-~~~~~d~~~ 335 (348)
T d1iuga_ 273 RPVPKRFSPAVAAFYLPEGV------------P--YARVKEAFAQRGAV-IAGGQGPLKG-KVFRLSLMG-AYDRYEALG 335 (348)
T ss_dssp EESCSSBCTTCEEEECCTTC------------C--HHHHHHHHHTTTEE-CEECCGGGTT-TEEEECCCS-SCCHHHHHH
T ss_pred ccChhhcCCeEEEEECCCCC------------C--HHHHHHHHHHCCeE-EEcCccccCC-CEEEEeCCC-CCCHHHHHH
Confidence 876544343 5677775321 1 24667777788864 3332 2223 479999986 556779999
Q ss_pred HHHHHHHHHHHHh
Q 038818 471 AWKVVQEKLDGIL 483 (486)
Q Consensus 471 ~i~~l~~~~~~l~ 483 (486)
+++.|++++++++
T Consensus 336 ~~~~l~~~l~~~~ 348 (348)
T d1iuga_ 336 VAGMFREVLEEIL 348 (348)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=1.4e-21 Score=192.96 Aligned_cols=326 Identities=14% Similarity=0.067 Sum_probs=213.4
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
|..+.+.+..++..+...|....+..++.+.+.+|+.+..|.+-+. .+.++|+|+++++..++.+..+
T Consensus 46 p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~-----~~i~it~G~~~al~~~~~~l~~------- 113 (382)
T d1b5pa_ 46 PEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP-----EETIVTVGGSQALFNLFQAILD------- 113 (382)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG-----GGEEEESHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhccccccc-----ccceecCCHHHHHHHHHHHhCC-------
Confidence 3445666666665555677777777899999999999988875331 3789999999888776666543
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++..++..+...++..|. +++.+|.++.+++.+|+++|++++++. +.+++++.++||||.+
T Consensus 114 ----~gd~vl~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPTG~~ 180 (382)
T d1b5pa_ 114 ----PGDEVIVLSPYWVSYPEMVRFAGG---VVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAV 180 (382)
T ss_dssp ----TTCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEECCCCcHHHHHHHHHhcC---eEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCCcchh
Confidence 567788888999999999999999 999999876556899999999887643 3467788899999998
Q ss_pred C---CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhc
Q 038818 247 D---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 247 d---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~ 322 (486)
- .+++|+++|++||+|++.|.+|+......+.... ......-..+..++.|.++.| .-+|+++..++ .+.....
T Consensus 181 ~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~-~i~~~~~ 258 (382)
T d1b5pa_ 181 YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP-GRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKE-VIKAMAS 258 (382)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG-GGTCTTTEEEEEESTTTTTCGGGCCEEEECCHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCH-HHcCCCCEEEEecchhhccCcHhheEEEEECHH-HHHHHHH
Confidence 4 4788999999999999999999765432222111 111112224455789999855 66898876543 3322211
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH-----hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS-----FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~-----~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
... +... ............. .....+....+....+.+.+.+.+.+. ++++.
T Consensus 259 ~~~-~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~- 315 (382)
T d1b5pa_ 259 VSR-QSTT--------------------SPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAV- 315 (382)
T ss_dssp HHH-TTTC--------------------SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-
T ss_pred HHH-hccc--------------------CcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEe-
Confidence 100 0000 0011111111111 112334444555566677777777775 67764
Q ss_pred CCCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 398 PRNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 398 ~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
+|+.+.+ .+.+.+... + ...+.+.+.++|+++.++..+.+.+++|+++. +++++|++.++.|.
T Consensus 316 ~p~gg~~~~~~~~~~~~-----------~--~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~---~~~e~l~~al~rl~ 379 (382)
T d1b5pa_ 316 RPSGAFYVLMDTSPIAP-----------D--EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA---TSEENLRKALERFA 379 (382)
T ss_dssp CCSBTTEEEEECTTTCS-----------S--HHHHHHHHHHTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHGG
T ss_pred cCCceEEEeEeCCCCCC-----------C--HHHHHHHHHHCCEEEEeCcccCCCCeEEEEEc---CCHHHHHHHHHHHH
Confidence 4554444 444543210 1 23456677788987666666666779999984 35678888888876
Q ss_pred HH
Q 038818 477 EK 478 (486)
Q Consensus 477 ~~ 478 (486)
++
T Consensus 380 ~~ 381 (382)
T d1b5pa_ 380 RV 381 (382)
T ss_dssp GG
T ss_pred Hh
Confidence 64
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=5e-21 Score=189.26 Aligned_cols=331 Identities=13% Similarity=0.037 Sum_probs=212.3
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
|..+.+.+...++.....|....+..++.+.+.+|+.+..+..... ...+++|+|+++++..++.+..+
T Consensus 40 p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~----~~~i~~t~G~~~~l~~~~~~l~~------- 108 (388)
T d1gdea_ 40 PQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADP----KTEIMVLLGANQAFLMGLSAFLK------- 108 (388)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT----TTSEEEESSTTHHHHHHHTTTCC-------
T ss_pred CHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCC----hheeeeccCcchHHHHHHHHhcC-------
Confidence 3455666666665544567666667889999999998876643210 12688999999998777665543
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|++...+|..+..+++.+|. +++.+|+++++++.+|+++|++++++. +.+++++.++||||.+
T Consensus 109 ----~gd~vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPtG~~ 175 (388)
T d1gdea_ 109 ----DGEEVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAV 175 (388)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEECCCCcHHHHHHHHHcCC---EEEEeecccccCCCCCHHHHHHhCccC------CeEEEECCCcCCCCCc
Confidence 677888888999999999999999 999999987667899999999988653 3478888999999999
Q ss_pred C---CchHHHHHHHHhCceEEeeccccchhccCccchhhh--cCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 247 D---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFI--DGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 d---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~--~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
- .+++|+++|++|++++++|++|+......+...... .....-..+..++.|.++.| .-+|+++..++.. ...
T Consensus 176 ~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~-~~~ 254 (388)
T d1gdea_ 176 LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWII-ERM 254 (388)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccch-hhh
Confidence 4 578899999999999999999976543322222111 11111124566789998744 6789887765422 111
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhch----HHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGV----ANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
......... ....+........+.. +.+.+..++..+....+.+.|... +++..
T Consensus 255 ~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 312 (388)
T d1gdea_ 255 VKFQMYNAT---------------------CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTV 312 (388)
T ss_dssp HHHHHTTTC---------------------SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCC
T ss_pred hhccccccc---------------------cccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-ccccc
Confidence 110000000 0112222222222221 234455556666777788888775 55544
Q ss_pred cCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHH
Q 038818 397 APRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 397 ~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i 472 (486)
.|..+.+.| ++.+.. ....++.+++. +.|+.+.++..+ .+.+++|++++ ++++++++.+
T Consensus 313 -~p~gg~fl~~~l~~~~-------------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~---~~~e~l~~al 375 (388)
T d1gdea_ 313 -KPKGAFYIFPRIRDTG-------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA---TAYEKLEEAM 375 (388)
T ss_dssp -CCCBTTEECCBCGGGT-------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHH
T ss_pred -CCCceEEEEEECCCCC-------------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec---CCHHHHHHHH
Confidence 444444433 443211 11234555554 457655544433 23678999984 3567999999
Q ss_pred HHHHHHHHH
Q 038818 473 KVVQEKLDG 481 (486)
Q Consensus 473 ~~l~~~~~~ 481 (486)
+.|++++++
T Consensus 376 ~rL~~~l~e 384 (388)
T d1gdea_ 376 DRMERVLKE 384 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.85 E-value=5.7e-20 Score=184.06 Aligned_cols=328 Identities=13% Similarity=0.093 Sum_probs=211.9
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 184 (486)
|....+..++.+.+.+|+.+.+|..... ...++++|+|+++++..++.+..+ +++.|+++...|..
T Consensus 80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~---~pe~I~it~G~~~al~~~~~~l~~-----------pGd~Vlv~~P~y~~ 145 (431)
T d1m7ya_ 80 FQDYHGLPAFKKAMVDFMAEIRGNKVTF---DPNHLVLTAGATSANETFIFCLAD-----------PGEAVLIPTPYYPG 145 (431)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTSSCC---CGGGEEEEEHHHHHHHHHHHHHCC-----------TTCEEEEEESCCTT
T ss_pred CcCCcCcHHHHHHHHHHHHHHhCCCCCC---CcceEEECCCHHHHHHHHHHHhcC-----------CCCEEEEeCCCchh
Confidence 3333345688889999999998743211 013789999999999877776543 67788888889988
Q ss_pred HHHHHHH-cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhC
Q 038818 185 LQKAAQI-AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYS 260 (486)
Q Consensus 185 ~~~a~~~-~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g 260 (486)
....+.. .|+ +++.+++++++.+.+|++++++++++..+.+..+.+++++.++|++|.+-+ +++|.++|+++|
T Consensus 146 ~~~~~~~~~g~---~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~ 222 (431)
T d1m7ya_ 146 FDRDLKWRTGV---EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKG 222 (431)
T ss_dssp HHHHTTTTTCC---EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCc---eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccC
Confidence 8888765 467 889999887666899999999999998888888888999999999999855 888899999999
Q ss_pred ceEEeeccccchhccCccchhhhc---C------CCCC--CceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccc
Q 038818 261 IWVHVDAAYAGSACICPEFRHFID---G------IEGA--DSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFL 328 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~---~------~~~a--Dsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~ 328 (486)
+++++|++|+....-.+.+...+. . .... -.+..+..|.++.| .-+|+++..++... ........+.
T Consensus 223 ~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~-~~~~~~~~~~ 301 (431)
T d1m7ya_ 223 IHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATKMSSFG 301 (431)
T ss_dssp CEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH-HHHHHHGGGS
T ss_pred cceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhH-HHHHHHhccc
Confidence 999999999765432222111110 0 0011 14566789999855 56888877655332 2211111110
Q ss_pred cCccCCCCCccCCCCccccCCCCCCchHHHHHH--HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE
Q 038818 329 RNKASDSKQVVDYKDWQITLSRRFRALKLWLVL--RSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF 406 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l--~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f 406 (486)
.. + ......+...+ .....+.+.+..++..+..+.+.+.|++. ++++.. |+.+.++|
T Consensus 302 ~~------------------~-~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~-p~gg~f~w 360 (431)
T d1m7ya_ 302 LV------------------S-SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLN-GNAGLFCW 360 (431)
T ss_dssp CC------------------C-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECC-CCSSSEEE
T ss_pred cc------------------c-ccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEec-CCceeEEE
Confidence 00 0 00001111111 11223455666666777888889999874 898874 44444444
Q ss_pred -EeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 407 -RVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+.... .....+...++.+++.+ .|+.++++..+ .+.+++|+++. ..+++++++.++.|++++++
T Consensus 361 ~~l~~~~--------~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a--~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 361 VDMRHLL--------RSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA--NLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp EECGGGS--------SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS--SSCHHHHHHHHHHHHHHHHH
T ss_pred EECcccc--------ccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC--cCCHHHHHHHHHHHHHHHHH
Confidence 443211 01112233456666654 57655444333 23578999984 34677899999999988765
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.9e-20 Score=180.20 Aligned_cols=332 Identities=11% Similarity=0.028 Sum_probs=207.3
Q ss_pred HHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 89 FLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 89 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
.+.+.+...+......|..... .++.+.+.+|+.+.+|.+.+. .++++|+|+++++..++.+..+
T Consensus 16 ~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~-----~~i~it~G~~~~l~~~~~~l~~--------- 80 (361)
T d1d2fa_ 16 CIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDS-----QTVVYGPSVIYMVSELIRQWSE--------- 80 (361)
T ss_dssp HHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCG-----GGEEEESCHHHHHHHHHHHSSC---------
T ss_pred HHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCc-----ceEEEeCCHHHHHHHHhhhccc---------
Confidence 3455555555433345654444 568888999999999986431 3789999999988665555432
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
+++.|++....|..+..+++..|. +++.++.+.. +++.+|++.+++.+.+. .+.+++.+.++|+||.+-
T Consensus 81 --~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~p~NPTG~~~ 150 (361)
T d1d2fa_ 81 --TGEGVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVW 150 (361)
T ss_dssp --TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCC
T ss_pred --cccccccccccccchhHHHHhhcc---eEEeecccccccccccccccchhhcccC-----CceeEEeccccccccccc
Confidence 667788888999999999999999 8888887642 35679999999888542 245788889999999885
Q ss_pred C---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCC-ceeeccccccCCC-CcceEEEeeCchHHHHHhc
Q 038818 248 P---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD-SFSLNAHKWFFTT-LDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 248 p---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aD-si~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~ 322 (486)
+ +++|+++|+++|+++++|++|..+...... ...+.....-+ .+..+..|.++.| ..+|++++...........
T Consensus 151 s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~ 229 (361)
T d1d2fa_ 151 TCDELEIMADLCERHGVRVISDEIHMDMVWGEQP-HIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS 229 (361)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC-CCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhheeeeeccccccccccccc-ccccccccccccccccccccccccccccceeeecchhHHHHHHhh
Confidence 5 778999999999999999999765332211 11111111222 4556677876644 4678877766543322211
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHH--HhchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecCC
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLR--SFGVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAPR 399 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~--~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~ 399 (486)
. +.... ..+ ......+.+++. ....+..++......++++.+.+.+.+ .+++.+. +|
T Consensus 230 ~---~~~~~---------------~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~p 289 (361)
T d1d2fa_ 230 A---LKGRD---------------GLS-SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ-IP 289 (361)
T ss_dssp H---HHTTS---------------CCC-SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC-CC
T ss_pred h---ccccc---------------ccc-cchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhccccccc-cc
Confidence 0 00000 000 011111222221 223455566666666667777666543 4556554 44
Q ss_pred CeeEEE-EEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHH
Q 038818 400 NFAVVC-FRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVV 475 (486)
Q Consensus 400 ~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l 475 (486)
+.+.+. +.+.+... + ...+.++|.+ .|++++.+..+. +.+++|+|+. ++++++++.++.|
T Consensus 290 ~gg~~~~~~l~~~~~-----------~--~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~---~~~e~l~~al~rl 353 (361)
T d1d2fa_ 290 QSTYLAWLDLRPLNI-----------D--DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG---CPRSKLEKGVAGL 353 (361)
T ss_dssp SBCSEEEEECGGGCC-----------C--HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHH
T ss_pred CceeEEEEEccCCCC-----------C--HHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc---CCHHHHHHHHHHH
Confidence 544443 34443210 1 2355666655 477655443332 4678999983 4678999999999
Q ss_pred HHHHHHH
Q 038818 476 QEKLDGI 482 (486)
Q Consensus 476 ~~~~~~l 482 (486)
.++++++
T Consensus 354 ~~~l~~l 360 (361)
T d1d2fa_ 354 INAIRAV 360 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998876
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.85 E-value=3.7e-20 Score=185.27 Aligned_cols=324 Identities=12% Similarity=0.095 Sum_probs=210.0
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH
Q 038818 105 WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA 184 (486)
Q Consensus 105 ~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 184 (486)
|....+..++.+.+.+|+.+.+|..... .....++|+|+++++..++.+..+ +++.|+++..+|.+
T Consensus 79 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~---~~e~Ivit~G~~~al~~~~~~l~~-----------~Gd~Vlv~~P~y~~ 144 (428)
T d1iaya_ 79 FQDYHGLPEFRKAIAKFMEKTRGGRVRF---DPERVVMAGGATGANETIIFCLAD-----------PGDAFLVPSPYYPA 144 (428)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTCSCC---CTTSCEEEEHHHHHHHHHHHHHCC-----------TTCEEEEESSCCTT
T ss_pred CcCCcchHHHHHHHHHHHHHHhCCCCCC---ChhhEEEcCCHHHHHHHHHHHhCC-----------CCCEEEEccCCchH
Confidence 3333445789999999999998853210 012689999999998777766543 67788889899988
Q ss_pred HHHHHHHc-CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhC
Q 038818 185 LQKAAQIA-GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYS 260 (486)
Q Consensus 185 ~~~a~~~~-G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g 260 (486)
+...+... |+ +++.++++..+++.+|+++++++++...+.+..+.+++++.++||+|.+-+ +++|+++|++||
T Consensus 145 ~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~ 221 (428)
T d1iaya_ 145 FNRDLRWRTGV---QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHN 221 (428)
T ss_dssp HHHHTTTTTCC---EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCC---eEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCc
Confidence 88877654 77 899999987778999999999999887777777788899999999998855 788999999999
Q ss_pred ceEEeeccccchhccCccchhh---hc----CCCC--CCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccC
Q 038818 261 IWVHVDAAYAGSACICPEFRHF---ID----GIEG--ADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRN 330 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~---~~----~~~~--aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~ 330 (486)
+++++|++|+......+.+... .. .... -..+..++.|.++.| ..+|+++..++.... .......+..
T Consensus 222 ~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~-~~~~~~~~~~- 299 (428)
T d1iaya_ 222 IHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVN-CARKMSSFGL- 299 (428)
T ss_dssp CEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHH-HHHHHHTTSC-
T ss_pred EEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhh-hhhhhhcccc-
Confidence 9999999997654322221111 00 0111 124677889987754 568888776654432 2211110000
Q ss_pred ccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEE
Q 038818 331 KASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-----GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVC 405 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~ 405 (486)
............+ ..+.+++..+...+..+.+.+.|+.. |+++. +|+.+.++
T Consensus 300 ---------------------~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~-~p~gg~f~ 356 (428)
T d1iaya_ 300 ---------------------VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCL-KNNAGLFC 356 (428)
T ss_dssp ---------------------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC-CCSSSSEE
T ss_pred ---------------------cccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEEe-cCCcceEE
Confidence 0111111111111 12344555666667788888988774 88875 45545544
Q ss_pred -EEeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 406 -FRVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 406 -f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.+.+.. .....+...++.++|.+ .|+++.++..+ .+.+++|+++. ..++++|++.++.|++++.
T Consensus 357 w~~l~~~~--------~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a--~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 357 WMDLRPLL--------RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA--NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp EEECGGGC--------SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS--SSCHHHHHHHHHHHHHHHH
T ss_pred EEECcccc--------ccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC--CCCHHHHHHHHHHHHHHHh
Confidence 4554321 01112223356666664 47654444333 34789999984 3466789999999988764
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=3.2e-21 Score=186.11 Aligned_cols=312 Identities=13% Similarity=0.053 Sum_probs=187.4
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCC
Q 038818 102 GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQT 181 (486)
Q Consensus 102 ~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~ 181 (486)
...|..+|...++|+ ++++++|.+ .+++++|||+||+.|+.+++. ++..+++....
T Consensus 27 ~~~yg~~p~~~~le~----~lA~~~G~~---------~~~~~~sGt~A~~~al~a~~~-----------~g~~~~~~~~~ 82 (343)
T d1m6sa_ 27 DDVYGEDPTINELER----LAAETFGKE---------AALFVPSGTMGNQVSIMAHTQ-----------RGDEVILEADS 82 (343)
T ss_dssp CGGGTCCHHHHHHHH----HHHHHTTCS---------EEEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTC
T ss_pred CcccCCCHHHHHHHH----HHHHHHCCC---------eEEEeCCHHHHHHHHHHHHhc-----------cCCceeccccc
Confidence 445677787777775 578888975 368999999999999887765 45556667778
Q ss_pred chHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeec-CCccccccC---CchHHHHHHH
Q 038818 182 HSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATV-GTTAITTVD---PLGPLCDIAK 257 (486)
Q Consensus 182 H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~-gtt~~G~id---pl~~I~~i~~ 257 (486)
|++....+...+.....+..++.+ .+..|++.+++.+...+.....+..++.+. .+++.|.+. ++.+|+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 159 (343)
T d1m6sa_ 83 HIFWYEVGAMAVLSGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAK 159 (343)
T ss_dssp HHHHSSTTHHHHHTCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred cceeeecccccccccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHH
Confidence 877654433332211145555543 458899999999987765554444444444 455556554 5668888889
Q ss_pred HhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCC
Q 038818 258 RYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQ 337 (486)
Q Consensus 258 ~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 337 (486)
++|+++|+|++++++......... .......+.++++.+|.+++..+.+++..++ ......... .+...
T Consensus 160 ~~g~~~~~D~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~-~~~~~------- 228 (343)
T d1m6sa_ 160 EHGINVHIDGARIFNASIASGVPV-KEYAGYADSVMFCLSKGLCAPVGSVVVGDRD--FIERARKAR-KMLGG------- 228 (343)
T ss_dssp HHTCEEEEEETTHHHHHHHHCCCH-HHHHHTCSEEEEESSSTTCCSSCEEEEECHH--HHHHHHHHH-HHHTC-------
T ss_pred hcCeEEEeccccccccccccccch-hhhccccccccccccccccccccccccccHH--HHhhhHhhC-ccccc-------
Confidence 999999999999775432211111 0111246677888888777665544433332 211111100 00000
Q ss_pred ccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCC
Q 038818 338 VVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGD 417 (486)
Q Consensus 338 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~ 417 (486)
.........+++........+ ..+...+++.++.+.+.++.+.....+...+++.+.+....
T Consensus 229 ---------~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 290 (343)
T d1m6sa_ 229 ---------GMRQAGVLAAAGIIALTKMVD----RLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK----- 290 (343)
T ss_dssp ---------CCSSTHHHHHHHHHHHHHSST----THHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS-----
T ss_pred ---------ccchhHHHHHhhhhhhhhhHH----HHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCc-----
Confidence 000011111222222211222 23344555566666666655555555566788888765432
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
....+|.++|.++|+. +.+. +.+.+|+++ ++.+|+||||+++++|+++++++
T Consensus 291 --------~~a~~l~~~L~~~Gi~-v~~~---~~~~iRi~~-~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 --------VNAHGFIEALRNSGVL-ANAV---SDTEIRLVT-HKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp --------SCHHHHHHHHHHHTEE-CEEE---ETTEEEEEC-CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHCCCE-EecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 1134677788888974 3332 235799987 57899999999999999999886
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.83 E-value=5.7e-20 Score=175.67 Aligned_cols=302 Identities=13% Similarity=0.078 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.++..++++.+++++|.++. .++||+|||+||+.++..... ++..+++....|.++......
T Consensus 34 ~~~~~~lr~~ia~~~g~~~~-------~v~~tsggtean~~a~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 95 (340)
T d1svva_ 34 DSHCAKAARLIGELLERPDA-------DVHFISGGTQTNLIACSLALR-----------PWEAVIATQLGHISTHETGAI 95 (340)
T ss_dssp SHHHHHHHHHHHHHHTCTTS-------EEEEESCHHHHHHHHHHHHCC-----------TTEEEEEETTSHHHHSSTTHH
T ss_pred CHHHHHHHHHHHHHhCCCcc-------eEEEcCCHHHHHHHHHHHHhh-----------hccccccccccceeeeecccc
Confidence 45666788999999999875 789999999999988887654 566677788888887655444
Q ss_pred cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc---CCchHHHHHHHHhCceEEeecc
Q 038818 192 AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV---DPLGPLCDIAKRYSIWVHVDAA 268 (486)
Q Consensus 192 ~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i---dpl~~I~~i~~~~g~~lhvD~a 268 (486)
.+.+. ....+... ....+.+...++..........+..++.+...++.|.+ +++..+.++|+++|.++|+|++
T Consensus 96 ~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a 171 (340)
T d1svva_ 96 EATGH-KVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGA 171 (340)
T ss_dssp HHTTC-CEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred cccce-eeeecccc---cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeecc
Confidence 44422 23333322 23556666666665554444445556666666666666 4566778999999999999999
Q ss_pred ccchhccCccchhhhcC-CCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCcccc
Q 038818 269 YAGSACICPEFRHFIDG-IEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQIT 347 (486)
Q Consensus 269 ~g~~~~~~~~~~~~~~~-~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 347 (486)
+++.....+........ ....+...+.+.|.+..+. +.............. .... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~----------------~~ 229 (340)
T d1svva_ 172 RLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG--EALIILNDALKPNAR----HLIK----------------QR 229 (340)
T ss_dssp THHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC--EEEEECSGGGCTTHH----HHHH----------------HT
T ss_pred ceeeeecccccccccccccccceeeecCCcccccccc--ccccccchhhhhhhh----hhcc----------------cc
Confidence 98766544321111000 1134566666677665543 333333221110000 0000 00
Q ss_pred CCCCCCchHHHHH-HHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHH
Q 038818 348 LSRRFRALKLWLV-LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANE 426 (486)
Q Consensus 348 ~sr~~~~l~~~~~-l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~ 426 (486)
.+....+..++++ +..+.........++...++.++.+.|++. ++++..|+..+++.+.+.+ +
T Consensus 230 ~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~~---------------~ 293 (340)
T d1svva_ 230 GALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN---------------T 293 (340)
T ss_dssp TCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH---------------H
T ss_pred cCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCCH---------------H
Confidence 0111122222222 333455667778888899999999999886 8998878788887776642 2
Q ss_pred HHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 427 LNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 427 ~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
. .+++.+++.....+....+.+++|+|+ ++.+|++|||+++++|+++
T Consensus 294 ~----~~~l~~~~~~~~~~~~~~~~~~vR~s~-~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 294 M----IAELNNDFDMYTVEPLKDGTCIMRLCT-SWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp H----HHHHTTTEECEEEEEETTTEEEEEEEC-CTTCCHHHHHHHHHHHHHC
T ss_pred H----HHHHHHhhhhhcccccCCCCcEEEEEC-CCCCCHHHHHHHHHHHhcC
Confidence 3 334445555434444556789999997 6899999999999999874
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.83 E-value=4.4e-20 Score=182.69 Aligned_cols=335 Identities=10% Similarity=0.044 Sum_probs=217.1
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
|..+.+.+...+......|....+..++.+.+.+|+.+.+|++.+. ...++|+|+++++..++.+..+
T Consensus 48 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-----~~i~i~~G~~~~~~~~~~~~~~------- 115 (395)
T d1xi9a_ 48 PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP-----DDVRVTAAVTEALQLIFGALLD------- 115 (395)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-----GGEEEESHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccc-----cccccccccchhhhhhhhhhcC-------
Confidence 4455666666665444557766777899999999999999986542 3688899998888766655443
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|++...++..+...++..|. +++.+|.+..+++.+|++++++.+.+. +.+|+++.++||||.+
T Consensus 116 ----~Gd~vlv~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~~~~~~~~~------~~~v~l~~P~NPTG~~ 182 (395)
T d1xi9a_ 116 ----PGDEILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGAL 182 (395)
T ss_dssp ----TTCEEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCccccchhhhhhcCC---EEEEEeccccccccchHHHHHHhhccc------ccEEEecCCCCCccch
Confidence 567788888999999999999999 999999776557899999999887643 3478888999999998
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCC-ceeeccccccCCC-CcceEEEeeCch-HHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGAD-SFSLNAHKWFFTT-LDCCCLWVKNPN-ALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aD-si~~~~hK~l~~p-~~~g~~~~~~~~-~~~~~ 320 (486)
-+ +++|+++|++|+++++.|.+|.......+.... ..-..... .+..++.|.++.| .-+|++++.+.. .+...
T Consensus 183 ~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~ 261 (395)
T d1xi9a_ 183 YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISP-GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEV 261 (395)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCH-HHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHH
T ss_pred hhHHHHHHHHhhhhhcCeeEEeccccccccccccccch-hhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHH
Confidence 54 788999999999999999999664332211111 00011222 3455789988855 457887765431 11111
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS--FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP 398 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~--~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 398 (486)
.... ..+... .. ....+...++... .+.+.+++..+...++++.+.+.|++++++.+. +
T Consensus 262 ~~~~-~~~~~~---------------~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~ 322 (395)
T d1xi9a_ 262 REAI-DRLARI---------------RL--CPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTT-K 322 (395)
T ss_dssp HHHH-HHHHHH---------------TC--CSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-C
T ss_pred HHHH-HHhhcC---------------CC--CcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCceec-C
Confidence 0000 000000 00 0111222222222 245678888888899999999999998777654 4
Q ss_pred CCeeEEE-EEeecCCCCCCCCCCccchHHHHHHHHHH-HHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFAVVC-FRVLPSASGLGDGKANEGANELNRKLLES-INASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
|+.+.+. ..+.... .. + ...+..+ +.+.|+++.++..+. +.+++|+++. ++++++++.++.
T Consensus 323 p~gg~~~~~~l~~~~--------~~--~--~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~---~~~e~l~eal~r 387 (395)
T d1xi9a_ 323 PQGAFYIFPKIEVGP--------WK--N--DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL---PPIEILEEAMDR 387 (395)
T ss_dssp CCBSSEECCEECSCS--------CS--S--HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHH
T ss_pred CCeeEEEeEECCCCC--------CC--C--HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec---CCHHHHHHHHHH
Confidence 5544443 3443221 00 1 1123333 345687655544432 3668999984 456789999999
Q ss_pred HHHHHHH
Q 038818 475 VQEKLDG 481 (486)
Q Consensus 475 l~~~~~~ 481 (486)
|++++++
T Consensus 388 l~~~l~e 394 (395)
T d1xi9a_ 388 FEKFMKE 394 (395)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9888764
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=5.1e-20 Score=181.08 Aligned_cols=323 Identities=15% Similarity=0.076 Sum_probs=201.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCch
Q 038818 104 NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHS 183 (486)
Q Consensus 104 ~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 183 (486)
.+..||...++|+ .+++++|.+ .++++++||.|+..|+.+..-+ +++.|+++..+|.
T Consensus 26 ~~~~G~~v~~~E~----~la~~~g~~---------~ai~~~sgt~Al~~al~al~~~----------~gdeVi~~~~~~~ 82 (376)
T d1mdoa_ 26 WITTGPKNQELEA----AFCRLTGNQ---------YAVAVSSATAGMHIALMALGIG----------EGDEVITPSMTWV 82 (376)
T ss_dssp CCSSSHHHHHHHH----HHHHHHCCS---------EEEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCH
T ss_pred CCcCCHHHHHHHH----HHHHHHCcC---------eEEEeCCHHHHHHHHHHHhCCC----------CCCEEEEeccccc
Confidence 3456787777775 578888875 4688899999998888764211 6788999999999
Q ss_pred HHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceE
Q 038818 184 ALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWV 263 (486)
Q Consensus 184 s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~l 263 (486)
+...++...|. .++.++++++ ++.+|++.|+++|.+.+ .+|+++ +..|...|+++|.++|++||+++
T Consensus 83 ~~~~ai~~~g~---~pv~~d~~~~-~~~~d~~~l~~~i~~~t------kaIi~~---h~~G~~~~~~~i~~i~~~~~i~v 149 (376)
T d1mdoa_ 83 STLNMIVLLGA---NPVMVDVDRD-TLMVTPEHIEAAITPQT------KAIIPV---HYAGAPADLDAIYALGERYGIPV 149 (376)
T ss_dssp HHHHHHHHTTC---EEEEECBCTT-TCCBCHHHHHHHCCTTE------EEECCB---CGGGCCCCHHHHHHHHHHHTCCB
T ss_pred ccccchhcccc---ceeeeccccc-ccCCCHHHHHHhcCCCC------eEEEEe---CCCCCccchhHHHHHHHhcCceE
Confidence 99999999999 9999999874 68999999999997654 356655 46899999999999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
+.|+|++.+...... ..|--+...+++.++|++.++ +.|+++++++....+........................
T Consensus 150 IeD~a~a~g~~~~~~----~~g~~g~~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (376)
T d1mdoa_ 150 IEDAAHATGTSYKGR----HIGARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQ 224 (376)
T ss_dssp CEECTTCTTCEETTE----ETTSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------C
T ss_pred EeccchhccCeeCCe----ecccccCccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCccccccccccccccc
Confidence 999999765533221 112224456778889999764 457888888766443321111001000000000000000
Q ss_pred cc-ccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC-----eeEEEEEeecCCCCCCC
Q 038818 344 WQ-ITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN-----FAVVCFRVLPSASGLGD 417 (486)
Q Consensus 344 ~~-~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-----~~~v~f~~~~~~~~~~~ 417 (486)
+. ...+..+....+-+++.....+.+.+.+++..++++++.+.|++++...+..... ...+++.+...
T Consensus 225 ~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 298 (376)
T d1mdoa_ 225 AEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEA------ 298 (376)
T ss_dssp CEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHH------
T ss_pred ccchhcccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccc------
Confidence 00 1111122222222222222346678888999999999999999987665543221 11222222210
Q ss_pred CCCccchHHHHHHHHHHHHhcCcEEE---eeee--------EC----------CEeEEEEEecCCCCcHHHHHHHHHHHH
Q 038818 418 GKANEGANELNRKLLESINASGQLYV---SHGM--------VA----------GIYFIRFAVGATLTEDRHVIAAWKVVQ 476 (486)
Q Consensus 418 ~~~~~~~~~~~~~l~~~l~~~g~~~~---~~~~--------~~----------~~~~lR~~~~~~~tt~~did~~i~~l~ 476 (486)
.......++.+.|.+.|+-.- .+.. .. ....+.+- +++..|++||+++++.|+
T Consensus 299 -----~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP-~~~~lt~~ei~~I~~~i~ 372 (376)
T d1mdoa_ 299 -----RCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLP-LFPDMTESDFDRVITALH 372 (376)
T ss_dssp -----HHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEEC-CCTTCCHHHHHHHHHHHH
T ss_pred -----cchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEcc-CCCCCCHHHHHHHHHHHH
Confidence 000001356777777786311 0100 00 01235553 478889999999999999
Q ss_pred HHH
Q 038818 477 EKL 479 (486)
Q Consensus 477 ~~~ 479 (486)
++.
T Consensus 373 ~i~ 375 (376)
T d1mdoa_ 373 QIA 375 (376)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.82 E-value=1.8e-19 Score=179.43 Aligned_cols=341 Identities=10% Similarity=0.038 Sum_probs=217.6
Q ss_pred HHHHHHHHhhcC-CCccccccChhhHHHHHHHHHHHHHHcCCCCCCcc-CCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 88 GFLGEMLSSGFN-VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLF-SGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 88 ~~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~-~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
..+.+.+...++ .....|....+..++.+.+.+|+.+.++....... -...++++|+|+++++..++.+..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~------ 123 (412)
T d1bw0a_ 50 AAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD------ 123 (412)
T ss_dssp HHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhc------
Confidence 334444444432 23345766666788999999999998765322110 1123789999999998877776543
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
+++.|+++..++......++..|+ +++.+|+++.+++..++++|++++.+. +.+++++.++|+||.
T Consensus 124 -----~Gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~~~l~np~NPtG~ 189 (412)
T d1bw0a_ 124 -----AGDYALVPQPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGS 189 (412)
T ss_dssp -----TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCC
T ss_pred -----cccceeeeeccchhhhhhhhccCc---cccccccccccccchhhHHHHhhhhcc------ccccccccccccccc
Confidence 677888888999999999999999 999999987667899999998876554 347888999999999
Q ss_pred c---CCchHHHHHHHHhCceEEeeccccchhccCccchh---hhcCCCCCC-c-eeeccccccC-CCCcceEEEeeCchH
Q 038818 246 V---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRH---FIDGIEGAD-S-FSLNAHKWFF-TTLDCCCLWVKNPNA 316 (486)
Q Consensus 246 i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~---~~~~~~~aD-s-i~~~~hK~l~-~p~~~g~~~~~~~~~ 316 (486)
+ +.+++|+++|++|++++++|++|.....-...... .....+... . +..++.|.++ ...-+|++++.++..
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~ 269 (412)
T d1bw0a_ 190 NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG 269 (412)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred cchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence 8 45788888999999999999999765432211111 011111222 2 2345789777 445789888765311
Q ss_pred -----HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc--hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC
Q 038818 317 -----LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA--LKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG 389 (486)
Q Consensus 317 -----~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~--l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 389 (486)
+....... .+. ++ .... ..+...+.....+.+.++.++..+.++++.+.|.+
T Consensus 270 ~~~~~~~~~~~~~-~~~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~ 328 (412)
T d1bw0a_ 270 NGPSFLEGLKRVG-MLV-------------------CG-PCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE 328 (412)
T ss_dssp SCHHHHHHHHHHH-HHH-------------------TC-SCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhhhhcccc-ccc-------------------cC-CchhhhhhcccccccccccccccccchhHHHHHHHHHHHHH
Confidence 11100000 000 00 0001 11111222224567788888899999999999988
Q ss_pred CCCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeECCEeEEEEEecCCCCcHHH
Q 038818 390 DNRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMVAGIYFIRFAVGATLTEDRH 467 (486)
Q Consensus 390 ~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~d 467 (486)
.+++++. .|..+.+.| ++....... ... ..++.++|. +.|++++++..+.+.+++|+++. +++++
T Consensus 329 ~~g~~~~-~p~gg~~l~~~~~~~~~~~-----~~~----~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~---~~~e~ 395 (412)
T d1bw0a_ 329 CIGLAPT-MPRGAMYLMSRIDLEKYRD-----IKT----DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT---RPVEV 395 (412)
T ss_dssp STTEEEC-CCCBTTEEEEEECGGGBSS-----CCS----HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHH
T ss_pred hcCceec-CCCCceEEEEeCChhhcCC-----CCC----HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEc---CCHHH
Confidence 8898876 444444443 443211000 011 224455544 45886666665666779999984 35778
Q ss_pred HHHHHHHHHHHHHHH
Q 038818 468 VIAAWKVVQEKLDGI 482 (486)
Q Consensus 468 id~~i~~l~~~~~~l 482 (486)
+++.++.|++.+++-
T Consensus 396 l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 396 YREAVERIKAFCQRH 410 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998887653
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.81 E-value=2.3e-19 Score=177.51 Aligned_cols=334 Identities=10% Similarity=0.016 Sum_probs=211.5
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...++.+...|..+ ..++.+.+.+|+++.+|++.+ ..++++|+|+++++..++.+..+
T Consensus 47 ~~v~~al~~~~~~~~~~Y~~g--~~~Lr~aia~~~~~~~g~~~~-----~~~I~vt~G~~~al~~~~~~~~~-------- 111 (394)
T d1c7na_ 47 PELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQ-----TDWIINTAGVVPAVFNAVREFTK-------- 111 (394)
T ss_dssp HHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhCCCcCCCCC--CHHHHHHHHHHHHHhcCCCCC-----CcceEeeccchhhhhhhhccccc--------
Confidence 344555555555444456433 458999999999999998643 13799999999999888777644
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCC-CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTK-SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~-~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|++....++.....+...|. ..+.++.+. +..+.+|.+.++.++... .+.+++++.++||||.+
T Consensus 112 ---pgd~vi~~~p~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~P~NPTG~v 180 (394)
T d1c7na_ 112 ---PGDGVIIITPVYYPFFMAIKNQER---KIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRV 180 (394)
T ss_dssp ---TTCEEEECSSCCTHHHHHHHTTTC---EEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBC
T ss_pred ---cccccccccCcccchhhHHhhhhh---cccccccccccccccchhhhhhhhhccc-----cceEEEeccccccccee
Confidence 677788888899999999999998 777777643 235678999888776432 24578889999999999
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCC---CCCCceeeccccccCC-CCcceEEEeeCchHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGI---EGADSFSLNAHKWFFT-TLDCCCLWVKNPNALIK 319 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~---~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~~~ 319 (486)
-+ +++|+++|+++++++++|.+|.......+......... ...-.+..++.|.++. ...+|.+++.++....
T Consensus 181 ~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~- 259 (394)
T d1c7na_ 181 WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRE- 259 (394)
T ss_dssp CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHH-
T ss_pred ccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhh-
Confidence 54 77889999999999999999976543222111111111 1122445578898874 4567888887765432
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEecC
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGG-DNRFEIVAP 398 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~ 398 (486)
.+.....+... ++.......+.........+..++..+...+..+.+.+.++. .+++++. .
T Consensus 260 ~~~~~~~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 321 (394)
T d1c7na_ 260 RFTKSRDATSG-----------------MPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP-L 321 (394)
T ss_dssp HHHHHHHHTTC-----------------CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC-C
T ss_pred hhhhhhhhccc-----------------cccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeec-C
Confidence 22111111100 000000111111122234566677777777777777777764 4566654 4
Q ss_pred CCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeE--CCEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 399 RNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMV--AGIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 399 ~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
|+.+.+.| .+.... . + ...+.+.|.+ .|+++.++..+ .+.+++|+++. +++++|++.++.
T Consensus 322 p~g~~~~~~~~~~~~---------~--~--~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~i~eal~r 385 (394)
T d1c7na_ 322 IEGTYLQWIDFRALK---------M--D--HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA---APSSVIQESLER 385 (394)
T ss_dssp CSBSSEEEEECGGGC---------C--C--HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHH
T ss_pred CCceeEEEEECCCCC---------C--C--HHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe---CCHHHHHHHHHH
Confidence 44444444 443211 0 1 2345666654 47765554443 23678999984 367789999999
Q ss_pred HHHHHHHH
Q 038818 475 VQEKLDGI 482 (486)
Q Consensus 475 l~~~~~~l 482 (486)
|++++++|
T Consensus 386 l~~~l~~L 393 (394)
T d1c7na_ 386 LNKALKDL 393 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998876
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=7e-19 Score=172.37 Aligned_cols=317 Identities=12% Similarity=0.022 Sum_probs=198.7
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...+.. ...|....+..++. +.+++.++++.+ .+++|+|+++++..++.+...
T Consensus 41 ~~i~~al~~~l~~-~~~Y~~~~G~~elr----~aiA~~~~~~~~-------~Iiit~G~~~al~~~~~~l~~-------- 100 (368)
T d1v2da_ 41 PFLLEAVRRALGR-QDQYAPPAGLPALR----EALAEEFAVEPE-------SVVVTSGATEALYVLLQSLVG-------- 100 (368)
T ss_dssp HHHHHHHHHHTTT-SCSCCCTTCCHHHH----HHHHHHHTSCGG-------GEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHhhc-ccCCCCCcCCHHHH----HHHHhhcccCCc-------ceeeccchHHHHHHHhhcccc--------
Confidence 4445555555543 23455544555554 456667788765 799999999999877766543
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC-CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS-SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~-~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
++..|+++..+|......+...|. +++.++++.. +.+.+|++.|++++++.+ .+++++.++|+||.+
T Consensus 101 ---~~d~v~~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~~~~p~NPtG~~ 168 (368)
T d1v2da_ 101 ---PGDEVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPEGFRLDLSALEKALTPRT------RALLLNTPMNPTGLV 168 (368)
T ss_dssp ---TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCHHHHHTTCCTTE------EEEEEESSCTTTCCC
T ss_pred ---ccccccccCCcchhhhhHHHhcCC---ccceeccccccccccCCHHHHHHhhccCc------eEEEEcCCCCccccc
Confidence 566788888899999999999999 8888887532 357899999999887543 467888999999999
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhc
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~ 322 (486)
-+ +++|+++|++||+++++|++|+......+....... ......+..+..|.++ ....+|++...++ .......
T Consensus 169 ~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~-~~~~~~~ 246 (368)
T d1v2da_ 169 FGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATGYRVGWIVGPKE-FMPRLAG 246 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCCEEEECCTT-THHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccc-cccccceeeccccccccccccccccccccc-ccchhhh
Confidence 66 888999999999999999998654332222111111 1122334455555554 4455787766554 2221111
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCe
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNF 401 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 401 (486)
....+.. ++.......+..++... -.+.++...+...++++++.+.|+++ ++++..+...
T Consensus 247 ~~~~~~~------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~ 307 (368)
T d1v2da_ 247 MRQWTSF------------------SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGT 307 (368)
T ss_dssp HHHHHTS------------------SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBS
T ss_pred hhhcccc------------------ccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecCCce
Confidence 1000000 00000011111222211 12356677777788889999999987 8888755444
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
..+.+.+... + ..+.+.+.|+++.++..+ .+.+++|+++. +++++|+++++.|++
T Consensus 308 ~~~~~~l~~~-------------~-----~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~---~~~e~i~~ai~rL~~ 366 (368)
T d1v2da_ 308 YFLMAELPGW-------------D-----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFC---KTEEELHLALERLGR 366 (368)
T ss_dssp SEEEEECTTC-------------C-----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC---SCHHHHHHHHHHHHH
T ss_pred eEEEEeCCcc-------------H-----HHHHHHhCCEEEEechhhCCCCCCCCEEEEEec---CCHHHHHHHHHHHHH
Confidence 4455555321 1 122344678765444333 24678999984 367799999999987
Q ss_pred H
Q 038818 478 K 478 (486)
Q Consensus 478 ~ 478 (486)
+
T Consensus 367 ~ 367 (368)
T d1v2da_ 367 V 367 (368)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.9e-18 Score=172.40 Aligned_cols=337 Identities=11% Similarity=0.051 Sum_probs=210.2
Q ss_pred HHHHHHHHHhhcCCC---ccccccChhhHHHHHHHHHHHHHHcCCCC-CCccCCCcceEEcCCchHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV---GFNWMSSPAATELENIVMDWLGEMLKLPK-SFLFSGTGGGVIQGTTCEAILCTLAAARDQIL 162 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~~-~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 162 (486)
...+.+.+...+... ...|....+..++.+.+.+|+.+.+|.+. + ..++++|+|+++++..++.+..+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-----~~~I~it~G~~~al~~~~~~~~~--- 126 (420)
T d1vp4a_ 55 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-----EDNLIFTVGSQQALDLIGKLFLD--- 126 (420)
T ss_dssp HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-----GGGEEEEEHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCC-----HHHeEeccchhhhHHHHHHhhhc---
Confidence 344555555444322 23566666678899999999999998752 1 13789999999998776665443
Q ss_pred HHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCC---ccEEEEeecC
Q 038818 163 NEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGL---IPLFLCATVG 239 (486)
Q Consensus 163 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~---~p~~vv~~~g 239 (486)
+++.|+++...+......++..|. +++.+|.++ ..+|++.++..+.+...... ...+++++.+
T Consensus 127 --------~Gd~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p 192 (420)
T d1vp4a_ 127 --------DESYCVLDDPAYLGAINAFRQYLA---NFVVVPLED---DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNF 192 (420)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEET---TEECHHHHHHHHHHHHHTTCGGGEEEEEEECSS
T ss_pred --------cccccccccccccchhHHHHHHhh---hcccccccc---cccccchhhhhhhhhHHHhhccccceeeEecCC
Confidence 677888899999999999999999 999999875 36899999998876544432 2345566778
Q ss_pred CccccccC---CchHHHHHHHHhCceEEeeccccchhccCccchhhh-cCCCCCCceeeccccccCCCCcceEEEeeCch
Q 038818 240 TTAITTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFI-DGIEGADSFSLNAHKWFFTTLDCCCLWVKNPN 315 (486)
Q Consensus 240 tt~~G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~-~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~ 315 (486)
+||||.+- .+++|+++|++|++++++|.+|.......+...... ..-...-.+..++.|++.....+|+++.. +.
T Consensus 193 ~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~-~~ 271 (420)
T d1vp4a_ 193 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGS-KE 271 (420)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECC-HH
T ss_pred CCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccccccccccccccc-ch
Confidence 99999884 578999999999999999999976443222111110 01112334556688888766778887764 33
Q ss_pred HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh----chHHHHHHHH----HHHHHHHHHHHHH
Q 038818 316 ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF----GVANLRNFLR----SHVRMAQLFQELV 387 (486)
Q Consensus 316 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~----g~~g~~~~~~----~~~~~a~~l~~~L 387 (486)
...........+.. ....+....+...+ ..+.+++..+ +...+.+.|.+.+
T Consensus 272 ~i~~l~~~~~~~~~---------------------~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 330 (420)
T d1vp4a_ 272 FIRKIVQAKQSADL---------------------CSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF 330 (420)
T ss_dssp HHHHHHHHHHHHHS---------------------SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhhhccc---------------------cCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhh
Confidence 33322111110000 00111111111111 1122333333 3344455555666
Q ss_pred hCCCCeEEecCCCeeEE-EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC----CEeEEEEEecCCC
Q 038818 388 GGDNRFEIVAPRNFAVV-CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA----GIYFIRFAVGATL 462 (486)
Q Consensus 388 ~~~~~~~~~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----~~~~lR~~~~~~~ 462 (486)
.+.|++++. +|+.+++ .+++.... + ...+.+.+.+.|+.+.++..+. +.+++|++++ .
T Consensus 331 ~~~~g~~~~-~p~gg~f~~~~~~~~~----------d----~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~--~ 393 (420)
T d1vp4a_ 331 SDIPGVKWV-KSEGGLFIWLTLPEGF----------D----TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC--L 393 (420)
T ss_dssp TTSTTCEEC-CCSBSSEEEEECCTTC----------C----TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS--S
T ss_pred ccCCCcEEe-cCCceEEEEEECCCCC----------C----HHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC--c
Confidence 667889886 4454544 44543211 0 1123455666788665554332 2568999985 3
Q ss_pred CcHHHHHHHHHHHHHHHHHHhh
Q 038818 463 TEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 463 tt~~did~~i~~l~~~~~~l~~ 484 (486)
.+++++++.++.|++++++.-+
T Consensus 394 ~~~e~l~~a~~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 394 PPDEKIVEGIKRLREVVLEYGK 415 (420)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhH
Confidence 4677899999999999887654
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.79 E-value=3.3e-18 Score=169.57 Aligned_cols=338 Identities=9% Similarity=0.005 Sum_probs=210.5
Q ss_pred HHHHHHHHhhcCCC---ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 88 GFLGEMLSSGFNVV---GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 88 ~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
..+.+.+...+... ...|....+..++.+.+.+|+.+.+|.+.+ ...+++|+|+++++..++.+..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~-----~~~I~it~G~~~al~~~~~~l~~----- 116 (403)
T d1wsta1 47 ETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMS-----KVEIMTVAGSQQALDLIGRVFLN----- 116 (403)
T ss_dssp HHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCT-----TCEEEEESSHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC-----hHHeeecccchHHHHHHHHHHhh-----
Confidence 34444444443222 234666667789999999999999987533 13799999999998877666543
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC-CCccEEEEeecCCccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA-GLIPLFLCATVGTTAI 243 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~-g~~p~~vv~~~gtt~~ 243 (486)
+++.|++...+|..+...+..+|. +++.||.++. ..+...+.........+ ...+.+++.+.++|||
T Consensus 117 ------~gd~v~~~~P~y~~~~~~~~~~g~---~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPt 184 (403)
T d1wsta1 117 ------PGDPIVVEAPTYLAAIQAFKYYDP---EFISIPLDDK---GMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPA 184 (403)
T ss_dssp ------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEETT---EECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTT
T ss_pred ------cCCccccCCCcchhhhHHHhhccc---cceeEeeccc---CCccccccccchhhhhccccccccccccccCCCC
Confidence 567788888999999999999999 9999998853 44555555544444333 2345667788899999
Q ss_pred cccCC---chHHHHHHHHhCceEEeeccccchhccCccchhhhc-CCCCCCceeeccccccCCCCcceEEEeeCchHHHH
Q 038818 244 TTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFID-GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIK 319 (486)
Q Consensus 244 G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~-~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~ 319 (486)
|.+-+ +++|+++|++||+++++|.+|+.............. .-..-..++.+.+|+++....+|+++..++ ....
T Consensus 185 G~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~-~i~~ 263 (403)
T d1wsta1 185 GVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPH-LIRK 263 (403)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHH-HHHH
T ss_pred CccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCcccccccccchH-HHHH
Confidence 98854 678888999999999999999754332221111100 001233566789999976678898887543 2221
Q ss_pred HhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCC--CCeEE
Q 038818 320 ALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGD--NRFEI 395 (486)
Q Consensus 320 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~--~~~~~ 395 (486)
...... +... +. ......+...+... ....+.+..+......+.+.+.|.+. .++..
T Consensus 264 ~~~~~~-~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 324 (403)
T d1wsta1 264 MEIAKQ-SIDL-----------------CT-NTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEW 324 (403)
T ss_dssp HHHHHH-HHHS-----------------SC-CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred HHHHHh-hhcc-----------------cc-ccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Confidence 111000 0000 00 00011111111111 22345666666677777777777653 35665
Q ss_pred ecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHH
Q 038818 396 VAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 396 ~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~ 470 (486)
. .|..+.++| .+.. .. ..+.+.+.+.++|+.++++..+ .+.+++|++++ ..++++|++
T Consensus 325 ~-~p~gg~~~~~~~~~-~~-------------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~--~~~~~~l~~ 387 (403)
T d1wsta1 325 T-KPEGGMFVRVTLPE-GI-------------DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFT--YVPEETIRE 387 (403)
T ss_dssp C-CCSBSSEEEEECCT-TC-------------CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS--SSCHHHHHH
T ss_pred e-CCCceeEEEEECCC-CC-------------CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEec--CCCHHHHHH
Confidence 4 445444444 4432 11 0124566677788765554333 23679999984 357889999
Q ss_pred HHHHHHHHHHHHhh
Q 038818 471 AWKVVQEKLDGILA 484 (486)
Q Consensus 471 ~i~~l~~~~~~l~~ 484 (486)
.++.|++++++-++
T Consensus 388 al~rl~~~l~~~~k 401 (403)
T d1wsta1 388 GVRRLAETIKEEMK 401 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.79 E-value=4.8e-18 Score=170.17 Aligned_cols=324 Identities=12% Similarity=0.080 Sum_probs=189.2
Q ss_pred CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC
Q 038818 100 VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD 179 (486)
Q Consensus 100 ~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~ 179 (486)
.....|..+|...+||+. +++++|.+ .++++++||+||..++.+... ++.+|++..
T Consensus 66 ~GDd~Y~~dpt~~~lE~~----~a~l~G~e---------~al~~~SGt~An~~a~~~l~~-----------~Gd~Vi~~~ 121 (456)
T d1c7ga_ 66 IGDEAYAGSENFYHLEKT----VKELFGFK---------HIVPTHQGRGAENLLSQLAIK-----------PGQYVAGNM 121 (456)
T ss_dssp SCCCCSSSCHHHHHHHHH----HHHHHCCS---------EEEEESSHHHHHHHHHHHHCC-----------TTEEEEESS
T ss_pred ccchhccCCchHHHHHHH----HHHHhCCC---------eEEECCCHHHHHHHHHHHhcC-----------CCCeEecCc
Confidence 334578889998999876 57788886 368999999999888877643 677787664
Q ss_pred CCchHHHHHHHHcCCCCCCeEEEecCC--------CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc----ccC
Q 038818 180 QTHSALQKAAQIAGIDPKNFRAIKTTK--------SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT----TVD 247 (486)
Q Consensus 180 ~~H~s~~~a~~~~G~g~~~v~~v~~d~--------~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G----~id 247 (486)
..+ +........|. ..+.+..+. ..++.+|+++|+++|++..+. .+.+++++..+|..| .++
T Consensus 122 ~f~-~~~~~i~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~--~~~~i~~e~~~n~~gG~~~~~~ 195 (456)
T d1c7ga_ 122 YFT-TTRFHQEKNGA---TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE--NIAYICLAVTVNLAGGQPVSMA 195 (456)
T ss_dssp CCH-HHHHHHHHTTE---EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHH
T ss_pred chH-HHHHHHHHcCc---eeeeccccccccccccCCccccCCHHHHHHHhhhcCCc--cceeEEeeecccccccceecHH
Confidence 432 33333455565 444443321 124689999999999987532 233566666666665 336
Q ss_pred CchHHHHHHHHhCceEEeeccccchhc-cC----ccchh-----hhc-CCCCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSAC-IC----PEFRH-----FID-GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~-~~----~~~~~-----~~~-~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
++++|.++|++||+.+|+|+|+..+.. +. ..+.. ... -...+|++++++||.+++|.| |+++++++..
T Consensus 196 ~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l 274 (456)
T d1c7ga_ 196 NMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEM 274 (456)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHH
T ss_pred HHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHH
Confidence 789999999999999999999854321 11 11110 000 013689999999999998754 7777787765
Q ss_pred HHHHhcCCcccccCccCCCCCccCCCCccccCCCCC-CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 038818 317 LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF-RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI 395 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 395 (486)
..+.......+-... ...+... ...++...+.... . .+.+++..+++++|.+.|.+. ++.+
T Consensus 275 ~~~~r~~~~~~~g~~--------------~~g~~~~~~~~a~a~~l~e~~--~-~~~l~~r~~~~~~L~e~L~~~-g~~v 336 (456)
T d1c7ga_ 275 FSAAKELVVVYEGMP--------------SYGGLAGRDMEAMAIGLREAM--Q-YEYIEHRVKQVRYLGDKLREA-GVPI 336 (456)
T ss_dssp HHHHHHHHHHHTCCT--------------TTTTCCHHHHHHHHHHHHHHT--C-HHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred HHHHHHhccccCCCc--------------ccchhhHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHhc-cCCc
Confidence 543321110000000 0001000 1122222232211 1 234566677889999999887 6776
Q ss_pred ecCCCeeEEEEEe---ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee--E-----------CCEeEEEEEec
Q 038818 396 VAPRNFAVVCFRV---LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM--V-----------AGIYFIRFAVG 459 (486)
Q Consensus 396 ~~~~~~~~v~f~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~-----------~~~~~lR~~~~ 459 (486)
+.++..+.+.... .+... ... ......+.+.+.+.|+-...... . .....+|+++.
T Consensus 337 v~p~g~~~v~vda~~~~~~i~-------~~~-~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip 408 (456)
T d1c7ga_ 337 VEPTGGHAVFLDARRFCPHLT-------QDQ-FPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIP 408 (456)
T ss_dssp CSSCCSSEEEEEHHHHCTTSC-------GGG-CHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECC
T ss_pred ccCCCCcceeEechhhccCCC-------ccc-ccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecC
Confidence 6555444333221 11100 011 11112233334456653222111 0 01236999984
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~ 480 (486)
....|++|||+++++|+++.+
T Consensus 409 ~~~~T~e~iD~Vae~i~~v~~ 429 (456)
T d1c7ga_ 409 RRVYTYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp TTSCCHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHh
Confidence 334488899999999999875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.79 E-value=2.9e-19 Score=174.63 Aligned_cols=338 Identities=11% Similarity=-0.012 Sum_probs=200.2
Q ss_pred CcceecCCCCCHHHHHHHHHHhhc-CC---Ccccc--c-cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCch
Q 038818 75 YYFAYFPSSGSIAGFLGEMLSSGF-NV---VGFNW--M-SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTC 147 (486)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-n~---~~~~~--~-~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt 147 (486)
|-++|-|+|...|..+.+.+...+ |. +.... . .++.+.++.+++++.|++++|.++++ ..++++|++
T Consensus 3 ~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~------~i~~~~gs~ 76 (361)
T d2c0ra1 3 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGY------KVLFIQGGA 76 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSE------EEEEESSHH
T ss_pred CCcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCC------EEEEECCCc
Confidence 445677887776666666655443 32 11111 1 36788899999999999999998764 678888877
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH
Q 038818 148 EAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 148 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~ 225 (486)
++++.++...... ++.++++-...+++ +.+.++..|. .+..++.+.. ...+++.+++.+....
T Consensus 77 t~~~ea~~~~l~~----------~~~~~l~~~~g~~~~~~~~~~~~~g~---~~~~~~~~~~--~~~~~~~~~~~~~~~~ 141 (361)
T d2c0ra1 77 STQFAMIPMNFLK----------EGQTANYVMTGSWASKALKEAKLIGD---THVAASSEAS--NYMTLPKLQEIQLQDN 141 (361)
T ss_dssp HHHHHHHHHHHCC----------TTCEEEEEECSHHHHHHHHHHHHHSC---EEEEEECGGG--TTCSCCCGGGCCCCTT
T ss_pred hHHHHHHHhcccc----------CCCceEEEeechhhhhhhhhhhhcCc---eeeeeccccc--cccchhhhhhhcccCc
Confidence 7766554332211 33334333334433 6677888898 8888887753 3677777776654332
Q ss_pred HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
+ ++.++.+|.+.|+.+|.++|+++|+.++||++++.+....+. +..|...+++||+++.|.+
T Consensus 142 -------~---~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~--------~~~di~~~s~~k~~~~~~~ 203 (361)
T d2c0ra1 142 -------A---AYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDL--------NQFGLVYAGAQKNLGPSGV 203 (361)
T ss_dssp -------E---EEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCG--------GGCSEEEEETTTTTCCSSC
T ss_pred -------c---eEEEEecccceecceEEEeeccCCceEEEEeecccccccccc--------ccceeEEEecccccccccC
Confidence 2 233467899999999999999999999999999887765543 2456667778999887665
Q ss_pred ceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCC--CCc---hHHHHHHH-HhchHHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRR--FRA---LKLWLVLR-SFGVANLRNFLRSHVRM 379 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~--~~~---l~~~~~l~-~~g~~g~~~~~~~~~~~ 379 (486)
.++++..+. ... .-.....+.. +..+....... ... ..+..... .....+......+....
T Consensus 204 ~~~~~~~~~-~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (361)
T d2c0ra1 204 TVVIVREDL-VAE-SPKHLPTMLR-----------YDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKK 270 (361)
T ss_dssp EEEEEEGGG-SSS-CCTTSCGGGC-----------HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cEEEEEhHH-hhh-Cccccccccc-----------cccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHH
Confidence 555544332 111 0000111100 00000000000 011 11111111 12234445555666666
Q ss_pred HHHHHHHHhCCCCe-EEecCC---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEE
Q 038818 380 AQLFQELVGGDNRF-EIVAPR---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIR 455 (486)
Q Consensus 380 a~~l~~~L~~~~~~-~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR 455 (486)
+..+.+........ .....+ ...+++|++.+ +...+.+.+.|.+.|++..++. ...+.+|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~--------------~~~~~~~~~~L~~~GI~~~~G~--~~~g~~R 334 (361)
T d2c0ra1 271 ASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS--------------EELEKEFVKASEQEGFVGLKGH--RSVGGLR 334 (361)
T ss_dssp HHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC--------------HHHHHHHHHHHHHTTEESCBCC--TTTCSEE
T ss_pred HHHhhhhhhhcccccccCCChhhccceEEEEECCC--------------cccHHHHHHHHHHCCCEEecCC--CcCCeEE
Confidence 66666666554333 332222 22467887753 2334577777878887433331 2222499
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 456 FAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 456 ~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+++++ .++.|||++|+++|++..++
T Consensus 335 Is~~~-~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 335 ASIYN-AVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp EECCT-TSCHHHHHHHHHHHHHHHHH
T ss_pred EEecC-CCCHHHHHHHHHHHHHHHHh
Confidence 99974 67888999999999998764
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.79 E-value=2.2e-17 Score=162.30 Aligned_cols=330 Identities=12% Similarity=0.070 Sum_probs=212.6
Q ss_pred HHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC
Q 038818 93 MLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR 172 (486)
Q Consensus 93 ~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~ 172 (486)
.+...++.+...+..+|...++|++ +++++|.+ .++++++||.|+..|+.+.--+ ++
T Consensus 18 ~~~~~l~~g~~~~~~g~~v~~fE~~----~a~~~g~~---------~~v~~~SGt~Al~lal~~l~~~----------~g 74 (384)
T d1b9ha_ 18 GLVRALEQGQWWRMGGDEVNSFERE----FAAHHGAA---------HALAVTNGTHALELALQVMGVG----------PG 74 (384)
T ss_dssp HHHHHHHTSCCBTTTCSHHHHHHHH----HHHHTTCS---------EEEEESCHHHHHHHHHHHTTCC----------TT
T ss_pred HHHHHHHcCCeeecCCHHHHHHHHH----HHHHHCcC---------eEEEeCCHHHHHHHHHHHcCCC----------CC
Confidence 4444555543334567888888865 67788876 4689999999998888764211 67
Q ss_pred eEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHH
Q 038818 173 LVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPL 252 (486)
Q Consensus 173 ~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I 252 (486)
+.|+++..++.+...++...|. +++.+++++ .++.+|++.+++.+.+.++ .| .+++..|...++++|
T Consensus 75 deVi~p~~t~~a~~~ai~~~g~---~p~~~d~~~-~~~~~d~~~~~~~i~~~tk------~i---~~~~~~g~~~d~~~i 141 (384)
T d1b9ha_ 75 TEVIVPAFTFISSSQAAQRLGA---VTVPVDVDA-ATYNLDPEAVAAAVTPRTK------VI---MPVHMAGLMADMDAL 141 (384)
T ss_dssp CEEEEESSSCTHHHHHHHHTTC---EEEEECBCT-TTCCBCHHHHHHHCCTTEE------EE---CCBCGGGCCCCHHHH
T ss_pred CEEEEecccccccccccccccc---ccccccccc-cccccchhhhccccccccc------cc---ccccccccccccccc
Confidence 7899999999999999999999 999999886 4689999999998876543 33 345678899999999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
.++|+++|++++.|+|++-+.......-. ....+..+++++.|.+.+. ..|++++++++.........-.......
T Consensus 142 ~~~~~~~~i~lieD~a~a~ga~~~g~~~g---~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~ 217 (384)
T d1b9ha_ 142 AKISADTGVPLLQDAAHAHGARWQGKRVG---ELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPR 217 (384)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEEGG---GSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCT
T ss_pred hhhhhhhhhhhhhhhceecccccCCEecC---cccccceeccccccccccc-ccchhhhhhHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999765543222111 1234557788889998764 4677788777654332111000010000
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC------eeEEEE
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN------FAVVCF 406 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~------~~~v~f 406 (486)
....+....+...-+...+.+...+.. .+.+.+.+++..++++++.+.|++++++.....+. .....|
T Consensus 218 ----~~~~~~~~~~G~n~rms~l~Aaig~~q--L~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~ 291 (384)
T d1b9ha_ 218 ----DDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMF 291 (384)
T ss_dssp ----TCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEE
T ss_pred ----ccccccccccccccccccchhhhhhhh--hhhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccc
Confidence 000010001111222334444444433 36778889999999999999999998876543221 223455
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEee-eeEC----------------------------CEeEEEEE
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSH-GMVA----------------------------GIYFIRFA 457 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~----------------------------~~~~lR~~ 457 (486)
.+.... .....++.+.|.++|+-.... ..+. ....+.+=
T Consensus 292 ~~~~~~------------~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP 359 (384)
T d1b9ha_ 292 RIPGLT------------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLH 359 (384)
T ss_dssp ECTTCC------------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEE
T ss_pred eecccc------------cccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEcc
Confidence 543221 222346788888889732111 1100 01245554
Q ss_pred ecCCCCc-HHHHHHHHHHHHHHHHH
Q 038818 458 VGATLTE-DRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 458 ~~~~~tt-~~did~~i~~l~~~~~~ 481 (486)
+ ++..| ++||+++++.|++++++
T Consensus 360 ~-~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 360 H-RVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp G-GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHhh
Confidence 4 56655 67999999999998764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.78 E-value=1.3e-17 Score=162.37 Aligned_cols=288 Identities=13% Similarity=0.071 Sum_probs=182.8
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++++++.+|.+++ .+++++|+++++...+... .. ++.+|.. ..+..........+.
T Consensus 61 ~Lr~aia~~~~v~~~-------~I~~~~g~~~~~~~~~~~~-~~----------~~~~v~~--p~~~~~~~~~~~~~~-- 118 (355)
T d1lc5a_ 61 HLHQALARHHQVPAS-------WILAGNGETESIFTVASGL-KP----------RRAMIVT--PGFAEYGRALAQSGC-- 118 (355)
T ss_dssp HHHHHHHHHHTSCGG-------GEEEESSHHHHHHHHHHHH-CC----------SEEEEEE--SCCTHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCCCHH-------HEEecccHHHHHHHHHhhh-cc----------ccccccC--Cccceeccccccccc--
Confidence 355677888898876 6788887776655433321 10 3333433 455555666777888
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchh
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSA 273 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~ 273 (486)
.++.+|++.++++.++ +++++.+.++ +.+|+++.++|+||.+-+ +.+|+++|++|++++++|.+|..+.
T Consensus 119 -~~~~v~~~~~~~~~~~-~~~~~~~~~~------~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~ 190 (355)
T d1lc5a_ 119 -EIRRWSLREADGWQLT-DAILEALTPD------LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI 190 (355)
T ss_dssp -EEEEEECCGGGTTCCC-TTHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGS
T ss_pred -cceeeeeeccCCccce-eeeeeccccc------cceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeee
Confidence 8999998764445555 4444444332 347888899999999866 7788889999999999999997643
Q ss_pred ccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC
Q 038818 274 CICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF 352 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~ 352 (486)
........... ...-..+..++.|+++.| .-+|+++..++......-....++ ..
T Consensus 191 ~~~~~~~~~~~-~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~-----------------------~~ 246 (355)
T d1lc5a_ 191 PHETGFIPALK-DNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPW-----------------------SV 246 (355)
T ss_dssp TTCCCSGGGCT-TCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTT-----------------------CS
T ss_pred eeccccccccc-ccccceeecccccccccccccccceeccchhhhHHHHhhcCCc-----------------------cc
Confidence 22211111111 112236677899998844 568888877654322111111100 11
Q ss_pred CchHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHH
Q 038818 353 RALKLWLVLRSF-GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKL 431 (486)
Q Consensus 353 ~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l 431 (486)
..+...++...+ ..+.+.+..++..+..+++.+.|.+++++++. +...+.+.+.+... ..++
T Consensus 247 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~~----------------~~~~ 309 (355)
T d1lc5a_ 247 NALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCERE----------------DIDL 309 (355)
T ss_dssp CHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCT----------------TCCH
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCCC----------------HHHH
Confidence 234444444443 34567778888888999999999999898864 55555566555432 1245
Q ss_pred HHHHHhcCcEEEeeeeEC--CEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 432 LESINASGQLYVSHGMVA--GIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 432 ~~~l~~~g~~~~~~~~~~--~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
.++|.++|+++..+..+. +.+++|+++. +++|+++++++|++++
T Consensus 310 ~~~L~~~gv~vr~~~~f~~~~~~~iRis~~----~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 310 QRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVL 355 (355)
T ss_dssp HHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCcEEEeCccCCCCCCCEEEEEeC----CHHHHHHHHHHHHHhC
Confidence 667778887655544443 3578999973 5779999999999863
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.5e-17 Score=167.95 Aligned_cols=338 Identities=12% Similarity=0.056 Sum_probs=194.1
Q ss_pred CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC
Q 038818 100 VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD 179 (486)
Q Consensus 100 ~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~ 179 (486)
.....|..+|...+||+ .+++++|.+ .++++++||+||..|+.+++.+........ ....+..+.
T Consensus 65 ~gd~~Y~~~~~~~~le~----~~a~l~G~~---------~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~--~~~~i~~~~ 129 (467)
T d2v1pa1 65 RGDEAFSGSRSYYALAE----SVKNIFGYQ---------YTIPTHQGRGAEQIYIPVLIKKREQEKGLD--RSKMVAFSN 129 (467)
T ss_dssp SCCCCSSSCHHHHHHHH----HHHHHTCCS---------EEEEECSSTTTHHHHHHHHHHHHHHHHCCC--TTTCEEEES
T ss_pred ccchhhcCCchHHHHHH----HHHHHHCCC---------EEEECCCCHHHHHHHHHHHhhccceEecCC--CCcEEEEec
Confidence 33456777888888875 468899986 368999999999999998877543221111 222344566
Q ss_pred CCchHHHHHHHHcCCCCCCeEEEecCCC--------CCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc-c---cC
Q 038818 180 QTHSALQKAAQIAGIDPKNFRAIKTTKS--------SSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT-T---VD 247 (486)
Q Consensus 180 ~~H~s~~~a~~~~G~g~~~v~~v~~d~~--------~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G-~---id 247 (486)
..|+....++...|. .++.++.+.. ..+.+|+++|++++++..... ..++++...++..| . ++
T Consensus 130 ~~~~~~~~~~~~~G~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~--~~~i~~e~~~~~~gg~~~~~~ 204 (467)
T d2v1pa1 130 YFFDTTQGHSQINGC---TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN--VPYIVATITSNSAGGQPVSLA 204 (467)
T ss_dssp SCCHHHHHHHHHTTC---EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG--CCCEEEESSBCGGGCBCCCHH
T ss_pred ccccccHHHHHHcCC---eeeecccccccccccccccccCCCHHHHHHHHhhcCccc--cceeeecceeeccccccCCHH
Confidence 667777888888898 8888876531 146899999999998764321 22344444444333 3 35
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccC-----ccch-----hhhc-CCCCCCceeeccccccCCCCcceEEEeeCchH
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACIC-----PEFR-----HFID-GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNA 316 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~-----~~~~-----~~~~-~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~ 316 (486)
++++|++||++||++||+|+|+..+.... ..+. .... -...+|+++++.||.+++|. .|++..+++..
T Consensus 205 ~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~-gg~i~~~~~~~ 283 (467)
T d2v1pa1 205 NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM-GGLLCMKDDSF 283 (467)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS-CEEEEECSGGG
T ss_pred HHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC-ceeEEecchhh
Confidence 78999999999999999999985432211 0110 0000 12369999999999999874 46666666543
Q ss_pred HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 317 LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 317 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
............... + ....++ .....+.+....+......+..++..+++++|.++|.+. ++.+.
T Consensus 284 ~~~~~~~~~~~~~~~-----~------~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~ 349 (467)
T d2v1pa1 284 FDVYTECRTLCVVQE-----G------FPTYGG--LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ 349 (467)
T ss_dssp HHHHHHHHHHHHHTT-----S------SCCCCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred hhHHHhhcccccccc-----c------Ccchhh--hHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 221110000000000 0 000000 111222222222222223466777788999999999886 44443
Q ss_pred cCCCeeEEEEEee---cCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-------------eECCEeEEEEEecC
Q 038818 397 APRNFAVVCFRVL---PSASGLGDGKANEGANELNRKLLESINASGQLYVSHG-------------MVAGIYFIRFAVGA 460 (486)
Q Consensus 397 ~~~~~~~v~f~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------------~~~~~~~lR~~~~~ 460 (486)
.. ..+.+..... +... ... ........+.+.+.|+..+... .......+|+++..
T Consensus 350 ~~-~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~ 420 (467)
T d2v1pa1 350 QA-GGHAAFVDAGKLLPHIP-------ADQ-FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPR 420 (467)
T ss_dssp EE-CSSCEEEEHHHHSTTSC-------GGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCT
T ss_pred CC-CccceeecchhhcCCcc-------hhh-hhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCC
Confidence 22 2222222211 1100 111 1111223333445665332211 01234579998744
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~ 481 (486)
...|++|||+++++|+++.++
T Consensus 421 ~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 421 ATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 455888999999999999864
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.78 E-value=5.8e-18 Score=161.73 Aligned_cols=339 Identities=11% Similarity=0.078 Sum_probs=218.8
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-CCCcc------ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-NVVGF------NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-n~~~~------~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
.+..+++.......+.+++.+.+ |.+.- .|.......++|.-+++...++||+... -+=..+|+.
T Consensus 25 ~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~a--------nVqp~SGs~ 96 (405)
T d1kl1a_ 25 KIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--------NVQPHSGAQ 96 (405)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEE--------ECCCSSHHH
T ss_pred CceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcc--------eeeccCchH
Confidence 35555554444444555555544 44432 2334556789999999999999998642 344667899
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecC---CCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSD---QTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDI 225 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~---~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~ 225 (486)
||+..+.+..+ |++.|+.-. -.|.+........|... +++..|+|+ +++.+|.+++++..++.+
T Consensus 97 An~av~~all~-----------pGD~im~l~l~~GGHlshg~~~~~~g~~~-~~~~y~~d~-~~~~ID~d~l~~~a~~~k 163 (405)
T d1kl1a_ 97 ANMAVYFTVLE-----------HGDTVLGMNLSHGGHLTHGSPVNFSGVQY-NFVAYGVDP-ETHVIDYDDVREKARLHR 163 (405)
T ss_dssp HHHHHHHHHCC-----------TTCEEEEECGGGTCCGGGTCTTSHHHHHS-EEEEECBCT-TTCSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC-----------CCCEEEEeecccccccccCccccccceEE-EEEEeccch-hcccccHHHHHHHHHhhC
Confidence 99776666543 666666443 46666433322222211 677788886 367999999999988753
Q ss_pred HCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc
Q 038818 226 QAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD 305 (486)
Q Consensus 226 ~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~ 305 (486)
|.+|++ |.+..-..-|++++++||++.|++|++|+||-.+++....+..- ++.+|.++.+.||.|.+|.
T Consensus 164 -----PklIi~--G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P---~~~aDvvt~tThKtlrGPr- 232 (405)
T d1kl1a_ 164 -----PKLIVA--AASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---VPYAHFVTTTTHKTLRGPR- 232 (405)
T ss_dssp -----CSEEEE--CCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---TTTCSEEEEESSSTTCCCS-
T ss_pred -----cceEEe--cccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCCh---hhhhhheeccccccccCCC-
Confidence 665544 33344456689999999999999999999997776655444333 3589999999999999996
Q ss_pred ceEEEeeCchHHHHHh-cCCcccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 038818 306 CCCLWVKNPNALIKAL-STNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 306 ~g~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l 383 (486)
+|+++++++ ...+.- ...|. ++++-... ..+...+++....+.+++..++..++|+.|
T Consensus 233 gg~I~~~~~-~~~~i~~avfPg-------------------~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaL 292 (405)
T d1kl1a_ 233 GGMILCQEQ-FAKQIDKAIFPG-------------------IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRL 292 (405)
T ss_dssp CEEEEECHH-HHHHHHHHHTTT-------------------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CceEEecch-hHHHHHhhhCcc-------------------cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 467777644 222211 11121 12221222 234444555544567789999999999999
Q ss_pred HHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC------CEeEEEE
Q 038818 384 QELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA------GIYFIRF 456 (486)
Q Consensus 384 ~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~------~~~~lR~ 456 (486)
.+.|.+. |+.++.. .+.+++...+.+... .. ++..+.|.+.|+.+-.-+... ....||+
T Consensus 293 a~~L~~~-G~~vv~ggTd~H~vlvdl~~~~~----------~g---~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRi 358 (405)
T d1kl1a_ 293 ASALQNE-GFTLVSGGTDNHLLLVDLRPQQL----------TG---KTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRI 358 (405)
T ss_dssp HHHHHHT-TCEEGGGSCSSSEEEEECGGGTC----------CH---HHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEE
T ss_pred HHHHhcC-CceeecCCCccceeeccccccCC----------cH---HHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceee
Confidence 9999987 8999854 566788887765321 02 222334455576432211111 1357999
Q ss_pred Ee---cCCCCcHHHHHHHHHHHHHHHH
Q 038818 457 AV---GATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 457 ~~---~~~~tt~~did~~i~~l~~~~~ 480 (486)
.. +.....++|+.++.+.|.++++
T Consensus 359 GT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 359 GTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp ECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 87 3345577899999999988773
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=5.7e-18 Score=166.23 Aligned_cols=324 Identities=13% Similarity=0.051 Sum_probs=211.5
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...++.....|....+..++.+.+.+++.+..|.+.+. ...++|+|+++++..++.+..+
T Consensus 44 ~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~-----~~i~~t~G~~~al~~~~~~l~~-------- 110 (375)
T d1o4sa_ 44 EPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP-----DQVVVTNGAKQALFNAFMALLD-------- 110 (375)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG-----GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhcccccccc-----ccccccCcHHHHHHHHHHHHhC--------
Confidence 445566666665555567666677899999999999998876542 3789999999988777666543
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
++..|++...+++.....+...|. .++.++.++.+.+.+|.+.++....+. +.+++++.++||||.+-
T Consensus 111 ---~gd~vlv~~P~y~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~NPTG~~~ 178 (375)
T d1o4sa_ 111 ---PGDEVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVY 178 (375)
T ss_dssp ---TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEccCccccchhhhhcccc---ccccccccccccccchhHHHHHhhccC------ccEEEEeCCCCCccCCC
Confidence 566777888888888888899998 888888887667888999888765443 44788999999999984
Q ss_pred ---CchHHHHHHHHhCceEEeeccccchhccCccchh-hhcCCCCCCceeeccccccCC-CCcceEEEeeCchHHHHHhc
Q 038818 248 ---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRH-FIDGIEGADSFSLNAHKWFFT-TLDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 248 ---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~-~~~~~~~aDsi~~~~hK~l~~-p~~~g~~~~~~~~~~~~~~~ 322 (486)
.+++|+++|++|++|++.|++|+......+.... ...+...--.+..++.|.++. ..-+|+++..+... .....
T Consensus 179 s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~-~~~~~ 257 (375)
T d1o4sa_ 179 RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVA-TAVSK 257 (375)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHH-HHHHH
T ss_pred CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccch-hhhhh
Confidence 4778888999999999999988654332211111 011111122556778998874 46788887665432 21111
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA 402 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 402 (486)
....... .............+ .+......+...+..+.+.+.|++. ++++. +|+.+
T Consensus 258 ~~~~~~~---------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~~-~p~gg 313 (375)
T d1o4sa_ 258 IQSHTTS---------------------CINTVAQYAALKAL-EVDNSYMVQTFKERKNFVVERLKKM-GVKFV-EPEGA 313 (375)
T ss_dssp HHHHHTC---------------------SCCHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCC-CCSBS
T ss_pred hhccccc---------------------cccccchhhhhhhc-ccchhhhHHHHHHHHHHHHHHHHhc-CceEe-cCCcc
Confidence 1100000 01112222222222 2333445566667778888888876 78775 45544
Q ss_pred EE-EEEeecCCCCCCCCCCccchHHHHHHHHHH-HHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 403 VV-CFRVLPSASGLGDGKANEGANELNRKLLES-INASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 403 ~v-~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+ .+.+... ..++..+ +.+.|+++.++..+...+++|+++. +++++|++.++.|+++++
T Consensus 314 ~f~~~~~~~~----------------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~---~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 314 FYLFFKVRGD----------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA---TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp SEEEEECSSC----------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCC----------------HHHHHHHHHHhCCEEEEEccccCCCCeEEEEEc---CCHHHHHHHHHHHHHHhc
Confidence 44 4444321 1233334 3456886666655555779999984 367789999999888764
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.3e-19 Score=176.71 Aligned_cols=341 Identities=9% Similarity=-0.072 Sum_probs=203.1
Q ss_pred ceecCCCCCHHHHHHHHHHhhc-CCC---ccccc---cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 77 FAYFPSSGSIAGFLGEMLSSGF-NVV---GFNWM---SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~-n~~---~~~~~---~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
++|-|+|...|..+.+.+...+ |.+ ...++ .++.+.++-+++++.+++++|.++.. ..++++|++++
T Consensus 3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~------~v~~~~gs~t~ 76 (360)
T d1bjna_ 3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNY------KVLFCHGGGRG 76 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHHHH
T ss_pred EEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCC------EEEEECCchHH
Confidence 5778888777666666665544 322 11111 36778888889999999999998653 57888888777
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHC
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQA 227 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~ 227 (486)
++.++...... ++.++++....++. +...++..|. .++.+..+. ....+.+.+++.+...+
T Consensus 77 ~~~a~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~-- 139 (360)
T d1bjna_ 77 QFAAVPLNILG----------DKTTADYVDAGYWAASAIKEAKKYCT---PNVFDAKVT--VDGLRAVKPMREWQLSD-- 139 (360)
T ss_dssp HHHHHHHHHCT----------TCCEEEEEESSHHHHHHHHHHTTTSE---EEEEECEEE--ETTEEEECCGGGCCCCS--
T ss_pred HHhhhhhcccc----------cccccceecccchhhhhHHHHhhcCc---cceeecccc--CCCcchhhhhhhhccCC--
Confidence 76554333211 45555555333332 3334444454 555555443 22455555555443332
Q ss_pred CCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcce
Q 038818 228 GLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCC 307 (486)
Q Consensus 228 g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g 307 (486)
.++++++.+|.||...|+.++. ++.+++.+++|++.+.+....+. ..+|...+++||+++.|.+.+
T Consensus 140 ----~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~--------~~~dv~~~ss~k~~~~~~~~~ 205 (360)
T d1bjna_ 140 ----NAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDV--------SRYGVIYAGAQKNIGPAGLTI 205 (360)
T ss_dssp ----SCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCG--------GGCSEEEEETTTTTSSTTCEE
T ss_pred ----ceeEEEecccccccCcccccee--cccccceeeeeeeccccceeeee--------ccceeEEEEcccccccCCCce
Confidence 3567777889999998888774 57788999999998776554442 268999999999999998888
Q ss_pred EEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC---chHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 038818 308 CLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR---ALKLWLVLRSFGVANLRNFLRSHVRMAQLFQ 384 (486)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~---~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~ 384 (486)
++++.+..... ......+..... ...+......... .......+......+.....++..+.+.++.
T Consensus 206 ~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (360)
T d1bjna_ 206 VIVREDLLGKA--NIACPSILDYSI--------LNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLY 275 (360)
T ss_dssp EEEEGGGCSCC--CTTSCGGGCHHH--------HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred eEeeehhhhhc--cccCCcchhhHH--------HHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 88876543211 000001100000 0000000000111 1111222222334566667777777777777
Q ss_pred HHHhCCCCeEEecCC---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCC
Q 038818 385 ELVGGDNRFEIVAPR---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGAT 461 (486)
Q Consensus 385 ~~L~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~ 461 (486)
+.+...........+ ...+++|.+.+. ...+.+.+.+.++|+...++. ...+.+|++++ .
T Consensus 276 ~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~--------------~~~~~~~~~l~~~Gi~~~~G~--~~~g~~Ris~~-~ 338 (360)
T d1bjna_ 276 GVIDNSDFYRNDVAKRNRSRMNVPFQLADS--------------ALDKLFLEESFAAGLHALKGH--RVVGGMRASIY-N 338 (360)
T ss_dssp HHHHHCSSEECCBCGGGBCSSEEEEEESSG--------------GGHHHHHHHHHHTTEECCBCC--TTTCSEEEECC-T
T ss_pred HhhhccccccccCCcccccceEEEEEcCCc--------------ccHHHHHHHHHHCCCEeecCC--CccCeEEEEec-C
Confidence 777776444333222 235788988532 223456677777887543331 11134899985 5
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 038818 462 LTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 462 ~tt~~did~~i~~l~~~~~~ 481 (486)
.+|+|||++|+++|+++.++
T Consensus 339 ~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 339 AMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 77888999999999997653
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.1e-17 Score=160.73 Aligned_cols=338 Identities=11% Similarity=0.049 Sum_probs=218.3
Q ss_pred ceecCCCCCHHHHHHHHHHhhc-CCCcc------ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH
Q 038818 77 FAYFPSSGSIAGFLGEMLSSGF-NVVGF------NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA 149 (486)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~-n~~~~------~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a 149 (486)
+...++..-....+.+++.+.+ |.+.- .|.......++|.-+.+...++||+... -+-..+|+.|
T Consensus 29 i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a--------nVqp~SGs~A 100 (416)
T d1dfoa_ 29 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA--------NVQPHSGSQA 100 (416)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHH
T ss_pred ceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc--------eeecccCccH
Confidence 4455554433344455554444 44332 2334445789999999999999998643 3446788999
Q ss_pred HHHHHHHHHHHHHHHccccCCCCeEEEecCC---CchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHH
Q 038818 150 ILCTLAAARDQILNEIGRENISRLVVYGSDQ---THSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ 226 (486)
Q Consensus 150 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~---~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~ 226 (486)
|+.++.+... |++.|+.-.. .|.+....+...|... +.+..++|+ ++.+|.+++++..++.+
T Consensus 101 N~av~~All~-----------pGD~Il~l~l~~GGHlshg~~~~~~g~~~-~~~~y~~d~--~~~IDyd~l~~~a~~~k- 165 (416)
T d1dfoa_ 101 NFAVYTALLE-----------PGDTVLGMNLAHGGHLTHGSPVNFSGKLY-NIVPYGIDA--TGHIDYADLEKQAKEHK- 165 (416)
T ss_dssp HHHHHHHHCC-----------TTCEEEEECTTTTCCGGGTCTTSHHHHHS-EEEEECBCS--SSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHhcC-----------CCCeeeeccccccccccccccccccCceE-EEEecccCC--ccCccHHHHHHHHHHhc-
Confidence 9877776543 6666664433 5555443333333211 556667775 56899999999888753
Q ss_pred CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc
Q 038818 227 AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 227 ~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~ 306 (486)
|.+|++- .+.....-|++++++||++.|+++++|.||-.+++....+..- ++.+|.++.++||.|.+|. +
T Consensus 166 ----PklIi~G--~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP---~~~aDvvt~tThKtlrGPr-g 235 (416)
T d1dfoa_ 166 ----PKMIIGG--FSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNP---VPHAHVVTTTTHKTLAGPR-G 235 (416)
T ss_dssp ----CSEEEEE--CSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCC---TTTSSEEEEESSSTTCCCS-C
T ss_pred ----cceEEec--ccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCc---ccccceeeeehhhcccCCC-c
Confidence 6666543 4556677899999999999999999999997766544333332 3478999999999999996 5
Q ss_pred eEEEeeCc--hHHHHHh-cCCcccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 038818 307 CCLWVKNP--NALIKAL-STNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLRSFGVANLRNFLRSHVRMAQL 382 (486)
Q Consensus 307 g~~~~~~~--~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~ 382 (486)
|++++++. ....+.- ...|. ++++-... ..+...+++..-...+++..++..++|+.
T Consensus 236 giI~~~~~~~~~~~~i~~avfPg-------------------~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~ 296 (416)
T d1dfoa_ 236 GLILAKGGSEELYKKLNSAVFPG-------------------GQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKA 296 (416)
T ss_dssp EEEEESSCCHHHHHHHHHHHTTT-------------------TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred eEEEeccchHhHHHHHHhhhCcc-------------------cccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 77777643 2221110 11121 12222222 23445566655566788999999999999
Q ss_pred HHHHHhCCCCeEEec-CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE------CCEeEEE
Q 038818 383 FQELVGGDNRFEIVA-PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV------AGIYFIR 455 (486)
Q Consensus 383 l~~~L~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------~~~~~lR 455 (486)
|.+.|.+. |++++. ..+.+++.+.+.+... ..++..+.|.+.|+.+-.-+.. .....||
T Consensus 297 La~~L~~~-G~~iv~ggTdnHlvlvdl~~~~~-------------~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiR 362 (416)
T d1dfoa_ 297 MVEVFLER-GYKVVSGGTDNHLFLVDLVDKNL-------------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIR 362 (416)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC-------------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEE
T ss_pred HHHHHHhC-CcccccCCCCCceeEEEecccCC-------------CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceE
Confidence 99999997 999985 3566788887765321 1233444455567643222211 1245799
Q ss_pred EEe---cCCCCcHHHHHHHHHHHHHHHH
Q 038818 456 FAV---GATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 456 ~~~---~~~~tt~~did~~i~~l~~~~~ 480 (486)
+.. +.....++|++++.+.|.++++
T Consensus 363 iGT~a~TtrG~~e~d~~~iA~~I~~~l~ 390 (416)
T d1dfoa_ 363 VGTPAITRRGFKEAEAKELAGWMCDVLD 390 (416)
T ss_dssp EECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 987 3344567899999998888764
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.7e-17 Score=163.67 Aligned_cols=332 Identities=14% Similarity=0.072 Sum_probs=211.0
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
|..+.+.+.+.. .....|....+..++.+.+.+|+.+..|.+.+. ...++|+|+++++..++.+..+
T Consensus 43 p~~~~~al~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-----~~I~it~G~~~~l~~~~~~l~~------- 109 (389)
T d2gb3a1 43 PEVFFERIYENK-PEVVYYSHSAGIWELREAFASYYKRRQRVDVKP-----ENVLVTNGGSEAILFSFAVIAN------- 109 (389)
T ss_dssp CTHHHHHHHHTC-CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG-----GGEEEESHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHhcC-CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCccc-----ceEEeccccccccccccccccc-------
Confidence 445566666543 345567766677899999999999998875331 3789999999988776665543
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
++..|++....++.....+...|. .++.++.+.+ .+..+.+.+.+.+.+ .+.+++++.++||||.+
T Consensus 110 ----~gd~V~i~~P~y~~~~~~~~~~g~---~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~l~nP~NPtG~~ 175 (389)
T d2gb3a1 110 ----PGDEILVLEPFYANYNAFAKIAGV---KLIPVTRRME-EGFAIPQNLESFINE------RTKGIVLSNPCNPTGVV 175 (389)
T ss_dssp ----TTCEEEEEESCCTHHHHHHHHHTC---EEEEEECCGG-GTSCCCTTGGGGCCT------TEEEEEEESSCTTTCCC
T ss_pred ----CCCeEEEeCCCCccccccccccCc---cccccccccc-cccchhhhhhhhccc------CccEEEeCCCCcccccc
Confidence 566788888899999999999999 8999998753 334454555544333 24577888899999988
Q ss_pred C---CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhc
Q 038818 247 D---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALS 322 (486)
Q Consensus 247 d---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~ 322 (486)
- .+++|.++|++|+++++.|.+|+....... ..........-..+..+..|.++.| .-+|+++..++........
T Consensus 176 ~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~ 254 (389)
T d2gb3a1 176 YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMK 254 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHH
T ss_pred chHHHHHHHHhhcccCCEEEEEeccccccccccc-cccccccccccccccccccccccCcccceeeeeccchhHHHHHhh
Confidence 4 488999999999999999999966443221 1111222222334556677777765 5689888876644322111
Q ss_pred CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 323 TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--GVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 323 ~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
....+. ....+...++...+ ..+.+++..++..++++++.+.|++++... ...|.
T Consensus 255 ~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~ 311 (389)
T d2gb3a1 255 LAQGRL----------------------APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKR-FTKPS 311 (389)
T ss_dssp HHHHSC----------------------CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-BCCCS
T ss_pred hhhccc----------------------cccccccccccccccccchhcccccccccccchhhhhhhhhhcccc-ccCCC
Confidence 110000 01112222222222 445677788888899999999999985443 33444
Q ss_pred ee-EEEEEeecCCCCCCCCCCccchHHHHHHHHHH--HHhcCcEEEeeeeE-----CCEeEEEEEecCCCCcHHHHHHHH
Q 038818 401 FA-VVCFRVLPSASGLGDGKANEGANELNRKLLES--INASGQLYVSHGMV-----AGIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 401 ~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~g~~~~~~~~~-----~~~~~lR~~~~~~~tt~~did~~i 472 (486)
.+ .+.+++... ...++.+++.+. +..+|+.++.+..+ .+.+++|+++. .+++++++.+
T Consensus 312 ~g~~~~~~lp~~-----------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~---~~~~~l~~a~ 377 (389)
T d2gb3a1 312 GAFYITAELPVE-----------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV---LEKDLLSRAI 377 (389)
T ss_dssp BSSEEEEECSSS-----------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC---SCHHHHHHHH
T ss_pred ceEEEEEeCCCC-----------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc---CCHHHHHHHH
Confidence 44 444455322 113344433332 11234433333322 13679999984 4677899999
Q ss_pred HHHHHHHHHHh
Q 038818 473 KVVQEKLDGIL 483 (486)
Q Consensus 473 ~~l~~~~~~l~ 483 (486)
+.|.+.+++..
T Consensus 378 ~~L~~~lk~f~ 388 (389)
T d2gb3a1 378 DVLMEGLKMFC 388 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999888754
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.74 E-value=4e-16 Score=157.29 Aligned_cols=334 Identities=12% Similarity=0.033 Sum_probs=187.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCc
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTH 182 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 182 (486)
..|..+|...++|+. +++++|++ .++++++||+||..|+.+++.+.... +..+..++.+...|
T Consensus 69 ~~y~~~~~~~~le~~----~a~l~g~~---------~~~~~~sGt~A~~~a~~~~~~~g~~~----~~~~~~~i~~~~h~ 131 (465)
T d1ax4a_ 69 EAYAGSRNYYDLKDK----AKELFNYD---------YIIPAHQGRGAENILFPVLLKYKQKE----GKAKNPVFISNFHF 131 (465)
T ss_dssp CCSSSCHHHHHHHHH----HHHHHCCC---------EEEEESSHHHHHHHHHHHHHHHHHHT----TCCSSCEEEESSCC
T ss_pred hhhccChHHHHHHHH----HHHHHCCC---------EEEECCCcHHHHHHHHHHHHHHHHhc----CCCCCeEEeccchh
Confidence 456677777777754 67788875 46999999999999999998753221 22333344454445
Q ss_pred hHHHHHHHHcCCCCCCeEEEecC--------CCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc-cc---CCch
Q 038818 183 SALQKAAQIAGIDPKNFRAIKTT--------KSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT-TV---DPLG 250 (486)
Q Consensus 183 ~s~~~a~~~~G~g~~~v~~v~~d--------~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G-~i---dpl~ 250 (486)
.+....+...|. ..+.++.+ ....+.+|+++|+++|++.... .+.+++.+..++..| .+ ++++
T Consensus 132 ~t~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~l~ 206 (465)
T d1ax4a_ 132 DTTAAHVELNGC---KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD--NIVAIVSTVTCNSAGGQPVSMSNLK 206 (465)
T ss_dssp HHHHHHHHHTTC---EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred hhhHHHHHHcCC---eeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc--cccceeeccccccCceecCCHHHHH
Confidence 556655666776 55444221 1235789999999999876432 233344444333333 22 4588
Q ss_pred HHHHHHHHhCceEEeeccccchhccC----------ccchhhhc-CCCCCCceeeccccccCCCCcceEEEeeCchHHHH
Q 038818 251 PLCDIAKRYSIWVHVDAAYAGSACIC----------PEFRHFID-GIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIK 319 (486)
Q Consensus 251 ~I~~i~~~~g~~lhvD~a~g~~~~~~----------~~~~~~~~-~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~ 319 (486)
+|+++|++||++||+|+|+..+.... ........ ....+|+++++.||.+++|.+ |++++++......
T Consensus 207 ~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~-g~l~~~~~~~~~~ 285 (465)
T d1ax4a_ 207 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFT 285 (465)
T ss_dssp HHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHH
T ss_pred HHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccc-eeEeecchHHHHH
Confidence 99999999999999999985432210 00110000 123589999999999887754 7777776543221
Q ss_pred Hhc-CCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEec
Q 038818 320 ALS-TNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVAN-LRNFLRSHVRMAQLFQELVGGDNRFEIVA 397 (486)
Q Consensus 320 ~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 397 (486)
... ....+.... +....+.....++.....+. ..+.+++..+++++|.+.|++. ++.++.
T Consensus 286 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~ 347 (465)
T d1ax4a_ 286 LARQRCVPMEGFV-----------------TYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQY 347 (465)
T ss_dssp HHHHHHHHHTCST-----------------TTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCS
T ss_pred hhhccccccccCC-----------------CcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh-cCcccc
Confidence 111 000010000 00011112222222211121 2345667777889999999987 677765
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeee-------------ECCEeEEEEEecCCCCc
Q 038818 398 PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGM-------------VAGIYFIRFAVGATLTE 464 (486)
Q Consensus 398 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------------~~~~~~lR~~~~~~~tt 464 (486)
++....+.+......... ..........+.+.+.+.|+....... ......+|+++--...|
T Consensus 348 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T 422 (465)
T d1ax4a_ 348 PTGGHAVFVDCKKLVPQI-----PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYT 422 (465)
T ss_dssp SCCSSEEEEESTTTCTTS-----CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSC
T ss_pred CCCcceeeeehhhhcCCC-----ccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCC
Confidence 555444443322111000 011111122333444556753322111 01134799986322348
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038818 465 DRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 465 ~~did~~i~~l~~~~~~l 482 (486)
++|||+++++|+++.++.
T Consensus 423 ~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 423 NDHMDYIADALIGLKEKF 440 (465)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999987654
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=3.1e-17 Score=161.26 Aligned_cols=329 Identities=11% Similarity=0.080 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcc
Q 038818 87 AGFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIG 166 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 166 (486)
|..+.+.+...+......|....+..++.+.+.+|+.+.+|.+... ....++|+|+++++..++.+..+
T Consensus 41 p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~----~~~I~vt~G~~~al~~~~~~l~~------- 109 (382)
T d1u08a_ 41 PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDA----DSDITVTAGATEALYAAITALVR------- 109 (382)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCT----TTTEEEESSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCC----CceEEeccchHHHHHHHHhhccc-------
Confidence 4456666666666655678777778899999999999999975421 12589999999999887776654
Q ss_pred ccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccccc
Q 038818 167 RENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTV 246 (486)
Q Consensus 167 ~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~i 246 (486)
+++.|+++...++.....+...|. .+..++.+. ..+.+|++++++++.+. +.+++++.++|++|.+
T Consensus 110 ----~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~-~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~v 175 (382)
T d1u08a_ 110 ----NGDEVICFDPSYDSYAPAIALSGG---IVKRMALQP-PHFRVDWQEFAALLSER------TRLVILNTPHNPSATV 175 (382)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCT-TTCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCC
T ss_pred ----ccceEEEecccccchhhhhhhccc---cceeccccc-ccccCCHHHHhhhhccC------ccEEEECCCCcccccc
Confidence 677788888899999999999998 888888875 45789999998876654 3478889999999999
Q ss_pred CC---chHHHHHHHHhCceEEeeccccchhccCccchhhhcC--CCCCCceeeccccccCCC-CcceEEEeeCchHHHHH
Q 038818 247 DP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDG--IEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKA 320 (486)
Q Consensus 247 dp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~--~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~ 320 (486)
-+ +++|.++|++++++++.|..|.-.............. ...--.+..+..|.++.| ..+|+++..++ .....
T Consensus 176 ~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~-~~~~~ 254 (382)
T d1u08a_ 176 WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAP-ISAEI 254 (382)
T ss_dssp CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHH-HHHHH
T ss_pred cccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccch-hHHHH
Confidence 65 5677788889999999999885433221111110000 001124566677877644 67898876443 32221
Q ss_pred hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCC
Q 038818 321 LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRN 400 (486)
Q Consensus 321 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 400 (486)
.. ....... +.-......+..++. .+.+.+..+.+...+.++.+.+.+... ++++. +|+
T Consensus 255 ~~-~~~~~~~-----------------~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~-~p~ 313 (382)
T d1u08a_ 255 RK-VHQYLTF-----------------SVNTPAQLALADMLR-AEPEHYLALPDFYRQKRDILVNALNES-RLEIL-PCE 313 (382)
T ss_dssp HH-HHHHHTS-----------------SCCHHHHHHHHHHHH-HCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEEC-CCC
T ss_pred Hh-hhccccc-----------------ccccccccccccccc-cchHHHHHHHHHHHhhhhhhhhhhccC-CcEEe-cCC
Confidence 11 0011100 000011122222232 245677888888888888998888765 78875 555
Q ss_pred eeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHH-hcCcEEEeeeeE----CCEeEEEEEecCCCCcHHHHHHHHHH
Q 038818 401 FAVVCF-RVLPSASGLGDGKANEGANELNRKLLESIN-ASGQLYVSHGMV----AGIYFIRFAVGATLTEDRHVIAAWKV 474 (486)
Q Consensus 401 ~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~----~~~~~lR~~~~~~~tt~~did~~i~~ 474 (486)
.+.+.| ++.... ..+ ..++.+++. +.|++++++..+ .+.+++|+++. ++++++++.++.
T Consensus 314 gg~~~~~~~~~~~--------~~d----~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~---~~~e~l~~al~R 378 (382)
T d1u08a_ 314 GTYFLLVDYSAVS--------TLD----DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKESTLLAAAER 378 (382)
T ss_dssp BSSEEEEECTTTC--------CSC----HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCHHHHHHHHHH
T ss_pred ceEEEEEecCCCC--------CCC----HHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe---CCHHHHHHHHHH
Confidence 555444 443211 011 223455554 457765554433 24578999984 356788888887
Q ss_pred HHH
Q 038818 475 VQE 477 (486)
Q Consensus 475 l~~ 477 (486)
|++
T Consensus 379 L~~ 381 (382)
T d1u08a_ 379 LRQ 381 (382)
T ss_dssp HTT
T ss_pred HhC
Confidence 765
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=1.8e-17 Score=161.79 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEec-CCCchHHHHHHHHc
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGS-DQTHSALQKAAQIA 192 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s-~~~H~s~~~a~~~~ 192 (486)
++.++.+..++.++..+. ..+++|+||++|++.++.+. .. ++.+|+++ ..+|.++..+++..
T Consensus 51 ~~~~l~~~~~~~~~~~~~------e~~~~~~~~~~a~~~~l~al-~~----------~~~vi~~~~~~~~~~~~~~~~l~ 113 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDEN------DKCVGFNRTSSAILATILAL-KP----------KKVIHYLPELPGHPSIERSCKIV 113 (366)
T ss_dssp HHHHHHHHHHHHHTCCTT------EEEEEESSHHHHHHHHHHHH-CC----------SEEEEECSSSSCCTHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCCCc------cEEEEeCCHHHHHHHHHHHh-CC----------CCEEEEecCCCcchhHHHHHHhc
Confidence 344555666676765543 26899999999998777653 21 45555555 47899999999999
Q ss_pred CCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcc-ccccCCchHHHHHHHHhCceEEeeccccc
Q 038818 193 GIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTA-ITTVDPLGPLCDIAKRYSIWVHVDAAYAG 271 (486)
Q Consensus 193 G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~-~G~idpl~~I~~i~~~~g~~lhvD~a~g~ 271 (486)
|. ++ ++.+ |+++|+++|++.+ .+|+++.++|+ .+.++++++|+++|++||+|+++|++|+.
T Consensus 114 g~---~~--v~~~-------d~e~l~~~i~~~t------k~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~ 175 (366)
T d2aeua1 114 NA---KY--FESD-------KVGEILNKIDKDT------LVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGA 175 (366)
T ss_dssp TC---EE--EEES-------CHHHHHTTCCTTE------EEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred CC---eE--ECCC-------CHHHHHHhcCCCc------eEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccc
Confidence 88 54 4432 7899999988765 36777777665 55788999999999999999999999976
Q ss_pred hhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCc
Q 038818 272 SACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNP 314 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~ 314 (486)
+............ .++|.++.+.||+++++ .+|+++.+++
T Consensus 176 ~~~~~~~~~~~~~--~~~di~~~S~sK~~~g~-~~G~i~~~~~ 215 (366)
T d2aeua1 176 RVRLLFNQPPALK--LGADLVVTSTDKLMEGP-RGGLLAGKKE 215 (366)
T ss_dssp HHHHHTTCCCHHH--HTCSEEEEETTSSSSSC-SCEEEEEEHH
T ss_pred cccccccCCCHhh--cCceEEEeccccccccc-ceeEEEecHH
Confidence 5432111111000 16899999999988765 5677776554
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.72 E-value=2.9e-16 Score=156.08 Aligned_cols=343 Identities=10% Similarity=0.043 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhcCCC---ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV---GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILN 163 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 163 (486)
|..+.+.+...+... ...|....+..++.+.+.+|+.+.+|.+... ..++++|+|+++|+..++.+..+
T Consensus 41 p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p----~~~I~it~G~~~al~~~~~~l~~---- 112 (418)
T d2r5ea1 41 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP----MTEVLVTVGAYEALYATIQGHVD---- 112 (418)
T ss_dssp CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT----TTSEEEESHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc----cceEEEcCCCchhhhhhhhhccc----
Confidence 455666666655432 2346666677889999999999999976320 12699999999998877776654
Q ss_pred HccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCC--------CcccCHHHHHHHHHHHHHCCCccEEEE
Q 038818 164 EIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSS--------SFTLTPESLQAAIDLDIQAGLIPLFLC 235 (486)
Q Consensus 164 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~--------~~~~d~~~L~~~l~~~~~~g~~p~~vv 235 (486)
+++.|+++..+++.+...+...|. +++.|++++++ .+.++.+.+.+..... +.+++
T Consensus 113 -------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 176 (418)
T d2r5ea1 113 -------EGDEVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMII 176 (418)
T ss_dssp -------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTT------EEEEE
T ss_pred -------cccceeccccccchhhHHHHHcCC---eEEEEEecccccccchhhhhhhhhHHHHhhhhhcc------cccee
Confidence 677888999999999999999999 99999986532 2467888877665433 45788
Q ss_pred eecCCccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCC-CCcceEE
Q 038818 236 ATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFT-TLDCCCL 309 (486)
Q Consensus 236 ~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~-p~~~g~~ 309 (486)
++.++||||.+-+ +++|+++|++||++++.|++|............. +.+...--.+..+..|.++. ..-+|++
T Consensus 177 i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~ 256 (418)
T d2r5ea1 177 INTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWA 256 (418)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEE
T ss_pred cCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccc
Confidence 8899999998854 6778899999999999999996543322111111 11111111334578899874 4678887
Q ss_pred EeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHH------hchHHHHHHHHHHHHHHHHH
Q 038818 310 WVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRS------FGVANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 310 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~------~g~~g~~~~~~~~~~~a~~l 383 (486)
+..++ .+....... .... ..++.. ....+...+.. ...+.+.++.++....++++
T Consensus 257 ~~~~~-~i~~~~~~~-~~~~----------------~~~~~~-~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l 317 (418)
T d2r5ea1 257 YGPEA-LLKNLQMVH-QNCV----------------YTCATP-IQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYM 317 (418)
T ss_dssp ESCHH-HHHHHHHHH-TTTT----------------CSCCHH-HHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred cccch-hhhhhhhcc-cccc----------------cccccc-hhhhccccccccccccccchhhHHHHHHHHHHhhhhH
Confidence 76544 222111100 0000 000000 00111111111 12345677778888899999
Q ss_pred HHHHhCCCCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHHHh-cCcEEEeeeeEC-------CEeEE
Q 038818 384 QELVGGDNRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESINA-SGQLYVSHGMVA-------GIYFI 454 (486)
Q Consensus 384 ~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~-------~~~~l 454 (486)
.+.|+++ ++++. +|+.+.+.| .+.+............ .....++.+.|.+ .|++++++..+. +.+++
T Consensus 318 ~~~L~~~-g~~~~-~P~gg~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~i 393 (418)
T d2r5ea1 318 ASFLAEV-GMNPT-VPQGGYFMVADWSSLDSKVDLTQETD--ARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV 393 (418)
T ss_dssp HHHHHHT-TCEEE-ECSBSSEEEEECGGGSTTCCGGGCCC--SSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEE
T ss_pred HhhHhhc-CCccc-CCCceeEEEEEcccccccccchhccc--ccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEE
Confidence 9999987 88876 455555544 4433110000000000 1112345555544 477554443331 24689
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 455 RFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 455 R~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
|+++. .++++|++.++.|++.+
T Consensus 394 Ris~~---~~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 394 RYCFF---KKDENLQKAAEILRKWK 415 (418)
T ss_dssp EEECC---SCHHHHHHHHHHHHHHH
T ss_pred EEEec---CCHHHHHHHHHHHHHHH
Confidence 99984 36779999999998865
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.72 E-value=5.9e-16 Score=150.76 Aligned_cols=342 Identities=13% Similarity=0.080 Sum_probs=218.3
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-CCCcc------ccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-NVVGF------NWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-n~~~~------~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
.+..+++..-....+.+++.+.+ |.+.. .|.......++|..+++...++||++.... ..-+=..+|+.
T Consensus 33 ~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~----~anVqp~SGs~ 108 (470)
T d1rv3a_ 33 GLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCW----GVNVQPYSGSP 108 (470)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTE----EEECCCSSHHH
T ss_pred CceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhc----cccccccCCcc
Confidence 45666665544444555555544 44432 233455678999999999999999975421 12344668899
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEec---CCCchHHHHH-------HHHcCCCCCCeEEEecCCCCCcccCHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGS---DQTHSALQKA-------AQIAGIDPKNFRAIKTTKSSSFTLTPESLQ 218 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s---~~~H~s~~~a-------~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~ 218 (486)
||+.++.+... +++.|+.- .-.|.|.... +.-... +.+..+++++ ++.+|.++++
T Consensus 109 An~av~~all~-----------pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~---~~~~y~v~~~-~~~IDyd~l~ 173 (470)
T d1rv3a_ 109 ANFAVYTALVE-----------PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFF---ESMAYKVNPD-TGYIDYDRLE 173 (470)
T ss_dssp HHHHHHHHHTC-----------TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHS---EEEEECBCTT-TCSBCHHHHH
T ss_pred HHHHHHHHhcC-----------CCCeEeeeccccCCcccccccccCCCccccccee---EeeEEEEecc-cCcccHHHHH
Confidence 99877766544 56666542 2356554211 111123 6778888864 5799999999
Q ss_pred HHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeecccc
Q 038818 219 AAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHK 298 (486)
Q Consensus 219 ~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK 298 (486)
+..++.+ |.+|++ |.+..-..-|++++++||++.|++|++|+||-.+++....+..-+ +.+|.++.++||
T Consensus 174 ~~a~~~k-----PklIi~--G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl---~~aDvvt~tTHK 243 (470)
T d1rv3a_ 174 ENARLFH-----PKLIIA--GTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EHCHVVTTTTHK 243 (470)
T ss_dssp HHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GTCSEEEEESSG
T ss_pred HHHHhhC-----cceEee--chhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChh---heeeeeeeehhh
Confidence 9887653 666554 344445667999999999999999999999977665443333333 478999999999
Q ss_pred ccCCCCcceEEEeeCchH-------------HHHHh--cCCcccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHH
Q 038818 299 WFFTTLDCCCLWVKNPNA-------------LIKAL--STNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLR 362 (486)
Q Consensus 299 ~l~~p~~~g~~~~~~~~~-------------~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~ 362 (486)
.|.+|.| |+++++++.. +.+.+ ...| +++++-... ..++..+++
T Consensus 244 tlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFP-------------------g~qggph~~~IAa~Ava~~ 303 (470)
T d1rv3a_ 244 TLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFP-------------------GLQGGPHNHAIAGVAVALK 303 (470)
T ss_dssp GGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHHHTT-------------------TTCCSCCHHHHHHHHHHHH
T ss_pred hccCCcc-eEEEEccccccccccccchhHHHHHHHHhhhcCc-------------------cccccchhhHHHHHHHHHH
Confidence 9999974 8888876410 11111 0111 122222222 234445566
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-CCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE
Q 038818 363 SFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-PRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL 441 (486)
Q Consensus 363 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 441 (486)
.....-+.+..++..++|+.|.+.|.+. |++++. ..+.+++.+.+.+.+.. . ++..+.|.+.|+.
T Consensus 304 ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlvdl~~~g~~----------g---~~ae~~Le~~gI~ 369 (470)
T d1rv3a_ 304 QAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTD----------G---GRAEKVLEACSIA 369 (470)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCC----------H---HHHHHHHHHTTEE
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEEeecccCCc----------H---HHHHHHHHHcCcE
Confidence 5555567899999999999999999987 899975 34567777776543210 2 2333344455764
Q ss_pred EEeeeeEC-----CEeEEEEEe---cCCCCcHHHHHHHHHHHHHHHH
Q 038818 442 YVSHGMVA-----GIYFIRFAV---GATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 442 ~~~~~~~~-----~~~~lR~~~---~~~~tt~~did~~i~~l~~~~~ 480 (486)
+-.-+... ....+|+.. +.....++|+.++.+.|.++++
T Consensus 370 ~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 370 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 32211111 135699987 3455677899999999888764
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4.4e-16 Score=151.28 Aligned_cols=285 Identities=10% Similarity=0.060 Sum_probs=186.0
Q ss_pred HHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCC
Q 038818 117 IVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDP 196 (486)
Q Consensus 117 ~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~ 196 (486)
++++++++.+|++++ ++++|+|+++++..++.+.... ++.+|+++..++......++..|.
T Consensus 60 ~Lr~~ia~~~gv~pe-------~I~it~Gs~eai~~~~~~~~~p----------gd~~Vl~~~P~y~~~~~~~~~~g~-- 120 (354)
T d1fg7a_ 60 AVIENYAQYAGVKPE-------QVLVSRGADEGIELLIRAFCEP----------GKDAILYCPPTYGMYSVSAETIGV-- 120 (354)
T ss_dssp HHHHHHHHHHTSCGG-------GEEEESHHHHHHHHHHHHHCCT----------TTCEEEECSSSCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCChH-------HeeeccCchHHHHHHHHHhhcc----------ccccccccccccccchhhhhccCc--
Confidence 567888999999876 7999999999988777765441 234788888899999999999999
Q ss_pred CCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHH--HhCceEEeeccccchhc
Q 038818 197 KNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAK--RYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 197 ~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~--~~g~~lhvD~a~g~~~~ 274 (486)
+++.++.++ ++.+|++++++++.+ +.+|+.+.++|++|.+-+-+++..++. +++.++++|.+|.-+..
T Consensus 121 -~v~~~~~~~--~~~~d~~~l~~~~~~-------~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~ 190 (354)
T d1fg7a_ 121 -ECRTVPTLD--NWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCP 190 (354)
T ss_dssp -EEEECCCCT--TSCCCHHHHHTSCTT-------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSG
T ss_pred -eeecccccc--ccccchhhhhhcccc-------cceeeccCCCccceeEeeecccccccccccccccccccccchhhcc
Confidence 998888864 689999999876532 457889999999999977544444332 35777888887754321
Q ss_pred cCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~ 353 (486)
. ..... ......-..+..++.|.++ +...+|+++.. ++..........++. ..
T Consensus 191 ~-~~~~~-~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~-~~~i~~l~~~~~~~~-----------------------~~ 244 (354)
T d1fg7a_ 191 Q-ASLAG-WLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAPYP-----------------------LS 244 (354)
T ss_dssp G-GCSGG-GTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSSC-----------------------SC
T ss_pred c-cccch-hhcccccceEEeCCccccCCCcccccccccc-chhhhhhhhhcCccc-----------------------hh
Confidence 1 11111 1111122245568999998 44678887654 433332221111110 01
Q ss_pred chHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHH
Q 038818 354 ALKLWLVLRSFGV---ANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRK 430 (486)
Q Consensus 354 ~l~~~~~l~~~g~---~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (486)
......+...+.. +.+...+++..+.++++.+.+.+++++..+.++..+.+.+++.. ...
T Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~-----------------~~~ 307 (354)
T d1fg7a_ 245 TPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKA-----------------SSA 307 (354)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETT-----------------HHH
T ss_pred hHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCC-----------------HHH
Confidence 1222222223322 33445556677788889999999988766656666666666542 235
Q ss_pred HHHHHHhcCcEEEeeeeECC-EeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 431 LLESINASGQLYVSHGMVAG-IYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 431 l~~~l~~~g~~~~~~~~~~~-~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
+.+.|.++|+++..+..+.+ .+++|++++ ++++.++++++|+.
T Consensus 308 ~~~~L~~~gIlvr~~~~~~~~~~~lRisig----t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 308 VFKSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRVIDALRA 351 (354)
T ss_dssp HHHHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHT
T ss_pred HHHHHHHCCcEEecCCCCCCCCCEEEEEeC----CHHHHHHHHHHHhh
Confidence 67777788986544443322 569999984 56789999999873
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.72 E-value=8.5e-16 Score=148.57 Aligned_cols=288 Identities=18% Similarity=0.204 Sum_probs=195.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+ .++.+-|.+ .++++++|+.|+..++..... +++.|+++...+....
T Consensus 61 ~nPT~~~LE~----~la~LEgg~---------~a~~~sSGmaAi~~~l~~ll~-----------~Gd~vi~~~~~Yg~t~ 116 (397)
T d1y4ia1 61 GNPTTDALEK----KLAVLERGE---------AGLATASGISAITTTLLTLCQ-----------QGDHIVSASAIYGCTH 116 (397)
T ss_dssp SCHHHHHHHH----HHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSSCHHHH
T ss_pred CCHHHHHHHH----HHHHHhCCc---------cceeehHHHHHHHHHHhhccC-----------CCCeeeeecccccccc
Confidence 4565566665 477776654 468888888777666655433 6778888888886644
Q ss_pred H----HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 K----AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~----a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
. .....|+ ++..++. .|++.++++|++++ .+|.+..++|++..+-||++|+++|+++|++
T Consensus 117 ~~~~~~l~~~Gi---~~~~vd~-------~d~~~~~~~i~~~T------klv~~Esp~NP~l~v~Di~~i~~iA~~~gi~ 180 (397)
T d1y4ia1 117 AFLSHSMPKFGI---NVRFVDA-------GKPEEIRAAMRPET------KVVYIETPANPTLSLVDIETVAGIAHQQGAL 180 (397)
T ss_dssp HHHHTHHHHTTC---EEEEECT-------TSHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHTTCE
T ss_pred hhhhcccCCCce---EeeccCC-------CCHHHHHHhcCCCC------cEEEecCCcccceeecccHHHHHHhhcCCce
Confidence 4 3456688 8888763 27899999987655 4899999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||.+++.....-| +.. +||.+..+..|++++.- -+|++..+++...+..+.... .+
T Consensus 181 ~vvDnT~atP~~~~P-l~~------GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~-~~------------ 240 (397)
T d1y4ia1 181 LVVDNTFMSPYCQQP-LQL------GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK-DI------------ 240 (397)
T ss_dssp EEEECTTTCTTTCCG-GGG------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH-HT------------
T ss_pred EEecCcccCcccCcc-hhc------CCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHH-hC------------
Confidence 999999988665544 222 79999999999998543 356666655433211111000 00
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEec-C-----C-----------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVA-P-----R-----------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~-----~-----------~~~~ 403 (486)
.|-...+..+|+.++ |.+-+.-++++..++|..+.+.|+++|.++-+. | | ..++
T Consensus 241 -------~G~~l~p~~a~l~~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~ 311 (397)
T d1y4ia1 241 -------TGGCMSPFNAWLTLR--GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGI 311 (397)
T ss_dssp -------TCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSE
T ss_pred -------cCCcCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeE
Confidence 111235667787776 557788899999999999999999999986543 2 1 2578
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCc-------EEEeeee-----E-------C--CEeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQ-------LYVSHGM-----V-------A--GIYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~-------~~~~~~~-----~-------~--~~~~lR~~~~~ 460 (486)
++|.+.+. .+...++.+.|. ..+. ++..+.. + . ..+.+|++++-
T Consensus 312 ~sf~~~~~-------------~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl 378 (397)
T d1y4ia1 312 ISFEIAGG-------------LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL 378 (397)
T ss_dssp EEEEETTH-------------HHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS
T ss_pred EEEEecCC-------------HHHHHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc
Confidence 89987642 233345666442 1111 1111110 0 1 24589999953
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~ 481 (486)
||++.+++.|++.++.
T Consensus 379 -----Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 379 -----EDPEDIINDLEHAIRK 394 (397)
T ss_dssp -----SCHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 2677778777777654
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.71 E-value=5.9e-16 Score=150.20 Aligned_cols=342 Identities=12% Similarity=0.054 Sum_probs=204.0
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-CCCccc------cccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-NVVGFN------WMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-n~~~~~------~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
.+..+++....+..+.+++.+.+ |.+... |.......++|.-+++...++||++... ++.-+=..+|+.
T Consensus 29 ~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~----w~vNVqp~SGs~ 104 (463)
T d2a7va1 29 GLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ----WGVNVQPYSGSP 104 (463)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTT----EEEECCCSSHHH
T ss_pred CeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchh----ccCCccccccHH
Confidence 35555555444444555554444 444322 2334457899999999999999998642 011244668899
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEec---CCCchHHHH-----HHHHcCCCCCCeEEEecCCCCCcccCHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGS---DQTHSALQK-----AAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAA 220 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s---~~~H~s~~~-----a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~ 220 (486)
||+.++.+..+ |++.|+.- .-.|.|... .....|... ++..+++|+ +++.+|.+++++.
T Consensus 105 An~av~~all~-----------pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~-~~~~Y~~d~-~~~~IDyd~~~~~ 171 (463)
T d2a7va1 105 ANLAVYTALLQ-----------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF-ESMPYKLNP-KTGLIDYNQLALT 171 (463)
T ss_dssp HHHHHHHHHCC-----------SCEECCC--------------------------------CCBCT-TTCSBCHHHHHHH
T ss_pred HHHHHHHHHcC-----------CCceEEeeccCcCcccccccccccccccceeeEe-eeeeeeccC-CCCcCcHHHHHHH
Confidence 99776665543 56666532 335665442 222333311 344555664 3579999999999
Q ss_pred HHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeecccccc
Q 038818 221 IDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWF 300 (486)
Q Consensus 221 l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l 300 (486)
.++.+ |.+|++ |.+..-..-|++++++||++.|++|++|+||-.+++....+..-+ +.+|.++.++||.|
T Consensus 172 a~~~k-----PklIi~--G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~---~~aDvvt~tTHKTl 241 (463)
T d2a7va1 172 ARLFR-----PRLIIA--GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTL 241 (463)
T ss_dssp HHHHC-----CSEEEE--CCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGG
T ss_pred HhhcC-----CceEEe--cccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChh---hhhhhhhchhhhhh
Confidence 88753 666554 334444667999999999999999999999977766554443333 47999999999999
Q ss_pred CCCCcceEEEeeCch-----------------HHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCC-chHHHHHHH
Q 038818 301 FTTLDCCCLWVKNPN-----------------ALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFR-ALKLWLVLR 362 (486)
Q Consensus 301 ~~p~~~g~~~~~~~~-----------------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~ 362 (486)
.+|. +|++++++.. .+..+ ..| +++++-... ..+...+++
T Consensus 242 rGPr-gGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~a--vFP-------------------g~qggph~h~iAa~Ava~~ 299 (463)
T d2a7va1 242 RGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRINFA--VFP-------------------SLQGGPHNHAIAAVAVALK 299 (463)
T ss_dssp CSCS-CEEEEEECSEEEEETTTEEEEECCCHHHHHHH--HTT-------------------TTCCSCCHHHHHHHHHHHH
T ss_pred cCCC-ceEEEEcccccccccccCccchhHHHHHhhhh--cCc-------------------ccchhhhhhhHHHHHHHHH
Confidence 9997 6788887631 11111 111 122222222 234444555
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecC-CCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcE
Q 038818 363 SFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAP-RNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQL 441 (486)
Q Consensus 363 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 441 (486)
..-...+++..++..++|+.|.+.|.+. |++++.. .+.+++.+.+.+... .. +...+.|.+.|+.
T Consensus 300 ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~~~----------~G---~~ae~~Le~~gI~ 365 (463)
T d2a7va1 300 QACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGL----------DG---ARAERVLELVSIT 365 (463)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTC----------CH---HHHHHHHHHTTEE
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeeccccCC----------CH---HHHHHHHHhccCc
Confidence 5445668899999999999999999987 8999854 456777777755321 02 2334445555764
Q ss_pred EEeeeeEC-----CEeEEEEEe---cCCCCcHHHHHHHHHHHHHHHH
Q 038818 442 YVSHGMVA-----GIYFIRFAV---GATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 442 ~~~~~~~~-----~~~~lR~~~---~~~~tt~~did~~i~~l~~~~~ 480 (486)
+-.-+... ....||+.. +.....++|+.++.+.|.+++.
T Consensus 366 ~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 366 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 22211111 134699987 2334567899999888887663
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.6e-16 Score=158.02 Aligned_cols=344 Identities=10% Similarity=0.044 Sum_probs=210.6
Q ss_pred HHHHHHHHHhhcCCC--ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHH
Q 038818 87 AGFLGEMLSSGFNVV--GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNE 164 (486)
Q Consensus 87 ~~~~~~~l~~~~n~~--~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~ 164 (486)
|..+.+.+...+... ...|....+..++.+.+.+|+.+.+|.+.+. ..++++|+|+++++..++.+...
T Consensus 40 p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~----~~~I~it~G~~~al~~~~~~l~~----- 110 (418)
T d1w7la_ 40 PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP----LRNVLVTVGGYGALFTAFQALVD----- 110 (418)
T ss_dssp CHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH----HHHEEEESHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCc----ccceeeccCcHHHHHHHHHhhcc-----
Confidence 456667777666433 2357666778899999999999999986420 02689999999998877766644
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCC----------CCcccCHHHHHHHHHHHHHCCCccEEE
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKS----------SSFTLTPESLQAAIDLDIQAGLIPLFL 234 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~----------~~~~~d~~~L~~~l~~~~~~g~~p~~v 234 (486)
++..|+++...+......+...|. +++.++.++. .++.+|.+++.....+. ..++
T Consensus 111 ------~g~~vlv~~p~~~~y~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~i 175 (418)
T d1w7la_ 111 ------EGDEVIIIEPFFDCYEPMTMMAGG---RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKAL 175 (418)
T ss_dssp ------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTT------EEEE
T ss_pred ------CCceeeccccccchhHHHHHHcCC---EeeccccccccccccccccccCcccchhhhhcccccc------ccce
Confidence 677888888888899999999999 8888876531 24567777776554432 4578
Q ss_pred EeecCCccccccC---CchHHHHHHHHhCceEEeeccccchhccCccchhh--hcCCCCCCceeeccccccCCC-CcceE
Q 038818 235 CATVGTTAITTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDGIEGADSFSLNAHKWFFTT-LDCCC 308 (486)
Q Consensus 235 v~~~gtt~~G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~~~~aDsi~~~~hK~l~~p-~~~g~ 308 (486)
+.+.++||+|.+- .+++|+++|++++++++.|.+|.......+..... +.+...-..+..++.|.++.| ..+|+
T Consensus 176 ~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~ 255 (418)
T d1w7la_ 176 VLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGW 255 (418)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEE
T ss_pred eccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccc
Confidence 8899999999884 57899999999999999999996654322211111 111111134567789987754 67999
Q ss_pred EEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHH---Hh---chHHHHHHHHHHHHHHHH
Q 038818 309 LWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLR---SF---GVANLRNFLRSHVRMAQL 382 (486)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~---~~---g~~g~~~~~~~~~~~a~~ 382 (486)
++..++ ......... .+.. ...+ ......+..++. .. ..+.+....+...++++.
T Consensus 256 ~v~~~~-~~~~l~~~~-~~~~----------------~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 316 (418)
T d1w7la_ 256 VLGPDH-IMKHLRTVH-QNSV----------------FHCP-TQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDH 316 (418)
T ss_dssp EECCHH-HHHHHHHHH-HTTT----------------SCCC-HHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHH
T ss_pred cccchh-hhhhhcccc-cccc----------------cccc-chhhHHHHHHhhhccccccccccccccchhhhhhhhhh
Confidence 887553 222111100 0000 0000 000011111111 11 134566777788888999
Q ss_pred HHHHHhCCCCeEEecCCCeeEEEE-EeecCCCCCCCCCCccchHHHHHHHHHHH-HhcCcEEEeeeeEC-------CEeE
Q 038818 383 FQELVGGDNRFEIVAPRNFAVVCF-RVLPSASGLGDGKANEGANELNRKLLESI-NASGQLYVSHGMVA-------GIYF 453 (486)
Q Consensus 383 l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~-------~~~~ 453 (486)
+.+.|++. ++++. +|+.+.+.| .+........+-..... ......+.++| .+.|++++++..+. +.++
T Consensus 317 l~~~L~~~-g~~~~-~P~gg~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~ 393 (418)
T d1w7la_ 317 MIRSLQSV-GLKPL-IPQGSYFLITDISDFKRKMPDLPGAVD-EPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHY 393 (418)
T ss_dssp HHHHHHTT-TCEEE-ECSBSSEEEEECHHHHHHCCCCCCCTT-CCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSE
T ss_pred hhhhhhhc-CCccc-CCCceeEEEEECcccccccchhccccc-cccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCE
Confidence 99999987 88876 445454444 44310000000000000 11123445444 45687655554332 3579
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
+|+++. +++++++++++.|++..
T Consensus 394 iRis~~---~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 394 IRFCFV---KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp EEEECC---CCHHHHHHHHHHHHHHH
T ss_pred EEEEEc---CCHHHHHHHHHHHHHHh
Confidence 999984 36778999999988764
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=1e-15 Score=147.91 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=160.2
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. +++|-|.+ .++++++|..|+..++.+... +++.|+++...+....
T Consensus 57 ~nPT~~~LE~~----la~LEg~~---------~a~~~~SGmaAi~~~l~~l~~-----------~Gd~vl~~~~~Yg~t~ 112 (392)
T d1gc0a_ 57 SNPTLNLLEAR----MASLEGGE---------AGLALASGMGAITSTLWTLLR-----------PGDEVLLGNTLYGCTF 112 (392)
T ss_dssp CCHHHHHHHHH----HHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSCCSHHH
T ss_pred CChHHHHHHHH----HHHHhCCc---------ceeehhhHHHHHHHHHHhhcc-----------CCCeeecccccchhhh
Confidence 45666666654 78887754 467888888777666655433 6777888877776655
Q ss_pred HHHH----HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAAQ----IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~~----~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..+. ..|+ ++..++. .|+++++++++++++ +|.+..++|+++.+.||++|+++||++|+.
T Consensus 113 ~l~~~~~~~~Gi---~~~~~d~-------~d~~~~~~ai~~~t~------lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~ 176 (392)
T d1gc0a_ 113 AFLHHGIGEFGV---KLRHVDM-------ADLQALEAAMTPATR------VIYFESPANPNMHMADIAGVAKIARKHGAT 176 (392)
T ss_dssp HHHHHTGGGGTC---EEEEECT-------TCHHHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHHHHHHGGGTCE
T ss_pred hhhhhhhccCCc---ccccCCc-------cCHHHHHHhCCCCCe------EEEecccccceeeecchHHHHHHHHhcCCE
Confidence 5443 4577 7877753 388999999987654 899999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||.+++.+.+.-| +.. +||.+.-|..|++++.- -.|++..+++......+.. +..
T Consensus 177 ~vvDnT~atP~~~~P-l~~------GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~----~~~---------- 235 (392)
T d1gc0a_ 177 VVVDNTYCTPYLQRP-LEL------GADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG----LKD---------- 235 (392)
T ss_dssp EEEECTTTHHHHCCG-GGG------TCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH----HHH----------
T ss_pred EEEecCccCccccCh-HHh------CCCEEEEecceeecCCcccccccccchhHHHHHHHHHH----HHH----------
Confidence 999999987766443 222 89999999999998543 3566666654332111100 000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
..|--..+..+|..++ |.+-+..++++..++|..+.+.|+++|.++-+
T Consensus 236 ------~~G~~~~p~da~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V 283 (392)
T d1gc0a_ 236 ------MTGAVLSPHDAALLMR--GIKTLNLRMDRHCANAQVLAEFLARQPQVELI 283 (392)
T ss_dssp ------HTCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred ------ccCCcCChhhHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 0111234567777776 56888999999999999999999999988744
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.68 E-value=6.7e-16 Score=150.95 Aligned_cols=328 Identities=13% Similarity=0.040 Sum_probs=209.0
Q ss_pred HHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCC
Q 038818 93 MLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISR 172 (486)
Q Consensus 93 ~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~ 172 (486)
.+...+... .+..||...++|++ +++.+|.+ .++++++||.|+..|+.+.... ..++
T Consensus 17 ~v~~~l~~~--~~~~G~~v~~fE~~----~~~~~g~k---------~ai~~~Sgt~Al~~al~al~~~--------~~~~ 73 (371)
T d2fnua1 17 AVLEVLNSK--QLTQGKRSLLFEEA----LCEFLGVK---------HALVFNSATSALLTLYRNFSEF--------SADR 73 (371)
T ss_dssp HHHHHHTSS--CCSSSHHHHHHHHH----HHHHHTCS---------EEEEESCHHHHHHHHHHHSSCC--------CTTS
T ss_pred HHHHHHcCC--CccCCHHHHHHHHH----HHHHHCcC---------eEEEEecHHHHHHHHHHHhccc--------CCCC
Confidence 344444432 45578888888865 67777775 3688999999998887765321 1134
Q ss_pred eEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHH
Q 038818 173 LVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPL 252 (486)
Q Consensus 173 ~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I 252 (486)
..|+++..++.+...++...|+ +++.++++++ ..++.+++++.+.+.+ .+|+++ +..|...++++|
T Consensus 74 ~eVi~p~~t~~a~~~ai~~~G~---~pv~vDi~~~--~~~~~~~~~~~~~~~t------~avi~v---h~~G~~~~~~~i 139 (371)
T d2fnua1 74 NEIITTPISFVATANMLLESGY---TPVFAGIKND--GNIDELALEKLINERT------KAIVSV---DYAGKSVEVESV 139 (371)
T ss_dssp CEEEECSSSCTHHHHHHHHTTC---EEEECCBCTT--SSBCGGGSGGGCCTTE------EEEEEE---CGGGCCCCHHHH
T ss_pred CeeecccccccccceeeeccCc---cccccccccc--ccccchhhhhhccchh------hccccc---cccccccccccc
Confidence 5799999999999999999999 9999999874 3667788877665543 355555 468999999999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
.++|+++|++++.|+|++-+......... ....+..+++.+.|.+.+. +.|++++++++...+.............
T Consensus 140 ~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G---~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~ 215 (371)
T d2fnua1 140 QKLCKKHSLSFLSDSSHALGSEYQNKKVG---GFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFRSHGMLKKD 215 (371)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEETTEETT---SSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTTEEESS
T ss_pred cccccccchhhccchhhccCceeccccCC---ccccccccccccccccccc-cceEEEeechhhhhhccccccccccccc
Confidence 99999999999999999776543322211 1234567788889998764 5688888887665543321111100000
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----CeeEEEEE
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----NFAVVCFR 407 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----~~~~v~f~ 407 (486)
...... ..+....+..-+.+...+..+ +.+.+.+++..+++.++.+.|...+++.+..+. ....+.+.
T Consensus 216 ---~~~~~~--~~~G~n~r~sel~Aaigl~qL--~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 288 (371)
T d2fnua1 216 ---FFEGEV--KSIGHNFRLNEIQSALGLSQL--KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPIL 288 (371)
T ss_dssp ---SSCEEE--SSCCCBCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEE
T ss_pred ---cccccc--ccccccccccchhhhhhhhhh--hhccchhhhhhhhhhhhccccccccccccccccccccccccccccc
Confidence 000000 011122233444444444433 677888999999999999999999888875432 12233333
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeee-eE----------C-C---------EeEEEEEecCCCCcHH
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHG-MV----------A-G---------IYFIRFAVGATLTEDR 466 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~----------~-~---------~~~lR~~~~~~~tt~~ 466 (486)
+.... ......+.+.|.++|+-.-... .+ . + ...+.+= +++..+++
T Consensus 289 ~~~~~------------~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP-~~~~lt~~ 355 (371)
T d2fnua1 289 MHQKF------------FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLP-CHANLNLE 355 (371)
T ss_dssp ECGGG------------GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEEC-CCTTCCHH
T ss_pred ccccc------------hhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECc-CCCCCCHH
Confidence 43210 1112356777777776311000 00 0 0 1234443 57889999
Q ss_pred HHHHHHHHHHHHHHH
Q 038818 467 HVIAAWKVVQEKLDG 481 (486)
Q Consensus 467 did~~i~~l~~~~~~ 481 (486)
|++++++.|.+..+.
T Consensus 356 di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 356 SVQNIAHSVLKTFES 370 (371)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999988764
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.68 E-value=2.3e-17 Score=160.70 Aligned_cols=340 Identities=11% Similarity=-0.005 Sum_probs=182.1
Q ss_pred cceecCCCCCHHHHHHHHHHhhc-CCC---ccccc---cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchH
Q 038818 76 YFAYFPSSGSIAGFLGEMLSSGF-NVV---GFNWM---SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCE 148 (486)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~-n~~---~~~~~---~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~ 148 (486)
-+.|-|+|...|..+.+.+...+ |-+ ..... .++.+.++.+++++.++++++.+++. .+++++|+++
T Consensus 4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~------~i~~~~gt~~ 77 (360)
T d1w23a_ 4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDY------QILFLQGGAS 77 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHHH
T ss_pred eeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCC------EEEEeCCcHH
Confidence 45677777766666666665543 211 11111 36778889999999999999998763 5677777766
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH--HHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHH
Q 038818 149 AILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA--LQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQ 226 (486)
Q Consensus 149 a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~ 226 (486)
+++.+....... ++.++++....|++ +...+...+. .++.+...... ..+++.++..+..
T Consensus 78 ~~~~~~~~~~~~----------~~~~v~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~--- 139 (360)
T d1w23a_ 78 LQFTMLPMNLLT----------KGTIGNYVLTGSWSEKALKEAKLLGE---THIAASTKANS--YQSIPDFSEFQLN--- 139 (360)
T ss_dssp HHHHHHHHHHCC----------TTCEEEEEECSHHHHHHHHHHHTTSE---EEEEEECGGGT--SCSCCCGGGCCCC---
T ss_pred HHHHHHHhhhcc----------cCcccceeeccchhhhhHHHHHHhhh---cceeecccccc--ccchhhhhhcccc---
Confidence 665443332211 33344433334433 3334444454 44444433211 2233333332211
Q ss_pred CCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcc
Q 038818 227 AGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDC 306 (486)
Q Consensus 227 ~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~ 306 (486)
+.+++.+|.+|.+.|+++|+++|+++|+.++|||+++.+....+- .. + ++|+.+++.||++ |.+.
T Consensus 140 -------~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~-~~----~-~vd~~~~~~~k~~--~~~~ 204 (360)
T d1w23a_ 140 -------ENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKV-NQ----F-GMIYAGAQKNLGP--SGVT 204 (360)
T ss_dssp -------TTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCG-GG----C-SEEEEETTTTTSC--TTCE
T ss_pred -------cccceeEecCCccccceeeeeccccceeeEEeecccccccccccc-cc----c-cceEEeecccccc--CCcc
Confidence 223456677899999999999999999999999999887765542 11 1 6778777777754 4445
Q ss_pred eEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCc--hHHHHHHHH-hchHHHHHHHHHHHHHHHHH
Q 038818 307 CCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRA--LKLWLVLRS-FGVANLRNFLRSHVRMAQLF 383 (486)
Q Consensus 307 g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~--l~~~~~l~~-~g~~g~~~~~~~~~~~a~~l 383 (486)
|+++.+.... . .....+.+..... ...+.......... ......+.. ....+.....++....+...
T Consensus 205 ~~~~~~~~~~-~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (360)
T d1w23a_ 205 VVIVKKDLLN-T-KVEQVPTMLQYAT--------HIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKII 274 (360)
T ss_dssp EEEEEHHHHC-S-CCTTCCGGGCHHH--------HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred eeeEechhhh-c-ccccCCcchhhhh--------hhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 5555443211 0 0011111111000 00000000001111 111111111 11122233344444444445
Q ss_pred HHHHhCCCCeEEe-cCC--C-eeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEec
Q 038818 384 QELVGGDNRFEIV-APR--N-FAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVG 459 (486)
Q Consensus 384 ~~~L~~~~~~~~~-~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~ 459 (486)
.........+... ..+ + ..+++|.+.. ....+.+...+.++|+....+. ...+.+|+++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~--------------~~~~~~~~~~l~~~GI~~~~G~--~~~ggiRiS~~ 338 (360)
T d1w23a_ 275 YDTIDESNGFYVGHAEKGSRSLMNVTFNLRN--------------EELNQQFLAKAKEQGFVGLNGH--RSVGGCRASIY 338 (360)
T ss_dssp HHHHHTTTTSSEESSCGGGBCSSEEEEECSS--------------HHHHHHHHHHHHHTTEESCBCC--TTTCSEEEECC
T ss_pred HHHHhhcccccccCCChhhcceeEEEEEcCC--------------CccHHHHHHHHHHCCCeeeeCC--CccCcEEEEee
Confidence 4444443333332 222 2 3478998853 3445677788888887533321 12234899984
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~ 481 (486)
..+|.|||++|++.|++..+.
T Consensus 339 -~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 339 -NAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp -TTSCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHhc
Confidence 466888999999999987653
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.2e-14 Score=138.25 Aligned_cols=289 Identities=15% Similarity=0.147 Sum_probs=194.5
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. +++|-|.+ .++++++|..|+..++.+... +++.|+++...+....
T Consensus 48 ~nPt~~~le~~----la~LEgg~---------~a~~~sSGMaAi~~~l~~l~~-----------~gd~vv~~~~~yg~t~ 103 (384)
T d1cs1a_ 48 GNPTRDVVQRA----LAELEGGA---------GAVLTNTGMSAIHLVTTVFLK-----------PGDLLVAPHDCYGGSY 103 (384)
T ss_dssp CCHHHHHHHHH----HHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHH
T ss_pred CCHHHHHHHHH----HHHHhCCC---------ceEEecChHHHHHHHHhhccc-----------ccceecccccccchhh
Confidence 45666677755 67777653 468888888777666655433 6778888877776644
Q ss_pred HHH----HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAA----QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~----~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..+ ...|+ .+..+. ..|.+++++++.++++ +|.+..++||+..+-||++|+++|+++|+.
T Consensus 104 ~~~~~~~~~~g~---~~~~~d-------~~d~~~~~~~~~~~t~------~v~~EspsNP~l~v~Di~~i~~ia~~~g~~ 167 (384)
T d1cs1a_ 104 RLFDSLAKRGCY---RVLFVD-------QGDEQALRAALAEKPK------LVLVESPSNPLLRVVDIAKICHLAREVGAV 167 (384)
T ss_dssp HHHHHHHTTTSC---EEEEEC-------TTCHHHHHHHHHTCCS------EEEEECSCTTTCCCCCHHHHHHHHHHTTCE
T ss_pred hhhhhhhccccc---cccccc-------CCCHHHHHhhcccccc------EEEEeccccccceeccHHHHhhhhhhcCcE
Confidence 333 33344 555553 3478999998887654 899999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||.+++.+.+.-| +.. +||.+.-|..|++++.- -.|+++.+++........ ....
T Consensus 168 ~vVDNT~atP~~~~P-l~~------GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~-~~~~------------- 226 (384)
T d1cs1a_ 168 SVVDNTFLSPALQNP-LAL------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW-WANN------------- 226 (384)
T ss_dssp EEEECTTTCTTTCCG-GGG------TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH-HHHH-------------
T ss_pred EEEeccccCcccccc-ccc------CCCEEEEccccccccCCCcccccccCCchhhhhhhhh-hhhh-------------
Confidence 999999977665444 222 89999999999998554 366677766654332110 0000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~ 403 (486)
.+-...+..+|+.++ |.+-+.-++++..++|..+.+.|+++|.++-+.-| ..++
T Consensus 227 -------~G~~~~p~~a~ll~r--gL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~ 297 (384)
T d1cs1a_ 227 -------IGVTGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAM 297 (384)
T ss_dssp -------HTCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred -------hhhccccccHHHHhh--ccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcce
Confidence 011234566777776 56888999999999999999999999998654322 1567
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHHh--c----Cc---EEEeeeeE--C------------CEeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESINA--S----GQ---LYVSHGMV--A------------GIYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~----g~---~~~~~~~~--~------------~~~~lR~~~~~ 460 (486)
++|.+.+. .+...++.+.|.- . |. ++..+... . ..+.+|++++-
T Consensus 298 ~sf~l~~~-------------~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl 364 (384)
T d1cs1a_ 298 LSFELDGD-------------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI 364 (384)
T ss_dssp EEEEESSC-------------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS
T ss_pred eEEeecch-------------HHHHHHHHHhCCcceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc
Confidence 88887653 2333455554421 0 10 11111100 0 23579999952
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~ 483 (486)
||+|.+++.|++.++.+.
T Consensus 365 -----Ed~eDLi~Dl~~AL~aa~ 382 (384)
T d1cs1a_ 365 -----EDGEDLIADLENGFRAAN 382 (384)
T ss_dssp -----SCHHHHHHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHHHHHHhc
Confidence 367788888888776543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=7.7e-14 Score=134.01 Aligned_cols=298 Identities=12% Similarity=0.007 Sum_probs=184.3
Q ss_pred HHHHHHHHhhcCCCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccc
Q 038818 88 GFLGEMLSSGFNVVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGR 167 (486)
Q Consensus 88 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 167 (486)
..+.+.+...++.....|...++..++.+.+.+|+.+. +.+++ ++++|+|+++++...+.
T Consensus 35 ~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~d-------~I~it~G~~~~l~~l~~------------ 94 (334)
T d2f8ja1 35 EDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLSKN-------NVSVGNGADEIIYVMML------------ 94 (334)
T ss_dssp HHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCCGG-------GEEEEEHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCCcc-------eEEecCcchhHHHHHhh------------
Confidence 34445555556655554444555667777777666442 34443 68899988877654322
Q ss_pred cCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC
Q 038818 168 ENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD 247 (486)
Q Consensus 168 ~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id 247 (486)
..+.|++...++..+..+++.+|+ +++.||++++. ..+- +. ...+.+++++.++|++|.+-
T Consensus 95 ---~~d~v~i~~P~y~~~~~~~~~~g~---~~v~v~~~~~~--~~~~-----~~------~~~~~~l~l~nP~NPtG~~~ 155 (334)
T d2f8ja1 95 ---MFDRSVFFPPTYSCYRIFAKAVGA---KFLEVPLTKDL--RIPE-----VN------VGEGDVVFIPNPNNPTGHVF 155 (334)
T ss_dssp ---HSSEEEECSSCCHHHHHHHHHHTC---CEEECCCCTTS--CCCC-----CC------CCTTEEEEEESSCTTTCCCC
T ss_pred ---hccccccccccccccccchhccCC---ccccccccccc--cccc-----cc------cccceEEEecccccccceee
Confidence 123467788899999999999999 99999998632 3321 01 11234678889999999999
Q ss_pred CchHHHHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcc
Q 038818 248 PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPE 326 (486)
Q Consensus 248 pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~ 326 (486)
+.++|.+++ ++++++++|.+|......... .. ... ..--.++.++.|.++.| ..+|+++.. +............
T Consensus 156 s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~-~~-~~~-~~~~i~~~S~SK~~~~~G~R~G~~~~~-~~~i~~l~~~~~~ 230 (334)
T d2f8ja1 156 EREEIERIL-KTGAFVALDEAYYEFHGESYV-DF-LKK-YENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLP 230 (334)
T ss_dssp CHHHHHHHH-TTTCEEEEECTTGGGTCCCCG-GG-GGT-CSSEEEEEESTTTSSCTTTCEEEEEEC-HHHHHHHHHHSCT
T ss_pred cHHHhhccc-cceeEEeecccchhhcccccc-cc-ccc-CceEEEEecCccccchhhhhhhhcccc-hHHHHHHHHhhcc
Confidence 988888765 578999999988543222111 11 111 11225567889988755 578887774 4333322111100
Q ss_pred cccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEE
Q 038818 327 FLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCF 406 (486)
Q Consensus 327 y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f 406 (486)
+ ..+ ......+...+. ..+.+++..+...+.++++.+.|+++ |+++. ++..+.+.+
T Consensus 231 ~-------------------~~s-~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~ 286 (334)
T d2f8ja1 231 F-------------------NVS-YVSQMFAKVALD--HREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFV 286 (334)
T ss_dssp T-------------------CSC-HHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHHH-TCEEC-CCCSSEEEE
T ss_pred c-------------------ccc-hhhhhhcccccc--cccchhhHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEE
Confidence 0 001 011111222222 35667778888888899999999988 78876 556554444
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHH
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQE 477 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~ 477 (486)
.+. ....+++.+.|.++|++ +.+ + .+++|+++. +.+|+++++++|++
T Consensus 287 ~~~---------------~~~~~~~~~~L~~~GI~-vr~--~--~~~vRis~g----~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 287 FME---------------KEEKERLLEHLRTKNVA-VRS--F--REGVRITIG----KREENDMILRELEV 333 (334)
T ss_dssp ECC---------------HHHHHHHHHHHHHTTEE-CEE--E--TTEEEEECC----CHHHHHHHHHHHHH
T ss_pred ECC---------------CCCHHHHHHHHHHCCCE-ECC--C--CCeEEEEcC----CHHHHHHHHHHHhc
Confidence 433 12345778888888874 332 2 358999984 45588999998875
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.62 E-value=6.2e-14 Score=135.55 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=188.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. ++.|-|.+ ..+++++|..|+..++.+... +++.|+++...+....
T Consensus 65 ~nPt~~~LE~~----la~LEgg~---------~a~~~sSGMaAi~~~l~~l~~-----------~Gd~iv~~~~~Yg~t~ 120 (398)
T d1qgna_ 65 GNPTTVVLEEK----ISALEGAE---------STLLMASGMCASTVMLLALVP-----------AGGHIVTTTDCYRKTR 120 (398)
T ss_dssp CCHHHHHHHHH----HHHHHTCS---------EEEEESCHHHHHHHHHHHHSC-----------SSCEEEEETTSCHHHH
T ss_pred CChHHHHHHHH----HHHHhCCc---------eEEEecCcchHHHHHHhhccc-----------ccccccccccccchhh
Confidence 46666667655 67776653 468888988887666655432 6777888877776644
Q ss_pred HH----HHHcCCCCCCeEEEecCCCCCcccCHHHHHHHH-HHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCc
Q 038818 187 KA----AQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAI-DLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSI 261 (486)
Q Consensus 187 ~a----~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l-~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~ 261 (486)
.. ...+|+ ++..++. .|.++.++.+ .++ +.+|.+..++|++..+-||++|+++|+++|+
T Consensus 121 ~l~~~~~~~~gi---~~~~~~~-------~~~~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~ 184 (398)
T d1qgna_ 121 IFIETILPKMGI---TATVIDP-------ADVGALELALNQKK------VNLFFTESPTNPFLRCVDIELVSKLCHEKGA 184 (398)
T ss_dssp HHHHHTGGGGTC---EEEEECS-------SCHHHHHHHHHHSC------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTC
T ss_pred hhhccccccccc---ccccccc-------cchhhhhhhhcccc------ceEEEccCccccccccchHHHHHHHHhhcCC
Confidence 43 445577 7776652 2444444433 333 3489999999999999999999999999999
Q ss_pred eEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc-ceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 262 WVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD-CCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~-~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
.++||.+++.+...-| +. .+||.+.-|..|++++.-. .|..++.++........ +..
T Consensus 185 ~~vVDnT~atP~~~~P-l~------~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~----~~~----------- 242 (398)
T d1qgna_ 185 LVCIDGTFATPLNQKA-LA------LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN----LHH----------- 242 (398)
T ss_dssp EEEEECTTTCTTTCCT-TT------TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH----HHH-----------
T ss_pred EEEecceeeccccCCc-hh------hCCCEEEEechhhcCcccceeehhhcchhhhhhhhhh----hcc-----------
Confidence 9999999977665443 22 1799999999999996643 23344555544332211 000
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-ecCC----------------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEI-VAPR----------------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~~~~----------------~~~~ 403 (486)
..|--..+..+|..++ |.+-+.-++++..++|..+.+.|+++|.++- ..|. ..++
T Consensus 243 ------~~G~~l~p~~a~ll~r--gl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~ 314 (398)
T d1qgna_ 243 ------ILGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGA 314 (398)
T ss_dssp ------HHCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSE
T ss_pred ------cCCCcCCHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCce
Confidence 0111235566777776 5688899999999999999999999999874 3331 1567
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCc-------EEEeee-----eE-------C--CEeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQ-------LYVSHG-----MV-------A--GIYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~-------~~~~~~-----~~-------~--~~~~lR~~~~~ 460 (486)
++|..... .+...++.+.|. ..+. ++..+. .. . ..+.+|+|++-
T Consensus 315 ~sf~~~g~-------------~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl 381 (398)
T d1qgna_ 315 VSFEVDGD-------------LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV 381 (398)
T ss_dssp EEEEESSC-------------HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS
T ss_pred eeeeecCC-------------HHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc
Confidence 88877543 233456666542 1121 111111 00 0 24689999952
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l 482 (486)
||+|.+++.|++.++.|
T Consensus 382 -----Ed~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 382 -----EDFDDLKADILQALDSI 398 (398)
T ss_dssp -----SCHHHHHHHHHHHHHHC
T ss_pred -----CCHHHHHHHHHHHHhcC
Confidence 26777888888877653
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.61 E-value=2e-14 Score=138.50 Aligned_cols=286 Identities=15% Similarity=0.171 Sum_probs=191.9
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. ++.+-|.+ .++++++|..|+ .++..... +++.|+++...|....
T Consensus 47 ~nPt~~~le~~----la~LE~~~---------~a~~fsSGMaAi-sall~ll~-----------~Gd~vv~~~~~Yg~t~ 101 (380)
T d1ibja_ 47 GNPTRDALESL----LAKLDKAD---------RAFCFTSGMAAL-SAVTHLIK-----------NGEEIVAGDDVYGGSD 101 (380)
T ss_dssp CCHHHHHHHHH----HHHHHTCS---------EEEEESSHHHHH-HHHHTTSC-----------TTCEEEEESSCCHHHH
T ss_pred CChHHHHHHHH----HHHHcCCc---------eEEehhhHHHHH-HHHHHhhC-----------CCCEEEEEeccccccc
Confidence 45666666654 67776653 467888887665 45443221 6677888888887766
Q ss_pred HHHHH----cCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 KAAQI----AGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ~a~~~----~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
..++. .|+ .+..++. .|++++++++++++ .+|.+..++|++..+-||++|+++|+++|++
T Consensus 102 ~l~~~~~~~~gi---~~~~~d~-------~~~~~~~~ai~~~t------~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~ 165 (380)
T d1ibja_ 102 RLLSQVVPRSGV---VVKRVNT-------TKLDEVAAAIGPQT------KLVWLESPTNPRQQISDIRKISEMAHAQGAL 165 (380)
T ss_dssp HHHHHTSGGGTC---EEEEECT-------TSHHHHHHHCCSSE------EEEEECSSCTTTCCCCCHHHHHHHHHTTTCE
T ss_pred chhhhhhccccc---cccccCc-------chHHHHHHHhccCc------cEEEeccccccccccccHHHHHHHHHHcCCe
Confidence 65544 466 6666643 37889998886654 4899999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCccC
Q 038818 263 VHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVD 340 (486)
Q Consensus 263 lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 340 (486)
++||.+++.++...| +.. +||.+.-|..|++++.- ..|.+..+++....+.... ..
T Consensus 166 ~vVDnT~atP~~~~P-l~~------GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~-~~-------------- 223 (380)
T d1ibja_ 166 VLVDNSIMSPVLSRP-LEL------GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL-QN-------------- 223 (380)
T ss_dssp EEEECTTTCTTTCCG-GGT------TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH-HH--------------
T ss_pred EEeeccccccccccc-ccc------CCCEEEecccceeccccCccccccccchhhHHHHHHhh-cc--------------
Confidence 999999987665444 221 79999999999999653 3666667766543322110 00
Q ss_pred CCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC-----C-----------CeeE
Q 038818 341 YKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP-----R-----------NFAV 403 (486)
Q Consensus 341 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~-----~-----------~~~~ 403 (486)
..+....+..+|..++ |.+-+..++++..++|..+++.|+++|.++-+ .| | ..++
T Consensus 224 ------~~G~~l~p~~a~ll~r--gl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~ 295 (380)
T d1ibja_ 224 ------SEGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSV 295 (380)
T ss_dssp ------HTTCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSE
T ss_pred ------ccCCcCCHHHHHHHHh--cchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCcccccccccccccccc
Confidence 1122235567777777 56888999999999999999999999988643 32 1 2356
Q ss_pred EEEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCc-------EEEeee-----eE-------C--CEeEEEEEecC
Q 038818 404 VCFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQ-------LYVSHG-----MV-------A--GIYFIRFAVGA 460 (486)
Q Consensus 404 v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~-------~~~~~~-----~~-------~--~~~~lR~~~~~ 460 (486)
++|.... .+...++.+.|. ..+. ++..+. .+ . ..+.+|+|++-
T Consensus 296 ~s~~~~~--------------~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl 361 (380)
T d1ibja_ 296 FSFITGS--------------VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI 361 (380)
T ss_dssp EEEECSC--------------HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS
T ss_pred ccccccH--------------HHHHHHHHHhCCcCeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc
Confidence 6664432 334456666542 1111 111111 00 0 14579999952
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l 482 (486)
||+|.+++.|++.++.+
T Consensus 362 -----E~~eDLi~Dl~qAl~~l 378 (380)
T d1ibja_ 362 -----EDVDDLISDLDIAFKTF 378 (380)
T ss_dssp -----SCHHHHHHHHHHHHHSC
T ss_pred -----CCHHHHHHHHHHHHHhc
Confidence 36788888888887654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.59 E-value=1.8e-13 Score=132.47 Aligned_cols=291 Identities=17% Similarity=0.194 Sum_probs=194.5
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHH-
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSAL- 185 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~- 185 (486)
..|....+|+. ++.|-|.+ .++.+++|..|+..++.+... +++.|+++...+...
T Consensus 57 ~nPT~~~le~~----la~LEg~~---------~a~~~sSGmaAi~~~~l~l~~-----------~gd~vv~~~~~yg~t~ 112 (394)
T d1e5ea_ 57 GNPTVSNLEGK----IAFLEKTE---------ACVATSSGMGAIAATVLTILK-----------AGDHLISDECLYGCTH 112 (394)
T ss_dssp CCHHHHHHHHH----HHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHH
T ss_pred CCHHHHHHHHH----HHHHhCCc---------ceeeeccchHHHHHHHHhhcc-----------cccccccccceeehhh
Confidence 45666666654 67777754 467888888777666554432 677888887777553
Q ss_pred ---HHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHH-HhCc
Q 038818 186 ---QKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAK-RYSI 261 (486)
Q Consensus 186 ---~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~-~~g~ 261 (486)
.+.....|+ .+..++.. |+++++++|+++++ +|.+..++|++..+.|+++++++++ ++|+
T Consensus 113 ~~~~~~~~~~gi---~~~~~d~~-------d~~~~~~~i~~~t~------lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~ 176 (394)
T d1e5ea_ 113 ALFEHALTKFGI---QVDFINTA-------IPGEVKKHMKPNTK------IVYFETPANPTLKIIDMERVCKDAHSQEGV 176 (394)
T ss_dssp HHHHTHHHHTTC---EEEEECTT-------STTHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHHHHHHHTSTTC
T ss_pred HhHHHHhhccce---eeeccCCC-------CHHHHHHhhccccc------EEEEeccCCcceeeehhhhhhhccccccCe
Confidence 344566788 88888643 66789998887654 8999999999999999999998665 5789
Q ss_pred eEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCcc
Q 038818 262 WVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVV 339 (486)
Q Consensus 262 ~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 339 (486)
.++||.+++.....-| +.. +||.+.-|..|++++.. -+|++..+++........ ++..
T Consensus 177 ~vvvDnT~atP~~~~P-l~~------GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~----~~~~--------- 236 (394)
T d1e5ea_ 177 LVIADNTFCSPMITNP-VDF------GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV----GIKD--------- 236 (394)
T ss_dssp EEEEECTTTCTTTCCG-GGG------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT----CCCC---------
T ss_pred EEEecCcccCcccCCc-hhc------CCCEEEechhhhcCCCcccccccccchhhHHHHHHHH----HHHH---------
Confidence 9999999977665443 222 89999999999998654 366666654433221111 0100
Q ss_pred CCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-cC-----C-----------Cee
Q 038818 340 DYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV-AP-----R-----------NFA 402 (486)
Q Consensus 340 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~-----~-----------~~~ 402 (486)
..|-...+..+|..++ |.+-+.-++++..++|..+.++|+++|.++-+ .| | ..+
T Consensus 237 -------~~G~~lsp~~a~ll~r--gl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~ 307 (394)
T d1e5ea_ 237 -------ITGSVISPHDAWLITR--GLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGS 307 (394)
T ss_dssp -------CCCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCS
T ss_pred -------hhCCCCChHHHHHHHh--hchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCC
Confidence 0122235567777776 56888999999999999999999999998644 32 1 256
Q ss_pred EEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCc-------EEEeeee-----E-------C--CEeEEEEEec
Q 038818 403 VVCFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQ-------LYVSHGM-----V-------A--GIYFIRFAVG 459 (486)
Q Consensus 403 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~-------~~~~~~~-----~-------~--~~~~lR~~~~ 459 (486)
+++|.+... .+...++.+.|. ..+. ++..+.. . . ..+.+|+|++
T Consensus 308 ~~sf~~~~~-------------~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVG 374 (394)
T d1e5ea_ 308 MITFILKSG-------------FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG 374 (394)
T ss_dssp EEEEEETTH-------------HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred eeeeeccCC-------------HHHHHHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEec
Confidence 788876532 233345555442 1111 1111110 0 0 1357999995
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhh
Q 038818 460 ATLTEDRHVIAAWKVVQEKLDGILA 484 (486)
Q Consensus 460 ~~~tt~~did~~i~~l~~~~~~l~~ 484 (486)
- ||+|.+++.|++.++.+++
T Consensus 375 l-----Ed~eDLi~Dl~qAl~~l~~ 394 (394)
T d1e5ea_ 375 I-----EDADELIADFKQGLDALLR 394 (394)
T ss_dssp S-----SCHHHHHHHHHHHHHHHHC
T ss_pred c-----CCHHHHHHHHHHHHHHhhC
Confidence 2 3788888888888887764
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.59 E-value=1.5e-14 Score=142.67 Aligned_cols=327 Identities=10% Similarity=0.010 Sum_probs=190.0
Q ss_pred HHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHH--HHHHHHHHHHHHHHH
Q 038818 88 GFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEA--ILCTLAAARDQILNE 164 (486)
Q Consensus 88 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a--~~~al~~a~~~~~~~ 164 (486)
..+.++.....+.. ...|....+..++.+.+.+++.+..+..... ..+++.+++.+ ...++......++
T Consensus 49 ~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~------~~i~~~~~~~~~g~~~~~~~~~~~l~-- 120 (401)
T d7aata_ 49 NCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKS------GRYVTVQGISGTGSLRVGANFLQRFF-- 120 (401)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT------TCEEEEEEEHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCc------CceEEeccchHHHHHHHHHHhhHhhc--
Confidence 44555555544333 3457777778899999999998877643221 22333332222 2222322222221
Q ss_pred ccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCcccc
Q 038818 165 IGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAIT 244 (486)
Q Consensus 165 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G 244 (486)
.+++.|++++..+......++..|. +++.+|+..++.+..|.+.+.+.+.... ....+++.+.++||||
T Consensus 121 -----~pGd~Vlv~~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iii~~p~NPTG 189 (401)
T d7aata_ 121 -----KFSRDVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPKTCSLDFTGAMEDISKIP---EKSIILLHACAHNPTG 189 (401)
T ss_dssp -----TTCCEEEEEESCCTTHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTSC---TTCEEEEESSSCTTTC
T ss_pred -----CCCceEEEecCCCcchhhHHHHcCC---eEEEEeccccccccccHHHHHHHHhcCC---CceEEEEecCCCCCcc
Confidence 1788889999999999999999999 9999998766678999999988876432 2356788899999999
Q ss_pred ccC---CchHHHHHHHHhCceEEeeccccchhccCccchh-----hhcCCCCCCceeeccccccC-CCCcceEEEeeCch
Q 038818 245 TVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRH-----FIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPN 315 (486)
Q Consensus 245 ~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~-----~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~ 315 (486)
.+- .+++|+++|++|+++++.|.+|............ ........ .+..+..|.++ ...-+|++......
T Consensus 190 ~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~s~sk~~~~~G~RiG~~~~~~~~ 268 (401)
T d7aata_ 190 VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV-VLSQSYAKNMGLYGERAGAFTVICRD 268 (401)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCC-EEEEECTTTSCCGGGCEEEEEEECSS
T ss_pred ccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhccc-ceeEeccccceeeccccceeecchHH
Confidence 984 5789999999999999999999775542211110 00111111 23345566555 44568888876552
Q ss_pred HH--HHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--------chHHHHHHHHHHHHHHHHHHH
Q 038818 316 AL--IKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--------GVANLRNFLRSHVRMAQLFQE 385 (486)
Q Consensus 316 ~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--------g~~g~~~~~~~~~~~a~~l~~ 385 (486)
.- .+.... ....... ...+ ..++........+ ....++++.++..++++.+.+
T Consensus 269 ~~~~~~~~~~-~~~~~~~-------------~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 331 (401)
T d7aata_ 269 AEEAKRVESQ-LKILIRP-------------MYSN---PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVS 331 (401)
T ss_dssp HHHHHHHHHH-HHHHHHH-------------HHSS---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhhc-------------cccc---cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 110000 0000000 0000 0111111221111 123455666677778888888
Q ss_pred HHhCCCC---eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCC
Q 038818 386 LVGGDNR---FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATL 462 (486)
Q Consensus 386 ~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~ 462 (486)
.|+++.. +..+ +++.++++|. +.. .++.++|. .+.|+. +.++ .|+++. .
T Consensus 332 ~L~~~~~~~~~~~~-~~~~G~F~~~--~ls------------~e~~~~L~---~e~gV~-~~pg-------~Ris~a--~ 383 (401)
T d7aata_ 332 NLKKEGSSHNWQHI-TDQIGMFCFT--GLK------------PEQVERLT---KEFSIY-MTKD-------GRISVA--G 383 (401)
T ss_dssp HHHHTTCCSCCHHH-HHCCSSEEEC--CCC------------HHHHHHHH---HHHCEE-CCTT-------CEEEGG--G
T ss_pred HHHHhCCCCCcceE-CCCCeEEEec--CCC------------HHHHHHHH---HhCCEE-ECCC-------cEEEec--c
Confidence 8887631 2222 3455665552 211 23333332 345653 4332 499985 3
Q ss_pred CcHHHHHHHHHHHHHHH
Q 038818 463 TEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 463 tt~~did~~i~~l~~~~ 479 (486)
.++++|+++.++|.+++
T Consensus 384 ~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 384 VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45568999999998876
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.57 E-value=5.6e-14 Score=133.32 Aligned_cols=280 Identities=15% Similarity=0.163 Sum_probs=188.5
Q ss_pred HHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchH----HHHHHHHcCCC
Q 038818 120 DWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSA----LQKAAQIAGID 195 (486)
Q Consensus 120 ~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~~a~~~~G~g 195 (486)
+.++.+-|.+ .++++++|..|+..++..... +++.|+++...+.. +.+....+|+
T Consensus 5 ~~la~Leg~~---------~a~~~sSGMaAi~~~l~~ll~-----------~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi- 63 (331)
T d1pffa_ 5 GKIAKLEHAE---------ACAATASGMGAIAASVWTFLK-----------AGDHLISDDCLYGCTHALFEHQLRKFGV- 63 (331)
T ss_dssp HHHHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTHHHHTTC-
T ss_pred HHHHHHhCCC---------eEEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHHHHHHHHHhcCe-
Confidence 4577776653 468889988887666655433 66677788776654 3445667788
Q ss_pred CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHH-HHhCceEEeeccccchhc
Q 038818 196 PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIA-KRYSIWVHVDAAYAGSAC 274 (486)
Q Consensus 196 ~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~-~~~g~~lhvD~a~g~~~~ 274 (486)
++.+++.. |++.+++++++++ .+|.+..++|++..+.|++++++++ +++|+.++||.+++.+..
T Consensus 64 --~~~~~d~~-------d~~~~~~~i~~~t------~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~ 128 (331)
T d1pffa_ 64 --EVDFIDMA-------VPGNIEKHLKPNT------RIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL 128 (331)
T ss_dssp --EEEEECTT-------STTHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH
T ss_pred --EEEEeccc-------chhhHhhhccccc------ceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc
Confidence 88887643 7788998887654 4899999999999999999999985 678999999999987765
Q ss_pred cCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccCCCCC
Q 038818 275 ICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRF 352 (486)
Q Consensus 275 ~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~ 352 (486)
.-| +.. +||.+.-|..|++++.. -.|.+..+++........ . +.. ..+...
T Consensus 129 ~~p-l~~------GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~-~---~~~----------------~~G~~l 181 (331)
T d1pffa_ 129 TNP-LDL------GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-G---IKD----------------ITGAII 181 (331)
T ss_dssp CCG-GGG------TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-C---CCC----------------CCCCCC
T ss_pred ccc-ccc------CCCEEEecchhhcCCCCccccccccccccchhhhhhh-h---hhh----------------ccCCCC
Confidence 544 222 79999999999998643 346666554433221111 0 000 012233
Q ss_pred CchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EecC-----C-----------CeeEEEEEeecCCCCC
Q 038818 353 RALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFE-IVAP-----R-----------NFAVVCFRVLPSASGL 415 (486)
Q Consensus 353 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~-----~-----------~~~~v~f~~~~~~~~~ 415 (486)
.+..+|..++ |.+-+..++++..++|..+.+.|+++|.++ |..| | ..++++|.+..
T Consensus 182 ~p~~a~ll~r--gl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~----- 254 (331)
T d1pffa_ 182 SPHDAWLITR--GTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----- 254 (331)
T ss_dssp CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-----
T ss_pred CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc-----
Confidence 5567787777 668899999999999999999999999884 4333 1 24678887753
Q ss_pred CCCCCccchHHHHHHHHHHHHh--cCc-------EEEeeee--E----------C--CEeEEEEEecCCCCcHHHHHHHH
Q 038818 416 GDGKANEGANELNRKLLESINA--SGQ-------LYVSHGM--V----------A--GIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~l~~--~g~-------~~~~~~~--~----------~--~~~~lR~~~~~~~tt~~did~~i 472 (486)
.+...++.+.|.- .+. +...+.. + . ..+.+|++++- ||.|.++
T Consensus 255 ---------~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl-----E~~~DLi 320 (331)
T d1pffa_ 255 ---------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC-----ENVQDII 320 (331)
T ss_dssp ---------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS-----SCHHHHH
T ss_pred ---------HHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee-----CCHHHHH
Confidence 2334556665421 111 1111110 0 0 13579999952 3778888
Q ss_pred HHHHHHHHHHh
Q 038818 473 KVVQEKLDGIL 483 (486)
Q Consensus 473 ~~l~~~~~~l~ 483 (486)
+.|++.++.++
T Consensus 321 ~Dl~~AL~~il 331 (331)
T d1pffa_ 321 DDLKQALDLVL 331 (331)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhC
Confidence 88888877653
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=3.7e-13 Score=130.83 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=154.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. ++.|-|.+ .++++++|..|+..++..... +++.|+++...+....
T Consensus 56 ~nPT~~~LE~~----la~LE~~~---------~a~~~~SGmaAi~~~~~~l~~-----------~gd~il~~~~~Yg~t~ 111 (421)
T d2ctza1 56 MNPTVDVLEKR----LAALEGGK---------AALATASGHAAQFLALTTLAQ-----------AGDNIVSTPNLYGGTF 111 (421)
T ss_dssp BCHHHHHHHHH----HHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEECSCCCHHHH
T ss_pred CCHHHHHHHHH----HHHHhCCC---------eEEEecChHHHHHHHHHhhcc-----------cccceeecCCcCCchh
Confidence 45666666654 67776653 467888887776555554433 6778888888875543
Q ss_pred ----HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCce
Q 038818 187 ----KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIW 262 (486)
Q Consensus 187 ----~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~ 262 (486)
+.+...|+ ++..++.+ -+.+..++.+++++ .+|.+..++||+..+-||++|+++||++|+.
T Consensus 112 ~l~~~~~~~~gi---~~~~~d~~------~~~~~~~~~~~~~t------~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~ 176 (421)
T d2ctza1 112 NQFKVTLKRLGI---EVRFTSRE------ERPEEFLALTDEKT------RAWWVESIGNPALNIPDLEALAQAAREKGVA 176 (421)
T ss_dssp HHHHTHHHHTTC---EEEECCTT------CCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHhhccc---cceecccc------cCcchhccccCCCc------eEEEEcCCCcceeEecchHHHHHHHHhcCCc
Confidence 34556788 77766432 24555666666554 4899999999999999999999999999999
Q ss_pred EEeeccccc-hhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHH-----HhcCCcccccCccCC
Q 038818 263 VHVDAAYAG-SACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIK-----ALSTNPEFLRNKASD 334 (486)
Q Consensus 263 lhvD~a~g~-~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~-----~~~~~~~y~~~~~~~ 334 (486)
++||.+++. ..+.-| +.. +||.+.-|..|++++.- -+|++..+++..... .....+.|-.-....
T Consensus 177 ~vvDnT~a~tP~~~~P-l~~------GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 249 (421)
T d2ctza1 177 LIVDNTFGMGGYLLRP-LAW------GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTE 249 (421)
T ss_dssp EEEECGGGGGGTSCCG-GGG------TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHH
T ss_pred eEecccccccceeccc-ccc------CCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHH
Confidence 999999974 443333 322 89999999999999653 366666655422110 000000110000000
Q ss_pred CCCccCCC-----CccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Q 038818 335 SKQVVDYK-----DWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIV 396 (486)
Q Consensus 335 ~~~~~~~~-----~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 396 (486)
..+...+. ...-..|-...+..+|+.++ |.+-+.-++++..++|..+.+.|+++|.++-+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~r--gl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V 314 (421)
T d2ctza1 250 AFGELAFIVKARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWV 314 (421)
T ss_dssp HHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred HhccHHHHHHHHHHHHHhccCCCCHHHHHHHhc--CCcchhhHHHHHHHHHHHHHhhhccCCCeeEE
Confidence 00000000 00000122345567777776 56888999999999999999999999998543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.55 E-value=5.8e-14 Score=137.09 Aligned_cols=235 Identities=15% Similarity=0.044 Sum_probs=150.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
.||....+|+. +++.+|.+ .++++++||.|++.|+.+..-+ +++.|++|..++.+..
T Consensus 19 ~G~~~~~fE~~----~~~~~~~~---------~~~~~~SgT~Al~lal~~l~~~----------~gdeVi~p~~t~~a~~ 75 (374)
T d1o69a_ 19 LGEFVNRFEQS----VKDYSKSE---------NALALNSATAALHLALRVAGVK----------QDDIVLASSFTFIASV 75 (374)
T ss_dssp TTHHHHHHHHH----HHHHHCCS---------EEEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCGGGT
T ss_pred CCHHHHHHHHH----HHHHHCcC---------eEEEeCCHHHHHHHHHHHcCCC----------CcCEEEeCCcchHhhH
Confidence 37887888876 56677765 4689999999999888765221 6778999999999999
Q ss_pred HHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEee
Q 038818 187 KAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVD 266 (486)
Q Consensus 187 ~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD 266 (486)
.++..+|+ .++.+++|++ ...++++..+.. ..... .+.+|++++ ..|...++++|.++|+++|++++.|
T Consensus 76 ~~~~~~g~---~pv~~Di~~~-~~~~~~~~~~~~-~~~~~---~~~aii~~~---~~G~~~d~~~i~~~~~~~~i~vIED 144 (374)
T d1o69a_ 76 APICYLKA---KPVFIDCDET-YNIDVDLLKLAI-KECEK---KPKALILTH---LYGNAAKMDEIVEICKENDIVLIED 144 (374)
T ss_dssp HHHHHTTC---EEEEECBCTT-SSBCHHHHHHHH-HHCSS---CCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccc---eeEecccccc-cccccccccccc-hhccc---ccccccccc---cccchhhhHHHHHHhhccCcchhhh
Confidence 99999999 9999999863 234444443322 22111 133455544 4788999999999999999999999
Q ss_pred ccccchhccCccchhhhcCCCCCC--ceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCc
Q 038818 267 AAYAGSACICPEFRHFIDGIEGAD--SFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDW 344 (486)
Q Consensus 267 ~a~g~~~~~~~~~~~~~~~~~~aD--si~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 344 (486)
+|++.+...... .-| ...| .+++.+.|.+.+. +.|++++++++...+........... .....
T Consensus 145 ~a~a~g~~~~~~----~~G-~~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~~~~~~~~g~~~---------~~~~~ 209 (374)
T d1o69a_ 145 AAEALGSFYKNK----ALG-TFGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYSTQAREN---------CLHYE 209 (374)
T ss_dssp CTTCTTCEETTE----ETT-SSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTCCCS---------SSSCC
T ss_pred hhhhhcceECCe----ecC-CCCceEEEeccCccccccc-cceeehhhhHHHHHhhcccccccccc---------ccccc
Confidence 999765533221 111 1235 4455556888764 56888888887655433211100000 00000
Q ss_pred cccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC
Q 038818 345 QITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD 390 (486)
Q Consensus 345 ~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 390 (486)
....|-.++.-.+.+++-....+.+.+.+++..++++++.+.|.+.
T Consensus 210 ~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 210 HLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY 255 (374)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhcccc
Confidence 1112222222222333333334677888888899999999999875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.8e-13 Score=132.40 Aligned_cols=290 Identities=13% Similarity=0.129 Sum_probs=192.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. ++.|-|.+ .++++++|..|+..++.+... +++.|+++...|....
T Consensus 56 ~nPt~~~le~~----la~LEg~~---------~a~~~~SGMaAi~~~l~~l~~-----------~Gd~iv~~~~~Yg~T~ 111 (391)
T d1cl1a_ 56 GTLTHFSLQQA----MCELEGGA---------GCVLFPCGAAAVANSILAFIE-----------QGDHVLMTNTAYEPSQ 111 (391)
T ss_dssp CCHHHHHHHHH----HHHHHTCS---------EEEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTSCHHHH
T ss_pred CChhHHHHHHH----HHHHhCCc---------cEEEeccccceeeehhhcccC-----------CCCeEEEecccccchh
Confidence 45666666654 77776653 468888988777666655432 6677888888887655
Q ss_pred HHHH----HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHh--C
Q 038818 187 KAAQ----IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRY--S 260 (486)
Q Consensus 187 ~a~~----~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~--g 260 (486)
..++ ..|+ ++..++. .|.+++++++++++ .+|.+..++|++..+-||++|+++|+++ |
T Consensus 112 ~l~~~~l~~~Gi---~~~~~d~-------~d~~~~~~~i~~~t------~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g 175 (391)
T d1cl1a_ 112 DFCSKILSKLGV---TTSWFDP-------LIGADIVKHLQPNT------KIVFLESPGSITMEVHDVPAIVAAVRSVVPD 175 (391)
T ss_dssp HHHHHTGGGGTC---EEEEECT-------TCGGGGGGTCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHCTT
T ss_pred hhhhhccccccc---ccccccC-------cccccccccccccc------ceeeecccCcccccccccHHHHHHHHhccCC
Confidence 4443 4466 6776653 26678888877654 4899999999999999999999999875 9
Q ss_pred ceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCc--ceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 261 IWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLD--CCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 261 ~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~--~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
+.++||.+++.+...-| +.. +||.+..|..|++++.-. .|++..+.+ ...+..... +.
T Consensus 176 ~~~vVDnT~atP~~~~P-l~~------GaDivvhS~TKy~~GhsdvlgG~vv~~~~-~~~~~~~~~--~~---------- 235 (391)
T d1cl1a_ 176 AIIMIDNTWAAGVLFKA-LDF------GIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENA--YL---------- 235 (391)
T ss_dssp CEEEEECTTTTTTSSCG-GGG------TCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHH--HH----------
T ss_pred cEEEEeccccchhhhcc-ccc------ccceEEeecchhccccccccccceecccc-ccccchhhh--hc----------
Confidence 99999999987665443 222 899999999999996543 455544433 322221100 00
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC-----------------Ce
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR-----------------NF 401 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~ 401 (486)
.+-...+..+|..++ |.+-+.-+++++.++|..+.+.|+++|.++-+.-| ..
T Consensus 236 ---------~G~~~~p~~a~ll~r--gl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~g 304 (391)
T d1cl1a_ 236 ---------MGQMVDADTAYITSR--GLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSS 304 (391)
T ss_dssp ---------TTCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCC
T ss_pred ---------ccccCCchhhhhhhc--cchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCC
Confidence 111234566777766 56888899999999999999999999998765422 13
Q ss_pred eEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCc-------EEEeeee-----E--C-----CEeEEEEEecC
Q 038818 402 AVVCFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQ-------LYVSHGM-----V--A-----GIYFIRFAVGA 460 (486)
Q Consensus 402 ~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~-------~~~~~~~-----~--~-----~~~~lR~~~~~ 460 (486)
++++|.+..... .+...++.+.|. ..+. +++.+.. . . ..+.+|+|++-
T Consensus 305 g~~sf~l~~~~~-----------~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl 373 (391)
T d1cl1a_ 305 GLFSFVLKKKLN-----------NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL 373 (391)
T ss_dssp SEEEEEESSCCC-----------HHHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS
T ss_pred cceeeeecCCCC-----------HHHHHHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc
Confidence 577888765321 222334444331 1111 1121110 0 0 14579999952
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Q 038818 461 TLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 461 ~~tt~~did~~i~~l~~~~~~l~ 483 (486)
||+|.+++.|++.+.+++
T Consensus 374 -----Ed~eDLi~Dl~~AL~~i~ 391 (391)
T d1cl1a_ 374 -----EDVDDLIADLDAGFARIV 391 (391)
T ss_dssp -----SCHHHHHHHHHHHHHHTC
T ss_pred -----CCHHHHHHHHHHHHHhhC
Confidence 378888888888887653
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=4.7e-14 Score=138.86 Aligned_cols=328 Identities=12% Similarity=0.009 Sum_probs=188.6
Q ss_pred HHHHHHhhcC-CCccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHcccc
Q 038818 90 LGEMLSSGFN-VVGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRE 168 (486)
Q Consensus 90 ~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 168 (486)
+.++.....+ ...+.|....+..++.+.+.+|+.+..+..... .....+.+.+|+.+...++......
T Consensus 49 V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~-------- 117 (396)
T d2q7wa1 49 VKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIND---KRARTAQTPGGTGALRVAADFLAKN-------- 117 (396)
T ss_dssp HHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEESHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccc---cceeeeccchHHHHHHHHHHHHhhc--------
Confidence 4444444443 333467777788899999999998876642110 0013445666554443333322211
Q ss_pred CCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC-
Q 038818 169 NISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD- 247 (486)
Q Consensus 169 ~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id- 247 (486)
.+++.|++++..+......++..|. +++.+|...++++..+...+++.+... .....+++.+.++||||.+-
T Consensus 118 -~~gd~Vlvp~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~P~NPTG~~~s 190 (396)
T d2q7wa1 118 -TSVKRVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPT 190 (396)
T ss_dssp -SCCCEEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCC
T ss_pred -ccceEEEEecCCCccchHHHHHcCC---eeEecccccccccccccchHHHHHHHh---ccCcEEEEecCCcCCcCeecC
Confidence 1678888999999999999999999 999999876666677888887766543 23356788889999999984
Q ss_pred --CchHHHHHHHHhCceEEeeccccchhccCccchhh---hcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHh
Q 038818 248 --PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF---IDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKAL 321 (486)
Q Consensus 248 --pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~---~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~ 321 (486)
.+++|+++|++|+++++.|.+|.......+..... ......-..+..+..|.++ ....+|++.......-. ..
T Consensus 191 ~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~-~~ 269 (396)
T d2q7wa1 191 LEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSET-VD 269 (396)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHH-HH
T ss_pred HHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhHHHH-HH
Confidence 47799999999999999999997654321111111 1111122244455666665 44568888887652211 00
Q ss_pred cCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--------chHHHHHHHHHHHHHHHHHHHHHhCCC-C
Q 038818 322 STNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--------GVANLRNFLRSHVRMAQLFQELVGGDN-R 392 (486)
Q Consensus 322 ~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--------g~~g~~~~~~~~~~~a~~l~~~L~~~~-~ 392 (486)
........... ....+ ......++....+ ..+.++++.++..++++.+.+.|+++. .
T Consensus 270 ~~~~~~~~~~~-----------~~~~~---~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 335 (396)
T d2q7wa1 270 RAFSQMKAAIR-----------ANYSN---PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335 (396)
T ss_dssp HHHHHHHHHHH-----------TTTSS---CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCC
T ss_pred Hhhhhhhhhhh-----------ccccC---CCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00000000000 00000 1122222222222 234566667777788889999998762 1
Q ss_pred --eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHH
Q 038818 393 --FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIA 470 (486)
Q Consensus 393 --~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~ 470 (486)
+..+.+ ..++++|. +.. .+..++|. .+.|+. +.++ + |+++. ..++++|++
T Consensus 336 ~~~~~~~~-~~G~F~~~--~l~------------~e~~~~L~---~e~gV~-~~~g---~----Ri~~a--~l~~~~i~~ 387 (396)
T d2q7wa1 336 RDFSFIIK-QNGMFSFS--GLT------------KEQVLRLR---EEFGVY-AVAS---G----RVNVA--GMTPDNMAP 387 (396)
T ss_dssp SCCTHHHH-CCSSEEEC--CCC------------HHHHHHHH---HHHCEE-CCTT---C----EEEGG--GCCTTTHHH
T ss_pred CCcceecC-CCeEEEee--CCC------------HHHHHHHH---HhCCEE-ECCC---C----EEEec--CCCHHHHHH
Confidence 222223 34555542 211 22222322 245763 3332 1 89985 345568999
Q ss_pred HHHHHHHH
Q 038818 471 AWKVVQEK 478 (486)
Q Consensus 471 ~i~~l~~~ 478 (486)
+.++|.++
T Consensus 388 ~~~ai~~v 395 (396)
T d2q7wa1 388 LCEAIVAV 395 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=6.2e-14 Score=137.89 Aligned_cols=364 Identities=13% Similarity=0.069 Sum_probs=202.3
Q ss_pred CHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcCCC-ccccccChhhHHHHHHHHHHHHHHcCCCC
Q 038818 52 PIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFNVV-GFNWMSSPAATELENIVMDWLGEMLKLPK 130 (486)
Q Consensus 52 ~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~~ 130 (486)
..-.+.+.+++.-.++..+..-..|.+--..++.++ .+.+++....+.. .+.|....+..++.+.+.+++.+.-+...
T Consensus 12 ~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~-~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~ 90 (394)
T d2ay1a_ 12 KILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMR-AVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSE 90 (394)
T ss_dssp SHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCH-HHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGG
T ss_pred hHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCH-HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccc
Confidence 455667777654333433333332322111223334 3555555544322 34577777788999999998877655432
Q ss_pred CCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCc
Q 038818 131 SFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSF 210 (486)
Q Consensus 131 ~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~ 210 (486)
. ...++++||+.+...++...... .+++.|+++...++.....++.+|. +++.+|...++.+
T Consensus 91 ~------~~~~~~~~~~~~~~l~~~~~~~~---------~~gd~V~~p~p~~~~y~~~~~~~g~---~~v~~~~~~~~~~ 152 (394)
T d2ay1a_ 91 T------TATLATVGGTGALRQALELARMA---------NPDLRVFVSDPTWPNHVSIMNFMGL---PVQTYRYFDAETR 152 (394)
T ss_dssp G------EEEEEEEHHHHHHHHHHHHHHHH---------CTTCCEEEEESCCHHHHHHHHHHTC---CEEEEECEETTTT
T ss_pred c------ccceeccCchHHHHHHHHHhhhc---------CCceEEEEecccccchHHHHHHcCC---EEEEecccchhcc
Confidence 2 24566666665554443332221 1677888998999999999999999 9999998765567
Q ss_pred ccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC---chHHHHHHHHhCceEEeeccccchhccCccchhh--hcC
Q 038818 211 TLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP---LGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF--IDG 285 (486)
Q Consensus 211 ~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp---l~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~--~~~ 285 (486)
..+.+++++.+.... ....+++.+.++||||.+-+ +++|+++|++|+++++.|.+|.......+..... ...
T Consensus 153 ~~~~~~~~~~~~~~~---~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 229 (394)
T d2ay1a_ 153 GVDFEGMKADLAAAK---KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA 229 (394)
T ss_dssp EECHHHHHHHHHTCC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHhhcc---cCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhh
Confidence 788888877665432 23467778889999999844 7899999999999999999997754322111110 000
Q ss_pred CCCCCc-eeeccccccC-CCCcceEEEeeCchHHHHH-hcCCcccccCccCCCCCccCCCCccccCCCCCCchHHHHH--
Q 038818 286 IEGADS-FSLNAHKWFF-TTLDCCCLWVKNPNALIKA-LSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLV-- 360 (486)
Q Consensus 286 ~~~aDs-i~~~~hK~l~-~p~~~g~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~-- 360 (486)
...... +..+..|.+. ....+|.+.+......... ........... ...+.-...+..+...
T Consensus 230 ~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 296 (394)
T d2ay1a_ 230 SRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQ-------------TYSFPPFHGAKIVSTVLT 296 (394)
T ss_dssp HHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-------------TTSSCCCHHHHHHHHHHH
T ss_pred hhcccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcc-------------cccchhHHHHHHHHHhcC
Confidence 012222 3334556555 4456787777654221100 00000000000 0000001111111111
Q ss_pred ---HHHhchHHHHHHHHHHHHHHHHHHHHHhCCC---CeEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHH
Q 038818 361 ---LRSFGVANLRNFLRSHVRMAQLFQELVGGDN---RFEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLES 434 (486)
Q Consensus 361 ---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 434 (486)
+.....+.++.+.++..++++.+.+.|+++. .|..+ ++..++++|. +.. .+..++|.
T Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~G~F~~~--~ls------------~~~~~~L~-- 359 (394)
T d2ay1a_ 297 TPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFV-AEHRGMFSRL--GAT------------PEQVKRIK-- 359 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH-HHCCSSEEEC--CCC------------HHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeE-CCCceeEEec--CcC------------HHHHHHHH--
Confidence 1111234455666777778888888887642 12222 3455666653 211 22233332
Q ss_pred HHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHH
Q 038818 435 INASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEK 478 (486)
Q Consensus 435 l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~ 478 (486)
.+.|+ ++.+. .|+++.. .++++|+++.++|.++
T Consensus 360 -~~~~V-~~~~g-------~Ri~~a~--l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 360 -EEFGI-YMVGD-------SRINIAG--LNDNTIPILARAIIEV 392 (394)
T ss_dssp -HHHCE-ECCTT-------CEEEGGG--CCTTTHHHHHHHHHHH
T ss_pred -HhCCE-EecCC-------CEEEecC--CCHHHHHHHHHHHHHh
Confidence 24465 34332 3999853 4556899999999886
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.53 E-value=4.1e-13 Score=132.70 Aligned_cols=371 Identities=12% Similarity=0.030 Sum_probs=204.5
Q ss_pred CHHHHHHHHHhhhcCCCcCCCCCCcceecCCCCCHHHHHHHHHHhhcC-CC-ccccccChhhHHHHHHHHHHHHHHcCCC
Q 038818 52 PIETILQDVQQHIVPGITHWQSPYYFAYFPSSGSIAGFLGEMLSSGFN-VV-GFNWMSSPAATELENIVMDWLGEMLKLP 129 (486)
Q Consensus 52 ~~~~il~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n-~~-~~~~~~~~~~~~le~~~~~~l~~l~g~~ 129 (486)
..-.+.+++++.-.++..+..-.-|..--..++..++ +.++.....+ .+ .+.|....+..++.+.+.+|+.+..+.+
T Consensus 16 ~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~-V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~ 94 (412)
T d1ajsa_ 16 LVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPV-VRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPA 94 (412)
T ss_dssp HHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHH-HHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHH-HHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcc
Confidence 3445666666443333333322222211111223344 4444443332 22 3457777778899999999988766642
Q ss_pred CCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEe-cCCCC
Q 038818 130 KSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIK-TTKSS 208 (486)
Q Consensus 130 ~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~-~d~~~ 208 (486)
... +....+.|.+++.++..+..+....+ ..-..+++.|++++.++......++..|. +.+.++ ..+.+
T Consensus 95 ~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~---~~v~~~~~~~~~ 164 (412)
T d1ajsa_ 95 LQE---KRVGGVQSLGGTGALRIGAEFLARWY----NGTNNKDTPVYVSSPTWENHNGVFTTAGF---KDIRSYRYWDTE 164 (412)
T ss_dssp HHT---TCEEEEEEEHHHHHHHHHHHHHHHHS----SSSSCCCSCEEEEESCCTHHHHHHHHTTC---SCEEEEECEETT
T ss_pred ccc---ccceeecccchhhHHHHHHHHHHHHh----hhcCCCCCEEEEeCCcchhhHHHHHHcCC---eEEEeecccccc
Confidence 110 00135567777766655554433221 00112678899999999999999999998 765554 33334
Q ss_pred CcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC---CchHHHHHHHHhCceEEeeccccchhccCccch----h
Q 038818 209 SFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD---PLGPLCDIAKRYSIWVHVDAAYAGSACICPEFR----H 281 (486)
Q Consensus 209 ~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id---pl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~----~ 281 (486)
.+..|.+.+++.+.... ....+++.+.++||||.+- .+++|+++|++||++++.|.+|........... .
T Consensus 165 ~~~~d~~~~~~~~~~~~---~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 241 (412)
T d1ajsa_ 165 KRGLDLQGFLSDLENAP---EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp TTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred cccccHHHHHHHHHhcc---CCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhh
Confidence 56889998887776532 2356788889999999985 488999999999999999999976543221110 0
Q ss_pred hhcCCCCCCceeeccccccCCC-CcceEEEeeCchH--HHHHhcCCcccccCccCCCCCccCCCCccccCCCCCCchHHH
Q 038818 282 FIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNA--LIKALSTNPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLW 358 (486)
Q Consensus 282 ~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~ 358 (486)
.......-..+..+..|.++.| ..+|.++...... ..+..... ...... +..+. ..+...
T Consensus 242 ~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~---~~~~~~ 304 (412)
T d1ajsa_ 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQM-QKIVRV-------------TWSNP---PAQGAR 304 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH-HHHHHT-------------TTSSC---CSHHHH
T ss_pred hhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHH-HHHhhc-------------ccccc---chHHHH
Confidence 0111112234455556665544 4688887765422 11110000 000000 00011 112222
Q ss_pred HHHHHh--------chHHHHHHHHHHHHHHHHHHHHHhCCCC---eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHH
Q 038818 359 LVLRSF--------GVANLRNFLRSHVRMAQLFQELVGGDNR---FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANEL 427 (486)
Q Consensus 359 ~~l~~~--------g~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 427 (486)
.....+ ..+.++.+.++..++++.+.+.|+++.. +..+ ++..++++| .+.. .+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i-~~~~G~F~~--~~ls------------~~~ 369 (412)
T d1ajsa_ 305 IVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHI-TDQIGMFSF--TGLN------------PKQ 369 (412)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHH-HHCCSSEEE--CCCC------------HHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeee-cCCCeEEEe--cCCC------------HHH
Confidence 222111 1234556667777888888888887631 2222 233345544 2211 222
Q ss_pred HHHHHHHH-HhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 428 NRKLLESI-NASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 428 ~~~l~~~l-~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
.++| .+.|+ ++.+. .|+++. .+++++|+++.++|+++++++
T Consensus 370 ----v~~L~~e~gV-~~vpg-------~Ri~~a--g~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 370 ----VEYLINQKHI-YLLPS-------GRINMC--GLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp ----HHHHHHTTCE-ECCTT-------SEEEGG--GCCTTTHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHhCCE-EEeCC-------CeEEec--cCCHHHHHHHHHHHHHHHHhc
Confidence 2334 45565 34332 299985 345668999999999998875
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.52 E-value=5.6e-13 Score=131.67 Aligned_cols=314 Identities=10% Similarity=0.029 Sum_probs=186.1
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEc---CCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecC
Q 038818 103 FNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQ---GTTCEAILCTLAAARDQILNEIGRENISRLVVYGSD 179 (486)
Q Consensus 103 ~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t---~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~ 179 (486)
+.|....+..++.+.+.+++.+..+..... ..+.+ +|++.+...++...... .+++.|++++
T Consensus 67 ~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~gd~Vlip~ 131 (412)
T d1yaaa_ 67 HEYLGITGLPSLTSNAAKIIFGTQSDALQE------DRVISVQSLSGTGALHISAKFFSKF---------FPDKLVYLSK 131 (412)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHCTTCHHHHT------TCEEEEEEEHHHHHHHHHHHHHHHH---------CTTCCEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHhcccCccccc------cceeEEecccchhHHHHHHHHHhcc---------CCCCEEeccc
Confidence 457777778899999889887776632110 22222 23333222222211111 1677888998
Q ss_pred CCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccC---CchHHHHHH
Q 038818 180 QTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVD---PLGPLCDIA 256 (486)
Q Consensus 180 ~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~id---pl~~I~~i~ 256 (486)
..+......++..|. +++.+|+..++++..|.+.+++.+...+ ....+++.+.++||||.+- .+++|+++|
T Consensus 132 P~~~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a 205 (412)
T d1yaaa_ 132 PTWANHMAIFENQGL---KTATYPYWANETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAI 205 (412)
T ss_dssp SCCTTHHHHHHTTTC---CEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred ccCchhHHHHHHcCC---ceecccccccccccccchhhhcccccCC---CceEEEEecCCCCCccccCCHHHHHHHHhhh
Confidence 999999999999999 9999998766678899999998887543 2356788899999999985 488999999
Q ss_pred HHhCceEEeeccccchhccCccch-----hhhcCCCCC--CceeeccccccC-CCCcceEEEeeCchH-----HHHHhcC
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFR-----HFIDGIEGA--DSFSLNAHKWFF-TTLDCCCLWVKNPNA-----LIKALST 323 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~-----~~~~~~~~a--Dsi~~~~hK~l~-~p~~~g~~~~~~~~~-----~~~~~~~ 323 (486)
++++++++.|.+|........... ......... -.+..++.|.++ ...-+|++++..+.. ....+..
T Consensus 206 ~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~ 285 (412)
T d1yaaa_ 206 ASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTS 285 (412)
T ss_dssp HHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHH
T ss_pred ccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHH
Confidence 999999999999976543221100 000111111 256667888777 456789988765411 1111100
Q ss_pred CcccccCccCCCCCccCCCCccccCCCCCCchHHHHHHHHh--------chHHHHHHHHHHHHHHHHHHHHHhCCCC---
Q 038818 324 NPEFLRNKASDSKQVVDYKDWQITLSRRFRALKLWLVLRSF--------GVANLRNFLRSHVRMAQLFQELVGGDNR--- 392 (486)
Q Consensus 324 ~~~y~~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--------g~~g~~~~~~~~~~~a~~l~~~L~~~~~--- 392 (486)
........ +..+ ...+........+ ..+.++.+.++..++++.+.+.|+++..
T Consensus 286 ~~~~~~~~-------------~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 349 (412)
T d1yaaa_ 286 QLAKIIRS-------------EVSN---PPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGN 349 (412)
T ss_dssp HHHHHHHT-------------TTSS---CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHH-------------HhcC---CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 00000000 0000 1122222222222 1234566667777788888888876521
Q ss_pred eEEecCCCeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHH
Q 038818 393 FEIVAPRNFAVVCFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAW 472 (486)
Q Consensus 393 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i 472 (486)
+..+ +++.++++|. +.. .++.++|. .+.|+ ++.++ .||++.. ++++.||++.
T Consensus 350 ~~~~-~~~gG~F~~~--~ls------------~e~~~~L~---~e~~V-~~~~g-------~Ris~~g--~~~~~i~~l~ 401 (412)
T d1yaaa_ 350 WDHI-VNQCGMFSFT--GLT------------PQMVKRLE---ETHAV-YLVAS-------GRASIAG--LNQGNVEYVA 401 (412)
T ss_dssp CTHH-HHCCSSEEEC--CCC------------HHHHHHHH---HHHCE-ECCTT-------SEEEGGG--CCTTTHHHHH
T ss_pred Ccee-CCCceEEEec--CcC------------HHHHHHHH---HhCCE-EECCC-------CEEEecc--CCHHHHHHHH
Confidence 2222 3445665552 211 23333333 34565 34332 3899853 4555899999
Q ss_pred HHHHHHHHH
Q 038818 473 KVVQEKLDG 481 (486)
Q Consensus 473 ~~l~~~~~~ 481 (486)
++|.++++.
T Consensus 402 ~ai~~v~k~ 410 (412)
T d1yaaa_ 402 KAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=4e-12 Score=124.62 Aligned_cols=297 Identities=12% Similarity=0.070 Sum_probs=175.2
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHc-----
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIA----- 192 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~----- 192 (486)
+.+.++++.+.+ ...++.+||+|+..|+.++|....+.......+..++......|.....+....
T Consensus 88 ~~~~~~~~~~~~---------~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~ 158 (404)
T d2byla1 88 YEEYITKLFNYH---------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTS 158 (404)
T ss_dssp HHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHH
T ss_pred HHHhhhhccccc---------ccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCccc
Confidence 445677777653 468899999999999999998654432222223445555666664433332221
Q ss_pred --CCC--CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceEE
Q 038818 193 --GID--PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWVH 264 (486)
Q Consensus 193 --G~g--~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~lh 264 (486)
+.+ ...+..+|.+ |+++|++++.+. ...+|++.-.....|.+-| +++|.++|++||+.|+
T Consensus 159 ~~~~~p~~~~~~~~p~~-------d~~~l~~~l~~~-----~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI 226 (404)
T d2byla1 159 YDGFGPFMPGFDIIPYN-------DLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFI 226 (404)
T ss_dssp HTTSCSCCTTEEEECTT-------CHHHHHHHHTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCCCCeeEeccc-------CHHHHHHhcCCC-----CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEE
Confidence 221 1245556543 789999988542 2345666665666676655 9999999999999999
Q ss_pred eeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCC
Q 038818 265 VDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKD 343 (486)
Q Consensus 265 vD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 343 (486)
+|+++.|+.....-+.....++ ..|.+++ -|.+++. .+.|.++++++ +.+.+ .+....
T Consensus 227 ~DEV~tGfgR~G~~~a~~~~gv-~PDi~~~--gK~l~gG~~p~~av~~~~~--i~~~~--~~~~~~-------------- 285 (404)
T d2byla1 227 ADEIQTGLARTGRWLAVDYENV-RPDIVLL--GKALSGGLYPVSAVLCDDD--IMLTI--KPGEHF-------------- 285 (404)
T ss_dssp EECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTSSCCEEEEECHH--HHTTS--CTTSSC--------------
T ss_pred eeccccccccccccchhhhcCC-CCCEEEE--CchhhCCCccceeeeechh--hhhcc--CCCCCC--------------
Confidence 9999977543332222222344 4688765 5877765 56888888644 21222 111110
Q ss_pred ccccCCCCCCchHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCC--CeeEEEEEeecCCCCCCCC
Q 038818 344 WQITLSRRFRALKLWLV---LRSFGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPR--NFAVVCFRVLPSASGLGDG 418 (486)
Q Consensus 344 ~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~ 418 (486)
.+-...++.+.++ |..+-.+ +..++..++..++.+.|+++.. +.+.+. ...+..+.+....
T Consensus 286 ----~T~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~-~~i~~vRg~Gl~~~i~~~~~~------ 351 (404)
T d2byla1 286 ----STYGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPS-DVVTAVRGKGLLNAIVIKETK------ 351 (404)
T ss_dssp ----CSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTSCT-TTEEEEEEETTEEEEEECCCS------
T ss_pred ----cCCCcCHHHHHHHHHHHHHHHhc---CchhhhhHhhHHHHHHHHhhcc-ccceeeeecccEEEEEEecCC------
Confidence 1112234444444 4444333 3556677788889998877532 111110 1124445443321
Q ss_pred CCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 419 KANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.. ...++.+++.++|.+... . +...+|++. ....|++|||++++.|++.+.+
T Consensus 352 --~~----~~~~~~~~l~~~Gvl~~~-~---~~~~i~l~P-pL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 352 --DW----DAWKVCLRLRDNGLLAKP-T---HGDIIRFAP-PLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp --SC----CHHHHHHHHHHTTEECEE-E---ETTEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred --ch----hHHHHHHHHHhCCeEEec-C---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHc
Confidence 11 134567778888975332 1 124688875 3457899999999999998764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.6e-11 Score=119.71 Aligned_cols=320 Identities=12% Similarity=0.029 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
++.+.++.+.+.+++.-... ...+++++||+|+..|+..||...- +..+|-.....|-...-+...
T Consensus 82 ~~~~~~la~~l~~~~p~~~~------~~v~f~~sGseA~e~Alk~ar~~t~--------r~~ii~~~~~yHG~t~~~~~~ 147 (425)
T d1sffa_ 82 YEPYLELCEIMNQKVPGDFA------KKTLLVTTGSEAVENAVKIARAATK--------RSGTIAFSGAYHGRTHYTLAL 147 (425)
T ss_dssp CHHHHHHHHHHHHHSSCSSC------EEEEEESSHHHHHHHHHHHHHHHHT--------CCEEEEETTCCCCSSHHHHHH
T ss_pred CcHHHHHHHHHHhhhhhccc------ceeeeeccccchhhhHHHHhhhhhc--------ccceEeecCCCcCccccchhh
Confidence 45556677888888743221 1578899999999999999998641 233444455566555555555
Q ss_pred cCCCC----------CCeEEEecCC--CCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHH
Q 038818 192 AGIDP----------KNFRAIKTTK--SSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDI 255 (486)
Q Consensus 192 ~G~g~----------~~v~~v~~d~--~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i 255 (486)
.|... ......+.+. .+............+.........+..|++.-.....|.+.| ++.|.++
T Consensus 148 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~l 227 (425)
T d1sffa_ 148 TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRAL 227 (425)
T ss_dssp SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHH
T ss_pred cCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHH
Confidence 54211 1122222211 011111111111122222222234556777665556676644 8999999
Q ss_pred HHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 256 AKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
|++||+.|++|+++.|+......+....-++ ..|.+++ .|.++..++.|.++.+++- .+.+. +...
T Consensus 228 c~~~gillI~DEV~tG~gR~g~~~a~~~~gv-~PDi~~~--gK~l~gG~P~~av~~~~~i--~~~~~--~~~~------- 293 (425)
T d1sffa_ 228 CDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLTTF--AKSIAGGFPLAGVTGRAEV--MDAVA--PGGL------- 293 (425)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEEEE--CGGGGTSSCCEEEEEEHHH--HTTSC--TTSB-------
T ss_pred HHHcCceEEeccccccCCCcchhhHHHhcCC-Cccceec--ccccCCCcceEEEEEcHHH--HHhhC--CCCC-------
Confidence 9999999999999987543222222222234 5788775 5888877889999988652 11111 1100
Q ss_pred CCccCCCCccccCCCCCCchHHHHHHHH---hchHHHHHHHHHHHHHHHHHHHH----HhCCCCeEEecCCCeeEEEEEe
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWLVLRS---FGVANLRNFLRSHVRMAQLFQEL----VGGDNRFEIVAPRNFAVVCFRV 408 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~---~g~~g~~~~~~~~~~~a~~l~~~----L~~~~~~~~~~~~~~~~v~f~~ 408 (486)
..+-....+++.++++. +-.+. ..++...+.+++.+. +++.|.+.-+.. ...++.+.+
T Consensus 294 -----------~~T~~gnpl~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg-~Gl~~~i~f 358 (425)
T d1sffa_ 294 -----------GGTYAGNPIACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPEIGDVRG-LGAMIAIEL 358 (425)
T ss_dssp -----------CCSSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE-ETTEEEEEE
T ss_pred -----------CCCCCcCHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhhhhhhhhHhhCCceEEEEc-cccEEEEEE
Confidence 01112334554444444 43333 334444455555444 455554322211 123445554
Q ss_pred ecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 409 LPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
..+... ......+...+.+++.++|.++..... ....+|++. ....|++|||+++++|+++++++-
T Consensus 359 ~~~~~~------~~~~~~~~~~~~~~l~~~Gvl~~~~g~--~~n~i~~~P-pL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 359 FEDGDH------NKPDAKLTAEIVARARDKGLILLSCGP--YYNVLRILV-PLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp BGGGCT------TSBCHHHHHHHHHHHHHTTEECEEEST--TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred eccCcc------CCccHHHHHHHHHHHHHCCCEEeccCC--CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 332100 111145667888889999975433221 235689886 456788999999999999988763
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=3.9e-12 Score=124.01 Aligned_cols=294 Identities=14% Similarity=0.028 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHH
Q 038818 112 TELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQI 191 (486)
Q Consensus 112 ~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 191 (486)
.+.+.++.+.+.+....... -..++++||+||..|+..||... + ++.++......|-...-+...
T Consensus 78 ~~~~~~la~~l~~~~~~~~~-------~v~f~~sGseA~e~Aik~Ar~~t-------~-r~~ii~~~~~yHG~t~~~~~~ 142 (387)
T d1vefa1 78 TPMRGEFYRTLTAILPPELN-------RVFPVNSGTEANEAALKFARAHT-------G-RKKFVAAMRGFSGRTMGSLSV 142 (387)
T ss_dssp CHHHHHHHHHHHHTSCTTEE-------EEEEESSHHHHHHHHHHHHHHHH-------S-CCEEEEETTCCCCSSHHHHHT
T ss_pred CchHHHHHHHhhhhccccce-------eeccccCchHHHHHHHHHHHhhc-------c-cceecccccCCCCCccceEec
Confidence 34444555566665433222 57899999999999999998763 1 333444444455444444333
Q ss_pred cCC--------C-CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHH
Q 038818 192 AGI--------D-PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKR 258 (486)
Q Consensus 192 ~G~--------g-~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~ 258 (486)
.|- + ...+..+|.+ |++.|++.++++ +..|++.-.....|.+-| +++|.++|++
T Consensus 143 s~~~~~~~~~~p~~~~~~~~p~~-------d~~~l~~~~~~~------iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~ 209 (387)
T d1vefa1 143 TWEPKYREPFLPLVEPVEFIPYN-------DVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQE 209 (387)
T ss_dssp CCCHHHHGGGCSCSSCEEEECTT-------CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred cCCccccCCCCCCCCCceEeCCC-------CHHHHHHhcCCC------eEEEEEECCCCCCCCccCCHHHHHHHHHHHHH
Confidence 331 1 1245566543 788999888654 345666655555677756 9999999999
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCc
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQV 338 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 338 (486)
||+.|++|+++.|+.....-+....-++ ..|.+++ -|.+++.+..+.+..+++.. . .+ .+.+.
T Consensus 210 ~g~llI~DEV~tGfgR~G~~~~~~~~~v-~PDi~~~--gK~l~gG~~~~~~~~~~~~~-~-~~--~~~~~---------- 272 (387)
T d1vefa1 210 KGALLILDEIQTGMGRTGKRFAFEHFGI-VPDILTL--AKALGGGVPLGVAVMREEVA-R-SM--PKGGH---------- 272 (387)
T ss_dssp HTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSCEEEEEEHHHH-H-TS--CTTSS----------
T ss_pred cCceEEecccccccCccCCCcccccCCc-CCceeee--cccCCCCccccccccceeee-e-cc--ccCCc----------
Confidence 9999999999987533221111111233 4788876 47777667777777765422 1 11 11111
Q ss_pred cCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCC--CeEEecCCCeeEEEEEeecCCCCCC
Q 038818 339 VDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGDN--RFEIVAPRNFAVVCFRVLPSASGLG 416 (486)
Q Consensus 339 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~--~~~~~~~~~~~~v~f~~~~~~~~~~ 416 (486)
..+-...++++.+++..+..---.+..++..++.+++.+.|+++. .+.-+. -...+..+.+..+.
T Consensus 273 --------g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vr-g~Gl~~~ie~~~~~---- 339 (387)
T d1vefa1 273 --------GTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVR-GMGLMVGLELKEKA---- 339 (387)
T ss_dssp --------CCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEEE-EETTEEEEEESSCS----
T ss_pred --------cccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCCCceEEEe-ecceEEEEEEeCCc----
Confidence 011122445555544443211123456777788899999998753 221110 01124445554321
Q ss_pred CCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHH
Q 038818 417 DGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKL 479 (486)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~ 479 (486)
...+.+.+.++|.+.+. .+...+|++. ....|++|||+++++|++++
T Consensus 340 -----------~~~~~~~~~~~g~l~~~----~g~~~ir~~P-pl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 340 -----------APYIARLEKEHRVLALQ----AGPTVIRFLP-PLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp -----------HHHHHHHHHHHCEECEE----SSTTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHCCCeEEe----cCCCEEEEEC-CccCCHHHHHHHHHHHHHHh
Confidence 22344455566765432 2345788876 45678899999999998875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=5.5e-12 Score=121.79 Aligned_cols=285 Identities=15% Similarity=0.155 Sum_probs=182.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHH
Q 038818 107 SSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQ 186 (486)
Q Consensus 107 ~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 186 (486)
..|....+|+. ++.|-|.+ .++++++|..|+ .++..... +++.|+++...+....
T Consensus 53 gnPT~~~lE~~----la~LE~~~---------~a~~~sSGmaAi-~~~l~~l~-----------~gd~iv~~~~~yg~t~ 107 (393)
T d1n8pa_ 53 QNPNRENLERA----VAALENAQ---------YGLAFSSGSATT-ATILQSLP-----------QGSHAVSIGDVYGGTH 107 (393)
T ss_dssp CCHHHHHHHHH----HHHHTTCS---------EEEEESCHHHHH-HHHHHTSC-----------SSCEEEEESSCCHHHH
T ss_pred CChHHHHHHHH----HHHHhCCc---------eEEEecCchhHH-Hhhhhccc-----------CCCeeeeeeeecccch
Confidence 45666666654 77776643 467788886554 33333222 4456666766666644
Q ss_pred HHHH----HcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHH----H
Q 038818 187 KAAQ----IAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAK----R 258 (486)
Q Consensus 187 ~a~~----~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~----~ 258 (486)
..+. ..|+ ++..++. +.+++++++++++ .+|.+..++|++..+-||++|+++|+ +
T Consensus 108 ~~~~~~l~~~gi---~~~~~~~--------~~~~~~~~i~~~t------~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~ 170 (393)
T d1n8pa_ 108 RYFTKVANAHGV---ETSFTND--------LLNDLPQLIKENT------KLVWIETPTNPTLKVTDIQKVADLIKKHAAG 170 (393)
T ss_dssp HHHHHTSTTTCS---CCEEESS--------HHHHHHHHSCSSE------EEEEECSSCTTTCCCCCHHHHHHHHHHHTTT
T ss_pred hhhhhhhhcccc---eeEEeec--------chHHHHHHhhhhc------ceeEecCcchhhhhccchhhhhhhhhhhccc
Confidence 4443 3355 6666531 4567888877654 48999999999999999999999999 6
Q ss_pred hCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCC--cceEEEeeCchHHHHHhcCCcccccCccCCCC
Q 038818 259 YSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTL--DCCCLWVKNPNALIKALSTNPEFLRNKASDSK 336 (486)
Q Consensus 259 ~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~--~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 336 (486)
+|+.++||.+++.....-| +.. +||.+.-|..|++++.- -+|++..+++....+.. .....
T Consensus 171 ~g~~lvVDnT~atP~~~~P-l~~------GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~-~~~~~--------- 233 (393)
T d1n8pa_ 171 QDVILVVDNTFLSPYISNP-LNF------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ-FLQNA--------- 233 (393)
T ss_dssp TTCEEEEECTTTHHHHCCG-GGG------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH-HHHHH---------
T ss_pred CCceEEEecCccCcccCCc-hhh------CCCEEEEccccccCCCCccccceeeecchhHHHHHH-HHHhh---------
Confidence 7899999999988765444 222 79999999999998654 35666666554432211 00000
Q ss_pred CccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEecCC----------------
Q 038818 337 QVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD-NRFEIVAPR---------------- 399 (486)
Q Consensus 337 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~---------------- 399 (486)
.|-...+..+|..++ |.+-+..++++..++|..+.+.|+++ |.++.+.-|
T Consensus 234 -----------~G~~~~p~~a~ll~r--gl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~ 300 (393)
T d1n8pa_ 234 -----------IGAIPSPFDAWLTHR--GLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR 300 (393)
T ss_dssp -----------HCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG
T ss_pred -----------cCCCCChHHHHHHHh--CCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccc
Confidence 111234566777776 56888999999999999999999875 666654311
Q ss_pred ---CeeEEEEEeecCCCCCCCCCCccchHHHHHHHHHHHH--hcCc-------EEEeeee-----E-------C--CEeE
Q 038818 400 ---NFAVVCFRVLPSASGLGDGKANEGANELNRKLLESIN--ASGQ-------LYVSHGM-----V-------A--GIYF 453 (486)
Q Consensus 400 ---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~g~-------~~~~~~~-----~-------~--~~~~ 453 (486)
..++++|.+.+. .+...++.+.|. ..+. ++..+.. . . ..+.
T Consensus 301 ~~~~G~~~sf~l~~~-------------~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~l 367 (393)
T d1n8pa_ 301 DALGGGMISFRIKGG-------------AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDL 367 (393)
T ss_dssp GGCCCSEEEEEESSC-------------HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTE
T ss_pred cCCCCceEEEEEeCC-------------HHHHHHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCE
Confidence 135889988653 233455666542 1111 1111110 0 0 1357
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 454 IRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 454 lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
+|+|++- ||+|.+++.|++.++.
T Consensus 368 iRlSvGl-----E~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 368 VRISVGI-----EDTDDLLEDIKQALKQ 390 (393)
T ss_dssp EEEECCS-----SCHHHHHHHHHHHHHH
T ss_pred EEEEecc-----CCHHHHHHHHHHHHHH
Confidence 9999952 2677778777777664
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=2.1e-13 Score=134.17 Aligned_cols=208 Identities=13% Similarity=-0.049 Sum_probs=138.1
Q ss_pred HHHHHHHHhhcCC--CccccccChhhHHHHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHc
Q 038818 88 GFLGEMLSSGFNV--VGFNWMSSPAATELENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEI 165 (486)
Q Consensus 88 ~~~~~~l~~~~n~--~~~~~~~~~~~~~le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 165 (486)
..+.++.....+. ....|....+..++.+.+.+++.+..+.+... ...+.+.+++.+...++........
T Consensus 47 ~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~~~~~~~~--- 118 (397)
T d3tata_ 47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQ-----QRVATIQTLGGSGALKVGADFLKRY--- 118 (397)
T ss_dssp HHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHT-----TCEEECCBSHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCc-----CcEEEecCchhHHHHHHHHHHhhhc---
Confidence 3455555443322 23457777778899999888888766653211 1345555555444434443332221
Q ss_pred cccCCCCeEEEecCCCchHHHHHHHHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccc
Q 038818 166 GRENISRLVVYGSDQTHSALQKAAQIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITT 245 (486)
Q Consensus 166 ~~~~~~~~~v~~s~~~H~s~~~a~~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~ 245 (486)
.+++.|++++.++......++.+|. +++.+|++.++.+..|.+++.+.+... ...+.+++.+.++||||.
T Consensus 119 ----~pgd~Vlv~~P~y~~y~~~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~ 188 (397)
T d3tata_ 119 ----FPESGVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPTGA 188 (397)
T ss_dssp ----CSSCCCEECSSCCTTHHHHHHTTTC---CCEECCCCCTTTSSCCHHHHHHHHTTC---CSSCCCEECSSSCSSSCC
T ss_pred ----CCCCcceecccCccccHHHHHHcCC---EEEEEecchhhccccchHHHHHHhhhc---ccccEEEEecCCCCCCCe
Confidence 1677899999999999999999999 999999987777888988888776543 223557888889999999
Q ss_pred c---CCchHHHHHHHHhCceEEeeccccchhccCccchhh---hcCCCCCC-ceeeccccccCCC-CcceEEEeeCc
Q 038818 246 V---DPLGPLCDIAKRYSIWVHVDAAYAGSACICPEFRHF---IDGIEGAD-SFSLNAHKWFFTT-LDCCCLWVKNP 314 (486)
Q Consensus 246 i---dpl~~I~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~---~~~~~~aD-si~~~~hK~l~~p-~~~g~~~~~~~ 314 (486)
+ +.+++|+++|++|+++++.|.+|.......+..... .... .-. .+..++.|.++.| .-+|++.....
T Consensus 189 ~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~~G~RiG~~~~~~~ 264 (397)
T d3tata_ 189 DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA-GLPALVSNSFSKIFSLYGERVGGLSVMCE 264 (397)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTT-TCCCEECBCCHHHHTBTTTCCBCCEEECS
T ss_pred eCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhc-CCceEEEecCcccccccCccccccccchh
Confidence 8 457899999999999999999997754321111111 1111 122 3455678877654 45788776654
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.43 E-value=5.3e-11 Score=116.64 Aligned_cols=299 Identities=9% Similarity=0.000 Sum_probs=162.7
Q ss_pred HHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE-ecCCCchHHHHHHHHcCCC-
Q 038818 118 VMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY-GSDQTHSALQKAAQIAGID- 195 (486)
Q Consensus 118 ~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~-~s~~~H~s~~~a~~~~G~g- 195 (486)
+.+.++++.+.+ ...++.+|++|+..|+.++|....+..... .....+. .....|-.........+..
T Consensus 86 ~~~~~~~~~~~~---------~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~-~~~~~~~~~~~~~hg~~~~~~~~~~~~~ 155 (404)
T d1z7da1 86 CERYLTNLLGYD---------KVLMMNTGAEANETAYKLCRKWGYEVKKIP-ENMAKIVVCKNNFSGRTLGCISASTTKK 155 (404)
T ss_dssp HHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC-TTCCEEEEETTC----------------
T ss_pred HHHhhhhccccc---------eeeeeccccchHHHHHHHHHHHHhhccccc-ccccccccccccCCCCcccccccccccc
Confidence 445566666653 468899999999999999998754331111 1222233 2333333322222222211
Q ss_pred --------CCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHHHHhCceE
Q 038818 196 --------PKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIAKRYSIWV 263 (486)
Q Consensus 196 --------~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~~~~g~~l 263 (486)
...+..+|.+ +.+.|+..+.+ ..+.+|++.-.....|.+-| +++|.++|++||+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~-----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~ll 223 (404)
T d1z7da1 156 CTSNFGPFAPQFSKVPYD-------DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLF 223 (404)
T ss_dssp ----------CEEEECTT-------CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEE
T ss_pred cccCCCCCCccccccccc-------hHHHHHHHhcC-----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 0123333322 55666665532 22456777766777788776 899999999999999
Q ss_pred EeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCC
Q 038818 264 HVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYK 342 (486)
Q Consensus 264 hvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 342 (486)
++|+++.|+......+....-++ ..|.+++ .|.++.. +++|.++.+++- .+.+ .+....
T Consensus 224 I~DEV~tGfgRtG~~~~~e~~gv-~PDivt~--gK~l~gG~~p~~~v~~~~~i--~~~~--~~~~~~------------- 283 (404)
T d1z7da1 224 VADEVQTGLGRTGKLLCVHHYNV-KPDVILL--GKALSGGHYPISAVLANDDI--MLVI--KPGEHG------------- 283 (404)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTSSCCEEEEECHHH--HTTC--CTTCCC-------------
T ss_pred EEEcCccCCCcccccccccccCC-CCCEEEE--cccccCCCCCcccccchHHH--HccC--CCCCcC-------------
Confidence 99999976533222222222244 5788866 5888754 567888877542 1111 111110
Q ss_pred CccccCCCCCCchHHHHH---HHHhchHHHHHHH-HHHHHHHHHHHHHHhCCCCeEEecCCCeeEEEEEeecCCCCCCCC
Q 038818 343 DWQITLSRRFRALKLWLV---LRSFGVANLRNFL-RSHVRMAQLFQELVGGDNRFEIVAPRNFAVVCFRVLPSASGLGDG 418 (486)
Q Consensus 343 ~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~-~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~ 418 (486)
.+-....+++.++ +..+-.+.+.+.+ +....+.+.+.+.+++.+.+.-+.. ...++.+.+..+.
T Consensus 284 -----~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-~Gl~~~i~~~~~~------ 351 (404)
T d1z7da1 284 -----STYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLLCAIEFKNEL------ 351 (404)
T ss_dssp -----CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECTTT------
T ss_pred -----cCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEe-eCcEEEEEEcCCc------
Confidence 1111234444444 4444333333333 3344455566666666654432211 1235556555431
Q ss_pred CCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 419 KANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 419 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
. ...++..++.++|.+. .+. +...+|++. ....|+++||+++++|+++++++
T Consensus 352 ---~----~~~~~~~~l~~~Gl~~-~~~---~~~~ir~~P-pl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 352 ---V----NVLDICLKLKENGLIT-RDV---HDKTIRLTP-PLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp ---C----CHHHHHHHHHHTTEEC-CEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---c----cHHHHHHHHHhCCeEE-ecC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHhh
Confidence 1 1335667778889743 221 234688875 34678999999999999998875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.41 E-value=1.8e-11 Score=120.90 Aligned_cols=306 Identities=10% Similarity=-0.015 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEE-ecCCCchHHH------
Q 038818 114 LENIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVY-GSDQTHSALQ------ 186 (486)
Q Consensus 114 le~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~-~s~~~H~s~~------ 186 (486)
.+..+.+.+.++.+... ...|+++|++||..|+..||... .+..|+ .....|-...
T Consensus 93 ~~~~la~~~~~~~~~~~--------~v~f~~sGseA~e~Alk~ar~~t---------~r~~ii~~~~~yHG~t~~~~~~~ 155 (427)
T d2gsaa_ 93 LENVLAEMVNDAVPSIE--------MVRFVNSGTEACMAVLRLMRAYT---------GRDKIIKFEGCYHGHADMFLVKA 155 (427)
T ss_dssp HHHHHHHHHHHHSTTCS--------EEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSCGGGCSSC
T ss_pred HHHHHHHHHHhhCCccc--------cccccCCcHHHHHHHHHHHHHhc---------CCCeEEEEecccccCcceeeeec
Confidence 44455667777765432 46899999999999999998763 333344 4444442211
Q ss_pred -HHHHHcCCCCC---------CeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHH
Q 038818 187 -KAAQIAGIDPK---------NFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPL 252 (486)
Q Consensus 187 -~a~~~~G~g~~---------~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I 252 (486)
......+++.. ....+| .-|+++|++++++. ...+..|++.-.....|.+-| +++|
T Consensus 156 ~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~le~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~~l 225 (427)
T d2gsaa_ 156 GSGVATLGLPSSPGVPKKTTANTLTTP-------YNDLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGL 225 (427)
T ss_dssp CHHHHHTTCCSCSSSCHHHHTTEEEEC-------TTCHHHHHHHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHHHH
T ss_pred CCcccccCCCCCCCCcccCccceeccC-------cchHHHHHHHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHHHH
Confidence 11112232110 222222 34899999998753 223556777776666788877 9999
Q ss_pred HHHHHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCcc
Q 038818 253 CDIAKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKA 332 (486)
Q Consensus 253 ~~i~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~ 332 (486)
.++|++||++|++|+++.|+- ...-+....-++ ..|.+++. |.++..++.|.++.+++ .. +.+.....+..
T Consensus 226 ~~lc~~~~~llI~DEv~tG~r-~g~~~~~~~~gi-~PDi~~~g--K~lggG~p~~a~~~~~~-i~-~~~~~~~~~~~--- 296 (427)
T d2gsaa_ 226 REITLEHDALLVFDEVMTGFR-IAYGGVQEKFGV-TPDLTTLG--KIIGGGLPVGAYGGKRE-IM-QLVAPAGPMYQ--- 296 (427)
T ss_dssp HHHHHHTTCEEEEECTTTBTT-TBTTCHHHHTTC-CCSEEEEC--GGGGTTSCCEEEEECHH-HH-TTBTTTSSBCC---
T ss_pred HHHHHHhceeeeeccccccce-ecccchHHhcCC-CHHHHhhh--hccCCCcceeeeeehHH-HH-HHhcccCCCcC---
Confidence 999999999999999997752 111111112233 56887764 66666566777777654 22 22211111110
Q ss_pred CCCCCccCCCCccccCCCCCCchHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHHh----CCCC-eEEecCCCeeEE
Q 038818 333 SDSKQVVDYKDWQITLSRRFRALKLWLVLR---SFGVANLRNFLRSHVRMAQLFQELVG----GDNR-FEIVAPRNFAVV 404 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~---~~g~~g~~~~~~~~~~~a~~l~~~L~----~~~~-~~~~~~~~~~~v 404 (486)
..+-...++++.++++ .+-.+. ..++..++.++|.+.|+ +.+. ..+... ..++
T Consensus 297 --------------~~T~~gnpla~AAala~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~--ggm~ 357 (427)
T d2gsaa_ 297 --------------AGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGLLAIAQETGHAACGGQV--SGMF 357 (427)
T ss_dssp --------------CCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE--TTEE
T ss_pred --------------CCCCCCCchhhHHHHHhhHHhhhhh---HHhhhhHHHHHHHHHHHHHHhhcCCCcEEccc--CCeE
Confidence 1111234444444444 443333 34555555666665554 3321 222211 2344
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
++.+........+.. .....+...++...|.++|++ +.+... . ++. .....|++|||++++++++++++|
T Consensus 358 ~i~~~~~~v~~~~~~-~~~d~~~~~~~~~~ll~~Gv~-l~p~~~--~---~~~-~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 358 GFFFTEGPVHNYEDA-KKSDLQKFSRFHRGMLEQGIY-LAPSQF--E---AGF-TSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp EEESSSCCCCSHHHH-TTSCHHHHHHHHHHHHHTTEE-CCSSTT--S---CEE-CCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEeccCCCCHHHh-hcccHHHHHHHHHHHHHCCEE-ECCCCC--c---cee-CCCCCCHHHHHHHHHHHHHHHHhC
Confidence 444432211000000 000123445677788888963 443211 1 122 245678889999999999988754
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.37 E-value=1.7e-10 Score=114.01 Aligned_cols=317 Identities=13% Similarity=0.029 Sum_probs=168.2
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC-
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI- 194 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~- 194 (486)
.++.+.|.++..-.-+ ..+|+++||+|+..|+..||... + ++.++......|-...-+....+.
T Consensus 86 ~~la~~L~~~~~~~~~-------~v~f~~sGseA~e~Alk~Ar~~t-------~-r~~i~~~~~~yHG~t~~~~~~~~~~ 150 (431)
T d1zoda1 86 VDLATRLANITPPGLD-------RALLLSTGAESNEAAIRMAKLVT-------G-KYEIVGFAQSWHGMTGAAASATYSA 150 (431)
T ss_dssp HHHHHHHHHHSCTTCC-------EEEEESCHHHHHHHHHHHHHHHH-------T-CCEEEEETTCCCCSSHHHHHTCCSS
T ss_pred HHHHHHHHHhCCcccc-------eeeecccccchHHHHHHHHHHhc-------C-Ccceeecccccccccchhhcccccc
Confidence 3566777777632112 57899999999999999999763 0 233444455556544444433321
Q ss_pred -------CCCCeEEEecCCCC-------CcccCHHHHHHHHHHHH-HCCCccEEEEeecCCccccccCC----chHHHHH
Q 038818 195 -------DPKNFRAIKTTKSS-------SFTLTPESLQAAIDLDI-QAGLIPLFLCATVGTTAITTVDP----LGPLCDI 255 (486)
Q Consensus 195 -------g~~~v~~v~~d~~~-------~~~~d~~~L~~~l~~~~-~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i 255 (486)
.......++..... ....+.+.++.+..... .....+.+|++.-.....|.+-| +++|.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~l 230 (431)
T d1zoda1 151 GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK 230 (431)
T ss_dssp CCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHH
T ss_pred cccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHH
Confidence 11123344332100 01123344444433221 22334556666665555666655 9999999
Q ss_pred HHHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 256 AKRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 256 ~~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
|++||+.|++|+.+.|+.-....+....-++ ..|.+++. |.+++.+..+.++.+++.. ...... ....
T Consensus 231 c~~~gillI~DEV~tG~gRtG~~~~~~~~gv-~PDi~~~g--K~l~gG~p~~av~~~~~~~-~~~~~~--~~~~------ 298 (431)
T d1zoda1 231 CEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILTLS--KTLGAGLPLAAIVTSAAIE-ERAHEL--GYLF------ 298 (431)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--HHHHTTSSCEEEEECHHHH-HHHHHT--TCCC------
T ss_pred HHhcCceEEeccccccccccccccccccCCC-Ccchhccc--cccccccccceeeeeecch-hhhhcc--cccc------
Confidence 9999999999999987543222222222234 57888774 7777666677777765422 111110 0000
Q ss_pred CCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHH----HHHHhCCCCeE-EecCCCeeEEEEE
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLF----QELVGGDNRFE-IVAPRNFAVVCFR 407 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l----~~~L~~~~~~~-~~~~~~~~~v~f~ 407 (486)
..+....++++.+ ++..+-.+. ..++..++.+++ .+.+++.+-+. +-+. ..++.+.
T Consensus 299 -----------~~T~~g~pl~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~--Glm~~ie 362 (431)
T d1zoda1 299 -----------YTTHVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVRGR--GLLLGVE 362 (431)
T ss_dssp -----------CCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE--TTEEEEE
T ss_pred -----------cCCCCCCcchHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhhhhhhhhcCCCeEEEeec--ceEEEEE
Confidence 0111233444333 344443333 334444444444 44444554332 2111 1234443
Q ss_pred eecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeE-CCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHHh
Q 038818 408 VLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMV-AGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGIL 483 (486)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l~ 483 (486)
+..+.. .....+....++.+.+.++|... ..... .....+|++. ....|++|||+++++|++++++++
T Consensus 363 ~~~~~~------~~~~~~~~~~~i~~~~~~~Gl~~-~~~~~~~~~~~i~l~P-pl~it~~eid~~~~~l~~al~~vl 431 (431)
T d1zoda1 363 IVKDRR------TKEPADGLGAKITRECMNLGLSM-NIVQLPGMGGVFRIAP-PLTVSEDEIDLGLSLLGQAIERAL 431 (431)
T ss_dssp EEEETT------TTEECTTHHHHHHHHHHHTTEEC-CEECCTTSCCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EecCCc------ccCccHHHHHHHHHHHHHhCccc-CeeeecCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHhC
Confidence 322110 01111345567788888888631 11111 2345789886 356788999999999999998764
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.3e-10 Score=114.42 Aligned_cols=312 Identities=10% Similarity=-0.052 Sum_probs=170.5
Q ss_pred HHHHHHHHHHcCCCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHHHHcCC-
Q 038818 116 NIVMDWLGEMLKLPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAAQIAGI- 194 (486)
Q Consensus 116 ~~~~~~l~~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~G~- 194 (486)
.++.+.+.+....+.. ..+++.+||+|+..|+.++|....++.. ..+.+|......|-...-+....|-
T Consensus 89 ~~l~~~l~~~~~~~~~-------~v~f~~sGseA~e~A~k~ar~~~~~~g~---~~~~ii~~~~~yHG~t~~a~~~t~~~ 158 (429)
T d1s0aa_ 89 IELCRKLVAMTPQPLE-------CVFLADSGSVAVEVAMKMALQYWQAKGE---ARQRFLTFRNGYHGDTFGAMSVCDPD 158 (429)
T ss_dssp HHHHHHHHHHSCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHHTC---CCCEEEEETTCCCCSSHHHHTTSCTT
T ss_pred HHHHHHHHhhhccCcc-------eeeeccccccchhhhhhhhhheeecccc---cccEEEEecCCccccchhhhhhcCCc
Confidence 3445667777655433 5788999999999999999976544311 1233444455556554444444432
Q ss_pred ---------CCCCeEEEecCCC-CCccc---CHHHHHHHHHHHHHCCCccEEEEeecCC-ccccccC-C---chHHHHHH
Q 038818 195 ---------DPKNFRAIKTTKS-SSFTL---TPESLQAAIDLDIQAGLIPLFLCATVGT-TAITTVD-P---LGPLCDIA 256 (486)
Q Consensus 195 ---------g~~~v~~v~~d~~-~~~~~---d~~~L~~~l~~~~~~g~~p~~vv~~~gt-t~~G~id-p---l~~I~~i~ 256 (486)
........|.... ..... +.+++++.+... +..+..|++.-.. +..|.+. | +++|.++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc 235 (429)
T d1s0aa_ 159 NSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235 (429)
T ss_dssp TTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHH
T ss_pred cccccccCccccccccccccccccccccchhhhhhhhhhhhhc---CCccceeeecceeccCCCccCCCHHHHHHHHHHH
Confidence 1112233332211 11122 445555544433 3345556665433 3333432 2 89999999
Q ss_pred HHhCceEEeeccccchhccCccchhhhcCCCCCCceeeccccccCCC-CcceEEEeeCchHHHHHhcCC-cccccCccCC
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHFIDGIEGADSFSLNAHKWFFTT-LDCCCLWVKNPNALIKALSTN-PEFLRNKASD 334 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~~p-~~~g~~~~~~~~~~~~~~~~~-~~y~~~~~~~ 334 (486)
++||+.|++|+.+.|+.-...-+....-++ ..|.+++. |.++.. .+.|.++++++- . +.+... ...+
T Consensus 236 ~~~gillI~DEV~tGfGRtG~~~~~~~~~v-~PDi~~~g--K~l~gG~~p~~av~~~~~i-~-~~~~~~~~~~~------ 304 (429)
T d1s0aa_ 236 DREGILLIADEIATGFGRTGKLFACEHAEI-APDILCLG--KALTGGTMTLSATLTTREV-A-ETISNGEAGCF------ 304 (429)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTSSSCCEEEEECHHH-H-HHHHTSTTSSC------
T ss_pred HHcCcceehhhcccccccccccccccccee-cccccccc--cccccccccccchhhHHHH-H-hccCCCCCcce------
Confidence 999999999999987643332222222233 46777764 666433 467777777642 1 222111 1100
Q ss_pred CCCccCCCCccccCCCCCCchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEecCCCeeEEEEEeecC
Q 038818 335 SKQVVDYKDWQITLSRRFRALKLWLVLRSFGVANLRNFLRSHVRMAQLFQELVGGD---NRFEIVAPRNFAVVCFRVLPS 411 (486)
Q Consensus 335 ~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~~~ 411 (486)
....+....++.+.++++.+..-.-++..++..++.++|++.|+++ +.+.=+. -...++++.+..+
T Consensus 305 ----------~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vr-g~Gl~~~~e~~~~ 373 (429)
T d1s0aa_ 305 ----------MHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTHP 373 (429)
T ss_dssp ----------SCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSC
T ss_pred ----------eecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEe-ecccEEEEEecCc
Confidence 0011112344554444444321111245677777888888888654 2221110 0123455655433
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 038818 412 ASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDGI 482 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~l 482 (486)
. ...++.+.+.++|.+ +.+. + ..+|++. ....|++|||+++++|+++++++
T Consensus 374 ~--------------~~~~~~~~~~~~Gl~-~~~~---g-~~i~~~P-pl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 374 V--------------NMAALQKFFVEQGVW-IRPF---G-KLIYLMP-PYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp B--------------CHHHHHHHHHHTTEE-CCCB---T-TEEEECC-CTTCCHHHHHHHHHHHHHHTSSG
T ss_pred c--------------cHHHHHHHHHHCCcE-EEec---C-CEEEEeC-CcCCCHHHHHHHHHHHHHHHHhh
Confidence 1 134567778888864 3221 2 4688876 35678999999999999987664
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.34 E-value=9.1e-12 Score=122.39 Aligned_cols=295 Identities=8% Similarity=-0.033 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHHHHcC-CCCCCccCCCcceEEcCCchHHHHHHHHHHHHHHHHHccccCCCCeEEEecCCCchHHHHHH
Q 038818 111 ATELENIVMDWLGEMLK-LPKSFLFSGTGGGVIQGTTCEAILCTLAAARDQILNEIGRENISRLVVYGSDQTHSALQKAA 189 (486)
Q Consensus 111 ~~~le~~~~~~l~~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 189 (486)
..+|++++++... +.| ...+ ...+++++|+|+++..++.+..... ......+++.|+++.+.+......+
T Consensus 102 ~~~L~~~i~~lh~-~~gna~t~-----~~~IvvG~Gsteli~~~~~AL~~~~---~~~~~~pg~~Vv~~~P~y~~Y~~~~ 172 (425)
T d2hoxa1 102 SFELEKTIKELHE-VVGNAAAK-----DRYIVFGVGVTQLIHGLVISLSPNM---TATPDAPESKVVAHAPFYPVFREQT 172 (425)
T ss_dssp CHHHHHHHHHHHH-HHTCBCCT-----TCEEEEESHHHHHHHHHHHHHSCCT---TTCTTSCCEEEEECSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHh-hhCCCCCC-----CCEEEECCCHHHHHHHHHHHhcccc---ccccCCCCCEEEEecCccccHHHHH
Confidence 3577777666543 444 2111 0148899998988766665542100 0000116788888988888888889
Q ss_pred HHcCCCCCCeEEEecCCCCCcccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCCchHHHHHHHHhCceEEeeccc
Q 038818 190 QIAGIDPKNFRAIKTTKSSSFTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDPLGPLCDIAKRYSIWVHVDAAY 269 (486)
Q Consensus 190 ~~~G~g~~~v~~v~~d~~~~~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idpl~~I~~i~~~~g~~lhvD~a~ 269 (486)
+++|. ....++ +|.+.+++++++. +.+++++.|+||+|.+.. +-.+++++++|.+|
T Consensus 173 ~~~~~---~~~~~~--------~D~~~~~~~~~~~------~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY 228 (425)
T d2hoxa1 173 KYFDK---KGYVWA--------GNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVY 228 (425)
T ss_dssp HHSCB---TTEEEE--------EEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTT
T ss_pred HHcCC---CCCccC--------CCHHHHHhhCCCC------ceEEEEECCCCCCcchhh-------hhhhCCEEEEeccc
Confidence 99887 555554 4555666655543 458999999999998732 12358999999999
Q ss_pred cchhccCccchhhhcCCCCCCceeeccccccC-CCCcceEEEeeCchHHHHHhcCCcccccCccCCCCCccCCCCccccC
Q 038818 270 AGSACICPEFRHFIDGIEGADSFSLNAHKWFF-TTLDCCCLWVKNPNALIKALSTNPEFLRNKASDSKQVVDYKDWQITL 348 (486)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~aDsi~~~~hK~l~-~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 348 (486)
..... .+ +.....=+.+..++.|.++ +..-.|.++++++....+..... .+... ..
T Consensus 229 ~~~~f-~~-----~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~-~~~~~----------------~v 285 (425)
T d2hoxa1 229 YWPHY-TP-----IKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-TKNTE----------------GT 285 (425)
T ss_dssp CSTTT-SC-----CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-HHHTS----------------SC
T ss_pred cCccc-cc-----hhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhh-ccCcc----------------cC
Confidence 54321 11 1111233567788999998 44569999998876644322111 11000 00
Q ss_pred CCCCCchHHHHHHHH----------hchHHHHHHHHHHHHHHHHHHHHHhCCCCeEEecCCCee--------------EE
Q 038818 349 SRRFRALKLWLVLRS----------FGVANLRNFLRSHVRMAQLFQELVGGDNRFEIVAPRNFA--------------VV 404 (486)
Q Consensus 349 sr~~~~l~~~~~l~~----------~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~--------------~v 404 (486)
+ ....+++..+++. ...+-++...+...+..+++.+.|.+.+.+.+...|... ..
T Consensus 286 s-~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~ 364 (425)
T d2hoxa1 286 P-RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYA 364 (425)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEE
T ss_pred C-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCccee
Confidence 0 0111111122211 123345556667777788899999888666543222211 12
Q ss_pred EEEeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeEC-CEeEEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 038818 405 CFRVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVA-GIYFIRFAVGATLTEDRHVIAAWKVVQEKLD 480 (486)
Q Consensus 405 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~lR~~~~~~~tt~~did~~i~~l~~~~~ 480 (486)
.+++... . . ..+.+.|.+.|++..++..+. +.+++|+++. +++++++++++.|+++++
T Consensus 365 wl~~~~~----------~--~---~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~---~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 365 WVKCEWE----------E--D---KDCYQTFQNGRINTQNGVGFEASSRYVRLSLI---KTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp EEEECSG----------G--G---CSHHHHHHHTTEECEEGGGGTSCTTEEEEECS---SCHHHHHHHHHHHHHHHT
T ss_pred eeeCCCC----------h--H---HHHHHHHHhCCEEEEechhcCCCCCEEEEEec---CCHHHHHHHHHHHHHHHh
Confidence 2222211 0 1 123344567788766655553 3579999984 467799999999998875
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.25 E-value=6.3e-10 Score=110.61 Aligned_cols=290 Identities=11% Similarity=0.038 Sum_probs=162.8
Q ss_pred ceEEcCCchHHHHHHHHHHHHHHHHHc-c----------------ccCCCCeEEE-ecCCCchHHHHHHHHcCC------
Q 038818 139 GGVIQGTTCEAILCTLAAARDQILNEI-G----------------RENISRLVVY-GSDQTHSALQKAAQIAGI------ 194 (486)
Q Consensus 139 ~~~~t~ggt~a~~~al~~a~~~~~~~~-~----------------~~~~~~~~v~-~s~~~H~s~~~a~~~~G~------ 194 (486)
..+++++||+|+..|+.+||.....+. + ..+.++..|+ .....|-....+....|-
T Consensus 119 ~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~ 198 (461)
T d1ohwa_ 119 QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKI 198 (461)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHT
T ss_pred eeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccc
Confidence 578999999999999999987543221 0 1122333444 455566554444444432
Q ss_pred --CCCCeEEEecCCC-CC-----------cccCHHHHHHHHHHHHHCCCccEEEEeecCCccccccCC----chHHHHHH
Q 038818 195 --DPKNFRAIKTTKS-SS-----------FTLTPESLQAAIDLDIQAGLIPLFLCATVGTTAITTVDP----LGPLCDIA 256 (486)
Q Consensus 195 --g~~~v~~v~~d~~-~~-----------~~~d~~~L~~~l~~~~~~g~~p~~vv~~~gtt~~G~idp----l~~I~~i~ 256 (486)
+.......|.... .. ...+.+++++++.........+.+|++.-.....|.+-| +++|.++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc 278 (461)
T d1ohwa_ 199 DIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIS 278 (461)
T ss_dssp TCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHH
T ss_pred cccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHH
Confidence 1001111221110 00 012456777777765555556667887777766676644 89999999
Q ss_pred HHhCceEEeeccccchhccCccchhhhcCCC-CCCceeeccccccCCCCcceEEEeeCchHHHHHhcCCcccccCccCCC
Q 038818 257 KRYSIWVHVDAAYAGSACICPEFRHFIDGIE-GADSFSLNAHKWFFTTLDCCCLWVKNPNALIKALSTNPEFLRNKASDS 335 (486)
Q Consensus 257 ~~~g~~lhvD~a~g~~~~~~~~~~~~~~~~~-~aDsi~~~~hK~l~~p~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 335 (486)
++||+.|++|+++.|+.....-+....-+++ ..|.++++ |.++ .|.+..... +....++.
T Consensus 279 ~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~----~g~~~~~~~------~~~~~~~~------- 339 (461)
T d1ohwa_ 279 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMM----TGGFFHKEE------FRPNAPYR------- 339 (461)
T ss_dssp HHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGS----SEEEEECGG------GSCSSTTS-------
T ss_pred HhhCcceeccccccccccccccccccccccccCchhhhhh--hccc----ccccccccc------cccccccc-------
Confidence 9999999999999775422211222122343 47888764 5543 344444321 11111111
Q ss_pred CCccCCCCccccCCCCCCchHHHH---HHHHhchHHHHHHHHHHHHHHHHHHHHHhC----CCC-e-EEecCCCeeEEEE
Q 038818 336 KQVVDYKDWQITLSRRFRALKLWL---VLRSFGVANLRNFLRSHVRMAQLFQELVGG----DNR-F-EIVAPRNFAVVCF 406 (486)
Q Consensus 336 ~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~~-~-~~~~~~~~~~v~f 406 (486)
...+-....+.+.+ +++.+-.+ +.+++..++.++|.+.|++ .|. + ++-+ ...++.+
T Consensus 340 ----------~~~T~~g~p~~~aaa~a~l~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG--~Gl~~~i 404 (461)
T d1ohwa_ 340 ----------IFNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSF 404 (461)
T ss_dssp ----------SCCSCSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEE
T ss_pred ----------cccccccccccchhhcccchhhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEeee--eeEEEEE
Confidence 01111223344434 44444333 3455566666666666654 343 2 2211 1224555
Q ss_pred EeecCCCCCCCCCCccchHHHHHHHHHHHHhcCcEEEeeeeECCEeEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 038818 407 RVLPSASGLGDGKANEGANELNRKLLESINASGQLYVSHGMVAGIYFIRFAVGATLTEDRHVIAAWKVVQEKLDG 481 (486)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lR~~~~~~~tt~~did~~i~~l~~~~~~ 481 (486)
.+.. .....++.+.+.++|.++ .+. +...||+.. ....|++|||.+++.|++++.+
T Consensus 405 e~~~--------------~~~~~~i~~~~~~~Gll~-~~~---~~~~ir~~P-pL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 405 DTPD--------------ESIRNKLISIARNKGVML-GGC---GDKSIRFRP-TLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp ECSS--------------HHHHHHHHHHHHHTTEEC-EEE---TTTEEECCC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred EcCC--------------HHHHHHHHHHHHHCCeEE-eeC---CCCEEEEeC-CcCCCHHHHHHHHHHHHHHHhc
Confidence 5532 456678888898999743 222 235789876 4567899999999999998865
|