Citrus Sinensis ID: 038838

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPGK
cEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEcccccccEEEEEEEccccccccEEEEEccccEEEEEEEccccccccccccHHHHHHHcccccccccccEEEEEEEcccEEEEEEEcccccccHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccEEEEEEEcccccccccccccccccccHHHHHHHHHcccccEEEEEEEcHHHHHHcccccccccEEEEEEEcccEEEEEEEEEEEccc
ccEEEEEcHHHHHHHHHHHHHHHHHHccEEEEEEcccEEEEEEccccccccEEEEEHHHHHHHHHcEEEcccccEEEEEEcHHHHHHHHHcHHHHEHHEEccccccccccccEEEEEcccEEEEEEEccccccccHHHHHHHcccccccccccccEEEcccHHHHHHHHHHHHccccEEEEEEEcccEEEEEEEccEEEEEEEEccccccccccccccccccccHHHHHHHHHcccccEEEEEEHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEcccc
MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTrekayflpnllsgegIQCVAQFHKEtlfgdyrissQIEDCIAFAIDisllqpgsaancLQIKLvkklppnctqampfltfetkgyksaviqdvpiskplsrAQVLELQTALDMaqdlpptlvqvpdlnQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGekavapsedrnlsaqtrSERAISRGDAQSVQVSVKHFSKSLQCHLAkldcafygiapqVACLTVIFQFFIPGK
mkfkafltengvnllekrflPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEkavapsedrnlsaqtrseraisrgdAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPGK
MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPGK
****AFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEK*****************************VSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFI***
MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQ**************KLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLV****************************AQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPGK
MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVA********************************SKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPGK
*KFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEK*******************ISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPG*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
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MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDISLLQPGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q54NC0271 Checkpoint protein hus1 h yes no 0.623 0.653 0.252 3e-05
O60921280 Checkpoint protein HUS1 O yes no 0.764 0.775 0.226 7e-05
>sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog OS=Dictyostelium discoideum GN=hus1 PE=3 SV=1 Back     alignment and function desciption
 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 33/210 (15%)

Query: 1   MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE 60
           MKFKA +++  + L   + +  + K+   C   +T +K  F+      +G+Q   +  + 
Sbjct: 1   MKFKAKISKASILL---KTVQNIMKIYNECICHITPDKLRFIIQSDFNDGMQVFCEIQRS 57

Query: 61  TLFGDYRISSQIEDCIAFAIDIS----LLQPGSAANCLQIKLVKKLPPNCTQAM--PFLT 114
            +F ++ I S  ++ I F +D+     +LQ  ++        V  +  N T+    P L 
Sbjct: 58  LIFENFTIESLSDNEIQFQLDLESLRRVLQSATSNG------VSDIFTNLTKVRGGPVLH 111

Query: 115 FETKGYKSAVI--QDVPISKPLSRAQVLELQTALDMAQDLPPTL------VQVPDLNQLQ 166
           F  K   S  +  QD+PI           L TA  MAQ   PTL      + +P+L  LQ
Sbjct: 112 FIIKSGTSGTVIFQDIPIV----------LLTAQQMAQINEPTLPDPLVHILLPNLKNLQ 161

Query: 167 NFVDWMKHVGDLVNVSICKYRDLHLQISTT 196
             +D MK++ D + + I     L  ++ T+
Sbjct: 162 KVIDKMKNISDCLKIMIAMNNRLSFEVETS 191
Essential in controlling the S-M checkpoint that couples mitosis to the completion of DNA replication. It is also required for the response to DNA damage.
Dictyostelium discoideum (taxid: 44689)
>sp|O60921|HUS1_HUMAN Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
255553253320 conserved hypothetical protein [Ricinus 0.996 0.884 0.802 1e-131
449436140319 PREDICTED: uncharacterized protein LOC10 0.996 0.887 0.784 1e-128
224128614318 predicted protein [Populus trichocarpa] 0.996 0.889 0.783 1e-126
225442902323 PREDICTED: uncharacterized protein LOC10 0.996 0.876 0.727 1e-124
297743486330 unnamed protein product [Vitis vinifera] 0.996 0.857 0.727 1e-123
297847640319 hypothetical protein ARALYDRAFT_474377 [ 0.996 0.887 0.747 1e-123
5903067344 F6D8.25 [Arabidopsis thaliana] 0.996 0.822 0.740 1e-123
79364243319 HUS1 checkpoint protein [Arabidopsis tha 0.996 0.887 0.740 1e-123
388504714321 unknown [Lotus japonicus] 0.996 0.881 0.709 1e-114
357441627318 Hus1 protein [Medicago truncatula] gi|35 0.996 0.889 0.709 1e-114
>gi|255553253|ref|XP_002517669.1| conserved hypothetical protein [Ricinus communis] gi|223543301|gb|EEF44833.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/298 (80%), Positives = 256/298 (85%), Gaps = 15/298 (5%)

Query: 1   MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE 60
           MKFKAFLTENGV+LLE+RFLP LDKMGKVCHL LTR+ A FL NLLSG+G+Q +AQF KE
Sbjct: 1   MKFKAFLTENGVSLLERRFLPALDKMGKVCHLLLTRDHAIFLHNLLSGDGVQSIAQFCKE 60

Query: 61  TLFGDYRISSQIEDCIAFAIDISLLQ---------------PGSAANCLQIKLVKKLPPN 105
            LF DYRISSQ ED IAF+IDISLLQ                G AAN LQIKLVKKLPPN
Sbjct: 61  ALFDDYRISSQNEDRIAFSIDISLLQRAVRSSVSICNEFGAGGLAANRLQIKLVKKLPPN 120

Query: 106 CTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQL 165
           CTQ MPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQ ALD AQDLP TLVQVPD NQL
Sbjct: 121 CTQPMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQMALDNAQDLPQTLVQVPDFNQL 180

Query: 166 QNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 225
           QN+VD MKH+GDL+NVSI KY DLH+QISTTLITLGAEFRKLLVIG+KA AP+ED+N+SA
Sbjct: 181 QNYVDRMKHIGDLLNVSISKYGDLHMQISTTLITLGAEFRKLLVIGDKAQAPAEDQNVSA 240

Query: 226 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPG 283
           QTRSERA+SRGDAQSVQVSV+HFSKSLQCHLAK DCAFYGI  Q ACLTVIFQFFIPG
Sbjct: 241 QTRSERAVSRGDAQSVQVSVRHFSKSLQCHLAKPDCAFYGIVAQGACLTVIFQFFIPG 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449436140|ref|XP_004135852.1| PREDICTED: uncharacterized protein LOC101207808 [Cucumis sativus] gi|449491049|ref|XP_004158784.1| PREDICTED: uncharacterized LOC101207808 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224128614|ref|XP_002329047.1| predicted protein [Populus trichocarpa] gi|222839718|gb|EEE78041.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225442902|ref|XP_002263600.1| PREDICTED: uncharacterized protein LOC100266426 [Vitis vinifera] gi|147865235|emb|CAN81953.1| hypothetical protein VITISV_014018 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743486|emb|CBI36353.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297847640|ref|XP_002891701.1| hypothetical protein ARALYDRAFT_474377 [Arabidopsis lyrata subsp. lyrata] gi|297337543|gb|EFH67960.1| hypothetical protein ARALYDRAFT_474377 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|5903067|gb|AAD55626.1|AC008016_36 F6D8.25 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79364243|ref|NP_175662.2| HUS1 checkpoint protein [Arabidopsis thaliana] gi|46016023|emb|CAE55212.1| Hus1 protein [Arabidopsis thaliana] gi|332194698|gb|AEE32819.1| HUS1 checkpoint protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388504714|gb|AFK40423.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357441627|ref|XP_003591091.1| Hus1 protein [Medicago truncatula] gi|355480139|gb|AES61342.1| Hus1 protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2035129319 AT1G52530 "AT1G52530" [Arabido 0.996 0.887 0.740 5.3e-111
DICTYBASE|DDB_G0285353271 hus1 "checkpoint clamp complex 0.647 0.678 0.266 1.3e-06
UNIPROTKB|O60921280 HUS1 "Checkpoint protein HUS1" 0.764 0.775 0.234 1.8e-06
UNIPROTKB|F1Q245280 HUS1 "Uncharacterized protein" 0.707 0.717 0.224 3.1e-06
UNIPROTKB|E1BG06280 LOC786788 "Uncharacterized pro 0.753 0.764 0.231 5.4e-06
RGD|1591976281 Hus1 "HUS1 checkpoint homolog 0.735 0.743 0.229 5.5e-06
UNIPROTKB|B4DFI9259 HUS1 "cDNA FLJ57918, highly si 0.690 0.756 0.234 2.2e-05
MGI|MGI:1277962280 Hus1 "Hus1 homolog (S. pombe)" 0.732 0.742 0.224 3.5e-05
UNIPROTKB|I3LBK1206 HUS1 "Uncharacterized protein" 0.633 0.873 0.23 0.00016
UNIPROTKB|Q8JHD8282 Hus1 "PCNA-like DNA checkpoint 0.799 0.804 0.213 0.00018
TAIR|locus:2035129 AT1G52530 "AT1G52530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 220/297 (74%), Positives = 247/297 (83%)

Query:     1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE 60
             MKFKAFLTENGVNLLEKRFLP  DKMGK CHL LT+E  +FL NLL+G+G+QC+AQF K+
Sbjct:     1 MKFKAFLTENGVNLLEKRFLPAFDKMGKNCHLLLTKEHLFFLHNLLNGDGVQCIAQFRKD 60

Query:    61 TLFGDYRISSQIEDCIAFAIDISLL--------------QPGSAANCLQIKLVKKLPPNC 106
              LF DYRISSQ ED IAF++D++LL                G A+N LQIKLVKKLPPNC
Sbjct:    61 VLFDDYRISSQNEDRIAFSLDVALLYRAVKSSVSICTEFSGGLASNRLQIKLVKKLPPNC 120

Query:   107 TQAMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQ 166
             TQ MPFLTFETKGYKSAVIQDVPI+KPLSR+QV+ELQTALD AQDLPPTLVQV D NQLQ
Sbjct:   121 TQPMPFLTFETKGYKSAVIQDVPITKPLSRSQVIELQTALDSAQDLPPTLVQVQDSNQLQ 180

Query:   167 NFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQ 226
             NFVD M+HVGD++NV+I K+ DL +Q+STTLI LG EF++L VIGEK+ AP EDRNLSAQ
Sbjct:   181 NFVDHMRHVGDVLNVTISKHGDLQVQVSTTLIRLGIEFQRLSVIGEKSQAPVEDRNLSAQ 240

Query:   227 TRSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLTVIFQFFIPG 283
              RSERAI+RGDAQSVQVSVKHFSKSLQCHL K D  FYGIAPQ ACLTVIFQF +PG
Sbjct:   241 ARSERAIARGDAQSVQVSVKHFSKSLQCHLTKPDSTFYGIAPQGACLTVIFQFMVPG 297
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
DICTYBASE|DDB_G0285353 hus1 "checkpoint clamp complex protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|O60921 HUS1 "Checkpoint protein HUS1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q245 HUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BG06 LOC786788 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1591976 Hus1 "HUS1 checkpoint homolog (S. pombe)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B4DFI9 HUS1 "cDNA FLJ57918, highly similar to Checkpoint protein HUS1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1277962 Hus1 "Hus1 homolog (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LBK1 HUS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8JHD8 Hus1 "PCNA-like DNA checkpoint protein Hus1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00970012
hypothetical protein (318 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
pfam04005287 pfam04005, Hus1, Hus1-like protein 3e-78
>gnl|CDD|217839 pfam04005, Hus1, Hus1-like protein Back     alignment and domain information 
 Score =  238 bits (610), Expect = 3e-78
 Identities = 88/298 (29%), Positives = 133/298 (44%), Gaps = 28/298 (9%)

Query: 1   MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKE 60
           MKF+A +T+        R L  L K+GK C L LT EK  F+ N  + +G+Q   Q   +
Sbjct: 1   MKFRAKITDI---ETLTRVLSTLSKLGKFCVLRLTPEKLRFIINGSANDGVQVWCQLPVD 57

Query: 61  TLFGDYRISSQIEDCIAFAIDISLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFE 116
            +F +Y+I S  E+ I   +D+  L         A+ L+I+L KK         P L  E
Sbjct: 58  LIFDEYQIESNSENEINLEVDLDNLLRALKSADNASSLKIRLTKKDR------TPCLALE 111

Query: 117 TKGYKS-----AVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDW 171
             G  S      V  D+P+ K L R++V +LQ  L    D+    + +P L QL+N VD 
Sbjct: 112 ISGTSSSEGSRVVTHDIPV-KVLPRSEVEDLQEPLVPDPDVS---IYLPPLKQLKNVVDR 167

Query: 172 MKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSER 231
           MK++ DLV +S   + +L+L + T L+T+   +  L            D  LSA T S+ 
Sbjct: 168 MKNLSDLVTISANMHGELNLVVETDLVTVTTHWSGLENPPLDPAELDLDSELSASTGSDD 227

Query: 232 AISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVAC------LTVIFQFFIPG 283
                +  SV+V +K  +K L             I  + A         V   ++IP 
Sbjct: 228 DRDPDEEASVRVDIKKLAKFLSVGQLSPSKVVACIVHEHALILYVLDEDVSLTYYIPA 285

Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control. Length = 287

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
PF04005292 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, 100.0
KOG3999284 consensus Checkpoint 9-1-1 complex, HUS1 component 100.0
cd00577248 PCNA Proliferating Cell Nuclear Antigen (PCNA) dom 99.28
PLN00057263 proliferating cell nuclear antigen; Provisional 99.16
TIGR00590259 pcna proliferating cell nuclear antigen (pcna). Al 99.08
PTZ00113275 proliferating cell nuclear antigen; Provisional 98.97
PHA03383262 PCNA-like protein; Provisional 98.95
PTZ00483264 proliferating cell nuclear antigen; Provisional 98.59
PRK01115247 DNA polymerase sliding clamp; Validated 98.19
PF02144275 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IP 98.14
KOG1636260 consensus DNA polymerase delta processivity factor 97.69
PF00705127 PCNA_N: Proliferating cell nuclear antigen, N-term 97.67
PF04139252 Rad9: Rad9; InterPro: IPR007268 Rad9 is required f 96.59
PF02747128 PCNA_C: Proliferating cell nuclear antigen, C-term 95.41
PF02747128 PCNA_C: Proliferating cell nuclear antigen, C-term 88.29
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast Back     alignment and domain information 
Probab=100.00  E-value=2.5e-72  Score=521.10  Aligned_cols=271  Identities=30%  Similarity=0.444  Sum_probs=195.8

Q ss_pred             CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEE
Q 038838            1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAI   80 (284)
Q Consensus         1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~   80 (284)
                      |||||++.|   +.+|++++++++||+|.|||||||++++||+++++++|+|+||+++++.+|++|+|||.++|+|+||+
T Consensus         1 MKFka~i~~---~~~~~~~~~~~~kl~k~~vlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~~F~~y~i~s~~~N~I~le~   77 (292)
T PF04005_consen    1 MKFKATISD---IKLFKKFVSTISKLGKRCVLRLTPERLHFISTSDDSDGIQVWCELPQDSLFSEYRIQSASENEIYLEV   77 (292)
T ss_dssp             -EEEEEEE----HHHHHHHHHHHHHH-SEEEEEE-SSEEEEEEE-SSTT--EEEEEEEGGGT-SEEEEE-SSSS-EEEEE
T ss_pred             CcceEEecC---HHHHHHHHHHHHHhhCEEEEEEeCCEEEEEEecCCCCeEEEEEEEChhhcCcccEEEeCCCCEEEEEE
Confidence            999999999   45559999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             eccccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEec-----ceeEEEEeccCCcccCHHHHhhhhhhhhccCC
Q 038838           81 DISLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKG-----YKSAVIQDVPISKPLSRAQVLELQTALDMAQD  151 (284)
Q Consensus        81 ~~~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g-----~~~~v~hdIPV~kvl~~~~~~~~~eP~~~~~~  151 (284)
                      ++++|+    ++.+|++++|||+||+      ++|||+|++++     .++.|+|||||+ |+++++|++|+||.+   +
T Consensus        78 ~~~~L~raLrs~~~a~~~~ikL~kk~------~~p~L~~~~~~~~~~~~~~~v~hdiPV~-vl~~~~~~~~~eP~~---~  147 (292)
T PF04005_consen   78 NIDSLLRALRSADNASSVKIKLTKKG------RMPCLSFEITGTSSSGRSRIVVHDIPVR-VLPRREWEELQEPMV---P  147 (292)
T ss_dssp             EHHHHHHHHCTCSSCSEEEEEEE-S-------SSSEEEEEEEE--SSST-EEEEEEEEBE-E--GGGGGGGS--------
T ss_pred             cHHHHHHHHHhhccCceeEEehhhcc------CCcEEEEEEEeeccCCCccEEEEECCeE-ecCHHHHHHhhhccc---C
Confidence            999999    5667889999999996      48999999974     457999999996 999999999999987   7


Q ss_pred             CCCeEEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCC----Cccccccccc
Q 038838          152 LPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAP----SEDRNLSAQT  227 (284)
Q Consensus       152 ~p~~~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~----~~~~~~~~~~  227 (284)
                      .|+++|+||++++|++++||||++|++++|+||++|+|+|.|++|.++|+|+|+||.+++..+++.    ..++.....+
T Consensus       148 ~~dv~i~LP~l~~l~~~veR~k~~s~~v~i~an~~G~L~L~v~t~~~~v~t~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  227 (292)
T PF04005_consen  148 DPDVSIYLPPLKQLRSIVERMKNLSDYVTISANMNGELRLSVETDSVSVETEFRGLENPPLDPAELNTVDQLPSEDDSDS  227 (292)
T ss_dssp             --SEEEE-S-HHHHHHHHHHHHTT-SEEEEEE-SSS-EEEEEE-SSEEEEEEE-S------------------------S
T ss_pred             CCCEEEECCCHHHHHHHHHHHhccCceEEEEEECCCcEEEEEEeCcEEEEEEECCCCCCccccccccccccccccccccc
Confidence            899999999999999999999999999999999999999999999999999999999987644311    1111111112


Q ss_pred             hhhhhcCCCCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE-------EEEEEEecCC
Q 038838          228 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT-------VIFQFFIPGK  284 (284)
Q Consensus       228 r~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~-------~~l~y~iP~~  284 (284)
                      ...++.+++++++|+||+|+|++||++++++|.+++|+|.|++++++       ++|+|||||.
T Consensus       228 ~~~~~~~~~~~~sV~Vd~K~~~~~l~~~~~~p~~vi~~I~~~~~~vl~~~~~~~~~l~yyip~~  291 (292)
T PF04005_consen  228 DQQEERDPEEFASVRVDIKDLAKFLKSHQLSPSRVICCICHNKALVLHVYLDEDVSLTYYIPAV  291 (292)
T ss_dssp             SSSS-------EEEEEEHHHHHHHHHH--S--SEEEEEEETTTEEEEEEEE-TTEEEEEEEE--
T ss_pred             cccccCCCCcEEEEEEEHHHHHHhhCccccCCCEEEEEEccCCeEEEEEEEcCCEEEEEEEecc
Confidence            22233456689999999999999999999999999999999999988       5699999985

These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea Back     alignment and domain information
>PLN00057 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>TIGR00590 pcna proliferating cell nuclear antigen (pcna) Back     alignment and domain information
>PTZ00113 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PHA03383 PCNA-like protein; Provisional Back     alignment and domain information
>PTZ00483 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PRK01115 DNA polymerase sliding clamp; Validated Back     alignment and domain information
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus Back     alignment and domain information
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair] Back     alignment and domain information
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage Back     alignment and domain information
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3g65_C280 Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna D 5e-06
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage Checkpoint Complex Length = 280 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 13/230 (5%)
Query: 1   MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYF-LPNLLSGEGIQCVAQFHK 59
           MKF+A + +        R   ++ K+ K C L ++ +K  F L + L+  G+    +  +
Sbjct: 1   MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 60
Query: 60  ETLFGDYRISSQIEDCIAFAIDIS------LLQPGSAANCLQIKLVKKLPPNCTQAMPFL 113
           E  F ++++     +     ++++       L+    A  L+IKL  K  P  T ++  L
Sbjct: 61  ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELL 120
Query: 114 TFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMK 173
           +  +      V  D+PI K + R    +LQ  +    D P   + +P L  +++ V+ MK
Sbjct: 121 SMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPV--VPD-PDVSIYLPVLKTMKSVVEKMK 174
Query: 174 HVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNL 223
           ++ + + +      +L+L+I T L+ +   F+ L      + +  EDRN+
Sbjct: 175 NISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNV 224

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 8e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Length = 281 Back     alignment and structure
 Score =  188 bits (478), Expect = 8e-59
 Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 31/296 (10%)

Query: 1   MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPN-LLSGEGIQCVAQFHK 59
           MKF+A + +        R   ++ K+ K C L ++ +K  F+    L+  G+    +  +
Sbjct: 2   MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 61

Query: 60  ETLFGDYRIS--SQIEDCIAFAIDISLL----QPGSAANCLQIKLVKKLPPNCTQAMPFL 113
           E  F ++++   S   + I   +    L    +    A  L+IKL  K  P  T ++  L
Sbjct: 62  ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELL 121

Query: 114 TFETKGYKSAVIQDVPISKPLSRAQVLELQTALDMAQDLPPTLVQVPDLNQLQNFVDWMK 173
           +  +      V  D+PI K + R    +LQ  +    D+    + +P L  +++ V+ MK
Sbjct: 122 SMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPVVPDPDV---SIYLPVLKTMKSVVEKMK 175

Query: 174 HVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAI 233
           ++ + + +      +L+L+I T L+ +   F+ L      + +  EDRN+          
Sbjct: 176 NISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMA------ 229

Query: 234 SRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACL------TVIFQFFIPG 283
                  V + ++   + L         A   I              V  Q+FIP 
Sbjct: 230 ------EVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPA 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 100.0
1plq_A258 Proliferating cell nuclear antigen (PCNA); DNA-bin 99.7
1u7b_A261 PCNA, cyclin, proliferating cell nuclear antigen; 99.68
2zvv_A276 PCNA 1, proliferating cellular nuclear antigen 1; 99.66
1iz5_A249 Proliferating cell nuclear antigen; DNA, replicati 99.63
3aiz_C246 DNA polymerase sliding clamp C; protein-protein co 99.55
3aiz_A248 DNA polymerase sliding clamp B; protein-protein co 99.47
3lx2_A259 DNA polymerase sliding clamp 2; PCNA, DNA processi 99.44
2ijx_A244 DNA polymerase sliding clamp A; PCNA3 subunit, pro 99.38
1ud9_A245 DNA polymerase sliding clamp A; DNA-binding, DNA r 99.37
1rwz_A245 DNA polymerase sliding clamp; torus, processivity 99.32
3fds_D245 DNA polymerase sliding clamp C; protein-protein co 99.08
3fds_C249 DNA polymerase sliding clamp B; protein-protein co 99.04
3a1j_C263 Cell cycle checkpoint protein RAD1; DNA damage, DN 99.0
3k4x_A 798 PCNA, proliferating cell nuclear antigen; DNA repl 98.98
3p91_A265 Proliferating cell nuclear antigen; DNA binding pr 98.95
3k4x_A798 PCNA, proliferating cell nuclear antigen; DNA repl 98.83
3ifv_A247 PCNA; processivity factor, sliding clamp, halophil 98.72
3a1j_A266 Cell cycle checkpoint control protein RAD9A; DNA d 98.65
3g65_A296 Cell cycle checkpoint control protein RAD9A; PCNA, 97.38
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Back     alignment and structure
Probab=100.00  E-value=6.3e-58  Score=421.19  Aligned_cols=261  Identities=21%  Similarity=0.318  Sum_probs=231.6

Q ss_pred             CeeeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccC-CCCceEEEEEEccCCCcCceEeeec--CCCeEE
Q 038838            1 MKFKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLL-SGEGIQCVAQFHKETLFGDYRISSQ--IEDCIA   77 (284)
Q Consensus         1 MkFrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~-~~~g~qvW~~l~~~~~F~~y~i~S~--~~N~I~   77 (284)
                      |||||++.|.+++.+|+++++++++|+|.|+++|+|+.++|++.++ .++|+|+||.+.++.+|++|+|+|.  ++|+|+
T Consensus         2 MkF~a~l~~~~~~~~lkki~~ai~~L~k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~   81 (281)
T 3a1j_B            2 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIY   81 (281)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHHHHHCSEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEE
T ss_pred             ceEEEEecCcchHHHHHHHHHHHHHHhCEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEE
Confidence            9999999999877788999999999999999999999999999764 4589999999999999999999965  589999


Q ss_pred             EEEeccccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEe-----cceeEEEEeccCCcccCHHHHhhhhhhhhc
Q 038838           78 FAIDISLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETK-----GYKSAVIQDVPISKPLSRAQVLELQTALDM  148 (284)
Q Consensus        78 le~~~~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~-----g~~~~v~hdIPV~kvl~~~~~~~~~eP~~~  148 (284)
                      ||+++++|.    ++.|+++++|||+|++       .|+|+|++.     +.++.++||+||+ +++.++|++|.+|.+ 
T Consensus        82 l~v~~~~L~k~Lk~a~n~~~~~ikL~k~~-------~p~L~fe~~~~~~~~~~~~v~~dipvk-ll~~~~~e~l~~P~~-  152 (281)
T 3a1j_B           82 LELTSENLSRALKTAQNARALKIKLTNKH-------FPCLTVSVELLSMSSSSRIVTHDIPIK-VIPRKLWKDLQEPVV-  152 (281)
T ss_dssp             EEEEHHHHHHHGGGGGGEEEEEEEEECSS-------SCEEEEEEEECCSSSCCCEEEEEEECE-ECCGGGGGGGSCCCC-
T ss_pred             EEEeHHHHHHHHHhcCCCCeEEEEeccCC-------CCEEEEEEEcccCCCCceEEEEEeeeE-EcCHHHHhhcCCCCC-
Confidence            999999999    5678999999999996       499999998     6679999999995 999999999999954 


Q ss_pred             cCCCCCeEEecCChhhHhHHHHhhhhcCCEEEEEEEcCCceEEEEeeccEEEeEEEccCcccccccCCCCccccccccch
Q 038838          149 AQDLPPTLVQVPDLNQLQNFVDWMKHVGDLVNVSICKYRDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTR  228 (284)
Q Consensus       149 ~~~~p~~~i~LP~l~~l~~ivdR~k~ls~~v~i~an~~G~L~L~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~r  228 (284)
                        +.|+++|.||++++|++++||||++|+.|+|+||++|+|+|++++|.++++++|++|.+++.+.      ++++    
T Consensus       153 --~~~dv~i~lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d~~~~~~~~~~l~~~~~~~------~~~~----  220 (281)
T 3a1j_B          153 --PDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLAS------ESTH----  220 (281)
T ss_dssp             --CCCSEEEECCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECSSEEEEEEECCCCCCCC----------------
T ss_pred             --CCCCeEEECCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEeeeEEEEEEEcCCCCCCCCc------cccc----
Confidence              4678899999999999999999999999999999999999999999999999999999765422      1111    


Q ss_pred             hhhhcCCCCeEEEEEechhhhhhcccccccccEEEEEeecCceEEE------EEEEEEecCC
Q 038838          229 SERAISRGDAQSVQVSVKHFSKSLQCHLAKLDCAFYGIAPQVACLT------VIFQFFIPGK  284 (284)
Q Consensus       229 ~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~~~c~I~~~~~~~~------~~l~y~iP~~  284 (284)
                        +..+++++++|+||+|+|.+|+++++++|+.++|+|.+++.+++      +.|+|||||.
T Consensus       221 --~~~~~~~~~sv~~~~k~l~~f~k~~~ls~~v~~~~i~~~~~l~~y~~~~~g~l~yylp~~  280 (281)
T 3a1j_B          221 --EDRNVEHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPAL  280 (281)
T ss_dssp             ------CCCCEEEEEEHHHHHHHHHHCCSCCSEEEEEEETTTEEEEEEESSSCEEEEEEECC
T ss_pred             --cccCCCccEEEEEEHHHHHHhhCcccCCCcEEEEEEeCCceEEEEEeCCcEEEEEEeeec
Confidence              11234479999999999999999999999999999999999887      4499999984
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B Back     alignment and structure
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A* Back     alignment and structure
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A Back     alignment and structure
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A* Back     alignment and structure
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A* Back     alignment and structure
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B* Back     alignment and structure
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* Back     alignment and structure
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2 Back     alignment and structure
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A* Back     alignment and structure
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* Back     alignment and structure
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* Back     alignment and structure
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica} Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A Back     alignment and structure
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A Back     alignment and structure
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1u7ba1126 Proliferating cell nuclear antigen (PCNA) {Human ( 97.65
d1plqa1126 Proliferating cell nuclear antigen (PCNA) {Baker's 97.54
d1iz5a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 97.38
d1rwza1122 Proliferating cell nuclear antigen (PCNA) {Archaeo 97.18
d1ud9a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 96.79
d1iz5a2121 Proliferating cell nuclear antigen (PCNA) {Archaeo 93.3
d1plqa2132 Proliferating cell nuclear antigen (PCNA) {Baker's 93.06
d1u7ba2129 Proliferating cell nuclear antigen (PCNA) {Human ( 90.87
d1ud9a2119 Proliferating cell nuclear antigen (PCNA) {Archaeo 89.22
d1rwza2122 Proliferating cell nuclear antigen (PCNA) {Archaeo 86.64
d1plqa2132 Proliferating cell nuclear antigen (PCNA) {Baker's 85.46
d1u7ba2129 Proliferating cell nuclear antigen (PCNA) {Human ( 85.42
d1iz5a2121 Proliferating cell nuclear antigen (PCNA) {Archaeo 84.85
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00068  Score=52.35  Aligned_cols=111  Identities=12%  Similarity=0.160  Sum_probs=85.6

Q ss_pred             eeEEecccchhhHHHhHHHHHHhcCCeEEEEEeCCEEEEEeccCCCCceEEEEEEccCCCcCceEeeecCCCeEEEEEec
Q 038838            3 FKAFLTENGVNLLEKRFLPVLDKMGKVCHLFLTREKAYFLPNLLSGEGIQCVAQFHKETLFGDYRISSQIEDCIAFAIDI   82 (284)
Q Consensus         3 FrA~i~d~~~~~lf~~~~~~i~kl~K~cvlrlt~~~l~~i~~~~~~~g~qvW~~l~~~~~F~~y~i~S~~~N~I~le~~~   82 (284)
                      |+|+..+.+  .| ++++.+++++-..|.+.++++.+++..-+. +...-+-..++.+ .|++|.++.    .+.+=+++
T Consensus         2 f~~~~~~a~--~f-k~i~~~lk~l~~e~~~~~~~~Gi~iq~mD~-shv~Lv~l~L~~~-~F~~Y~~~~----~~~iGv~~   72 (126)
T d1u7ba1           2 FEARLVQGS--IL-KKVLEALKDLINEACWDISSSGVNLQSMDS-SHVSLVQLTLRSE-GFDTYRCDR----NLAMGVNL   72 (126)
T ss_dssp             EEEEESCTH--HH-HHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GSSEEEESS----CEEEEEEH
T ss_pred             eEEEEccHH--HH-HHHHHHHHHHhceEEEEEcCCeEEEEEECC-CcEEEEEEEECHH-HCceeEEcC----CEEEEEEH
Confidence            899988866  54 899999999999999999999999998653 4667788888888 899999972    46788899


Q ss_pred             cccc----CcCCCceeEEEEeecCCCCCCCCcceEEEEEecc--eeEEEEeccC
Q 038838           83 SLLQ----PGSAANCLQIKLVKKLPPNCTQAMPFLTFETKGY--KSAVIQDVPI  130 (284)
Q Consensus        83 ~~L~----sa~~a~~~~ikL~kk~~~~~~~~~P~Ls~~~~g~--~~~v~hdIPV  130 (284)
                      +.|.    .+.+.+.++|+.....        -.|.+.+++.  ++.....+|.
T Consensus        73 ~~l~kIlk~~~~~d~l~l~~~~~~--------d~l~i~~~~~~~~~~~~f~l~L  118 (126)
T d1u7ba1          73 TSMSKILKCAGNEDIITLRAEDNA--------DTLALVFEAPNQEKVSDYEMKL  118 (126)
T ss_dssp             HHHHHHHTTSCTTCEEEEEECTTC--------SEEEEEEECTTSSCEEEEEEEC
T ss_pred             HHHHHHHhhcCCCCEEEEEEeCCC--------CEEEEEEEcCCCCEEEEEEEEc
Confidence            9988    3445677888764322        4677777643  3555666665
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure