Citrus Sinensis ID: 038825

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-----
MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPLH
ccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccc
ccHHHHHHHcccHHHHHHHHHHcccHHHHHccccccEEEEEEHcccccHHHHHcccccHHHHccccccccccccc
MTALLVATSQGHASLVGTIIShypkcydlvddtgwNVLHFLTVSLYAYELNCLLKDLLFKnlidekdvkgntplh
MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNlidekdvkgntplh
MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPLH
****LVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLID***********
MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPLH
MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPLH
MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDE**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
SSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
356510752 629 PREDICTED: ankyrin-2-like [Glycine max] 0.986 0.117 0.405 2e-09
255551947 582 ankyrin repeat-containing protein, putat 0.986 0.127 0.405 3e-09
297745196 200 unnamed protein product [Vitis vinifera] 1.0 0.375 0.415 8e-09
147790979 1398 hypothetical protein VITISV_003041 [Viti 0.986 0.052 0.407 3e-08
297745200 579 unnamed protein product [Vitis vinifera] 1.0 0.129 0.402 3e-08
224127079 394 predicted protein [Populus trichocarpa] 0.986 0.187 0.445 3e-08
224127106 575 predicted protein [Populus trichocarpa] 0.986 0.128 0.445 4e-08
359478071 725 PREDICTED: ankyrin repeat-containing pro 0.986 0.102 0.407 4e-08
359478091 637 PREDICTED: ankyrin-1-like [Vitis vinifer 0.986 0.116 0.428 9e-08
297737161 487 unnamed protein product [Vitis vinifera] 0.986 0.151 0.405 9e-08
>gi|356510752|ref|XP_003524098.1| PREDICTED: ankyrin-2-like [Glycine max] Back     alignment and taxonomy information
 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query: 2   TALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKN 61
           TAL +A       +V  II +YP C ++VD+ GWN LH+         +  ++++L   N
Sbjct: 304 TALHIAADSDSRRIVKMIIKYYPDCSEIVDNKGWNALHYAVNGGKQNTIRRIMRNLYLSN 363

Query: 62  LIDEKDVKGNTPLH 75
           L +EKDV GNTPLH
Sbjct: 364 LYNEKDVDGNTPLH 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297745196|emb|CBI39188.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147790979|emb|CAN70274.1| hypothetical protein VITISV_003041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745200|emb|CBI39192.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478071|ref|XP_002269632.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737161|emb|CBI26362.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
TAIR|locus:2020833 616 AT1G03670 "AT1G03670" [Arabido 0.986 0.120 0.283 4.8e-05
TAIR|locus:2128781 677 AT4G03460 "AT4G03460" [Arabido 0.92 0.101 0.324 0.00024
TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 107 (42.7 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 21/74 (28%), Positives = 41/74 (55%)

Query:     2 TALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKN 61
             T + +A  +GH  ++   + H P   +L+++   N+ H   ++  +  +  LLK    K 
Sbjct:   289 TPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKR 348

Query:    62 LIDEKDVKGNTPLH 75
             +++E+D+ GNTPLH
Sbjct:   349 MMNEQDINGNTPLH 362
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01200029
hypothetical protein (394 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0017001601
hypothetical protein (522 aa)
  •     0.459
eugene3.00051263
annotation not avaliable (398 aa)
  •     0.445
fgenesh4_pg.C_LG_I003169
hypothetical protein (278 aa)
  •     0.439
grail3.0022009901
hypothetical protein (328 aa)
  •     0.413
gw1.I.2074.1
annotation not avaliable (128 aa)
  •     0.410
eugene3.00051320
SubName- Full=Auxin-regulated protein-like protein; (261 aa)
  •     0.407
grail3.0022009801
hypothetical protein (109 aa)
  •     0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query75
cd00204126 cd00204, ANK, ankyrin repeats; ankyrin repeats med 0.002
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information 
 Score = 33.5 bits (77), Expect = 0.002
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 1   MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFK 60
            T L +A   GH  +V  ++       +  D  G   LH    +     +  LLK     
Sbjct: 41  RTPLHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLK---HG 96

Query: 61  NLIDEKDVKGNTPLH 75
             ++ +D  G TPLH
Sbjct: 97  ADVNARDKDGRTPLH 111

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 75
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.88
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.87
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.82
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.8
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.79
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.79
PHA02878 477 ankyrin repeat protein; Provisional 99.79
PHA02743166 Viral ankyrin protein; Provisional 99.78
PHA02741169 hypothetical protein; Provisional 99.78
PHA02884 300 ankyrin repeat protein; Provisional 99.78
KOG4214117 consensus Myotrophin and similar proteins [Transcr 99.77
PHA02875 413 ankyrin repeat protein; Provisional 99.77
PHA02791 284 ankyrin-like protein; Provisional 99.77
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.77
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.76
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.75
PHA02791 284 ankyrin-like protein; Provisional 99.75
PHA02874 434 ankyrin repeat protein; Provisional 99.75
PHA02741169 hypothetical protein; Provisional 99.74
PHA02859209 ankyrin repeat protein; Provisional 99.74
PHA02736154 Viral ankyrin protein; Provisional 99.73
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 99.73
PHA02795 437 ankyrin-like protein; Provisional 99.73
KOG0514452 consensus Ankyrin repeat protein [General function 99.73
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 99.73
PHA03095 471 ankyrin-like protein; Provisional 99.72
KOG0508 615 consensus Ankyrin repeat protein [General function 99.72
PHA02874 434 ankyrin repeat protein; Provisional 99.72
PHA02946 446 ankyin-like protein; Provisional 99.72
PHA03095 471 ankyrin-like protein; Provisional 99.72
PHA02875 413 ankyrin repeat protein; Provisional 99.72
PHA02878 477 ankyrin repeat protein; Provisional 99.71
PHA03100 480 ankyrin repeat protein; Provisional 99.7
PLN03192 823 Voltage-dependent potassium channel; Provisional 99.7
PHA02859209 ankyrin repeat protein; Provisional 99.7
PHA02884 300 ankyrin repeat protein; Provisional 99.69
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 99.68
PHA02946 446 ankyin-like protein; Provisional 99.68
PLN03192 823 Voltage-dependent potassium channel; Provisional 99.68
PHA03100 480 ankyrin repeat protein; Provisional 99.68
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 99.67
PHA02876 682 ankyrin repeat protein; Provisional 99.65
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 99.65
PHA02798 489 ankyrin-like protein; Provisional 99.64
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.64
KOG0510 929 consensus Ankyrin repeat protein [General function 99.64
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.64
KOG0510 929 consensus Ankyrin repeat protein [General function 99.63
PHA02743166 Viral ankyrin protein; Provisional 99.63
PHA02730 672 ankyrin-like protein; Provisional 99.63
PHA02989 494 ankyrin repeat protein; Provisional 99.62
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.62
KOG0508 615 consensus Ankyrin repeat protein [General function 99.61
PHA02917 661 ankyrin-like protein; Provisional 99.6
PHA02798 489 ankyrin-like protein; Provisional 99.6
PHA02989 494 ankyrin repeat protein; Provisional 99.59
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 99.58
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 99.57
PHA02876 682 ankyrin repeat protein; Provisional 99.56
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.56
KOG0514452 consensus Ankyrin repeat protein [General function 99.55
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.54
PHA02736154 Viral ankyrin protein; Provisional 99.53
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.53
PHA02917 661 ankyrin-like protein; Provisional 99.53
PHA02792 631 ankyrin-like protein; Provisional 99.53
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.52
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 99.51
PHA02795 437 ankyrin-like protein; Provisional 99.48
KOG0515 752 consensus p53-interacting protein 53BP/ASPP, conta 99.48
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.47
KOG4214117 consensus Myotrophin and similar proteins [Transcr 99.46
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 99.46
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 99.45
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.45
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.44
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.43
PHA02730 672 ankyrin-like protein; Provisional 99.43
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 99.38
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.38
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.38
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.36
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 99.34
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.32
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 99.32
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.32
PHA02792 631 ankyrin-like protein; Provisional 99.29
PF1360630 Ank_3: Ankyrin repeat 99.28
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 99.26
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 99.26
PF1360630 Ank_3: Ankyrin repeat 99.19
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.18
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.15
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 99.13
KOG0511 516 consensus Ankyrin repeat protein [General function 99.0
KOG0522 560 consensus Ankyrin repeat protein [General function 98.97
KOG0521785 consensus Putative GTPase activating proteins (GAP 98.83
KOG0522 560 consensus Ankyrin repeat protein [General function 98.8
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.77
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 98.77
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 98.75
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 98.75
KOG2384 223 consensus Major histocompatibility complex protein 98.56
KOG0705749 consensus GTPase-activating protein Centaurin gamm 98.48
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.29
KOG2505 591 consensus Ankyrin repeat protein [General function 98.28
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.19
KOG2505591 consensus Ankyrin repeat protein [General function 98.09
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 97.94
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 97.87
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 97.71
KOG0520 975 consensus Uncharacterized conserved protein, conta 97.7
KOG2384 223 consensus Major histocompatibility complex protein 97.64
KOG0520 975 consensus Uncharacterized conserved protein, conta 97.64
KOG0521785 consensus Putative GTPase activating proteins (GAP 97.28
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 97.15
KOG0511 516 consensus Ankyrin repeat protein [General function 96.38
PF1192976 DUF3447: Domain of unknown function (DUF3447); Int 96.21
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 94.77
PF06128284 Shigella_OspC: Shigella flexneri OspC protein; Int 94.69
PF03158192 DUF249: Multigene family 530 protein; InterPro: IP 94.21
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 90.52
KOG3836 605 consensus HLH transcription factor EBF/Olf-1 and r 84.43
KOG4591280 consensus Uncharacterized conserved protein, conta 83.99
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.88  E-value=3.2e-23  Score=99.82  Aligned_cols=69  Identities=28%  Similarity=0.363  Sum_probs=27.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhh-CCCccccccCCCchHHHHHHHhCcHHHHHHHHhchhhhhccccCCCCCCCCC
Q 038825            2 TALLVATSQGHASLVGTIISH-YPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPL   74 (75)
Q Consensus         2 t~lh~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~tpl   74 (75)
                      ||||+|+..|+.++|+.|+.+ +++. +.....|.|+||||+-.+..++.++|++.   |+.++.+|+.|+|||
T Consensus        74 tPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~---ga~i~~kD~~~qtpl  143 (226)
T KOG4412|consen   74 TPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEK---GALIRIKDKQGQTPL  143 (226)
T ss_pred             chhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhc---CCCCcccccccCchh
Confidence            344444444444444444433 3332 33333344444444444444444444443   344444444444443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC Back     alignment and domain information
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query75
2dzn_A 228 Probable 26S proteasome regulatory subunit P28; an 6e-05
1sw6_A 327 Regulatory protein SWI6; transcription regulation, 6e-05
2etb_A256 Transient receptor potential cation channel subfam 1e-04
3ljn_A 364 Hypothetical protein; ankyrin, structural genomics 2e-04
1n11_A 437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 5e-04
3f6q_A 179 Integrin-linked protein kinase; ILK, integrin-link 8e-04
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 Back     alignment and structure
 Score = 37.8 bits (89), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 1   MTALLVATSQGHASLVGTIISH--YPKCYDLVDDTGWNVLHFLTVSLYAYELNCL--LKD 56
              L  + S     +   ++S        D  DD+GW   H       A  +  L  +K 
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH------IACSVGNLEVVKS 90

Query: 57  LLFKNL---IDEKDVKGNTPLH 75
           L  + L   +++   +G T LH
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLH 112
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query75
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 99.91
4gpm_A169 Engineered protein OR264; de novo protein, structu 99.91
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 99.89
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.88
4gpm_A169 Engineered protein OR264; de novo protein, structu 99.87
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 99.87
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.86
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 99.86
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.86
3deo_A183 Signal recognition particle 43 kDa protein; chloro 99.86
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 99.86
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 99.86
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 99.86
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 99.85
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 99.85
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 99.85
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 99.85
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 99.85
1awc_B153 Protein (GA binding protein beta 1); complex (tran 99.85
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 99.85
1awc_B153 Protein (GA binding protein beta 1); complex (tran 99.85
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 99.85
3jxi_A260 Vanilloid receptor-related osmotically activated p 99.84
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 99.84
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 99.84
2vge_A 229 RELA-associated inhibitor; iaspp, nucleus, apoptos 99.84
3v30_A172 DNA-binding protein rfxank; structural genomics co 99.84
2etb_A256 Transient receptor potential cation channel subfam 99.84
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 99.84
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 99.84
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 99.84
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 99.83
2pnn_A273 Transient receptor potential cation channel subfa 99.83
3v30_A172 DNA-binding protein rfxank; structural genomics co 99.83
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 99.83
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.83
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 99.83
3v31_A167 Ankyrin repeat family A protein 2; structural geno 99.83
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.83
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 99.83
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 99.83
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 99.83
1ycs_B 239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 99.83
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 99.82
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 99.82
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 99.82
2vge_A 229 RELA-associated inhibitor; iaspp, nucleus, apoptos 99.82
3v31_A167 Ankyrin repeat family A protein 2; structural geno 99.82
2xai_A 261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 99.82
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 99.82
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 99.82
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 99.82
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 99.82
2rfa_A232 Transient receptor potential cation channel subfa 99.82
3deo_A183 Signal recognition particle 43 kDa protein; chloro 99.82
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.82
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 99.82
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 99.82
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 99.81
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 99.81
1s70_B 299 130 kDa myosin-binding subunit of smooth muscle my 99.81
3d9h_A 285 CDNA FLJ77766, highly similar to HOMO sapiens anky 99.81
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 99.81
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 99.81
2etb_A256 Transient receptor potential cation channel subfam 99.81
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 99.8
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 99.8
3utm_A 351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 99.8
3ui2_A 244 Signal recognition particle 43 kDa protein, chlor; 99.8
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 99.8
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 99.8
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 99.8
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 99.8
3jxi_A260 Vanilloid receptor-related osmotically activated p 99.8
3ljn_A 364 Hypothetical protein; ankyrin, structural genomics 99.8
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 99.8
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 99.79
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 99.79
3hra_A201 Ankyrin repeat family protein; structural protein; 99.79
3aji_A 231 26S proteasome non-ATPase regulatory subunit 10; g 99.79
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 99.79
3kea_A 285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 99.79
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 99.79
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 99.79
1sw6_A327 Regulatory protein SWI6; transcription regulation, 99.79
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 99.79
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 99.78
2pnn_A273 Transient receptor potential cation channel subfa 99.78
3ljn_A 364 Hypothetical protein; ankyrin, structural genomics 99.78
3hra_A201 Ankyrin repeat family protein; structural protein; 99.78
2rfa_A232 Transient receptor potential cation channel subfa 99.78
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 99.78
1n11_A 437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 99.78
1sw6_A 327 Regulatory protein SWI6; transcription regulation, 99.77
1wdy_A 285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 99.77
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 99.77
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 99.77
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 99.77
3kea_A 285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 99.77
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 99.76
4g8k_A 337 2-5A-dependent ribonuclease; ankyrin-repeat domain 99.76
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 99.74
2fo1_E 373 LIN-12 protein; beta-barrel, protein-DNA complex, 99.74
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.73
3eu9_A 240 Huntingtin-interacting protein 14; epigenetics, an 99.73
1wdy_A 285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 99.72
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 99.72
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.71
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.67
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.65
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 99.64
2aja_A 376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 99.62
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 99.6
2aja_A 376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 99.52
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
Probab=99.91  E-value=1.5e-24  Score=95.48  Aligned_cols=71  Identities=27%  Similarity=0.354  Sum_probs=68.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCccccccCCCchHHHHHHHhCcHHHHHHHHhchhhhhccccCCCCCCCCCC
Q 038825            1 MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPLH   75 (75)
Q Consensus         1 ~t~lh~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~tplh   75 (75)
                      +||||+|+..|+.+++++|++.+.++ +..+..|+||||+|+..++.+++++|++.   |++++.+|..|.||||
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~l~   73 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLH   73 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHH
Confidence            58999999999999999999999987 88899999999999999999999999999   9999999999999986
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 75
d1wdya_285 d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas 1e-05
d1n11a_ 408 d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta 4e-04
d1sw6a_301 d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker 0.001
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-05
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 1   MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFK 60
            TAL+ A  +GH  ++  ++       +  D+ G N L    +S    ++  +   LL  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 61  NL-IDEKDVKGNTPLH 75
              ++ +  +G TPL 
Sbjct: 209 GADVNVRGERGKTPLI 224
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query75
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.9
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.88
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.88
d1n11a_ 408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.86
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.86
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.85
d1oy3d_ 255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.84
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.84
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.83
d2fo1e1 277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.83
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.78
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.78
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.78
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.77
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.77
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1k1aa_ 228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.75
d1ixva_ 229 26S proteasome non-ATPase regulatory subunit 10, g 99.74
d1s70b_ 291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.73
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.73
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.72
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.72
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.72
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.72
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.7
d1iknd_ 221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.69
d1sw6a_ 301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.67
d2ajaa1 346 Hypothetical protein LPG2416 {Legionella pneumophi 99.66
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.65
d2ajaa1 346 Hypothetical protein LPG2416 {Legionella pneumophi 99.64
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.63
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.62
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.61
d1wdya_ 285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.56
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.55
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.6e-24  Score=98.05  Aligned_cols=71  Identities=15%  Similarity=0.038  Sum_probs=54.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCccccccCCCchHHHHHHHhCcHHHHHHHHhchhhhhccccCCCCCCCCCC
Q 038825            1 MTALLVATSQGHASLVGTIISHYPKCYDLVDDTGWNVLHFLTVSLYAYELNCLLKDLLFKNLIDEKDVKGNTPLH   75 (75)
Q Consensus         1 ~t~lh~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~tplh   75 (75)
                      +||||+|+..|+.+++++++..+.++ +..+..|+||||+|+..++.+++++|++.   |++++.+|.+|.||||
T Consensus        36 ~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~~~v~~Ll~~---Gad~~~~d~~G~t~l~  106 (118)
T d1myoa_          36 RKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSK---GADKTVKGPDGLTALE  106 (118)
T ss_dssp             CCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCCHHHHHHHTT---CCCSSSSSSSTCCCCC
T ss_pred             ccccccccccccccccccccccccee-eecccccccchhhhhhcCchhhhhhhhcc---cccceeeCCCCCCHHH
Confidence            46777777777777777777777665 66677788888888888888888888877   7888888888888875
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure