Citrus Sinensis ID: 038858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740
Protein Sequence
MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFCH
Secondary Structure (PSIPRED)
ccccccccEEEccccccccccccccccccccccccEEEccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccEEEccccccEEEcccccccccccccccEEEccccccccccccHHccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEccccEEEccccccccccccccEEEccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccHHHHHHHccccEEEccccccccccHHHHHccccccccccccccccccccHHccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccccHHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHHccccccEEEcccccccccccccccHHcccccccEEEEccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHEEcccccccccccccHHHHccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHHHHccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHcccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccHcccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEHccHccccccccHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mgsfsslntlclmdnnLTEIVTTTTQELhnftnleyltlDFSSLHISLLQSIASIfpslkslsmidckvngvvrsqgfphfksleyLDMNTACIALNASFLQIIGASMPFLKYLSLSYftfgtnssrildqglcplvHLQELHManndlrgslpwclanmtslrtldvssnqltgsisssplilDAYNNEINAeiteshsltapnfqlkslslssgyedgvtfpkflhhqnkledvdlshikmngefpnwllenntkleslslvndslagpfrlpihshkslrlldvsnnnfqgripaeigdilpslssfnismnaldgsipssfgnmnFLQILDlsnnhltgeipehlaigCVNLEILVLSnnnleghmfsknfnltkLSWLLLEDNHFVEEIPQSLSKCLSleglhlnnnnlsgkipqwlgnltglqyiiipenhlegpipvafcqldslqilgisdnnisgslpsylsynrlngsipdrIDGLLRLSHLILAHnnlegevpvqlcglnqlqlldlsdnklhglippcfdntalHERRVLSLLSGIDlscnkligdippqignltrIQTLnlshnnltgtILSTFTnlrhiesldlyhnklngkipcqLVELNALVVFSVAYNnlsgkipemtTQFATfnesnykgnpflcglplpicrspvtmleastsnegddnlidmdcffntftTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVvdnlipirfch
Flexible Loop (DISEMBL)
MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITeshsltapNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFCH
Low Complexity Region (SEG)
MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVqlcglnqlqlldlSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFCH
Disordered region (IsUnstruct)
******LNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE**SLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEA*****GDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFC*
Disordered Region (DISOPRED)
MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGL***************************DCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFC*
Disordered Region (DISEMBL)
MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFCH
Disordered Region (DISPRO)
**SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPIRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	740	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.844	0.499	0.303	7e-59
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.794	0.562	0.306	2e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.927	0.575	0.288	5e-56
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.864	0.512	0.286	2e-55
Q9FL28	1173	LRR receptor-like serine/	no	no	0.709	0.447	0.325	3e-55
Q9LHP4	1141	Receptor-like protein kin	no	no	0.713	0.462	0.312	6e-54
C0LGV1	1135	LRR receptor-like serine/	no	no	0.622	0.406	0.328	3e-53
Q9SYQ8	980	Receptor protein kinase C	no	no	0.666	0.503	0.315	5e-51
O22938	890	Leucine-rich repeat recep	no	no	0.558	0.464	0.343	7e-51
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.678	0.455	0.306	9e-51

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  229 bits (583), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 214/705 (30%), Positives = 344/705 (48%), Gaps = 80/705 (11%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
           G    L TL L DN L   +     E+ N T+L      F+ L+ SL   +  +  +L++
Sbjct: 189 GRLVQLQTLILQDNELEGPIPA---EIGNCTSLALFAAAFNRLNGSLPAELNRL-KNLQT 244

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDM-NTACIALNASFLQIIGASMPFLKYLSLSYFT 120
           L++ D   +G + SQ      S++YL++       L    L      +  L+ L LS   
Sbjct: 245 LNLGDNSFSGEIPSQ-LGDLVSIQYLNLIGNQLQGLIPKRL----TELANLQTLDLS--- 296

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCL-ANMTSLRTLDVSSNQLTGSISS 179
              N + ++ +    +  L+ L +A N L GSLP  + +N TSL+ L +S  QL+G I +
Sbjct: 297 -SNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPA 355

Query: 180 ------SPLILDAYNNEINAEITESHSLTAPNFQLKSLS---LSSGYEDGVTFPKFLHHQ 230
                 S  +LD  NN +  +I +S       FQL  L+   L++   +G T    + + 
Sbjct: 356 EISNCQSLKLLDLSNNTLTGQIPDSL------FQLVELTNLYLNNNSLEG-TLSSSISNL 408

Query: 231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNN 290
             L++  L H  + G+ P  +     KLE + L  +  +G   + I +   L+ +D   N
Sbjct: 409 TNLQEFTLYHNNLEGKVPKEI-GFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGN 467

Query: 291 NFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA 350
              G IP+ IG  L  L+  ++  N L G+IP+S GN + + ++DL++N L+G IP    
Sbjct: 468 RLSGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG 526

Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKL---------------------SWLLLE--D 387
                LE+ ++ NN+L+G++     NL  L                     S+L  +  +
Sbjct: 527 F-LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTE 585

Query: 388 NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
           N F  +IP  L K  +L+ L L  N  +G+IP+  G ++ L  + I  N L G IPV   
Sbjct: 586 NGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELG 645

Query: 448 QLDSLQILGISDNNISGSLPSYL-----------SYNRLNGSIPDRIDGLLRLSHLILAH 496
               L  + +++N +SG +P++L           S N+  GS+P  I  L  +  L L  
Sbjct: 646 LCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDG 705

Query: 497 NNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556
           N+L G +P ++  L  L  L+L +N+L G +P             LS L  + LS N L 
Sbjct: 706 NSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGK--------LSKLFELRLSRNALT 757

Query: 557 GDIPPQIGNLTRIQT-LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN 615
           G+IP +IG L  +Q+ L+LS+NN TG I ST + L  +ESLDL HN+L G++P Q+ ++ 
Sbjct: 758 GEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMK 817

Query: 616 ALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
           +L   +++YNNL GK+ +   QF+ +    + GN  LCG PL  C
Sbjct: 818 SLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 207/676 (30%), Positives = 314/676 (46%), Gaps = 88/676 (13%)

Query: 56  FPSLKSLSMIDCKVN---GVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLK 112
           F SL +L+ +D  +N   G + S  +  F  LEY D+         S  Q++G   P L 
Sbjct: 114 FSSLPNLTFVDLSMNRFSGTI-SPLWGRFSKLEYFDL---------SINQLVGEIPPELG 163

Query: 113 YLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQ 172
            LS                      +L  LH+  N L GS+P  +  +T +  + +  N 
Sbjct: 164 DLS----------------------NLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNL 201

Query: 173 LTGSISSS----------PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT 222
           LTG I SS           L +++ +  I +EI        PN  L+ L L      G  
Sbjct: 202 LTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIG-----NLPN--LRELCLDRNNLTG-K 253

Query: 223 FPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL 282
            P    +   +  +++   +++GE P  +  N T L++LSL  + L GP    + + K+L
Sbjct: 254 IPSSFGNLKNVTLLNMFENQLSGEIPPEI-GNMTALDTLSLHTNKLTGPIPSTLGNIKTL 312

Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
            +L +  N   G IP E+G+ + S+    IS N L G +P SFG +  L+ L L +N L+
Sbjct: 313 AVLHLYLNQLNGSIPPELGE-MESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLS 371

Query: 343 GEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL 402
           G IP  +A     L +L L  NN  G +        KL  L L+DNHF   +P+SL  C 
Sbjct: 372 GPIPPGIA-NSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCK 430

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
           SL  +    N+ SG I +  G    L +I +  N+  G +   + Q   L    +S+N+I
Sbjct: 431 SLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSI 490

Query: 463 SGSLPSY-----------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN 511
           +G++P             LS NR+ G +P+ I  + R+S L L  N L G++P  +  L 
Sbjct: 491 TGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLT 550

Query: 512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQT 571
            L+ LDLS N+    IPP  +N        L  L  ++LS N L   IP  +  L+++Q 
Sbjct: 551 NLEYLDLSSNRFSSEIPPTLNN--------LPRLYYMNLSRNDLDQTIPEGLTKLSQLQM 602

Query: 572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKI 631
           L+LS+N L G I S F +L+++E LDL HN L+G+IP    ++ AL    V++NNL G I
Sbjct: 603 LDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPI 662

Query: 632 PEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTT 691
           P+    F       ++GN  LCG            + +S  +  D NLI           
Sbjct: 663 PD-NAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLI----------- 710

Query: 692 SYVIV-IFGIVIILYV 706
            Y++V I G +IIL V
Sbjct: 711 IYILVPIIGAIIILSV 726

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  219 bits (559), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 229/795 (28%), Positives = 358/795 (45%), Gaps = 109/795 (13%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           + S  +L  LCL  N  +  +     E+ N  +L+ L L  +SL   LL  + S  P L 
Sbjct: 85  ISSLKNLRELCLAGNQFSGKIPP---EIWNLKHLQTLDLSGNSL-TGLLPRLLSELPQLL 140

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
            L + D   +G +    F    +L  LD++      N S    I   +  L  LS  Y  
Sbjct: 141 YLDLSDNHFSGSLPPSFFISLPALSSLDVS------NNSLSGEIPPEIGKLSNLSNLYMG 194

Query: 121 FGTNSSRI-----------------------LDQGLCPLVHLQELHMANNDLRGSLPWCL 157
             + S +I                       L + +  L HL +L ++ N L+ S+P   
Sbjct: 195 LNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSF 254

Query: 158 ANMTSLRTLDVSSNQLTG----------SISSSPLILDAYNNEINAEITESHSLTAPNFQ 207
             + +L  L++ S +L G          S+ S  L  ++ +  +  E++E   LT   F 
Sbjct: 255 GELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLT---FS 311

Query: 208 LKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDS 267
            +   LS       + P ++     L+ + L++ + +GE P+ + E+   L+ LSL ++ 
Sbjct: 312 AERNQLSG------SLPSWMGKWKVLDSLLLANNRFSGEIPHEI-EDCPMLKHLSLASNL 364

Query: 268 LAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGN 327
           L+G     +    SL  +D+S N   G I  E+ D   SL    ++ N ++GSIP     
Sbjct: 365 LSGSIPRELCGSGSLEAIDLSGNLLSGTI-EEVFDGCSSLGELLLTNNQINGSIPEDLWK 423

Query: 328 MNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLED 387
           +  L  LDL +N+ TGEIP+ L     NL     S N LEG++ ++  N   L  L+L D
Sbjct: 424 LP-LMALDLDSNNFTGEIPKSL-WKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSD 481

Query: 388 NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
           N    EIP+ + K  SL  L+LN N   GKIP  LG+ T L  + +  N+L+G IP    
Sbjct: 482 NQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKIT 541

Query: 448 QLDSLQILGISDNNISGSLPSY-----------------------LSYNRLNGSIPDRID 484
            L  LQ L +S NN+SGS+PS                        LSYNRL+G IP+ + 
Sbjct: 542 ALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELG 601

Query: 485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHER----- 539
             L L  + L++N+L GE+P  L  L  L +LDLS N L G IP    N+   +      
Sbjct: 602 ECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLAN 661

Query: 540 -----------RVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFT 588
                       +L  L  ++L+ NKL G +P  +GNL  +  ++LS NNL+G + S  +
Sbjct: 662 NQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELS 721

Query: 589 NLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT-----QFATFNE 643
            +  +  L +  NK  G+IP +L  L  L    V+ N LSG+IP         +F    +
Sbjct: 722 TMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAK 781

Query: 644 SNYKGNPFLCGLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFN--TFTTSYVI--VIFG 699
           +N +G     G    +C+ P   L  S + E    ++  DC        +++ I  ++ G
Sbjct: 782 NNLRGEVPSDG----VCQDPSKAL-LSGNKELCGRVVGSDCKIEGTKLRSAWGIAGLMLG 836

Query: 700 IVIILYVNPYWRRRW 714
             II++V  +  RRW
Sbjct: 837 FTIIVFVFVFSLRRW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 219/764 (28%), Positives = 352/764 (46%), Gaps = 124/764 (16%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           + + +SL +L L  N LT  + +   +L +  N+  L +  + L   + +++ ++  +L+
Sbjct: 115 LSNLTSLESLFLFSNQLTGEIPS---QLGSLVNIRSLRIGDNELVGDIPETLGNLV-NLQ 170

Query: 61  SLSMIDCKVNGVVRSQ--GFPHFKSL----EYLDMNTACIALNASFLQIIGASMPFL--- 111
            L++  C++ G + SQ       +SL     YL+        N S L +  A+   L   
Sbjct: 171 MLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGT 230

Query: 112 ------KYLSLSYFTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLR 164
                 +  +L       NS +  +   L  +  LQ L +  N L+G +P  LA++ +L+
Sbjct: 231 IPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQ 290

Query: 165 TLDVSSNQLTGSIS------SSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYE 218
           TLD+S+N LTG I       S  L L   NN ++  + +S  + + N  L+ L LS G +
Sbjct: 291 TLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKS--ICSNNTNLEQLVLS-GTQ 347

Query: 219 DGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLE----------NNT------------ 256
                P  L     L+ +DLS+  + G  P  L E          NNT            
Sbjct: 348 LSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNL 407

Query: 257 -------------------------KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNN 291
                                    KLE L L  +  +G     I +  SL+++D+  N+
Sbjct: 408 TNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNH 467

Query: 292 FQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI 351
           F+G IP  IG  L  L+  ++  N L G +P+S GN + L ILDL++N L+G IP     
Sbjct: 468 FEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF 526

Query: 352 GCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLE-----------------------DN 388
               LE L+L NN+L+G++     +L  L+ + L                        +N
Sbjct: 527 -LKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNN 585

Query: 389 HFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQ 448
            F +EIP  L    +L+ L L  N L+GKIP  LG +  L  + +  N L G IP+    
Sbjct: 586 GFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVL 645

Query: 449 LDSLQILGISDNNISGSLPSYL-----------SYNRLNGSIPDRIDGLLRLSHLILAHN 497
              L  + +++N +SG +P +L           S N+   S+P  +    +L  L L  N
Sbjct: 646 CKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGN 705

Query: 498 NLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
           +L G +P ++  L  L +L+L  N+  G +P             LS L  + LS N L G
Sbjct: 706 SLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK--------LSKLYELRLSRNSLTG 757

Query: 558 DIPPQIGNLTRIQT-LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA 616
           +IP +IG L  +Q+ L+LS+NN TG I ST   L  +E+LDL HN+L G++P  + ++ +
Sbjct: 758 EIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKS 817

Query: 617 LVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
           L   +V++NNL GK+ +   QF+ +   ++ GN  LCG PL  C
Sbjct: 818 LGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  217 bits (552), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 204/626 (32%), Positives = 302/626 (48%), Gaps = 101/626 (16%)

Query: 133 LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSIS-------------- 178
           L  LVHLQ    A N L GS+P  +  + +L  LD+S NQLTG I               
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVL 247

Query: 179 ----------------SSPLILDAYNNEINAEI-TESHSLTAPNFQLKSLSLSSGYEDGV 221
                           SS + L+ Y+N++  +I  E  +L     QL++L +   Y++ +
Sbjct: 248 TENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLV----QLQALRI---YKNKL 300

Query: 222 T--FPKFLHHQNKLEDVDLSHIKMNGEFPNWL--LENNTKLESLSLVNDSLAGPFRLPIH 277
           T   P  L    +L  + LS   + G     +  LE+   LE L+L +++  G F   I 
Sbjct: 301 TSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSIT 357

Query: 278 SHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLS 337
           + ++L +L V  NN  G +PA++G +L +L + +   N L G IPSS  N   L++LDLS
Sbjct: 358 NLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLS 416

Query: 338 NNHLTGEIPE--------HLAIG--------------CVNLEILVLSNNNLEGHMFSKNF 375
           +N +TGEIP          ++IG              C NLE L +++NNL G +     
Sbjct: 417 HNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIG 476

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
            L KL  L +  N     IP+ +     L  L+L++N  +G+IP+ + NLT LQ + +  
Sbjct: 477 KLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYS 536

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPS---------YLSY--NRLNGSIPDRID 484
           N LEGPIP     +  L +L +S+N  SG +P+         YLS   N+ NGSIP  + 
Sbjct: 537 NDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLK 596

Query: 485 GLLRLSHLILAHNNLEGEVPVQ-LCGLNQLQL-LDLSDNKLHGLIPPCFDNTALHERRVL 542
            L  L+   ++ N L G +P + L  L  +QL L+ S+N L G IP       + +   L
Sbjct: 597 SLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDL 656

Query: 543 S--LLSG--------------IDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILS 585
           S  L SG              +D S N L G IP ++   +  I +LNLS N+ +G I  
Sbjct: 657 SNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQ 716

Query: 586 TFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESN 645
           +F N+ H+ SLDL  N L G+IP  L  L+ L    +A NNL G +PE +  F   N S+
Sbjct: 717 SFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASD 775

Query: 646 YKGNPFLCGLPLPICRSPVTMLEAST 671
             GN  LCG   P+   P T+ + S+
Sbjct: 776 LMGNTDLCGSKKPL--KPCTIKQKSS 799

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  213 bits (541), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 286/605 (47%), Gaps = 77/605 (12%)

Query: 113 YLSLSYFTF-GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSN 171
           + SL   T  G N +  L + L   + L+ L +++N L G +PW L+ + +L TL ++SN
Sbjct: 104 FRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSN 163

Query: 172 QLTGSI-------------------------------SSSPLILDAYNNEIN----AEIT 196
           QLTG I                               S   +I    N EI+    +EI 
Sbjct: 164 QLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIG 223

Query: 197 ESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNT 256
           +  +LT       S+S           P  L    KLE + +    ++GE P+  L N +
Sbjct: 224 DCSNLTVLGLAETSVS--------GNLPSSLGKLKKLETLSIYTTMISGEIPS-DLGNCS 274

Query: 257 KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA 316
           +L  L L  +SL+G     I     L  L +  N+  G IP EIG+   +L   ++S+N 
Sbjct: 275 ELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNC-SNLKMIDLSLNL 333

Query: 317 LDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFN 376
           L GSIPSS G ++FL+   +S+N  +G IP  ++  C +L  L L  N + G + S+   
Sbjct: 334 LSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTIS-NCSSLVQLQLDKNQISGLIPSELGT 392

Query: 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN 436
           LTKL+      N     IP  L+ C  L+ L L+ N+L+G IP  L  L  L  +++  N
Sbjct: 393 LTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISN 452

Query: 437 HLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL-----------SYNRLNGSIPDRIDG 485
            L G IP       SL  L +  N I+G +PS +           S NRL+G +PD I  
Sbjct: 453 SLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGS 512

Query: 486 LLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS-- 543
              L  + L++N+LEG +P  +  L+ LQ+LD+S N+  G IP          + +LS  
Sbjct: 513 CSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKN 572

Query: 544 LLSG--------------IDLSCNKLIGDIPPQIGNLTRIQ-TLNLSHNNLTGTILSTFT 588
           L SG              +DL  N+L G+IP ++G++  ++  LNLS N LTG I S   
Sbjct: 573 LFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIA 632

Query: 589 NLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG 648
           +L  +  LDL HN L G +   L  +  LV  +++YN+ SG +P+    F   +  + +G
Sbjct: 633 SLNKLSILDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLPD-NKLFRQLSPQDLEG 690

Query: 649 NPFLC 653
           N  LC
Sbjct: 691 NKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 178/542 (32%), Positives = 267/542 (49%), Gaps = 81/542 (14%)

Query: 133 LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT-------GSISSSPLILD 185
           L  L +LQEL + +N L G +P  L +  SL+ L++  N L+       G IS+   I  
Sbjct: 150 LGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRA 209

Query: 186 AYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNG 245
             N+E++ +I E          LK L L++    G + P  L   +KL+ + +    ++G
Sbjct: 210 GGNSELSGKIPEE---IGNCRNLKVLGLAATKISG-SLPVSLGQLSKLQSLSVYSTMLSG 265

Query: 246 EFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP 305
           E P  L  N ++L +L L ++ L+G     +   ++L  + +  NN  G IP EIG  + 
Sbjct: 266 EIPKEL-GNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIG-FMK 323

Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA--------------- 350
           SL++ ++SMN   G+IP SFGN++ LQ L LS+N++TG IP  L+               
Sbjct: 324 SLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQI 383

Query: 351 --------------------------------IGCVNLEILVLSNNNLEGHMFSKNFNLT 378
                                            GC NL+ L LS N L G + +  F L 
Sbjct: 384 SGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLR 443

Query: 379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438
            L+ LLL  N     IP  +  C SL  L L NN ++G+IP+ +G L  L ++ + EN+L
Sbjct: 444 NLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNL 503

Query: 439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYL-----------SYNRLNGSIPDRIDGLL 487
            GP+P+       LQ+L +S+N + G LP  L           S N L G IPD +  L+
Sbjct: 504 SGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLI 563

Query: 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP-PCFDNTALHERRVLSLLS 546
            L+ LIL+ N+  GE+P  L     LQLLDLS N + G IP   FD        +  L  
Sbjct: 564 SLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFD--------IQDLDI 615

Query: 547 GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGK 606
            ++LS N L G IP +I  L R+  L++SHN L+G  LS  + L ++ SL++ HN+ +G 
Sbjct: 616 ALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGD-LSALSGLENLVSLNISHNRFSGY 674

Query: 607 IP 608
           +P
Sbjct: 675 LP 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score =  203 bits (516), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 180/571 (31%), Positives = 278/571 (48%), Gaps = 78/571 (13%)

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSN-QLTGSISS 179
           FGT S  I   G+  L HL  L +A N+  G LP  + ++TSL+ L++S+N  LTG+   
Sbjct: 83  FGTISPEI---GM--LTHLVNLTLAANNFTGELPLEMKSLTSLKVLNISNNGNLTGTFPG 137

Query: 180 SPL-------ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNK 232
             L       +LD YNN  N ++    S      +LK LS    +  G   P+       
Sbjct: 138 EILKAMVDLEVLDTYNNNFNGKLPPEMSELK---KLKYLSFGGNFFSG-EIPESYGDIQS 193

Query: 233 LEDVDLSHIKMNGEFPNWL--LENN----------------------TKLESLSLVNDSL 268
           LE + L+   ++G+ P +L  L+N                       TKLE L + + +L
Sbjct: 194 LEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVPPEFGGLTKLEILDMASCTL 253

Query: 269 AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNM 328
            G     + + K L  L +  NN  G IP E+  ++ SL S ++S+N L G IP SF N+
Sbjct: 254 TGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLV-SLKSLDLSINQLTGEIPQSFINL 312

Query: 329 NFLQILDLSNNHLTGEIPEHLAIGCV-NLEILVLSNNNLEGHM---FSKNFNLTKLSWLL 384
             + +++L  N+L G+IPE  AIG +  LE+  +  NN    +     +N NL KL    
Sbjct: 313 GNITLINLFRNNLYGQIPE--AIGELPKLEVFEVWENNFTLQLPANLGRNGNLIKLD--- 367

Query: 385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPV 444
           + DNH    IP+ L +   LE L L+NN   G IP+ LG    L  I I +N L G +P 
Sbjct: 368 VSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKIRIVKNLLNGTVPA 427

Query: 445 AFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP 504
               L  + I+ ++DN  SG LP  +S     G + D+I          L++N   GE+P
Sbjct: 428 GLFNLPLVTIIELTDNFFSGELPVTMS-----GDVLDQI---------YLSNNWFSGEIP 473

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL--LSGIDLSCNKLIGDIPPQ 562
             +     LQ L L  N+  G IP          R +  L  LS I+ S N + G IP  
Sbjct: 474 PAIGNFPNLQTLFLDRNRFRGNIP----------REIFELKHLSRINTSANNITGGIPDS 523

Query: 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
           I   + + +++LS N + G I     N++++ +L++  N+L G IP  +  + +L    +
Sbjct: 524 ISRCSTLISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDL 583

Query: 623 AYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
           ++N+LSG++P +  QF  FNE+++ GN +LC
Sbjct: 584 SFNDLSGRVP-LGGQFLVFNETSFAGNTYLC 613

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  202 bits (514), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 221/437 (50%), Gaps = 24/437 (5%)

Query: 233 LEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF 292
           L+ +DLS    NG  P     N ++LE L L  +   G   +     + LR  ++SNN  
Sbjct: 88  LKHLDLSGNNFNGRIPTSF-GNLSELEFLDLSLNRFVGAIPVEFGKLRGLRAFNISNNLL 146

Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG 352
            G IP E+  +L  L  F +S N L+GSIP   GN++ L++     N L GEIP  L + 
Sbjct: 147 VGEIPDEL-KVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPNGLGL- 204

Query: 353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
              LE+L L +N LEG +    F   KL  L+L  N    E+P+++  C  L  + + NN
Sbjct: 205 VSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEAVGICSGLSSIRIGNN 264

Query: 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS---- 468
            L G IP+ +GN++GL Y    +N+L G I   F +  +L +L ++ N  +G++P+    
Sbjct: 265 ELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSKCSNLTLLNLAANGFAGTIPTELGQ 324

Query: 469 -------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN 521
                   LS N L G IP    G   L+ L L++N L G +P +LC + +LQ L L  N
Sbjct: 325 LINLQELILSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQN 384

Query: 522 KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ-TLNLSHNNLT 580
            + G IP        HE      L  + L  N L G IPP+IG +  +Q  LNLS N+L 
Sbjct: 385 SIRGDIP--------HEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLH 436

Query: 581 GTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT 640
           G++      L  + SLD+ +N L G IP  L  + +L+  + + N L+G +P +   F  
Sbjct: 437 GSLPPELGKLDKLVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPVP-VFVPFQK 495

Query: 641 FNESNYKGNPFLCGLPL 657
              S++ GN  LCG PL
Sbjct: 496 SPNSSFLGNKELCGAPL 512

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  202 bits (513), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 181/590 (30%), Positives = 280/590 (47%), Gaps = 88/590 (14%)

Query: 133 LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLIL-------- 184
           L  ++ L++L++  N L GS+P  + N++SL+ L + SN LTG I  S   L        
Sbjct: 135 LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRA 194

Query: 185 --DAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIK 242
             + ++  I +EI+   SL       K L L+    +G + PK L     L D+ L   +
Sbjct: 195 GRNGFSGVIPSEISGCESL-------KVLGLAENLLEG-SLPKQLEKLQNLTDLILWQNR 246

Query: 243 MNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGD 302
           ++GE P  +  N ++LE L+L  +   G     I     ++ L +  N   G IP EIG+
Sbjct: 247 LSGEIPPSV-GNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGN 305

Query: 303 ILPSLSSFNISMNALDGSIPSSFGN------------------------MNFLQILDLSN 338
           ++ + +  + S N L G IP  FG+                        +  L+ LDLS 
Sbjct: 306 LIDA-AEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSI 364

Query: 339 NHLTGEIPEHLA----------------------IGCV-NLEILVLSNNNLEGHMFSKNF 375
           N L G IP+ L                       IG   N  +L +S N+L G + +   
Sbjct: 365 NRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFC 424

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
               L  L L  N     IP+ L  C SL  L L +N L+G +P  L NL  L  + + +
Sbjct: 425 RFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQ 484

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL-----------SYNRLNGSIPDRID 484
           N L G I     +L +L+ L +++NN +G +P  +           S N+L G IP  + 
Sbjct: 485 NWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG 544

Query: 485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL 544
             + +  L L+ N   G +  +L  L  L++L LSDN+L G IP  F +        L+ 
Sbjct: 545 SCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGD--------LTR 596

Query: 545 LSGIDLSCNKLIGDIPPQIGNLTRIQ-TLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           L  + L  N L  +IP ++G LT +Q +LN+SHNNL+GTI  +  NL+ +E L L  NKL
Sbjct: 597 LMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKL 656

Query: 604 NGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
           +G+IP  +  L +L++ +++ NNL G +P+ T  F   + SN+ GN  LC
Sbjct: 657 SGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	740
255581263	912	serine-threonine protein kinase, plant-t	0.870	0.706	0.464	1e-165
224142481	781	predicted protein [Populus trichocarpa]	0.895	0.848	0.430	1e-144
224112245	876	predicted protein [Populus trichocarpa]	0.917	0.775	0.425	1e-142
224098008	1097	predicted protein [Populus trichocarpa]	0.901	0.608	0.402	1e-126
224134597	947	predicted protein [Populus trichocarpa]	0.895	0.700	0.401	1e-126
224142723	923	predicted protein [Populus trichocarpa]	0.889	0.712	0.411	1e-125
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.968	0.489	0.371	1e-122
224106950	863	predicted protein [Populus trichocarpa]	0.860	0.738	0.401	1e-120
224112233	976	leucine rich repeat family protein with	0.870	0.659	0.405	1e-120
359483099	1231	PREDICTED: probable LRR receptor-like se	0.928	0.558	0.355	1e-120

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 349/752 (46%), Positives = 453/752 (60%), Gaps = 108/752 (14%)

Query: 73  VRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQG 132
           +++Q  P+F++LE L ++   I L  SFLQ +G  M  LK LSLS    G   +    QG
Sbjct: 168 IQAQDLPNFENLEELYLDK--IELENSFLQTVGV-MTSLKVLSLS--GCGLTGALPNVQG 222

Query: 133 LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLI-------LD 185
           LC L+HL+ L +++N+  G LPWCL+N+TSL+ LD+SSNQ  G IS+SPL        LD
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 186 AYNNEI----------------------NAEITESHSLTAPNFQLKSLSLSSGYEDGVTF 223
             NN                        NA   E+   +AP FQL S+ + SGY    TF
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEAELHSAPRFQLISI-IFSGYGICGTF 341

Query: 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLR 283
           P FL+HQN L+ VDLSH+ + GEFPNWLL NNT+LE L LVN+SL+G  +LP+H H +L 
Sbjct: 342 PNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLL 401

Query: 284 LLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343
            LD+SNN+    IP EIG  LP L   N+S N  DGSIPSSFGNMN L+ILDLSNN L+G
Sbjct: 402 ALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSG 461

Query: 344 EIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS 403
            IPEHLA GC +L  L+LSNN+L+G MFSK FNLT L WL L+ NHF   IP+SLSK  +
Sbjct: 462 SIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSKS-A 520

Query: 404 LEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463
           L  + L++N+LSG IP W+GNL+ LQ +I+  N L+GPIPV FCQL  L++L +++N++S
Sbjct: 521 LSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVS 580

Query: 464 GSLPSY----------------------------------LSYNRLNGSIPDRIDGLLRL 489
           G LPS                                   LS NR+ G IP  I G+  L
Sbjct: 581 GILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINAL 640

Query: 490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFD----------------- 532
             L L  N  +GE+P Q+CGL QL L+ L+DN L G IP C                   
Sbjct: 641 RILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCLQLDQSDSLAPDVPPVPNP 700

Query: 533 -----------------NTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLS 575
                             +  ++ ++LS +SGID SCNKL G+IPP++GN + I +LNLS
Sbjct: 701 LNPYYLPVRPMYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLS 760

Query: 576 HNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMT 635
           +N  TG I STF+NL+ IESLDL +N LNG IP QL+EL  L  FSVA+NNL GK P+ T
Sbjct: 761 YNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRT 820

Query: 636 TQFATFNESNYKGNPFLCGLPLPIC---RSPVTMLEASTSNEGDDNLIDMDCFFNTFTTS 692
            QFATF  S+Y+GNP LCGLPLP     R   +   AS  +E + N +DM+ F+ +F  S
Sbjct: 821 GQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESNFLDMNTFYGSFIVS 879

Query: 693 YVIVIFGIVIILYVNPYWRRRWFYLVEMWIAS 724
           Y  VI G+ ++LY+NP WRR WF  V++ I+S
Sbjct: 880 YTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 332/772 (43%), Positives = 447/772 (57%), Gaps = 109/772 (14%)

Query: 68  KVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLS-LSYFTFGTNSS 126
           ++     S GF     L  L++      L  SF +I  +++ FL+ LS L +     N  
Sbjct: 11  EIQNFATSTGFERSLRLNKLEI------LELSFNKINDSTLSFLEGLSSLKHLNLDNNQL 64

Query: 127 R--ILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS---- 180
           +  I  +GLC L  LQEL ++ NDL G LP CL N+ +L+ LD+S N  +G+IS S    
Sbjct: 65  KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGS 123

Query: 181 ----------------PLILDAYNNEINA--------EITESHSLT---APNFQLKSLSL 213
                           P+ L  + N  N         EI ES  L     P FQL+ LSL
Sbjct: 124 LTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLIPRFQLQRLSL 183

Query: 214 SSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFR 273
           +  +  G TFPKFL++Q+ L+ VDLSHIK+ GEFP+WLL+NNTKLE+L LVN SL+G  +
Sbjct: 184 AC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQ 242

Query: 274 LPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQI 333
           LP  SH +L  LD+S N+ Q +IP +IG   P L   N+S N   GSIPSS  NM+ L +
Sbjct: 243 LPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGV 302

Query: 334 LDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE 393
           LDLSNN L+G IPE L  GC++L  LVLSNN+L+G  F ++FNL  L+ L+L  N     
Sbjct: 303 LDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGI 362

Query: 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
           +P SLS    LE L ++ NNLSGKIP+W+G ++ LQY+ + EN+L G +P +FC   ++ 
Sbjct: 363 LPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCSSRTMT 422

Query: 454 ILGISDNNISGSLPSY-----------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGE 502
            + +S N + GSL              LS+N   G IP+ I  LL LS L+L +NNLEG+
Sbjct: 423 EVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGK 482

Query: 503 VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERR---------------------- 540
           +P QLC L +L L+DLS N L G I PC   T+  +R                       
Sbjct: 483 IPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGRENRGPQIV 542

Query: 541 -----------------------------VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQT 571
                                        +L  +SGIDLSCN L G+IP ++GNL+ IQ 
Sbjct: 543 FPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQV 602

Query: 572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKI 631
           LNLSHN+LTG I  TF+NL+ IESLDL +N LNG+IP QL++LN L  FSVA+NNLSGK 
Sbjct: 603 LNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKT 662

Query: 632 PEMTTQFATFNESNYKGNPFLCGLPLP--ICRS--PVTMLEASTSNEGDDNLIDMDCFFN 687
           PEM  QF+TFN+S Y+GNP LCG PL     R+  P  +  + T  + ++ +IDM+ F  
Sbjct: 663 PEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIV 722

Query: 688 TFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNL-IPIRF 738
           TF+ +Y++V+  I  +LY+NP WRR WFY +   I +CYYF+VDNL +P RF
Sbjct: 723 TFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 326/766 (42%), Positives = 456/766 (59%), Gaps = 87/766 (11%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +G+F +L T+ L DN+       T  EL N ++LE L L+   L  + +Q + ++  SLK
Sbjct: 146 LGAFPNLTTVYLNDNDFK----GTILELQNLSSLEKLYLNGCFLDENSIQILGAL-SSLK 200

Query: 61  SLSMIDCKVNGVVRSQGFPH-FKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYF 119
            LS+ +  V+G+V SQGF +  K+LE+L  + +   L+ S LQ IG ++  LK L L   
Sbjct: 201 YLSLYE--VSGIVPSQGFLNILKNLEHLYSSNS--TLDNSILQSIG-TITSLKILELVKC 255

Query: 120 TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
                    L  GLC L +LQEL M +ND+ G L  CLAN+TSL+ LD+SSN L   +S 
Sbjct: 256 RLNGQ----LPIGLCNLNNLQELDMRDNDISGFLIPCLANLTSLQRLDLSSNHLKIPMSL 311

Query: 180 SPLI-------LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNK 232
           SPL            +NEI AE  + H+L +P FQL+SL LS+  +    FP+FL+HQ  
Sbjct: 312 SPLYNLSKLKSFHGLDNEIYAE-EDDHNL-SPKFQLQSLYLSNHGQGARAFPRFLYHQLN 369

Query: 233 LEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF 292
           L+ +DL++I+M G+FPNWL+ENNT L++L L N SL+GPF LP +SH +L +L +S N  
Sbjct: 370 LQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNLSILSISMNYL 429

Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG 352
           QG+IP+EIG  LP L+  ++S N  +GSIPSS  NM+ L+ LDLSNN LTG IP+HL   
Sbjct: 430 QGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLSNNVLTGRIPKHLTTS 489

Query: 353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
                 L+LSNN+L+G                         IP S+S C SL+ L ++NN
Sbjct: 490 LCLFNFLILSNNSLQG------------------------AIPDSMSNCSSLQLLDVSNN 525

Query: 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY--- 469
           NLS +IP W+ +++ L ++ +  N+  GP+P       +L+ + +S N + G +      
Sbjct: 526 NLSPRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGLITKAFYN 585

Query: 470 --------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN 521
                   LS+N L G+IP+ I  L +L +L+L++N LEGE+P+QLC L+ L L+DLS N
Sbjct: 586 FSTLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHN 645

Query: 522 KLHGLIPPCFDNTA---------------------------LHERRVLSLLSGIDLSCNK 554
            L G I  C  + A                           ++   ++ L SGID SCN 
Sbjct: 646 HLSGNILSCMTSLAPFSALTDATIVETSQQYLEFTTKNVSLIYRGSIVKLFSGIDFSCNN 705

Query: 555 LIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVEL 614
             G IPP+I NL++I+ LNLSHN+L G I  TF+ L+ IESLDL HNKL+G+IP QL EL
Sbjct: 706 FTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDGEIPPQLTEL 765

Query: 615 NALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP-ICRSPVTMLEASTSN 673
            +L +FSVA+NNLSGK P    QFATF ES YK NPFLCG PLP IC + +     S +N
Sbjct: 766 FSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGASMLPSPTSMNN 825

Query: 674 EGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVE 719
           E +   IDM+ F+ +F  +Y++V+  IV +LY+NPYWRR WF+  E
Sbjct: 826 EDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 313/777 (40%), Positives = 431/777 (55%), Gaps = 110/777 (14%)

Query: 45   HISLLQSIASIFPSLKSLSMIDCKVNGVVRSQG-FPHFKSLEYLDMNTACIALNASFLQI 103
            ++ +LQS+ S +PSLK+LS+ D  +     SQG F +  +LE L ++   + +N  FLQ 
Sbjct: 329  NLDILQSLRS-WPSLKTLSLKDTNL-----SQGTFFNSSTLEELHLDNTSLPIN--FLQN 380

Query: 104  IGASMPFLKYLSLSYFTF-GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTS 162
             GA +P LK LS++     GT    +  QG C L +L++L +A N+  G+LP CL N++S
Sbjct: 381  TGA-LPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSS 435

Query: 163  LRTLDVSSNQLTGSISSSPLI-----------------------------LDAYNNEINA 193
            L+ LDVS NQ TG+I+  PL                              L  +++E N 
Sbjct: 436  LQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNR 495

Query: 194  EITESHSLT--APNFQLKSLSLSSGYED---GVTFPKFLHHQNKLEDVDLSHIKMNGEFP 248
             +TES +     P FQL    LSS        V    FL++Q  L  +DLSH  + G FP
Sbjct: 496  LVTESAAFDNLIPKFQLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFP 555

Query: 249  NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLS 308
            +WLL+NNT++E L L  +S  G  +L  H + ++  LD+SNNN  G+IP +I  I P+L 
Sbjct: 556  SWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELDISNNNINGQIPKDICLIFPNLW 615

Query: 309  SFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
               ++ N   G IPS  GN + L  LDLSNN L+    E L      +++L LSNN+L G
Sbjct: 616  ILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKLEQLTT----IQVLKLSNNSLGG 671

Query: 369  HMFSKNFNLTKLSWLLLEDNHF---VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL 425
             + +  FN +   +L L  N+F   + + P    K  S+  L L+NN  SG +P+   N 
Sbjct: 672  QIPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWSV--LDLSNNQFSGMLPRSFFNF 729

Query: 426  TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS----------YLSYNRL 475
            T  + + + +N  +GPIP  FC+LD L+ L +SDN +SG +PS          +LS NRL
Sbjct: 730  TYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITHIHLSKNRL 789

Query: 476  NG------------------------SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN 511
            +G                        SIP+ I  L  LS L+L  NN +GE+ VQLC L 
Sbjct: 790  SGPLTYGFYNSSSLVTMDLRDNSFIGSIPNWIGNLSSLSVLLLRANNFDGELAVQLCLLE 849

Query: 512  QLQLLDLSDNKLHGLIPPCFDNTALHE---------------RRVLSLLSGIDLSCNKLI 556
            QL +LD+S N+L G +P C  N  L E                +VLS + GIDLS N  +
Sbjct: 850  QLSILDVSQNQLSGPLPSCLGNLTLKEIPENARGSRIWFSVMGKVLSYMYGIDLSNNNFV 909

Query: 557  GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA 616
            G IPP+ GNL++I +LNLSHNNLTG+I +TF+NL+ IESLDL +N LNG IP QL E+  
Sbjct: 910  GAIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITT 969

Query: 617  LVVFSVAYNNLSGKIPEMTTQFATFNESN-YKGNPFLCGLPLP--ICRSPVTMLEASTSN 673
            L VFSVAYNNLSG+ PE   QF TF++ N Y+GNPFLCG PL        V +       
Sbjct: 970  LEVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPNDE 1029

Query: 674  EGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVV 730
            +GDD  IDM+ F+ +F   Y +V+  I  +LY+NPYWRRRW Y +E  I +CYYFVV
Sbjct: 1030 QGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 318/792 (40%), Positives = 436/792 (55%), Gaps = 129/792 (16%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +G+F SL TL L  N+    +     EL N ++L+ L +D  SL    LQS+ ++ PSLK
Sbjct: 220 LGAFPSLMTLYLNKNDFRGRILG--DELQNLSSLKSLYMDGCSLDEHSLQSLGAL-PSLK 276

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEY---------------LDMNTACIALNASFLQIIG 105
           +L +    ++G V S+GF   K+LEY               + M T   ALN    ++ G
Sbjct: 277 NLLL--RALSGSVPSRGFLDLKNLEYLDLNLNTLNNSIFQAIRMMTFLKALNLHGCKLDG 334

Query: 106 A---SMPFLKYLSLSYFTFGTNS---SRILDQGLCPLVHLQELHMANNDLRGSLPWCLAN 159
               +  FL   +L +    +N+   S     GLC L HLQ+L+M +NDL G LP CLAN
Sbjct: 335 RIPLAQGFLNLKNLEHLDLSSNTLDNSIFQTIGLCDLNHLQQLYMYDNDLSGFLPPCLAN 394

Query: 160 MTSLRTLDVSSNQLTGSISSSPLI-------LDAYNNEINAEITESHSLTAPNFQLKSLS 212
           +TSL+ LD+S N L   +S SPL            +NEI AE  + HSL+ P FQL+S+S
Sbjct: 395 LTSLQQLDLSFNHLKIPMSLSPLYNLSKLKYFIGSDNEIYAE-EDDHSLS-PKFQLESIS 452

Query: 213 LSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPF 272
           LS+  +    FPKFL+HQ  L+  DL++I++ GEFPNWL+ENNT L  LSL N SL GPF
Sbjct: 453 LSNRGQGAGAFPKFLYHQFSLQSFDLTNIQIKGEFPNWLIENNTHLHDLSLENCSLLGPF 512

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
            LP +SH                                               N++FL 
Sbjct: 513 LLPKNSHV----------------------------------------------NLSFLS 526

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE 392
           I   S N+  G+IP  +      LE+L +S+N   G +     N++ L  L L +N    
Sbjct: 527 I---SMNYFQGQIPLEIGARLPGLEVLFMSSNGFNGSIPFSLGNISSLKGLDLSNNSLQG 583

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
           +IP  +    SLE L+L+ NN SG++P    + + L+Y+ +  N L+GPI + F   +S 
Sbjct: 584 QIPGWIGNMSSLEFLNLSGNNFSGRLPPRF-DTSNLRYVYLSRNKLQGPIAMTF--YNSF 640

Query: 453 QILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQ 512
           ++  +            LS+N L GSIP  ID L  L  L+L++NNLEGE+P++LC L+Q
Sbjct: 641 EMFALD-----------LSHNNLTGSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQ 689

Query: 513 LQLLDLSDNKLHGLI----------PPCFD-----------------NTALHER-RVLSL 544
           L L+DLS N   G I          P  +D                 N +L  R  ++  
Sbjct: 690 LTLIDLSHNHFSGNILSWMISSHPFPQQYDSNDYLSSSQQSFEFTTKNVSLSYRGSIIQY 749

Query: 545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
            +GID SCN  IG+IPP+IGNL+ I+ LNLSHN+LTG I  TF+NL+ IESLDL +NKL+
Sbjct: 750 FTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLD 809

Query: 605 GKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP-LPICRS- 662
           G+IP QL+EL  L  FSVA+NNLSGK      QFATF ES YK NPFLCG P L IC + 
Sbjct: 810 GEIPPQLIELFFLEFFSVAHNNLSGKTLARVAQFATFEESCYKDNPFLCGEPLLKICGTT 869

Query: 663 -PVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMW 721
            P + +  ST+NE D   IDM+ F+ TF  +Y++V+  I  ILY+NPYWRR WF+ +E+ 
Sbjct: 870 MPPSPMPTSTNNEDDGGFIDMEVFYVTFGVAYIMVLLVISAILYINPYWRRAWFHFIEVS 929

Query: 722 IASCYYFVVDNL 733
           I +CYYF+VDNL
Sbjct: 930 INNCYYFLVDNL 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 318/773 (41%), Positives = 426/773 (55%), Gaps = 115/773 (14%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +GSF +L  L L DN+    +     E  N ++LEYL LD SSL    LQ +A+  PSL 
Sbjct: 217 LGSFPNLTRLYLEDNDFRGRIL----EFQNLSSLEYLYLDGSSLDEHSLQGLATP-PSLI 271

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
            L + D  + GVV S+GF + K+LEYLD+  +  +L+ S    IG +M  LK L L+  +
Sbjct: 272 HLFLED--LGGVVPSRGFLNLKNLEYLDLERS--SLDNSIFHTIG-TMTSLKILYLTDCS 326

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
                      G  P     +LHM +NDL G LP CLAN+TSL+ LD+SSN L   +S S
Sbjct: 327 L---------NGQIPTAQ-DKLHMYHNDLSGFLPPCLANLTSLQHLDLSSNHLKIPVSLS 376

Query: 181 PLI-------LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKL 233
           PL         D   NEI AE  E H+L+ P FQL+ L LSS  +    FPKFL+HQ  L
Sbjct: 377 PLYNLSKLNYFDGSGNEIYAE-EEDHNLS-PKFQLEFLYLSSRGQGPGAFPKFLYHQVNL 434

Query: 234 EDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQ 293
           + VDL++I+M GEFPNWL+ENNT L+ L L N SL GPF LP +SH +L  L +S N FQ
Sbjct: 435 QYVDLTNIQMKGEFPNWLIENNTYLQELHLENCSLTGPFLLPKNSHVNLLFLSISVNYFQ 494

Query: 294 GRIPAEIGDILPSLSSFNISMNALDGSIPSSFGN-MNFLQILDLSNNHLTGEIPEHLAIG 352
                                    G IPS  G  +  L++L +S+N   G IP  L   
Sbjct: 495 -------------------------GQIPSEIGAYLPRLEVLLMSDNGFNGTIPSSLG-N 528

Query: 353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
             +L++L +  N L G + S              +N    +IP  +    SLE L L+ N
Sbjct: 529 MSSLQVLDMFANVLTGRILS--------------NNSLQGQIPGWIGNMSSLEFLDLSGN 574

Query: 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSY 472
           N SG +P   G  + L+Y+ +  N L GPI +AF     ++ L              LS+
Sbjct: 575 NFSGPLPPRFGTSSKLRYVSLSRNKLHGPIAIAFYNSSKIEALD-------------LSH 621

Query: 473 NRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI----- 527
           N L G IP+ I     L  L+L++NN EGE+P+QLC L+QL L+DLS N L G I     
Sbjct: 622 NDLTGRIPEWIGRQSNLRFLLLSYNNFEGEIPIQLCRLDQLTLIDLSHNYLFGNILSWMI 681

Query: 528 -----------------PPCFD----NTALHER-RVLSLLSGIDLSCNKLIGDIPPQIGN 565
                               F+    N +L  R  ++    GID S N   G+IPP+IGN
Sbjct: 682 SSSPLGISNSHDSVSSSQQSFEFTTKNVSLSYRGDIIRYFKGIDFSRNNFTGEIPPEIGN 741

Query: 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN 625
           L+ I+ LNLSHN+LTG I  TF+NL+ IESLDL +NKL+G+IP +L EL  L  FSVA+N
Sbjct: 742 LSGIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFFLEFFSVAHN 801

Query: 626 NLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP-ICRS--PVTMLEASTSNEGDDN--LI 680
           NLSGK P    QFATF ES YK NPFLCG PLP IC    P +   +ST+    DN   +
Sbjct: 802 NLSGKTPTRVAQFATFEESCYKENPFLCGEPLPKICGVVMPPSPTPSSTNKNNKDNCGFV 861

Query: 681 DMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFVVDNL 733
           DM+ F+ TF  +Y++V+  + ++ Y+NPYWR+ WFY +E+ + +CYYF++DNL
Sbjct: 862 DMEVFYVTFGVAYIMVLLVMGVVFYINPYWRQAWFYFIEVSLNNCYYFIMDNL 914

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 318/856 (37%), Positives = 460/856 (53%), Gaps = 139/856 (16%)

Query: 1    MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
            + +  +L  L L  N+L   +TTT   L +   L  L L+ +  +IS L+S+  +   LK
Sbjct: 614  LAALHNLEELDLSKNDLESFITTTG--LKSLRKLRVLHLETNDFNISTLKSLGRL-SLLK 670

Query: 61   SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
             L +   K+ G V  +   + ++LE LD+++  I+  +S LQI+   M  LK LSL   +
Sbjct: 671  ELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQIVEV-MTSLKALSLR--S 725

Query: 121  FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
             G N S+   QGLC L +LQEL +++N   GS+  CL N+TSLR LD+S N+ +G++ SS
Sbjct: 726  NGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSS 785

Query: 181  ----------------------PLILDAYNNEI---------NAEITESHSLT-APNFQL 208
                                  P+   A ++++         N  + ES   T  P+FQL
Sbjct: 786  LFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQL 845

Query: 209  KSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL 268
            K   LSS      + P FLH+Q+ L  VDLS+  +  +FP WL++NNT+LE L+L N+SL
Sbjct: 846  KVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSL 905

Query: 269  AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNM 328
             G F LP   +     +D+SNN  QG++P+ I   LP+L   N+S N+ +GSIP SFG M
Sbjct: 906  TGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGGM 964

Query: 329  NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDN 388
              L  LDLSNN  TG IPE LA+GC +LE L+LS N+L G MF +  NL  L  L L+DN
Sbjct: 965  RKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDN 1024

Query: 389  HFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQ 448
            HF  +IP  LS    LE L++++N++SGK+P W+GN++ L  +++P N LEGPIPV FC 
Sbjct: 1025 HFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCS 1083

Query: 449  LDSLQILGISDNNISGSLPSYLS----------------------------------YNR 474
            LD+L++L +S+NN+SGSLPS  S                                   N 
Sbjct: 1084 LDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNN 1143

Query: 475  LNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFD-- 532
            L+G IPD I     LS L+L  N+ +G++P QLC L+++ +LDLS N L G IP C +  
Sbjct: 1144 LSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKI 1203

Query: 533  ----------------------NTALHERRVLSL----LSGIDLSCNKLIGDIPPQ---- 562
                                  ++ L+  + + L    ++   ++ +K + +   +    
Sbjct: 1204 QFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTD 1263

Query: 563  --IGN-LTRIQTLNLSHNNLTGT------------------------ILSTFTNLRHIES 595
               GN L  +  ++LS N LTG                         I + F+ L+ IES
Sbjct: 1264 FYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIES 1323

Query: 596  LDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCG- 654
            LDL +N L G IP +L EL  L VFSVAYNNLSGKIPEMT QF TF E++Y GNP+LCG 
Sbjct: 1324 LDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGS 1383

Query: 655  LPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRW 714
            L    C       E     +G   L D D F+ +F  SYV+V+ G+  +LY+N  WR++W
Sbjct: 1384 LLRKNCSRAEEEAEIEEGEKG---LTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKW 1440

Query: 715  FYLVEMWIASCYYFVV 730
            F+++++ I  C  FV+
Sbjct: 1441 FHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106950|ref|XP_002333589.1| predicted protein [Populus trichocarpa] gi|222837497|gb|EEE75876.1| predicted protein [Populus trichocarpa]

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 301/750 (40%), Positives = 428/750 (57%), Gaps = 113/750 (15%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +G+ SSL  + L    L  IV +  +   +  NLEYL L +++L+ S+ Q+I ++  SL+
Sbjct: 188 LGALSSLKNMSLQA--LNGIVLS--RGFLDLKNLEYLDLSYNTLNNSIFQAIGTM-TSLR 242

Query: 61  SLSMIDCKVNGVV-RSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYF 119
           +L +  C+++G +  +QGF + K+LE+LD+++  ++ N   LQ I  +MP LK L L   
Sbjct: 243 TLILHSCRLDGRIPTTQGFFNLKNLEFLDLSSNTLSNN--ILQTI-RTMPSLKTLWLQNC 299

Query: 120 TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
           +   N      QGLC L HLQEL+M +NDL G LP CLANMTSL+ L +SSN L   +S 
Sbjct: 300 SL--NGQLPTTQGLCDLNHLQELYMNDNDLSGFLPPCLANMTSLQRLYLSSNHLKIPMSL 357

Query: 180 SPLI----LDAY---NNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNK 232
           SPL     L ++    NEI AE  + H+LT P FQL+SLSLS+G ++   FPKFL+HQ  
Sbjct: 358 SPLYNLSKLKSFYGSGNEIYAE-EDDHNLT-PKFQLESLSLSNGGQNTRAFPKFLYHQFS 415

Query: 233 LEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF 292
           L+ +DL++I++ GEFPNWL+ENNT L+ LSL N SL+GPF                    
Sbjct: 416 LQSLDLTNIQIKGEFPNWLIENNTYLKLLSLENCSLSGPF-------------------- 455

Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG 352
                     +LP  S  N+S                    L +S NH  G+IP  +   
Sbjct: 456 ----------LLPKSSHVNLS-------------------FLSISMNHFQGQIPSEIGAH 486

Query: 353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
              LE+L++S+N   G + S   N++ +  L L +N    +IP  +    SLE L L+ N
Sbjct: 487 FSGLEVLLMSDNGFNGSIPSSLGNMSLMYELDLSNNSLQGQIPGWIGNMSSLEFLDLSRN 546

Query: 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSY 472
           NLSG +P   G  + L+ + +  N L+GPI +AF   DS +I  +            LS+
Sbjct: 547 NLSGPLPPRFGTSSKLRDVFLSRNRLQGPIAMAFS--DSSEIFALD-----------LSH 593

Query: 473 NRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI----- 527
           N L G IP+ ID L  L  L+L++NNLEGE+P++LC L+QL ++DLS N L G I     
Sbjct: 594 NDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNILSWMI 653

Query: 528 ------------------PPCFDNTAL-----HERRVLSLLSGIDLSCNKLIGDIPPQIG 564
                                F+ T       ++  ++  L+GID SCN   G+IPP+IG
Sbjct: 654 STHPFPIQYNSHYSMFSSQQSFEFTIKNVSFPYKGSIIQYLTGIDFSCNNFTGEIPPEIG 713

Query: 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY 624
           NL +I+ LNLSHN+LTG I STF+NL+ IESLDL +NKL+G+IP +L+EL +L  FSV +
Sbjct: 714 NLNKIKALNLSHNSLTGPIQSTFSNLKEIESLDLSYNKLDGEIPPRLIELFSLEFFSVTH 773

Query: 625 NNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL-PICRS--PVTMLEASTSNEGDDNLID 681
           NNLSGK P    QFATF ES YK N FLCG PL  IC +  P +    S +NE D   +D
Sbjct: 774 NNLSGKTPARVAQFATFEESCYKDNLFLCGEPLTKICGAAMPSSSTPTSRNNEDDGGFMD 833

Query: 682 MDCFFNTFTTSYVIVIFGIVIILYVNPYWR 711
           ++ F+ +F  +Y++V+  I  +L++NPYWR
Sbjct: 834 IEIFYVSFGVAYIMVLLVIGAVLHINPYWR 863

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 307/758 (40%), Positives = 420/758 (55%), Gaps = 114/758 (15%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +G+ SSL  L L + N     T  + +  +  NLEYL L  ++L+ S+ Q+I ++  SLK
Sbjct: 264 LGALSSLKNLSLQELN----GTVPSGDFLDLKNLEYLDLSNTALNNSIFQAIGTM-TSLK 318

Query: 61  SLSMIDCKVNGVV-RSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYF 119
           +L +  C +NG +  +Q F   K+LEYLD++    ALN S  Q IG +M  LK L L   
Sbjct: 319 TLILEGCSLNGQIPTTQDFLDLKNLEYLDLSNT--ALNNSIFQAIG-TMTSLKTLILEGC 375

Query: 120 TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
           +   N      QGLC L HLQEL +++NDL G LP CL N+TSL+ L +S N L   +S 
Sbjct: 376 SL--NGQIPTTQGLCDLNHLQELDVSDNDLSGVLPSCLPNLTSLQQLSLSYNHLKIPMSL 433

Query: 180 SPLI----LDAY---NNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNK 232
           SPL     L ++    NEI AE  + H+L +P FQL+SL LS G   G  FPKFL+HQ  
Sbjct: 434 SPLYNLSKLKSFYGSGNEIFAE-EDDHNL-SPKFQLESLYLS-GIGQGGAFPKFLYHQFN 490

Query: 233 LEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF 292
           L+ +DL++I++ GEFPNWL+ENNT L+ L L N SL GPF LP +SH             
Sbjct: 491 LQSLDLTNIQIKGEFPNWLIENNTYLQELHLENCSLLGPFLLPDNSHV------------ 538

Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG 352
                                             N++FL I   S NH  G+IP  +   
Sbjct: 539 ----------------------------------NLSFLSI---SMNHFQGQIPSEIGAR 561

Query: 353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
              LE+L +S N   G +     N++ L  L L +N    +IP  +    SLE L L+ N
Sbjct: 562 LPGLEVLFMSENGFNGSIPFSLGNISLLEVLDLSNNSLQGQIPGWIGNMSSLEFLDLSRN 621

Query: 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSY 472
           N SG +P   G+ + L++I +  N+L+GPI +AF   DS +I  +            LS+
Sbjct: 622 NFSGLLPPRFGSSSKLKFIYLSRNNLQGPIAMAFH--DSSEIFALD-----------LSH 668

Query: 473 NRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCF- 531
           N L G IP+ ID L  L  L+L++NNLEGE+P+ L  L+QL L+DLS N L G I     
Sbjct: 669 NDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIHLYRLDQLTLIDLSHNHLSGNILSWMI 728

Query: 532 --------------------------DNTALHER-RVLSLLSGIDLSCNKLIGDIPPQIG 564
                                      N +L  R  ++    GID SCN   G IPP+IG
Sbjct: 729 STYNFPVENTYYDSLSSSQQSFEFTTKNVSLSYRGNIIWYFIGIDFSCNNFTGQIPPEIG 788

Query: 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY 624
           NL+ ++ LNLSHNNLTG I  TF+NL+ IESLDL +NKL+G+IP +L+EL +L VFSVA+
Sbjct: 789 NLSMLKVLNLSHNNLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLIELFSLEVFSVAH 848

Query: 625 NNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP-ICRS--PVTMLEASTSNEGDDNLID 681
           NNLSGK P    QFATF ES YK NPFLCG PLP IC +  P +    ST+NE +   +D
Sbjct: 849 NNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGAAMPPSPTPTSTNNEDNGGFMD 908

Query: 682 MDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVE 719
           ++ F+ +F  +Y++V+  I ++L +N YWRR WF+ +E
Sbjct: 909 VEVFYVSFGVAYIMVLLVIGVVLRINLYWRRAWFHFIE 946

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 293/824 (35%), Positives = 421/824 (51%), Gaps = 137/824 (16%)

Query: 25   TQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSL 84
             Q L +   LE L +  +    S+++S+ +I  SLK+L +    +NG    Q F    +L
Sbjct: 212  VQGLLSLKKLEILAISGNEFDKSVIKSLGAI-TSLKTLVLCRIGLNGSFPIQDFASLSNL 270

Query: 85   EYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHM 144
            E LD++        SF  I+ +S+  +  L          +  + +QG C L  LQEL +
Sbjct: 271  EILDLSYN------SFSGILPSSIRLMSSLKSLSLAGNQLNGSLPNQGFCQLNKLQELDL 324

Query: 145  ANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSIS--------------------SSPLIL 184
             +N  +G LP CL N+TSLR LD+S N  +G++S                      P   
Sbjct: 325  NSNFFQGILPPCLNNLTSLRLLDLSHNLFSGNVSSSLLPSLTSLEYIDLSYNLFEGPFSF 384

Query: 185  DAYNNEINAEI-------------TESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQN 231
            +++ N  N ++             TE      P FQLK L LS+ Y+    FP FL +Q 
Sbjct: 385  NSFANHSNLQVVIHGSDNNKFEIETEYPVGWVPLFQLKVLVLSN-YKLIGDFPGFLRYQF 443

Query: 232  KLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNN 291
            +L  VDLSH  + G FPNWLLENNT+LE L L N+SL G   LP+  +  +  LD+S+N 
Sbjct: 444  RLTVVDLSHNNLTGSFPNWLLENNTRLEYLVLRNNSLMGQL-LPLRPNSRITSLDISDNR 502

Query: 292  FQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI 351
              G +   + +++P++   N+S N  +G +PSS   M+ L  LDLS N  +GE+P+ L +
Sbjct: 503  LVGELQQNVANMIPNIEHLNLSNNGFEGILPSSIAEMSSLWSLDLSANSFSGEVPKQLLV 562

Query: 352  GCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN 411
               +LE L LSNN   G +FS++FNLT L +L L++N F   +   +S+   L  L ++N
Sbjct: 563  A-KDLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLDNNQFKGTLSNVISRSSWLRVLDVSN 621

Query: 412  NNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS--- 468
            NN+SG+IP W+GN+T L  +++  N  +G +P    QL  L+ L +S N +SGSLPS   
Sbjct: 622  NNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEISQLQRLEFLDVSQNTLSGSLPSLKS 681

Query: 469  --YLSY-----------------------------NRLNGSIPDRIDGLLRLSHLILAHN 497
              YL +                             NRL GSIP+ I  LL L   +L  N
Sbjct: 682  IEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDIRDNRLFGSIPNSISRLLELRIFLLRGN 741

Query: 498  NLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFD------------------------- 532
             L G +P QLC L ++ L+DLS+N   G IP CF                          
Sbjct: 742  LLSGFIPNQLCHLTKISLMDLSNNNFSGSIPKCFGHIQFGDFKTEHNVYKPMFNPYSFFS 801

Query: 533  ------------NTALHERRV------------------LSLLSGIDLSCNKLIGDIPPQ 562
                        +T  H   V                  L  +SG+DLSCN L G+IP +
Sbjct: 802  IYTGYLVKYLFFSTEAHRDEVDEVEFVTKNRSNSYGGGILDFMSGLDLSCNNLTGEIPRE 861

Query: 563  IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
            +G L+ I  LNLSHN L G++  +F+ L  IESLDL +NKL+G+IP + + LN L VF+V
Sbjct: 862  LGMLSSILALNLSHNQLKGSVPKSFSKLSQIESLDLSYNKLSGEIPPEFIGLNFLEVFNV 921

Query: 623  AYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPI-----CRSPVTMLEASTSNEGDD 677
            A+NN+SG++P+M  QF TF ES+Y+ NPFLCG  L         SP +  + S  +E   
Sbjct: 922  AHNNISGRVPDMKEQFGTFGESSYEDNPFLCGPMLKRKCNTSIESPNSPSQPSQESEAKW 981

Query: 678  NLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMW 721
              ID   FF +F  SY++++ G   ILY+NPYWR+RWF  +E W
Sbjct: 982  YDIDHVVFFASFVASYIMILLGFAAILYINPYWRQRWFNFIEEW 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	740
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.559	0.414	0.365	1e-98
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.683	0.524	0.328	5.5e-97
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.697	0.568	0.308	5.8e-92
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.620	0.423	0.334	4.6e-91
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.724	0.549	0.316	3.1e-84
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.894	0.742	0.321	3.7e-71
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.904	0.715	0.309	1.2e-67
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.820	0.484	0.302	2e-60
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.836	0.544	0.312	1.7e-59
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.835	0.591	0.295	1.8e-58

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 1.0e-98, Sum P(2) = 1.0e-98
 Identities = 166/454 (36%), Positives = 230/454 (50%)

Query:   133 LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLI--------- 183
             L  L  L+ L +++N L G++P  LAN+ SL  L +  N   G  S   L          
Sbjct:   278 LTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLR 337

Query:   184 LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKM 243
             LD+ +N +  E   S     P FQL  ++L S   + V  P FL HQ  L  VDLS  ++
Sbjct:   338 LDSQSNSLEVEFETSWK---PKFQLVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQI 392

Query:   244 NGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI 303
             +G FP+WLLENNTKLE L L N+S    F+LP  +H +L  L+VS N F        G I
Sbjct:   393 HGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH-NLLFLNVSVNKFNHLFLQNFGWI 450

Query:   304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
             LP L   N++ N   G++PSS  NM  ++ LDLS+N   G++P     GC NL IL LS+
Sbjct:   451 LPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSH 510

Query:   364 NNLEGHMFSKNFNLTKLSWLLLEDNH-FVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWL 422
             N L G +F +  N T+L W++  DN+ F   I +      SL  L ++NN L+G IP W+
Sbjct:   511 NKLSGEVFPEAANFTRL-WVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWI 569

Query:   423 GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLS--Y-------- 472
             G   GL  + +  N LEG IP +   +  LQ+L +S N +SG +P ++S  Y        
Sbjct:   570 GERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQ 629

Query:   473 -NRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCF 531
              N L+G IPD +  LL +  L L +N L G +P               +N   G IP   
Sbjct:   630 NNNLSGVIPDTL--LLNVIVLDLRNNRLSGNLPEFINTQNISILLLRGNN-FTGQIP--- 683

Query:   532 DNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN 565
                  H+   LS +  +DLS NK  G IP  + N
Sbjct:   684 -----HQFCSLSNIQLLDLSNNKFNGSIPSCLSN 712

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 5.5e-97, Sum P(2) = 5.5e-97
 Identities = 183/557 (32%), Positives = 276/557 (49%)

Query:    26 QELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLE 85
             +EL + TNLE L L  +  + S+     S    LK+L +   + +G +  QG   F +  
Sbjct:   175 KELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQG--KFCTDL 232

Query:    86 YLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMA 145
                + +    LN             ++ L LS      +    L   L  L  L+ L ++
Sbjct:   233 LFSIQSGICELNN------------MQELDLSQNKLVGH----LPSCLTSLTGLRVLDLS 276

Query:   146 NNDLRGSLPWCLANMTSLRTLDVSSNQLTGSIS-------SSPLILDAYNNEINAEITES 198
             +N L G++P  L ++ SL  L +  N   GS S       S+ ++L   +   + ++  S
Sbjct:   277 SNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-S 335

Query:   199 HSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL 258
              S   P FQL  ++L S   + V  P FL HQ  L  VDLS   ++G+ P+WLL NNTKL
Sbjct:   336 ESSWKPKFQLSVIALRSCNMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKL 393

Query:   259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
             + L L N+ L   F++P  +H +L  LDVS N+F    P  IG I P L   N S N   
Sbjct:   394 KVLLLQNN-LFTSFQIPKSAH-NLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQ 451

Query:   319 GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLT 378
              ++PSS GNMN +Q +DLS N   G +P     GC ++ IL LS+N L G +F ++ N T
Sbjct:   452 ENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFT 511

Query:   379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438
              +  L +++N F  +I Q L   ++LE L ++NNNL+G IP W+G L  L  ++I +N L
Sbjct:   512 NILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFL 571

Query:   439 EGPIPVAFCQLDSLQILGISDNNISGSLPSY----------LSYNRLNGSIPDRIDGLLR 488
             +G IP++     SLQ+L +S N++SG +P            L  N+L+G+IPD +  L  
Sbjct:   572 KGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTL--LAN 629

Query:   489 LSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGI 548
             +  L L +N   G++P               +N   G IP        H+   LS +  +
Sbjct:   630 VEILDLRNNRFSGKIPEFINIQNISILLLRGNN-FTGQIP--------HQLCGLSNIQLL 680

Query:   549 DLSCNKLIGDIPPQIGN 565
             DLS N+L G IP  + N
Sbjct:   681 DLSNNRLNGTIPSCLSN 697

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 5.8e-92, Sum P(2) = 5.8e-92
 Identities = 169/547 (30%), Positives = 274/547 (50%)

Query:     3 SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISL-LQSIASIFPSLKS 61
             S   L  L +++ +  E   +    L+  T+L  L+L  ++++  + L+ + ++  +L+ 
Sbjct:   116 SLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL-TNLEL 174

Query:    62 LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
             L +   +++G +  + FP+ K L+ LD+++  I  +  + Q+    M  L+ L L     
Sbjct:   175 LDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEW-QVF-CEMKNLQELDLR---- 228

Query:   122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
             G N    L      L  L+ L +++N L G++P   +++ SL  L +S N   G  S +P
Sbjct:   229 GINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFSLNP 288

Query:   182 LI------LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLED 235
             L       +  ++++ +    +  S   P FQL  L L     + +  P FL +Q  L  
Sbjct:   289 LTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKI--PNFLMYQKNLHV 346

Query:   236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGR 295
             VDLS  +++G  P WLLENN +LE L L N+S    F++P   H +L++LD S NN  G 
Sbjct:   347 VDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVH-NLQVLDFSENNIGGL 404

Query:   296 IPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVN 355
              P   G +LP+L   N S N   G+ PSS G M  +  LDLS N+L+GE+P+     C +
Sbjct:   405 FPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFS 464

Query:   356 LEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
             L IL LS+N   GH   +  N T L  L + +N F  +I   L   + L  L ++NN L 
Sbjct:   465 LSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLE 524

Query:   416 GKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY------ 469
             G++P  L     L ++ +  N L G +P +   LD+  +L + +NN +G +P        
Sbjct:   525 GELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLDN--VLFLHNNNFTGPIPDTFLGSIQ 581

Query:   470 ---LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGL 526
                L  N+L+G+IP  +D    +S L+L  N+L G +P              SDNKL+G 
Sbjct:   582 ILDLRNNKLSGNIPQFVD-TQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGF 640

Query:   527 IPPCFDN 533
             IP CF+N
Sbjct:   641 IPSCFNN 647

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 4.6e-91, Sum P(2) = 4.6e-91
 Identities = 166/496 (33%), Positives = 253/496 (51%)

Query:    83 SLEYLDMNTACIAL-NASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQE 141
             SL+ LD     ++L +  +L I    +  L+ L LS     +N+   L   L  L HL+ 
Sbjct:   333 SLQVLDFKRNQLSLTHEGYLGI--CRLMKLRELDLS-----SNALTSLPYCLGNLTHLRT 385

Query:   142 LHMANNDLRGSLPWCLANMTS-LRTLDVSSNQLTGSISSSPLI----LDAY--NNEINAE 194
             L ++NN L G+L   ++ + S L  L +  N   GS   + L+    L  +  ++++   
Sbjct:   386 LDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVI 445

Query:   195 ITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLEN 254
               ++ S  AP FQLK L LS+    G T   FL HQ  L  VDLSH K+ G FP WL++N
Sbjct:   446 QVQTESSWAPLFQLKMLYLSN-CSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKN 504

Query:   255 NTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISM 314
             NT+L+++ L  +SL    +LPI  H  L++LD+S+N     I  +IG + P+L   N S 
Sbjct:   505 NTRLQTILLSGNSLT-KLQLPILVH-GLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSS 562

Query:   315 NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKN 374
             N   G+IPSS G M  LQ+LD+S+N L G++P     GC +L +L LSNN L+G +FSK+
Sbjct:   563 NHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKH 622

Query:   375 FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
              NLT L  L L+ N+F   + + L K  +L  L +++N  SG +P W+G ++ L Y+ + 
Sbjct:   623 ANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMS 682

Query:   435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSY----------NRLNGSIPDRID 484
              N L+GP P    Q   ++++ IS N+ SGS+P  +++          N   G +P  + 
Sbjct:   683 GNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLF 741

Query:   485 GLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSL 544
                 L  L L +NN  G++                +N     IP             LS 
Sbjct:   742 KAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQ--------LSE 793

Query:   545 LSGIDLSCNKLIGDIP 560
             +  +DLS N+  G IP
Sbjct:   794 VGLLDLSHNQFRGPIP 809

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 3.1e-84, Sum P(2) = 3.1e-84
 Identities = 187/591 (31%), Positives = 278/591 (47%)

Query:     1 MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
             + + +SL TL +  N +   +    +EL N T LE L L  S  + S+ +     F  L+
Sbjct:   158 LNAATSLTTLFIQSNYIGGPLPI--KELKNLTKLELLDLSRSGYNGSIPE-----FTHLE 210

Query:    61 SLSMIDCKVN---GVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLS 117
              L  +D   N    +V  Q      +LE L +  A   L+    + +   M  L+ L L 
Sbjct:   211 KLKALDLSANDFSSLVELQELKVLTNLEVLGL--AWNHLDGPIPKEVFCEMKNLRQLDLR 268

Query:   118 YFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSI 177
                 G      L   L  L  L+ L +++N L G+LP    ++ SL  L +S N   G  
Sbjct:   269 ----GNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFF 324

Query:   178 SSSPLI----LDAYNNEINAEI--TESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQN 231
             S +PL     L  +     +E+   E+ S   P FQL   +L   +      P FL +Q 
Sbjct:   325 SLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALP--FCSLGKIPNFLVYQT 382

Query:   232 KLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNN 291
              L  VDLS  +++G+ P WLLENN +L+ L L N+S    F++P   HK L++LD S N+
Sbjct:   383 NLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSAND 440

Query:   292 FQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI 351
               G +P  IG +LP L   N S N   G++PSS G MN +  LDLS N+ +GE+P  L  
Sbjct:   441 ITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLT 500

Query:   352 GCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN 411
             GC +L  L LS+N+  G +      LT L  L + +N F  EI   L   ++L     +N
Sbjct:   501 GCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASN 560

Query:   412 NNLSGKIPQWLG-NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS-- 468
             N L+G I   +  + + L  +++  N LEG +P +   +  L  L +S N +SG LPS  
Sbjct:   561 NRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSV 620

Query:   469 ---------YLSYNRLNGSIPDRIDGLLRLSHLI-LAHNNLEGEVPVXXXXXXXXXXXXX 518
                      +L  N   G +P     LL  ++++ L +N L G +P              
Sbjct:   621 VNSMYGIKIFLHNNSFTGPLPVT---LLENAYILDLRNNKLSGSIPQFVNTGKMITLLLR 677

Query:   519 SDNKLHGLIPP--CFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567
              +N L G IP   C D T++   R+L      DLS NKL G IPP + +L+
Sbjct:   678 GNN-LTGSIPRKLC-DLTSI---RLL------DLSDNKLNGVIPPCLNHLS 717

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 224/697 (32%), Positives = 343/697 (49%)

Query:    39 LDFSSLHIS-LLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALN 97
             LD SS H+S  +    S F S++ LS++D    G+           L+   +++    L 
Sbjct:   207 LDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQ 266

Query:    98 ASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLP-WC 156
                  + G     L  + LS+   G     +  Q       L+ + ++NN L G  P W 
Sbjct:   267 IVETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQ-----ELRVIDLSNNILSGVFPTWL 321

Query:   157 LANMTSLRTLDVSSNQ---LTGSISSSPL-ILDAYNNEINAEITESHSLTAPNFQLKSLS 212
             L N T L+ L + +N    LT   +   L ILD   N  N ++ +   L   +  L+ L+
Sbjct:   322 LENNTELQALLLQNNSFKTLTLPRTMRRLQILDLSVNNFNNQLPKDVGLILAS--LRHLN 379

Query:   213 LSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPF 272
             LS+    G   P  +     +E +DLS+   +G+ P  L      L  L L ++  +GP 
Sbjct:   380 LSNNEFLG-NMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPI 438

Query:   273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
                     SL  L + NN F G+IP  + + L  LS  ++S N L G+IP   GN  FL+
Sbjct:   439 IRKSSDETSLITLIMDNNMFTGKIPRTLLN-LRMLSVIDLSNNLLTGTIPRWLGNF-FLE 496

Query:   333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL-LEDNHFV 391
             +L +SNN L G IP  L      L +L LS N L G +  ++ +     ++L L +N+  
Sbjct:   497 VLRISNNRLQGAIPPSL-FNIPYLWLLDLSGNFLSGSLPLRSSS--DYGYILDLHNNNLT 553

Query:   392 EEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDS 451
               IP +L   L L  L L NN LSG IP +      +  +++ EN+L G IPV  C L +
Sbjct:   554 GSIPDTLWYGLRL--LDLRNNKLSGNIPLFRST-PSISVVLLRENNLTGKIPVELCGLSN 610

Query:   452 LQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXX 511
             +++L  + N ++ S+PS ++            D     + L+     +  EV        
Sbjct:   611 VRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVS 670

Query:   512 XXXXXXXSDN---KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR 568
                    S +   ++   +   +D   L+ R  L+ + G+DLS N+L G+IP ++G+L R
Sbjct:   671 DRFSLDYSVDFNVQVEFAVKQRYD---LYMRGTLNQMFGLDLSSNELSGNIPEELGDLKR 727

Query:   569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
             +++LNLS N+L+G+I  +F+NLR IESLDL  NKL+G IP QL  L +LVVF+V+YNNLS
Sbjct:   728 VRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLS 787

Query:   629 GKIPEMTTQFATFNESNYKGNPFLCGLPLP-ICRSPVTMLEASTSNEGDDN--LIDMDCF 685
             G IP+   QF TF E +Y GN  LCG P    C    T + +    E DD   L+D+   
Sbjct:   788 GVIPQ-GKQFNTFGEKSYLGNFLLCGSPTKRSCGG--TTISSGKEYEDDDESGLLDIVVL 844

Query:   686 FNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWI 722
             + +  T+YV V+ G ++ L  +  WRR WF LV+ +I
Sbjct:   845 WWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 221/713 (30%), Positives = 352/713 (49%)

Query:    31 FTNLEYLT-LDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRS--QGFPHFKSLEYL 87
             F  L+ L  LD    H   +  I     SLK L ++D   N +       F   +SLEYL
Sbjct:   242 FCKLKNLRDLDLKGNHF--VGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYL 299

Query:    88 DMNTACIALNASFLQIIGASMPFLKYLS-LSYFTFGTNSSRILDQGLCPLVHLQELHMAN 146
              ++      + SF      ++  LK++  L + +     S +L Q    LV L     ++
Sbjct:   300 SLSDN--NFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDL-----SS 352

Query:   147 NDLRGSLP-WCLANMTSLRTLDVSSNQLT----GSISSSPLILDAYNNEINAEITESHSL 201
             N+L G++P W L N   L  L + +N  T     ++  +  I D   N I  +  +    
Sbjct:   353 NNLSGNIPTWLLTNNPELEVLQLQNNSFTIFPIPTMVHNLQIFDFSANNIG-KFPDKMDH 411

Query:   202 TAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESL 261
               PN  ++    ++G++ G  FP  +     +  +DLS+   +G+ P   +     +  L
Sbjct:   412 ALPNL-VRLNGSNNGFQ-GY-FPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFL 468

Query:   262 SLVNDSLAGPFRLPIHSH-KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS 320
              L ++  +G F LP  ++  SL +L + NN F G I   + +    L   ++S N L G+
Sbjct:   469 KLSHNKFSGRF-LPRETNFPSLDVLRMDNNLFTGNIGGGLSNST-MLRILDMSNNGLSGA 526

Query:   321 IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKL 380
             IP       +L  + +SNN L G IP  L +G   L  L LS N   G + S   +   +
Sbjct:   527 IPRWLFEFPYLDYVLISNNFLEGTIPPSL-LGMPFLSFLDLSGNQFSGALPSHVDSELGI 585

Query:   381 SWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG 440
              ++ L +N+F   IP +L K  S++ L L NN LSG IPQ+  +   +  +++  N+L G
Sbjct:   586 -YMFLHNNNFTGPIPDTLLK--SVQILDLRNNKLSGSIPQF-DDTQSINILLLKGNNLTG 641

Query:   441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL-LRLSHLILAHNNL 499
              IP   C L ++++L +SDN ++G +PS LS N   G + +  D + L +    L   +L
Sbjct:   642 SIPRELCDLSNVRLLDLSDNKLNGVIPSCLS-NLSFGRLQE--DAMALNIPPSFL-QTSL 697

Query:   500 EGEV--PVXXXXXXXXXXXXXSDNKLHGLIPPCFDN-TALHE--RRVLSLLSGIDLSCNK 554
             E E+                  + ++       +D+ +   E    +L L+ G+DLS N+
Sbjct:   698 EMELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNE 757

Query:   555 LIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVEL 614
             L G IP ++G+L +++TLNLSHN+L G+I S+F+ L  +ESLDL HN L G IP  L  L
Sbjct:   758 LSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSL 817

Query:   615 NALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP-ICRSPVTMLEASTSN 673
              +L VF V+ NNLSG IP+   QF TF E +Y GNP LCG P    C +  +  EA    
Sbjct:   818 TSLAVFDVSSNNLSGIIPQ-GRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQ 876

Query:   674 EGDDN--LIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIAS 724
             E +D+   IDM  F+ +  + YV  + G+++++  +  WRR W  +V+ +IAS
Sbjct:   877 EEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 2.0e-60, P = 2.0e-60
 Identities = 197/652 (30%), Positives = 320/652 (49%)

Query:    27 ELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEY 86
             EL+   NL+ L L  +S    +   +  +  S++ L++I  ++ G++  +      +L+ 
Sbjct:   235 ELNRLKNLQTLNLGDNSFSGEIPSQLGDLV-SIQYLNLIGNQLQGLIPKR-LTELANLQT 292

Query:    87 LDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNS-SRILDQGLCPL-VHLQELHM 144
             LD+++     N +   +I     F +   L +     N  S  L + +C     L++L +
Sbjct:   293 LDLSS-----N-NLTGVIHEE--FWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFL 344

Query:   145 ANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLIL----DAYNNEINAEITESHS 200
             +   L G +P  ++N  SL+ LD+S+N LTG I  S   L    + Y N  + E T S S
Sbjct:   345 SETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS 404

Query:   201 LTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLES 260
             ++     L+  +L     +G   PK +    KLE + L   + +GE P  +  N T+L+ 
Sbjct:   405 ISNLT-NLQEFTLYHNNLEGKV-PKEIGFLGKLEIMYLYENRFSGEMPVEI-GNCTRLQE 461

Query:   261 LSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS 320
             +    + L+G     I   K L  L +  N   G IPA +G+    ++  +++ N L GS
Sbjct:   462 IDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNC-HQMTVIDLADNQLSGS 520

Query:   321 IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKL 380
             IPSSFG +  L++  + NN L G +P+ L I   NL  +  S+N   G +     + + L
Sbjct:   521 IPSSFGFLTALELFMIYNNSLQGNLPDSL-INLKNLTRINFSSNKFNGSISPLCGSSSYL 579

Query:   381 SWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG 440
             S+ + E N F  +IP  L K  +L+ L L  N  +G+IP+  G ++ L  + I  N L G
Sbjct:   580 SFDVTE-NGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSG 638

Query:   441 PIPVAFCQLDSLQILGISDNNISGSLPSYL-----------SYNRLNGSIPDRIDGLLRL 489
              IPV       L  + +++N +SG +P++L           S N+  GS+P  I  L  +
Sbjct:   639 IIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNI 698

Query:   490 SHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGID 549
               L L  N+L G +P               +N+L G +P             LS L  + 
Sbjct:   699 LTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGK--------LSKLFELR 750

Query:   550 LSCNKLIGDIPPQIGNLTRIQT-LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP 608
             LS N L G+IP +IG L  +Q+ L+LS+NN TG I ST + L  +ESLDL HN+L G++P
Sbjct:   751 LSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVP 810

Query:   609 CQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
              Q+ ++ +L   +++YNNL GK+ +   QF+ +    + GN  LCG PL  C
Sbjct:   811 GQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHC 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 210/673 (31%), Positives = 325/673 (48%)

Query:     7 LNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMID 66
             L  L L  N+    + T+   L   T L  + L ++SL   L  ++ ++  SL+  ++  
Sbjct:    94 LRKLSLRSNSFNGTIPTS---LAYCTRLLSVFLQYNSLSGKLPPAMRNL-TSLEVFNVAG 149

Query:    67 CKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIG--ASMPFLKYLSLSYFTFGTN 124
              +++G +   G P   SL++LD+++     N    QI    A++  L+ L+LSY    T 
Sbjct:   150 NRLSGEI-PVGLP--SSLQFLDISS-----NTFSGQIPSGLANLTQLQLLNLSYNQL-TG 200

Query:   125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS---- 180
                 +   L  L  LQ L +  N L+G+LP  ++N +SL  L  S N++ G I ++    
Sbjct:   201 E---IPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGAL 257

Query:   181 PL--ILDAYNNEINAEITESHSLTAPNFQLKSLSLS-SGYEDGVTFPKFLHHQNKLEDVD 237
             P   +L   NN  +   T   SL   N  L  + L  + + D V      + +  L+ +D
Sbjct:   258 PKLEVLSLSNNNFSG--TVPFSLFC-NTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLD 314

Query:   238 LSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
             L   +++G FP WL  N   L++L +  +  +G     I + K L  L ++NN+  G IP
Sbjct:   315 LQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIP 373

Query:   298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
              EI     SL   +   N+L G IP   G M  L++L L  N  +G +P  + +    LE
Sbjct:   374 VEIKQC-GSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSM-VNLQQLE 431

Query:   358 ILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK 417
              L L  NNL G    +   LT LS L L  N F   +P S+S   +L  L+L+ N  SG+
Sbjct:   432 RLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGE 491

Query:   418 IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS--------- 468
             IP  +GNL  L  + + + ++ G +PV    L ++Q++ +  NN SG +P          
Sbjct:   492 IPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLR 551

Query:   469 Y--LSYNRLNGSIPDRIDGLLRLS-HLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHG 525
             Y  LS N  +G IP    G LRL   L L+ N++ G +P                N+L G
Sbjct:   552 YVNLSSNSFSGEIPQTF-GFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMG 610

Query:   526 LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS 585
              IP   D + L   +VL      DL  N L G+IPP+I   + + +L+L HN+L+G I  
Sbjct:   611 HIPA--DLSRLPRLKVL------DLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPG 662

Query:   586 TFTNLRHIESLDLYHNKLNGKIPCQLVELNA-LVVFSVAYNNLSGKIPEMTTQFATFNES 644
             +F+ L ++  +DL  N L G+IP  L  +++ LV F+V+ NNL G+IP         N S
Sbjct:   663 SFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTS 721

Query:   645 NYKGNPFLCGLPL 657
              + GN  LCG PL
Sbjct:   722 EFSGNTELCGKPL 734

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 1.8e-58, P = 1.8e-58
 Identities = 200/676 (29%), Positives = 314/676 (46%)

Query:    52 IASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFL 111
             +A    S+  L++ +  + G      F    +L ++D++     +N    +  G   P  
Sbjct:    88 VACSLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLS-----MN----RFSGTISPLW 138

Query:   112 -KYLSLSYFTFGTNSS-RILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVS 169
              ++  L YF    N     +   L  L +L  LH+  N L GS+P  +  +T +  + + 
Sbjct:   139 GRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIY 198

Query:   170 SNQLTGSISSS-----PLI-LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTF 223
              N LTG I SS      L+ L  + N ++  I  S     PN  L+ L L      G   
Sbjct:   199 DNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIP-SEIGNLPN--LRELCLDRNNLTG-KI 254

Query:   224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLR 283
             P    +   +  +++   +++GE P  +  N T L++LSL  + L GP    + + K+L 
Sbjct:   255 PSSFGNLKNVTLLNMFENQLSGEIPPEI-GNMTALDTLSLHTNKLTGPIPSTLGNIKTLA 313

Query:   284 LLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343
             +L +  N   G IP E+G+ + S+    IS N L G +P SFG +  L+ L L +N L+G
Sbjct:   314 VLHLYLNQLNGSIPPELGE-MESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSG 372

Query:   344 EIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS 403
              IP  +A     L +L L  NN  G +        KL  L L+DNHF   +P+SL  C S
Sbjct:   373 PIPPGIA-NSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKS 431

Query:   404 LEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463
             L  +    N+ SG I +  G    L +I +  N+  G +   + Q   L    +S+N+I+
Sbjct:   432 LIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSIT 491

Query:   464 GSLPSY-----------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXX 512
             G++P             LS NR+ G +P+ I  + R+S L L  N L G++P        
Sbjct:   492 GAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTN 551

Query:   513 XXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTL 572
                   S N+    IPP  +N        L  L  ++LS N L   IP  +  L+++Q L
Sbjct:   552 LEYLDLSSNRFSSEIPPTLNN--------LPRLYYMNLSRNDLDQTIPEGLTKLSQLQML 603

Query:   573 NLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
             +LS+N L G I S F +L+++E LDL HN L+G+IP    ++ AL    V++NNL G IP
Sbjct:   604 DLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIP 663

Query:   633 EMTTQFATFNESNYKGNPFLCG-LPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTT 691
             +    F       ++GN  LCG +       P ++  +  S++ D NLI           
Sbjct:   664 D-NAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHK-DRNLI----------- 710

Query:   692 SYVIV-IFGIVIILYV 706
              Y++V I G +IIL V
Sbjct:   711 IYILVPIIGAIIILSV 726

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	740
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-52
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-33
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (596), Expect = 3e-65
 Identities = 197/584 (33%), Positives = 287/584 (49%), Gaps = 85/584 (14%)

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMT-SLRTLDVSSNQLTGSISSS 180
           G N S  +   +  L ++Q ++++NN L G +P  +   + SLR L++S+N  TGSI   
Sbjct: 78  GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG 137

Query: 181 PL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDV 236
            +     LD  NN ++ EI                       D  +F       + L+ +
Sbjct: 138 SIPNLETLDLSNNMLSGEI---------------------PNDIGSF-------SSLKVL 169

Query: 237 DLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRI 296
           DL    + G+ PN L  N T LE L+L ++ L G     +   KSL+ + +  NN  G I
Sbjct: 170 DLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 297 PAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQI----------------------- 333
           P EIG  L SL+  ++  N L G IPSS GN+  LQ                        
Sbjct: 229 PYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 334 -LDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE 392
            LDLS+N L+GEIPE L I   NLEIL L +NN  G +     +L +L  L L  N F  
Sbjct: 288 SLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
           EIP++L K  +L  L L+ NNL+G+IP+ L +   L  +I+  N LEG IP +     SL
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 453 QILGISDNNISGSLPSY-----------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG 501
           + + + DN+ SG LPS            +S N L G I  R   +  L  L LA N   G
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Query: 502 EVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP 561
            +P    G  +L+ LDLS N+  G +P    +        LS L  + LS NKL G+IP 
Sbjct: 467 GLP-DSFGSKRLENLDLSRNQFSGAVPRKLGS--------LSELMQLKLSENKLSGEIPD 517

Query: 562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFS 621
           ++ +  ++ +L+LSHN L+G I ++F+ +  +  LDL  N+L+G+IP  L  + +LV  +
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 622 VAYNNLSGKIPEMTTQFATFNESNYKGNPFLCG----LPLPICR 661
           +++N+L G +P  T  F   N S   GN  LCG      LP C+
Sbjct: 578 ISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  195 bits (496), Expect = 4e-52
 Identities = 142/433 (32%), Positives = 217/433 (50%), Gaps = 25/433 (5%)

Query: 238 LSHIKMNGEFPNW---LLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQG 294
           LS+   + +   W      N++++ S+ L   +++G     I     ++ +++SNN   G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 295 RIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCV 354
            IP +I     SL   N+S N   GSIP   G++  L+ LDLSNN L+GEIP  +     
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FS 164

Query: 355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNL 414
           +L++L L  N L G + +   NLT L +L L  N  V +IP+ L +  SL+ ++L  NNL
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 415 SGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY----- 469
           SG+IP  +G LT L ++ +  N+L GPIP +   L +LQ L +  N +SG +P       
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 470 ------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKL 523
                 LS N L+G IP+ +  L  L  L L  NN  G++PV L  L +LQ+L L  NK 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 524 HGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI 583
            G IP       L +   L++L   DLS N L G+IP  + +   +  L L  N+L G I
Sbjct: 345 SGEIP-----KNLGKHNNLTVL---DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 584 LSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNE 643
             +    R +  + L  N  +G++P +  +L  +    ++ NNL G+I        +   
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456

Query: 644 SNYKGNPFLCGLP 656
            +   N F  GLP
Sbjct: 457 LSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  138 bits (348), Expect = 2e-33
 Identities = 151/486 (31%), Positives = 238/486 (48%), Gaps = 32/486 (6%)

Query: 2   GSFSSLNTLCLMDNNLT-EIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           GS  +L TL L +N L+ EI      ++ +F++L+ L L  + L   +  S+ ++  SL+
Sbjct: 137 GSIPNLETLDLSNNMLSGEI----PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLE 191

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLE--YLDMNTACIALNASFLQIIGASMPFLKYLSLSY 118
            L++   ++ G +  +     KSL+  YL  N     L+      IG  +  L +L L Y
Sbjct: 192 FLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN----LSGEIPYEIG-GLTSLNHLDLVY 245

Query: 119 FTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSIS 178
                N +  +   L  L +LQ L +  N L G +P  + ++  L +LD+S N L+G I 
Sbjct: 246 ----NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 179 SSPL------ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNK 232
              +      IL  ++N    +I  + + + P  Q+  L L S    G   PK L   N 
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQV--LQLWSNKFSG-EIPKNLGKHNN 357

Query: 233 LEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF 292
           L  +DLS   + GE P  L  ++  L  L L ++SL G     + + +SLR + + +N+F
Sbjct: 358 LTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG 352
            G +P+E    LP +   +IS N L G I S   +M  LQ+L L+ N   G +P+  + G
Sbjct: 417 SGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFG 473

Query: 353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
              LE L LS N   G +  K  +L++L  L L +N    EIP  LS C  L  L L++N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSY 472
            LSG+IP     +  L  + + +N L G IP     ++SL  + IS N++ GSLPS  ++
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Query: 473 NRLNGS 478
             +N S
Sbjct: 594 LAINAS 599

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  135 bits (342), Expect = 8e-33
 Identities = 97/268 (36%), Positives = 138/268 (51%), Gaps = 18/268 (6%)

Query: 406 GLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVA-FCQLDSLQILGISDNNISG 464
            + L+  N+SGKI   +  L  +Q I +  N L GPIP   F    SL+ L +S+NN +G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 465 SLPSY---------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQL 515
           S+P           LS N L+G IP+ I     L  L L  N L G++P  L  L  L+ 
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLS 575
           L L+ N+L G IP         E   +  L  I L  N L G+IP +IG LT +  L+L 
Sbjct: 193 LTLASNQLVGQIP--------RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 576 HNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMT 635
           +NNLTG I S+  NL++++ L LY NKL+G IP  +  L  L+   ++ N+LSG+IPE+ 
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 636 TQFATFNESNYKGNPFLCGLPLPICRSP 663
            Q       +   N F   +P+ +   P
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLP 332

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 9e-15
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 13/135 (9%)

Query: 531 FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL 590
           FD+T          + G+ L    L G IP  I  L  +Q++NLS N++ G I  +  ++
Sbjct: 411 FDSTKGK-----WFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465

Query: 591 RHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPE----MTTQFATFNESNY 646
             +E LDL +N  NG IP  L +L +L + ++  N+LSG++P          A+FN ++ 
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD- 524

Query: 647 KGNPFLCGLP-LPIC 660
             N  LCG+P L  C
Sbjct: 525 --NAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 13/107 (12%)

Query: 404 LEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463
           ++GL L+N  L G IP  +  L  LQ I +  N + G IP +   + SL++L        
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD------- 472

Query: 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGL 510
                 LSYN  NGSIP+ +  L  L  L L  N+L G VP  L G 
Sbjct: 473 ------LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 8e-12
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
           ++ L L N  L G     I   + L+ +++S N+ +G IP  +G I  SL   ++S N+ 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSF 478

Query: 318 DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHL 349
           +GSIP S G +  L+IL+L+ N L+G +P  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 4e-11
 Identities = 30/86 (34%), Positives = 52/86 (60%)

Query: 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
           IP  +SK   L+ ++L+ N++ G IP  LG++T L+ + +  N   G IP +  QL SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 454 ILGISDNNISGSLPSYLSYNRLNGSI 479
           IL ++ N++SG +P+ L    L+ + 
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRAS 519

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 285 LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE 344
           L + N   +G IP +I   L  L S N+S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 345 IPEHLAIGCVNLEILVLSNNNLEG 368
           IPE L     +L IL L+ N+L G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 475 LNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNT 534
           L G IP+ I  L  L  + L+ N++ G +P  L  +  L++LDLS N  +G IP      
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ- 488

Query: 535 ALHERRVLSLLSGIDLSCNKLIGDIPPQIG 564
                  L+ L  ++L+ N L G +P  +G
Sbjct: 489 -------LTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 9e-07
 Identities = 32/87 (36%), Positives = 43/87 (49%)

Query: 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI 418
           L L N  L G + +    L  L  + L  N     IP SL    SLE L L+ N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 419 PQWLGNLTGLQYIIIPENHLEGPIPVA 445
           P+ LG LT L+ + +  N L G +P A
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 257 KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA 316
            L+S++L  +S+ G     + S  SL +LD+S N+F G IP  +G  L SL   N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 317 LDGSIPSSFG 326
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
           L HLQ ++++ N +RG++P  L ++TSL  LD+S N   GSI  S
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 12/249 (4%)

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN 311
           L   T L SL L N+++     L      +L+ LD+S+N  +  +P+ + + LP+L + +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 312 ISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMF 371
           +S N L   +P    N++ L  LDLS N ++ ++P  +      LE L LSNN++   + 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELL 225

Query: 372 SKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYI 431
           S   NL  LS L L +N  +E++P+S+    +LE L L+NN +S      LG+LT L+ +
Sbjct: 226 SSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLREL 282

Query: 432 IIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSH 491
            +  N L   +P+    L  L++L    N +       L  N +  +     +G      
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLL---NLLLTLKALELKLNSILLNNNILSNGETSSPE 339

Query: 492 LILAHNNLE 500
            +    +L 
Sbjct: 340 ALSILESLN 348

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 548 IDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           +DLS N+L   IP      L  ++ L+LS NNLT      F+ L  + SLDL  N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 56/269 (20%), Positives = 94/269 (34%), Gaps = 50/269 (18%)

Query: 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWL-----LENNTKLESLSLVNDSL--AGPFRLP- 275
              L  Q  L+++ LS  +              L     L+ L L +++L   G   L  
Sbjct: 44  ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDIL----PSLSSFNISMNALDG----SIPSSFGN 327
           +    SL+ L ++NN    R    +   L    P+L    +  N L+G    ++  +   
Sbjct: 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163

Query: 328 MNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLED 387
              L+ L+L+NN +       LA G                     N NL  L    L +
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEG------------------LKANCNLEVLD---LNN 202

Query: 388 NHFVEEIPQSLSKCL----SLEGLHLNNNNLSGKI-----PQWLGNLTGLQYIIIPENHL 438
           N   +E   +L++ L    SLE L+L +NNL+           L     L  + +  N +
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

Query: 439 EGPIPVAFCQL----DSLQILGISDNNIS 463
                    ++    +SL  L +  N   
Sbjct: 263 TDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
           +L+ L L+NN L+         L  L+ + +  N+L    P AF  L SL+ L +S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627
            +++L+LS+N LT      F  L +++ LDL  N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG---HMFSKNFNLTKLSWLLLED 387
           L+ LDLSNN LT  IP+    G  NL++L LS NNL       FS    L  L  L L  
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 388 NHF 390
           N+ 
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN 365
           +L S ++S N L      +F  +  L++LDLS N+LT  I      G  +L  L LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 366 L 366
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 227 LHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD 286
           L H   L+ ++LS   + G  P   L + T LE L L  +S  G     +    SLR+L+
Sbjct: 441 LRH---LQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 287 VSNNNFQGRIPAEIGDILPSLSSFNISMNA 316
           ++ N+  GR+PA +G  L   +SFN + NA
Sbjct: 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
           +L+ LD+SNN     IP      LP+L   ++S N L    P +F  +  L+ LDLS N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 341 L 341
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 62/289 (21%), Positives = 93/289 (32%), Gaps = 95/289 (32%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF 390
           L+ L LS N  TG IP  L                      +K   L +L    L DN  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQ---------------SLLQGLTKGCGLQELD---LSDNAL 93

Query: 391 VEEIP---QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
             +     +SL +  SL+ L LNNN L            GL+ +       +G   +   
Sbjct: 94  GPDGCGVLESLLRSSSLQELKLNNNGLGD---------RGLRLLA------KGLKDLP-P 137

Query: 448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLR----LSHLILAHNNLEGEV 503
            L+ L                 L  NRL G+  + +   LR    L  L LA+N +    
Sbjct: 138 ALEKLV----------------LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181

Query: 504 PVQLC----GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDI 559
              L         L++LDL++N L                         D      + + 
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLT------------------------DEGA-SALAET 216

Query: 560 PPQIGNLTRIQTLNLSHNNLTGTILSTF-----TNLRHIESLDLYHNKL 603
              + +L   + LNL  NNLT    +       +    + +L L  N +
Sbjct: 217 LASLKSL---EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	740
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PLN03150	623	hypothetical protein; Provisional	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG4341	483	consensus F-box protein containing LRR [General fu	98.54
KOG4341	483	consensus F-box protein containing LRR [General fu	98.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.41
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.94
KOG4308	478	consensus LRR-containing protein [Function unknown	93.34
KOG4308	478	consensus LRR-containing protein [Function unknown	92.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.6
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.53
smart00370	26	LRR Leucine-rich repeats, outliers.	89.03
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.03
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.31
smart00370	26	LRR Leucine-rich repeats, outliers.	88.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.07
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.92

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.8e-60  Score=563.15  Aligned_cols=542  Identities=31%  Similarity=0.464  Sum_probs=420.8

Q ss_pred             CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858           58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV  137 (740)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~  137 (740)
                      +++.|+++++.+.+..+. .+..+++|++|+|++|  .+.+.++..+...+++|++|++++|.+.   +.+|.   ..++
T Consensus        70 ~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---~~~p~---~~l~  140 (968)
T PLN00113         70 RVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFT---GSIPR---GSIP  140 (968)
T ss_pred             cEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCccc---cccCc---cccC
Confidence            344444444444433322 2444444444444444  2233344433322444444444444443   22222   2234


Q ss_pred             CCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCC
Q 038858          138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGY  217 (740)
Q Consensus       138 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  217 (740)
                      +|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+                     ....+|+.|++ .++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---------------------~~l~~L~~L~L-~~n  198 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL---------------------TNLTSLEFLTL-ASN  198 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh---------------------hhCcCCCeeec-cCC
Confidence            44444444444444444444444444444444444443333221                     22224444444 333


Q ss_pred             CCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858          218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP  297 (740)
Q Consensus       218 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  297 (740)
                      ...+..|..+..+++|+.|++++|.+.+.+|..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence            3334455677778889999999998888888876 788999999999998888888888889999999999999888888


Q ss_pred             hhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCC
Q 038858          298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL  377 (740)
Q Consensus       298 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  377 (740)
                      ..+.. +++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+..+..+..+
T Consensus       278 ~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        278 PSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             hhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCC
Confidence            87776 78999999999999888888899999999999999999877776654 78999999999999988888888889


Q ss_pred             CCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEec
Q 038858          378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGI  457 (740)
Q Consensus       378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  457 (740)
                      ++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.|++
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  435 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI  435 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence            99999999999998888888888899999999999998888888999999999999999999888989999999999999


Q ss_pred             cCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858          458 SDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH  537 (740)
Q Consensus       458 ~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  537 (740)
                      ++|.+.+             ..|..+..+++|+.|++++|.+.+..|..+. .++|+.|++++|++.+..|..+..    
T Consensus       436 s~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~----  497 (968)
T PLN00113        436 SNNNLQG-------------RINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGS----  497 (968)
T ss_pred             cCCcccC-------------ccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhh----
Confidence            9998874             4455567789999999999999888877654 589999999999999988887766    


Q ss_pred             hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858          538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL  617 (740)
Q Consensus       538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  617 (740)
                          +++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|
T Consensus       498 ----l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  573 (968)
T PLN00113        498 ----LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL  573 (968)
T ss_pred             ----hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence                6799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       618 ~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      +++++++|++++.+|.. +++.++...++.|||..|+-+
T Consensus       574 ~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        574 VQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            99999999999999985 778888889999999999743

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.8e-57  Score=538.54  Aligned_cols=522  Identities=32%  Similarity=0.483  Sum_probs=476.8

Q ss_pred             CCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCC
Q 038858           81 FKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANM  160 (740)
Q Consensus        81 l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l  160 (740)
                      ..+++.|++++|  .+.+..+..+.. +++|++|++++|.+.   +.+|...+..+++|++|++++|.+.+..|.  +.+
T Consensus        68 ~~~v~~L~L~~~--~i~~~~~~~~~~-l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l  139 (968)
T PLN00113         68 SSRVVSIDLSGK--NISGKISSAIFR-LPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI  139 (968)
T ss_pred             CCcEEEEEecCC--CccccCChHHhC-CCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence            458999999999  556777777777 999999999999987   788885566999999999999999887774  568


Q ss_pred             CCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccC
Q 038858          161 TSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSH  240 (740)
Q Consensus       161 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  240 (740)
                      ++|++|++++|.+.+.+|..+                     ....+|+.|++ +++...+..|..+.++++|+.|++++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~---------------------~~l~~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~  197 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDI---------------------GSFSSLKVLDL-GGNVLVGKIPNSLTNLTSLEFLTLAS  197 (968)
T ss_pred             CCCCEEECcCCcccccCChHH---------------------hcCCCCCEEEC-ccCcccccCChhhhhCcCCCeeeccC
Confidence            999999999999987777543                     44569999999 66677778888999999999999999


Q ss_pred             CCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCccc
Q 038858          241 IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS  320 (740)
Q Consensus       241 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~  320 (740)
                      |.+.+..|..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.
T Consensus       198 n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        198 NQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             CCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeecc
Confidence            99998899886 88999999999999999888888999999999999999999888887776 89999999999999989


Q ss_pred             CCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCcccccc
Q 038858          321 IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSK  400 (740)
Q Consensus       321 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  400 (740)
                      .|..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..
T Consensus       276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        276 IPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             CchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            999999999999999999999878776654 7999999999999999888888889999999999999999899999999


Q ss_pred             CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858          401 CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP  480 (740)
Q Consensus       401 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  480 (740)
                      +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++             ..|
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-------------~~p  421 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-------------ELP  421 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-------------ECC
Confidence            9999999999999998899999999999999999999999999999999999999999998874             566


Q ss_pred             hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858          481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP  560 (740)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  560 (740)
                      ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..         ++|+.|++++|++.+..|
T Consensus       422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------~~L~~L~ls~n~l~~~~~  492 (968)
T PLN00113        422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------KRLENLDLSRNQFSGAVP  492 (968)
T ss_pred             hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------ccceEEECcCCccCCccC
Confidence            77889999999999999999999988999999999999999999888876643         689999999999999999


Q ss_pred             cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccC
Q 038858          561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT  640 (740)
Q Consensus       561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  640 (740)
                      ..+..+++|+.|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..
T Consensus       493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  572 (968)
T PLN00113        493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES  572 (968)
T ss_pred             hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             CCccccCCCCCCCCCCC
Q 038858          641 FNESNYKGNPFLCGLPL  657 (740)
Q Consensus       641 l~~~~~~~Np~~C~~~~  657 (740)
                      |+.+++++|++.+..|.
T Consensus       573 L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        573 LVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cCEEeccCCcceeeCCC
Confidence            99999999999987663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-44  Score=357.08  Aligned_cols=400  Identities=23%  Similarity=0.266  Sum_probs=358.2

Q ss_pred             CCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEE
Q 038858          256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD  335 (740)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  335 (740)
                      +.-+.|++++|++.......|.++++|+++++.+|.++ .+|..... ..+++.|+|.+|.|+.+..+.++.++.|+.||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            34567999999999888888899999999999999998 88875544 66799999999999988888999999999999


Q ss_pred             eecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCc
Q 038858          336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS  415 (740)
Q Consensus       336 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  415 (740)
                      |+.|.|+ +++...|..-.++++|+|++|+|+......|.++.+|.+|.|+.|+++...+..|..+++|+.|++..|+|.
T Consensus       156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            9999998 888777756678999999999999999899999999999999999999988889999999999999999997


Q ss_pred             ccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcc
Q 038858          416 GKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA  495 (740)
Q Consensus       416 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~  495 (740)
                      ...-..|.++++|+.|.+..|.+......+|..+.++++|+++.|++..             .-..|+.++++|+.|+++
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------------vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------------VNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-------------hhcccccccchhhhhccc
Confidence            4445688999999999999999998888899999999999999998872             334678889999999999


Q ss_pred             cccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCc
Q 038858          496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLS  575 (740)
Q Consensus       496 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  575 (740)
                      +|.|....++.++.+++|++|+|+.|+|+...++.|..        ++.|++|+|++|++..+...+|..+++|++|||+
T Consensus       302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhheeecchhhhcccceeEeccccccccCChhHHHH--------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            99999889999999999999999999999888888877        7899999999999998888899999999999999


Q ss_pred             CCcCCCccc---hhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCC
Q 038858          576 HNNLTGTIL---STFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFL  652 (740)
Q Consensus       576 ~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~  652 (740)
                      +|.++..+.   ..|.++++|+.|++.+|++..+....|..++.|+.||+.+|.+...-|++|.++ .|+++-+.--.++
T Consensus       374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl  452 (873)
T KOG4194|consen  374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL  452 (873)
T ss_pred             CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence            999987655   458899999999999999998888899999999999999999999999999999 8999999999999


Q ss_pred             CCCCC-----------------CCCCCCCcccccCCCCCCCCccc
Q 038858          653 CGLPL-----------------PICRSPVTMLEASTSNEGDDNLI  680 (740)
Q Consensus       653 C~~~~-----------------~~c~~~~~~~~~~~~~~~~~~~~  680 (740)
                      |+|++                 ..|+.|+...++.+...+.....
T Consensus       453 CDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lv  497 (873)
T KOG4194|consen  453 CDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLV  497 (873)
T ss_pred             EeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhce
Confidence            99974                 26999999888777666554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-39  Score=322.11  Aligned_cols=373  Identities=23%  Similarity=0.253  Sum_probs=325.9

Q ss_pred             cccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEe
Q 038858          207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD  286 (740)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  286 (740)
                      .-+.|++ +++.+....+.++.++++|+.+++.+|.++ .+|... +...+++.|+|.+|.|+.+....+..++.|+.||
T Consensus        79 ~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            5667888 677777777889999999999999999998 777753 6667799999999999998888899999999999


Q ss_pred             ccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccc
Q 038858          287 VSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL  366 (740)
Q Consensus       287 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  366 (740)
                      |+.|.++ .+|..-+..-.++++|+|++|.|+......|.++.+|..|.|++|+++ .+|...|+.+++|+.|+|..|+|
T Consensus       156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence            9999998 787776665678999999999999988899999999999999999999 99999998899999999999999


Q ss_pred             cccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccc
Q 038858          367 EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAF  446 (740)
Q Consensus       367 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  446 (740)
                      .-...-.|.++++|+.|.+..|++.....++|..+.++++|+++.|++...-.+++.+++.|+.|++++|.|..+.++++
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence            87767789999999999999999998888999999999999999999998788899999999999999999998889999


Q ss_pred             cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCC
Q 038858          447 CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGL  526 (740)
Q Consensus       447 ~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  526 (740)
                      ..+++|++|+++.|+++             ...+..|..+..|++|+|+.|.+.......|..+.+|++|||+.|.++..
T Consensus       314 sftqkL~~LdLs~N~i~-------------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRIT-------------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC  380 (873)
T ss_pred             hhcccceeEeccccccc-------------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence            99999999999999987             24456788899999999999999988888899999999999999998865


Q ss_pred             CCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcC
Q 038858          527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL  603 (740)
Q Consensus       527 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  603 (740)
                      +...-     ..+..+++|+.|++.+|++..+...+|.++++|+.|||.+|.|..+.+++|..+ .|++|.++.-.+
T Consensus       381 IEDaa-----~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  381 IEDAA-----VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             Eecch-----hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            44321     122337788888888888886666788888888888888888888888888888 888887754433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-39  Score=311.62  Aligned_cols=368  Identities=26%  Similarity=0.360  Sum_probs=171.5

Q ss_pred             chhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhc
Q 038858          224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI  303 (740)
Q Consensus       224 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  303 (740)
                      |..+.++.++..+++.+|.+. ..|+... +++.|++|+.-.|.+.. .|..++.+.+|..|++..|++. .+| .+. .
T Consensus       153 p~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~-g  226 (565)
T KOG0472|consen  153 PEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFP-G  226 (565)
T ss_pred             chHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCC-c
Confidence            334444555666666666665 3333322 25556666555554442 3445555555555666666555 444 222 2


Q ss_pred             CCCCcEEEccCCcCcccCCcc-ccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCe
Q 038858          304 LPSLSSFNISMNALDGSIPSS-FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSW  382 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  382 (740)
                      |..|++|.++.|.|. .+|.+ ...++.+.+||+.+|+++ +.|..+. -+.+|++||+++|.+++. +..++++ .|+.
T Consensus       227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is~L-p~sLgnl-hL~~  301 (565)
T KOG0472|consen  227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDISSL-PYSLGNL-HLKF  301 (565)
T ss_pred             cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccccC-Ccccccc-eeee
Confidence            455555555555555 23322 235555556666666655 5555554 355555666665555543 2334455 5555


Q ss_pred             EEccCCcccccCccccccCC--CCCeEE-------ccCCcC---c-cc-CCC---CCCCccCcceeeccCCcccCCCCcc
Q 038858          383 LLLEDNHFVEEIPQSLSKCL--SLEGLH-------LNNNNL---S-GK-IPQ---WLGNLTGLQYIIIPENHLEGPIPVA  445 (740)
Q Consensus       383 L~l~~n~~~~~~~~~~~~l~--~L~~L~-------l~~n~i---~-~~-~~~---~l~~l~~L~~L~l~~n~~~~~~~~~  445 (740)
                      |.+.+|++.++-.+-+.+-+  -|++|.       ++...-   + .. .+.   ......+.+.|++++-+++.++.+.
T Consensus       302 L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEV  381 (565)
T KOG0472|consen  302 LALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEV  381 (565)
T ss_pred             hhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHH
Confidence            55555554322111110000  011110       000000   0 00 000   1112334455555555555333333


Q ss_pred             ccCC--CCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcE-EEcccccccccccccccCCCcccEEeCCCcc
Q 038858          446 FCQL--DSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSH-LILAHNNLEGEVPVQLCGLNQLQLLDLSDNK  522 (740)
Q Consensus       446 ~~~~--~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  522 (740)
                      |..-  .-....++++|++.              .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++|.
T Consensus       382 fea~~~~~Vt~VnfskNqL~--------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~  446 (565)
T KOG0472|consen  382 FEAAKSEIVTSVNFSKNQLC--------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNL  446 (565)
T ss_pred             HHHhhhcceEEEecccchHh--------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccch
Confidence            3221  12445555555554              44444444433332 333333332 455555555555555555555


Q ss_pred             ccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858          523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK  602 (740)
Q Consensus       523 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  602 (740)
                      +.+ .|..+..        +-.|+.||++.|++. ..|..+..+..|+.+-.++|++....++.+.++.+|..|||.+|.
T Consensus       447 Ln~-LP~e~~~--------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  447 LND-LPEEMGS--------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             hhh-cchhhhh--------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            542 2323322        234555555555554 444444444445555555555555555555555555555555555


Q ss_pred             CCccCchhhhcCCCCCEEEccCCccc
Q 038858          603 LNGKIPCQLVELNALVVFSVAYNNLS  628 (740)
Q Consensus       603 l~~~~~~~~~~l~~L~~L~l~~N~l~  628 (740)
                      +. .+|..++++.+|++|++++|++.
T Consensus       517 lq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  517 LQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hh-hCChhhccccceeEEEecCCccC
Confidence            54 44445555555555555555555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.3e-39  Score=309.51  Aligned_cols=389  Identities=26%  Similarity=0.376  Sum_probs=217.1

Q ss_pred             hhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCC
Q 038858          226 FLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP  305 (740)
Q Consensus       226 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  305 (740)
                      .++.+..++.++..+|++. ..|+.+ ..+.++..+++.+|++....+..+. ++.|++||...|.+. .+|+.++. +.
T Consensus       132 ~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~  206 (565)
T KOG0472|consen  132 SIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LE  206 (565)
T ss_pred             hHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hh
Confidence            3444445555555555555 444443 3455555555555555443333333 555555555555544 55555444 44


Q ss_pred             CCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEc
Q 038858          306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLL  385 (740)
Q Consensus       306 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  385 (740)
                      +|+-|++..|++. ..| .|.+|..|+++.++.|.+. .+|.....+++++..||++.|+++.. |..+.-+.+|+.||+
T Consensus       207 ~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  207 SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDL  282 (565)
T ss_pred             hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcc
Confidence            5555555555554 233 3555555555555555554 55555444455555555555554432 222333444444444


Q ss_pred             cCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCc--cCcceeec--cCCccc---------CC-CCcc---ccC
Q 038858          386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL--TGLQYIII--PENHLE---------GP-IPVA---FCQ  448 (740)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l--~~L~~L~l--~~n~~~---------~~-~~~~---~~~  448 (740)
                      ++|.+++ .|..++++ .|+.|.+.+|++..+-.+.+.+=  .-|++|.=  ..-.++         .. .+..   ...
T Consensus       283 SNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~  360 (565)
T KOG0472|consen  283 SNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA  360 (565)
T ss_pred             cCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence            4444432 22334444 44444444444431111111000  00111100  000000         00 0000   112


Q ss_pred             CCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcccc---CcEEEcccccccccccccccCCCcccE-EeCCCcccc
Q 038858          449 LDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLR---LSHLILAHNNLEGEVPVQLCGLNQLQL-LDLSDNKLH  524 (740)
Q Consensus       449 ~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~  524 (740)
                      +.+.+.|++++-+++              .+|+....-..   .+..+++.|.+. ..|..+..+..+.+ +.+++|.+ 
T Consensus       361 ~i~tkiL~~s~~qlt--------------~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-  424 (565)
T KOG0472|consen  361 IITTKILDVSDKQLT--------------LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-  424 (565)
T ss_pred             hhhhhhhcccccccc--------------cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-
Confidence            234444444444443              33332222222   455666666665 44544444444332 33444433 


Q ss_pred             CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          525 GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       525 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      +.+|..        +..+++|+.|++++|.+. .+|..++.+..|+.|+++.|++. ..|.....+..++.+-.++|++.
T Consensus       425 sfv~~~--------l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~  494 (565)
T KOG0472|consen  425 SFVPLE--------LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG  494 (565)
T ss_pred             ccchHH--------HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence            244433        344789999999999998 78888999999999999999998 67888888888888888899999


Q ss_pred             ccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCC
Q 038858          605 GKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFL  652 (740)
Q Consensus       605 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~  652 (740)
                      ...|..+..+..|++||+.+|.+...+|. ++.+++++++.+.||||.
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence            88888799999999999999999966555 699999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=4e-35  Score=309.77  Aligned_cols=484  Identities=25%  Similarity=0.296  Sum_probs=277.6

Q ss_pred             EECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEc
Q 038858           37 LTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSL  116 (740)
Q Consensus        37 L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~L  116 (740)
                      +|++.+.+.-. +..+.. -..++.|++.+|.+. ..|.+...+..+|+.||+++|++   ..++..+.. +++|+.|++
T Consensus         3 vd~s~~~l~~i-p~~i~~-~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~---~~fp~~it~-l~~L~~ln~   75 (1081)
T KOG0618|consen    3 VDASDEQLELI-PEQILN-NEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI---SSFPIQITL-LSHLRQLNL   75 (1081)
T ss_pred             cccccccCccc-chhhcc-HHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc---ccCCchhhh-HHHHhhccc
Confidence            45566655433 443333 234778888887765 33344455555688888888754   467777777 788888888


Q ss_pred             cCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcc
Q 038858          117 SYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEIT  196 (740)
Q Consensus       117 s~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~  196 (740)
                      +.|.+.    ..|. ..+++.+|+++.|.+|.+. ..|..+..+++|++|++++|.+. .                    
T Consensus        76 s~n~i~----~vp~-s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~--------------------  128 (1081)
T KOG0618|consen   76 SRNYIR----SVPS-SCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-P--------------------  128 (1081)
T ss_pred             chhhHh----hCch-hhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-C--------------------
Confidence            887765    5554 6777788888888888776 67777888888888888888764 2                    


Q ss_pred             cccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCC
Q 038858          197 ESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPI  276 (740)
Q Consensus       197 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  276 (740)
                                                +|..+..+..++.+..++|.-....     +.. .++.+++..+.+.+.+...+
T Consensus       129 --------------------------~Pl~i~~lt~~~~~~~s~N~~~~~l-----g~~-~ik~~~l~~n~l~~~~~~~i  176 (1081)
T KOG0618|consen  129 --------------------------IPLVIEVLTAEEELAASNNEKIQRL-----GQT-SIKKLDLRLNVLGGSFLIDI  176 (1081)
T ss_pred             --------------------------CchhHHhhhHHHHHhhhcchhhhhh-----ccc-cchhhhhhhhhcccchhcch
Confidence                                      2223344445555556665211111     111 15556666665555555444


Q ss_pred             CCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccC
Q 038858          277 HSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNL  356 (740)
Q Consensus       277 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  356 (740)
                      ..+..  .|++.+|.+. ..  ... .+++|+.|....|++....    -.-++|+.|+.++|.+. .+....  .-.+|
T Consensus       177 ~~l~~--~ldLr~N~~~-~~--dls-~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl  243 (1081)
T KOG0618|consen  177 YNLTH--QLDLRYNEME-VL--DLS-NLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHP--VPLNL  243 (1081)
T ss_pred             hhhhe--eeecccchhh-hh--hhh-hccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccc--ccccc
Confidence            44444  4666666554 11  111 1456666666666554221    12345666666666665 222211  13456


Q ss_pred             cEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCC
Q 038858          357 EILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN  436 (740)
Q Consensus       357 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  436 (740)
                      +++++++|++...+ +.+..+.+|+.+...+|.+. .+|..+...++|+.|.+..|.+. .+|....+++.|++|++..|
T Consensus       244 ~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  244 QYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             eeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence            66666666665544 55555666666666666663 33444555566666666666665 44555555666666666666


Q ss_pred             cccCCCCccccCCC-CccEEeccCCcCCCCCCCCCCCCcCCccCch-hhhccccCcEEEcccccccccccccccCCCccc
Q 038858          437 HLEGPIPVAFCQLD-SLQILGISDNNISGSLPSYLSYNRLNGSIPD-RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQ  514 (740)
Q Consensus       437 ~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  514 (740)
                      ++....+..+.... +|+.|+.+.|++.              ..|. .=..+..|+.|.+.+|.++...-..+.+.++|+
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~--------------~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLS--------------TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhcccc--------------ccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence            66533332232222 2555555555554              1110 001234566677777777665555666666777


Q ss_pred             EEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCc
Q 038858          515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIE  594 (740)
Q Consensus       515 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  594 (740)
                      .|+|++|++...+...+..        ++.|++|+||+|+++ .+|+.+..+..|++|...+|.+.. .| .+..++.|+
T Consensus       387 VLhLsyNrL~~fpas~~~k--------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~  455 (1081)
T KOG0618|consen  387 VLHLSYNRLNSFPASKLRK--------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLK  455 (1081)
T ss_pred             eeeecccccccCCHHHHhc--------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcce
Confidence            7777777665444433333        556677777777766 455666666777777776666663 33 666667777


Q ss_pred             EEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858          595 SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL  627 (740)
Q Consensus       595 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  627 (740)
                      .+|+|.|.++...-..-...++|++||+++|.-
T Consensus       456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             EEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            777777766533222222226677777777753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-34  Score=305.46  Aligned_cols=508  Identities=24%  Similarity=0.268  Sum_probs=303.7

Q ss_pred             EEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEe
Q 038858            9 TLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLD   88 (740)
Q Consensus         9 ~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~   88 (740)
                      .+|.|+..+.-+ |   ..+-.-..+..|+++.|-+...-.+.+.. .-+|+.|++++|.+. ..|. .+..+.+|+.|+
T Consensus         2 ~vd~s~~~l~~i-p---~~i~~~~~~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln   74 (1081)
T KOG0618|consen    2 HVDASDEQLELI-P---EQILNNEALQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLN   74 (1081)
T ss_pred             CcccccccCccc-c---hhhccHHHHHhhhccccccccCchHHhhh-eeeeEEeeccccccc-cCCc-hhhhHHHHhhcc
Confidence            356666666555 2   33444445888888888765544555555 445999999999887 4443 377888999999


Q ss_pred             cCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 038858           89 MNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV  168 (740)
Q Consensus        89 L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  168 (740)
                      ++.|.|.   ..+..... +.+|++|+|.+|...    .+|. .+..+++|++|+++.|.+. ..|..+..++.++.++.
T Consensus        75 ~s~n~i~---~vp~s~~~-~~~l~~lnL~~n~l~----~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~  144 (1081)
T KOG0618|consen   75 LSRNYIR---SVPSSCSN-MRNLQYLNLKNNRLQ----SLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAA  144 (1081)
T ss_pred             cchhhHh---hCchhhhh-hhcchhheeccchhh----cCch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhh
Confidence            9998664   44566666 889999999988775    6666 8888999999999999887 67888888888888888


Q ss_pred             cCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCc
Q 038858          169 SSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFP  248 (740)
Q Consensus       169 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  248 (740)
                      ++|.....++..                          .++.+++ ..+...+.++..+..+..  .|++.+|.+. ...
T Consensus       145 s~N~~~~~lg~~--------------------------~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d  194 (1081)
T KOG0618|consen  145 SNNEKIQRLGQT--------------------------SIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD  194 (1081)
T ss_pred             hcchhhhhhccc--------------------------cchhhhh-hhhhcccchhcchhhhhe--eeecccchhh-hhh
Confidence            888322122110                          2344444 333333344444444444  5777777765 111


Q ss_pred             hHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCC
Q 038858          249 NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNM  328 (740)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  328 (740)
                         ...+++|+.|....|++.....    ..++|+.|+.+.|.++ ......  ...+++++++++|+++ ..|+++..+
T Consensus       195 ---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~  263 (1081)
T KOG0618|consen  195 ---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGAC  263 (1081)
T ss_pred             ---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhc
Confidence               2566777777777766553221    2356777777777665 221111  1346777777777776 355777777


Q ss_pred             CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCC-CCeE
Q 038858          329 NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS-LEGL  407 (740)
Q Consensus       329 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L  407 (740)
                      .+|+.++..+|.++ .+|..++ ...+|+.|.+..|.+.... .....++.|++|++..|.+....+..+..... |..|
T Consensus       264 ~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l  340 (1081)
T KOG0618|consen  264 ANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL  340 (1081)
T ss_pred             ccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhhCC-CcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence            77777777777775 6666655 4566666666666665432 33344566666666666655433322322222 4445


Q ss_pred             EccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccc
Q 038858          408 HLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLL  487 (740)
Q Consensus       408 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~  487 (740)
                      +.+.|.+.......=...+.|+.|++.+|.+++..-..+.+.++|+.|++++                            
T Consensus       341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy----------------------------  392 (1081)
T KOG0618|consen  341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY----------------------------  392 (1081)
T ss_pred             hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc----------------------------
Confidence            5555544321111111234455555555555444334444444555555554                            


Q ss_pred             cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT  567 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  567 (740)
                               |.+...+...+.+++.|+.|+||||+++. +|.+...        +..|+.|...+|.+. ..| .+..++
T Consensus       393 ---------NrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~--------~~~L~tL~ahsN~l~-~fP-e~~~l~  452 (1081)
T KOG0618|consen  393 ---------NRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVAN--------LGRLHTLRAHSNQLL-SFP-ELAQLP  452 (1081)
T ss_pred             ---------cccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHh--------hhhhHHHhhcCCcee-ech-hhhhcC
Confidence                     44443333334445555555555555542 2233332        345555555555555 455 667777


Q ss_pred             cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858          568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      +|+.+|++.|+++......-...++|++||+++|.-.......|..+.++...++.-|
T Consensus       453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            8888888888777544433333478888888888755466666777777777777666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.6e-33  Score=280.38  Aligned_cols=365  Identities=28%  Similarity=0.386  Sum_probs=189.8

Q ss_pred             CCCCEEEccCCCCcc-cCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcE
Q 038858          231 NKLEDVDLSHIKMNG-EFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSS  309 (740)
Q Consensus       231 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  309 (740)
                      +..+-.|+++|.++| .+|... ..+++++.|.+...++.. .|..++.+.+|++|.+++|++. .+...+.. +|.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence            445566666666663 345443 566666666666555543 3445555566666666666555 33333333 556666


Q ss_pred             EEccCCcCc-ccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCC
Q 038858          310 FNISMNALD-GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDN  388 (740)
Q Consensus       310 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  388 (740)
                      +.+..|++. .-+|..+-.+..|+.||||+|++. +.|..+. ...++-.|+|++|+|..++...|.+++.|-.|++++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            666665544 234444555666666666666665 5555543 4555566666666666555555555556666666666


Q ss_pred             cccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCccc-CCCCccccCCCCccEEeccCCcCCCCCC
Q 038858          389 HFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE-GPIPVAFCQLDSLQILGISDNNISGSLP  467 (740)
Q Consensus       389 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~  467 (740)
                      ++.. +|..+..+..|++|++++|++.......+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|.+.    
T Consensus       161 rLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----  235 (1255)
T KOG0444|consen  161 RLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----  235 (1255)
T ss_pred             hhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----
Confidence            5543 3334555555666666666554333333444455555555554322 234444555555555555555554    


Q ss_pred             CCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccce
Q 038858          468 SYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG  547 (740)
Q Consensus       468 ~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~  547 (740)
                                .+|+.+-.+++|+.|+|++|+++ ..........+|++|++|.|+++ ..|.++..        ++.|+.
T Consensus       236 ----------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------L~kL~k  295 (1255)
T KOG0444|consen  236 ----------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------LTKLTK  295 (1255)
T ss_pred             ----------cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh--------hHHHHH
Confidence                      45555555555555555555554 22222333344555555555554 23333322        345555


Q ss_pred             EEccCccccc-cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858          548 IDLSCNKLIG-DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN  626 (740)
Q Consensus       548 L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  626 (740)
                      |++.+|+++. -+|..++.+.+|+.+..++|.+. ..|.++..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            5555555442 23444555555555555555444 44555555555555555555554 445555555555555555554


Q ss_pred             cc
Q 038858          627 LS  628 (740)
Q Consensus       627 l~  628 (740)
                      =.
T Consensus       374 nL  375 (1255)
T KOG0444|consen  374 NL  375 (1255)
T ss_pred             Cc
Confidence            43

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.6e-32  Score=275.56  Aligned_cols=385  Identities=27%  Similarity=0.352  Sum_probs=327.4

Q ss_pred             cccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEe
Q 038858          207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD  286 (740)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  286 (740)
                      -.+..+++++....+.+|.....++.++.|.+....+. .+|+.+ +.+.+|++|.+++|++.... ..++.++.|+.++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHh
Confidence            45667775665666889999999999999999998887 788886 89999999999999987643 4678899999999


Q ss_pred             ccCCcCcc-cCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcc
Q 038858          287 VSNNNFQG-RIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN  365 (740)
Q Consensus       287 l~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  365 (740)
                      +..|++.. -+|..+|. +..|+.|+|++|+++ ..|..+..-+++-+|+||+|+|. .+|..+|.++..|-.|+|++|+
T Consensus        85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            99998764 47888988 899999999999999 68888999999999999999998 9999999999999999999999


Q ss_pred             ccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCc-ccCCCCCCCccCcceeeccCCcccCCCCc
Q 038858          366 LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS-GKIPQWLGNLTGLQYIIIPENHLEGPIPV  444 (740)
Q Consensus       366 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  444 (740)
                      +...+ .....+..|++|.+++|++....-..+..+++|++|.+++.+-+ .-+|..+..+.+|..++++.|.+. ..|+
T Consensus       162 Le~LP-PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LEMLP-PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hhhcC-HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            98654 45668899999999999987655556777888999999987653 367889999999999999999998 7889


Q ss_pred             cccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcccc
Q 038858          445 AFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH  524 (740)
Q Consensus       445 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  524 (740)
                      .+..+++|+.|++++|+++              .+........+|++|+++.|.++ ..|..++.+++|+.|...+|+++
T Consensus       240 cly~l~~LrrLNLS~N~it--------------eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKIT--------------ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             HHhhhhhhheeccCcCcee--------------eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            9999999999999999998              44444556689999999999998 88999999999999999999986


Q ss_pred             C-CCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcC
Q 038858          525 G-LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL  603 (740)
Q Consensus       525 ~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  603 (740)
                      - -+|..++.        +..|+.+..++|.+. ..|+.+..|..|+.|.|++|++- ..|++++-++.|+.||+..|+-
T Consensus       305 FeGiPSGIGK--------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  305 FEGIPSGIGK--------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             ccCCccchhh--------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            2 34555544        678999999999998 89999999999999999999988 6799999999999999999977


Q ss_pred             CccCchhhhcCCCCCEEEccC
Q 038858          604 NGKIPCQLVELNALVVFSVAY  624 (740)
Q Consensus       604 ~~~~~~~~~~l~~L~~L~l~~  624 (740)
                      .-..|.--..-.+|+.-++..
T Consensus       375 LVMPPKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  375 LVMPPKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             ccCCCCcchhhhcceeeecce
Confidence            644443323335666655554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-26  Score=222.51  Aligned_cols=100  Identities=25%  Similarity=0.310  Sum_probs=92.9

Q ss_pred             cCC-cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCc
Q 038858          558 DIP-PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT  636 (740)
Q Consensus       558 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  636 (740)
                      .-| ..|..+++|++|+|++|+++++-+.+|.+...+++|.|..|++...-...|..+..|+.|++.+|+|+...|.+|.
T Consensus       264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            444 4689999999999999999999999999999999999999999877788899999999999999999999999999


Q ss_pred             cccCCCccccCCCCCCCCCCC
Q 038858          637 QFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       637 ~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      ...++..+.+-+|||.|+|.+
T Consensus       344 ~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  344 TLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             ccceeeeeehccCcccCccch
Confidence            999999999999999999975

>PLN03210 Resistant to P

Probab=99.90  E-value=1.4e-22  Score=241.10  Aligned_cols=344  Identities=20%  Similarity=0.210  Sum_probs=234.1

Q ss_pred             hhcCCCCCEEeccCCccc------CCCCCCCCCC-CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCcc
Q 038858          252 LENNTKLESLSLVNDSLA------GPFRLPIHSH-KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSS  324 (740)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~------~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  324 (740)
                      +..+++|+.|.+..+...      ...+..+..+ ++|+.|.+.++.+. .+|..+.  +.+|++|++.+|.+. .++..
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccc
Confidence            467788888877655321      1223333333 45788888877776 6776653  567888888887776 45666


Q ss_pred             ccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCC
Q 038858          325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSL  404 (740)
Q Consensus       325 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  404 (740)
                      +..+++|+.|+++++.....+|.  +..+++|++|++++|......+..+..+++|+.|++++|...+.+|..+ .+++|
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            77778888888877654446664  2357778888888776555566667777888888888776655666544 67778


Q ss_pred             CeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhh
Q 038858          405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRID  484 (740)
Q Consensus       405 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~  484 (740)
                      ++|++++|......|..   ..+|+.|++++|.+. ..|..+ .+++|+.|++.++..... +     +.+....+..+.
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l-~-----~~~~~l~~~~~~  775 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL-W-----ERVQPLTPLMTM  775 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc-c-----ccccccchhhhh
Confidence            88888877654444432   356777888887776 344333 466777777766442210 0     011111222233


Q ss_pred             ccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCcc
Q 038858          485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG  564 (740)
Q Consensus       485 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  564 (740)
                      ..++|+.|++++|.....+|..++++++|+.|++++|...+.+|... .        +++|+.|++++|.....+|..  
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------L~sL~~L~Ls~c~~L~~~p~~--  844 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------LESLESLDLSGCSRLRTFPDI--  844 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C--------ccccCEEECCCCCcccccccc--
Confidence            45789999999988777788889999999999999886544555443 1        578999999998765555543  


Q ss_pred             CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858          565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN  626 (740)
Q Consensus       565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  626 (740)
                       .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       845 -~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 -STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             -ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence             367899999999988 567888899999999998864444677777888899999998885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=8.5e-22  Score=234.53  Aligned_cols=339  Identities=20%  Similarity=0.219  Sum_probs=221.8

Q ss_pred             hhhcCCCCCCEEEccCCCC------cccCchHhhhcC-CCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858          225 KFLHHQNKLEDVDLSHIKM------NGEFPNWLLENN-TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP  297 (740)
Q Consensus       225 ~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  297 (740)
                      ..+..+.+|+.|.+..+..      ...+|..+ ..+ ++|+.|.+.++.+... |..+ ...+|++|++.++.+. .++
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~-~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF-DYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcch-hhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-ccc
Confidence            4466777888887755432      22345544 333 4588888887766543 3333 4577888888888776 566


Q ss_pred             hhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCC
Q 038858          298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL  377 (740)
Q Consensus       298 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  377 (740)
                      ..+.. +++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+. .+++|+.|++++|......+..+ ++
T Consensus       628 ~~~~~-l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        628 DGVHS-LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             ccccc-CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            55543 77888888887654445554 67778888888888765556776654 67888888888765333333333 67


Q ss_pred             CCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCccc-------CCCCccccCCC
Q 038858          378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE-------GPIPVAFCQLD  450 (740)
Q Consensus       378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~-------~~~~~~~~~~~  450 (740)
                      ++|+.|++++|......|..   ..+|++|++++|.+. .+|..+ .+++|++|.+.++...       ...+..+..++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            78888888887665554432   356788888888776 455444 4677777777664321       11122223356


Q ss_pred             CccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCc
Q 038858          451 SLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPC  530 (740)
Q Consensus       451 ~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  530 (740)
                      +|+.|++++|...+             .+|..+.++++|+.|++++|...+.+|... ++++|+.|++++|......|..
T Consensus       779 sL~~L~Ls~n~~l~-------------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        779 SLTRLFLSDIPSLV-------------ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             cchheeCCCCCCcc-------------ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence            78888888776542             456667778888888888875444555554 5778888888887644333321


Q ss_pred             ccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858          531 FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK  602 (740)
Q Consensus       531 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  602 (740)
                                 ..+|+.|++++|.+. .+|..+..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus       845 -----------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 -----------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             -----------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                       246788888888877 567777788888888888764443566667778888888888774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-25  Score=215.96  Aligned_cols=252  Identities=24%  Similarity=0.276  Sum_probs=170.2

Q ss_pred             CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeec-ccCCCccChhhhhcCccCcE
Q 038858          280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSN-NHLTGEIPEHLAIGCVNLEI  358 (740)
Q Consensus       280 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~  358 (740)
                      +.-.+++|..|+|+ .+|...|..+++|+.|+|++|.|+.+.|++|.++++|..|.+.+ |+|+ .+|...|.++.+++.
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            56678899999998 88998888899999999999999999999999999888877776 8888 899999989999999


Q ss_pred             EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCc------------ccCCCCCCCcc
Q 038858          359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS------------GKIPQWLGNLT  426 (740)
Q Consensus       359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~------------~~~~~~l~~l~  426 (740)
                      |.+.-|++..+..+.|..++++..|.+.+|.+..+....|..+.+++.+.+..|...            ...+..+++..
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            999999988888888888999999999999887776668888888888888877631            12222333333


Q ss_pred             CcceeeccCCcccCCCC--------------------------ccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858          427 GLQYIIIPENHLEGPIP--------------------------VAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP  480 (740)
Q Consensus       427 ~L~~L~l~~n~~~~~~~--------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  480 (740)
                      ......+.+.++..+.+                          ..|..+++|++|++++|+++             +.-+
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-------------~i~~  291 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-------------RIED  291 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-------------hhhh
Confidence            22222222222221111                          23445555555555555544             2334


Q ss_pred             hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcc
Q 038858          481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNK  554 (740)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  554 (740)
                      .+|.+...+++|.|..|++..+....|.++..|+.|+|.+|+|+...|..|..        +.+|.+|++-.|.
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~--------~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT--------LFSLSTLNLLSNP  357 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc--------cceeeeeehccCc
Confidence            45555555555555555555444455555555555555555555555555544        3355555554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.2e-20  Score=205.78  Aligned_cols=154  Identities=24%  Similarity=0.309  Sum_probs=83.8

Q ss_pred             CcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEE
Q 038858          281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV  360 (740)
Q Consensus       281 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  360 (740)
                      .-..|+++++.++ .+|..+.   ++|+.|++.+|+++. +|.   .+++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            3456777777776 6666543   367777777777763 443   2466777777777776 55532    34666666


Q ss_pred             cCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC
Q 038858          361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG  440 (740)
Q Consensus       361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  440 (740)
                      +++|.+.....    .+++|+.|++++|++... |.   ..++|+.|++++|.+++ +|..   ...|+.|++++|.+++
T Consensus       269 Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchhhhhh----chhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence            66666654321    124556666666665532 21   12456666666665552 2321   1235555555555543


Q ss_pred             CCCccccCCCCccEEeccCCcCC
Q 038858          441 PIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       441 ~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                       +|.   ...+|+.|++++|+++
T Consensus       337 -LP~---lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        337 -LPT---LPSGLQELSVSDNQLA  355 (788)
T ss_pred             -ccc---cccccceEecCCCccC
Confidence             221   1134555555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=5.8e-20  Score=202.38  Aligned_cols=261  Identities=25%  Similarity=0.319  Sum_probs=116.7

Q ss_pred             CcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEcc
Q 038858          307 LSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLE  386 (740)
Q Consensus       307 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  386 (740)
                      -..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|..    .++|++|++++|+++.++.    ..++|+.|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSLPV----LPPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCcccC----cccccceeecc
Confidence            344555555554 3444332  24555555555554 34431    3455555555555543321    12445555555


Q ss_pred             CCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCC
Q 038858          387 DNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSL  466 (740)
Q Consensus       387 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  466 (740)
                      +|.+... |..   ..+|+.|++++|.++ .+|.   ..++|+.|++++|++++. |..   ..+|+.|++++|.++   
T Consensus       271 ~N~L~~L-p~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~---  335 (788)
T PRK15387        271 SNPLTHL-PAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT---  335 (788)
T ss_pred             CCchhhh-hhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCccc---
Confidence            5554322 111   134455555555554 2222   124455555555555432 211   123445555555543   


Q ss_pred             CCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccc
Q 038858          467 PSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLS  546 (740)
Q Consensus       467 ~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~  546 (740)
                                 .+|..   ..+|+.|++++|++++ +|..   .++|+.|++++|.+.. +|..           .++|+
T Consensus       336 -----------~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-----------~~~L~  385 (788)
T PRK15387        336 -----------SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----------PSGLK  385 (788)
T ss_pred             -----------ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----------ccccc
Confidence                       11210   1245555555555542 2221   2344555555555543 2211           12455


Q ss_pred             eEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858          547 GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN  626 (740)
Q Consensus       547 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  626 (740)
                      .|++++|.+++ +|..   .++|+.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.+++++|+
T Consensus       386 ~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        386 ELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             eEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            55555555552 2321   1345555555555553 2322   124455555555555 445555555555555555555


Q ss_pred             ccccCCC
Q 038858          627 LSGKIPE  633 (740)
Q Consensus       627 l~~~~~~  633 (740)
                      +++..|.
T Consensus       457 Ls~~~~~  463 (788)
T PRK15387        457 LSERTLQ  463 (788)
T ss_pred             CCchHHH
Confidence            5544433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=3.2e-18  Score=190.17  Aligned_cols=247  Identities=23%  Similarity=0.388  Sum_probs=156.3

Q ss_pred             CCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEE
Q 038858          305 PSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL  384 (740)
Q Consensus       305 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  384 (740)
                      .+...|+++++.++ .+|..+  .+.|+.|++++|+++ .+|...+   ++|++|++++|.++..+ ..+  .++|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP-~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIP-ATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCC-hhh--hccccEEE
Confidence            35678888888887 456544  257888999999888 7777654   57888888888887543 222  34688888


Q ss_pred             ccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCC
Q 038858          385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG  464 (740)
Q Consensus       385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  464 (740)
                      +++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|+++. +|..+  .++|+.|++++|.++ 
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-  317 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-  317 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-
Confidence            8888876 3444443  46788888888777 4555443  467788888887774 33333  246777777777765 


Q ss_pred             CCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccc
Q 038858          465 SLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL  544 (740)
Q Consensus       465 ~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~  544 (740)
                                   .+|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|++.. +|..+          .+.
T Consensus       318 -------------~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l----------p~~  368 (754)
T PRK15370        318 -------------ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL----------PPT  368 (754)
T ss_pred             -------------cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh----------cCC
Confidence                         222222  1467777777777764 444332  567777777777653 33333          136


Q ss_pred             cceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchh----ccCcCCCcEEECCCCcCC
Q 038858          545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILST----FTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       545 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~  604 (740)
                      |+.|++++|.++ .+|..+.  .+|+.|++++|+++. +|..    +..++.+..|++.+|+++
T Consensus       369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            777777777766 3444332  256677777777663 3332    333466667777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.1e-18  Score=191.60  Aligned_cols=204  Identities=24%  Similarity=0.353  Sum_probs=107.1

Q ss_pred             CCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEc
Q 038858          330 FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL  409 (740)
Q Consensus       330 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  409 (740)
                      +|+.|++++|+++ .+|..+.   ++|+.|++++|.+..++ ..+  ..+|+.|++++|++.. +|..+.  ++|+.|++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP-~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L  290 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELP-ERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSV  290 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCC-hhH--hCCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence            4444444444444 3343221   23444444444444221 111  1245555555555542 233222  35666666


Q ss_pred             cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccC
Q 038858          410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL  489 (740)
Q Consensus       410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L  489 (740)
                      ++|.++. +|..+.  ++|+.|++++|.++. +|..+  .++|+.|++++|.++              .+|..+.  ++|
T Consensus       291 s~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt--------------~LP~~l~--~sL  348 (754)
T PRK15370        291 YDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT--------------SLPASLP--PEL  348 (754)
T ss_pred             CCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc--------------cCChhhc--Ccc
Confidence            6666552 333222  356666666666663 23222  246677777776665              2232222  467


Q ss_pred             cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC----ccC
Q 038858          490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ----IGN  565 (740)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~  565 (740)
                      +.|++++|.++ .+|..+  .++|+.|++++|+++.. |..+.          ..|+.|++++|++. .+|..    +..
T Consensus       349 ~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~----------~sL~~LdLs~N~L~-~LP~sl~~~~~~  413 (754)
T PRK15370        349 QVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL-PENLP----------AALQIMQASRNNLV-RLPESLPHFRGE  413 (754)
T ss_pred             cEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC-CHhHH----------HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence            77777777766 344433  25677777777777643 33322          25777777777776 34443    333


Q ss_pred             CCcCcEEeCcCCcCC
Q 038858          566 LTRIQTLNLSHNNLT  580 (740)
Q Consensus       566 l~~L~~L~L~~n~l~  580 (740)
                      ++.+..|++.+|.++
T Consensus       414 ~~~l~~L~L~~Npls  428 (754)
T PRK15370        414 GPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCccEEEeeCCCcc
Confidence            467788888888876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=6e-20  Score=190.59  Aligned_cols=90  Identities=20%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             CccCCCcCcEEeCcCCcCCCccchhcc-----CcCCCcEEECCCCcCCc----cCchhhhcCCCCCEEEccCCccccc--
Q 038858          562 QIGNLTRIQTLNLSHNNLTGTILSTFT-----NLRHIESLDLYHNKLNG----KIPCQLVELNALVVFSVAYNNLSGK--  630 (740)
Q Consensus       562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~--  630 (740)
                      .+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+...+..+++|+++++++|+++..  
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            344556677777777766643232222     13677777777777752    2333455566777777777777643  


Q ss_pred             --CCCCCccc-cCCCccccCCCCC
Q 038858          631 --IPEMTTQF-ATFNESNYKGNPF  651 (740)
Q Consensus       631 --~~~~~~~~-~~l~~~~~~~Np~  651 (740)
                        .......+ ..++++++.+|||
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCCC
Confidence              23333334 5667777777776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=7.5e-19  Score=182.37  Aligned_cols=62  Identities=26%  Similarity=0.326  Sum_probs=39.6

Q ss_pred             CCcCcEEeCcCCcCCC----ccchhccCcCCCcEEECCCCcCCcc----CchhhhcC-CCCCEEEccCCcc
Q 038858          566 LTRIQTLNLSHNNLTG----TILSTFTNLRHIESLDLYHNKLNGK----IPCQLVEL-NALVVFSVAYNNL  627 (740)
Q Consensus       566 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l  627 (740)
                      .+.|+.|++++|.++.    .....+..+++|+++++++|.++..    ....+... +.|+.+++.+|++
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            3567777777777762    2234455667788888888887743    33333344 6777888777754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=6e-18  Score=144.63  Aligned_cols=161  Identities=28%  Similarity=0.508  Sum_probs=105.1

Q ss_pred             CccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc
Q 038858          424 NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV  503 (740)
Q Consensus       424 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  503 (740)
                      .+.+.+.|.+++|+++ ..|..+..+.+|+.|++++|++.              .+|..+..+++|+.|+++-|++. ..
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie--------------~lp~~issl~klr~lnvgmnrl~-~l   94 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE--------------ELPTSISSLPKLRILNVGMNRLN-IL   94 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh--------------hcChhhhhchhhhheecchhhhh-cC
Confidence            4566677777777777 45556677777778887777776              66777777888888888888776 77


Q ss_pred             cccccCCCcccEEeCCCccccC-CCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCc
Q 038858          504 PVQLCGLNQLQLLDLSDNKLHG-LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT  582 (740)
Q Consensus       504 ~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  582 (740)
                      |..|+.+|.|+.||+..|.+.. ..|+.|-.        +..|+.|++++|.+. .+|..++.+++|+.|.++.|.+. .
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgnff~--------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~  164 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFY--------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S  164 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcchhH--------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence            7788888888888888877653 23333333        345566666666665 55555666666666666666555 3


Q ss_pred             cchhccCcCCCcEEECCCCcCCccCchhh
Q 038858          583 ILSTFTNLRHIESLDLYHNKLNGKIPCQL  611 (740)
Q Consensus       583 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  611 (740)
                      .|..++.++.|++|.+.+|+++ .+|..+
T Consensus       165 lpkeig~lt~lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  165 LPKEIGDLTRLRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             CcHHHHHHHHHHHHhcccceee-ecChhh
Confidence            4555555555555555555555 444333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.2e-16  Score=136.70  Aligned_cols=164  Identities=28%  Similarity=0.491  Sum_probs=98.4

Q ss_pred             CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEE
Q 038858          376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL  455 (740)
Q Consensus       376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  455 (740)
                      .+..++.|.+++|+++.. |..+..+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            455556666666666533 334556666666666666665 45555666666666666666655 555666666666666


Q ss_pred             eccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccc
Q 038858          456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTA  535 (740)
Q Consensus       456 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  535 (740)
                      |+.+|.+..            ..+|..|..++.|+.|.+++|.+. ..|...+.++                        
T Consensus       108 dltynnl~e------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt------------------------  150 (264)
T KOG0617|consen  108 DLTYNNLNE------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT------------------------  150 (264)
T ss_pred             hcccccccc------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc------------------------
Confidence            666655541            133444444444444444444443 3444444444                        


Q ss_pred             cchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccC
Q 038858          536 LHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTN  589 (740)
Q Consensus       536 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  589 (740)
                              +|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|..+++
T Consensus       151 --------~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  151 --------NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             --------ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence                    5555555555555 66788899999999999999999 55555554

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=3.9e-14  Score=157.55  Aligned_cols=118  Identities=33%  Similarity=0.555  Sum_probs=106.1

Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  623 (740)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCccc-cCCCccccCCCCCCCCCCC-CCCC
Q 038858          624 YNNLSGKIPEMTTQF-ATFNESNYKGNPFLCGLPL-PICR  661 (740)
Q Consensus       624 ~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~-~~c~  661 (740)
                      +|+++|.+|..+... ..+..+++.+|++.|+++. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876553 4566789999999998763 3564

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=2.1e-12  Score=131.54  Aligned_cols=195  Identities=28%  Similarity=0.474  Sum_probs=138.2

Q ss_pred             CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858          401 CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP  480 (740)
Q Consensus       401 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  480 (740)
                      +.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|..+|++.|+++              .+|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS--------------~lp  137 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS--------------HLP  137 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh--------------cCC
Confidence            344456777788776 66777777777888888888777 66777778888888888888876              556


Q ss_pred             hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858          481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP  560 (740)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  560 (740)
                      ..+..++ |+.|-+++|+++ ..|..++..+.|..||.+.|.+... |..+..        +.+|+.|.+..|.+. ..|
T Consensus       138 ~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~--------l~slr~l~vrRn~l~-~lp  205 (722)
T KOG0532|consen  138 DGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGY--------LTSLRDLNVRRNHLE-DLP  205 (722)
T ss_pred             hhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhh--------HHHHHHHHHhhhhhh-hCC
Confidence            5555554 778888888887 6666777777888888888877633 333333        567777888888877 455


Q ss_pred             cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc---CCCCCEEEccCCc
Q 038858          561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE---LNALVVFSVAYNN  626 (740)
Q Consensus       561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~l~~N~  626 (740)
                      +.+..+ .|..||+|+|+++ .+|-.|.+|+.|++|-|.+|++. ..|..+..   ..-.++|+..-++
T Consensus       206 ~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  206 EELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            555544 3778888888887 67778888888888888888886 55655543   3445677776664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.6e-11  Score=121.50  Aligned_cols=164  Identities=22%  Similarity=0.243  Sum_probs=110.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccc-hHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCC
Q 038858            3 SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISL-LQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHF   81 (740)
Q Consensus         3 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l   81 (740)
                      ++++|+...|.++.+......  +....|++++.||||.|-+..-. ...+.+.+|+|+.|+++.|++........-..+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            567788888887776655211  46778889999999988665432 234555588999999998887533322223356


Q ss_pred             CCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccccc-CccccCC
Q 038858           82 KSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSL-PWCLANM  160 (740)
Q Consensus        82 ~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~l~~l  160 (740)
                      ++|+.|.|+.|  .++......+...+|.|+.|+|.+|...    .+......-++.|+.|||++|++.+.. -...+.+
T Consensus       197 ~~lK~L~l~~C--Gls~k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  197 SHLKQLVLNSC--GLSWKDVQWILLTFPSLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhheEEeccC--CCCHHHHHHHHHhCCcHHHhhhhccccc----ceecchhhhhhHHhhccccCCcccccccccccccc
Confidence            78888888888  5555555555555888888888887422    122224455678888888888876432 1456778


Q ss_pred             CCCCEEEccCCcCc
Q 038858          161 TSLRTLDVSSNQLT  174 (740)
Q Consensus       161 ~~L~~L~L~~n~l~  174 (740)
                      +.|+.|+++.+.++
T Consensus       271 ~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIA  284 (505)
T ss_pred             cchhhhhccccCcc
Confidence            88888888888765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.1e-11  Score=116.30  Aligned_cols=131  Identities=26%  Similarity=0.285  Sum_probs=82.1

Q ss_pred             ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      ..|+++++++|.++ .+.++..-.|.++.|++|+|.+.....  +        ..+++|+.||||+|.++ .+..+-..+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L--------a~L~~L~~LDLS~N~Ls-~~~Gwh~KL  351 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L--------AELPQLQLLDLSGNLLA-ECVGWHLKL  351 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h--------hhcccceEeecccchhH-hhhhhHhhh
Confidence            55667777777666 455555666777777777776653221  2        22566777777777666 333444556


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc-hhhhcCCCCCEEEccCCcccccC
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP-CQLVELNALVVFSVAYNNLSGKI  631 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~  631 (740)
                      -+.++|.|+.|.|..  ..+++++-+|..||+++|+|..... ..++++|.|+.+.+.+|++.+.+
T Consensus       352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            667777777777754  5567777777777777777754322 34566666777777777766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=5.2e-12  Score=128.72  Aligned_cols=213  Identities=29%  Similarity=0.459  Sum_probs=158.4

Q ss_pred             EEcCCccccccCCcCC-CCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCc
Q 038858          359 LVLSNNNLEGHMFSKN-FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENH  437 (740)
Q Consensus       359 L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  437 (740)
                      |.|++-+++....... ..+..-...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|+.++++.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            4455555554443333 23555566788888876 45666777778888889888887 778888888999999999999


Q ss_pred             ccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEe
Q 038858          438 LEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLD  517 (740)
Q Consensus       438 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  517 (740)
                      ++ ..|..++.++ |+.|-+++|+++              .+|+.++....|..|+.+.|.+. ..|..++++.+|+.|.
T Consensus       133 lS-~lp~~lC~lp-Lkvli~sNNkl~--------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  133 LS-HLPDGLCDLP-LKVLIVSNNKLT--------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hh-cCChhhhcCc-ceeEEEecCccc--------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence            88 6677777665 788888988887              67777778888999999999887 6777888899999999


Q ss_pred             CCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhc---cCcCCCc
Q 038858          518 LSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF---TNLRHIE  594 (740)
Q Consensus       518 L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~  594 (740)
                      +..|++....++ +..         -.|..||+|+|+++ .+|..|..++.|++|-|.+|.++. .|..+   +...--+
T Consensus       196 vrRn~l~~lp~E-l~~---------LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFK  263 (722)
T KOG0532|consen  196 VRRNHLEDLPEE-LCS---------LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFK  263 (722)
T ss_pred             HhhhhhhhCCHH-HhC---------CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeee
Confidence            999988754443 333         25888999999998 788889999999999999999885 33222   2334456


Q ss_pred             EEECCCCc
Q 038858          595 SLDLYHNK  602 (740)
Q Consensus       595 ~L~Ls~N~  602 (740)
                      +|+..-++
T Consensus       264 yL~~qA~q  271 (722)
T KOG0532|consen  264 YLSTQACQ  271 (722)
T ss_pred             eecchhcc
Confidence            67666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=9.9e-11  Score=124.98  Aligned_cols=195  Identities=33%  Similarity=0.519  Sum_probs=92.2

Q ss_pred             eEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCcc-CcceeeccCCcccCCCCccccCCCCccEEeccCC
Q 038858          382 WLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLT-GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDN  460 (740)
Q Consensus       382 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  460 (740)
                      .++...+.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555432221 2333455666666666666 3444444442 6666666666665 33334555666666666666


Q ss_pred             cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhh
Q 038858          461 NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERR  540 (740)
Q Consensus       461 ~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  540 (740)
                      ++.              .+|......+.|+.|++++|.+. .+|........|+++.+++|++. ..+..+..       
T Consensus       174 ~l~--------------~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-------  230 (394)
T COG4886         174 DLS--------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-------  230 (394)
T ss_pred             hhh--------------hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh-------
Confidence            655              33333334555555666665555 33333333334555555555321 11111111       


Q ss_pred             hccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCcc
Q 038858          541 VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGK  606 (740)
Q Consensus       541 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  606 (740)
                       +..+..+.+.+|++.. .+..+..+++++.|++++|.++....  +..+.+++.|++++|.++..
T Consensus       231 -~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         231 -LKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             -cccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence             3344444444444432 13344444445555555554443222  44444455555555544433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=1.7e-11  Score=118.04  Aligned_cols=192  Identities=23%  Similarity=0.271  Sum_probs=95.1

Q ss_pred             CCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccC-------------ccccCCCCCCEEEccCCcCc
Q 038858          108 MPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLP-------------WCLANMTSLRTLDVSSNQLT  174 (740)
Q Consensus       108 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-------------~~l~~l~~L~~L~L~~n~l~  174 (740)
                      +++|++||||+|.++.+...-..+-++++..|++|.|.+|.+.-.-.             ...++-+.|+++..++|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            66777777777766632222222235566677777777776542111             11223345555555555443


Q ss_pred             cccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCch---Hh
Q 038858          175 GSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPN---WL  251 (740)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~  251 (740)
                      +...                                          ..+...+...+.|+.+.+.+|.+....-.   .-
T Consensus       171 n~ga------------------------------------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea  208 (382)
T KOG1909|consen  171 NGGA------------------------------------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA  208 (382)
T ss_pred             cccH------------------------------------------HHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence            1100                                          01223444556666666666665422211   11


Q ss_pred             hhcCCCCCEEeccCCcccCC----CCCCCCCCCCcCEEeccCCcCcccCChhH----hhcCCCCcEEEccCCcCccc---
Q 038858          252 LENNTKLESLSLVNDSLAGP----FRLPIHSHKSLRLLDVSNNNFQGRIPAEI----GDILPSLSSFNISMNALDGS---  320 (740)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~~~~~---  320 (740)
                      +..+++|++|++.+|.++..    ....+..+++|++|++++|.+.......+    ....|+|++|.+.+|.|+..   
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            24566666666666655432    12234455666666666666554333222    22345666666666665521   


Q ss_pred             -CCccccCCCCCcEEEeecccC
Q 038858          321 -IPSSFGNMNFLQILDLSNNHL  341 (740)
Q Consensus       321 -~~~~~~~l~~L~~L~L~~n~l  341 (740)
                       +.......+.|+.|++++|.+
T Consensus       289 ~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  289 ALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhcchhhHHhcCCcccc
Confidence             112233345555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=5.7e-12  Score=121.20  Aligned_cols=93  Identities=17%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             CCCCCCEEecCCCccccCccchHHH---hccCCCCcEEEccCcccccCCCCC---------CccccCCCCCCCEEEccCC
Q 038858           80 HFKSLEYLDMNTACIALNASFLQII---GASMPFLKYLSLSYFTFGTNSSRI---------LDQGLCPLVHLQELHMANN  147 (740)
Q Consensus        80 ~l~~L~~L~L~~~~i~~~~~~~~~l---~~~l~~L~~L~Ls~~~~~~~~~~~---------~~~~l~~l~~L~~L~L~~n  147 (740)
                      .+++|++||||.|  .+....++.+   -+++..|+.|.|.+|.++...+..         .......-+.|+++....|
T Consensus        90 ~~~~L~~ldLSDN--A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   90 GCPKLQKLDLSDN--AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             cCCceeEeecccc--ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            3445555555555  3333322221   122555555555555554222222         1112333456667766666


Q ss_pred             ccccc----cCccccCCCCCCEEEccCCcCc
Q 038858          148 DLRGS----LPWCLANMTSLRTLDVSSNQLT  174 (740)
Q Consensus       148 ~i~~~----~~~~l~~l~~L~~L~L~~n~l~  174 (740)
                      ++...    +...|...+.|+.+.+.+|.|.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~  198 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIR  198 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEeccccc
Confidence            66432    2234555566677766666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=3e-11  Score=113.36  Aligned_cols=201  Identities=25%  Similarity=0.246  Sum_probs=128.7

Q ss_pred             CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccC-CcccCCCCccccCCCCccE
Q 038858          376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE-NHLEGPIPVAFCQLDSLQI  454 (740)
Q Consensus       376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~  454 (740)
                      .+.+|+.+.++.|.-..+..- ...-+.|+++.+.+..+.. .| .+-....+.....+. .-..|.....+..++.|++
T Consensus       212 ~f~~l~~~~~s~~~~~~i~~~-~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  212 AFRNLKTLKFSALSTENIVDI-ELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             Hhhhhheeeeeccchhheece-eecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            345666666666643322211 1223566677666654432 11 111112222111111 1112223334455678888


Q ss_pred             EeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCccccc
Q 038858          455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNT  534 (740)
Q Consensus       455 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  534 (740)
                      +|+++|.|+              .+.+...-.+.++.|++++|.+....  .+..+++|+.||||+|.++.... +    
T Consensus       289 lDLS~N~I~--------------~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~G-w----  347 (490)
T KOG1259|consen  289 LDLSGNLIT--------------QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVG-W----  347 (490)
T ss_pred             ccccccchh--------------hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhh-h----
Confidence            999998887              55666777788999999999887433  37788899999999998764321 1    


Q ss_pred             ccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCcc
Q 038858          535 ALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGK  606 (740)
Q Consensus       535 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~  606 (740)
                          ...+.+++.|.|++|.+...  ..+..+-+|..||+++|+|.... ...++++|.|+.+.|.+|++.+.
T Consensus       348 ----h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  348 ----HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ----HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence                12256889999999988643  35667788999999999998643 36789999999999999999843

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1.1e-10  Score=105.82  Aligned_cols=142  Identities=21%  Similarity=0.327  Sum_probs=52.9

Q ss_pred             CCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCC
Q 038858           12 LMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNT   91 (740)
Q Consensus        12 Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~   91 (740)
                      |..+.|...     ..+.+..++++|+|++|.+...  +.+...+.+|+.|++++|.++.. .  .+..+++|++|++++
T Consensus         4 lt~~~i~~~-----~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~--~l~~L~~L~~L~L~~   73 (175)
T PF14580_consen    4 LTANMIEQI-----AQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E--GLPGLPRLKTLDLSN   73 (175)
T ss_dssp             ---------------------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--S
T ss_pred             ccccccccc-----cccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c--CccChhhhhhcccCC
Confidence            344444444     4567778899999999998764  44553378999999999999843 2  488899999999999


Q ss_pred             CccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccccc---CccccCCCCCCEEEc
Q 038858           92 ACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSL---PWCLANMTSLRTLDV  168 (740)
Q Consensus        92 ~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~---~~~l~~l~~L~~L~L  168 (740)
                      |+|.   .+...+...+++|++|++++|++.+ ...+  ..++.+++|++|++.+|.+....   ...+..+|+|+.||-
T Consensus        74 N~I~---~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   74 NRIS---SISEGLDKNLPNLQELYLSNNKISD-LNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             S------S-CHHHHHH-TT--EEE-TTS---S-CCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCCC---ccccchHHhCCcCCEEECcCCcCCC-hHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9663   2333343339999999999999972 2222  36788999999999999987432   134678999999985


Q ss_pred             c
Q 038858          169 S  169 (740)
Q Consensus       169 ~  169 (740)
                      .
T Consensus       148 ~  148 (175)
T PF14580_consen  148 Q  148 (175)
T ss_dssp             E
T ss_pred             E
Confidence            4

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.2e-11  Score=120.49  Aligned_cols=186  Identities=23%  Similarity=0.271  Sum_probs=113.1

Q ss_pred             CCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc--cCccccCCCCCCEEEccCCcCccccCCCchhhc
Q 038858          108 MPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS--LPWCLANMTSLRTLDVSSNQLTGSISSSPLILD  185 (740)
Q Consensus       108 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  185 (740)
                      +.+|+...|.++.+..   .-.......|++++.|||+.|-+..-  +......+|+|+.|+++.|.+......      
T Consensus       120 ~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------  190 (505)
T KOG3207|consen  120 LKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------  190 (505)
T ss_pred             HHhhhheeecCccccc---cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc------
Confidence            6677888887776651   11112566788888888888876532  122345688888888888887522111      


Q ss_pred             ccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccC
Q 038858          186 AYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVN  265 (740)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  265 (740)
                                            ....                 .++.|+.|.++.|.++-.--.++...+|+|+.|.+..
T Consensus       191 ----------------------~~~~-----------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~  231 (505)
T KOG3207|consen  191 ----------------------NTTL-----------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA  231 (505)
T ss_pred             ----------------------cchh-----------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc
Confidence                                  1111                 3457888888888887555555566778888888888


Q ss_pred             CcccCCCCCCCCCCCCcCEEeccCCcCcccCCh-hHhhcCCCCcEEEccCCcCcccC-Ccc-----ccCCCCCcEEEeec
Q 038858          266 DSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPA-EIGDILPSLSSFNISMNALDGSI-PSS-----FGNMNFLQILDLSN  338 (740)
Q Consensus       266 ~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~-~~~-----~~~l~~L~~L~L~~  338 (740)
                      |............+..|++|||++|.+. ..+. .....+|.|+.|+++.+.+.+.. |+.     ...+++|+.|++..
T Consensus       232 N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  232 NEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             ccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence            7533333334445677788888887766 3331 12223677777777777766422 221     23445566666666


Q ss_pred             ccCC
Q 038858          339 NHLT  342 (740)
Q Consensus       339 n~l~  342 (740)
                      |++.
T Consensus       311 N~I~  314 (505)
T KOG3207|consen  311 NNIR  314 (505)
T ss_pred             Cccc
Confidence            6554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=2.6e-10  Score=121.70  Aligned_cols=135  Identities=34%  Similarity=0.495  Sum_probs=57.0

Q ss_pred             hhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc
Q 038858          482 RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP  561 (740)
Q Consensus       482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  561 (740)
                      .+..+++|+.|++++|++. ..+...+..+.|+.|++++|++....+.. ..        +..|+++.+++|.+. ..+.
T Consensus       158 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~--------~~~L~~l~~~~N~~~-~~~~  226 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-EL--------LSALEELDLSNNSII-ELLS  226 (394)
T ss_pred             hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-hh--------hhhhhhhhhcCCcce-ecch
Confidence            3444444555555555444 22222223444445555555444222210 00        123444445444322 2233


Q ss_pred             CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      .+..+..+..+.+.+|++.. .+..+..+++++.|++++|.++...+  +..+.+++.|++++|.++..
T Consensus       227 ~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         227 SLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            34444444444444444442 13344444445555555554442222  44444455555555444433

>PLN03150 hypothetical protein; Provisional

Probab=98.96  E-value=1.4e-09  Score=121.32  Aligned_cols=113  Identities=32%  Similarity=0.513  Sum_probs=97.6

Q ss_pred             cccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcC
Q 038858          512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR  591 (740)
Q Consensus       512 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  591 (740)
                      .++.|+|++|.+.+.+|..+..        +++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+.+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~--------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK--------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC--------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            4678888888888888877766        67889999999999888998899999999999999999999999999999


Q ss_pred             CCcEEECCCCcCCccCchhhhcC-CCCCEEEccCCcccccCC
Q 038858          592 HIESLDLYHNKLNGKIPCQLVEL-NALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       592 ~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~  632 (740)
                      +|+.|+|++|++++.+|..+... .++..+++++|+..+..|
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999999999999988764 467889999997665444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=2.1e-09  Score=97.58  Aligned_cols=130  Identities=22%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCccccC-CCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCC-CC
Q 038858            3 SFSSLNTLCLMDNNLTEIVTTTTQELH-NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGF-PH   80 (740)
Q Consensus         3 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l-~~   80 (740)
                      +...+++|+|.+|.|+.+     +.++ .+.+|+.|++++|.+...  +.+.. +++|+.|++++|++++. .. .+ ..
T Consensus        17 n~~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~-L~~L~~L~L~~N~I~~i-~~-~l~~~   86 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKL--EGLPG-LPRLKTLDLSNNRISSI-SE-GLDKN   86 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S--CH-HHHHH
T ss_pred             cccccccccccccccccc-----cchhhhhcCCCEEECCCCCCccc--cCccC-hhhhhhcccCCCCCCcc-cc-chHHh
Confidence            455689999999999998     6677 589999999999998864  46666 89999999999999843 22 23 36


Q ss_pred             CCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEcc
Q 038858           81 FKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMA  145 (740)
Q Consensus        81 l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~  145 (740)
                      +++|++|++++|+|.--.+ ...+.. +++|++|++.+|++......-.. .+..+|+|+.||-.
T Consensus        87 lp~L~~L~L~~N~I~~l~~-l~~L~~-l~~L~~L~L~~NPv~~~~~YR~~-vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNE-LEPLSS-LPKLRVLSLEGNPVCEKKNYRLF-VIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TT--EEE-TTS---SCCC-CGGGGG--TT--EEE-TT-GGGGSTTHHHH-HHHH-TT-SEETTE
T ss_pred             CCcCCEEECcCCcCCChHH-hHHHHc-CCCcceeeccCCcccchhhHHHH-HHHHcChhheeCCE
Confidence            8999999999997754333 356666 99999999999998732211111 46789999999854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=1e-10  Score=124.83  Aligned_cols=267  Identities=26%  Similarity=0.250  Sum_probs=166.0

Q ss_pred             CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEE
Q 038858          329 NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLH  408 (740)
Q Consensus       329 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  408 (740)
                      +.++.++...+.+. ..... ...+..++.+.+..|.+.. ....+..+++|+.|++.+|.+..... .+..+++|++|+
T Consensus        49 ~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~  124 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLD  124 (414)
T ss_pred             chhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchhee
Confidence            34455555555443 22111 1246677777788887765 22335567888888888888865532 156778888888


Q ss_pred             ccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh-hhccc
Q 038858          409 LNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR-IDGLL  487 (740)
Q Consensus       409 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~-~~~l~  487 (740)
                      +++|.|+..  ..+..++.|+.|++++|.++..  ..+..++.|+.+++++|++..              +... ...+.
T Consensus       125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~--------------ie~~~~~~~~  186 (414)
T KOG0531|consen  125 LSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD--------------IENDELSELI  186 (414)
T ss_pred             ccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhh--------------hhhhhhhhcc
Confidence            888888643  2355667788888888888744  345557788888888887762              1111 35667


Q ss_pred             cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc--ccceEEccCccccccCCcCccC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS--LLSGIDLSCNKLIGDIPPQIGN  565 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~  565 (740)
                      +++.+.+.+|.+...  ..+..+..+..+++.+|.++...+...          +.  .|+.+++++|++. ..+..+..
T Consensus       187 ~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~----------~~~~~L~~l~l~~n~i~-~~~~~~~~  253 (414)
T KOG0531|consen  187 SLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNE----------LVMLHLRELYLSGNRIS-RSPEGLEN  253 (414)
T ss_pred             chHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCccc----------chhHHHHHHhcccCccc-cccccccc
Confidence            777888888877522  233334455555777777664332111          11  2777888888776 33345666


Q ss_pred             CCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCcc---Cchh-hhcCCCCCEEEccCCcccccCC
Q 038858          566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGK---IPCQ-LVELNALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       566 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-~~~l~~L~~L~l~~N~l~~~~~  632 (740)
                      +..+..|++.+|++..  ...+...+.+..+....|++...   .... ....+.++...+.+|+.....+
T Consensus       254 ~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  254 LKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            7777788888777764  34455666677777777776521   1111 3455677777777777766544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=3.6e-10  Score=120.59  Aligned_cols=267  Identities=24%  Similarity=0.209  Sum_probs=168.5

Q ss_pred             CCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEE
Q 038858          305 PSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL  384 (740)
Q Consensus       305 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  384 (740)
                      +..+.++...+.+....-. ...+..++.+.+..|.+. .+...+ ..+.+|+.+++.+|.|..+.. .+..+++|++|+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~-~~~~~l-~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~  124 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIA-KILNHL-SKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLD  124 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhh-hhhccc-ccccceeeeeccccchhhccc-chhhhhcchhee
Confidence            3455555555543321111 145566677777777776 322222 257788888888888876432 155688888888


Q ss_pred             ccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCC-ccccCCCCccEEeccCCcCC
Q 038858          385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP-VAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~  463 (740)
                      +++|.|....  .+..++.|+.|++++|.+...  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus       125 ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  125 LSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             cccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            8888887663  356677788888888888632  345567888888888888875533 2 466778888888888775


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCC--cccEEeCCCccccCCCCCcccccccchhhh
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN--QLQLLDLSDNKLHGLIPPCFDNTALHERRV  541 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  541 (740)
                                     ...++..+..+..+++..|.++...+  +..+.  .|+.+++++|++.... ..        +..
T Consensus       200 ---------------~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~--------~~~  253 (414)
T KOG0531|consen  200 ---------------EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EG--------LEN  253 (414)
T ss_pred             ---------------cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-cc--------ccc
Confidence                           22334445555556777777763322  12222  3788888888876331 11        222


Q ss_pred             ccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCc---cch-hccCcCCCcEEECCCCcCCccCc
Q 038858          542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT---ILS-TFTNLRHIESLDLYHNKLNGKIP  608 (740)
Q Consensus       542 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~-~~~~l~~L~~L~Ls~N~l~~~~~  608 (740)
                      +..+..+++.+|++...  ..+...+.+..+..+.|.+...   ... .....+.++...+.+|++....+
T Consensus       254 ~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  254 LKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            56788888888887643  2345556677777777776521   111 14556778888888888775544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.7e-09  Score=80.40  Aligned_cols=59  Identities=42%  Similarity=0.558  Sum_probs=32.4

Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK  602 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  602 (740)
                      +|+.|++++|++....+..|..+++|++|++++|+++...+++|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555555555555555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.4e-09  Score=80.82  Aligned_cols=61  Identities=34%  Similarity=0.512  Sum_probs=55.6

Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL  627 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  627 (740)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999988888999999999999999999988888999999999999999975

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.72  E-value=1.3e-08  Score=116.06  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=19.0

Q ss_pred             CCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       566 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      .++|+.|.+..+.....+......+..++.+-+..+.+.
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             cCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            355555555555554444444444444444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=7.5e-10  Score=104.19  Aligned_cols=183  Identities=19%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCccc-ccCCCCCCccccCCC
Q 038858           58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF-GTNSSRILDQGLCPL  136 (740)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~-~~~~~~~~~~~l~~l  136 (740)
                      .|++|||++..++.......++++++|+.|.++++  .+.+.+...+++ -..|+.|+++.|.- +.+...+   -++++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~l---l~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQL---LLSSC  259 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhc-cccceeeccccccccchhHHHH---HHHhh
Confidence            46666666665542211223456666666666666  455666666666 66666666666532 1000000   24566


Q ss_pred             CCCCEEEccCCccccccCc-cccC-CCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEcc
Q 038858          137 VHLQELHMANNDLRGSLPW-CLAN-MTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLS  214 (740)
Q Consensus       137 ~~L~~L~L~~n~i~~~~~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  214 (740)
                      +.|..|++++|........ .+.. -++|+.|+++++.-.  +..                .........+++|.+|+++
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~----------------sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQK----------------SHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhh----------------hHHHHHHHhCCceeeeccc
Confidence            6677777777665432211 1111 245666666665321  000                0001122445577777777


Q ss_pred             CCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHh--hhcCCCCCEEeccCC
Q 038858          215 SGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL--LENNTKLESLSLVND  266 (740)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~  266 (740)
                      .+..+.......+.+++.|+.|.++.|..  ..|..+  +...|.|.+|++.++
T Consensus       322 D~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  322 DSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66666666667777788888888888763  334432  245677888877765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=3.3e-08  Score=112.80  Aligned_cols=202  Identities=23%  Similarity=0.264  Sum_probs=120.5

Q ss_pred             cCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCc--CcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCC
Q 038858          254 NNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNN--FQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFL  331 (740)
Q Consensus       254 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L  331 (740)
                      .....+...+-++.+.....  -..+++|++|-+.+|.  +. .++..++..+|.|++||+++|.--+.+|..++.+-+|
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             chhheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            34556666666666543222  1234578888888875  44 6777777778888888888877666788888888888


Q ss_pred             cEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccc--ccCccccccCCCCCeEEc
Q 038858          332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV--EEIPQSLSKCLSLEGLHL  409 (740)
Q Consensus       332 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l  409 (740)
                      ++|+++++.+. .+|..+. .+..|.+|++..+......+.....+++|++|.+......  ...-..+..+..|+.+..
T Consensus       598 ryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            88888888887 7887775 6788888888877654444455555788888877655411  111122344444555444


Q ss_pred             cCCcCcccCCCCCCCccCcc----eeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858          410 NNNNLSGKIPQWLGNLTGLQ----YIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       410 ~~n~i~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      .....  .+...+...+.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus       676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence            33322  0011112222222    2222222222 33345566677777777776664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.7e-09  Score=100.53  Aligned_cols=229  Identities=21%  Similarity=0.169  Sum_probs=148.8

Q ss_pred             cEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCC-CCCCEEecCCCccccCccchHHHhccCCCCcE
Q 038858           35 EYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHF-KSLEYLDMNTACIALNASFLQIIGASMPFLKY  113 (740)
Q Consensus        35 ~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~  113 (740)
                      +.+|+.+-.+.......+..  +....+.+.+..+....-.+.+.-+ +.|++|||++..  ++......+-..|.+|+.
T Consensus       139 ~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~--it~stl~~iLs~C~kLk~  214 (419)
T KOG2120|consen  139 QTLDLTGRNIHPDVLGRLLS--RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSV--ITVSTLHGILSQCSKLKN  214 (419)
T ss_pred             eeeccCCCccChhHHHHHHh--CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhh--eeHHHHHHHHHHHHhhhh
Confidence            56777776666554444443  4566777765544322111112222 469999999984  445555555555999999


Q ss_pred             EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc--cCccccCCCCCCEEEccCCcCccccCCCchhhccccccc
Q 038858          114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS--LPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEI  191 (740)
Q Consensus       114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  191 (740)
                      |.+.++++.   ..+.. .+..-.+|+.|+++++.--+.  ....+.+++.|+.|++++|.+........          
T Consensus       215 lSlEg~~Ld---D~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~----------  280 (419)
T KOG2120|consen  215 LSLEGLRLD---DPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA----------  280 (419)
T ss_pred             ccccccccC---cHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH----------
Confidence            999999887   44444 778889999999999864322  22346789999999999998764332110          


Q ss_pred             chhcccccCCCCCCccccEEEccCCCCCC--CCCchhhcCCCCCCEEEccCCCC-cccCchHhhhcCCCCCEEeccCCcc
Q 038858          192 NAEITESHSLTAPNFQLKSLSLSSGYEDG--VTFPKFLHHQNKLEDVDLSHIKM-NGEFPNWLLENNTKLESLSLVNDSL  268 (740)
Q Consensus       192 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~  268 (740)
                               ...-.++|+.|++++.-..-  ..+......+++|..||+++|.. +...... +-+++.|++|.++.|..
T Consensus       281 ---------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  281 ---------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYD  350 (419)
T ss_pred             ---------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcC
Confidence                     00112278888885432211  22333445789999999999764 3333333 46889999999999853


Q ss_pred             c-CCCCCCCCCCCCcCEEeccCCc
Q 038858          269 A-GPFRLPIHSHKSLRLLDVSNNN  291 (740)
Q Consensus       269 ~-~~~~~~l~~~~~L~~L~l~~n~  291 (740)
                      - ......+...|+|.+|++.++-
T Consensus       351 i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  351 IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             CChHHeeeeccCcceEEEEecccc
Confidence            2 2223356788999999998863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=1.9e-09  Score=113.32  Aligned_cols=125  Identities=33%  Similarity=0.367  Sum_probs=64.5

Q ss_pred             cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc-CccCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP-QIGNL  566 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l  566 (740)
                      .|.+.+.+.|.+. .....+.-++.++.|+|++|++...          ..++.++.|+.|||++|.+. .+|. ...++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v----------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc  232 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV----------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC  232 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh----------HHHHhcccccccccccchhc-cccccchhhh
Confidence            4555666666665 4444555566666666666665422          23444556666666666665 2221 22233


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc-hhhhcCCCCCEEEccCCcc
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP-CQLVELNALVVFSVAYNNL  627 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l  627 (740)
                      . |+.|+|++|.++.  ..++.++.+|+.||+++|-|.+.-. .-+..+..|+.|+|.+|++
T Consensus       233 ~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             h-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            3 6666666666554  4455556666666666665542211 1123334444444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=1.3e-09  Score=114.41  Aligned_cols=179  Identities=29%  Similarity=0.263  Sum_probs=121.2

Q ss_pred             ccccccCCCCCeEEccCCcCcccCCCCCCCc-cCcceeeccCCccc----------CCCCccccCCCCccEEeccCCcCC
Q 038858          395 PQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL-TGLQYIIIPENHLE----------GPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       395 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~----------~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      |-.+..+.+|++|.+.+|.+..  ...+..+ ..|++|.-. |.+.          +.+..++ .+..|...+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            4456677788888888888753  2222222 234444322 2111          1111111 1345667777777776


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS  543 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~  543 (740)
                                    .....+.-++.|+.|+|+.|+++...  .+..++.|++|||+.|.+....--...+         -
T Consensus       178 --------------~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~g---------c  232 (1096)
T KOG1859|consen  178 --------------LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVG---------C  232 (1096)
T ss_pred             --------------hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhh---------h
Confidence                          56677888899999999999998544  7889999999999999987433211111         2


Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCC
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      .|+.|.+++|.++..  ..+.++.+|+.||+++|-+.+.. ...+..+..|+.|+|.+|++-
T Consensus       233 ~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  233 KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            489999999999854  35678899999999999887522 234556788899999999985

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.54  E-value=3e-09  Score=105.05  Aligned_cols=307  Identities=18%  Similarity=0.119  Sum_probs=174.6

Q ss_pred             CCCcEEECCCCC-CcccchHHHHhcCCCCCEEEcCCCCCCCcCCC-CCCCCCCCCCEEecCCCccccCccchHHHhccCC
Q 038858           32 TNLEYLTLDFSS-LHISLLQSIASIFPSLKSLSMIDCKVNGVVRS-QGFPHFKSLEYLDMNTACIALNASFLQIIGASMP  109 (740)
Q Consensus        32 ~~L~~L~Ls~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~  109 (740)
                      ..|+.|.+.++. +.+.....+...++++++|++.+|........ ..-..+++|++|++..|. .+++...+.++++|+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHHHHHHhhh
Confidence            357777777774 33333444544577788887777763322111 111356778888887753 445566666777788


Q ss_pred             CCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc--cCccccCCCCCCEEEccCCc-CccccCCCchhhcc
Q 038858          110 FLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS--LPWCLANMTSLRTLDVSSNQ-LTGSISSSPLILDA  186 (740)
Q Consensus       110 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~  186 (740)
                      +|++|+++.|.-....+ +.. ...++..++.+.+.+|.-.+.  +...=+.+..+..+++..|. +++.-         
T Consensus       217 kL~~lNlSwc~qi~~~g-v~~-~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~---------  285 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNG-VQA-LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED---------  285 (483)
T ss_pred             hHHHhhhccCchhhcCc-chH-HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH---------
Confidence            88888888775331111 111 345666677776666532211  00111233445556655553 22110         


Q ss_pred             cccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhh-cCCCCCCEEEccCCC-CcccCchHhhhcCCCCCEEecc
Q 038858          187 YNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFL-HHQNKLEDVDLSHIK-MNGEFPNWLLENNTKLESLSLV  264 (740)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~  264 (740)
                                 .......+..|+.|..++....++.....+ .+..+|+.+.++.|+ +++.....+..+++.|+.+++.
T Consensus       286 -----------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  286 -----------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE  354 (483)
T ss_pred             -----------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence                       011112334677777755555444433333 366888999988887 4444445555678889999888


Q ss_pred             CCcccCC--CCCCCCCCCCcCEEeccCCcCc-ccCC---hhHhhcCCCCcEEEccCCcCc-ccCCccccCCCCCcEEEee
Q 038858          265 NDSLAGP--FRLPIHSHKSLRLLDVSNNNFQ-GRIP---AEIGDILPSLSSFNISMNALD-GSIPSSFGNMNFLQILDLS  337 (740)
Q Consensus       265 ~~~~~~~--~~~~l~~~~~L~~L~l~~n~l~-~~~~---~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~  337 (740)
                      .+.....  ....-.+++.|+++.++.+... +..-   .........++.+.+++++.+ +..-+.+..+++|+.+++.
T Consensus       355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence            8754321  2223346788999999877532 2100   111123567899999998754 4445567788999999998


Q ss_pred             cccCCCccC-hhhhhcCccCcEEEc
Q 038858          338 NNHLTGEIP-EHLAIGCVNLEILVL  361 (740)
Q Consensus       338 ~n~l~~~~~-~~~~~~l~~L~~L~L  361 (740)
                      +++-...-+ ..+...+|++++..+
T Consensus       435 ~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  435 DCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             chhhhhhhhhHHHHhhCccceehhh
Confidence            886432222 223345666655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.50  E-value=4.4e-09  Score=103.94  Aligned_cols=307  Identities=17%  Similarity=0.059  Sum_probs=193.8

Q ss_pred             CCCCEEEcCCCCCCCcCCCC-CCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCC
Q 038858           57 PSLKSLSMIDCKVNGVVRSQ-GFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCP  135 (740)
Q Consensus        57 ~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~  135 (740)
                      ..|+.|.+.+++-.+.-+.. ...+++++++|.+.++. .+++.....+++.|++|++|++..|...+  ......-...
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEG  214 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHh
Confidence            36999999999866443322 23578999999999997 67788888888889999999999864321  1111112357


Q ss_pred             CCCCCEEEccCCc-cccc-cCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEc
Q 038858          136 LVHLQELHMANND-LRGS-LPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSL  213 (740)
Q Consensus       136 l~~L~~L~L~~n~-i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  213 (740)
                      +++|+++++++|. |++. +......+..++.+.+++|.=.   +.                +.+......+..+.++++
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---~l----------------e~l~~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---EL----------------EALLKAAAYCLEILKLNL  275 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---cH----------------HHHHHHhccChHhhccch
Confidence            8999999999985 3332 1223445666777777765311   10                000111122234566665


Q ss_pred             cCCCCCCCCC-chhhcCCCCCCEEEccCCCCc-ccCchHhhhcCCCCCEEeccCCcc-cCCCCCCC-CCCCCcCEEeccC
Q 038858          214 SSGYEDGVTF-PKFLHHQNKLEDVDLSHIKMN-GEFPNWLLENNTKLESLSLVNDSL-AGPFRLPI-HSHKSLRLLDVSN  289 (740)
Q Consensus       214 ~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~  289 (740)
                      .....+++.. ...-..+..|+.++.+++... +.....+..++++|+.|.++.++- ++.....+ .+.+.|+.+++.+
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence            4555555433 223335688999999987643 333444567789999999999863 33222223 3578999999998


Q ss_pred             CcCcccC-ChhHhhcCCCCcEEEccCCcCc-cc----CCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCC
Q 038858          290 NNFQGRI-PAEIGDILPSLSSFNISMNALD-GS----IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN  363 (740)
Q Consensus       290 n~l~~~~-~~~~~~~~~~L~~L~l~~n~~~-~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  363 (740)
                      +...... -......++.|+.+.+++|... +.    ....-.++..|..+.+++++...+-.......+++|+.+++..
T Consensus       356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            7643111 2334456899999999988643 22    1222356788999999999865343334445788999999988


Q ss_pred             ccc-cccCCc-CCCCCCCCCeEEc
Q 038858          364 NNL-EGHMFS-KNFNLTKLSWLLL  385 (740)
Q Consensus       364 n~l-~~~~~~-~~~~l~~L~~L~l  385 (740)
                      ++- +..... .-.++|++++.-+
T Consensus       436 ~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  436 CQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhhhhhhhhHHHHhhCccceehhh
Confidence            762 222222 2235777766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=7e-08  Score=91.17  Aligned_cols=111  Identities=21%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             CCEEEcCCCCCCCcCCCCCC-CCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858           59 LKSLSMIDCKVNGVVRSQGF-PHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV  137 (740)
Q Consensus        59 L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~  137 (740)
                      ++.|.+.++.+...-....| ...+.++.|||.+|.|. ..+-...+.+++|+|++|+++.|++....+++|    ..+.
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~  121 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLK  121 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCc----cccc
Confidence            44555556655422111112 24578888888888653 122233444559999999999998874444443    3567


Q ss_pred             CCCEEEccCCcccc-ccCccccCCCCCCEEEccCCcCc
Q 038858          138 HLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLT  174 (740)
Q Consensus       138 ~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~  174 (740)
                      +|++|.|.++.+.- .....+..+|.++.|.++.|.+.
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            89999998887642 22345667888899988888543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=2.1e-07  Score=88.08  Aligned_cols=85  Identities=19%  Similarity=0.165  Sum_probs=37.5

Q ss_pred             CCCCcEEECCCCCCccc-chHHHHhcCCCCCEEEcCCCCCCCcCCCCCC-CCCCCCCEEecCCCccccCccchHHHhccC
Q 038858           31 FTNLEYLTLDFSSLHIS-LLQSIASIFPSLKSLSMIDCKVNGVVRSQGF-PHFKSLEYLDMNTACIALNASFLQIIGASM  108 (740)
Q Consensus        31 l~~L~~L~Ls~~~~~~~-~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l  108 (740)
                      +++++++||.+|.+++= ....+.+++|.|+.|+++.|++...+..  + ..+++|++|-|.+..  +...........+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~--L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTG--LSWTQSTSSLDDL  145 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCC--CChhhhhhhhhcc
Confidence            45555555555554431 1122323355555555555555433321  2 234555555555552  2222222222225


Q ss_pred             CCCcEEEccCc
Q 038858          109 PFLKYLSLSYF  119 (740)
Q Consensus       109 ~~L~~L~Ls~~  119 (740)
                      |.++.|.++.|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            55555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=7.6e-08  Score=89.70  Aligned_cols=64  Identities=20%  Similarity=0.144  Sum_probs=34.5

Q ss_pred             CCCCcEEEccCCcCccc----CCccccCCCCCcEEEeecccCCCccChhhhh-----cCccCcEEEcCCcccc
Q 038858          304 LPSLSSFNISMNALDGS----IPSSFGNMNFLQILDLSNNHLTGEIPEHLAI-----GCVNLEILVLSNNNLE  367 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~l~~L~~L~L~~n~l~  367 (740)
                      +.+|+.|++.+|-++..    ...++...+.|++|.+.+|-++......++.     ..|+|..|...+|.+.
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            45666666666665521    2233444556777777777666444443332     2345555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.22  E-value=1.3e-07  Score=88.11  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=42.0

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCc-cccCCCCCCcEEECCCCC---Ccccch-------HHHHhcCCCCCEEEcCCCCCCCc
Q 038858            4 FSSLNTLCLMDNNLTEIVTTTT-QELHNFTNLEYLTLDFSS---LHISLL-------QSIASIFPSLKSLSMIDCKVNGV   72 (740)
Q Consensus         4 l~~L~~L~Ls~n~i~~~~~~~~-~~l~~l~~L~~L~Ls~~~---~~~~~~-------~~l~~~l~~L~~L~l~~~~~~~~   72 (740)
                      +..++.++||+|.|...-..++ ..+++-++|+..+++.--   ..+..+       +.+.. |++|+..++++|.+...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcc
Confidence            3455666666666654311000 235555666666665421   111111       12223 56666666666655433


Q ss_pred             CCCC---CCCCCCCCCEEecCCC
Q 038858           73 VRSQ---GFPHFKSLEYLDMNTA   92 (740)
Q Consensus        73 ~~~~---~l~~l~~L~~L~L~~~   92 (740)
                      .|+.   .+++-+.|++|.+++|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecC
Confidence            3321   2344556666666666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=2.2e-07  Score=77.58  Aligned_cols=58  Identities=26%  Similarity=0.350  Sum_probs=27.2

Q ss_pred             cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858          568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL  627 (740)
Q Consensus       568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  627 (740)
                      ..+.|+|++|.|+ ..|..+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|.+
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            4444444444444 23333444455555555555544 3444444444555555544444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.00  E-value=3.2e-06  Score=94.22  Aligned_cols=138  Identities=25%  Similarity=0.272  Sum_probs=67.9

Q ss_pred             CCCcEEECCCCC-CcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCC
Q 038858           32 TNLEYLTLDFSS-LHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPF  110 (740)
Q Consensus        32 ~~L~~L~Ls~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~  110 (740)
                      .+|++|+++|.. +...-+..++..+|+|++|.+++-.+...--.....++++|+.||+|++.+.    -...+.. +++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~----nl~GIS~-Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS----NLSGISR-LKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc----CcHHHhc-ccc
Confidence            455666665542 2333344555555666666665544432110112345566666666665331    1244555 666


Q ss_pred             CcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc------cCccccCCCCCCEEEccCCcCcccc
Q 038858          111 LKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS------LPWCLANMTSLRTLDVSSNQLTGSI  177 (740)
Q Consensus       111 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~------~~~~l~~l~~L~~L~L~~n~l~~~~  177 (740)
                      |+.|.+.+-.+.+   .-.-..+.+|++|++||+|.......      ..+.-..+|+|+.||.|++.+...+
T Consensus       197 Lq~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  197 LQVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            6666665544431   01111345566666666665443211      1122334778888888877666433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=1.7e-06  Score=96.33  Aligned_cols=138  Identities=22%  Similarity=0.280  Sum_probs=70.7

Q ss_pred             CCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCcccc
Q 038858           80 HFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLA  158 (740)
Q Consensus        80 ~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~  158 (740)
                      .+|+|+.|.+++-  .+..+....++.++|+|..||+|+++++    .+  .+++.+++|++|.+.+-.+.. ..-..+.
T Consensus       146 ~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~TnI~----nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  146 MLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGTNIS----NL--SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             hCcccceEEecCc--eecchhHHHHhhccCccceeecCCCCcc----Cc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            3556666666554  2222223334444666666666665554    22  245556666666555554442 1122344


Q ss_pred             CCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEc
Q 038858          159 NMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDL  238 (740)
Q Consensus       159 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  238 (740)
                      ++++|+.||+|........                             .+..           ...+.-..++.|+.||.
T Consensus       218 ~L~~L~vLDIS~~~~~~~~-----------------------------~ii~-----------qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDT-----------------------------KIIE-----------QYLECGMVLPELRFLDC  257 (699)
T ss_pred             cccCCCeeeccccccccch-----------------------------HHHH-----------HHHHhcccCccccEEec
Confidence            5566666666555432100                             0000           01112224678888888


Q ss_pred             cCCCCcccCchHhhhcCCCCCEEeccC
Q 038858          239 SHIKMNGEFPNWLLENNTKLESLSLVN  265 (740)
Q Consensus       239 ~~~~~~~~~~~~~~~~l~~L~~L~l~~  265 (740)
                      ++..+.+.+-+.+...-++|+.+..-+
T Consensus       258 SgTdi~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  258 SGTDINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             CCcchhHHHHHHHHHhCccHhhhhhhh
Confidence            888887777666666666666665544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=4.7e-07  Score=75.63  Aligned_cols=103  Identities=18%  Similarity=0.279  Sum_probs=77.4

Q ss_pred             cceEEccCccccccCCcC---ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEE
Q 038858          545 LSGIDLSCNKLIGDIPPQ---IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFS  621 (740)
Q Consensus       545 L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  621 (740)
                      +..++|+.|.+. -+++.   +.....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|+.++.++.|+.++
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            455677777665 23333   344467888899999999666655566779999999999999 7788899999999999


Q ss_pred             ccCCcccccCCCCCccccCCCccccCCCC
Q 038858          622 VAYNNLSGKIPEMTTQFATFNESNYKGNP  650 (740)
Q Consensus       622 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np  650 (740)
                      ++.|++...+ +.+.++.+|..++..+|.
T Consensus       107 l~~N~l~~~p-~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  107 LRFNPLNAEP-RVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             cccCccccch-HHHHHHHhHHHhcCCCCc
Confidence            9999999654 444557777666655553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=7.2e-05  Score=76.75  Aligned_cols=54  Identities=19%  Similarity=0.211  Sum_probs=24.0

Q ss_pred             CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCC
Q 038858          377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN  436 (740)
Q Consensus       377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  436 (740)
                      +.+++.|++++|.+... | .+  ..+|++|.+++|.-...+|..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            45555566655544322 2 11  1245555555543222333322  134555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=3.9e-05  Score=69.02  Aligned_cols=106  Identities=25%  Similarity=0.268  Sum_probs=61.3

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccC-CcCCCCCCCCCe
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHM-FSKNFNLTKLSW  382 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  382 (740)
                      ..+...+++++|.+.  ..+.|..++.|..|.+++|.|+ .+...+..-+++|..|.+.+|.+.... ...+..+|+|++
T Consensus        41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            445666677776665  2233566677777777777776 555555545666777777776654322 123445666666


Q ss_pred             EEccCCcccccC---ccccccCCCCCeEEccCC
Q 038858          383 LLLEDNHFVEEI---PQSLSKCLSLEGLHLNNN  412 (740)
Q Consensus       383 L~l~~n~~~~~~---~~~~~~l~~L~~L~l~~n  412 (740)
                      |.+-+|++...-   ...+..+++|++||.++-
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            666666654331   123455666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=1.9e-05  Score=53.46  Aligned_cols=36  Identities=31%  Similarity=0.601  Sum_probs=18.9

Q ss_pred             cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      +|++|++++|+|+. ++..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            45566666666653 3334555566666666665555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=2.4e-05  Score=52.89  Aligned_cols=36  Identities=31%  Similarity=0.547  Sum_probs=20.6

Q ss_pred             CCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858          592 HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS  628 (740)
Q Consensus       592 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  628 (740)
                      +|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 34445566666666666666665

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.68  E-value=0.00011  Score=64.40  Aligned_cols=55  Identities=24%  Similarity=0.371  Sum_probs=17.4

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEc
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVL  361 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  361 (740)
                      +++|+.+.+.. .+.......|.+++.|+.+.+.++ +. .++...+.++++++.+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence            33444444432 233333334444444444444332 32 333333333434444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.65  E-value=0.00013  Score=64.04  Aligned_cols=106  Identities=21%  Similarity=0.286  Sum_probs=41.4

Q ss_pred             ccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCC
Q 038858          323 SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL  402 (740)
Q Consensus       323 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  402 (740)
                      .+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            3455556666666553 343 455555555555665555543 4444444454554555555543 22223333444455


Q ss_pred             CCCeEEccCCcCcccCCCCCCCccCcceeecc
Q 038858          403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP  434 (740)
Q Consensus       403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  434 (740)
                      +|+.+++..+ +.......|.++ .++.+.+.
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            5555555433 222333344443 44544444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=7.9e-05  Score=67.12  Aligned_cols=130  Identities=18%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             CEEeCCCCCCCCCCCCCccccCC-CCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCE
Q 038858            8 NTLCLMDNNLTEIVTTTTQELHN-FTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEY   86 (740)
Q Consensus         8 ~~L~Ls~n~i~~~~~~~~~~l~~-l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~   86 (740)
                      +.++|.+.++..+     +.++. ......+||++|++..  .+.+.. +++|..|.+.+|+|+..-| ..-..+++|+.
T Consensus        22 ~e~~LR~lkip~i-----enlg~~~d~~d~iDLtdNdl~~--l~~lp~-l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~   92 (233)
T KOG1644|consen   22 RELDLRGLKIPVI-----ENLGATLDQFDAIDLTDNDLRK--LDNLPH-LPRLHTLLLNNNRITRIDP-DLDTFLPNLKT   92 (233)
T ss_pred             cccccccccccch-----hhccccccccceecccccchhh--cccCCC-ccccceEEecCCcceeecc-chhhhccccce
Confidence            4566666666555     33443 3567788888887653  244555 7788888888888884433 32344677888


Q ss_pred             EecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcc
Q 038858           87 LDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDL  149 (740)
Q Consensus        87 L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i  149 (740)
                      |.|.+|.|.--+++ ..+.. ||+|++|.+-+|.+......-.- .+..+++|++||...-..
T Consensus        93 L~LtnNsi~~l~dl-~pLa~-~p~L~~Ltll~Npv~~k~~YR~y-vl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   93 LILTNNSIQELGDL-DPLAS-CPKLEYLTLLGNPVEHKKNYRLY-VLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             EEecCcchhhhhhc-chhcc-CCccceeeecCCchhcccCceeE-EEEecCcceEeehhhhhH
Confidence            88888876433333 33445 88999999988877633322222 477889999999877543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00015  Score=74.44  Aligned_cols=137  Identities=15%  Similarity=0.248  Sum_probs=83.3

Q ss_pred             CCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccc-cccc
Q 038858          423 GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHN-NLEG  501 (740)
Q Consensus       423 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~  501 (740)
                      ..+.+++.|++++|.++ .+|   .-..+|++|.+++|.-..             .+|+.+  .++|+.|++++| .+. 
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLt-------------sLP~~L--P~nLe~L~Ls~Cs~L~-  108 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLT-------------TLPGSI--PEGLEKLTVCHCPEIS-  108 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcc-------------cCCchh--hhhhhheEccCccccc-
Confidence            34688999999999877 445   234579999998865432             333333  257899999988 444 


Q ss_pred             cccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc--ccCCcCccCCCcCcEEeCcCCcC
Q 038858          502 EVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI--GDIPPQIGNLTRIQTLNLSHNNL  579 (740)
Q Consensus       502 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l  579 (740)
                      ..|      ++|+.|+++++.....  ..+          .++|+.|.+.++.-.  ...|..+  .++|++|++++|..
T Consensus       109 sLP------~sLe~L~L~~n~~~~L--~~L----------PssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~  168 (426)
T PRK15386        109 GLP------ESVRSLEIKGSATDSI--KNV----------PNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSN  168 (426)
T ss_pred             ccc------cccceEEeCCCCCccc--ccC----------cchHhheecccccccccccccccc--CCcccEEEecCCCc
Confidence            333      3577788876654321  111          246777777543311  0111111  15788888888876


Q ss_pred             CCccchhccCcCCCcEEECCCCc
Q 038858          580 TGTILSTFTNLRHIESLDLYHNK  602 (740)
Q Consensus       580 ~~~~~~~~~~l~~L~~L~Ls~N~  602 (740)
                      . ..|..+.  .+|+.|+++.|.
T Consensus       169 i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        169 I-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             c-cCccccc--ccCcEEEecccc
Confidence            5 3344444  578888887763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.51  E-value=6.5e-05  Score=70.78  Aligned_cols=110  Identities=23%  Similarity=0.241  Sum_probs=55.1

Q ss_pred             CCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCC--CCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhc
Q 038858           29 HNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDC--KVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGA  106 (740)
Q Consensus        29 ~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~--~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~  106 (740)
                      ..+..|+.|++.++.++.  ...+.. +++|+.|.++.|  ++.+.++.. ...+++|++|++++|+|.+ -+....+.+
T Consensus        40 d~~~~le~ls~~n~gltt--~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~-lstl~pl~~  114 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTT--LTNFPK-LPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD-LSTLRPLKE  114 (260)
T ss_pred             ccccchhhhhhhccceee--cccCCC-cchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc-ccccchhhh
Confidence            345555555555554432  123333 566777777766  333333221 3344777777777775543 222334444


Q ss_pred             cCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEcc
Q 038858          107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMA  145 (740)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~  145 (740)
                       +.+|..|++.+|..++ -...-...|.-+++|++||-.
T Consensus       115 -l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  115 -LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             -hcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence             6667777777665541 001111134455666666533

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00014  Score=68.59  Aligned_cols=109  Identities=23%  Similarity=0.265  Sum_probs=76.4

Q ss_pred             cCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccC
Q 038858           55 IFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLC  134 (740)
Q Consensus        55 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~  134 (740)
                      .+..|+.|++.++.++..   ..+..+++|+.|.++.|.......+...... +++|++|+++.|++.. ..++.  .+.
T Consensus        41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~-lstl~--pl~  113 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKD-LSTLR--PLK  113 (260)
T ss_pred             cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccc-ccccc--hhh
Confidence            367889999888887643   2488899999999999943333444333444 8999999999998872 22222  366


Q ss_pred             CCCCCCEEEccCCcccccc---CccccCCCCCCEEEccC
Q 038858          135 PLVHLQELHMANNDLRGSL---PWCLANMTSLRTLDVSS  170 (740)
Q Consensus       135 ~l~~L~~L~L~~n~i~~~~---~~~l~~l~~L~~L~L~~  170 (740)
                      .+.+|..|++.+|......   ...|.-+++|++||-..
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            7788899999999876421   12456678888886443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.07  E-value=0.00016  Score=79.74  Aligned_cols=121  Identities=27%  Similarity=0.237  Sum_probs=62.6

Q ss_pred             hHHHHhcCCCCCEEEcCCCCCCCcCC-CCCCCCCCCCCEEecCCCc--cccCccchHHHhccCCCCcEEEccCcc-cccC
Q 038858           49 LQSIASIFPSLKSLSMIDCKVNGVVR-SQGFPHFKSLEYLDMNTAC--IALNASFLQIIGASMPFLKYLSLSYFT-FGTN  124 (740)
Q Consensus        49 ~~~l~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~--i~~~~~~~~~l~~~l~~L~~L~Ls~~~-~~~~  124 (740)
                      ...+....+.|+.|.+.++.-..... ......+++|+.|+++++.  +.........+...+++|+.|+++++. ++  
T Consensus       180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is--  257 (482)
T KOG1947|consen  180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT--  257 (482)
T ss_pred             HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--
Confidence            33343335677777777664332211 1124556777777776521  111121222344447777777777766 33  


Q ss_pred             CCCCCcccc-CCCCCCCEEEccCCc-ccccc-CccccCCCCCCEEEccCCcC
Q 038858          125 SSRILDQGL-CPLVHLQELHMANND-LRGSL-PWCLANMTSLRTLDVSSNQL  173 (740)
Q Consensus       125 ~~~~~~~~l-~~l~~L~~L~L~~n~-i~~~~-~~~l~~l~~L~~L~L~~n~l  173 (740)
                       ..... .+ ..+++|++|.+.+|. +++.. ......+++|++|+++++..
T Consensus       258 -d~~l~-~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  258 -DIGLS-ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             -chhHH-HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             11111 22 226677777766666 44322 22234567778887777754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.03  E-value=0.00014  Score=80.16  Aligned_cols=163  Identities=26%  Similarity=0.227  Sum_probs=89.9

Q ss_pred             CCCCCEEeCCCCC-CCCCCCCCccccCCCCCCcEEECCCC-CC-ccc--chHHHHhcCCCCCEEEcCCCC-CCCcCCCCC
Q 038858            4 FSSLNTLCLMDNN-LTEIVTTTTQELHNFTNLEYLTLDFS-SL-HIS--LLQSIASIFPSLKSLSMIDCK-VNGVVRSQG   77 (740)
Q Consensus         4 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~l~~L~~L~Ls~~-~~-~~~--~~~~l~~~l~~L~~L~l~~~~-~~~~~~~~~   77 (740)
                      ++.|+.|.+.++. +...-  .......+++|+.|+++++ .. ...  ....+...+++|+.|+++.+. +++..- ..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~  263 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SA  263 (482)
T ss_pred             CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HH
Confidence            5677777777663 33320  0134566788888888763 21 111  112233446788888888877 442211 11


Q ss_pred             CC-CCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCc----cc--
Q 038858           78 FP-HFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANND----LR--  150 (740)
Q Consensus        78 l~-~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~----i~--  150 (740)
                      +. .+++|++|.+.++. .+++.....+...++.|++|+++.|....+. .+.. ...++++|+.|.+....    ++  
T Consensus       264 l~~~c~~L~~L~l~~c~-~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~-~l~~-~~~~c~~l~~l~~~~~~~c~~l~~~  340 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCS-NLTDEGLVSIAERCPSLRELDLSGCHGLTDS-GLEA-LLKNCPNLRELKLLSLNGCPSLTDL  340 (482)
T ss_pred             HHhhCCCcceEccCCCC-ccchhHHHHHHHhcCcccEEeeecCccchHH-HHHH-HHHhCcchhhhhhhhcCCCccHHHH
Confidence            22 36788888877663 2566666677777888888888877543111 1111 12334444444433222    11  


Q ss_pred             -----------cccCccccCCCCCCEEEccCCc
Q 038858          151 -----------GSLPWCLANMTSLRTLDVSSNQ  172 (740)
Q Consensus       151 -----------~~~~~~l~~l~~L~~L~L~~n~  172 (740)
                                 .........+++++.+.+..+.
T Consensus       341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence                       1122235667888888888776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.00011  Score=69.28  Aligned_cols=103  Identities=22%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             CCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCC
Q 038858           30 NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMP  109 (740)
Q Consensus        30 ~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~  109 (740)
                      .+.+.+.|+..+|.+.++   .++..++.|+.|.|+-|+|+...|   +..|++|++|.|..|+|...++ ...+.+ ++
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldE-L~YLkn-lp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDE-LEYLKN-LP   88 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHH-HHHHhc-Cc
Confidence            356677788888887754   334447888888888888875443   7788888888888886632221 223444 88


Q ss_pred             CCcEEEccCcccccCCCCCCc----cccCCCCCCCEEE
Q 038858          110 FLKYLSLSYFTFGTNSSRILD----QGLCPLVHLQELH  143 (740)
Q Consensus       110 ~L~~L~Ls~~~~~~~~~~~~~----~~l~~l~~L~~L~  143 (740)
                      +|+.|=|..|...   +.-+.    ..+.-|++|+.||
T Consensus        89 sLr~LWL~ENPCc---~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCC---GEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcc---cccchhHHHHHHHHcccchhcc
Confidence            8888888777665   33222    1355677777775

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.0002  Score=67.72  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEE
Q 038858          280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEIL  359 (740)
Q Consensus       280 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  359 (740)
                      .+.++|++.++.+.   ...+...+|.|++|.|+-|.|+...  .|..|++|++|.|..|.|.+.-.-....++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34555666666555   2234444666666666666666322  255666666666666666522222334455566666


Q ss_pred             EcCCccc
Q 038858          360 VLSNNNL  366 (740)
Q Consensus       360 ~L~~n~l  366 (740)
                      .|..|.-
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            6655543

>TIGR00864 PCC polycystin cation channel protein

Probab=95.52  E-value=0.0066  Score=75.52  Aligned_cols=58  Identities=19%  Similarity=0.351  Sum_probs=45.7

Q ss_pred             EccCCcccccCCCCCccccCCCccccCCCCCCCCCCCC-------------------CCCCCCcccccCCCCCCCCc
Q 038858          621 SVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP-------------------ICRSPVTMLEASTSNEGDDN  678 (740)
Q Consensus       621 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~-------------------~c~~~~~~~~~~~~~~~~~~  678 (740)
                      ||++|+|+.+.+..|..+.+|+.+++++|||.|+|.+.                   .|..|...+++.+.....++
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d   77 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLD   77 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCccc
Confidence            57888888888888888888999999999999999751                   48888887777666554433

Note: this model has been restricted to the amino half because for technical reasons.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.24  E-value=0.018  Score=32.21  Aligned_cols=12  Identities=50%  Similarity=0.639  Sum_probs=5.0

Q ss_pred             CcEEECCCCcCC
Q 038858          593 IESLDLYHNKLN  604 (740)
Q Consensus       593 L~~L~Ls~N~l~  604 (740)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.16  E-value=0.011  Score=53.66  Aligned_cols=86  Identities=22%  Similarity=0.200  Sum_probs=61.4

Q ss_pred             CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCC-CCCCCCEEecCCCccccCccchHHHhccCCC
Q 038858           32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFP-HFKSLEYLDMNTACIALNASFLQIIGASMPF  110 (740)
Q Consensus        32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~  110 (740)
                      ..++.++-+++.+...-.+.+.+ ++.++.|.+.+|.-.++-..+.++ -.++|+.|++++|. .+++.....+.+ +++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~-lkn  177 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLK-LKN  177 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHH-hhh
Confidence            34677888888887777777877 888888888888654332211122 34788888888886 667777777777 888


Q ss_pred             CcEEEccCcc
Q 038858          111 LKYLSLSYFT  120 (740)
Q Consensus       111 L~~L~Ls~~~  120 (740)
                      |+.|.+.+-.
T Consensus       178 Lr~L~l~~l~  187 (221)
T KOG3864|consen  178 LRRLHLYDLP  187 (221)
T ss_pred             hHHHHhcCch
Confidence            8888887643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.94  E-value=0.024  Score=31.68  Aligned_cols=19  Identities=53%  Similarity=0.756  Sum_probs=9.0

Q ss_pred             CcEEeCcCCcCCCccchhcc
Q 038858          569 IQTLNLSHNNLTGTILSTFT  588 (740)
Q Consensus       569 L~~L~L~~n~l~~~~~~~~~  588 (740)
                      |++|+|++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3333343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.34  E-value=0.00062  Score=72.88  Aligned_cols=140  Identities=24%  Similarity=0.274  Sum_probs=68.6

Q ss_pred             CcEEECCCCCCcccchHHHHhc---CCCCCEEEcCCCCCCCcCC---CCCCCCC-CCCCEEecCCCccccCc--cchHHH
Q 038858           34 LEYLTLDFSSLHISLLQSIASI---FPSLKSLSMIDCKVNGVVR---SQGFPHF-KSLEYLDMNTACIALNA--SFLQII  104 (740)
Q Consensus        34 L~~L~Ls~~~~~~~~~~~l~~~---l~~L~~L~l~~~~~~~~~~---~~~l~~l-~~L~~L~L~~~~i~~~~--~~~~~l  104 (740)
                      +.+|.|.+|.+.+.....+...   ..+|+.|++++|.+.+.-.   ...+... ..|++|++..|.+...+  .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5556666665555444443321   3455556666665542100   0112222 45555666666332211  233444


Q ss_pred             hccCCCCcEEEccCcccccCCCCCCcccc----CCCCCCCEEEccCCccccc----cCccccCCCC-CCEEEccCCcCc
Q 038858          105 GASMPFLKYLSLSYFTFGTNSSRILDQGL----CPLVHLQELHMANNDLRGS----LPWCLANMTS-LRTLDVSSNQLT  174 (740)
Q Consensus       105 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l----~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~-L~~L~L~~n~l~  174 (740)
                      .. ..+++.++++.|.+...........+    ....++++|++++|.++..    +...+...++ +..|++..|.+.
T Consensus       169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            55 66677777777665411111111122    3466777777777776532    1123444444 556777777765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.79  E-value=0.0012  Score=70.79  Aligned_cols=40  Identities=25%  Similarity=0.417  Sum_probs=24.9

Q ss_pred             CCcCEEeccCCcCcccCChhHhh---cCCCCcEEEccCCcCcc
Q 038858          280 KSLRLLDVSNNNFQGRIPAEIGD---ILPSLSSFNISMNALDG  319 (740)
Q Consensus       280 ~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~~~~  319 (740)
                      +.+++++++.|.+++.....+..   .+++++++.++.|.+..
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            56677777777776544433322   24577777787777663

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.03  E-value=0.017  Score=52.57  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=60.5

Q ss_pred             CCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCC-CcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCC
Q 038858            7 LNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSS-LHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLE   85 (740)
Q Consensus         7 L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~   85 (740)
                      ++.+|-++..|..+-.   +.+.+++.++.|.+.+|. +.+-....+....++|+.|++++|+-.+.-....+.++++|+
T Consensus       103 IeaVDAsds~I~~eGl---e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGL---EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             EEEEecCCchHHHHHH---HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            5667777777776633   778899999999999986 444445566665789999999999643333333467889999


Q ss_pred             EEecCCC
Q 038858           86 YLDMNTA   92 (740)
Q Consensus        86 ~L~L~~~   92 (740)
                      .|.+.+-
T Consensus       180 ~L~l~~l  186 (221)
T KOG3864|consen  180 RLHLYDL  186 (221)
T ss_pred             HHHhcCc
Confidence            9988764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.60  E-value=0.14  Score=26.39  Aligned_cols=9  Identities=44%  Similarity=0.755  Sum_probs=2.9

Q ss_pred             cEEECCCCc
Q 038858          594 ESLDLYHNK  602 (740)
Q Consensus       594 ~~L~Ls~N~  602 (740)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.53  E-value=0.014  Score=54.15  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=49.3

Q ss_pred             cccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEc
Q 038858          543 SLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV  622 (740)
Q Consensus       543 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  622 (740)
                      ...+.||++.|++. ....-|+-++.|..|+++.|.+. ..|..+.....+..+++.+|..+ ..|.++...+++++++.
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            45566666666655 22334555566666666666665 45556666666666666666665 45556666666666666


Q ss_pred             cCCccc
Q 038858          623 AYNNLS  628 (740)
Q Consensus       623 ~~N~l~  628 (740)
                      -+|++.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.03  E-value=0.35  Score=28.19  Aligned_cols=14  Identities=36%  Similarity=0.617  Sum_probs=6.6

Q ss_pred             CCCcEEECCCCcCC
Q 038858          591 RHIESLDLYHNKLN  604 (740)
Q Consensus       591 ~~L~~L~Ls~N~l~  604 (740)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.03  E-value=0.35  Score=28.19  Aligned_cols=14  Identities=36%  Similarity=0.617  Sum_probs=6.6

Q ss_pred             CCCcEEECCCCcCC
Q 038858          591 RHIESLDLYHNKLN  604 (740)
Q Consensus       591 ~~L~~L~Ls~N~l~  604 (740)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.96  E-value=0.015  Score=53.97  Aligned_cols=87  Identities=20%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             ccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchh
Q 038858          507 LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILST  586 (740)
Q Consensus       507 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  586 (740)
                      +.....-+.||++.|++.... .        .+..++.+..|+++.|.+. ..|..+.....+..+++.+|..+ ..|.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~-~--------n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s  106 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLG-K--------NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS  106 (326)
T ss_pred             hhccceeeeehhhhhHHHhhc-c--------chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence            444556667777776654211 1        1222456667777777766 55666666666777777666666 45667


Q ss_pred             ccCcCCCcEEECCCCcCC
Q 038858          587 FTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       587 ~~~l~~L~~L~Ls~N~l~  604 (740)
                      +...+.++.+++.+|.+.
T Consensus       107 ~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccccCCcchhhhccCcch
Confidence            777777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.31  E-value=0.43  Score=27.78  Aligned_cols=16  Identities=25%  Similarity=0.250  Sum_probs=7.9

Q ss_pred             CCCCEEEccCCccccc
Q 038858          615 NALVVFSVAYNNLSGK  630 (740)
Q Consensus       615 ~~L~~L~l~~N~l~~~  630 (740)
                      ++|++|++++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.31  E-value=0.43  Score=27.78  Aligned_cols=16  Identities=25%  Similarity=0.250  Sum_probs=7.9

Q ss_pred             CCCCEEEccCCccccc
Q 038858          615 NALVVFSVAYNNLSGK  630 (740)
Q Consensus       615 ~~L~~L~l~~N~l~~~  630 (740)
                      ++|++|++++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.07  E-value=0.36  Score=27.51  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=11.5

Q ss_pred             CCCcEEECCCCCCcccchHHH
Q 038858           32 TNLEYLTLDFSSLHISLLQSI   52 (740)
Q Consensus        32 ~~L~~L~Ls~~~~~~~~~~~l   52 (740)
                      ++|++|++++|.+++.....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            566677777776665544444

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.92  E-value=0.24  Score=28.23  Aligned_cols=14  Identities=36%  Similarity=0.686  Sum_probs=5.4

Q ss_pred             CCCcEEECCCCcCC
Q 038858          591 RHIESLDLYHNKLN  604 (740)
Q Consensus       591 ~~L~~L~Ls~N~l~  604 (740)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	740
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-48
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-15
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-48
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-23
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 214/703 (30%), Positives = 326/703 (46%), Gaps = 101/703 (14%)
Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
           +SL +L L  N+L+  VTT T  L + + L++L +  ++L           FP       
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLD----------FPG------ 142
Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
              KV+G ++        SLE LD++   I+       ++      LK+L++S    G  
Sbjct: 143 ---KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNK 189
Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP--- 181
            S  +D   C  V+L+ L +++N+    +P+ L + ++L+ LD+S N+L+G  S +    
Sbjct: 190 ISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 246
Query: 182 ---LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT--FPKFLHHQ-NKLED 235
               +L+  +N+    I        P   LKSL   S  E+  T   P FL    + L  
Sbjct: 247 TELKLLNISSNQFVGPI--------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHS---HKSLRLLDVSNNNF 292
           +DLS     G  P +    +         N+  +G   LP+ +    + L++LD+S N F
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSG--ELPMDTLLKMRGLKVLDLSFNEF 355
Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSI-PSSFGN-MNFLQILDLSNNHLTGEIPEHLA 350
            G +P  + ++  SL + ++S N   G I P+   N  N LQ L L NN  TG+IP  L+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
             C  L  L LS N L G + S   +L+KL  L L  N    EIPQ L    +LE L L+
Sbjct: 416 -NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
            N+L+G+IP  L N T L +I +  N L G IP    +L++L IL +S+N+ SG++P+ L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 471 S-----------YNRLNGSIPDRI----------------------DGLLRLSHLILAHN 497
                        N  NG+IP  +                      DG+ +  H      
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 498 NLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
             +G                 +     G   P FDN         S++  +D+S N L G
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-------SMMF-LDMSYNMLSG 646
Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617
            IP +IG++  +  LNL HN+++G+I     +LR +  LDL  NKL+G+IP  +  L  L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
               ++ NNLSG IPEM  QF TF  + +  NP LCG PLP C
Sbjct: 707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 157/360 (43%), Gaps = 71/360 (19%)
Query: 336 LSNNH-----------------------LTGEIPEHLAIG-CVNLEILVLSNNNLE---- 367
           LSN+H                       L+G +    ++G C  L+ L +S+N L+    
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 368 --GHMFSKNFNLTKLS-----------WLLLEDNHFVEEIPQS---------LSKCLSLE 405
             G +   +  +  LS           W+L +    ++ +  S         +S+C++LE
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203
Query: 406 GLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS 465
            L +++NN S  IP +LG+ + LQ++ I  N L G    A      L++L IS N   G 
Sbjct: 204 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 466 LP-------SYLSY--NRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVXXXXXXXXXX 515
           +P        YLS   N+  G IPD + G    L+ L L+ N+  G VP           
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 516 XXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT-RIQTLNL 574
              S N   G +P       L + R L +L   DLS N+  G++P  + NL+  + TL+L
Sbjct: 323 LALSSNNFSGELP----MDTLLKMRGLKVL---DLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 575 SHNNLTGTILSTFTN--LRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
           S NN +G IL          ++ L L +N   GKIP  L   + LV   +++N LSG IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 214/703 (30%), Positives = 326/703 (46%), Gaps = 101/703 (14%)
Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
           +SL +L L  N+L+  VTT T  L + + L++L +  ++L           FP       
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLD----------FPG------ 139
Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
              KV+G ++        SLE LD++   I+       ++      LK+L++S    G  
Sbjct: 140 ---KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNK 186
Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP--- 181
            S  +D   C  V+L+ L +++N+    +P+ L + ++L+ LD+S N+L+G  S +    
Sbjct: 187 ISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 182 ---LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT--FPKFLHHQ-NKLED 235
               +L+  +N+    I        P   LKSL   S  E+  T   P FL    + L  
Sbjct: 244 TELKLLNISSNQFVGPI--------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHS---HKSLRLLDVSNNNF 292
           +DLS     G  P +    +         N+  +G   LP+ +    + L++LD+S N F
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSG--ELPMDTLLKMRGLKVLDLSFNEF 352
Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSI-PSSFGN-MNFLQILDLSNNHLTGEIPEHLA 350
            G +P  + ++  SL + ++S N   G I P+   N  N LQ L L NN  TG+IP  L+
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
             C  L  L LS N L G + S   +L+KL  L L  N    EIPQ L    +LE L L+
Sbjct: 413 -NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
            N+L+G+IP  L N T L +I +  N L G IP    +L++L IL +S+N+ SG++P+ L
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 471 S-----------YNRLNGSIPDRI----------------------DGLLRLSHLILAHN 497
                        N  NG+IP  +                      DG+ +  H      
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 498 NLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
             +G                 +     G   P FDN         S++  +D+S N L G
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-------SMMF-LDMSYNMLSG 643
Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617
            IP +IG++  +  LNL HN+++G+I     +LR +  LDL  NKL+G+IP  +  L  L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
               ++ NNLSG IPEM  QF TF  + +  NP LCG PLP C
Sbjct: 704 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 157/360 (43%), Gaps = 71/360 (19%)
Query: 336 LSNNH-----------------------LTGEIPEHLAIG-CVNLEILVLSNNNLE---- 367
           LSN+H                       L+G +    ++G C  L+ L +S+N L+    
Sbjct: 81  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 368 --GHMFSKNFNLTKLS-----------WLLLEDNHFVEEIPQS---------LSKCLSLE 405
             G +   +  +  LS           W+L +    ++ +  S         +S+C++LE
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 200
Query: 406 GLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS 465
            L +++NN S  IP +LG+ + LQ++ I  N L G    A      L++L IS N   G 
Sbjct: 201 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 466 LP-------SYLSY--NRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVXXXXXXXXXX 515
           +P        YLS   N+  G IPD + G    L+ L L+ N+  G VP           
Sbjct: 260 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 516 XXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT-RIQTLNL 574
              S N   G +P       L + R L +L   DLS N+  G++P  + NL+  + TL+L
Sbjct: 320 LALSSNNFSGELP----MDTLLKMRGLKVL---DLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 575 SHNNLTGTILSTFTN--LRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
           S NN +G IL          ++ L L +N   GKIP  L   + LV   +++N LSG IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 129/273 (47%), Gaps = 31/273 (11%)
Query: 408 HLNNNNLSG-------KIPQWLGNLTGLQYIIIPE-NHLEGPIPVAFCQLDSLQILGISD 459
            +NN +LSG        IP  L NL  L ++ I   N+L GPIP A  +L  L  L I+ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 460 NNISGSLPSYLS-----------YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VXX 507
            N+SG++P +LS           YN L+G++P  I  L  L  +    N + G +P    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 508 XXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567
                      S N+L G IPP F N  L         + +DLS N L GD     G+  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNL---------AFVDLSRNMLEGDASVLFGSDK 221
Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627
             Q ++L+ N+L    L      +++  LDL +N++ G +P  L +L  L   +V++NNL
Sbjct: 222 NTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 628 SGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
            G+IP+       F+ S Y  N  LCG PLP C
Sbjct: 281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 133/324 (41%), Gaps = 29/324 (8%)
Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
           RLLD+  N  +     E     P L    ++ N +    P +F N+  L+ L L +N L 
Sbjct: 35  RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 343 GEIPEHLAIGCVNLEILVLSNNN---LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
             IP  +  G  NL  L +S N    L  +MF   +NL  L    + DN  V    ++ S
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE---VGDNDLVYISHRAFS 149
Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD 459
              SLE L L   NL+    + L +L GL  + +   ++      +F +L  L++L IS 
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS- 208
Query: 460 NNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXS 519
                       +  L+   P+ + G L L+ L + H NL     +             S
Sbjct: 209 -----------HWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256
Query: 520 DNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNL 579
            N +  +     + + LHE   L  L  I L   +L    P     L  ++ LN+S N L
Sbjct: 257 YNPISTI-----EGSMLHE---LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 580 TGTILSTFTNLRHIESLDLYHNKL 603
           T    S F ++ ++E+L L  N L
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
           + L LVN       + P    KSL+ L  ++N   G   +E+   LPSL   ++S N L 
Sbjct: 331 QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGLS 384
Query: 319 ----------GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
                     G+I   + +++F  ++ +S+N L  E  EHL     NL+         + 
Sbjct: 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK---------QM 435
Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK-IPQWLGNLTG 427
             FS   +L  L +L +   H         +   SLE L +  N+     +P     L  
Sbjct: 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495
Query: 428 LQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
           L ++ + +  LE   P AF  L SLQ+L +S NN 
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	740
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-151
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-110
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-106
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  458 bits (1181), Expect = e-151
 Identities = 200/693 (28%), Positives = 301/693 (43%), Gaps = 52/693 (7%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLH--ISLLQSIASIFPSL 59
            S + L +L L ++++   V+          +L  L L  +SL   ++ L S+ S    L
Sbjct: 74  LSLTGLESLFLSNSHINGSVS----GFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGL 128

Query: 60  KSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSY- 118
           K L++    ++   +  G     SLE LD++   I+       ++      LK+L++S  
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 119 -----FTFGTNSS-RILD------QGLCP----LVHLQELHMANNDLRGSLPWCLANMTS 162
                       +   LD          P       LQ L ++ N L G     ++  T 
Sbjct: 189 KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248

Query: 163 LRTLDVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYE 218
           L+ L++SSNQ  G I   PL     L    N+   EI +  S       L  L LS  + 
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHF 306

Query: 219 DGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHS 278
            G   P F    + LE + LS    +GE P   L     L+ L L  +  +G     + +
Sbjct: 307 YG-AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

Query: 279 -HKSLRLLDVSNNNFQGRIPAEIGDI-LPSLSSFNISMNALDGSIPSSFGNMNFLQILDL 336
              SL  LD+S+NNF G I   +      +L    +  N   G IP +  N + L  L L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425

Query: 337 SNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQ 396
           S N+L+G IP  L      L  L L  N LEG +  +   +  L  L+L+ N    EIP 
Sbjct: 426 SFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

Query: 397 SLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILG 456
            LS C +L  + L+NN L+G+IP+W+G L  L  + +  N   G IP       SL  L 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 457 ISDNNISGSLPS-------YLSYNRLNGSIPDRIDGLLRLSHLILAHN--NLEGEVPVQL 507
           ++ N  +G++P+        ++ N + G     I           A N    +G    QL
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 508 CGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567
             L+     +++     G   P FDN           +  +D+S N L G IP +IG++ 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDN--------NGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627
            +  LNL HN+++G+I     +LR +  LDL  NKL+G+IP  +  L  L    ++ NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 628 SGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
           SG IPE   QF TF  + +  NP LCG PLP C
Sbjct: 717 SGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  349 bits (899), Expect = e-110
 Identities = 145/522 (27%), Positives = 235/522 (45%), Gaps = 42/522 (8%)

Query: 138 HLQELHMANNDLR---GSLPWCLANMTSLRTLDVSSNQLTGSISSSPL-----ILDAYNN 189
            +  + +++  L     ++   L ++T L +L +S++ + GS+S          LD   N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 190 EINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPN 249
            ++  +T   SL +    LK L++SS   D           N LE +DLS   ++G    
Sbjct: 111 SLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 250 WLLENN--TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSL 307
             + ++   +L+ L++  + ++G   + +    +L  LDVS+NNF   IP  +GD   +L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSAL 225

Query: 308 SSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE 367
              +IS N L G    +      L++L++S+N   G IP        +L+ L L+ N   
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFT 282

Query: 368 GHM-FSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP-QWLGNL 425
           G +    +     L+ L L  NHF   +P     C  LE L L++NN SG++P   L  +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 426 TGLQYIIIPENHLEGPIPVAFCQL-DSLQILGISDNNISGSLPS-------------YLS 471
            GL+ + +  N   G +P +   L  SL  L +S NN SG +               YL 
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCF 531
            N   G IP  +     L  L L+ N L G +P  L  L++L+ L L  N L G IP   
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 532 DNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR 591
                     +  L  + L  N L G+IP  + N T +  ++LS+N LTG I      L 
Sbjct: 463 MY--------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 592 HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPE 633
           ++  L L +N  +G IP +L +  +L+   +  N  +G IP 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  340 bits (874), Expect = e-106
 Identities = 153/617 (24%), Positives = 262/617 (42%), Gaps = 65/617 (10%)

Query: 38  TLDFSSLHIS-LLQSIASIFPSLKSLSMIDCKVNGVVRS-QGFPHFKSLEYLDMNTACIA 95
           ++D SS  ++    +++S   SL  L  +    + +  S  GF    SL  LD++   ++
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113

Query: 96  LNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPW 155
              + L  +G S   LK+L++S  T           G   L  L+ L ++ N + G+   
Sbjct: 114 GPVTTLTSLG-SCSGLKFLNVSSNTL---DFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 156 CLA---NMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLS 212
                     L+ L +S N+++G +  S  +                        L+ L 
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCV-----------------------NLEFLD 206

Query: 213 LSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPF 272
           +SS        P FL   + L+ +D+S  K++G+F   +    T+L+ L++ ++   GP 
Sbjct: 207 VSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGP- 262

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
            +P    KSL+ L ++ N F G IP  +     +L+  ++S N   G++P  FG+ + L+
Sbjct: 263 -IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLT-KLSWLLLEDNHFV 391
            L LS+N+ +GE+P    +    L++L LS N   G +     NL+  L  L L  N+F 
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 392 EEIPQSLSKCL--SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL 449
             I  +L +    +L+ L+L NN  +GKIP  L N + L  + +  N+L G IP +   L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 450 DSLQILGISDNNISGSLPS-----------YLSYNRLNGSIPDRIDGLLRLSHLILAHNN 498
             L+ L +  N + G +P             L +N L G IP  +     L+ + L++N 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 499 LEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD 558
           L GE+P  +  L  L +L LS+N   G IP    +           L  +DL+ N   G 
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--------CRSLIWLDLNTNLFNGT 553

Query: 559 IPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN--KLNGKIPCQLVELNA 616
           IP  +       +  ++ N + G       N    +      N  +  G    QL  L+ 
Sbjct: 554 IPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 617 LVVFSVAYNNLSGKIPE 633
               ++      G    
Sbjct: 610 RNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  275 bits (705), Expect = 1e-81
 Identities = 116/402 (28%), Positives = 189/402 (47%), Gaps = 35/402 (8%)

Query: 254 NNTKLESLSLVNDSLAGPFRL---PIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSF 310
            + K+ S+ L +  L   F      + S   L  L +SN++  G +         SL+S 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 311 NISMNALDGSIPS--SFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
           ++S N+L G + +  S G+ + L+ L++S+N L         +   +LE+L LS N++ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 369 HM---FSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL 425
                +  +    +L  L +  N    ++   +S+C++LE L +++NN S  IP +LG+ 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS---------YLSYNRLN 476
           + LQ++ I  N L G    A      L++L IS N   G +P           L+ N+  
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282

Query: 477 GSIPDRIDGLLR-LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPP-CFDNT 534
           G IPD + G    L+ L L+ N+  G VP      + L+ L LS N   G +P       
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK- 341

Query: 535 ALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT-RIQTLNLSHNNLTGTILSTFTN--LR 591
                  +  L  +DLS N+  G++P  + NL+  + TL+LS NN +G IL         
Sbjct: 342 -------MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 592 HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPE 633
            ++ L L +N   GKIP  L   + LV   +++N LSG IP 
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (367), Expect = 4e-36
 Identities = 80/371 (21%), Positives = 150/371 (40%), Gaps = 69/371 (18%)

Query: 1   MGSFSSLNTLCLMDNNLT-EIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSL 59
           + + S L +L L  N L+  I       L + + L  L L  + L   + Q +  +  +L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTI----PSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTL 468

Query: 60  KSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYF 119
           ++L +    + G +   G  +  +L ++ ++      N    ++ G  +P          
Sbjct: 469 ETLILDFNDLTGEI-PSGLSNCTNLNWISLSN-----N----RLTG-EIP---------- 507

Query: 120 TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
                      + +  L +L  L ++NN   G++P  L +  SL  LD+++N   G+I +
Sbjct: 508 -----------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 180 SPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLS 239
           +                            +S  +++ +  G     ++ +    ++   +
Sbjct: 557 A-------------------------MFKQSGKIAANFIAG-KRYVYIKNDGMKKECHGA 590

Query: 240 --HIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
              ++  G     L    +     ++ +    G       ++ S+  LD+S N   G IP
Sbjct: 591 GNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
            EIG  +P L   N+  N + GSIP   G++  L ILDLS+N L G IP+ ++     L 
Sbjct: 650 KEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-ALTMLT 707

Query: 358 ILVLSNNNLEG 368
            + LSNNNL G
Sbjct: 708 EIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 1e-15
 Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 15/132 (11%)

Query: 508 CGLNQLQLLDLSDNKLH---GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG 564
           C  +++  +DLS   L+     +     +        L+ L  + LS + + G +     
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLS--------LTGLESLFLSNSHINGSVSG-FK 97

Query: 565 NLTRIQTLNLSHNNLTGTI--LSTFTNLRHIESLDLYHNKLNGKIPCQ-LVELNALVVFS 621
               + +L+LS N+L+G +  L++  +   ++ L++  N L+        ++LN+L V  
Sbjct: 98  CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

Query: 622 VAYNNLSGKIPE 633
           ++ N++SG    
Sbjct: 158 LSANSISGANVV 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 42/297 (14%), Positives = 89/297 (29%), Gaps = 85/297 (28%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +G   +L  L L +N+ +  +     EL +  +L +L L+ +  + ++  ++      + 
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPA---ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
           +  +         R     +    +        +       + +   +      +++   
Sbjct: 567 ANFIAG------KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRV 619

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
           +                 +  L M+ N L G +P  + +M  L  L++  N ++GSI   
Sbjct: 620 Y---GGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 181 PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSH 240
                                      +  L                     L  +DLS 
Sbjct: 676 ---------------------------VGDLR-------------------GLNILDLSS 689

Query: 241 IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
            K++G  P         + +L+                   L  +D+SNNN  G IP
Sbjct: 690 NKLDGRIP-------QAMSALT------------------MLTEIDLSNNNLSGPIP 721

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  257 bits (659), Expect = 6e-76
 Identities = 127/703 (18%), Positives = 236/703 (33%), Gaps = 69/703 (9%)

Query: 6   SLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMI 65
           S          LT++           TN+  L L  + L      +    +  L SL + 
Sbjct: 5   SHEVADCSHLKLTQVPDDL------PTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVG 57

Query: 66  DCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS---MPFLKYLSLSYFTFG 122
              ++ +           L+ L++       +    Q+   +      L  L L      
Sbjct: 58  FNTISKLEPEL-CQKLPMLKVLNLQ------HNELSQLSDKTFAFCTNLTELHLM----S 106

Query: 123 TNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP- 181
            +  +I +       +L  L +++N L  +       + +L+ L +S+N++    S    
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 182 -------LILDAYNNEINAEITES-HSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQN-- 231
                    L+  +N+I        H++     +L  L L++         K        
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIG----RLFGLFLNNVQLGPSLTEKLCLELANT 222

Query: 232 KLEDVDLSHIKMNGEFPNWLLE-NNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNN 290
            + ++ LS+ +++       L    T L  L L  ++L             L    +  N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 291 NFQGRIPAEIG--------DILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
           N Q      +         ++  S +  +IS+ +L      SF  +  L+ L++ +N + 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 343 GEIPEHLAIGCVNLEILVLSNNNLEGHMFS----KNFNLTKLSWLLLEDNHFVEEIPQSL 398
           G        G +NL+ L LSN+       +     +   + L  L L  N   +    + 
Sbjct: 343 GIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 399 SKCLSLEGLHLNNNNLSGKIPQW-LGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGI 457
           S    LE L L  N +  ++       L  +  I +  N        +F  + SLQ L +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 458 SDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLD 517
               +               S P     L  L+ L L++NN+       L GL +L++LD
Sbjct: 462 RRVALKN-----------VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 518 LSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHN 577
           L  N L  L         ++  + LS L  ++L  N           +L  ++ ++L  N
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 578 NLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL-VELNALVVFSVAYNNLSGKIPEMTT 636
           NL     S F N   ++SL+L  N +              L    + +N        +  
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI-A 629

Query: 637 QFATFNESNYKGNPFL-----CGLPLPICRSPVTMLEASTSNE 674
            F  +    +   P L     C  P      PV + + S+  +
Sbjct: 630 WFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKD 672

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  224 bits (574), Expect = 5e-64
 Identities = 113/657 (17%), Positives = 213/657 (32%), Gaps = 123/657 (18%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
              +++  L L  N L  +          ++ L  L + F+++     +      P LK 
Sbjct: 22  DLPTNITVLNLTHNQLRRL---PAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKV 77

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L++   +++ +     F    +L  L + +  I                           
Sbjct: 78  LNLQHNELSQLSDKT-FAFCTNLTELHLMSNSI--------------------------- 109

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
                +I +       +L  L +++N L  +       + +L+ L +S+N++    S   
Sbjct: 110 ----QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 182 LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHI 241
            I                     N  LK L LSS        P   H   +L  + L+++
Sbjct: 166 DIF-------------------ANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNV 205

Query: 242 KMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIG 301
           ++       L                          ++ S+R L +SN+           
Sbjct: 206 QLGPSLTEKLCLE----------------------LANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 302 DI-LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360
            +   +L+  ++S N L+     SF  +  L+   L  N++       L  G  N+  L 
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLN 302

Query: 361 LSNNNLEGHMFSKNF---------NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN 411
           L  +  +  +   +           L  L  L +EDN          +  ++L+ L L+N
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 412 NNLSGKIPQWLG----NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLP 467
           +  S +            + L  + + +N +      AF  L  L++L +  N I   L 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 468 SYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGL- 526
                            GL  +  + L++N            +  LQ L L    L  + 
Sbjct: 423 ------------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 527 -IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLT----- 580
             P  F          L  L+ +DLS N +       +  L +++ L+L HNNL      
Sbjct: 471 SSPSPFQP--------LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 581 ---GTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEM 634
              G  +     L H+  L+L  N  +        +L  L +  +  NNL+     +
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (559), Expect = 6e-62
 Identities = 92/483 (19%), Positives = 170/483 (35%), Gaps = 32/483 (6%)

Query: 161 TSLRTLDVSSNQLT---GSISSSPLILDAYNNEINAEITES-HSLTAPNFQLKSLSLSSG 216
            S    D S  +LT     + ++  +L+  +N++      +    +    QL SL +   
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYS----QLTSLDVGFN 59

Query: 217 YEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPI 276
               +  P+       L+ ++L H +++           T L  L L+++S+      P 
Sbjct: 60  TISKLE-PELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 277 HSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNF--LQIL 334
              K+L  LD+S+N             L +L    +S N +               L+ L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 335 DLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHM---FSKNFNLTKLSWLLLEDNHFV 391
           +LS+N +    P         L  L L+N  L   +          T +  L L ++   
Sbjct: 177 ELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 392 EEIPQSLS--KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL 449
                +    K  +L  L L+ NNL+         L  L+Y  +  N+++     +   L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 450 DSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCG 509
            +++ L +  +    S    +S   L          L  L HL +  N++ G       G
Sbjct: 296 FNVRYLNLKRSFTKQS----ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 510 LNQLQLLDLSDNKL--HGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567
           L  L+ L LS++      L    F + A       S L  ++L+ NK+          L 
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLA------HSPLHILNLTKNKISKIESDAFSWLG 405

Query: 568 RIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626
            ++ L+L  N +   +    +  L +I  + L +NK           + +L    +    
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 627 LSG 629
           L  
Sbjct: 466 LKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (404), Expect = 4e-41
 Identities = 65/297 (21%), Positives = 118/297 (39%), Gaps = 29/297 (9%)

Query: 354 VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNN 413
           V+ E+   S+  L       +   T ++ L L  N        + ++   L  L +  N 
Sbjct: 4   VSHEVADCSHLKLTQ--VPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 414 LSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS----- 468
           +S   P+    L  L+ + +  N L       F    +L  L +  N+I     +     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 469 ------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG--EVPVQLCGLNQLQLLDLSD 520
                  LS+N L+ +       L  L  L+L++N ++      + +   + L+ L+LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 521 NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG---NLTRIQTLNLSHN 577
           N++    P CF          +  L G+ L+  +L   +  ++      T I+ L+LS++
Sbjct: 181 NQIKEFSPGCFHA--------IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 578 NLTGTILSTFTNLR--HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
            L+ T  +TF  L+  ++  LDL +N LN         L  L  F + YNN+     
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  228 bits (584), Expect = 4e-69
 Identities = 89/372 (23%), Positives = 147/372 (39%), Gaps = 80/372 (21%)

Query: 296 IPAEIGDILPSLSSFNISM----NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI 351
           I  ++G+   +LSS+  +         G +  +      +  LDLS  +L    P   ++
Sbjct: 14  IKKDLGN-PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 352 G-CVNLEILVLSN-NNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL 409
                L  L +   NNL G                         IP +++K   L  L++
Sbjct: 73  ANLPYLNFLYIGGINNLVG------------------------PIPPAIAKLTQLHYLYI 108

Query: 410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY 469
            + N+SG IP +L  +  L  +    N L G +P +   L +L  +              
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-------------T 155

Query: 470 LSYNRLNGSIPDRIDGLLRLS-HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP 528
              NR++G+IPD      +L   + ++ N L G++P     LN                 
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------------- 198

Query: 529 PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFT 588
                           L+ +DLS N L GD     G+    Q ++L+ N+L   +     
Sbjct: 199 ----------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVG 241

Query: 589 NLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG 648
             +++  LDL +N++ G +P  L +L  L   +V++NNL G+IP+       F+ S Y  
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 649 NPFLCGLPLPIC 660
           N  LCG PLP C
Sbjct: 301 NKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (398), Expect = 7e-43
 Identities = 70/325 (21%), Positives = 111/325 (34%), Gaps = 58/325 (17%)

Query: 142 LHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSL 201
               N    G L         +  LD+S   L         + +               L
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN---------------L 75

Query: 202 TAPNFQLKSLSLS-----SGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNT 256
                 L  L +       G       P  +    +L  + ++H  ++G  P++L     
Sbjct: 76  P----YLNFLYIGGINNLVG-----PIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIK 125

Query: 257 KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA 316
            L +L    ++L+G     I S  +L  +    N   G IP   G      +S  IS N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 317 LDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFN 376
           L G IP +F N+N L  +DLS N L G+          N + + L+ N+L          
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAF-------- 235

Query: 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN 436
                           ++   +    +L GL L NN + G +PQ L  L  L  + +  N
Sbjct: 236 ----------------DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 437 HLEGPIPVAFCQLDSLQILGISDNN 461
           +L G IP     L    +   ++N 
Sbjct: 279 NLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  110 bits (277), Expect = 9e-27
 Identities = 40/230 (17%), Positives = 85/230 (36%), Gaps = 51/230 (22%)

Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
           +  L  L  + N L G+LP  ++++ +L  +    N+++G+I                  
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD----------SY---- 169

Query: 196 TESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENN 255
                          L                        + +S  ++ G+ P      N
Sbjct: 170 ----------GSFSKL---------------------FTSMTISRNRLTGKIPPTF--AN 196

Query: 256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315
             L  + L  + L G   +   S K+ + + ++ N+    +  ++G    +L+  ++  N
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLDLRNN 254

Query: 316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN 365
            + G++P     + FL  L++S N+L GEIP+         ++   +NN 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 53/345 (15%), Positives = 95/345 (27%), Gaps = 134/345 (38%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
              + L+ L +   N++  +      L     L  L   +++L  +L  SI+S  P+L  
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPD---FLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVG 153

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           ++    +++G +    +  F  L                             +++S    
Sbjct: 154 ITFDGNRISGAIPDS-YGSFSKL--------------------------FTSMTIS---- 182

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
                                    N L G +P   AN+ +L  +D+S N L G  S   
Sbjct: 183 ------------------------RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL- 216

Query: 182 LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHI 241
                                       S                       + + L+  
Sbjct: 217 --------------------------FGSDK-------------------NTQKIHLAKN 231

Query: 242 KMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIG 301
            +  +     +  +  L  L L N+ + G                         +P  + 
Sbjct: 232 SLAFDLGK--VGLSKNLNGLDLRNNRIYGT------------------------LPQGLT 265

Query: 302 DILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIP 346
             L  L S N+S N L G IP   GN+    +   +NN      P
Sbjct: 266 Q-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  224 bits (573), Expect = 4e-64
 Identities = 72/550 (13%), Positives = 161/550 (29%), Gaps = 50/550 (9%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP-----------LILDA 186
            +  L +      G +P  +  +T L  L + S+    +                     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 187 YNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGE 246
             +     +         +  L    ++S  +   +  K      K   +      +   
Sbjct: 142 RMHYQKTFVDYDPREDFSD--LIKDCINSDPQQK-SIKKSSRITLKDTQIGQLSNNI-TF 197

Query: 247 FPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPS 306
               ++   TKL    + N                    +            +  + L  
Sbjct: 198 VSKAVM-RLTKLRQFYMGNSPFVAENICEA-----WENENSEYAQQYKTEDLKWDN-LKD 250

Query: 307 LSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG-------CVNLEIL 359
           L+   +        +P+    +  +Q+++++ N                       ++I+
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 360 VLSNNNL-EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI 418
            +  NNL    + +    + KL  L    N    ++P +    + L  L+L  N ++   
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP 369

Query: 419 PQWLGNLTGLQYIIIPENHLEG-PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG 477
             + G    ++ +    N L+  P       +  +  +  S N I               
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD------ 423

Query: 478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537
            +       + +S + L++N +           + L  ++L  N L   IP         
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENE 482

Query: 538 ERRVLSLLSGIDLSCNKLIGDIPPQI--GNLTRIQTLNLSHNNLTG-----TILSTFTNL 590
             +   LL+ IDL  NKL   +        L  +  ++LS+N+ +         ST    
Sbjct: 483 NFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541

Query: 591 RHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNP 650
                 D   N+   + P  +    +L    +  N++     ++T   +  +  +   NP
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKD---NP 598

Query: 651 FLCGLPLPIC 660
            +      +C
Sbjct: 599 NISIDLSYVC 608

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  219 bits (560), Expect = 2e-62
 Identities = 77/623 (12%), Positives = 198/623 (31%), Gaps = 95/623 (15%)

Query: 27  ELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEY 86
            L++   +  L+L+       +  +I      L  L ++    +G   ++     K +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIG----QLTELEVLALGSHGEKVNERLFGPKGISA 131

Query: 87  LDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRI-LDQGLCPLVHLQELHMA 145
              +     +   + +      P   +  L      ++  +  + +     +   ++   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 146 NNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILD--AYNNEINAEITESHSLTA 203
           +N++   +   +  +T LR   + ++             +   Y  +   E  +  +L  
Sbjct: 192 SNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK- 249

Query: 204 PNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSL 263
               L  + + +        P FL    +++ ++++                 +  S   
Sbjct: 250 ---DLTDVEVYNCPNLT-KLPTFLKALPEMQLINVAC---------------NRGISGEQ 290

Query: 264 VNDSLAGPFRLPIHSHKSLRLLDVSNNNFQ-GRIPAEIGDILPSLSSFNISMNALDGSIP 322
           + D        P+   + ++++ +  NN +   +   +   +  L       N L+G +P
Sbjct: 291 LKDDWQALADAPV--GEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP 347

Query: 323 SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLS 381
            +FG+   L  L+L+ N +T  IP +       +E L  ++N L+      +  +++ +S
Sbjct: 348 -AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 382 WLLLEDNHF-------VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
            +    N          + +  +  K +++  ++L+NN +S    +     + L  I + 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 435 ENHLEG-------PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRID--G 485
            N L              F     L  + +  N ++               + D      
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--------------KLSDDFRATT 511

Query: 486 LLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL 545
           L  L  + L++N+     P Q    + L+   + + +                       
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR----------------------- 547

Query: 546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG 605
              D   N+ + + P  I     +  L +  N++         N+     LD+  N    
Sbjct: 548 ---DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNIS 601

Query: 606 KIPCQLVELNALVVFSVAYNNLS 628
                +       ++ + Y+   
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (491), Expect = 7e-53
 Identities = 52/343 (15%), Positives = 116/343 (33%), Gaps = 17/343 (4%)

Query: 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
             +  +FN  ++        S  +   +  L L     +G +P+ +      LE+L L +
Sbjct: 56  PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGS 114

Query: 364 NNLEGHMFSKNF----NLTKLSWLLLEDNHFVEEIPQSLSK--CLSLEGLHLNNNNLSGK 417
           +  + +                       H+ +       +     L    +N++     
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 418 IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLP------SYLS 471
           I +          I    N++   +  A  +L  L+   + ++                 
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233

Query: 472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCF 531
           Y +   +   + D L  L+ + + +     ++P  L  L ++QL++++ N+         
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

Query: 532 DNTALHERRVLSLLSGIDLSCNKLI-GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL 590
           D  AL +  V   +  I +  N L    +   +  + ++  L   +N L G +   F + 
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSE 352

Query: 591 RHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPE 633
             + SL+L +N++             +   S A+N L   IP 
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  186 bits (474), Expect = 1e-50
 Identities = 62/425 (14%), Positives = 135/425 (31%), Gaps = 52/425 (12%)

Query: 227 LHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSH----KSL 282
           L+   ++  + L     +G  P+  +   T+LE L+L +       RL          S 
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 283 RLLDVSNNNFQGRIPAEIGD-ILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL 341
                   ++Q              L    I+ +    SI  S         +   +N++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 342 TGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKC 401
           T  + + +      L    + N+        + +          E     +         
Sbjct: 196 TF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNL 248

Query: 402 LSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL--------EGPIPVAFCQLDSLQ 453
             L  + + N     K+P +L  L  +Q I +  N          +          + +Q
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 454 ILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQL 513
           I+ I  NN+                +   +  + +L  L   +N LEG++P       +L
Sbjct: 309 IIYIGYNNLK------------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355

Query: 514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP--QIGNLTRIQT 571
             L+L+ N++  +                  +  +  + NKL   IP      +++ +  
Sbjct: 356 ASLNLAYNQITEIPANFCGF--------TEQVENLSFAHNKL-KYIPNIFDAKSVSVMSA 406

Query: 572 LNLSHNNLTGTILSTFT-------NLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY 624
           ++ S+N +       F           ++ S++L +N+++          + L   ++  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 625 NNLSG 629
           N L+ 
Sbjct: 467 NMLTE 471

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  220 bits (563), Expect = 5e-63
 Identities = 100/585 (17%), Positives = 183/585 (31%), Gaps = 61/585 (10%)

Query: 96  LNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPW 155
           +  +F +I        K L LS+         +          LQ L ++  +++     
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 156 CLANMTSLRTLDVSSNQLTGSISSSPL------ILDAYNNEINAEITES-HSLTAPNFQL 208
              +++ L TL ++ N +      +         L A    + +        L      L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TL 126

Query: 209 KSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL 268
           K L+++         P++  +   LE +DLS  K+   +   L     ++  L+L  D  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLS 185

Query: 269 AGPFRLPIHS---HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS----- 320
             P             L  L + NN     +       L  L    + +           
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 321 -IPSSFGNMNFLQILDLSNNHLTGEIPEHLAI--GCVNLEILVLSNNNLEGHMFSKNFNL 377
              S+   +  L I +    +L   + + + +     N+    L +  +E          
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYN 303

Query: 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENH 437
                L L +  F +     L     L        +  G       +L  L+++ +  N 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 438 L--EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495
           L  +G    +     SL+ L +S N +                +     GL +L HL   
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT--------------MSSNFLGLEQLEHLDFQ 404

Query: 496 HNNLEGEVPVQ-LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNK 554
           H+NL+          L  L  LD+S           F+         LS L  + ++ N 
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNS 456

Query: 555 LIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE 613
              +  P I   L  +  L+LS   L     + F +L  ++ L++ HN            
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 614 LNALVVFSVAYNNLSGKIPEMTTQFATFNES-NYKGNPFLCGLPL 657
           LN+L V   + N++     +    F +     N   N F C    
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (554), Expect = 8e-62
 Identities = 104/618 (16%), Positives = 198/618 (32%), Gaps = 81/618 (13%)

Query: 33  NLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTA 92
            +  +T     L  +  +   ++  S K+L +    +  +     F  F  L+ LD++  
Sbjct: 6   VVPNITYQCMEL--NFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS-- 60

Query: 93  CIALNASFLQIIGAS---MPFLKYLSLSYFTFGTNS-SRILDQGLCPLVHLQELHMANND 148
                     I   +   +  L  L L+      N    +       L  LQ+L     +
Sbjct: 61  ----RCEIQTIEDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 149 LRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL-------ILDAYNNEINAEITES-HS 200
           L     + + ++ +L+ L+V+ N +                 LD  +N+I +        
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 201 LTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLES 260
           L        SL LS    + +        + +L  + L +   +       ++    LE 
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 261 LSLVNDSLAGPFRLPIHSH---KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
             LV         L        + L  L +                   L+  +  ++  
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR---------------LAYLDYYLD-- 272

Query: 318 DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL 377
              I   F  +  +    L +  +               + L L N         K  +L
Sbjct: 273 --DIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS--GKIPQWLGNLTGLQYIIIPE 435
            +L++   +          S     SLE L L+ N LS  G   Q     T L+Y+ +  
Sbjct: 328 KRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495
           N +   +   F  L+ L+ L    +N+       +               L  L +L ++
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV------------FLSLRNLIYLDIS 429

Query: 496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
           H +          GL+ L++L ++ N       P            L  L+ +DLS  +L
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------LRNLTFLDLSQCQL 482

Query: 556 IGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVEL- 614
               P    +L+ +Q LN+SHNN        +  L  ++ LD   N +      +L    
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

Query: 615 NALVVFSVAYNNLSGKIP 632
           ++L   ++  N+ +    
Sbjct: 543 SSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  167 bits (425), Expect = 3e-44
 Identities = 85/522 (16%), Positives = 163/522 (31%), Gaps = 69/522 (13%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
             + ++L  L L  N +  I  T  + LH    L  L+LD S   ++ +Q  A     L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-NLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
            L++ +   +  V          LE   +         +  +   +++  L  L++  F 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
                                     +     +      +T++ +  + S  +      S
Sbjct: 264 LAY----------------------LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 181 PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSH 240
                                    F  + L L +         K    +     +  + 
Sbjct: 302 YN-----------------------FGWQHLELVNCKFGQFPTLKLKSLKR----LTFTS 334

Query: 241 IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEI 300
            K    F    L +   L  LS    S  G          SL+ LD+S N         +
Sbjct: 335 NKGGNAFSEVDLPSLEFL-DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 301 GDILPSLSSFNISMNALDGSIPSS-FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEIL 359
           G  L  L   +   + L      S F ++  L  LD+S+ H           G  +LE+L
Sbjct: 394 G--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL 450

Query: 360 VLSNNNLEGHMFSKNF-NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI 418
            ++ N+ + +     F  L  L++L L      +  P + +   SL+ L++++NN     
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 419 PQWLGNLTGLQYIIIPENHLEGPIPVAFCQL-DSLQILGISDNNISGSLPSYLSYNRLNG 477
                 L  LQ +    NH+             SL  L ++ N+ + +            
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE---------- 560

Query: 478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLS 519
                +  +     L++    +E   P    G+  +  L+++
Sbjct: 561 -HQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  138 bits (349), Expect = 2e-34
 Identities = 54/345 (15%), Positives = 94/345 (27%), Gaps = 27/345 (7%)

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE 392
                  +   +IP++L     + + L LS N L        F+  +L  L L       
Sbjct: 11  TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
               +      L  L L  N +          L+ LQ ++  E +L          L +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 453 QILGISDNNISGSLPS------------YLSYNRLNGSIPDRIDGLLRLS----HLILAH 496
           + L ++ N I                   LS N++       +  L ++      L L+ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 497 NNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556
           N +    P     +  L  L L +N     +        L    V  L+ G   +   L 
Sbjct: 187 NPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLE 244

Query: 557 GDIPPQIGNLTRIQTLNLSHNNL---TGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE 613
                 +  L  +         L      I+  F  L ++ S  L    +          
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 302

Query: 614 LNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP 658
                   +                     ++ KG      + LP
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  222 bits (568), Expect = 4e-62
 Identities = 83/536 (15%), Positives = 163/536 (30%), Gaps = 64/536 (11%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS------SPLILDAYNNEI 191
            +  L +A    +G +P  +  +T L+ L   ++  T S         +P + +   + I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 192 NAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL 251
                +          L  L   +   +    P     +  L+D  + ++     F +  
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN 311
           ++  TKL+ +   N           +        +               + L  L+   
Sbjct: 444 IQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVE 497

Query: 312 ISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI--------GCVNLEILVLSN 363
           +        +P    ++  LQ L+++ N                        ++I  +  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 364 NNLEGHMFSKNF-NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWL 422
           NNLE    S +   + KL  L    N       ++    + L  L L+ N +      + 
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 423 GNLTGLQYIIIPENHLEG-PIPVAFCQLDSLQILGISDNNISGSLPS------------- 468
                ++ +    N L+  P       +  +  +  S N I     +             
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 469 ---YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLE-------GEVPVQLCGLNQLQLLDL 518
               LSYN +     +       +S +IL++N +                    L  +DL
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSH-- 576
             NKL  L       T       L  LS +D+S N      P Q  N ++++   + H  
Sbjct: 736 RFNKLTSLSDDFRATT-------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787

Query: 577 ----NNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
               N +     +  T    +  L +  N +  K+  +L     L +  +A N   
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (490), Expect = 1e-51
 Identities = 80/623 (12%), Positives = 169/623 (27%), Gaps = 122/623 (19%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           + +   +  L L        V      +   T L+ L+    S  +    S         
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETV----SGRLFGDEEL 371

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
           +  M + + +                         +   + ++       L    L    
Sbjct: 372 TPDMSEERKH------------------------RIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRG------SLPWCLANMTSLRTLDVSSNQLT 174
              N        + P+     + + +  +         +   +  +T L+ +  +++  T
Sbjct: 408 INRNPE------MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT 461

Query: 175 GSISSSPL--ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNK 232
               +         Y  +   E     +L      L  + L +        P FL+   +
Sbjct: 462 YDNIAVDWEDANSDYAKQYENEELSWSNLK----DLTDVELYNCPNMT-QLPDFLYDLPE 516

Query: 233 LEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLP--IHSHKSLRLLDVSNN 290
           L+ ++++              N              A   RL     +   +++  +  N
Sbjct: 517 LQSLNIAC-------------NR-----GISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 291 NFQGRIPAEIG-DILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHL 349
           N +   PA      +  L   +   N +      +FG    L  L L  N +  EIPE  
Sbjct: 559 NLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDF 614

Query: 350 AIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQ--SLSKCLSLEGL 407
                 +E L  S+N L                         + IP   +      +  +
Sbjct: 615 CAFTDQVEGLGFSHNKL-------------------------KYIPNIFNAKSVYVMGSV 649

Query: 408 HLNNNNLSGKIPQWLG-----NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
             + N +  +                  + +  N ++      F     +  + +S+N +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 463 SGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP--VQLCGLNQLQLLDLSD 520
           + S+P                     L+ + L  N L   +    +   L  L  +D+S 
Sbjct: 710 T-SIPE-----NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762

Query: 521 NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLT 580
           N      P    N    + +   +    D   N+++   P  I     +  L +  N++ 
Sbjct: 763 NCFSS-FPTQPLN--SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 581 GTILSTFTNLRHIESLDLYHNKL 603
                    L     LD+  N  
Sbjct: 820 KVDEKLTPQLYI---LDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (422), Expect = 5e-43
 Identities = 72/487 (14%), Positives = 158/487 (32%), Gaps = 60/487 (12%)

Query: 188 NNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEF 247
            + I     E+ S+   +F +    L+      +   +   +    + +      ++G  
Sbjct: 226 QSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDG-- 283

Query: 248 PNWLLENNTKLESLSLVN-------DSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEI 300
            NW   + T   ++  +N       D       + + ++  +  L ++    +GR+P  I
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 301 GDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360
           G  L  L   +   ++   S            + +   + +     +        L +  
Sbjct: 344 GQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHF------VEEIPQSLSKCLSLEGLHLNNNNL 414
           L  + +      +   + K S + L+D         +  I +++ +   L+ ++  N+  
Sbjct: 403 LLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 415 SG-------------------KIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455
           +                           NL  L  + +        +P     L  LQ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG-EVPVQLCGLNQLQ 514
            I+ N    +      +      + D  D   ++    + +NNLE       L  + +L 
Sbjct: 521 NIACNRGISAAQLKADWT----RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR-IQTLN 573
           LLD   NK+  L    F             L+ + L  N++   IP      T  ++ L 
Sbjct: 577 LLDCVHNKVRHL--EAFGT--------NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLG 625

Query: 574 LSHNNLTG-TILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA-----LVVFSVAYNNL 627
            SHN L     +    ++  + S+D  +NK+  +       ++          +++YN +
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 628 SGKIPEM 634
                E+
Sbjct: 686 QKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 8e-10
 Identities = 50/352 (14%), Positives = 96/352 (27%), Gaps = 88/352 (25%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASI--FPS 58
            G+   L  L L  N + EI             +E   L FS   +  + +I +      
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDF---CAFTDQVEG--LGFSHNKLKYIPNIFNAKSVYV 645

Query: 59  LKSLSMIDCKVNGVVRSQGFP----HFKSLEYLDMNTACIALNASFLQIIGASMPFLKYL 114
           + S+     K+    R+           +   + ++   I     F   + A+   +  +
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI---QKFPTELFATGSPISTI 702

Query: 115 SLSY---FTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSS 170
            LS     +   NS +  D        L  + +  N L   S  +    +  L  +DVS 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762

Query: 171 NQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQ 230
           N  +                                               +FP    + 
Sbjct: 763 NCFS-----------------------------------------------SFPTQPLNS 775

Query: 231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNN 290
           ++L+   + H            E N  L                 I +  SL  L + +N
Sbjct: 776 SQLKAFGIRH--------QRDAEGNRILRQWPTG-----------ITTCPSLIQLQIGSN 816

Query: 291 NFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
           + +  +  +   + P L   +I+ N       +S        +  L  +   
Sbjct: 817 DIRK-VDEK---LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 14/95 (14%), Positives = 36/95 (37%)

Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
              ++G+ L+     G +P  IG LT ++ L+   ++ T +           +  +   +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 602 KLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT 636
           ++        ++ +  +  S    +   + PEM  
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  203 bits (518), Expect = 8e-57
 Identities = 113/593 (19%), Positives = 196/593 (33%), Gaps = 63/593 (10%)

Query: 8   NTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDC 67
            T    +  L EI            + E L   F+ L  ++  +  S   +L  L +  C
Sbjct: 15  KTYNCENLGLNEIPG------TLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRC 67

Query: 68  KVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS----MPFLKYLSLSYFTFGT 123
           ++  +     F     L+ L        L A+ L  +  +       LK+L         
Sbjct: 68  QIYWI-HEDTFQSQHRLDTLV-------LTANPLIFMAETALSGPKALKHLFFIQ----- 114

Query: 124 NS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP- 181
              S I    L     L+ L++ +N +             L+ LD  +N +         
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 182 -------LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQ-NKL 233
                  L L+   N+I             +   +SL+        V F    +     L
Sbjct: 175 SLQQATNLSLNLNGNDI----AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 234 EDVDLSHIKMNGEFPNWLLEN-NTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF 292
                  +      P          +ES++L             H    L+ LD++  + 
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG 352
              +P+ +   L +L    +S N  +     S  N   L  L +  N    E+       
Sbjct: 291 S-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 353 CVNLEILVLSNNNLEGHMFSKN--FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
             NL  L LS++++E          NL+ L  L L  N  +    ++  +C  LE L L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 411 NNNLSGKIPQ-WLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY 469
              L  K  Q    NL  L+ + +  + L+      F  L +LQ L +  N+        
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK----- 463

Query: 470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPP 529
                 N    + +  L RL  L+L+  +L          L  +  +DLS N+L      
Sbjct: 464 -----GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 530 CFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT 582
              +        L  +  ++L+ N +   +P  +  L++ +T+NL  N L  T
Sbjct: 519 ALSH--------LKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (514), Expect = 3e-56
 Identities = 108/562 (19%), Positives = 192/562 (34%), Gaps = 50/562 (8%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
              + L  S+         I +     L++L  L +    +         +   L TL +
Sbjct: 33  NSTECLEFSF----NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 169 SSNQLTGSISS--SPL----ILDAYNNEINAEITES-HSLTAPNFQLKSLSLSSGYEDGV 221
           ++N L     +  S       L      I++      H+       L+SL L S +   +
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK----TLESLYLGSNHISSI 144

Query: 222 TFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLE-NNTKLESLSLVNDSLAGPFRLPIHSHK 280
             PK    +  L+ +D  +  ++      +         SL+L  + +AG       S  
Sbjct: 145 KLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNF--LQILDLSN 338
              L      N            + SL          +   P+ F  +    ++ ++L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 339 NHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSL 398
           ++               L+ L L+  +L   + S    L+ L  L+L  N F      S 
Sbjct: 264 HYFFNISSNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 399 SKCLSLEGLHLNNNNLSGKI-PQWLGNLTGLQYIIIPENHLE--GPIPVAFCQLDSLQIL 455
           S   SL  L +  N    ++    L NL  L+ + +  + +E      +    L  LQ L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG-EVPVQLCGLNQLQ 514
                         LSYN       +      +L  L LA   L+  +       L+ L+
Sbjct: 382 -------------NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL---IGDIPPQIGNLTRIQT 571
           +L+LS + L       FD         L  L  ++L  N            +  L R++ 
Sbjct: 429 VLNLSHSLLDISSEQLFDG--------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKI 631
           L LS  +L+      FT+L+ +  +DL HN+L       L  L  + + ++A N++S  +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIIL 539

Query: 632 PEMTTQFATFNESNYKGNPFLC 653
           P +    +     N + NP  C
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  161 bits (409), Expect = 4e-42
 Identities = 60/366 (16%), Positives = 106/366 (28%), Gaps = 52/366 (14%)

Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
           +  +  N      IP   G +  S      S N L     ++F  +  L  LDL+   + 
Sbjct: 15  KTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 343 GEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL 402
               +        L+ LVL+ N L                              +LS   
Sbjct: 71  WIHEDTFQ-SQHRLDTLVLTANPLIF------------------------MAETALSGPK 105

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
           +L+ L      +S      L N   L+ + +  NH+           + L++L   +N I
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 463 SGSLPS-------------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQL-- 507
                               L+ N +   I            L          +   L  
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 508 CGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567
             +  L L    D     + P  F+         +S+ S I+L  +             +
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCE-----MSVES-INLQKHYFFNISSNTFHCFS 278

Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627
            +Q L+L+  +L+  + S    L  ++ L L  NK             +L   S+  N  
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 628 SGKIPE 633
             ++  
Sbjct: 338 RLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (394), Expect = 4e-40
 Identities = 103/576 (17%), Positives = 188/576 (32%), Gaps = 71/576 (12%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
            S   L+TL L  N L  +  T    L     L++L    + +             + K+
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETA---LSGPKALKHLFFIQTGIS----SIDFIPLHNQKT 130

Query: 62  LSMIDCKVNG--VVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYF 119
           L  +    N    ++       + L+ LD        N +   +    M  L+  +    
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQ------NNAIHYLSKEDMSSLQQATNLSL 184

Query: 120 TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLAN--MTSLRTLDVSSNQLTGSI 177
               N    ++ G       Q L+         +   L N  + SL              
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 178 SSSP--------LILDAYNNEINAEITES-HSLTAPNFQLKSLSLSSGYEDGVTFPKFLH 228
            +            ++   +      + + H  +     L+ L L++ +      P  L 
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS----GLQELDLTATH--LSELPSGLV 298

Query: 229 HQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLV-NDSLAGPFRLPIHSHKSLRLLDV 287
             + L+ + LS  K           N   L  LS+  N          + + ++LR LD+
Sbjct: 299 GLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 288 SNNNFQGRIPAEIGDI--LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEI 345
           S+++ +         +  L  L S N+S N        +F     L++LDL+   L  + 
Sbjct: 358 SHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 346 PEHLAIGCVNLEILVLSNNNLEG---HMFSKNFNLTKLSWLLLEDNHFVEEIPQ---SLS 399
            +        L++L LS++ L+     +F     L  L  L L+ NHF +   Q   SL 
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFD---GLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD 459
               LE L L+  +LS        +L  + ++ +  N L      A   L  + +     
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL----- 528

Query: 460 NNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQL-QLLDL 518
                     L+ N ++  +P  +  L +   + L  N L+       C      +    
Sbjct: 529 ---------NLASNHISIILPSLLPILSQQRTINLRQNPLDCT-----CSNIYFLEWYKE 574

Query: 519 SDNKLHGLIPP-CFDNTALHERRVLSLLSGIDLSCN 553
           +  KL       C +   L   R+  +     LSC+
Sbjct: 575 NMQKLEDTEDTLCENPPLLRGVRLSDV----TLSCS 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 9e-14
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 11/144 (7%)

Query: 491 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDL 550
                +  L  E+P  L   N  + L+ S N L  +    F          L  L+ +DL
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSR--------LINLTFLDL 64

Query: 551 SCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQ 610
           +  ++         +  R+ TL L+ N L     +  +  + ++ L      ++      
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 611 LVELNALVVFSVAYNNLSGKIPEM 634
           L     L    +  N++S      
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPK 148

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 7e-13
 Identities = 46/299 (15%), Positives = 99/299 (33%), Gaps = 39/299 (13%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +   S+L  L L  N    +         NF +L +L++  ++  + L         +L+
Sbjct: 297 LVGLSTLKKLVLSANKFENL---CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 61  SLSMIDCKVNGV-VRSQGFPHFKSLEYLDMNTACIALNASFLQIIG---ASMPFLKYLSL 116
            L +    +      +    +   L+ L+++          L +        P L+ L L
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLS------YNEPLSLKTEAFKECPQLELLDL 407

Query: 117 SYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG 175
           ++    T       Q     L  L+ L+++++ L  S       + +L+ L++  N    
Sbjct: 408 AF----TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 176 SISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLED 235
                   L               +L     +L+ L LS      +           +  
Sbjct: 464 GNIQKTNSL--------------QTLG----RLEILVLSFCDLSSID-QHAFTSLKMMNH 504

Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQG 294
           VDLSH ++       L  ++ K   L+L ++ ++      +      R +++  N    
Sbjct: 505 VDLSHNRLTSSSIEAL--SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (482), Expect = 8e-52
 Identities = 101/612 (16%), Positives = 187/612 (30%), Gaps = 79/612 (12%)

Query: 33  NLEYLTLDFSSLHISLLQSI-ASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNT 91
            +  +T          L  +   I  S K++ +    +  + +S  F +F  L++LD   
Sbjct: 10  VVPNITYQCMDQK---LSKVPDDIPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLD--- 62

Query: 92  ACIALNASFLQIIG----ASMPFLKYLSLSYFTFGTNS-SRILDQGLCPLVHLQELHMAN 146
               L+   ++ I       +  L  L L+      N            L  L+ L    
Sbjct: 63  ----LSRCEIETIEDKAWHGLHHLSNLILTG-----NPIQSFSPGSFSGLTSLENLVAVE 113

Query: 147 NDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL-------ILDAYNNEINAEITES- 198
             L     + +  + +L+ L+V+ N +      +          +D   N I        
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 199 HSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL 258
             L        SL +S    D +    F     KL ++ L     +       L+N   L
Sbjct: 174 QFLRENPQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
               L+         L I     +  L                    ++  F ++     
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------TIDEFRLTYTNDF 274

Query: 319 GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLT 378
                 F  +  +  + L+   +   + +         + L +    L+        +L 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIK-YLEDV--PKHFKWQSLSIIRCQLKQFPT---LDLP 328

Query: 379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQ--WLGNLTGLQYIIIPEN 436
            L  L L  N     I        SL  L L+ N LS              L+++ +  N
Sbjct: 329 FLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 437 HLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAH 496
                +   F  L+ LQ L    + +                       L +L +L +++
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA------------FLSLEKLLYLDISY 433

Query: 497 NNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556
            N + +      GL  L  L ++ N                     + L+ +DLS  +L 
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-------TTNLTFLDLSKCQLE 486

Query: 557 GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA 616
                    L R+Q LN+SHNNL     S +  L  + +LD   N++            +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 617 LVVFSVAYNNLS 628
           L  F++  N+++
Sbjct: 547 LAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  183 bits (466), Expect = 1e-49
 Identities = 108/614 (17%), Positives = 188/614 (30%), Gaps = 99/614 (16%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            SS   + L  N L  + + +     NF+ L++L L    +     ++       L +L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS---FSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLI 86

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGT 123
           +    +        F    SLE L                                   T
Sbjct: 87  LTGNPIQSFSPGS-FSGLTSLENLVAV-------------------------------ET 114

Query: 124 NSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
             + +    +  L+ L++L++A+N +    LP   +N+T+L  +D+S N +     +   
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-- 172

Query: 183 ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIK 242
                             L        SL +S    D +    F     KL ++ L    
Sbjct: 173 ---------------LQFLRENPQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNF 215

Query: 243 MNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLR--------LLDVSNNNFQG 294
            +       L+N   L    L+         L I     +            ++  N   
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 295 RIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCV 354
               +    L ++S+ +++  ++              Q L +    L       L     
Sbjct: 276 DDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---- 328

Query: 355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNH--FVEEIPQSLSKCLSLEGLHLNNN 412
            L+ L L+ N        K   L  LS+L L  N   F      S     SL  L L+ N
Sbjct: 329 FLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPV-AFCQLDSLQILGISDNNISGSLPSYLS 471
                +      L  LQ++    + L+      AF  L+ L  L              +S
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL-------------DIS 432

Query: 472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNKLHGLIPPC 530
           Y            GL  L+ L +A N+ +             L  LDLS  +L  +    
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 531 FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL 590
           FD         L  L  +++S N L+         L  + TL+ S N +  +        
Sbjct: 493 FDT--------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 591 RHIESLDLYHNKLN 604
           + +   +L +N + 
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (359), Expect = 1e-35
 Identities = 77/474 (16%), Positives = 156/474 (32%), Gaps = 52/474 (10%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLD---FSSLHISLLQSIASIFPS 58
           G   +L  L +  N +            N TNL ++ L      ++ ++ LQ +      
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 59  LKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSY 118
             SL M    ++ +           L  L +       +++ ++    ++  L    L  
Sbjct: 183 NLSLDMSLNPIDFI--QDQAFQGIKLHELTLR--GNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 119 FTF-GTNSSRILD----QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQL 173
             F    +  I +    +GLC +  + E  +   +           + ++  + ++   +
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 174 TGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKL 233
                                           F+ +SLS+                   L
Sbjct: 298 KYLEDVPKH-----------------------FKWQSLSIIRCQLKQFPTLDLPF----L 330

Query: 234 EDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIH--SHKSLRLLDVSNNN 291
           + + L+  K +  F    L +   L  L L  ++L+             SLR LD+S N 
Sbjct: 331 KSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 292 FQGRIPAEIGDILPSLSSFNISMNALDGSIP-SSFGNMNFLQILDLSNNHLTGEIPEHLA 350
               + A     L  L   +   + L      S+F ++  L  LD+S  +   +      
Sbjct: 388 AII-MSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 351 IGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL 409
            G  +L  L ++ N+ + +  S  F N T L++L L      +           L+ L++
Sbjct: 446 -GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463
           ++NNL          L  L  +    N +E    +      SL    +++N+++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (323), Expect = 4e-31
 Identities = 59/332 (17%), Positives = 110/332 (33%), Gaps = 33/332 (9%)

Query: 319 GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG---HMFSKNF 375
           GS+      +  +      +  L+ ++P+ +     + + + LS N L+    + FS   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFS--- 53

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
           N ++L WL L          ++      L  L L  N +    P     LT L+ ++  E
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISG--------SLPS----YLSYNRLNGSIPDRI 483
             L         QL +L+ L ++ N I          +L +     LSYN +     + +
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 484 DGLLRLS----HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHER 539
             L         L ++ N ++  +  Q     +L  L L  N     I        L   
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGL 231

Query: 540 RVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQT--LNLSHNNLTGTILSTFTNLRHIESLD 597
            V  L+ G       L    P  +  L  +      L++ N     +  F  L ++ ++ 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 598 LYHNKLNGKIPCQLVELNALVVFSVAYNNLSG 629
           L    +       + +       S+    L  
Sbjct: 292 LAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (323), Expect = 5e-31
 Identities = 65/414 (15%), Positives = 134/414 (32%), Gaps = 29/414 (7%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
             + ++L  + L  N +  I     Q L     +  L+LD S   I  +Q  A     L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN-LSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
            L++     +  +      +   L    +         +      + M  L  +++  F 
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 121 FGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCL-------------------ANM 160
               +    D      L ++  + +A   ++                           ++
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 161 TSLRTLDVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSG 216
             L++L ++ N+ + S     L     LD   N ++               L+ L LS  
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLS-- 384

Query: 217 YEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPI 276
           +   +          +L+ +D  H  +          +  KL  L +   +    F    
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 277 HSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDL 336
               SL  L ++ N+F+    + +     +L+  ++S   L+      F  ++ LQ+L++
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 337 SNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF 390
           S+N+L      H      +L  L  S N +E            L++  L +N  
Sbjct: 505 SHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  172 bits (438), Expect = 5e-45
 Identities = 130/724 (17%), Positives = 242/724 (33%), Gaps = 107/724 (14%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            ++   L L  N +  +   T         L+ L L      +++ +      P+L+ L 
Sbjct: 23  LNTTERLLLSFNYIRTV---TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGT 123
           +   K+   +    F     L  L +    +                             
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGL----------------------------- 109

Query: 124 NSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
           + + + D     L  L  L ++ N +R   L      + SL+++D SSNQ+   +    L
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHEL 168

Query: 183 ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIK 242
                             L      L   SL++          +    N   ++ L  + 
Sbjct: 169 ----------------EPLQGKT--LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 243 MNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEI-- 300
                   +  N   ++     +++++      +     +       +N +         
Sbjct: 211 --------VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFA 261

Query: 301 GDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360
           G    S+   ++S   +       F  +  L++L+L+ N +  +I +    G  NL++L 
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLN 320

Query: 361 LSNNNLEGHMFSKNF-NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP 419
           LS N L   ++S NF  L K++++ L+ NH      Q+      L+ L L +N L+    
Sbjct: 321 LSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT--- 376

Query: 420 QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG-S 478
             +  +  +  I +  N L            +L  + ++ N I      +LS NRL    
Sbjct: 377 --IHFIPSIPDIFLSGNKLV-----------TLPKINLTANLI------HLSENRLENLD 417

Query: 479 IPDRIDGLLRLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNKLHGLIPPCFDNTALH 537
           I   +  +  L  LIL  N        Q       L+ L L +N L              
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 538 ERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESL 596
               LS L  + L+ N  +  +PP +  +LT ++ L+L+ N LT   LS      ++E L
Sbjct: 478 G---LSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEIL 531

Query: 597 DLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMT-TQFATFNESNYKGNP--FLC 653
           D+  N+L    P   V L+   V  + +N    +    T   +         G P    C
Sbjct: 532 DISRNQLLAPNPDVFVSLS---VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYC 588

Query: 654 GLPLPICRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRR 713
             P       +  L        D+  +     F+ F    V +   ++ IL V  +    
Sbjct: 589 VYPDSFSGVSLFSLSTEGC---DEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFC 645

Query: 714 WFYL 717
           +   
Sbjct: 646 FICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  143 bits (362), Expect = 2e-35
 Identities = 115/611 (18%), Positives = 199/611 (32%), Gaps = 111/611 (18%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
           +  +L  L L  + +  +            +L  L L F  L  ++L+            
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDA---FQGLFHLFELRLYFCGLSDAVLKDGY--------- 118

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDM---NTACIALNASFLQIIGASMPFLKYLSLSYF 119
                          F + K+L  LD+       + L+ SF       +  LK +  S  
Sbjct: 119 ---------------FRNLKALTRLDLSKNQIRSLYLHPSF-----GKLNSLKSIDFSSN 158

Query: 120 TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANM------TSLRTLDVSSNQL 173
                    L + L     L    +A N L   +               L  LDVS N  
Sbjct: 159 QIFLVCEHEL-EPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 174 TGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKL 233
           T        I   ++N I+     S  L      +                      + +
Sbjct: 217 T------VDITGNFSNAISKSQAFSLIL---AHHIMGAGFGF---------------HNI 252

Query: 234 EDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQ 293
           +D D +                + +  L L +  +         + K L++L+++ N   
Sbjct: 253 KDPDQNTFA---------GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 294 GRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGC 353
            +I  E    L +L   N+S N L     S+F  +  +  +DL  NH+   I +      
Sbjct: 304 -KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFL 361

Query: 354 VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNN 413
             L+ L L +N L     +    +  +  + L  N  V          L+   +HL+ N 
Sbjct: 362 EKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVT----LPKINLTANLIHLSENR 412

Query: 414 LSG-KIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQ-LDSLQILGISDNNISGSLPSYLS 471
           L    I  +L  +  LQ +I+ +N               SL+ L + +N +  +  + L 
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCF 531
                    D  +GL  L  L L HN L    P     L  L+ L L+ N+L  L     
Sbjct: 473 --------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

Query: 532 DNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNL 590
                      + L  +D+S N+ +    P +     +  L+++HN       LSTF N 
Sbjct: 525 ----------PANLEILDISRNQ-LLAPNPDV--FVSLSVLDITHNKFICECELSTFINW 571

Query: 591 RHIESLDLYHN 601
            +  ++ +   
Sbjct: 572 LNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 48/255 (18%), Positives = 79/255 (30%), Gaps = 23/255 (9%)

Query: 3   SFSSLNTLCLMDNNLTEI-----VTTTTQELHNFTNLEYLTLDFSSLHISLLQ----SIA 53
               L TL L DN LT I     +       +    L  + L  + +H+S  +     I 
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

Query: 54  SIFPSLKSLSMIDCKVN---GVVRSQGFPHFKSLEYLDM--NTACIALNASFLQIIGASM 108
                +  L ++    N        Q      SLE L +  N   +A        +   +
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 109 PFLKYLSLSYFTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLD 167
             L+ L L++     N  + +       L  L+ L + +N L       L    +L  LD
Sbjct: 480 SHLQVLYLNH-----NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532

Query: 168 VSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFL 227
           +S NQL        + L   +   N  I E    T  N+   +    +G    +      
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD 592

Query: 228 HHQNK-LEDVDLSHI 241
                 L  +     
Sbjct: 593 SFSGVSLFSLSTEGC 607

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (386), Expect = 3e-39
 Identities = 99/594 (16%), Positives = 196/594 (32%), Gaps = 90/594 (15%)

Query: 33  NLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTA 92
            +  +T     L  +  +   ++  S K+L +    +   + S  F  F  L+ LD++  
Sbjct: 6   VVPNITYQCMEL--NFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 62

Query: 93  CI-ALNASFLQIIGASMPFLKYLSLSYFTFGTNS-SRILDQGLCPLVHLQELHMANNDLR 150
            I  +     Q    S+  L  L L+      N    +       L  LQ+L     +L 
Sbjct: 63  EIQTIEDGAYQ----SLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 151 GSLPWCLANMTSLRTLDVSSNQLTGSISSSPL-------ILDAYNNEINAEITESHSLTA 203
               + + ++ +L+ L+V+ N +                 LD  +N+I   I  +     
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVL 172

Query: 204 PNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSL 263
               L +LSL                + +L  + L +   +       ++    LE   L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 264 VNDSLAGPFRLPIHS--------HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315
           V         L            + ++    ++  ++      ++ + L ++SSF++   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 316 ALDGSIPSSF-GNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKN 374
            ++     S+      L++++               +   +L+ L  ++N          
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFP-------TLKLKSLKRLTFTSNKG--GNAFSE 343

Query: 375 FNLTKLSWLLLEDN--HFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYII 432
            +L  L +L L  N   F     QS     SL+ L L+ N +   +      L  L+++ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402

Query: 433 IPENHLEG-PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSH 491
              ++L+       F  L +L  L              +S+     +     +GL  L  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYL-------------DISHTHTRVAFNGIFNGLSSLEV 449

Query: 492 LILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDL 550
           L +A N+ +          L  L  LDLS  +L  L P  F++                 
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----------------- 492

Query: 551 SCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
                          L+ +Q LN++ N L       F  L  ++ + L+ N  +
Sbjct: 493 ---------------LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (370), Expect = 3e-37
 Identities = 95/546 (17%), Positives = 181/546 (33%), Gaps = 96/546 (17%)

Query: 111 LKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSS 170
            K L LS+         +          LQ L ++  +++        +++ L TL ++ 
Sbjct: 30  TKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 171 NQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQ 230
           N +  S++                        +    L+ L                   
Sbjct: 86  NPIQ-SLALGAF--------------------SGLSSLQKLVAVE--------------- 109

Query: 231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLA-GPFRLPIHSHKSLRLLDVSN 289
             L  +            N+ + +   L+ L++ ++ +          +  +L  LD+S+
Sbjct: 110 TNLASL-----------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 290 NNFQGRIPAEIGDILPSLSSF----NISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEI 345
           N  Q  I      +L  +       ++S+N ++   P +F  +  L  L L NN  +  +
Sbjct: 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNV 216

Query: 346 PEHLAIGCVNLEILVLSNNNLEGH---------MFSKNFNLTKLSWLLLEDNHFVEEIPQ 396
            +    G   LE+  L                       NLT   + L   ++++++I  
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 397 SLSKCLSLEGLHLNNNNLSGKIP-QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455
             +   ++    L +  +       +      L+ +                +L SL+ L
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------TLKLKSLKRL 330

Query: 456 GISDNNISG-----SLPS----YLSYNRLN--GSIPDRIDGLLRLSHLILAHNNLEGEVP 504
             + N          LPS     LS N L+  G       G   L +L L+ N +   + 
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPC-FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI 563
               GL QL+ LD   + L  +     F +        L  L  +D+S            
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLS--------LRNLIYLDISHTHTRVAFNGIF 441

Query: 564 GNLTRIQTLNLSHNNLTGTILS-TFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
             L+ ++ L ++ N+     L   FT LR++  LDL   +L    P     L++L V ++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 623 AYNNLS 628
           A N L 
Sbjct: 502 ASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (344), Expect = 7e-34
 Identities = 93/516 (18%), Positives = 164/516 (31%), Gaps = 86/516 (16%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
             + L ++ N LR    +   +   L+ LD+S  ++  +I                    
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAY--------------- 72

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
             SL+     L +L L+                N ++                     + 
Sbjct: 73  -QSLS----HLSTLILTG---------------NPIQ-----------SLALGAFSGLSS 101

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
           L+ L  V  +LA     PI   K+L+ L+V++N  Q     E    L +L   ++S N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 318 DGSIPSSFGNMNFLQI----LDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSK 373
                +    ++ + +    LDLS N +   I    A   + L  L L NN    ++   
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 374 NF-NLTKLSWLLLEDNHF-----VEEIPQSLSK---CLSLEGLHLNNNNLSG-KIPQWLG 423
               L  L    L    F     +E+  +S  +    L++E   L   +     I     
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 424 NLTGLQYIIIPENHLEGPIPVAF-CQLDSLQILGISDNNISGSLPS-----YLSYNRLNG 477
            LT +    +    +E     ++      L+++                    + N+   
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 478 SIPDRIDGLLRLSHLILAHNNLE--GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTA 535
           +  +    L  L  L L+ N L   G       G   L+ LDLS N +   +   F    
Sbjct: 340 AFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG-- 394

Query: 536 LHERRVLSLLSGIDLSCNKLIGDIPPQI--GNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593
                 L  L  +D   + L   +       +L  +  L++SH +        F  L  +
Sbjct: 395 ------LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 594 ESLDLYHNKLNGKI-PCQLVELNALVVFSVAYNNLS 628
           E L +  N       P    EL  L    ++   L 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (269), Expect = 2e-24
 Identities = 60/308 (19%), Positives = 103/308 (33%), Gaps = 39/308 (12%)

Query: 335 DLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI 394
                +   +IP++L     + + L LS N L        F+  +L  L L         
Sbjct: 13  QCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 395 PQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI 454
             +      L  L L  N +          L+ LQ ++  E +L          L +L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQ 514
           L ++ N I             +  +P+    L  L HL L+ N ++      L  L+Q+ 
Sbjct: 129 LNVAHNLIQ------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 515 L----LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ-IGNLTRI 569
           L    LDLS N ++ + P  F    LH+         + L  N    ++    I  L  +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHK---------LTLRNNFDSLNVMKTCIQGLAGL 227

Query: 570 QTLNL------SHNNLTGTILSTFTNLRHIESLDLYHNKLNG---KIPCQLVELNALVVF 620
           +   L      +  NL     S    L ++   +     L+     I      L  +  F
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 621 SVAYNNLS 628
           S+    + 
Sbjct: 288 SLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (269), Expect = 2e-24
 Identities = 67/418 (16%), Positives = 129/418 (30%), Gaps = 34/418 (8%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
             + ++L  L L  N +  I  T  + LH    L  L+LD S   ++ +Q  A     L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN-LSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYF- 119
            L++ +   +  V          LE   +         +  +   +++  L  L++  F 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 120 -TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPW-CLANMTSLRTLDVSSNQLTGSI 177
             +       +      L ++    + +  +     +        L  ++    Q     
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 178 SSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVD 237
             S   L   +N+     +E          L+ L LS                N L    
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSR---------------NGLSFKG 363

Query: 238 LSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
                      +      T L+ L L  + +           + L  LD  ++N +    
Sbjct: 364 C---------CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
             +   L +L   +IS      +    F  ++ L++L ++ N         +     NL 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 358 ILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
            L LS   LE    +   +L+ L  L +  N           +  SL+ + L+ N   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (382), Expect = 6e-39
 Identities = 87/523 (16%), Positives = 172/523 (32%), Gaps = 65/523 (12%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
             +K L LS+       + I    L    +LQ L + ++ +         ++ SL  LD+
Sbjct: 26  AAMKSLDLSF----NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 169 SSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLH 228
           S N L+ S+SSS                    L+     LK L+L       +       
Sbjct: 82  SDNHLS-SLSSSWF----------------GPLS----SLKYLNLMGNPYQTLGVTSLFP 120

Query: 229 HQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVS 288
           +   L+ + + +++   E         T L  L +   SL       + S + +  L + 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 289 NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEH 348
            +     +     DIL S+    +    L     S          +       +  + + 
Sbjct: 181 LSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDE 238

Query: 349 LAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLH 408
                + L   +L  + +E      +  L  L      ++  V E+ +   + +++  LH
Sbjct: 239 SFNELLKLLRYILELSEVE----FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLH 292

Query: 409 LNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS----- 463
           +    L   +      L  ++ I +  + +          L SL+ L +S+N +      
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 464 -----GSLPS----YLSYNRLN--GSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQ 512
                G+ PS     LS N L       + +  L  L+ L ++ N     +P       +
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 513 LQLLDLSDNKLHGLIPPCFDN-----------TALHERRVLSLLSGIDLSCNKLIGDIPP 561
           ++ L+LS   +  +                   +      L  L  + +S NKL   +P 
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKLK-TLPD 468

Query: 562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
                  +  + +S N L       F  L  ++ + L+ N  +
Sbjct: 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (348), Expect = 2e-34
 Identities = 61/361 (16%), Positives = 136/361 (37%), Gaps = 10/361 (2%)

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
            +P     +++ LD+S N     I         +L    +  + ++     +F ++  L+
Sbjct: 19  SIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNHFV 391
            LDLS+NHL+  +         +L+ L L  N  +    +  F NLT L  L + +    
Sbjct: 78  HLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 392 EEIP-QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLD 450
            EI     +   SL  L +   +L     Q L ++  + ++ +  +     + +    L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 451 SLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGL 510
           S++ L + D N++    S L  + ++  +         L+           ++   +  L
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL---KLLRYILEL 253

Query: 511 NQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ 570
           ++++  D + N L    P   D  +   +     +  + +    L  D+      L +++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 571 TLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALV---VFSVAYNNL 627
            + + ++ +     S   +L+ +E LDL  N +  +         A        ++ N+L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 628 S 628
            
Sbjct: 374 R 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 60/419 (14%), Positives = 125/419 (29%), Gaps = 84/419 (20%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFP---- 57
            S   ++ L L  +    ++      L +   LE    + +    S L       P    
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 58  SLKSLSMIDCKVNGVVRS-QGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSL 116
           + +   + D   N +++  +       +E+ D     +         + + +  ++ +++
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 117 SYFTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG 175
                        L      L  ++ + + N+ +         ++ SL  LD+S N +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 176 SISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLED 235
               +     A+ +                  L++L LS               QN L  
Sbjct: 349 EYLKNSACKGAWPS------------------LQTLVLS---------------QNHL-- 373

Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGR 295
                                 ++    +  +L           K+L  LD+S N F   
Sbjct: 374 --------------------RSMQKTGEILLTL-----------KNLTSLDISRNTFH-P 401

Query: 296 IPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVN 355
           +P         +   N+S   +   + +       L++LD+SNN+L       L      
Sbjct: 402 MPDSC-QWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFL----PR 452

Query: 356 LEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNL 414
           L+ L +S N L             L  + +  N           +  SL+ + L+ N  
Sbjct: 453 LQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 20/215 (9%)

Query: 447 CQLDSLQILGISDNNISGSLPS---------YLSYNRLNGSIPDRIDGLLRLSHLILAHN 497
              D+  +      + + S+PS          LS+N++       +     L  LIL  +
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 498 NLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
            +          L  L+ LDLSDN L  L    F          LS L  ++L  N    
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP--------LSSLKYLNLMGNPYQT 112

Query: 558 DIPPQ-IGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNGKIPCQLVELN 615
                   NLT +QTL + +      I    F  L  +  L++    L       L  + 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 616 ALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNP 650
            +   ++  +  +  +       ++      +   
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (366), Expect = 3e-38
 Identities = 80/377 (21%), Positives = 142/377 (37%), Gaps = 48/377 (12%)

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN 311
             +  +     L   S+     +     +S+  L V+          E    L +L   N
Sbjct: 18  DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASIQGIEY---LTNLEYLN 72

Query: 312 ISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMF 371
           ++ N +    P    N+  L  L +  N +T      L     NL  L L+ +N+     
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQ-NLTNLRELYLNEDNISD--I 125

Query: 372 SKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYI 431
           S   NLTK+  L L  NH + ++   LS    L  L +  + +    P  + NLT L  +
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 432 IIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSH 491
            +  N +E   P     L SL       N I+   P               +  + RL+ 
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---------------VANMTRLNS 225

Query: 492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
           L + +N +    P  L  L+QL  L++  N++  +      +        L+ L  +++ 
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD--------LTKLKMLNVG 273

Query: 552 CNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL 611
            N+ I DI   + NL+++ +L L++N L    +     L ++ +L L  N +    P  L
Sbjct: 274 SNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329

Query: 612 VELNALVVFSVAYNNLS 628
             L+ +     A   + 
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 1e-37
 Identities = 75/351 (21%), Positives = 143/351 (40%), Gaps = 44/351 (12%)

Query: 296 IPAEIGDI-----LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA 350
           +PA I  I     L       +   ++   +      +  +  L ++   +     + + 
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIE 63

Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
               NLE L L+ N +     S   NL KL+ L +  N        +L    +L  L+LN
Sbjct: 64  -YLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS-----GS 465
            +N+S   P  L NLT +  + +  NH    +      +  L  L ++++ +       +
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIAN 175

Query: 466 LPS----YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN 521
           L       L+YN++    P  +  L  L +     N +    P  +  + +L  L + +N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 522 KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTG 581
           K+  L P    N        LS L+ +++  N+ I DI   + +LT+++ LN+  N ++ 
Sbjct: 232 KITDLSP--LAN--------LSQLTWLEIGTNQ-ISDINA-VKDLTKLKMLNVGSNQISD 279

Query: 582 TILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
             +S   NL  + SL L +N+L  +    +  L  L    ++ N+++   P
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 4e-25
 Identities = 78/414 (18%), Positives = 155/414 (37%), Gaps = 74/414 (17%)

Query: 7   LNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMID 66
             TL  +   + +I         +        L      ++ + +       L+S++ + 
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVL--QKASVTDVVTQEE----LESITKLV 50

Query: 67  CKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSS 126
                V   QG  +  +LEYL++N   I    + +  +  ++  L  L +       N  
Sbjct: 51  VAGEKVASIQGIEYLTNLEYLNLNGNQI----TDISPLS-NLVKLTNLYIGT-----NKI 100

Query: 127 RILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS-SPLI-- 183
             +   L  L +L+EL++  +++    P  LAN+T + +L++ +N     +S  S +   
Sbjct: 101 TDIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGL 157

Query: 184 --LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHI 241
             L    +++  ++T   +LT     L SLSL+                N++ED+     
Sbjct: 158 NYLTVTESKVK-DVTPIANLT----DLYSLSLNY---------------NQIEDIS---- 193

Query: 242 KMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIG 301
                     L + T L   +   + +      P+ +   L  L + NN      P  + 
Sbjct: 194 ---------PLASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LA 240

Query: 302 DILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVL 361
           + L  L+   I  N +  S  ++  ++  L++L++ +N ++      L      L  L L
Sbjct: 241 N-LSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLN-NLSQLNSLFL 294

Query: 362 SNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
           +NN L          LT L+ L L  NH  +  P  L+    ++     N  + 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (257), Expect = 9e-24
 Identities = 72/370 (19%), Positives = 141/370 (38%), Gaps = 68/370 (18%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
               S+  L +    +  I     Q +   TNLEY  L+ +   I+ +  ++    +L  
Sbjct: 41  EELESITKLVVAGEKVASI-----QGIEYLTNLEY--LNLNGNQITDISPLS----NLVK 89

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L+ +    N +       +  +L  L +N   I+  +       A++  +  L+L     
Sbjct: 90  LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPL-----ANLTKMYSLNLGA--- 141

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
             N +      L  +  L  L +  + ++   P  +AN+T L +L ++ NQ+      + 
Sbjct: 142 --NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLAS 197

Query: 182 L----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVD 237
           L       AY N+I  +IT   ++T    +L SL + +               NK+ D+ 
Sbjct: 198 LTSLHYFTAYVNQIT-DITPVANMT----RLNSLKIGN---------------NKITDLS 237

Query: 238 LSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
                         L N ++L  L +  + ++      +     L++L+V +N       
Sbjct: 238 -------------PLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISD--I 280

Query: 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
           + + + L  L+S  ++ N L        G +  L  L LS NH+T   P  LA     ++
Sbjct: 281 SVLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA-SLSKMD 336

Query: 358 ILVLSNNNLE 367
               +N  ++
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 509 GLNQLQLLDLS------DNKLHGLIPPCFDNTALHERRVLSLLSGI---DLSCNKLIGDI 559
           G   L  L         D  L   I       ++ +      L  I    ++  K +  I
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEK-VASI 59

Query: 560 PPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVV 619
              I  LT ++ LNL+ N +T   +S  +NL  + +L +  NK+       L  L  L  
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 620 FSVAYNNLSGKIP 632
             +  +N+S   P
Sbjct: 115 LYLNEDNISDISP 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (369), Expect = 1e-37
 Identities = 111/499 (22%), Positives = 192/499 (38%), Gaps = 66/499 (13%)

Query: 157 LANMTSLRTLDVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNFQLKSLS 212
              +       +    +T ++S + L     L A    I   I     L      L  ++
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDGVEYLN----NLTQIN 74

Query: 213 LSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPF 272
            S+     +T    L +  KL D+ +++ ++    P   L N T L  L+L N+ +    
Sbjct: 75  FSNN---QLTDITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDID 128

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
             P+ +  +L  L++S+N     I A  G  L SL   +      D        N+  L+
Sbjct: 129 --PLKNLTNLNRLELSSNTISD-ISALSG--LTSLQQLSFGNQVTD---LKPLANLTTLE 180

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE 392
            LD+S+N ++      LA    NLE L+ +NN +     +    LT L  L L  N  ++
Sbjct: 181 RLDISSNKVSD--ISVLA-KLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ-LK 234

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
           +I  +L+   +L  L L NN +S   P  L  LT L  + +  N +    P     L +L
Sbjct: 235 DIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289

Query: 453 QILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQ 512
             L +++N +    P               I  L  L++L L  NN+    P  +  L +
Sbjct: 290 TNLELNENQLEDISP---------------ISNLKNLTYLTLYFNNISDISP--VSSLTK 332

Query: 513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTL 572
           LQ L   +NK+  +      N        L+ ++ +    N+ I D+ P + NLTRI  L
Sbjct: 333 LQRLFFYNNKVSDVSS--LAN--------LTNINWLSAGHNQ-ISDLTP-LANLTRITQL 380

Query: 573 NLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
            L+    T   ++   N+    ++      L    P  + +  +     + +N  S    
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTN 437

Query: 633 EMTTQFATFNESNYKGNPF 651
           E++  F+           F
Sbjct: 438 EVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (329), Expect = 2e-32
 Identities = 114/547 (20%), Positives = 182/547 (33%), Gaps = 120/547 (21%)

Query: 42  SSLHISLLQSIASIFP--SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNAS 99
            S  I+    I  IF   +L            V  +        +  L         +  
Sbjct: 4   GSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQ-------ADRL 56

Query: 100 FLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLAN 159
            ++ I                           G+  L +L +++ +NN L    P  L N
Sbjct: 57  GIKSI--------------------------DGVEYLNNLTQINFSNNQLTDITP--LKN 88

Query: 160 MTSLRTLDVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSS 215
           +T L  + +++NQ+      + L     L  +NN+I  +I    +LT     L  L LSS
Sbjct: 89  LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT-DIDPLKNLT----NLNRLELSS 143

Query: 216 GYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLP 275
                          N + D+               L   T L+ LS  N         P
Sbjct: 144 ---------------NTISDIS-------------ALSGLTSLQQLSFGNQVTDLK---P 172

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
           + +  +L  LD+S+N       + +   L +L S   + N +    P   G +  L  L 
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP 395
           L+ N L       LA    NL  L L+NN +     +    LTKL+ L L  N      P
Sbjct: 228 LNGNQLKD--IGTLA-SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 282

Query: 396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455
             L+   +L  L LN N L    P  + NL  L Y+ +  N++    P     L  LQ L
Sbjct: 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQL 515
              +N +S                   +  L  ++ L   HN +    P  L  L ++  
Sbjct: 337 FFYNNKVSD---------------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLS 575
           L L+D            N        +S+ + +      LI   P  I +       +++
Sbjct: 380 LGLNDQAWTNAPVNYKAN--------VSIPNTVKNVTGALI--APATISDGGSYTEPDIT 429

Query: 576 HNNLTGT 582
            N  + T
Sbjct: 430 WNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (298), Expect = 2e-28
 Identities = 70/336 (20%), Positives = 125/336 (37%), Gaps = 42/336 (12%)

Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN 365
            L S  I+ +     I  +   +       L   ++T  + +        +  L      
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLG 57

Query: 366 LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL 425
           ++         L  L+ +   +N   +  P  L     L  + +NNN ++   P  L NL
Sbjct: 58  IKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS-----GSLPS----YLSYNRLN 476
           T L  + +  N +    P     L +L  L +S N IS       L S        N++ 
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVT 168

Query: 477 GSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTAL 536
              P  +  L  L  L ++ N +       L  L  L+ L  ++N++  + P        
Sbjct: 169 DLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGI--- 219

Query: 537 HERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESL 596
                L+ L  + L+ N+L  DI   + +LT +  L+L++N ++   L+  + L  +  L
Sbjct: 220 -----LTNLDELSLNGNQLK-DIGT-LASLTNLTDLDLANNQISN--LAPLSGLTKLTEL 270

Query: 597 DLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
            L  N+++   P  L  L AL    +  N L    P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (287), Expect = 4e-27
 Identities = 100/535 (18%), Positives = 178/535 (33%), Gaps = 104/535 (19%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
           + +      L   N+T+ V+       +   +    L    L I  +  +     +L  +
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS-----QTDLDQVTT--LQADRLGIKSIDGVEY-LNNLTQI 73

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFG 122
           +  + ++  +       +   L  + M         +  QI   +               
Sbjct: 74  NFSNNQLTDI---TPLKNLTKLVDILM---------NNNQIADIT--------------- 106

Query: 123 TNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
                     L  L +L  L + NN +    P  L N+T+L  L++SSN ++   + S L
Sbjct: 107 ---------PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL 155

Query: 183 ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIK 242
                                    L+ LS      + VT  K L +   LE +D+S  K
Sbjct: 156 T-----------------------SLQQLSFG----NQVTDLKPLANLTTLERLDISSNK 188

Query: 243 MNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGD 302
           ++       L   T LESL   N+ ++     P+    +L  L ++ N  +      +  
Sbjct: 189 VSDISV---LAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD--IGTLAS 241

Query: 303 ILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS 362
            L +L+  +++ N +    P     +  L  L L  N ++   P     G   L  L L+
Sbjct: 242 -LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA---GLTALTNLELN 295

Query: 363 NNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWL 422
            N LE    S   NL  L++L L  N+  +  P  +S    L+ L   NN +S      L
Sbjct: 296 ENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSL 349

Query: 423 GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY--------LSYNR 474
            NLT + ++    N +    P     L  +  LG++D   + +  +Y           N 
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

Query: 475 LNGSI-PDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP 528
               I P  I      +   +  N             +Q   +        G + 
Sbjct: 408 TGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  112 bits (283), Expect = 1e-26
 Identities = 97/466 (20%), Positives = 163/466 (34%), Gaps = 78/466 (16%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
                + TL      +  I       +    NL  +    + L      +  +   +L  
Sbjct: 43  TDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQL------TDITPLKNLTK 91

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L  I    N +       +  +L  L +    I    + +  +  ++  L  L LS    
Sbjct: 92  LVDILMNNNQIADITPLANLTNLTGLTLFNNQI----TDIDPLK-NLTNLNRLELSS--- 143

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
             N+   +   L  L  LQ+L   N  +    P  LAN+T+L  LD+SSN+++     + 
Sbjct: 144 --NTISDIS-ALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSDISVLAK 197

Query: 182 L----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVD 237
           L     L A NN+I+ +IT    LT     L  LSL+                N+L+D+ 
Sbjct: 198 LTNLESLIATNNQIS-DITPLGILT----NLDELSLNG---------------NQLKDIG 237

Query: 238 LSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
                         L + T L  L L N+ ++     P+     L  L +  N      P
Sbjct: 238 -------------TLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP 282

Query: 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
             +   L +L++  ++ N L+   P    N+  L  L L  N+++   P         L+
Sbjct: 283 --LAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS---SLTKLQ 334

Query: 358 ILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK 417
            L   NN +     S   NLT ++WL    N   +  P  L+    +  L LN+   +  
Sbjct: 335 RLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390

Query: 418 IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463
              +  N++    +      L  P         S     I+ N  S
Sbjct: 391 PVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 71/365 (19%), Positives = 134/365 (36%), Gaps = 54/365 (14%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASI------ 55
            + ++LN L L  N +++I       L   T+L+ L+       +  L ++ ++      
Sbjct: 131 KNLTNLNRLELSSNTISDI-----SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185

Query: 56  ---------FPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGA 106
                       L +L  +    N +          +L+ L +N   +    +      A
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-----A 240

Query: 107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL 166
           S+  L  L L+        S +    L  L  L EL +  N +    P  LA +T+L  L
Sbjct: 241 SLTNLTDLDLAN----NQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 167 DVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT 222
           +++ NQL      S L     L  Y N I+ +I+   SLT    +L+ L   +   + V+
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNIS-DISPVSSLT----KLQRLFFYN---NKVS 344

Query: 223 FPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL 282
               L +   +  +   H +++   P   L N T++  L L + +       P++   ++
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN---APVNYKANV 398

Query: 283 RLLDVSNNNFQGRI-PAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL 341
            + +   N     I PA I D   S +  +I+ N L           +    +       
Sbjct: 399 SIPNTVKNVTGALIAPATISD-GGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTTTF 456

Query: 342 TGEIP 346
           +G + 
Sbjct: 457 SGTVT 461

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  144 bits (365), Expect = 4e-37
 Identities = 83/336 (24%), Positives = 135/336 (40%), Gaps = 31/336 (9%)

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
            +P       RLLD+  N  +  +  +     P L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNH 389
            L L +N L   IP  +  G  NL  L +S N +     +MF    +L  L  L + DN 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 390 FVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL 449
            V    ++ S   SLE L L   NL+    + L +L GL  + +   ++      +F +L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 450 DSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCG 509
             L++L IS      ++     Y              L L+ L + H NL     + +  
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYG-------------LNLTSLSITHCNLTAVPYLAVRH 246

Query: 510 LNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTR 568
           L  L+ L+LS N +  +               L  L  I L   + +  + P     L  
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHE--------LLRLQEIQLVGGQ-LAVVEPYAFRGLNY 297

Query: 569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
           ++ LN+S N LT    S F ++ ++E+L L  N L 
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 2e-22
 Identities = 70/391 (17%), Positives = 129/391 (32%), Gaps = 90/391 (23%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
              + L L           +         HL+EL +  N +    P    N+ +LRTL +
Sbjct: 32  TETRLLDLG----KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 169 SSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLH 228
            SN+L                 I   +     L+     L  L +S              
Sbjct: 88  RSNRLK---------------LIPLGVF--TGLS----NLTKLDISE------------- 113

Query: 229 HQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVS 288
             NK+  +            +++ ++   L+SL + ++                 L+ +S
Sbjct: 114 --NKIVIL-----------LDYMFQDLYNLKSLEVGDN----------------DLVYIS 144

Query: 289 NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEH 348
           +  F G         L SL    +    L      +  +++ L +L L + ++   I ++
Sbjct: 145 HRAFSG---------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDY 194

Query: 349 LAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLH 408
                  L++L +S+      M         L+ L +   +       ++   + L  L+
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 409 LNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS 468
           L+ N +S      L  L  LQ I +    L    P AF  L+ L++L +S N ++ +L  
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE- 312

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
                            +  L  LIL  N L
Sbjct: 313 -----------ESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 48/243 (19%), Positives = 89/243 (36%), Gaps = 28/243 (11%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
            +P+ +        L L  N +         +   L+ + + EN +    P AF  L +L
Sbjct: 25  AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 453 QILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLN 511
           + LG+  N +                IP  +  GL  L+ L ++ N +   +      L 
Sbjct: 83  RTLGLRSNRLK--------------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQ 570
            L+ L++ DN L  +    F          L+ L  + L     +  IP +   +L  + 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSG--------LNSLEQLTLEKCN-LTSIPTEALSHLHGLI 179

Query: 571 TLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630
            L L H N+      +F  L  ++ L++ H      +    +    L   S+ + NL+  
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-A 238

Query: 631 IPE 633
           +P 
Sbjct: 239 VPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 72/368 (19%), Positives = 129/368 (35%), Gaps = 71/368 (19%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            +    L L  N +  +      E  +F +LE L L+ +   +S ++  A  F +L +L 
Sbjct: 31  PTETRLLDLGKNRIKTL---NQDEFASFPHLEELELNEN--IVSAVEPGA--FNNLFNLR 83

Query: 64  MIDCKVNG--VVRSQGFPHFKSLEYLDMNTACIA--LNASFLQIIGASMPFLKYLSLSYF 119
            +  + N   ++    F    +L  LD++   I   L+  F       +  LK L +   
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-----QDLYNLKSLEVGD- 137

Query: 120 TFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSIS 178
               N    I  +    L  L++L +   +L       L+++  L  L +    +  +I 
Sbjct: 138 ----NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIR 192

Query: 179 SSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDL 238
                                      ++LK L +S         P  L+  N L  + +
Sbjct: 193 DYSF--------------------KRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSI 231

Query: 239 SHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPA 298
           +H                 L ++           R        LR L++S N     I  
Sbjct: 232 TH---------------CNLTAVP------YLAVR----HLVYLRFLNLSYNPIS-TIEG 265

Query: 299 EIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358
            +   L  L    +    L    P +F  +N+L++L++S N LT  + E +     NLE 
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 359 LVLSNNNL 366
           L+L +N L
Sbjct: 325 LILDSNPL 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  141 bits (358), Expect = 8e-37
 Identities = 70/365 (19%), Positives = 143/365 (39%), Gaps = 41/365 (11%)

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN 311
           L+ +     + +   +    F     +  + +++   N+  + ++PA + D    +   N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 312 ISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE---G 368
           ++   ++     +F   + +Q L +  N +   +P H+      L +LVL  N+L     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGL 428
            +F    N  KL+ L + +N+       +     SL+ L L++N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 429 QYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS---------YLSYNRLNGSI 479
            +  +  N L            +++ L  S N+I+  +            L +N L    
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLT-DT 241

Query: 480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHER 539
              +     L  + L++N LE  +      + +L+ L +S+N+L   +            
Sbjct: 242 AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP------ 293

Query: 540 RVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLY 599
             +  L  +DLS N  +  +        R++ L L HN++    LST   L++   L L 
Sbjct: 294 --IPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLS 347

Query: 600 HNKLN 604
           HN  +
Sbjct: 348 HNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 6e-30
 Identities = 61/328 (18%), Positives = 116/328 (35%), Gaps = 42/328 (12%)

Query: 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
                  +I M   D         +N  +I+   N+ +  ++P  L      +E+L L++
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 78

Query: 364 NNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQ 420
             +   + + F+       +  L +  N      P        L  L L  N+LS     
Sbjct: 79  LQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 421 WLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP 480
              N   L  + +  N+LE      F    SLQ L +S N ++               + 
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT--------------HVD 181

Query: 481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERR 540
                +  L H  +++N L       L     ++ LD S N ++ +  P           
Sbjct: 182 L--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE------- 227

Query: 541 VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600
               L+ + L  N L       + N   +  ++LS+N L   +   F  ++ +E L + +
Sbjct: 228 ----LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 601 NKLNGKIPCQLVELNALVVFSVAYNNLS 628
           N+L   +      +  L V  +++N+L 
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (290), Expect = 7e-28
 Identities = 72/486 (14%), Positives = 148/486 (30%), Gaps = 116/486 (23%)

Query: 129 LDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYN 188
           +D  L       ++H+          +    + + + +   ++ +   + ++ L      
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL------ 65

Query: 189 NEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFP 248
                      S      Q++ L+L+                 ++E++            
Sbjct: 66  ----------DSFR----QVELLNLND---------------LQIEEI-----------D 85

Query: 249 NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLS 308
            +       ++ L +                           N    +P  +   +P L+
Sbjct: 86  TYAFAYAHTIQKLYM-------------------------GFNAIRYLPPHVFQNVPLLT 120

Query: 309 SFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
              +  N L       F N   L  L +SNN+L   I +       +L+ L LS+N L  
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGL 428
              S    +  L    +  N        +L+  +++E L  ++N+++  +         L
Sbjct: 180 VDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVEL 228

Query: 429 QYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLL 487
             + +  N+L             L  + +S N +                I       + 
Sbjct: 229 TILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE--------------KIMYHPFVKMQ 272

Query: 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG 547
           RL  L +++N L   + +    +  L++LDLS N L  +         L           
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN--------- 322

Query: 548 IDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKI 607
           + L  N  I  +         ++ L LSHN+     L      R++    +     + KI
Sbjct: 323 LYLDHNS-IVTLKL--STHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKI 377

Query: 608 PCQLVE 613
             QL  
Sbjct: 378 DYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 78/415 (18%), Positives = 143/415 (34%), Gaps = 82/415 (19%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELH--NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
           +        D ++                 N + +T   S++   L  ++   F  ++ L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMNTACI-ALNASFLQIIGASMPFLKYLSLSYFTF 121
           ++ D ++   + +  F +  +++ L M    I  L     Q    ++P L  L L     
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLER--- 126

Query: 122 GTNSSRILDQGL-CPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
             N    L +G+      L  L M+NN+L           TSL+ L +SSN+LT  +  S
Sbjct: 127 --NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS 183

Query: 181 PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSH 240
            +                         L   ++S                N L       
Sbjct: 184 LIP-----------------------SLFHANVSY---------------NLLST----- 200

Query: 241 IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEI 300
                      L     +E L   ++S+     +    +  L +L + +NN        +
Sbjct: 201 -----------LAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DTAWLL 245

Query: 301 GDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360
               P L   ++S N L+  +   F  M  L+ L +SNN L   +  +       L++L 
Sbjct: 246 N--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLD 301

Query: 361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
           LS+N+L  H+        +L  L L+ N  V     +     +L+ L L++N+  
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 26/212 (12%)

Query: 418 IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG 477
           I   L        + I     +         L++ +I+   ++ +   LP          
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP---------- 61

Query: 478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537
                +D   ++  L L    +E          + +Q L +  N +  L P  F N    
Sbjct: 62  --AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN---- 115

Query: 538 ERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESL 596
               + LL+ + L  N  +  +P  I  N  ++ TL++S+NNL      TF     +++L
Sbjct: 116 ----VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 597 DLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
            L  N+L   +   L  + +L   +V+YN LS
Sbjct: 171 QLSSNRLT-HVDLSL--IPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 80/390 (20%), Positives = 131/390 (33%), Gaps = 87/390 (22%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
            SF  +  L L D  + EI T           ++ L + F+   I  L     +F ++  
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYA---FAYAHTIQKLYMGFN--AIRYLP--PHVFQNVPL 118

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L+++  + N             L  L                I  + P L  LS+S    
Sbjct: 119 LTVLVLERN------------DLSSLPRG-------------IFHNTPKLTTLSMSN--- 150

Query: 122 GTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG-SISS 179
             N+  RI D        LQ L +++N L   +   L+ + SL   +VS N L+  +I  
Sbjct: 151 --NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPI 205

Query: 180 SPLILDAYNNEINAEITESHSLTAPNFQ-LKSLSLSSGYEDGVTFPKFLHHQNKLEDVDL 238
           +   LDA +N IN        +  P    L  L L                 N L D   
Sbjct: 206 AVEELDASHNSIN-------VVRGPVNVELTILKLQH---------------NNLTDTA- 242

Query: 239 SHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPA 298
                        L N   L  + L  + L      P    + L  L +SNN     +  
Sbjct: 243 ------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 299 EIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358
                +P+L   ++S N L   +  +    + L+ L L +N +   +          L+ 
Sbjct: 290 YGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST---HHTLKN 343

Query: 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDN 388
           L LS+N+      S       ++   ++D 
Sbjct: 344 LTLSHNDW--DCNSLRALFRNVARPAVDDA 371

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (350), Expect = 3e-36
 Identities = 58/358 (16%), Positives = 109/358 (30%), Gaps = 47/358 (13%)

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
            H       L    +         +        + + +             N N  QI  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP 395
            +   L                 L L +  L                          + P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-------------------------QFP 97

Query: 396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455
               +   L+ + ++   L  ++P  +    GL+ + +  N L   +P +   L+ L+ L
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLREL 155

Query: 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQL 515
            I        LP  L+    +        GL+ L  L L    +   +P  +  L  L+ 
Sbjct: 156 SIRACPELTELPEPLA----STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLS 575
           L + ++ L  L  P   +        L  L  +DL     + + PP  G    ++ L L 
Sbjct: 211 LKIRNSPLSAL-GPAIHH--------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 576 HNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPE 633
             +   T+      L  +E LDL       ++P  + +L A  +  V   +L  ++ +
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 1e-23
 Identities = 54/335 (16%), Positives = 104/335 (31%), Gaps = 31/335 (9%)

Query: 151 GSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKS 210
           GS      + +    L    +               + N        +      N     
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ--ANSNNPQ 59

Query: 211 LSLSSGYEDGVTFPKFLHH--QNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL 268
           +   +G          L    Q     ++L  + +  +FP+      + L+ +++    L
Sbjct: 60  IETRTGRAL-KATADLLEDATQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGL 116

Query: 269 AGPFRLP--IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFG 326
                LP  +     L  L ++ N  +  +PA I   L  L   +I        +P    
Sbjct: 117 M---ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLA 171

Query: 327 NMNF---------LQILDLSNNHLTGEIPEHLAIG-CVNLEILVLSNNNLEGHMFSKNF- 375
           + +          LQ L L    +   +P   +I    NL+ L + N+ L          
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPA--SIANLQNLKSLKIRNSPLSA--LGPAIH 226

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
           +L KL  L L     +   P        L+ L L + +    +P  +  LT L+ + +  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
                 +P    QL +  I+ +   ++   L  + 
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 3e-22
 Identities = 64/419 (15%), Positives = 116/419 (27%), Gaps = 105/419 (25%)

Query: 21  VTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPH 80
           + ++    H+ +  E L    S+     L+    +    +     D   N    +    +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTA----LRPYHDVLSQWQRHYNADR--NRWHSAWRQAN 54

Query: 81  FKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQ 140
             + +         AL A+   +  A+ P    L L                   L HLQ
Sbjct: 55  SNNPQIETRT--GRALKATADLLEDATQPGRVALELRS-----VPLPQFPDQAFRLSHLQ 107

Query: 141 ELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHS 200
            + +    L   LP  +     L TL ++ N L                           
Sbjct: 108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-------------------------- 140

Query: 201 LTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLES 260
                                  P  +   N+L ++ +       E P  L   +   E 
Sbjct: 141 ---------------------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 261 LSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS 320
             LVN                L+ L +     +  +PA I + L +L S  I  + L  +
Sbjct: 180 QGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-A 220

Query: 321 IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKL 380
           +  +  ++  L+ LDL         P                                 L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFG-------------------------GRAPL 255

Query: 381 SWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE 439
             L+L+D   +  +P  + +   LE L L       ++P  +  L     I++P +   
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 40/272 (14%), Positives = 72/272 (26%), Gaps = 38/272 (13%)

Query: 395 PQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP----------- 443
                     E L+   +         L              H                 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 444 ----------VAFCQLDSLQILGISDNNISGSLPS-----------YLSYNRLNGSIPDR 482
                     +          L +    +    P             +    L   +PD 
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDN-TALHERRV 541
           +     L  L LA N L   +P  +  LN+L+ L +        +P    +  A  E + 
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
           L  L  + L    +   +P  I NL  +++L + ++ L+  +     +L  +E LDL   
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

Query: 602 KLNGKIPCQLVELNALVVFSVAYNNLSGKIPE 633
                 P        L    +   +    +P 
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 48/344 (13%), Positives = 101/344 (29%), Gaps = 105/344 (30%)

Query: 6   SLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMI 65
               L L    L +       +    ++L+++T+D + L   L  ++   F  L++L++ 
Sbjct: 82  GRVALELRSVPLPQF----PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLA 135

Query: 66  DCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNS 125
              +  +           L  L +           L  +   +                +
Sbjct: 136 RNPLRAL--PASIASLNRLRELSIR------ACPELTELPEPL----------------A 171

Query: 126 SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILD 185
           S         LV+LQ L +    +R SLP  +AN+ +L++L + ++ L+           
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS----------- 219

Query: 186 AYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNG 245
                                                    +HH  KLE++DL       
Sbjct: 220 ------------------------------------ALGPAIHHLPKLEELDLRGCTALR 243

Query: 246 EFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP 305
            +P            L                     + L + + +    +P +I   L 
Sbjct: 244 NYPPIF----GGRAPL---------------------KRLILKDCSNLLTLPLDIHR-LT 277

Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHL 349
            L   ++        +PS    +    I+ +  + L  ++ +H 
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 26/184 (14%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
               S L  + +    L E+       +  F  LE LTL  + L  +L  SIAS    L+
Sbjct: 100 AFRLSHLQHMTIDAAGLMEL----PDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLR 153

Query: 61  SLSMIDCK--------VNGVVRSQGFPHFKSLEYLDMN-TACIALNASFLQIIGASMPFL 111
            LS+  C         +     S       +L+ L +  T   +L AS      A++  L
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI-----ANLQNL 208

Query: 112 KYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSS- 170
           K L +       +    L   +  L  L+EL +       + P        L+ L +   
Sbjct: 209 KSLKIRN-----SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 171 NQLT 174
           + L 
Sbjct: 264 SNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 2   GSFSSLNTLCLMDNN-LTEI-----VTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASI 55
            S + L  L +     LTE+      T  + E     NL+ L L+++ +  SL  SIA++
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANL 205

Query: 56  FPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS---MPFLK 112
             +LKSL + +  ++ +       H   LE LD+         + L+           LK
Sbjct: 206 -QNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLR------GCTALRNYPPIFGGRAPLK 256

Query: 113 YLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQ 172
            L L       ++   L   +  L  L++L +        LP  +A + +   + V  + 
Sbjct: 257 RLILK----DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 173 LTGSISSSPLILDA 186
                   P+   A
Sbjct: 313 QAQLDQHRPVARPA 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (331), Expect = 4e-32
 Identities = 77/340 (22%), Positives = 131/340 (38%), Gaps = 62/340 (18%)

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
           ++    +    +L+V  +     +P  +      +++  I  N L  S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LR 84

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE 392
            L++S N LT  +P     G + L I      +L           + L  L +  N    
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
            +P        L+ L +++N L+  +P     L  L       N L   +P+       L
Sbjct: 135 SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPM---LPSGL 183

Query: 453 QILGISDNNISGSLPS--------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP 504
           Q L +SDN ++ SLP+        +   NRL  S+P    GL     LI++ N L   +P
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLT-SLP 237

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG 564
                 ++L+ L +S N+L  L P                L  + +  N+L   +P  + 
Sbjct: 238 ---VLPSELKELMVSGNRLTSL-PMLPSG-----------LLSLSVYRNQLT-RLPESLI 281

Query: 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
           +L+   T+NL  N L+     T   LR I S   Y   + 
Sbjct: 282 HLSSETTVNLEGNPLSE---RTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 4e-24
 Identities = 75/381 (19%), Positives = 132/381 (34%), Gaps = 71/381 (18%)

Query: 231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNN 290
           N    +++    +    P+ L  +   + +L + +++L     LP      LR L+VS N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGN 91

Query: 291 NFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA 350
                +P      L  LS F+  +  L             L  L +  N LT  +P    
Sbjct: 92  QLT-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP 141

Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
                L+ L +S+N L     S     ++L  L   +N     +P   S    L+ L ++
Sbjct: 142 ----GLQELSVSDNQLA----SLPALPSELCKLWAYNNQL-TSLPMLPS---GLQELSVS 189

Query: 411 NNNLSGKIPQWLGNLT-----------------GLQYIIIPENHLEGPIPVAFCQLDSLQ 453
           +N L+  +P     L                  GL+ +I+  N L   +P        L+
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELK 244

Query: 454 ILGISDNNISGSLPS--------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV 505
            L +S N ++ SLP          +  N+L   +P+ +  L   + + L  N L  E  +
Sbjct: 245 ELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTL 301

Query: 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG----DIPP 561
           Q     ++         +  +       +A  E R L L +   L   +       D   
Sbjct: 302 QAL--REITSAPGYSGPI--IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

Query: 562 QIGNLTRIQTLNLSHNNLTGT 582
             G        +L  + L+ T
Sbjct: 358 MFGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 4e-19
 Identities = 64/338 (18%), Positives = 101/338 (29%), Gaps = 86/338 (25%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
            L+ L ++ N L  SLP     +  L         L    S                   
Sbjct: 82  ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG------------------ 122

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
                     L  L +                 N+L              P         
Sbjct: 123 ----------LCKLWIFG---------------NQLT-----------SLPVLP----PG 142

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
           L+ LS+ ++ LA    LP      L  L   NN     +P         L   ++S N L
Sbjct: 143 LQELSVSDNQLA---SLP-ALPSELCKLWAYNNQLT-SLPMLPS----GLQELSVSDNQL 193

Query: 318 DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL 377
             S+P+       L  L   NN LT  +P   +     L+ L++S N L     S     
Sbjct: 194 -ASLPTLPSE---LYKLWAYNNRLT-SLPALPS----GLKELIVSGNRLT----SLPVLP 240

Query: 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENH 437
           ++L  L++  N     +P   S    L  L +  N L+ ++P+ L +L+    + +  N 
Sbjct: 241 SELKELMVSGNRL-TSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 438 LEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRL 475
           L      A  ++ S             +  S     R 
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 71/410 (17%), Positives = 116/410 (28%), Gaps = 104/410 (25%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            + + TL + DNNLT +             L  L +  + L      S+  + P L  LS
Sbjct: 60  PAHITTLVIPDNNLTSL-------PALPPELRTLEVSGNQLT-----SLPVLPPGLLELS 107

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGT 123
           +    +  +           L  L        +  + L  +    P L+ LS+S      
Sbjct: 108 IFSNPLTHLPAL-----PSGLCKLW-------IFGNQLTSLPVLPPGLQELSVSD----- 150

Query: 124 NSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLI 183
           N    L         L +L   NN L  SLP      + L+ L VS NQL          
Sbjct: 151 NQLASLPALPS---ELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLA--------- 194

Query: 184 LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKM 243
                  +    +          +L  L                   N+L          
Sbjct: 195 ------SLPTLPS----------ELYKLWAY---------------NNRLT--------- 214

Query: 244 NGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI 303
               P       + L+ L +  + L     LP      L+ L VS N     +P      
Sbjct: 215 --SLPALP----SGLKELIVSGNRLT---SLP-VLPSELKELMVSGNRLT-SLPMLPS-- 261

Query: 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
              L S ++  N L   +P S  +++    ++L  N L+ E          +      S 
Sbjct: 262 --GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAP--GYSG 315

Query: 364 NNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNN 413
             +   M   +      +  L   +  V       +           +N 
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 77/426 (18%), Positives = 123/426 (28%), Gaps = 109/426 (25%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
               L TL +  N LT +             L   +   + L         ++   L  L
Sbjct: 79  LPPELRTLEVSGNQLTSL----PVLPPGLLELSIFSNPLTHL--------PALPSGLCKL 126

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFG 122
            +   +                                L  +    P L+ LS+S     
Sbjct: 127 WIFGNQ--------------------------------LTSLPVLPPGLQELSVSD---- 150

Query: 123 TNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
            N    L         L +L   NN L  SLP      + L+ L VS NQL  S+ + P 
Sbjct: 151 -NQLASLPALPS---ELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLA-SLPTLPS 201

Query: 183 ---ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLS 239
               L AYNN +        SL A    LK L +S                N+L      
Sbjct: 202 ELYKLWAYNNRLT-------SLPALPSGLKELIVSG---------------NRLT----- 234

Query: 240 HIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAE 299
                   P       ++L+ L +  + L     LP      L  L V  N    R+P  
Sbjct: 235 ------SLPVLP----SELKELMVSGNRLT---SLP-MLPSGLLSLSVYRNQLT-RLPES 279

Query: 300 IGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEIL 359
           +   L S ++ N+  N L      +   +  +      +  +        +       + 
Sbjct: 280 LIH-LSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 360 VLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP 419
           + + + L      +     +      EDN   +     L + LS     + +     +I 
Sbjct: 336 LAAADWLVPAREGEPAPADRWHMFGQEDN--ADAFSLFLDR-LSETENFIKDAGFKAQIS 392

Query: 420 QWLGNL 425
            WL  L
Sbjct: 393 SWLAQL 398

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 33/214 (15%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
              S L  L   +N LT +           + L+ L++  + L      S+ ++   L  
Sbjct: 158 ALPSELCKLWAYNNQLTSL-------PMLPSGLQELSVSDNQL-----ASLPTLPSELYK 205

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L   + ++  +           L+ L        ++ + L  +      LK L +S    
Sbjct: 206 LWAYNNRLTSLPALPS-----GLKELI-------VSGNRLTSLPVLPSELKELMVSG--- 250

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
             N    L         L  L +  N L   LP  L +++S  T+++  N L+     + 
Sbjct: 251 --NRLTSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304

Query: 182 LILDAYNNEINAEITESHSLTAPNFQLKSLSLSS 215
             + +        I    +  +   + ++L L++
Sbjct: 305 REITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (308), Expect = 8e-31
 Identities = 68/306 (22%), Positives = 121/306 (39%), Gaps = 38/306 (12%)

Query: 299 EIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI 418
           L LS+N L  +      +L+ L  L L +N+      Q L    S+E LH  NNN+S ++
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 419 PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG- 477
                   G + I +  N +     +       +Q L              L  N ++  
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-------------DLKLNEIDTV 159

Query: 478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537
           +  +       L HL L +N +  +V        +L+ LDLS NKL   + P F +    
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAF-MGPEFQS---- 212

Query: 538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLT-GTILSTFTNLRHIESL 596
                + ++ I L  NKL+  I   +     ++  +L  N    GT+   F+  + ++++
Sbjct: 213 ----AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 597 DLYHNK 602
                K
Sbjct: 268 AKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (307), Expect = 1e-30
 Identities = 65/350 (18%), Positives = 125/350 (35%), Gaps = 57/350 (16%)

Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTK 379
           +I     N N  +I  ++++ L  +    L     N++ L LS N L             
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS------------ 47

Query: 380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE 439
                       +     L+    LE L+L++N L  +    L +L+ L+ + +  N+++
Sbjct: 48  ------------QISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

Query: 440 GPIPVAFCQLDSLQILGISDNNISGSLPS---------YLSYNRLNGSIPDRIDGLLRLS 490
                      S++ L  ++NNIS  +           YL+ N++            R+ 
Sbjct: 94  -----ELLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 491 HLILAHNNLEG-EVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGID 549
           +L L  N ++           + L+ L+L  N ++ +                + L  +D
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----------FAKLKTLD 197

Query: 550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPC 609
           LS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N  +     
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTL 254

Query: 610 QLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPI 659
           +        V +VA   +  K+     +  T     + G      LP P 
Sbjct: 255 RDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (299), Expect = 1e-29
 Identities = 50/338 (14%), Positives = 111/338 (32%), Gaps = 39/338 (11%)

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
             +    ++  V++++ + +  A +     ++   ++S N L     +       L++L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP 395
           LS+N L  E  +        L  L L+NN +      +      +  L   +N+    + 
Sbjct: 65  LSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS 115

Query: 396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG-PIPVAFCQLDSLQI 454
            S  +    + ++L NN ++       G  + +QY+ +  N ++           D+L+ 
Sbjct: 116 CSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 455 LGISDNNISGSLPS----------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP 504
           L +  N I   +             LS N+L   +         ++ + L +N L   + 
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG 564
             L     L+  DL  N  H      F +           +  +     K +     +  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSK-------NQRVQTVAKQTVKKLTGQNEEEC 283

Query: 565 NLTRIQTLNLSHNNLTGTILS--TFTNLRHIESLDLYH 600
            +  +      +       L       L  +     +H
Sbjct: 284 TVPTL----GHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 2e-24
 Identities = 67/371 (18%), Positives = 118/371 (31%), Gaps = 72/371 (19%)

Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L             
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADL------------- 54

Query: 196 TESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENN 255
                 T    +L+ L+LSS               N L +             +  LE+ 
Sbjct: 55  ---APFT----KLELLNLSS---------------NVLYET-----------LD--LESL 79

Query: 256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315
           + L +L L N+ +       +    S+  L  +NNN   R+            +  ++ N
Sbjct: 80  STLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANN 130

Query: 316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF 375
            +        G  + +Q LDL  N +       LA     LE L L  N +         
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQV 188

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
              KL  L L  N     +         +  + L NN L   I + L     L++  +  
Sbjct: 189 VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 436 NHLE-GPIPVAFCQLDSLQILGISDNN-------ISGSLPSYLSYNRLNGSIPDR--IDG 485
           N    G +   F +   +Q +                ++P+   Y             D 
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 486 LLRLSHLILAH 496
           L+ L H    H
Sbjct: 307 LIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 46/376 (12%), Positives = 106/376 (28%), Gaps = 97/376 (25%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
           +      + D++L +          +  N++ L L  + L     Q  A+       L +
Sbjct: 10  NRYKIEKVTDSSLKQA---LASLRQSAWNVKELDLSGNPLS----QISAADLAPFTKLEL 62

Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
           ++   N +  +       +L  LD       LN +++Q +    P ++ L  +      N
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLD-------LNNNYVQELLV-GPSIETLHAAN-----N 109

Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLIL 184
           +   +          + +++ANN +           + ++ LD+  N++  +++ + L  
Sbjct: 110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELA- 165

Query: 185 DAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMN 244
                          S       L+ L+L                 N + D         
Sbjct: 166 --------------ASSD----TLEHLNLQY---------------NFIYD--------- 183

Query: 245 GEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDIL 304
                  ++       L                     + LD+S+N     +  E     
Sbjct: 184 -------VKGQVVFAKL---------------------KTLDLSSNKLA-FMGPEFQS-A 213

Query: 305 PSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNN 364
             ++  ++  N L   I  +      L+  DL  N                ++ +     
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 365 NLEGHMFSKNFNLTKL 380
                   +   +  L
Sbjct: 273 KKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 48/306 (15%), Positives = 99/306 (32%), Gaps = 60/306 (19%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSL-HISLLQSI-------- 52
             F+ L  L L  N L E       +L + + L  L L+ + +  + +  SI        
Sbjct: 55  APFTKLELLNLSSNVLYET-----LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109

Query: 53  ------ASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGA 106
                  S     K++ + + K+   +R         ++YLD+    I    +F ++   
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA- 166

Query: 107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL 166
           S   L++L+L Y     N    +   +     L+ L +++N L   +     +   +  +
Sbjct: 167 SSDTLEHLNLQY-----NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 167 DVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKF 226
            + +N+L                 I   +  S +       L+   L        T   F
Sbjct: 220 SLRNNKLV---------------LIEKALRFSQN-------LEHFDLRGNGFHCGTLRDF 257

Query: 227 LHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD 286
                +++ V    +K             T     +   + L  PF          RL+ 
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA--------DRLIA 309

Query: 287 VSNNNF 292
           + +++ 
Sbjct: 310 LGHHHH 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  121 bits (305), Expect = 2e-30
 Identities = 67/295 (22%), Positives = 113/295 (38%), Gaps = 41/295 (13%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLED 387
             +LDL NN +T EI +       NL  L+L NN +       F+    L KL  L L  
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYLSK 109

Query: 388 NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL-EGPIPV-A 445
           N   +E+P+ + K  +L+ L ++ N ++         L  +  + +  N L    I   A
Sbjct: 110 NQL-KELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 446 FCQLDSLQILGISDNNIS----GSLPS----YLSYNRLNGSIPDRI-DGLLRLSHLILAH 496
           F  +  L  + I+D NI+    G  PS    +L  N++   +      GL  L+ L L+ 
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSF 225

Query: 497 NNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556
           N++       L     L+ L L++NKL   +P    +           +  + L  N  I
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD--------HKYIQVVYLHNNN-I 275

Query: 557 GDIPPQ-------IGNLTRIQTLNLSHNNLTGTILS--TFTNLRHIESLDLYHNK 602
             I                   ++L  N +    +   TF  +    ++ L + K
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 2e-23
 Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 30/249 (12%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
           ++P+ L        L L NN ++        NL  L  +I+  N +    P AF  L  L
Sbjct: 45  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 453 QILGISDNNISGSLPS---------YLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGE 502
           + L +S N +   LP           +  N +   +   + +GL ++  + L  N L+  
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 503 V--PVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP 560
                   G+ +L  + ++D  +  +      +           L+ + L  NK I  + 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPS-----------LTELHLDGNK-ITKVD 208

Query: 561 PQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVV 619
                 L  +  L LS N+++     +  N  H+  L L +NKL  K+P  L +   + V
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 620 FSVAYNNLS 628
             +  NN+S
Sbjct: 268 VYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 65/320 (20%), Positives = 107/320 (33%), Gaps = 58/320 (18%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
           P    L L         + I D     L +L  L + NN +    P   A +  L  L +
Sbjct: 52  PDTALLDLQ----NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 169 SSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNF----QLKSLSLSSGYEDG 220
           S NQL   +          L  + NEI         +    F    Q+  + L +     
Sbjct: 108 SKNQLK-ELPEKMPKTLQELRVHENEIT-------KVRKSVFNGLNQMIVVELGT----- 154

Query: 221 VTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHK 280
                     N L+   +          N   +   KL  + + + ++     +P     
Sbjct: 155 ----------NPLKSSGI---------ENGAFQGMKKLSYIRIADTNIT---TIPQGLPP 192

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
           SL  L +  N    ++ A     L +L+   +S N++      S  N   L+ L L+NN 
Sbjct: 193 SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNNLEG------HMFSKNFNLTKLSWLLLEDNHF-VEE 393
           L  ++P  LA     ++++ L NNN+             N      S + L  N     E
Sbjct: 252 LV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 394 IPQSLSKCL-SLEGLHLNNN 412
           I  S  +C+     + L N 
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 68/376 (18%), Positives = 109/376 (28%), Gaps = 112/376 (29%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
                 L L +N +TEI      +  N  NL  L L  +         I+ I P      
Sbjct: 51  PPDTALLDLQNNKITEI---KDGDFKNLKNLHTLILINN--------KISKISPGA---- 95

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPF-LKYLSLSYFTFG 122
                         F     LE L        L+ + L+ +   MP  L+ L +      
Sbjct: 96  --------------FAPLVKLERLY-------LSKNQLKELPEKMPKTLQELRVHE---- 130

Query: 123 TNS-SRILDQGLCPLVHLQELHMANNDLRGSL--PWCLANMTSLRTLDVSSNQLTGSIS- 178
            N  +++       L  +  + +  N L+ S         M  L  + ++   +T +I  
Sbjct: 131 -NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

Query: 179 ---SSPLILDAYNNEINAEITESHSLTAPNFQ----LKSLSLSSGYEDGVTFPKFLHHQN 231
               S   L    N+I         + A + +    L  L LS                N
Sbjct: 189 GLPPSLTELHLDGNKI-------TKVDAASLKGLNNLAKLGLSF---------------N 226

Query: 232 KLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLP--IHSHKSLRLLDVSN 289
            +  VD      NG   N        L  L L N+ L    ++P  +  HK ++++ + N
Sbjct: 227 SISAVD------NGSLANT-----PHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHN 272

Query: 290 NNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT-GEIPEH 348
           NN                    I  N      P           + L +N +   EI   
Sbjct: 273 NNIS-----------------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 349 LAIGCVNLEILVLSNN 364
                     + L N 
Sbjct: 314 TFRCVYVRAAVQLGNY 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (312), Expect = 8e-30
 Identities = 71/362 (19%), Positives = 130/362 (35%), Gaps = 40/362 (11%)

Query: 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
                  +I M   D         +N  +I+   N+ +  ++P  L      +E+L L++
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 84

Query: 364 N---NLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQ 420
                ++ + F+       +  L +  N      P        L  L L  N+LS     
Sbjct: 85  LQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 421 WLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS----GSLPS----YLSY 472
              N   L  + +  N+LE      F    SLQ L +S N ++      +PS     +SY
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201

Query: 473 NRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFD 532
           N L+      +   + +  L  +HN++   V   +    +L +L L  N L         
Sbjct: 202 NLLS-----TLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTDT--AWLL 251

Query: 533 NTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLR 591
           N           L  +DLS N+ +  I       + R++ L +S+N L   +      + 
Sbjct: 252 N--------YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 592 HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPF 651
            ++ LDL HN L   +     + + L    + +N++   +    +   T        N +
Sbjct: 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDW 357

Query: 652 LC 653
            C
Sbjct: 358 DC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (290), Expect = 5e-27
 Identities = 58/338 (17%), Positives = 117/338 (34%), Gaps = 43/338 (12%)

Query: 309 SFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA----IGCVNLEILVLSNN 364
                 N           + N        + H+  +  +       I   N +I+   N+
Sbjct: 2   GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 365 NLE---GHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQW 421
            +      +     +  ++  L L D    E    + +   +++ L++  N +    P  
Sbjct: 62  TMRKLPAALLD---SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118

Query: 422 LGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS-------GSLPS----YL 470
             N+  L  +++  N L       F     L  L +S+NN+         +  S     L
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPC 530
           S NRL   +      +  L H  +++N L       L     ++ LD S N ++ +  P 
Sbjct: 179 SSNRLT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV 230

Query: 531 FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL 590
                         L+ + L  N L       + N   +  ++LS+N L   +   F  +
Sbjct: 231 NVE-----------LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 591 RHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
           + +E L + +N+L   +      +  L V  +++N+L 
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (288), Expect = 7e-27
 Identities = 86/481 (17%), Positives = 169/481 (35%), Gaps = 70/481 (14%)

Query: 135 PLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAE 194
            L + + +   N+ +R      L +   +  L+++  Q+                EI+  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---------------EIDTY 93

Query: 195 ITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLEN 254
                        ++ L +       +  P    +   L  + L    ++   P  +  N
Sbjct: 94  AFAYAH------TIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 255 NTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISM 314
             KL +LS+ N++L         +  SL+ L +S+N     +      ++PSL   N+S 
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSY 201

Query: 315 NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKN 374
           N L     S+      ++ LD S+N +   +   +    V L IL L +NNL     +  
Sbjct: 202 NLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLT--DTAWL 250

Query: 375 FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
            N   L  + L  N   + +     K   LE L+++NN L   +  +   +  L+ + + 
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLIL 494
            NHL   +     Q D L+ L +  N+I               ++   +     L +L L
Sbjct: 310 HNHLLH-VERNQPQFDRLENLYLDHNSIV--------------TLK--LSTHHTLKNLTL 352

Query: 495 AHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPP-------CFDNTALHERRVLSLLSG 547
           +HN+ +      L     +    + D   H  I         C ++   +  R+L  ++ 
Sbjct: 353 SHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL 410

Query: 548 IDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKI 607
             +        +    G  +   T+N   +            L+  E L+   N+L  ++
Sbjct: 411 TSVVE-----KVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEV 465

Query: 608 P 608
            
Sbjct: 466 Q 466

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (283), Expect = 4e-26
 Identities = 71/483 (14%), Positives = 149/483 (30%), Gaps = 114/483 (23%)

Query: 129 LDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYN 188
           +D  L       ++H+          +    + + + +   ++ +               
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-------------- 64

Query: 189 NEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFP 248
            ++ A + +S        Q++ L+L+                 ++E++            
Sbjct: 65  -KLPAALLDSFR------QVELLNLND---------------LQIEEI-----------D 91

Query: 249 NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLS 308
            +       ++ L +                           N    +P  +   +P L+
Sbjct: 92  TYAFAYAHTIQKLYM-------------------------GFNAIRYLPPHVFQNVPLLT 126

Query: 309 SFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
              +  N L       F N   L  L +SNN+L   I +       +L+ L LS+N L  
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGL 428
              S    +  L    +  N        +L+  +++E L  ++N+++  +         L
Sbjct: 186 VDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVEL 234

Query: 429 QYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLR 488
             + +  N+L             L  + +S N +   +                   + R
Sbjct: 235 TILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIM------------YHPFVKMQR 279

Query: 489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGI 548
           L  L +++N L   + +    +  L++LDLS N L  +         L           +
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN---------L 329

Query: 549 DLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP 608
            L  N  I  +         ++ L LSHN+     L      R++    +     + KI 
Sbjct: 330 YLDHNS-IVTLKL--STHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKID 384

Query: 609 CQL 611
            QL
Sbjct: 385 YQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 101/594 (17%), Positives = 200/594 (33%), Gaps = 63/594 (10%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
           + ++   +   ++ + ++       L +F  +E   L+ + L I  +      F    ++
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAAL---LDSFRQVE--LLNLNDLQIEEID--TYAFAYAHTI 101

Query: 63  SMIDCKVN--GVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
             +    N    +    F +   L  L +    +   +S  + I  + P L  LS+S   
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL---SSLPRGIFHNTPKLTTLSMSN-- 156

Query: 121 FGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG-SIS 178
              N+  RI D        LQ L +++N L   +   L+ + SL   +VS N L+  +I 
Sbjct: 157 ---NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIP 210

Query: 179 SSPLILDAYNNEINAEITESHSLTAPNFQ-LKSLSLSSGYEDGVTFPKFLHHQNKLEDVD 237
            +   LDA +N IN        +  P    L  L L     + +T   +L +   L +VD
Sbjct: 211 IAVEELDASHNSIN-------VVRGPVNVELTILKLQH---NNLTDTAWLLNYPGLVEVD 260

Query: 238 LSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
           LS+ ++  +          +LE L + N+ L     L      +L++LD+S+N+    + 
Sbjct: 261 LSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVE 317

Query: 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
                    L +  +  N++  ++       + L+ L LS+N         L        
Sbjct: 318 RNQPQ-FDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 373

Query: 358 ILVLSNNNLEGHMFSKNF-------NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
           +     +    +                      +     VE++ ++  +C + + ++  
Sbjct: 374 VDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSV 433

Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
            +       Q    L G + +    N L         ++  L    I    +   L + +
Sbjct: 434 QSLSHYITQQGGVPLQGNEQLEAEVNELRA-------EVQQLTNEQIQQEQLLQGLHAEI 486

Query: 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPC 530
             N     +P   DGL R S  +        E         Q +  +  D K        
Sbjct: 487 DTNLRRYRLPK--DGLARSSDNLNKVFTHLKERQAFKLRETQARRTEA-DAKQKETEDLE 543

Query: 531 FDNTAL------HERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNN 578
            +N AL         +   L     L   K+      +  N    +  +  H++
Sbjct: 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 56/437 (12%), Positives = 128/437 (29%), Gaps = 54/437 (12%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
               SL    +  N L+         L     +E L    S   I++++    +   L  
Sbjct: 189 SLIPSLFHANVSYNLLS--------TLAIPIAVEELDA--SHNSINVVR--GPVNVELTI 236

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIAL--NASFLQIIGASMPFLKYLSLSYF 119
           L +     N +  +    ++  L  +D++   +       F       M  L+ L +S  
Sbjct: 237 LKLQH---NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYISN- 287

Query: 120 TFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
               N    L+    P+  L+ L +++N L   +         L  L +  N +  ++  
Sbjct: 288 ----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 341

Query: 180 SPL----ILDAYNNEIN--------AEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFL 227
           S       L   +N+ +          +       A         L  G     +   +L
Sbjct: 342 STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401

Query: 228 HHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
                L+ + L+ +    +           + S+  ++  +     +P+  ++ L     
Sbjct: 402 --DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVN 459

Query: 288 SNNNFQGRIPAEI-----------GDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDL 336
                  ++  E             +I  +L  + +  + L  S  +       L+    
Sbjct: 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQA 519

Query: 337 SNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQ 396
                T              E L   N  LE  + +K     +L          V+++  
Sbjct: 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579

Query: 397 SLSKCLSLEGLHLNNNN 413
             ++      +  ++++
Sbjct: 580 KKNRNPDTRRVSHHHHH 596

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (308), Expect = 9e-30
 Identities = 76/487 (15%), Positives = 137/487 (28%), Gaps = 83/487 (17%)

Query: 152 SLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSL 211
           ++     N    +   V+ + L  +++S                            +K L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW---------------------NVKEL 39

Query: 212 SLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGP 271
            LS      ++    L    KLE ++LS   +        LE+ + L +L L N+ +   
Sbjct: 40  DLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE- 94

Query: 272 FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFL 331
               +    S+  L  +NNN   R+            +  ++ N +        G  + +
Sbjct: 95  ----LLVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV 391
           Q LDL  N +       LA     LE L L  N +            KL  L L  N   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKL- 203

Query: 392 EEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDS 451
             +         +  + L NN L                           I  A     +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVL-------------------------IEKALRFSQN 238

Query: 452 LQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN 511
           L+   +  N                G++ D      R+    +A   ++           
Sbjct: 239 LEHFDLRGNGFHC------------GTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECT 284

Query: 512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQT 571
              L          L  P  D     +R+  +LLSG           +  +  N  R + 
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG----QGSETERLECERENQARQRE 340

Query: 572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPC---QLVELNALVVFSVAYNNLS 628
           ++         I       +   +L+     L+ ++        EL+  +  +V    L 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400

Query: 629 GKIPEMT 635
               E +
Sbjct: 401 HATEEQS 407

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (308), Expect = 1e-29
 Identities = 55/405 (13%), Positives = 125/405 (30%), Gaps = 45/405 (11%)

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
             +    ++  V++++ + +  A +     ++   ++S N L     +       L++L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP 395
           LS+N L   +          L  L L+NN +      +      +  L   +N+    + 
Sbjct: 65  LSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS 115

Query: 396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG-PIPVAFCQLDSLQI 454
            S  +    + ++L NN ++       G  + +QY+ +  N ++           D+L+ 
Sbjct: 116 CSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 455 LGISDNNISGSLPS----------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP 504
           L +  N I   +             LS N+L   +         ++ + L +N L   + 
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRV---------------LSLLSGID 549
             L     L+  DL  N  H      F +     + V                ++ +   
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFT----NLRHIESLDLYHNKLNG 605
                      P    L  ++    +  +  G+          N      +D    +   
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 606 KIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNP 650
            I    +   A +        L  ++       A  + +  +   
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (306), Expect = 2e-29
 Identities = 66/533 (12%), Positives = 160/533 (30%), Gaps = 100/533 (18%)

Query: 104 IGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSL 163
           I  +    K   ++     ++  + L        +++EL ++ N L       LA  T L
Sbjct: 5   IKQNGNRYKIEKVTD----SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 164 RTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTF 223
             L++SSN L  ++    L                         L++L L++        
Sbjct: 61  ELLNLSSNVLYETLDLESLS-----------------------TLRTLDLNN-------- 89

Query: 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLR 283
                  N +++                L     +E+L   N++++   R+     +  +
Sbjct: 90  -------NYVQE----------------LLVGPSIETLHAANNNIS---RVSCSRGQGKK 123

Query: 284 LLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG-SIPSSFGNMNFLQILDLSNNHLT 342
            + ++NN        + G     +   ++ +N +D  +      + + L+ L+L  N + 
Sbjct: 124 NIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 343 GEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNHFVEEIPQSLSKC 401
            ++     +    L+ L LS+N L        F +   ++W+ L +N     I ++L   
Sbjct: 183 -DVKG--QVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFS 236

Query: 402 LSLEGLHLNNNNLS-GKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDN 460
            +LE   L  N    G +  +      +Q   + +  ++        +     +      
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 461 NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG----EVPVQLCGLNQLQLL 516
                   +              D L+ L     A  + +G     +  +     + + +
Sbjct: 295 CCEDLPAPFA-------------DRLIALKRKEHALLSGQGSETERLECERENQARQREI 341

Query: 517 DLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSH 576
           D    +   +I                    ++     L   +         +       
Sbjct: 342 DALKEQYRTVIDQVTLR--------KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 577 NNLTGTILSTFTNLRHIESLDLYHNKLNGK-IPCQLVELNALVVFSVAYNNLS 628
                 +         ++ L     +     +  Q V+ NA+  + +  +  +
Sbjct: 394 VGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 65/521 (12%), Positives = 151/521 (28%), Gaps = 75/521 (14%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
           +      + D++L + + +      +  N++ L L  + L     Q  A+       L +
Sbjct: 10  NRYKIEKVTDSSLKQALASL---RQSAWNVKELDLSGNPLS----QISAADLAPFTKLEL 62

Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
           ++   N +  +       +L  LD       LN +++Q +    P ++ L  +      N
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLD-------LNNNYVQELLV-GPSIETLHAAN-----N 109

Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLI- 183
           +   +          + +++ANN +           + ++ LD+  N++  +++ + L  
Sbjct: 110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

Query: 184 -------LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDV 236
                  L+   N I  ++           +LK+L LSS               NKL  +
Sbjct: 167 SSDTLEHLNLQYNFI-YDVKGQVVFA----KLKTLDLSS---------------NKLAFM 206

Query: 237 DLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLP--IHSHKSLRLLDVSNNNFQG 294
                           ++   +  +SL N+ L     +   +   ++L   D+  N F  
Sbjct: 207 GPE------------FQSAAGVTWISLRNNKLV---LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 295 RIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCV 354
               +       +    ++   +      +        +          ++P   A   +
Sbjct: 252 GTLRDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLI 308

Query: 355 NLEILVLSNNNLEGHMFSK----NFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
            L+    +  + +G    +      N  +   +      +   I Q   +  +   L   
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
              L  ++         L   +               Q     +  I        +    
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQS 428

Query: 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN 511
             N              +L+        L GE  + L   N
Sbjct: 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.4 bits (188), Expect = 1e-14
 Identities = 59/429 (13%), Positives = 123/429 (28%), Gaps = 69/429 (16%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
             F+ L  L L  N L E       +L + + L  L L+ + +                 
Sbjct: 55  APFTKLELLNLSSNVLYET-----LDLESLSTLRTLDLNNNYV----------------- 92

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
                         Q      S+E L      I+      ++  +     K + L+    
Sbjct: 93  --------------QELLVGPSIETLHAANNNIS------RVSCSRGQGKKNIYLAN--- 129

Query: 122 GTNS-SRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSISS 179
             N  + + D        +Q L +  N++   +     A+  +L  L++  N +      
Sbjct: 130 --NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187

Query: 180 SPL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLED 235
                   LD  +N++     E  S       +  +SL +     V   K L     LE 
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAA----GVTWISLRN--NKLVLIEKALRFSQNLEH 241

Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGR 295
            DL     +          N ++++++    ++               L        +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCCE-D 298

Query: 296 IPAEIGDILPSLSSFNISMNALDGS----IPSSFGNMNFLQILDLSNNHLTGEIPEHLAI 351
           +PA   D L +L     ++ +  GS    +     N    + +D         + + + +
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTL 357

Query: 352 GCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE--EIPQSLSKCLSLEGLHL 409
                  L      L+  + +      +L   L +    +E     +  S    L  +  
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 410 NNNNLSGKI 418
               +  + 
Sbjct: 418 RYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 43/284 (15%), Positives = 84/284 (29%), Gaps = 27/284 (9%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
            S + +  + L +N L  I     + L    NLE+  L  +  H   L+     F   + 
Sbjct: 211 QSAAGVTWISLRNNKLVLI----EKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQR 263

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIA-LNASFLQIIGASMPFLKYLSLSYFT 120
           +  +  +    +  Q                C   L A F       +  LK    +  +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD----RLIALKRKEHALLS 319

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT------ 174
              + +  L+         +E+       R  +        +  TL+     L       
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 175 -GSISSSPLILDAYNNEIN-----AEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLH 228
             + +     L     +I       E +    L A   + + + +            +  
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDM 439

Query: 229 HQNKLEDVDLSHI---KMNGEFPNWLLENNTKLESLSLVNDSLA 269
           +Q+K   +   +    K+NGE    L   N  L+ L +   +LA
Sbjct: 440 YQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (305), Expect = 2e-29
 Identities = 81/341 (23%), Positives = 124/341 (36%), Gaps = 30/341 (8%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILDLSNN 339
            +  +D+S N+    +       L  L    +        I + +F  ++ L IL L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF--NLTKLSWLLLEDNHFVEEIPQS 397
               ++      G  NLE+L L+  NL+G + S NF   LT L  L+L DN+  +  P S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 398 LSKCL-SLEGLHLNNN-----------NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVA 445
               +     L L  N           N  GK    L  L+ +    + E  L       
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGN 207

Query: 446 FCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV 505
             +  S+  L +S N    S+            I   I            H N +     
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 506 QLCGL--NQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI 563
              GL  + ++  DLS +K+  L+   F +         + L  + L+ N+ I  I    
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSH--------FTDLEQLTLAQNE-INKIDDNA 318

Query: 564 -GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
              LT +  LNLS N L       F NL  +E LDL +N +
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (291), Expect = 1e-27
 Identities = 76/369 (20%), Positives = 125/369 (33%), Gaps = 58/369 (15%)

Query: 277 HSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDL 336
              + L+ L V        I       L SL    +  N        +F  +  L++L L
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110

Query: 337 SNNHLTG-EIPEHLAIGCVNLEILVLSNNNLE----GHMFSKNFNLTKLSWLLLEDNHFV 391
           +  +L G  +  +      +LE+LVL +NN++       F    N+ +   L L  N   
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL---NMRRFHVLDLTFNKVK 167

Query: 392 ---EEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLG--------NLTGLQYIIIPENHLEG 440
              EE   +         L L++  L      WLG          T +  + +  N  + 
Sbjct: 168 SICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 441 PIPVAFCQLDS---LQILGISDNNISGSLPS-----------------------YLSYNR 474
            +   F    +   +Q L +S++   GS                           LS ++
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 475 LNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDN 533
           +  ++   +      L  L LA N +         GL  L  L+LS N L  +    F+N
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

Query: 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRH 592
                   L  L  +DLS N  I  +  Q    L  ++ L L  N L       F  L  
Sbjct: 346 --------LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396

Query: 593 IESLDLYHN 601
           ++ + L+ N
Sbjct: 397 LQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 81/442 (18%), Positives = 144/442 (32%), Gaps = 76/442 (17%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
           + +N + L  N++ E+  T+        +L++L ++  +  + +                
Sbjct: 30  AHVNYVDLSLNSIAELNETS---FSRLQDLQFLKVEQQTPGLVI---------------- 70

Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
                    R+  F    SL  L        L+ +    +     F    +L   T    
Sbjct: 71  ---------RNNTFRGLSSLIILK-------LDYNQFLQLETGA-FNGLANLEVLTLTQC 113

Query: 125 --SSRILDQGL-CPLVHLQELHMANNDLRGSLPWCL-ANMTSLRTLDVSSNQLTGSISSS 180
                +L      PL  L+ L + +N+++   P     NM     LD++ N++    S  
Sbjct: 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SIC 170

Query: 181 PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSH 240
              L              H        +    ++  +           + + +  +DLS 
Sbjct: 171 EEDLLN--------FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSG 221

Query: 241 IKMNGEFPNWL--LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPA 298
                            TK++SL L N            S       D  N  F+G    
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSN------SYNMGSSFGHTNFKDPDNFTFKGLEA- 274

Query: 299 EIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
                   + + ++S + +  ++    F +   L+ L L+ N +  +I ++   G  +L 
Sbjct: 275 ------SGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326

Query: 358 ILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNL 414
            L LS N L   +  MF     L KL  L L  NH      QS     +L+ L L+ N L
Sbjct: 327 KLNLSQNFLGSIDSRMFEN---LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 415 SGKIPQWLGNLTGLQYIIIPEN 436
                     LT LQ I +  N
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTN 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 9e-29
 Identities = 90/497 (18%), Positives = 166/497 (33%), Gaps = 81/497 (16%)

Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
              LQE    +++L   +P    N+ S      + ++   +             +    +
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG------EQREMAV 62

Query: 196 TESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENN 255
           +        + Q   L L+       + P+   H   LE +  S   +  E P       
Sbjct: 63  SRLRDC--LDRQAHELELN--NLGLSSLPELPPH---LESLVASCNSLT-ELPELP---- 110

Query: 256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315
             L+SL + N++L     LP      L  L VSNN  + ++P E+ +    L   ++  N
Sbjct: 111 QSLKSLLVDNNNLKALSDLP----PLLEYLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNN 163

Query: 316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF 375
           +L   +P    +   L+ +   NN L  E+PE        L  +   NN+L+        
Sbjct: 164 SLK-KLPDLPPS---LEFIAAGNNQLE-ELPEL--QNLPFLTAIYADNNSLK----KLPD 212

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
               L  ++  +N   EE+P  L     L  ++ +NN L   +P    +L  L    + +
Sbjct: 213 LPLSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRD 266

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPS----YLSYNRLNGSIPDRIDGLLRLSH 491
           N+L   +P     L  L +     + +S   P+      S N +  S+ D       L  
Sbjct: 267 NYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDL---PPSLEE 321

Query: 492 LILAHNNLEGEVPVQLCGLNQLQL-----------------LDLSDNKLHGLIPPCFDNT 534
           L +++N L  E+P     L +L                   L +  N L           
Sbjct: 322 LNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVE 380

Query: 535 ALHERRVLSLLSGI-------DLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF 587
            L     L+ +  +        +  N L  + P    ++     L ++   +        
Sbjct: 381 DLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAH 436

Query: 588 TNLRHIESLDLYHNKLN 604
                +E     H+  +
Sbjct: 437 ETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 6e-23
 Identities = 69/359 (19%), Positives = 122/359 (33%), Gaps = 66/359 (18%)

Query: 278 SHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLS 337
           S+  L+     ++N    +P E  + + S + +  + +  + + P   G    + +  L 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 338 NNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQS 397
           +                    L L+N  L     S       L  L+   N    E+P+ 
Sbjct: 67  DCLDR------------QAHELELNNLGLS----SLPELPPHLESLVASCNSL-TELPEL 109

Query: 398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGI 457
                SL   + N   LS   P        L+Y+ +  N LE  +P        L+I+ +
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LPE-LQNSSFLKIIDV 160

Query: 458 SDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLD 517
            +N++   LP                     L  +   +N LE E+P +L  L  L  + 
Sbjct: 161 DNNSLK-KLPDLPP----------------SLEFIAAGNNQLE-ELP-ELQNLPFLTAIY 201

Query: 518 LSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHN 577
             +N L  L              +   L  I    N L  +  P++ NL  + T+   +N
Sbjct: 202 ADNNSLKKLPD------------LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNN 247

Query: 578 NLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT 636
            L     +       +E+L++  N L   +P     L  L V    ++ LS   P +  
Sbjct: 248 LLK----TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYY 301

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 6e-23
 Identities = 97/535 (18%), Positives = 171/535 (31%), Gaps = 103/535 (19%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
           S + L       +NLTE+      E  N  +       +S    +           +   
Sbjct: 9   SNTFLQEPLRHSSNLTEM----PVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMAVS 63

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFG 122
            + DC              +    L+       LN   L  +    P L+ L  S     
Sbjct: 64  RLRDCL------------DRQAHELE-------LNNLGLSSLPELPPHLESLVASC---- 100

Query: 123 TNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
            NS   L +    L  L   +     L    P        L  L VS+NQL         
Sbjct: 101 -NSLTELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKLPELQNS 152

Query: 183 ----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDL 238
               I+D  NN +         L      L+ ++  +     +     L +   L  +  
Sbjct: 153 SFLKIIDVDNNSLK-------KLPDLPPSLEFIAAGNNQ---LEELPELQNLPFLTAIYA 202

Query: 239 SHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLP-IHSHKSLRLLDVSNNNFQGRIP 297
            +  +  + P+        LES+   N+ L     LP + +   L  +   NN  +    
Sbjct: 203 DNNSLK-KLPDLP----LSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLK---- 250

Query: 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
             + D+ PSL + N+  N L   +P    ++ FL + +   + L+   P        NL 
Sbjct: 251 -TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP--------NLY 300

Query: 358 ILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK 417
            L  S+N +     S       L  L + +N    E+P    +   LE L  + N+L+ +
Sbjct: 301 YLNASSNEIR----SLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHLA-E 351

Query: 418 IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS--------Y 469
           +P+   NL  L    +  N L    P     ++ L++     N+    +P         +
Sbjct: 352 VPELPQNLKQLH---VEYNPLRE-FPDIPESVEDLRM-----NSHLAEVPELPQNLKQLH 402

Query: 470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH 524
           +  N L    PD  +    +  L +    +           ++L+      +  H
Sbjct: 403 VETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 52/270 (19%), Positives = 91/270 (33%), Gaps = 50/270 (18%)

Query: 373 KNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYII 432
           +N + T L   L   ++   E+P       S    +   +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 433 IPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS--------YLSYNRLNGSIPDRID 484
           + +           C       L +++  +S SLP           S N L   +P+   
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQ 111

Query: 485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL 544
            L  L         L             L+ L +S+N+L            L E +  S 
Sbjct: 112 SLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQL----------EKLPELQNSSF 154

Query: 545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
           L  ID+  N L   +P    +L   + +   +N L    L    NL  + ++   +N L 
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK 208

Query: 605 GKIPCQLVELNALVVFSVAYNNLSGKIPEM 634
            K+P   + L ++V      NN+  ++PE+
Sbjct: 209 -KLPDLPLSLESIVA----GNNILEELPEL 233

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  116 bits (292), Expect = 7e-28
 Identities = 73/284 (25%), Positives = 115/284 (40%), Gaps = 34/284 (11%)

Query: 322 PSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN---LEGHMFSKNFNLT 378
           PS     N    +     +L  E+P+ ++    N  +L L  N    ++ + F    +L 
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFK---HLR 88

Query: 379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438
            L  L L  NH       + +   +L  L L +N L+         L+ L+ + +  N +
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN 498
           E     AF ++ SL+ L + +      +                 +GL  L +L LA  N
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYIS------------EGAFEGLSNLRYLNLAMCN 196

Query: 499 LEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD 558
           L  E+P  L  L +L  LDLS N L  + P  F          L  L  + +  ++ I  
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG--------LMHLQKLWMIQSQ-IQV 245

Query: 559 IPPQ-IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
           I      NL  +  +NL+HNNLT      FT L H+E + L+HN
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (262), Expect = 5e-24
 Identities = 63/277 (22%), Positives = 98/277 (35%), Gaps = 35/277 (12%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
               +     N +  +P     I  +    N+  N +     +SF ++  L+IL LS NH
Sbjct: 44  QFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQS 397
           +   I      G  NL  L L +N L       F     L+KL  L L +N        +
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYA 155

Query: 398 LSKCLSLEGLHLNNNNLSGKIP-QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILG 456
            ++  SL  L L        I       L+ L+Y+ +   +L   IP     L  L  L 
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELD 213

Query: 457 ISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLL 516
           +S N++S ++             P    GL+ L  L +  + ++         L  L  +
Sbjct: 214 LSGNHLS-AIR------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 517 DLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553
           +L+ N L  L    F          L  L  I L  N
Sbjct: 261 NLAHNNLTLLPHDLFTP--------LHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (256), Expect = 3e-23
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 30/226 (13%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
           E+P  +S   +   L+L+ N +         +L  L+ + +  NH+      AF  L +L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 453 QILGISDNNISGSLPS------------YLSYNRLNGSIPDRI-DGLLRLSHLILAHNNL 499
             L + DN ++ ++P+            +L  N +  SIP    + +  L  L L     
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172

Query: 500 EGEVPVQ-LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD 558
              +      GL+ L+ L+L+   L  +  P            L  L  +DLS N  +  
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTP--------LIKLDELDLSGNH-LSA 221

Query: 559 IPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           I P     L  +Q L +  + +     + F NL+ +  ++L HN L
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 26/228 (11%)

Query: 277 HSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILD 335
              + L +L +S N+ +  I     + L +L++  +  N L  +IP+ +F  ++ L+ L 
Sbjct: 85  KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142

Query: 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNN----LEGHMFSKNFNLTKLSWLLLEDNHFV 391
           L NN +   IP +      +L  L L        +    F     L+ L +L L   +  
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCNL- 197

Query: 392 EEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDS 451
            EIP +L+  + L+ L L+ N+LS   P     L  LQ + + ++ ++     AF  L S
Sbjct: 198 REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 452 LQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
           L  + ++ NN++  LP             D    L  L  + L HN  
Sbjct: 257 LVEINLAHNNLT-LLP------------HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP 528
            L  N++     +    L  L  L L+ N++         GL  L  L+L DN+L  +  
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129

Query: 529 PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTI-LST 586
             F          LS L  + L  N  I  IP      +  ++ L+L        I    
Sbjct: 130 GAFVY--------LSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 587 FTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
           F  L ++  L+L    L  +IP  L  L  L    ++ N+LS
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 8e-13
 Identities = 64/310 (20%), Positives = 107/310 (34%), Gaps = 86/310 (27%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLD 167
              + L+L       N  +I+       L HL+ L ++ N +R         + +L TL+
Sbjct: 64  TNTRLLNLHE-----NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 168 VSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFL 227
           +  N+LT +I +                     L+    +LK L L +            
Sbjct: 119 LFDNRLT-TIPNGAF----------------VYLS----KLKELWLRN------------ 145

Query: 228 HHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
              N +E +           P++       L  L L                   RL  +
Sbjct: 146 ---NPIESI-----------PSYAFNRIPSLRRLDLGELK---------------RLSYI 176

Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
           S   F+G         L +L   N++M  L   IP +   +  L  LDLS NHL+  I  
Sbjct: 177 SEGAFEG---------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRP 224

Query: 348 HLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSL 404
               G ++L+ L +  + +   E + F    NL  L  + L  N+         +    L
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFD---NLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 405 EGLHLNNNNL 414
           E +HL++N  
Sbjct: 282 ERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 37/196 (18%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLD-----------FSSL------- 44
               L  L L  N++  I        +   NL  L L            F  L       
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGA---FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142

Query: 45  ----HISLLQSIA-SIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNAS 99
                I  + S A +  PSL+ L + + K    +    F    +L YL++    +    +
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202

Query: 100 FLQIIGASMPFLKYLSLSYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLA 158
                   +  L  L LS      N    +  G    L+HLQ+L M  + ++        
Sbjct: 203 L-----TPLIKLDELDLSG-----NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 159 NMTSLRTLDVSSNQLT 174
           N+ SL  ++++ N LT
Sbjct: 253 NLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 27/178 (15%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            ++   L L +N +  I   +     +  +LE L L  S  HI  ++  A  F  L +L+
Sbjct: 63  STNTRLLNLHENQIQIIKVNS---FKHLRHLEILQL--SRNHIRTIEIGA--FNGLANLN 115

Query: 64  MIDCKVN--GVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS----MPFLKYLSLS 117
            ++   N    + +  F +   L+ L        L  + ++ I +     +P L+ L L 
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELW-------LRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 118 YFTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
                    S I +     L +L+ L++A  +LR  +P  L  +  L  LD+S N L+
Sbjct: 169 ----ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 3e-27
 Identities = 91/486 (18%), Positives = 158/486 (32%), Gaps = 71/486 (14%)

Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL----ILDAYNNEI 191
           L  L+ L +++N ++            L  LD+S N+L   IS  P      LD   N  
Sbjct: 44  LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAF 102

Query: 192 NA--EITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPN 249
           +A     E  +++    QLK L LS+                 LE   +  I        
Sbjct: 103 DALPICKEFGNMS----QLKFLGLST---------------THLEKSSVLPIAHLNISKV 143

Query: 250 WLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSS 309
            L+   T  E              L   + +SL ++  +N  F   I       + +L  
Sbjct: 144 LLVLGETYGEKEDPEG--------LQDFNTESLHIVFPTNKEFH-FILDVSVKTVANLEL 194

Query: 310 FNISMNALDG------SIPSSFGNMNFLQILDLSNNHLTGEIPEHL--AIGCVNLEILVL 361
            NI     D       SI +       L  L L+N   T      +   +    +    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 362 SNNNLEGHMFSKNF-----NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG 416
           SN  L+G +  ++F     +L  LS   +  + F            ++   +   +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 417 KIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLN 476
                   ++   ++    N L   +      L  L+ L +  N +   L          
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKI------- 366

Query: 477 GSIPDRIDGLLRLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNKLHGLIPPCFDNTA 535
               +    +  L  L ++ N++  +     C     L  L++S N L   I  C     
Sbjct: 367 ---AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---- 419

Query: 536 LHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIES 595
                    +  +DL  NK+   IP Q+  L  +Q LN++ N L       F  L  ++ 
Sbjct: 420 ------PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472

Query: 596 LDLYHN 601
           + L+ N
Sbjct: 473 IWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 56/338 (16%), Positives = 111/338 (32%), Gaps = 28/338 (8%)

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
           I S   LR+L +S+N  Q  +   +      L   ++S N L   I         L+ LD
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 336 LSNNHLTGEIPEHLAIGC-VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI 394
           LS N     +P     G    L+ L LS  +LE        +L     LL+    + E+ 
Sbjct: 97  LSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 395 PQSLSKCLSLEGLHLN---NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAF----- 446
                +  + E LH+    N      +   +  +  L+   I     +            
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 447 -CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV 505
                 L  L +++   + +    +     + ++         +S++ L       +   
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY-----FSISNVKLQGQLDFRDFDY 270

Query: 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN 565
               L  L +  +  +         ++          S ++  + + +            
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEI--------FSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           ++    L+ S+N LT T+     +L  +E+L L  N+L
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.2 bits (221), Expect = 9e-19
 Identities = 79/436 (18%), Positives = 143/436 (32%), Gaps = 30/436 (6%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
             L  L L  N L +I        H   NL++L L F++   +L   I   F ++  L  
Sbjct: 69  QELEYLDLSHNKLVKI------SCHPTVNLKHLDLSFNAFD-AL--PICKEFGNMSQLKF 119

Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
           +      +           L    +               G      + L +  F     
Sbjct: 120 LGLSTTHL-EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV-FPTNKE 177

Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLIL 184
              ILD  +  + +L+  ++          + L+ +  L+T    SN    +I ++    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 185 DAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMN 244
                 +        S++    Q +             F  F +    L+ + +  +  +
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQL-----------DFRDFDYSGTSLKALSIHQVVSD 286

Query: 245 --GEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGD 302
             G   +++ E  + +   +           L          LD SNN        E   
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCG 345

Query: 303 ILPSLSSFNISMNALD--GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360
            L  L +  + MN L     I      M  LQ LD+S N ++ +  +       +L  L 
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQ 420
           +S+N L   +F       ++  L L  N   + IP+ + K  +L+ L++ +N L      
Sbjct: 406 MSSNILTDTIFRC--LPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDG 462

Query: 421 WLGNLTGLQYIIIPEN 436
               LT LQ I +  N
Sbjct: 463 IFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 64/379 (16%), Positives = 129/379 (34%), Gaps = 36/379 (9%)

Query: 284 LLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343
           L+D S N     +P    D+    +  NIS N +     S   +++ L+IL +S+N +  
Sbjct: 4   LVDRSKNGLI-HVPK---DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 344 EIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE-EIPQSLSKCL 402
            +   +      LE L LS+N L             L  L L  N F    I +      
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL---EGPIPVAFCQLDSLQILGISD 459
            L+ L L+  +L       + +L   + +++        E P  +     +SL I+  ++
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 460 N------NISGSLPSYLSYNRLNG-----------SIPDRIDGLLRLSHLILAHNNLEGE 502
                  ++S    + L  + +             SI  ++    +LS+L L +      
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 503 V---PVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDI 559
                +QL     +    +S+ KL G +     + +    + LS+     +  +      
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH---QVVSDVFGFPQ 292

Query: 560 PPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVV 619
                  + +   N + +      +   + +     LD  +N L   +      L  L  
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 620 FSVAYNNLSGKIPEMTTQF 638
             +  N L  ++ ++    
Sbjct: 353 LILQMNQLK-ELSKIAEMT 370

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 52/340 (15%), Positives = 112/340 (32%), Gaps = 38/340 (11%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS- 61
               L        ++          + + +      L+ S++   L  +  S F S+ + 
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 62  -----------LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASF--LQIIGASM 108
                      L+ I+   N  +R        ++ Y  ++   +     F      G S+
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
             L    +    FG   S I +       ++   +   +  R     C + ++    LD 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEI----FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 169 SSNQLTGSISSSPL------ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT 222
           S+N LT ++  +         L    N++   +++   +T     L+ L +S        
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 223 FPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL----AGPFRLPIHS 278
                     L  +++S   +       L     +++ L L ++ +        +L    
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIKSIPKQVVKLE--- 444

Query: 279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
             +L+ L+V++N  +  +P  I D L SL    +  N  D
Sbjct: 445 --ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 17/177 (9%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           M   S ++    +D +   +  T  +   + T LE L L  + L    L  IA +   +K
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL--KELSKIAEMTTQMK 374

Query: 61  SLSMIDCKVNG---VVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLS 117
           SL  +D   N      +       KSL  L+M++  +              P +K L L 
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLH 429

Query: 118 YFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWC-LANMTSLRTLDVSSNQL 173
                 N  + + + +  L  LQEL++A+N L+ S+P      +TSL+ + + +N  
Sbjct: 430 S-----NKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (281), Expect = 5e-27
 Identities = 65/307 (21%), Positives = 108/307 (35%), Gaps = 28/307 (9%)

Query: 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
                    S  +L+ SIPS  G    ++ LDLSNN +T  I       CVNL+ LVL++
Sbjct: 30  CDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTS 85

Query: 364 NNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQ 420
           N +   E   FS   +L  L  L L  N+             SL  L+L  N        
Sbjct: 86  NGINTIEEDSFS---SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142

Query: 421 -WLGNLTGLQYIIIPENHLEGPIPV-AFCQLDSLQILGISDNNISGSLPSYLSYNRLNGS 478
               +LT LQ + +        I    F  L  L+ L I  +++               S
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--------------S 188

Query: 479 IPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537
              +    +  +SHLIL        + + +   + ++ L+L D  L             +
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLD 597
                     + ++   L   +   +  ++ +  L  S N L       F  L  ++ + 
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

Query: 598 LYHNKLN 604
           L+ N  +
Sbjct: 308 LHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (260), Expect = 3e-24
 Identities = 56/280 (20%), Positives = 114/280 (40%), Gaps = 24/280 (8%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
           +++ LD+SNN     I         +L +  ++ N ++     SF ++  L+ LDLS N+
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNNL----EGHMFSKNFNLTKLSWLLLEDNHFVEEIP- 395
           L+  +         +L  L L  N      E  +FS   +LTKL  L + +     +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQR 167

Query: 396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455
           +  +    LE L ++ ++L    P+ L ++  + ++I+        + +      S++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQL 515
            + D ++         ++ L+    + +       ++ +   +L  +V   L  ++ L  
Sbjct: 228 ELRDTDLDT-----FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
           L+ S N+L  +    FD         L+ L  I L  N  
Sbjct: 282 LEFSRNQLKSVPDGIFDR--------LTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 39/233 (16%), Positives = 78/233 (33%), Gaps = 51/233 (21%)

Query: 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
           IP  L++  +++ L L+NN ++      L     LQ +++  N +      +F  L SL+
Sbjct: 46  IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 454 ILGISDNNISGSLPS------------YLSYNRLNGSIPDRI--DGLLRLSHLILAHNNL 499
            L +S N +S +L S             L  N    ++ +      L +L  L + + + 
Sbjct: 104 HLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161

Query: 500 EGEVPVQ-LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD 558
             ++  +   GL  L+ L++  + L    P    +                         
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS------------------------- 196

Query: 559 IPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL 611
                  +  +  L L        +         +E L+L    L+     +L
Sbjct: 197 -------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 57/330 (17%), Positives = 110/330 (33%), Gaps = 74/330 (22%)

Query: 137 VHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEIT 196
             ++ L ++NN +       L    +L+ L ++SN +  +I                   
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSF-------------- 96

Query: 197 ESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNT 256
              SL      L+ L LS                N L ++            +   +  +
Sbjct: 97  --SSLG----SLEHLDLSY---------------NYLSNL-----------SSSWFKPLS 124

Query: 257 KLESLSLVNDSL-----AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN 311
            L  L+L+ +          F         L++L V N +   +I  +    L  L    
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 312 ISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMF 371
           I  + L    P S  ++  +  L L        + E       ++E L L + +L+    
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD---- 235

Query: 372 SKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYI 431
              F+ ++LS               SL K  +   + + + +L  ++ + L  ++GL  +
Sbjct: 236 --TFHFSELSTGE----------TNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 432 IIPENHLEGPIPVAFCQLDSLQILGISDNN 461
               N L+      F +L SLQ + +  N 
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 32/277 (11%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
           G   ++ +L L +N +T I   +  +L    NL+ L L  +   I+ ++     F SL S
Sbjct: 49  GLTEAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSN--GINTIE--EDSFSSLGS 101

Query: 62  LSMIDCKVN--GVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYF 119
           L  +D   N    + S  F    SL +L+       L  +  + +G +  F     L   
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLN-------LLGNPYKTLGETSLFSHLTKLQIL 154

Query: 120 TFGTNS--SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG-- 175
             G     ++I  +    L  L+EL +  +DL+   P  L ++ ++  L +   Q     
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 176 ----SISSSPLILDAYNNEINA-EITESHSLTAPNF----QLKSLSLSSGYEDGVTFPKF 226
                ++SS   L+  + +++    +E  +    +       +++ ++   E      K 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT--DESLFQVMKL 272

Query: 227 LHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSL 263
           L+  + L +++ S  ++    P+ + +  T L+ + L
Sbjct: 273 LNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 24/204 (11%)

Query: 438 LEGPIPVAFCQLDSLQILGISDNNISGSLPS---------YLSYNRLNGSIPDRIDGLLR 488
            E     A    D   I   S  +++ S+PS          LS NR+       +   + 
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVN 77

Query: 489 LSHLILAHNNLEGEVPVQL-CGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG 547
           L  L+L  N +   +       L  L+ LDLS N L  L    F          LS L+ 
Sbjct: 78  LQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP--------LSSLTF 128

Query: 548 IDLSCNKLIGDIPPQI--GNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLN 604
           ++L  N     +       +LT++Q L + + +    I    F  L  +E L++  + L 
Sbjct: 129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 605 GKIPCQLVELNALVVFSVAYNNLS 628
              P  L  +  +    +      
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 9/174 (5%)

Query: 2   GSFSSLNTL-CLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSI-ASIFPSL 59
             FS L  L  L   N+        ++    T LE L +D S L     QS       S+
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-----QSYEPKSLKSI 197

Query: 60  KSLSMIDCKVNG--VVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLS 117
           +++S +   +    ++         S+E L++    +          G +   +K  +  
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 118 YFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSN 171
                  S   + + L  +  L EL  + N L+         +TSL+ + + +N
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (275), Expect = 2e-26
 Identities = 66/295 (22%), Positives = 107/295 (36%), Gaps = 42/295 (14%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLED 387
             +LDL NN ++ E+ +    G  +L  LVL NN +       FS    L KL  L +  
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFS---PLRKLQKLYISK 111

Query: 388 NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL-EGPIPVAF 446
           NH   EIP +L    SL  L +++N +          L  +  I +  N L         
Sbjct: 112 NHL-VEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 447 CQLDSLQILGISDNNISGSLPS---------YLSYNRLNGSIPDRI-DGLLRLSHLILAH 496
                L  L IS+  ++  +P          +L +N++  +I         +L  L L H
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGH 226

Query: 497 NNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556
           N +       L  L  L+ L L +NKL   +P    +        L LL  + L  N  I
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD--------LKLLQVVYLHTNN-I 276

Query: 557 GDIPPQI-------GNLTRIQTLNLSHNNLTGTILS--TFTNLRHIESLDLYHNK 602
             +                   ++L +N +    +   TF  +    ++   + K
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 55/301 (18%), Positives = 91/301 (30%), Gaps = 75/301 (24%)

Query: 280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNN 339
           + L+ L +S N+    IP  +     SL    I  N +       F  +  +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
            L     E  A   + L  L +S   L                           IP+ L 
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKL-------------------------TGIPKDLP 192

Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD 459
           +  +L  LHL++N +                  I              +   L  LG+  
Sbjct: 193 E--TLNELHLDHNKIQ----------------AIELE--------DLLRYSKLYRLGLGH 226

Query: 460 NNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL 518
           N I                I +     L  L  L L +N L   VP  L  L  LQ++ L
Sbjct: 227 NQIR--------------MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL-IGDIPPQI-GNLTRIQTLNLSH 576
             N +  +    F    +      +  +GI L  N +   ++ P     +T    +   +
Sbjct: 272 HTNNITKVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 577 N 577
            
Sbjct: 330 Y 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 58/319 (18%), Positives = 102/319 (31%), Gaps = 57/319 (17%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
           P    L L       + S +       L HL  L + NN +        + +  L+ L +
Sbjct: 54  PDTTLLDLQ----NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 169 SSNQLT---GSISSSPLILDAYNNEINAEITESHSLTAPNF----QLKSLSLSSGYEDGV 221
           S N L     ++ SS + L  ++N I         +    F     +  + +        
Sbjct: 110 SKNHLVEIPPNLPSSLVELRIHDNRIR-------KVPKGVFSGLRNMNCIEMGG------ 156

Query: 222 TFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKS 281
                    N LE+         G F      +  KL  L +    L     +P    ++
Sbjct: 157 ---------NPLENSGFE----PGAF------DGLKLNYLRISEAKLT---GIPKDLPET 194

Query: 282 LRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL 341
           L  L + +N  Q  I  E       L    +  N +      S   +  L+ L L NN L
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 342 TGEIPEHLAIGCVNLEILVLSNNNLE---GHMFS---KNFNLTKLSWLLLEDNHF-VEEI 394
           +  +P  L      L+++ L  NN+     + F            + + L +N     E+
Sbjct: 254 S-RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 395 PQSLSKCL-SLEGLHLNNN 412
             +  +C+     +   N 
Sbjct: 312 QPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 35/229 (15%)

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
            L  +  ++  L   +P+ +        + +  N +       F  L  L  L + +N I
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 463 SGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN 521
           S               I ++    L +L  L ++ N+L  E+P  L   + L  L + DN
Sbjct: 91  S--------------KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDN 133

Query: 522 KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL-IGDIPPQIGNLTRIQTLNLSHNNLT 580
           ++  +    F          L  ++ I++  N L      P   +  ++  L +S   LT
Sbjct: 134 RIRKVPKGVFSG--------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 581 GTILSTFTNLRHIESLDLYHNKLNGKIPCQ-LVELNALVVFSVAYNNLS 628
           G        L     L L HNK+   I  + L+  + L    + +N + 
Sbjct: 186 GIPKDLPETLNE---LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
             L  L L++N +++I     +       L+ L +  S  H+  +    ++  SL  L +
Sbjct: 78  QHLYALVLVNNKISKI---HEKAFSPLRKLQKLYI--SKNHLVEIP--PNLPSSLVELRI 130

Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
            D ++   V    F   +++  ++M       N   L+  G        L L+Y      
Sbjct: 131 HDNRIR-KVPKGVFSGLRNMNCIEMGG-----NP--LENSGFEPGAFDGLKLNYLRISEA 182

Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
               + + L     L ELH+ +N ++      L   + L  L +  NQ+ 
Sbjct: 183 KLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (270), Expect = 6e-26
 Identities = 63/282 (22%), Positives = 104/282 (36%), Gaps = 39/282 (13%)

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN---LEGHMFSKNFNLTKLSWLLLEDN 388
             +  ++  LT  +P  +     +   L L +N    L   +F     LT+L+ L L  N
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFD---KLTQLTKLSLSSN 62

Query: 389 H--FVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG-PIPVA 445
              F     QS     SL+ L L+ N +   +      L  L+++    ++L+       
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 446 FCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNN-LEGEV 503
           F  L +L  L IS  +                   + I +GL  L  L +A N+  E  +
Sbjct: 122 FLSLRNLIYLDISHTHTR--------------VAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 504 PVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI 563
           P     L  L  LDLS  +L  L P  F++        LS L  +++S N          
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNS--------LSSLQVLNMSHNNFFSLDTFPY 219

Query: 564 GNLTRIQTLNLSHNNLTGTILSTFTNL-RHIESLDLYHNKLN 604
             L  +Q L+ S N++  +      +    +  L+L  N   
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 15/221 (6%)

Query: 224 PKFLHHQNKLEDVDLSHIKMN-GEFPNWLLENNTKLESLSLVN---DSLAGPFRLPIHSH 279
                   +L  + LS   ++     +      T L+ L L      +++  F       
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL----GL 100

Query: 280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNN 339
           + L  LD  ++N +      +   L +L   +IS      +    F  ++ L++L ++ N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQ 396
                    +     NL  L LS   L       F+   +L+ L  L +  N+F      
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTF 217

Query: 397 SLSKCLSLEGLHLNNNNLSGKIPQWLGNL-TGLQYIIIPEN 436
                 SL+ L  + N++     Q L +  + L ++ + +N
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 55/289 (19%), Positives = 92/289 (31%), Gaps = 67/289 (23%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
               L + +N L+         +T L  L +SSN L+                       
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS---------------FKGCCSQS 73

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
               T     LK L LS                N +  +          F         +
Sbjct: 74  DFGTT----SLKYLDLSF---------------NGVITMS-------SNF-----LGLEQ 102

Query: 258 LESLSLVNDSL-----AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNI 312
           LE L   + +L        F     S ++L  LD+S+ + +      I + L SL    +
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFL----SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKM 157

Query: 313 SMNALDGSIPS-SFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EG 368
           + N+   +     F  +  L  LDLS   L  ++         +L++L +S+NN    + 
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL--SLEGLHLNNNNLS 415
             +     L  L  L    NH      +   +    SL  L+L  N+ +
Sbjct: 217 FPYK---CLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 36/165 (21%), Positives = 56/165 (33%), Gaps = 15/165 (9%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLE--GEVPVQLCGLNQLQLLDLSDNKLHGL 526
            L  N+L        D L +L+ L L+ N L   G       G   L+ LDLS N +  +
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93

Query: 527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ--IGNLTRIQTLNLSHNNLTGTIL 584
               F          L  L  +D   +  +  +       +L  +  L++SH +      
Sbjct: 94  -SSNFLG--------LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 585 STFTNLRHIESLDLYHNKLNGKI-PCQLVELNALVVFSVAYNNLS 628
             F  L  +E L +  N       P    EL  L    ++   L 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 62/288 (21%), Positives = 98/288 (34%), Gaps = 55/288 (19%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
           G  SS   L L  N L  +           T L  L+L  SS  +S     +       S
Sbjct: 25  GIPSSATRLELESNKLQSL---PHGVFDKLTQLTKLSL--SSNGLSFKGCCSQSDFGTTS 79

Query: 62  LSMIDCKVNGVVR-SQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPF-----LKYLS 115
           L  +D   NGV+  S  F   + LE+LD          S L+ +     F     L YL 
Sbjct: 80  LKYLDLSFNGVITMSSNFLGLEQLEHLD-------FQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 116 LSYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPW-CLANMTSLRTLDVSSNQL 173
           +S+       +R+   G    L  L+ L MA N  + +        + +L  LD+S  QL
Sbjct: 133 ISH-----THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 174 TGSISSSPL-------ILDAYNNEINAEITESHSLTAPNF----QLKSLSLSSGYEDGVT 222
              +S +         +L+  +N          SL    +     L+ L  S  +     
Sbjct: 188 E-QLSPTAFNSLSSLQVLNMSHNNFF-------SLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 223 FPKFLHHQNKLEDVDLSHIKMN--------GEFPNWLLENNTKLESLS 262
             +  H  + L  ++L+    N          F  W+ +    L  + 
Sbjct: 240 KQELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 54/323 (16%), Positives = 95/323 (29%), Gaps = 86/323 (26%)

Query: 49  LQSI-ASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS 107
           L S+   I  S   L +   K+   +    F     L  L +++  +    SF      S
Sbjct: 19  LTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL----SFKGCCSQS 73

Query: 108 ---MPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCL-ANMTSL 163
                 LKYL LS+     N    +      L  L+ L   +++L+    + +  ++ +L
Sbjct: 74  DFGTTSLKYLDLSF-----NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 164 RTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTF 223
             LD+S                                             +G       
Sbjct: 129 IYLDISHTHTR-------------------------------------VAFNG------- 144

Query: 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLR 283
               +  + LE + ++       F   +      L  L L                    
Sbjct: 145 --IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL-------------------- 182

Query: 284 LLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343
               S    + ++     + L SL   N+S N         +  +N LQ+LD S NH+  
Sbjct: 183 ----SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 344 EIPEHLAIGCVNLEILVLSNNNL 366
              + L     +L  L L+ N+ 
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 9e-25
 Identities = 63/324 (19%), Positives = 108/324 (33%), Gaps = 81/324 (25%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
               +  +       +P     I  +    N+  N +      +F +++ L++L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQS 397
           +  +I      G  +L  L L +N L       F     L+KL  L L +N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGI 457
            ++  SL  L L        I                          AF  L +L+ L +
Sbjct: 167 FNRVPSLMRLDLGELKKLEYIS-----------------------EGAFEGLFNLKYLNL 203

Query: 458 SDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLD 517
              NI                +P+ +  L+ L  L ++ N+     P    GL+ L+ L 
Sbjct: 204 GMCNIK--------------DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 518 LSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHN 577
           + ++++  +    FD                                 L  +  LNL+HN
Sbjct: 249 VMNSQVSLIERNAFD--------------------------------GLASLVELNLAHN 276

Query: 578 NLTGTILSTFTNLRHIESLDLYHN 601
           NL+      FT LR++  L L+HN
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (262), Expect = 5e-24
 Identities = 53/276 (19%), Positives = 98/276 (35%), Gaps = 56/276 (20%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN---LEGHMFSKNFNLTKLSWLLLED 387
              +  +   L+ E+P+ +     N   L L  NN   ++   F    +L  L  L L  
Sbjct: 56  FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFR---HLHHLEVLQLGR 108

Query: 388 NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
           N   +    + +   SL  L L +N L+         L+ L+ + +  N +E     AF 
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQL 507
           ++ SL  L + +      +                 +GL  L +L L   N++ ++P  L
Sbjct: 169 RVPSLMRLDLGELKKLEYIS------------EGAFEGLFNLKYLNLGMCNIK-DMP-NL 214

Query: 508 CGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567
             L  L+ L++S N    + P  F                                  L+
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHG--------------------------------LS 242

Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
            ++ L + ++ ++    + F  L  +  L+L HN L
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (257), Expect = 2e-23
 Identities = 64/248 (25%), Positives = 99/248 (39%), Gaps = 24/248 (9%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
           + R L++  NN Q  I A+    L  L    +  N++      +F  +  L  L+L +N 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIP-Q 396
           LT  IP         L  L L NN +     + F+    +  L  L L +   +E I   
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISEG 190

Query: 397 SLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILG 456
           +     +L+ L+L   N+   +P  L  L GL+ + +  NH     P +F  L SL+ L 
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 457 ISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLL 516
           + ++ +S  +              +  DGL  L  L LAHNNL          L  L  L
Sbjct: 249 VMNSQVS-LIE------------RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

Query: 517 DLSDNKLH 524
            L  N  +
Sbjct: 296 HLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 26/225 (11%)

Query: 280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILDLSN 338
             L +L +  N+ + +I     + L SL++  +  N L   IPS +F  ++ L+ L L N
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

Query: 339 NHLTGEIPEHLAIGCVNLEILVLSNNN----LEGHMFSKNFNLTKLSWLLLEDNHFVEEI 394
           N +   IP +      +L  L L        +    F     L  L +L L   +  +  
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNIKD-- 210

Query: 395 PQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI 454
             +L+  + LE L ++ N+     P     L+ L+ + +  + +      AF  L SL  
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
           L ++ NN+S SLP             D    L  L  L L HN  
Sbjct: 271 LNLAHNNLS-SLP------------HDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 57/286 (19%), Positives = 98/286 (34%), Gaps = 68/286 (23%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
           + + L++  N+++        ++  L  L +  N +   I                    
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAF--------------- 119

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
            + L      L +L L                 N L  +           P+   E  +K
Sbjct: 120 -NGLA----SLNTLELFD---------------NWLTVI-----------PSGAFEYLSK 148

Query: 258 LESLSLVNDSL----AGPFR-LPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNI 312
           L  L L N+ +    +  F  +P     SL  LD+        I     + L +L   N+
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 313 SMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EGH 369
            M  +   +P +   +  L+ L++S NH   EI      G  +L+ L + N+ +   E +
Sbjct: 204 GMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 370 MFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL-SLEGLHLNNNNL 414
            F     L  L  L L  N+    +P  L   L  L  LHL++N  
Sbjct: 261 AFD---GLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 33/227 (14%)

Query: 106 ASMPFLKYLSLSYFTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLR 164
             +  L+ L L       NS  +I       L  L  L + +N L          ++ LR
Sbjct: 96  RHLHHLEVLQLGR-----NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150

Query: 165 TLDVSSNQLTGSISSS---------PLILDAYNNEINAEITESHSLTAPNFQ----LKSL 211
            L + +N +  SI S           L L          +     ++   F+    LK L
Sbjct: 151 ELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK-----LE---YISEGAFEGLFNLKYL 201

Query: 212 SLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGP 271
           +L       +     L     LE++++S      E         + L+ L ++N  ++  
Sbjct: 202 NLGMC---NIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 272 FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
            R       SL  L++++NN    +P ++   L  L   ++  N  +
Sbjct: 258 ERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 38/227 (16%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDF---SSLHISLLQSIASIFPSL 59
               L  L L  N++ +I        +   +L  L L     + +     +        L
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGA---FNGLASLNTLELFDNWLTVIPSGAFEY----LSKL 149

Query: 60  KSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS----MPFLKYLS 115
           + L + +  +   + S  F    SL  LD+           L+ I       +  LKYL+
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLG------ELKKLEYISEGAFEGLFNLKYLN 202

Query: 116 LSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG 175
           L        + + +   L PLV L+EL M+ N      P     ++SL+ L V ++Q++ 
Sbjct: 203 LGM-----CNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS- 255

Query: 176 SISSSPL-------ILDAYNNEINAEITESHSLTAPNFQLKSLSLSS 215
            I  +          L+  +N ++   +  H L  P   L  L L  
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 27/178 (15%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            S+   L LM+NN+  I   T     +  +LE L L      I  ++  A  F  L SL+
Sbjct: 74  PSNTRYLNLMENNIQMIQADT---FRHLHHLEVLQL--GRNSIRQIEVGA--FNGLASLN 126

Query: 64  MIDCKVN--GVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS----MPFLKYLSLS 117
            ++   N   V+ S  F +   L  L        L  + ++ I +     +P L  L L 
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELW-------LRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 118 YFTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
                      I +     L +L+ L++   +++  +P  L  +  L  L++S N   
Sbjct: 180 ----ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  102 bits (257), Expect = 2e-24
 Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 28/224 (12%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
            +P  +    + + + L+ N +S            L  + +  N L      AF  L  L
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 453 QILGISDNNISGSLPS------------YLSYNRLNGSIPDRI-DGLLRLSHLILAHNNL 499
           + L +SDN    S+              +L    L   +   +  GL  L +L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 500 EGEVPVQ-LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD 558
           +  +P      L  L  L L  N++  +    F          L  L  + L  N+ +  
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG--------LHSLDRLLLHQNR-VAH 191

Query: 559 IPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
           + P    +L R+ TL L  NNL+         LR ++ L L  N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 58/252 (23%), Positives = 85/252 (33%), Gaps = 27/252 (10%)

Query: 278 SHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLS 337
            ++            Q  +P     I  +     +  N +     +SF     L IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 338 NNHLTGEIPEHLAIGCVNLEILVLSNNN----LEGHMFSKNFNLTKLSWLLLEDNHFVEE 393
           +N L   I      G   LE L LS+N     ++   F     L +L  L L+     E 
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQEL 120

Query: 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
            P       +L+ L+L +N L         +L  L ++ +  N +      AF  L SL 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 454 ILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQ 512
            L +  N ++               +       L RL  L L  NNL       L  L  
Sbjct: 181 RLLLHQNRVA--------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 513 LQLLDLSDNKLH 524
           LQ L L+DN   
Sbjct: 227 LQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 58/255 (22%), Positives = 87/255 (34%), Gaps = 57/255 (22%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLED 387
            Q + L  N ++  +P      C NL IL L +N L   +   F+    L  L  L L D
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---GLALLEQLDLSD 89

Query: 388 NHFVEEIPQS-LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAF 446
           N  +  +  +       L  LHL+   L                  +            F
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ----------------ELGPG--------LF 125

Query: 447 CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPV 505
             L +LQ L + DN +               ++PD     L  L+HL L  N +      
Sbjct: 126 RGLAALQYLYLQDNALQ--------------ALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-G 564
              GL+ L  L L  N++  + P  F +        L  L  + L  N L   +P +   
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRD--------LGRLMTLYLFANNLS-ALPTEALA 222

Query: 565 NLTRIQTLNLSHNNL 579
            L  +Q L L+ N  
Sbjct: 223 PLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN-KLHGLI 527
           +L  NR++            L+ L L  N L         GL  L+ LDLSDN +L  + 
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILST 586
           P  F          L  L  + L     + ++ P +   L  +Q L L  N L      T
Sbjct: 98  PATFHG--------LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 587 FTNLRHIESLDLYHNKL 603
           F +L ++  L L+ N++
Sbjct: 149 FRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 46/283 (16%), Positives = 76/283 (26%), Gaps = 82/283 (28%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
              + + L         S +         +L  L + +N L          +  L  LD+
Sbjct: 32  AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 169 SSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLH 228
           S N    S+  +                  H L     +L +L L               
Sbjct: 88  SDNAQLRSVDPATF----------------HGLG----RLHTLHLDR------------- 114

Query: 229 HQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVS 288
               L+++              L      L+ L L                         
Sbjct: 115 --CGLQEL-----------GPGLFRGLAALQYLYL------------------------Q 137

Query: 289 NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEH 348
           +N  Q  +P +    L +L+   +  N +      +F  ++ L  L L  N +   +  H
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

Query: 349 LAIGCVNLEILVLSNNNLE---GHMFSKNFNLTKLSWLLLEDN 388
                  L  L L  NNL        +    L  L +L L DN
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 41/227 (18%), Positives = 72/227 (31%), Gaps = 38/227 (16%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            ++   + L  N ++ +            NL  L L  +   ++ + + A  F  L  L 
Sbjct: 31  PAASQRIFLHGNRISHV---PAASFRACRNLTILWLHSN--VLARIDAAA--FTGLALLE 83

Query: 64  MIDCKVNG---VVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS----MPFLKYLSL 116
            +D   N     V    F     L  L        L+   LQ +G      +  L+YL L
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLH-------LDRCGLQELGPGLFRGLAALQYLYL 136

Query: 117 SYFTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG 175
                  N+   + D     L +L  L +  N +          + SL  L +  N++  
Sbjct: 137 QD-----NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA- 190

Query: 176 SISSSPL-------ILDAYNNEINAEITESHSLTAPNFQLKSLSLSS 215
            +             L  + N ++          AP   L+ L L+ 
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS---ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 21/177 (11%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIF---PSL 59
           +  +L  L L  N L  I             LE L L   +  +  +    + F     L
Sbjct: 54  ACRNLTILWLHSNVLARI---DAAAFTGLALLEQLDLS-DNAQLRSVD--PATFHGLGRL 107

Query: 60  KSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACI-ALNASFLQIIGASMPFLKYLSLSY 118
            +L +  C +   +    F    +L+YL +    + AL     +     +  L +L L  
Sbjct: 108 HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHG 162

Query: 119 FTFGTNS-SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
                N  S + ++    L  L  L +  N +    P    ++  L TL + +N L+
Sbjct: 163 -----NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQT 571
            Q + L  N++  +    F             L+ + L  N  +  I       L  ++ 
Sbjct: 34  SQRIFLHGNRISHVPAASFRA--------CRNLTILWLHSNV-LARIDAAAFTGLALLEQ 84

Query: 572 LNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630
           L+LS N    ++  +TF  L  + +L L    L    P     L AL    +  N L   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 631 IPEMT 635
           +P+ T
Sbjct: 144 LPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 31/179 (17%)

Query: 5   SSLNTLCLMDNN-LTEIVTTTTQELHNFTNLEYLTLD---FSSLHISLLQSIASIFPSLK 60
           + L  L L DN  L  +   T    H    L  L LD      L   L +       +L+
Sbjct: 80  ALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRG----LAALQ 132

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGA----SMPFLKYLSL 116
            L + D  +   +    F    +L +L        L+ + +  +       +  L  L L
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLF-------LHGNRISSVPERAFRGLHSLDRLLL 184

Query: 117 SYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPW-CLANMTSLRTLDVSSNQL 173
                  N    +       L  L  L++  N+L  +LP   LA + +L+ L ++ N  
Sbjct: 185 HQ-----NRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 1e-23
 Identities = 56/293 (19%), Positives = 92/293 (31%), Gaps = 36/293 (12%)

Query: 327 NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHM-FSKNFNLTKLSWLLL 385
           N NF    +   N ++              E   L   N    +   K   + + S L L
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVA 445
              +    +P +L     +  L +  N L   +P+   +L  L      +N L   +P  
Sbjct: 67  NRLNL-SSLPDNLPP--QITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPE- 117

Query: 446 FCQLDSLQILGISDNNISGSLPS--------YLSYNRLNGSIPDRIDGLLRLSHLILAHN 497
                SL+ L + +N ++  LP             N+L   +P+       L  L + +N
Sbjct: 118 --LPASLKHLDVDNNQLT-MLPELPALLEYINADNNQLT-MLPELPT---SLEVLSVRNN 170

Query: 498 NLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
            L   +P        L+ LD+S N L  L      N                   N+ I 
Sbjct: 171 QLT-FLPELP---ESLEALDVSTNLLESLPAVPVRNHHS-----EETEIFFRCRENR-IT 220

Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQ 610
            IP  I +L    T+ L  N L+  I  + +               +     Q
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (257), Expect = 4e-23
 Identities = 56/284 (19%), Positives = 95/284 (33%), Gaps = 37/284 (13%)

Query: 248 PNWLLENNTKLESLSLVNDSLA-GPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPS 306
                    K E  +L  ++       L          L ++  N    +P  +    P 
Sbjct: 26  YADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQ 81

Query: 307 LSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL 366
           ++   I+ NAL  S+P    +   L+ LD  +N L+  +PE  A    +L+ L + NN L
Sbjct: 82  ITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQL 132

Query: 367 EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLT 426
                        L ++  ++N     +P+  +   SLE L + NN L+  +P+   +L 
Sbjct: 133 T----MLPELPALLEYINADNNQL-TMLPELPT---SLEVLSVRNNQLT-FLPELPESLE 183

Query: 427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL 486
            L    +  N LE  +P    +    +   I               NR+   IP+ I  L
Sbjct: 184 ALD---VSTNLLES-LPAVPVRNHHSEETEIFFR---------CRENRIT-HIPENILSL 229

Query: 487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPC 530
                +IL  N L   +   L                       
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.8 bits (225), Expect = 3e-19
 Identities = 55/337 (16%), Positives = 105/337 (31%), Gaps = 74/337 (21%)

Query: 271 PFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISM---NALDGSIPSSFGN 327
              LPI+++ SL      N        A+            +     N     +      
Sbjct: 2   SIMLPINNNFSLSQNSFYNT--ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-- 57

Query: 328 MNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLED 387
           +N    L L+  +L+  +P++L      + +L ++ N L                     
Sbjct: 58  INQFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-------------------- 93

Query: 388 NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
                 +P+  +   SLE L   +N LS  +P+   +L  L    +  N L   +P    
Sbjct: 94  -----SLPELPA---SLEYLDACDNRLS-TLPELPASLKHLD---VDNNQLTM-LPE--- 137

Query: 448 QLDSLQILGISDNNISGSLPS--------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
               L+ +   +N ++  LP          +  N+L   +P+  +    L  L ++ N L
Sbjct: 138 LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLT-FLPELPE---SLEALDVSTNLL 192

Query: 500 EGEVPVQLCGLNQLQ----LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
           E  +P      +  +         +N++  + P    +        L     I L  N L
Sbjct: 193 E-SLPAVPVRNHHSEETEIFFRCRENRITHI-PENILS--------LDPTCTIILEDNPL 242

Query: 556 IGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH 592
              I   +   T     +      + +     T  R 
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.5 bits (219), Expect = 2e-18
 Identities = 63/346 (18%), Positives = 102/346 (29%), Gaps = 81/346 (23%)

Query: 104 IGASMPFLKYLSLSYFTFGTNSSRI---LDQGLCPLVHLQELHMANNDLRGSLPWCLANM 160
           +   +P     SLS  +F    S                       N+    L  CL  +
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 161 TSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDG 220
                L ++   L+                +   +           Q+  L ++      
Sbjct: 59  NQFSELQLNRLNLS---------------SLPDNLPP---------QITVLEITQ----- 89

Query: 221 VTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHK 280
                     N L              P         LE L   ++ L+    LP     
Sbjct: 90  ----------NALI-----------SLPELP----ASLEYLDACDNRLS---TLP-ELPA 120

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
           SL+ LDV NN     +P         L   N   N L   +P    +   L++L + NN 
Sbjct: 121 SLKHLDVDNNQLT-MLPELPA----LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQ 171

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNNLEG--HMFSKNFNLTKLSWLL-LEDNHFVEEIPQS 397
           LT  +PE       +LE L +S N LE    +  +N +  +        +N     IP++
Sbjct: 172 LT-FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPEN 225

Query: 398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP 443
           +        + L +N LS +I + L   T       P  +      
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 6e-17
 Identities = 59/325 (18%), Positives = 110/325 (33%), Gaps = 35/325 (10%)

Query: 182 LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHI 241
           L  +++ N I+    +  S      + +  +L     +           N+  ++ L+ +
Sbjct: 13  LSQNSFYNTISGTYADYFSAWD---KWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 242 KMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIG 301
            ++   P+ L      +  L +  ++L     LP     SL  LD  +N     +P    
Sbjct: 70  NLS-SLPDNLPPQ---ITVLEITQNALI---SLP-ELPASLEYLDACDNRLS-TLPELPA 120

Query: 302 DILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVL 361
               SL   ++  N L   +P        L+ ++  NN LT  +PE       +LE+L +
Sbjct: 121 ----SLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPT----SLEVLSV 167

Query: 362 SNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLE----GLHLNNNNLSGK 417
            NN L      +      L  L +  N   E +P    +    E          N ++  
Sbjct: 168 RNNQLTF--LPEL--PESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-H 221

Query: 418 IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG 477
           IP+ + +L     II+ +N L   I  +  Q  +           S S     + +R   
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

Query: 478 SIPDRIDGLLRLSHLILAHNNLEGE 502
                     + S +    +  E E
Sbjct: 282 DAVTAWFPENKQSDVSQIWHAFEHE 306

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 4e-14
 Identities = 55/285 (19%), Positives = 93/285 (32%), Gaps = 60/285 (21%)

Query: 134 CPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP---LILDAYNNE 190
           C +    EL +   +L  SLP  L     +  L+++ N L  S+   P     LDA +N 
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDNR 111

Query: 191 INAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNW 250
           ++       +L      LK L +                 N+L              P  
Sbjct: 112 LS-------TLPELPASLKHLDVD---------------NNQLT-----------MLPEL 138

Query: 251 LLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSF 310
                  LE ++  N+ L     LP     SL +L V NN         + ++  SL + 
Sbjct: 139 P----ALLEYINADNNQLT---MLP-ELPTSLEVLSVRNNQLT-----FLPELPESLEAL 185

Query: 311 NISMNALDGSIPSSFGNMNFLQ----ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL 366
           ++S N L+ S+P+     +  +          N +T  IPE++         ++L +N L
Sbjct: 186 DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPL 242

Query: 367 EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN 411
              +       T          +F     Q  +    L       
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 40/188 (21%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSL-----HISLLQS------- 51
              +  L +  N L  +            +LEYL    + L       + L+        
Sbjct: 79  PPQITVLEITQNALISL-------PELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQ 131

Query: 52  IASIFPSLKSLSMIDCKVNGVVRSQGFPH-FKSLEYLDMNTACIALNASFLQIIGASMPF 110
           +  +      L  I+   N   +    P    SLE L        +  + L  +      
Sbjct: 132 LTMLPELPALLEYINADNN---QLTMLPELPTSLEVLS-------VRNNQLTFLPELPES 181

Query: 111 LKYLSLSYFTFGTNSSRILDQGLCPLVHLQE----LHMANNDLRGSLPWCLANMTSLRTL 166
           L+ L +S      N    L        H +E         N +   +P  + ++    T+
Sbjct: 182 LEALDVST-----NLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 167 DVSSNQLT 174
            +  N L+
Sbjct: 236 ILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 44/197 (22%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            +  + L L   NL+ +       L     +  L +  ++     L S+  +  SL+ L 
Sbjct: 58  INQFSELQLNRLNLSSL----PDNL--PPQITVLEITQNA-----LISLPELPASLEYLD 106

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGT 123
             D +++ +          SL++LD       ++ + L ++      L+Y++        
Sbjct: 107 ACDNRLSTL-----PELPASLKHLD-------VDNNQLTMLPELPALLEYINADN----- 149

Query: 124 NSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG-------- 175
           N   +L +       L+ L + NN L   LP       SL  LDVS+N L          
Sbjct: 150 NQLTMLPELPT---SLEVLSVRNNQLT-FLP---ELPESLEALDVSTNLLESLPAVPVRN 202

Query: 176 -SISSSPLILDAYNNEI 191
                + +      N I
Sbjct: 203 HHSEETEIFFRCRENRI 219

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 2e-23
 Identities = 80/475 (16%), Positives = 164/475 (34%), Gaps = 51/475 (10%)

Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL----ILDAYNNEI 191
           L  L+ L +++N +R            L  LDVS N+L  +IS  P+     LD   N+ 
Sbjct: 75  LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRHLDLSFNDF 133

Query: 192 NA--EITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKM-NGEFP 248
           +      E  +LT    +L  L LS+     +      H       +DL    +  GE  
Sbjct: 134 DVLPVCKEFGNLT----KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 249 NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVS-NNNFQGRIPAEIGDILPSL 307
           +  + N T L  +   N   +    + +++   L+L ++  N+    R+   + ++    
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 308 SSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE 367
           +  N+++  ++ +   S     F     +   ++                 L ++     
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN---------------LTITERIDR 294

Query: 368 GHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTG 427
                    L  L    +++  F+       S    +    L+ ++          + + 
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 428 LQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLL 487
             ++   +N     +      L  LQ L +  N +  +             +      + 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFK----------VALMTKNMS 403

Query: 488 RLSHLILAHNNLEGEVPVQLCGL-NQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLS 546
            L  L ++ N+L      + C     + +L+LS N L G +  C              + 
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK----------VK 453

Query: 547 GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
            +DL  N++   IP  + +L  +Q LN++ N L       F  L  ++ + L+ N
Sbjct: 454 VLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.5 bits (209), Expect = 4e-17
 Identities = 82/492 (16%), Positives = 154/492 (31%), Gaps = 107/492 (21%)

Query: 161 TSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDG 220
              + L +S N ++  +    +                  L+    +L+ L LS      
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDI----------------SFLS----ELRVLRLSH----- 85

Query: 221 VTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHK 280
                     N++                 +   N  LE L + ++ L     +      
Sbjct: 86  ----------NRIR-----------SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMA 121

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQI-LDLSNN 339
           SLR LD+S N+F      +    L  L+   +S             +++   I LDL + 
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181

Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNL-EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSL 398
           H+ G   E L I    +  LV   N+L    +      L  L    ++ N    +   + 
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 399 SKCL-------------------------------SLEGLHLNNNNLSGKIPQ-----WL 422
              L                                +E L++ N  ++ +I +       
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301

Query: 423 GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI-------SGSLPS----YLS 471
             L  L    +            +     + I  +S ++          S  S      +
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361

Query: 472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCF 531
            N    S+      L RL  LIL  N L+            +  L+  D  L+ L    +
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 532 DNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR 591
           D T          +  ++LS N L G +   +    +++ L+L +N +  +I    T+L+
Sbjct: 421 DRTC----AWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQ 473

Query: 592 HIESLDLYHNKL 603
            ++ L++  N+L
Sbjct: 474 ALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.8 bits (207), Expect = 7e-17
 Identities = 57/375 (15%), Positives = 119/375 (31%), Gaps = 34/375 (9%)

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
           I     LR+L +S+N  +  +   +      L   ++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 336 LSNNHLTGEIPEHLAIGC-VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI 394
           LS N     +P     G    L  L LS             +L     LL   ++ ++  
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 395 PQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI 454
                +  +   LHL  +  S    Q   ++  L ++ +    L           +  ++
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN--------DENCQRL 238

Query: 455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGL----------LRLSHLILAHNNLEGEVP 504
           +        G     ++   +  +    +             L + +L +       E  
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG 564
                L  L +  + +          +           + ++   LS +           
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSV--------FAEMNIKMLSISDTPFIHMVCPP 350

Query: 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN--GKIPCQLVELNALVVFSV 622
           + +    LN + N  T ++    + L+ +++L L  N L    K+      +++L    V
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 623 AYNNLSGKIPEMTTQ 637
           + N+L+    + T  
Sbjct: 411 SLNSLNSHAYDRTCA 425

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 4e-16
 Identities = 80/466 (17%), Positives = 162/466 (34%), Gaps = 54/466 (11%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSI-ASIFPSLKSLS 63
                L L  N+++E+      ++   + L  L      L  + ++S+   +F   + L 
Sbjct: 52  PRTKALSLSQNSISEL---RMPDISFLSELRVL-----RLSHNRIRSLDFHVFLFNQDLE 103

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDMNT---ACIALNASF-----LQIIGASMPFLKYLS 115
            +D   N + ++       SL +LD++      + +   F     L  +G S    + L 
Sbjct: 104 YLDVSHNRL-QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 116 LSYFTFGTNSSRILDQGLCPL----------VHLQELHMANNDLRGSLPWCLANMTSLRT 165
           L        S  +LD     +           +   LH+  +           ++ +L  
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 166 LDVSSNQLTGSISSSPLI-------------LDAYNNEINAEITESHSLTAPNFQLKSLS 212
           L +S+ +L        +              +   + E   + +           ++ L+
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 213 LSS-GYEDGVTFPKFLHHQNKLEDVDLSHIKMNG--EFPNWLLENNTKLESLSLVNDSLA 269
           + +    + +   +F + +  L+ + + H+K          L     ++    L      
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 270 GPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFG--- 326
               +   S  S   L+ + N F      +    L  L +  +  N L  +         
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 327 NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLT-KLSWLLL 385
           NM+ L+ LD+S N L     +       ++ +L LS+N L G +F     L  K+  L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LPPKVKVLDL 457

Query: 386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYI 431
            +N     IP+ ++   +L+ L++ +N L          LT LQYI
Sbjct: 458 HNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 69/405 (17%), Positives = 134/405 (33%), Gaps = 54/405 (13%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
           G+ + L  L L      ++       LH    L  + LD  S HI   ++ +   P+   
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLH----LSCILLDLVSYHIKGGETESLQIPNTTV 198

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L ++    N +   Q      +L +L ++   +  + +  +++       +  +L   T 
Sbjct: 199 LHLVFHP-NSLFSVQVNMSVNALGHLQLSNIKL-NDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 122 ----GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPW-----CLANMTSLRTLDVSSNQ 172
                T    +          ++ L++ N  +   +           + SL    V +  
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316

Query: 173 LTGSISSSPLILDAYNNEINAEITESHSLTAPNF----QLKSLSLSSGYEDGVTFPKFLH 228
              S  +   +  A  N     I+++  +             L+ +              
Sbjct: 317 FLFSKEALYSVF-AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ------------- 362

Query: 229 HQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVS 288
             N   D               +L+ N  L++   V             +  SL  LDVS
Sbjct: 363 --NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMT--------KNMSSLETLDVS 411

Query: 289 NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEH 348
            N+              S+   N+S N L GS+         +++LDL NN +   IP+ 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKD 468

Query: 349 LAIGCVNLEILVLSNNNLE---GHMFSKNFNLTKLSWLLLEDNHF 390
           +      L+ L +++N L+     +F     LT L ++ L DN +
Sbjct: 469 VT-HLQALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 41/307 (13%), Positives = 105/307 (34%), Gaps = 26/307 (8%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQEL--HNFTNLEYLTLDFSSLHIS---LLQSIASIF 56
            S ++L  L L +  L +                   L +    +  +    ++     +
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 57  PS-LKSLSMIDCKVNGVVRSQGFPHFK-SLEYLDMNTACIALNASFLQIIGASMPFLKYL 114
           P  ++ L++ +  +   +  + F + + +L+ L +      +     + + +    +   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 115 SLSYFTFGTNSSRILDQGLCP--LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQ 172
            LS      + +  +    CP        L+   N    S+    + +  L+TL +  N 
Sbjct: 335 MLSI-----SDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 173 LT-----GSISSSPLILDAYNNEINA-EITESHSLTAPNFQLKSLSLSSGYEDGVTFPKF 226
           L        ++ +   L+  +  +N+          A    +  L+LSS    G  F   
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 227 LHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD 286
                 ++ +DL + ++    P   + +   L+ L++ ++ L            SL+ + 
Sbjct: 449 PPK---VKVLDLHNNRIM-SIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 287 VSNNNFQ 293
           + +N + 
Sbjct: 504 LHDNPWD 510

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (252), Expect = 1e-22
 Identities = 65/381 (17%), Positives = 114/381 (29%), Gaps = 58/381 (15%)

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSSFNISMN 315
             S       +     +      +L  LD  N++       ++  I  L  L+    + N
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-----DMTGIEKLTGLTKLICTSN 74

Query: 316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF 375
            +  ++         L  L   +N LT  +          L  L    N L     S+N 
Sbjct: 75  NIT-TLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVSQNP 127

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
            LT L+      N   E     +S    L  L  + N    K+   +   T L  +    
Sbjct: 128 LLTYLN---CARNTLTE---IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNIS----GSLPS----YLSYNRLNGSIPDRIDGLL 487
           N +     +   Q   L  L    NNI+               S N+L   I   +  L 
Sbjct: 180 NKITE---LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPLT 233

Query: 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG 547
           +L++   + N L     + +  L++L  L      L  +      NT L           
Sbjct: 234 QLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEI--DLTHNTQLIY--------- 279

Query: 548 IDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKI 607
                          + + T++  L+     +T   LS    L +   L L + +L  ++
Sbjct: 280 --FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY---LYLNNTELT-EL 333

Query: 608 PCQLVELNALVVFSVAYNNLS 628
              +     L   S    ++ 
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 2e-22
 Identities = 88/520 (16%), Positives = 157/520 (30%), Gaps = 108/520 (20%)

Query: 135 PLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAE 194
           P  +      A  +++ +       + +L +LD  ++ +T                   +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-------------------D 56

Query: 195 ITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLEN 254
           +T    LT     L  L  +S               N +  +DLS               
Sbjct: 57  MTGIEKLT----GLTKLICTS---------------NNITTLDLS--------------Q 83

Query: 255 NTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISM 314
           NT L  L+  ++ L     L +     L  L+   N       ++     P L+  N + 
Sbjct: 84  NTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLDVSQ----NPLLTYLNCAR 136

Query: 315 NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKN 374
           N L   I     +   L  LD   N    ++          L  L  S N +     S  
Sbjct: 137 NTLT-EID--VSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITELDVS-- 188

Query: 375 FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
                L+ L  + N+ + ++   L++ + L  L  ++N L+ +I   +  LT L Y    
Sbjct: 189 -QNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCS 241

Query: 435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLP-------SYLSYNRLNGSIPDRIDGLL 487
            N L     +    L  L  L     ++   +         Y             +    
Sbjct: 242 VNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297

Query: 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG 547
           +L  L      +     + L    +L  L L++ +L  L      NT L           
Sbjct: 298 QLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKS--------- 343

Query: 548 IDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR-----HIESLDLYHNK 602
           +       I D    +G +  +     +          T TN         + LD + N 
Sbjct: 344 LSCVNAH-IQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401

Query: 603 LNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFN 642
           +N  I      +      ++ + NLS   P +T  F + N
Sbjct: 402 MN--IEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 76/445 (17%), Positives = 149/445 (33%), Gaps = 81/445 (18%)

Query: 44  LHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQI 103
               +  +       L +L+ +DC  + +    G      L  L         + +   +
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICT------SNNITTL 79

Query: 104 IGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSL 163
             +    L YL+          +++ +  + PL  L  L+   N L   L   ++    L
Sbjct: 80  DLSQNTNLTYLACDS-------NKLTNLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLL 129

Query: 164 RTLDVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYED 219
             L+ + N LT  I  S       LD + N+   ++  +        QL +L  S     
Sbjct: 130 TYLNCARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTP-----QTQLTTLDCSF---- 179

Query: 220 GVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSH 279
                      NK+ ++D+S               N  L  L+   +++    +L ++ +
Sbjct: 180 -----------NKITELDVS--------------QNKLLNRLNCDTNNIT---KLDLNQN 211

Query: 280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNN 339
             L  LD S+N        ++   L  L+ F+ S+N L     S+      L  L     
Sbjct: 212 IQLTFLDCSSNKLTE---IDVTP-LTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQT 264

Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNN-LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSL 398
            L  EI          L          ++    + N  L  L     +      E+   L
Sbjct: 265 DLL-EID---LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD---CQAAGI-TELD--L 314

Query: 399 SKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGIS 458
           S+   L  L+LNN  L+ ++   + + T L+ +     H++     +  ++ +L     +
Sbjct: 315 SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEA 369

Query: 459 DNNISGSLPSYLSYNRLNGSIPDRI 483
           +          L+ N L  ++   +
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 60/317 (18%), Positives = 106/317 (33%), Gaps = 52/317 (16%)

Query: 290 NNFQGRIPAEIGDILP--SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
           N  +        D  P  + +S   +   +  +   S   +  L  LD  N+ +T ++  
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59

Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGL 407
                   L  L+ ++NN+     S+N NLT L+    + N     +   ++    L  L
Sbjct: 60  --IEKLTGLTKLICTSNNITTLDLSQNTNLTYLA---CDSNKL-TNLD--VTPLTKLTYL 111

Query: 408 HLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLP 467
           + + N L+ K+   +     L Y+    N L     +       L  L    N     L 
Sbjct: 112 NCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD 165

Query: 468 SYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI 527
                          +    +L+ L  + N +     + +     L  L+   N +  L 
Sbjct: 166 ---------------VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKL- 206

Query: 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF 587
                N  L           +D S NKL  +I   +  LT++   + S N LT   +ST 
Sbjct: 207 -DLNQNIQLTF---------LDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTL 253

Query: 588 TNLRHIESLDLYHNKLN 604
           + L    +L      L 
Sbjct: 254 SKL---TTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 68/419 (16%), Positives = 125/419 (29%), Gaps = 84/419 (20%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
              + L  L    NN+T +      +L   TNL YL  D + L              L  
Sbjct: 61  EKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSNKLT-------NLDVTPLTK 107

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L+ ++C  N  +          L YL+          +  +I  +    L  L       
Sbjct: 108 LTYLNCDTNK-LTKLDVSQNPLLTYLNCA------RNTLTEIDVSHNTQLTELDCH---- 156

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
              + +I    + P   L  L  + N +   L   ++    L  L+  +N +T  +  + 
Sbjct: 157 --LNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDLNQ 210

Query: 182 LI----LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVD 237
            I    LD  +N++  EI  +        QL     S                N L ++D
Sbjct: 211 NIQLTFLDCSSNKLT-EIDVTP-----LTQLTYFDCSV---------------NPLTELD 249

Query: 238 LSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
           +S                +KL +L  +   L     + +  +  L             I 
Sbjct: 250 VS--------------TLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRK---IK 289

Query: 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLE 357
                    L   +     +   +         L  L L+N  LT E+          L+
Sbjct: 290 ELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD---VSHNTKLK 342

Query: 358 ILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG 416
            L   N +++   FS    +  L+     +   +    ++L+       +  +  +  G
Sbjct: 343 SLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.1 bits (226), Expect = 4e-20
 Identities = 59/304 (19%), Positives = 101/304 (33%), Gaps = 29/304 (9%)

Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH 369
           ++ + N L  +    +G    L+ L    +           I  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 370 MFS---KNFNLTKLSWLLLEDNHFVEEIPQSLSKC--LSLEGLHLNNNNLSGKIPQWLGN 424
           +     +   ++ L  L LE+       P  L +     L  L+L N + +     WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 425 L-----TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSI 479
           L      GL+ + I + H             +L  L +SDN   G          ++   
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL------ISALC 196

Query: 480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHER 539
           P +   L  L+          G          QLQ LDLS N L                
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-------PSC 249

Query: 540 RVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLY 599
              S L+ ++LS   L   +P  +    ++  L+LS+N L      +   L  + +L L 
Sbjct: 250 DWPSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLK 304

Query: 600 HNKL 603
            N  
Sbjct: 305 GNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 5e-16
 Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 17/270 (6%)

Query: 364 NNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQW-- 421
              +  ++    +L  L  L   D          + K LSL+ L +    +  +I     
Sbjct: 32  GAADVELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL 89

Query: 422 -LGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP 480
            +  ++GLQ + +    + G  P    +     +  ++  N+S +              P
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERR 540
                   L  L +A  +       Q+     L  LDLSDN   G            +  
Sbjct: 150 G-------LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFP 201

Query: 541 VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLY 599
            L +L+  +       G          ++Q L+LSHN+L       +      + SL+L 
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 600 HNKLNGKIPCQLVELNALVVFSVAYNNLSG 629
              L         +L+ L    ++YN L  
Sbjct: 262 FTGLKQVPKGLPAKLSVL---DLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 54/273 (19%), Positives = 94/273 (34%), Gaps = 44/273 (16%)

Query: 207 QLKSLSLSSGYEDGVTFPKFLHHQN--KLEDVDLSHIKMNGE-FPNWLLENNTKLESLSL 263
            LK L++ +           L       L+++ L ++++ G   P  L      L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 264 VNDSLAGPF----RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG 319
            N S A        L       L++L ++  +       E   + P+LS+ ++S N   G
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 320 SIPSS----FGNMNFLQILDLSNNHLT--GEIPEHLAIGCVNLEILVLSNNNLEGHMFSK 373
                          LQ+L L N  +     +   LA   V L+ L LS+N+L     + 
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 374 NF-NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYII 432
           +    ++L+ L L      +++P+ L     L  L L+ N L    P             
Sbjct: 248 SCDWPSQLNSLNLSFTGL-KQVPKGLPA--KLSVLDLSYNRLDR-NPS------------ 291

Query: 433 IPENHLEGPIPVAFCQLDSLQILGISDNNISGS 465
                          +L  +  L +  N    S
Sbjct: 292 -------------PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 1e-14
 Identities = 50/244 (20%), Positives = 73/244 (29%), Gaps = 17/244 (6%)

Query: 184 LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNK-LEDVDLSHIK 242
           L      I + I            L+ L+L +    G   P  L      L  ++L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 243 MNGEFPNWLLE----NNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP- 297
                  WL E        L+ LS+            +    +L  LD+S+N   G    
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 298 --AEIGDILPSLSSFNISMN---ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG 352
             A      P+L    +         G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
              L  L LS   L+  +        KLS L L  N   +  P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGN 306

Query: 413 NLSG 416
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 54/312 (17%), Positives = 95/312 (30%), Gaps = 76/312 (24%)

Query: 58  SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLS 117
           ++++  +    + G +R  G    + L   ++         +   ++ A+ P L  L+L 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEV----TGTAPPPLLEATGPDLNILNLR 129

Query: 118 YFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSI 177
             ++ T  + + +        L+ L +A           +    +L TLD+S N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-- 187

Query: 178 SSSPLILDAYNNEINAEITESHSLTAPNF-QLKSLSLSSGYEDGVTFPKFLHHQNKLEDV 236
                           E     +L    F  L+ L+L                       
Sbjct: 188 ----------------ERGLISALCPLKFPTLQVLALR---------------------- 209

Query: 237 DLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRI 296
                             N  +E+ S V  +L         +   L+ LD+S+N+ +   
Sbjct: 210 ------------------NAGMETPSGVCSAL-------AAARVQLQGLDLSHNSLRDAA 244

Query: 297 PAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNL 356
            A   D    L+S N+S   L             L +LDLS N L    P         +
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD-RNPSPD--ELPQV 298

Query: 357 EILVLSNNNLEG 368
             L L  N    
Sbjct: 299 GNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 30/229 (13%), Positives = 66/229 (28%), Gaps = 23/229 (10%)

Query: 421 WLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP 480
           + G  +    +   +   +        +  SL+ L +    I   +              
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL--------- 89

Query: 481 DRIDGLLRLSHLILAHNNLEGEVPVQL--CGLNQLQLLDLSDNKLHGLIPPCFDNTALHE 538
            R+ G+  L  L L +  + G  P  L       L +L+L +           +      
Sbjct: 90  -RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW-- 146

Query: 539 RRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-------LSTFTNLR 591
             +   L  + ++    +     Q+     + TL+LS N   G            F  L+
Sbjct: 147 --LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 592 HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT 640
            +   +      +G           L    +++N+L       +  + +
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 14/213 (6%)

Query: 438 LEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL--LRLSHLILA 495
              P P      + L    +       SL   L        +    D +  L L  L + 
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 496 HNNLEGEVPVQ---LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSC 552
              +   +      + G++ LQ L L + ++ G  PP        +  +L+L +    + 
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 553 NKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKI----- 607
           +  + ++   +     ++ L+++  +              + +LDL  N   G+      
Sbjct: 137 DAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 608 --PCQLVELNALVVFSVAYNNLSGKIPEMTTQF 638
             P +   L  L + +      SG    +    
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 23/181 (12%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTL---DFSSLHISLLQSIASIFPSL 59
               L  L +   +       + +++  F  L  L L           +       FP+L
Sbjct: 147 LKPGLKVLSIAQAHSLNF---SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 60  KSLSMIDCKVNGV--VRSQGFPHFKSLEYLDM--NTACIALNASFLQIIGASMPFLKYLS 115
           + L++ +  +     V S        L+ LD+  N    +L  +           L  L+
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN----SLRDAAGAPSCDWPSQLNSLN 259

Query: 116 LSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG 175
           LS+        + + +GL     L  L ++ N L    P     +  +  L +  N    
Sbjct: 260 LSF-----TGLKQVPKGLPA--KLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310

Query: 176 S 176
           S
Sbjct: 311 S 311

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 54/224 (24%), Positives = 82/224 (36%), Gaps = 25/224 (11%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPV-AFCQLDS 451
           +IP +L    S + L L+ N L         +   LQ + +    ++  I   A+  L  
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 452 LQILGISDNNISGSLPS------------YLSYNRLNGSIPDRI-DGLLRLSHLILAHNN 498
           L  L ++ N I  SL                    L  S+ +     L  L  L +AHN 
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 499 L-EGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
           +   ++P     L  L+ LDLS NK+  +               LSL    DLS N  + 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL----DLSLNP-MN 190

Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
            I P      R++ L L  N L       F  L  ++ + L+ N
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 8e-17
 Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 21/230 (9%)

Query: 296 IPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVN 355
           IP    ++  S  + ++S N L      SF +   LQ+LDLS   +   I +       +
Sbjct: 22  IPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 356 LEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
           L  L+L+ N +       FS    L+ L  L+  + +        +    +L+ L++ +N
Sbjct: 78  LSTLILTGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 413 NL-SGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLS 471
            + S K+P++  NLT L+++ +  N ++         L  + +L +S           LS
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS---------LDLS 185

Query: 472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN 521
            N +N  I       +RL  L L  N L+         L  LQ + L  N
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 18/193 (9%)

Query: 254 NNTKLESLSLVNDSL----AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSS 309
           +  +L+ L L    +     G +     S   L  L ++ N  Q  +       L SL  
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 310 FNISMNALDGSIPS-SFGNMNFLQILDLSNNHLTGEIPEHLA-IGCVNLEILVLSNNNL- 366
                  L  S+ +   G++  L+ L++++N +              NLE L LS+N + 
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 367 --EGHMFSKNFNLTKLSW-LLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLG 423
                       +  L+  L L  N  +  I     K + L+ L L+ N L         
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 424 NLTGLQYIIIPEN 436
            LT LQ I +  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 13/138 (9%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNKLHGLI 527
            LS+N L             L  L L+   ++  +       L+ L  L L+ N +  L 
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTIL-S 585
              F          LS L  +       +  +     G+L  ++ LN++HN +    L  
Sbjct: 93  LGAFSG--------LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 586 TFTNLRHIESLDLYHNKL 603
            F+NL ++E LDL  NK+
Sbjct: 144 YFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 63/261 (24%)

Query: 137 VHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEIT 196
              + L ++ N LR    +   +   L+ LD+S  ++  +I        AY +       
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED-----GAYQS------- 74

Query: 197 ESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNT 256
               L+     L +L L                 N ++ +                   +
Sbjct: 75  ----LS----HLSTLIL---------------TGNPIQSL-----------ALGAFSGLS 100

Query: 257 KLESLSLVNDSL----AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNI 312
            L+ L  V  +L      P        K+L+ L+V++N  Q     E    L +L   ++
Sbjct: 101 SLQKLVAVETNLASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 313 SMNALDGSIPS-SFGNMNFLQI----LDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE 367
           S N +  SI       ++ + +    LDLS N +   I    A   + L+ L L  N L+
Sbjct: 157 SSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEIRLKELALDTNQLK 213

Query: 368 GHMFSKNFNLTKLSWLLLEDN 388
                    LT L  + L  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 58/230 (25%)

Query: 106 ASMPFLKYLSLSYFTFGTNSSRILDQGLC-PLVHLQELHMANNDLRGSLPW-CLANMTSL 163
            S P L+ L LS         + ++ G    L HL  L +  N ++ SL     + ++SL
Sbjct: 49  FSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102

Query: 164 RTLDVSSNQLTGSISSSPL-------ILDAYNNEINAEITESHSLTAPNF-----QLKSL 211
           + L      L  S+ + P+        L+  +N I        S   P +      L+ L
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI-------QSFKLPEYFSNLTNLEHL 154

Query: 212 SLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLE-SLSLVNDSLAG 270
            L                 NK++ +         +     L     L  SL L  + +  
Sbjct: 155 DL---------------SSNKIQSIY------CTDLRV--LHQMPLLNLSLDLSLNPMN- 190

Query: 271 PFRLPIHSHKSLRL--LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
              +   + K +RL  L +  N  +  +P  I D L SL    +  N  D
Sbjct: 191 --FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 75/428 (17%), Positives = 143/428 (33%), Gaps = 79/428 (18%)

Query: 233 LEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL----AGPFRLPIHSHKSLRLLDVS 288
           ++ +D+   +++      LL    + + + L +  L           +  + +L  L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 289 NNNFQGRIPAEIGDIL----PSLSSFNISMNALD----GSIPSSFGNMNFLQILDLSNNH 340
           +N         +   L      +   ++    L     G + S+   +  LQ L LS+N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 341 LTGE----IPEHLAIGCVNLEILVLSNNNLE-------GHMFSKNFNLTKLSWLLLEDNH 389
           L       + E L      LE L L   +L          +     +  +L+   + +N 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT---VSNND 181

Query: 390 F----VEEIPQSLSKC-LSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHL-- 438
                V  + Q L      LE L L +  ++      +   + +   L+ + +  N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 439 EGPIPVAFCQLD---SLQILGISDNNIS----GSLPSYLSYNRLNGSIPDRIDGLLRLSH 491
            G   +    L     L+ L I +  I+    G L   L                  L  
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-------------SLKE 288

Query: 492 LILAHNNLEGEVPVQLCGL-----NQLQLLDLSDNKLHGLIPPCFDN--TALHERRVLSL 544
           L LA N L  E    LC        QL+ L +           C  +  + L + R L  
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT---AACCSHFSSVLAQNRFLLE 345

Query: 545 LSGIDLSCNKLIGDIPPQIG-----NLTRIQTLNLSHNNLT----GTILSTFTNLRHIES 595
           L    +S N+L      ++        + ++ L L+  +++     ++ +T      +  
Sbjct: 346 L---QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 596 LDLYHNKL 603
           LDL +N L
Sbjct: 403 LDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 2e-16
 Identities = 80/481 (16%), Positives = 155/481 (32%), Gaps = 92/481 (19%)

Query: 32  TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNT 91
            +++ L +    L  +    +  +    + + + DC +                      
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-------------------EA 43

Query: 92  ACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGL-CPLVHLQELHMANNDLR 150
            C  + +S L+      P L  L+L     G      + QGL  P   +Q+L + N  L 
Sbjct: 44  RCKDI-SSALR----VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

Query: 151 ----GSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNF 206
               G L   L  + +L+ L +S N L    +   L+ +               L  P  
Sbjct: 99  GAGCGVLSSTLRTLPTLQELHLSDNLLGD--AGLQLLCEG--------------LLDPQC 142

Query: 207 QLKSLSLSS---GYEDGVTFPKFLHHQNKLEDVDLSHIKMNGE----FPNWLLENNTKLE 259
           +L+ L L                L  +   +++ +S+  +N          L ++  +LE
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 260 SLSLVNDSL----AGPFRLPIHSHKSLRLLDVSNNNFQGR----IPAEIGDILPSLSSFN 311
           +L L +  +           + S  SLR L + +N         +   +      L +  
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 312 ISMNALD----GSIPSSFGNMNFLQILDLSNNHLTGE----IPEHLAIGCVNLEILVLSN 363
           I    +     G +         L+ L L+ N L  E    + E L      LE L + +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 364 NNLE-------GHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL-----SLEGLHLNN 411
            +           + ++N  L +L    + +N   +   + L + L      L  L L +
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQ---ISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 412 NNLSGK----IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL-----DSLQILGISDNNI 462
            ++S      +   L     L+ + +  N L     +   +        L+ L + D   
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

Query: 463 S 463
           S
Sbjct: 440 S 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 5e-15
 Identities = 84/448 (18%), Positives = 154/448 (34%), Gaps = 70/448 (15%)

Query: 4   FSSLNTLCLMDNNLTEI-VTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIF----PS 58
                 + L D  LTE      +  L     L  L L  + L    +  +          
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 59  LKSLSMIDCKVNGV---VRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASM----PFL 111
           ++ LS+ +C + G    V S       +L+ L ++   +    + LQ++   +      L
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL--GDAGLQLLCEGLLDPQCRL 144

Query: 112 KYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLA-----NMTSLRTL 166
           + L L Y +    S   L   L      +EL ++NND+  +    L      +   L  L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 167 DVSSNQLTG----------SISSSPLILDAYNNEINAE--ITESHSLTAPNFQLKSLSLS 214
            + S  +T           +  +S   L   +N++           L  P+ +L++L + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 215 S---GYEDGVTFPKFLHHQNKLEDVDLS--HIKMNG--EFPNWLLENNTKLESLSLVNDS 267
                 +      + L  +  L+++ L+   +   G       LLE   +LESL + + S
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 268 L----AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS 323
                   F   +  ++ L  L +SNN  +     E+   L    S              
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-------------- 370

Query: 324 SFGNMNFLQILDLSNNHLTGEIPEHLA---IGCVNLEILVLSNNNLE---GHMFSKNF-- 375
                  L++L L++  ++      LA   +   +L  L LSNN L         ++   
Sbjct: 371 ------VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLS 403
               L  L+L D ++ EE+   L     
Sbjct: 425 PGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 5e-15
 Identities = 86/517 (16%), Positives = 152/517 (29%), Gaps = 128/517 (24%)

Query: 111 LKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLR----GSLPWCLANMTSLRTL 166
           ++ L +            L   L      Q + + +  L       +   L    +L  L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 167 DVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSS---GYEDGVTF 223
           ++ SN+L         +L                L  P+ +++ LSL +           
Sbjct: 62  NLRSNELGDV--GVHCVLQG--------------LQTPSCKIQKLSLQNCCLTGAGCGVL 105

Query: 224 PKFLHHQNKLEDVDLSHIKMNGE----FPNWLLENNTKLESLSLVNDSL----AGPFRLP 275
              L     L+++ LS   +           LL+   +LE L L   SL      P    
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
           + +    + L VSNN+        +   L                      +   L+ L 
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKD--------------------SPCQLEALK 205

Query: 336 LSNNHLTGEIPEHLA---IGCVNLEILVLSNNNL--EGHMF---SKNFNLTKLSWLLLED 387
           L +  +T +    L        +L  L L +N L   G            ++L  L + +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 388 NHF----VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP 443
                    ++ + L    SL+ L L  N L  +         G + +            
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDE---------GARLLC----------E 306

Query: 444 VAFCQLDSLQILGISDNNISG----SLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
                   L+ L +   + +        S L+ NR              L  L +++N L
Sbjct: 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-------------FLLELQISNNRL 353

Query: 500 EGEVPVQLC-----GLNQLQLLDLSDNKL-----HGLIPPCFDNTALHERRVLSLLSGID 549
           E     +LC       + L++L L+D  +       L      N +L E         +D
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE---------LD 404

Query: 550 LSCNKLIGDIPPQI------GNLTRIQTLNLSHNNLT 580
           LS N  +GD                ++ L L     +
Sbjct: 405 LSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 36/293 (12%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQEL--HNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
                L + +N++ E       +    +   LE L L+   +     + +  I  S  SL
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 63  SMIDCKVN-----GVVR-SQGFPH-FKSLEYLDMNTACI-ALNASFLQIIGASMPFLKYL 114
             +    N     G+     G  H    L  L +    I A     L  +  +   LK L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 115 SLSYFTFGTNSSRILDQGLC-PLVHLQELHMANNDLRG----SLPWCLANMTSLRTLDVS 169
           SL+    G   +R+L + L  P   L+ L + +              LA    L  L +S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 170 SNQLTGS----------ISSSPL-ILDAYNNEINAEITE--SHSLTAPNFQLKSLSLSS- 215
           +N+L  +             S L +L   + +++       + +L A N  L+ L LS+ 
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNN 408

Query: 216 --GYEDGVTFPKFLHHQN-KLEDVDLSHIKMNGEFPNWL---LENNTKLESLS 262
             G    +   + +      LE + L  I  + E  + L    ++   L  +S
Sbjct: 409 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 40/220 (18%), Positives = 64/220 (29%), Gaps = 56/220 (25%)

Query: 402 LSLEGLHLNNNNLSGK-IPQWLGNLTGLQYIIIPENHL--EG--PIPVAFCQLDSLQILG 456
           L ++ L +    LS     + L  L   Q + + +  L       I  A     +L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 457 ISDNNISGSLPSYLSYNRLNGSIPDRIDGL----LRLSHLILAHNNLEGEVPVQLCGL-- 510
           +  N +       +              GL     ++  L L +  L G     L     
Sbjct: 63  LRSNELGDVGVHCVL------------QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 511 --NQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR 568
               LQ L LSDN L                  L LL    L                 R
Sbjct: 111 TLPTLQELHLSDNLL--------------GDAGLQLLCEGLLDPQ-------------CR 143

Query: 569 IQTLNLSHNNLTGT----ILSTFTNLRHIESLDLYHNKLN 604
           ++ L L + +L+      + S        + L + +N +N
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.5 bits (211), Expect = 2e-17
 Identities = 52/298 (17%), Positives = 95/298 (31%), Gaps = 39/298 (13%)

Query: 352 GCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN 411
                    L   ++          L  +  ++  ++  ++ + Q +    ++  L LN 
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNG 74

Query: 412 NNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLS 471
           N L+  I   L NL  L ++ + EN ++         L  L+ L +  N IS        
Sbjct: 75  NKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-------- 122

Query: 472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCF 531
                  I   +  L +L  L L +N +       L  L +L  L L DN++   I P  
Sbjct: 123 ------DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLA 172

Query: 532 DNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR 591
             T L           + LS N  I D+   +  L  +  L L         ++  +NL 
Sbjct: 173 GLTKLQN---------LYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 592 HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGN 649
              ++      L    P  + +       +V ++            +        K  
Sbjct: 222 VPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 6e-14
 Identities = 53/308 (17%), Positives = 106/308 (34%), Gaps = 64/308 (20%)

Query: 123 TNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS-S 180
           T S+ I             + ++    +  ++      + S+  +  +++ +  S+    
Sbjct: 6   TVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQ 62

Query: 181 PL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDV 236
            L     L    N++  +I    +L      L  L L                +NK++D+
Sbjct: 63  YLPNVTKLFLNGNKLT-DIKPLTNLK----NLGWLFLD---------------ENKIKDL 102

Query: 237 DLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRL-PIHSHKSLRLLDVSNNNFQGR 295
                          L++  KL+SLSL ++ ++    +  +     L  L + NN     
Sbjct: 103 SS-------------LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNK---- 142

Query: 296 IPAEIGDI-----LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA 350
               I DI     L  L + ++  N +   I      +  LQ L LS NH++ ++   LA
Sbjct: 143 ----ITDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LA 194

Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
            G  NL++L L +        +   NL   + +   D   V     S         +  +
Sbjct: 195 -GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253

Query: 411 NNNLSGKI 418
               + ++
Sbjct: 254 LPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 3e-10
 Identities = 54/309 (17%), Positives = 109/309 (35%), Gaps = 39/309 (12%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
           +F+      L   ++T+ VT      +   +++   +  ++  I  +Q I    P++  L
Sbjct: 19  AFAETIKDNLKKKSVTDAVT-----QNELNSIDQ--IIANNSDIKSVQGIQY-LPNVTKL 70

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIG-ASMPFLKYLSLSYFTF 121
            +   K+  +   +   + K+L +L ++   I        +     +  LK LSL     
Sbjct: 71  FLNGNKLTDI---KPLTNLKNLGWLFLDENKIK------DLSSLKDLKKLKSLSLE---- 117

Query: 122 GTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT--GSIS 178
               + I D  GL  L  L+ L++ NN +       L+ +T L TL +  NQ++    ++
Sbjct: 118 ---HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLA 172

Query: 179 SSPLI--LDAYNNEINAEITESHSLTAPNFQLKSLSLSSG--YEDGVTFPKFLHHQNKLE 234
               +  L    N I +++     L      L  L L S       +     L   N ++
Sbjct: 173 GLTKLQNLYLSKNHI-SDLRALAGLK----NLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 235 DVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQG 294
           + D S +       +   E       L    + ++  F  P+   K+             
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287

Query: 295 RIPAEIGDI 303
            +     D+
Sbjct: 288 EVYTVSYDV 296

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 55/318 (17%), Positives = 115/318 (36%), Gaps = 65/318 (20%)

Query: 52  IASIFP--SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMP 109
           I  IFP  +       + K   V  +       S++ +  N + I  +   +Q     +P
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQ----YLP 65

Query: 110 FLKYLSLSYFTFGTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
            +  L L+        +++ D + L  L +L  L +  N ++  L   L ++  L++L +
Sbjct: 66  NVTKLFLNG-------NKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116

Query: 169 SSNQLTGSISSSPL-------ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGV 221
             N ++     + L        L   NN+I  +IT    LT    +L +LSL        
Sbjct: 117 EHNGIS---DINGLVHLPQLESLYLGNNKIT-DITVLSRLT----KLDTLSLED------ 162

Query: 222 TFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKS 281
                    N++ D+               L   TKL++L L  + ++      +   K+
Sbjct: 163 ---------NQISDIV-------------PLAGLTKLQNLYLSKNHISDL--RALAGLKN 198

Query: 282 LRLLDVSNNNFQGRIPAEIGD--ILPSLSSFNISMNALDG-SIPSSFGNMNFLQILDLSN 338
           L +L++ +     +      +  +  ++ + + S+   +  S    +   N    L    
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

Query: 339 NHLTGEIPEHLAIGCVNL 356
           N ++    + + IG    
Sbjct: 259 NEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 5e-09
 Identities = 51/264 (19%), Positives = 90/264 (34%), Gaps = 34/264 (12%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +    ++  L L  N LT+I     + L N  NL +L LD +   I  L S+      LK
Sbjct: 61  IQYLPNVTKLFLNGNKLTDI-----KPLTNLKNLGWLFLDEN--KIKDLSSLK----DLK 109

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
            L  +  + NG+    G  H   LE L +    I  + + L    + +  L  LSL    
Sbjct: 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLE--- 161

Query: 121 FGTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
                ++I D   L  L  LQ L+++ N +   L   LA + +L  L++ S +      +
Sbjct: 162 ----DNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPIN 215

Query: 180 ------SPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKL 233
                  P  +   +  +      S         +K       + + V+F  +       
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE--FTNEVSFIFYQPVTIGK 273

Query: 234 EDVDLSHIKMNGEFPNWLLENNTK 257
                           + +  +  
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYDVD 297

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 25/218 (11%)

Query: 395 PQSLSKCL-SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
           P      + S   ++ +  NL+  +P           + + EN L             L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 454 ILGISDNNIS-----GSLPS----YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP 504
            L +    ++     G+LP      LS+N+L  S+P     L  L+ L ++ N L     
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI- 563
             L GL +LQ L L  N+L  L P                L  + L+ N L  ++P  + 
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTP--------TPKLEKLSLANNNL-TELPAGLL 168

Query: 564 GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
             L  + TL L  N+L       F +   +    L+ N
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 24/215 (11%)

Query: 324 SFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL 383
               +     ++    +LT  +P  L     +  IL LS N L     +     T+L+ L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP 443
            L+    + ++         L  L L++N L   +P     L  L  + +  N L     
Sbjct: 61  NLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 444 VAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGE 502
            A   L  LQ L             YL  N L  ++P  +     +L  L LA+NNL  E
Sbjct: 118 GALRGLGELQEL-------------YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-E 162

Query: 503 VPVQLC-GLNQLQLLDLSDNKLHGLIPPCFDNTAL 536
           +P  L  GL  L  L L +N L+ +    F +  L
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 8e-12
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 14/185 (7%)

Query: 256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315
                L L  + L       +  +  L  L++       ++       LP L + ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNN---NLEGHMFS 372
            L  S+P     +  L +LD+S N LT  +P     G   L+ L L  N    L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 373 KNFNLTKLSWLLLEDNHFVEEIPQSL-SKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYI 431
                 KL  L L +N+   E+P  L +   +L+ L L  N+L   IP+       L + 
Sbjct: 146 P---TPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 432 IIPEN 436
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 43/219 (19%), Positives = 72/219 (32%), Gaps = 26/219 (11%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
           S   ++    N    +P    D+    +  ++S N L     ++      L  L+L    
Sbjct: 11  SHLEVNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNHFVEEIPQSL- 398
           LT ++          L  L LS+N L           L  L+ L +  N     +P    
Sbjct: 67  LT-KLQVDG--TLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRL-TSLPLGAL 120

Query: 399 SKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGIS 458
                L+ L+L  N L    P  L     L+ + +  N+L          L++L  L + 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 459 DNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHN 497
           +N++               +IP    G   L    L  N
Sbjct: 181 ENSLY--------------TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 13/136 (9%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP 528
           +LS N L       +    RL+ L L    L  ++ V    L  L  LDLS N+L  L P
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQSL-P 93

Query: 529 PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTF 587
                        L  L+ +D+S N+ +  +P      L  +Q L L  N L        
Sbjct: 94  LLGQT--------LPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 588 TNLRHIESLDLYHNKL 603
           T    +E L L +N L
Sbjct: 145 TPTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP 528
                 L  ++P  +      + L L+ N L       L    +L  L+L   +L  L  
Sbjct: 16  NCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-- 70

Query: 529 PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFT 588
                        L +L  +DLS N+L   +P     L  +  L++S N LT   L    
Sbjct: 71  QVDGT--------LPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 589 NLRHIESLDLYHNKL 603
            L  ++ L L  N+L
Sbjct: 122 GLGELQELYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 46/237 (19%)

Query: 159 NMTSLRTLDVSSNQLT---GSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSS 215
            + S   ++     LT     +     IL    N +                    + S 
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY-------------------TFSL 48

Query: 216 GYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPN--WLLENNTKLESLSLVNDSLAGPFR 273
                 T    L+    L+  +L+ ++++G  P    L  ++ +L+SL L+  +L     
Sbjct: 49  ATLMPYTRLTQLN----LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL----- 99

Query: 274 LPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSS-FGNMNFLQ 332
                  +L +LDVS N     +P      L  L    +  N L  ++P         L+
Sbjct: 100 ------PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKN-FNLTKLSWLLLEDN 388
            L L+NN+LT E+P  L  G  NL+ L+L  N+L      K  F    L +  L  N
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 29/180 (16%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
                   L L +N L      T   L  +T L  L LD + L      +   +  +L  
Sbjct: 28  DLPKDTTILHLSENLLYTFSLAT---LMPYTRLTQLNLDRAEL------TKLQVDGTLPV 78

Query: 62  LSMIDCKVNGVVR-SQGFPHFKSLEYLDMNTACIALNASFLQIIGA----SMPFLKYLSL 116
           L  +D   N +           +L  LD++      N   L  +       +  L+ L L
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-----NR--LTSLPLGALRGLGELQELYL 131

Query: 117 SYFTFGTNSSRILDQGLC-PLVHLQELHMANNDLRGSLPW-CLANMTSLRTLDVSSNQLT 174
                  N  + L  GL  P   L++L +ANN+L   LP   L  + +L TL +  N L 
Sbjct: 132 KG-----NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 22/172 (12%)

Query: 443 PVAFCQLDSLQILGISDNNIS-----GSLPS----YLSYNRLNGSIPDRIDGLLRLSHLI 493
            +   Q++SL  + +++ N++         +     ++        P  I GL  L  L 
Sbjct: 37  NITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLR 94

Query: 494 LAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553
           +   ++  +    L GL  L LLD+S +     I    +         L  ++ IDLS N
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT--------LPKVNSIDLSYN 146

Query: 554 KLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG 605
             I DI P +  L  +++LN+  + +         +   +  L  +   + G
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 8/161 (4%)

Query: 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
           + SL+   ++   +   + +     + ++ L ++N H T      ++ G  NLE L +  
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 364 NNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLG 423
            ++          LT L+ L +  +   + I   ++    +  + L+ N     I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 424 NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG 464
            L  L+ + I  + +     +       L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 13/143 (9%)

Query: 486 LLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL 545
           +  L+++ LA+ N+     ++    + ++ L +++       P             LS L
Sbjct: 43  MNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNYNP--ISG--------LSNL 90

Query: 546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG 605
             + +    +  D  P +  LT +  L++SH+    +IL+    L  + S+DL +N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 606 KIPCQLVELNALVVFSVAYNNLS 628
            I   L  L  L   ++ ++ + 
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 28/206 (13%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
            +  L+++ L + + V ++   +    +++ L +NN + +   P  +  L+ L+ + I  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495
             +          L SL +L IS +    S+ + ++              L +++ + L+
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-------------TLPKVNSIDLS 144

Query: 496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
           +N    ++   L  L +L+ L++  +                                  
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDG--------------------------------- 170

Query: 556 IGDIPPQIGNLTRIQTLNLSHNNLTG 581
           + D    I +  ++  L      + G
Sbjct: 171 VHDYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 12/143 (8%)

Query: 489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGI 548
               +           +    +N L  + L++  +  L     +            +  +
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEY--------AHNIKDL 71

Query: 549 DLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP 608
            ++      +  P I  L+ ++ L +   ++T   +   + L  +  LD+ H+  +  I 
Sbjct: 72  TINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 609 CQLVELNALVVFSVAYNNLSGKI 631
            ++  L  +    ++YN     I
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVND 266
            L  ++L++     VT    + + + ++D+ +++I      P   +   + LE L ++  
Sbjct: 45  SLTYITLAN---INVTDLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGK 98

Query: 267 SLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFG 326
            +       +    SL LLD+S++     I  +I   LP ++S ++S N     I     
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDI-MPLK 156

Query: 327 NMNFLQILDLSNNHLTGEIP-EHLAIGCVNLEILVLSNNNL 366
            +  L+ L++  + +      E        L  L   +  +
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 55/199 (27%)

Query: 158 ANMTSLRTLDVSSNQLTGSISSSPL-------ILDAYNNEINAEITESHSLTAPNFQLKS 210
           A M SL  + +++  +T     + +        L   N            L+     L+ 
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT-NYNPISGLS----NLER 92

Query: 211 LSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAG 270
           L +                   +    + +           L   T L  L + + +   
Sbjct: 93  LRIMG---------------KDVTSDKIPN-----------LSGLTSLTLLDISHSAHDD 126

Query: 271 PFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI-----LPSLSSFNISMNALDGSIPSSF 325
                I++   +  +D+S N         I DI     LP L S NI  + +        
Sbjct: 127 SILTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHDY--RGI 177

Query: 326 GNMNFLQILDLSNNHLTGE 344
            +   L  L   +  + G+
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 51  SIASIFPS-LKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMP 109
           S A+I  + + SL+ I      V    G  +  +++ L +N      N + +    + + 
Sbjct: 34  STANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYNPI----SGLS 88

Query: 110 FLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVS 169
            L+ L +     G + +      L  L  L  L ++++    S+   +  +  + ++D+S
Sbjct: 89  NLERLRIM----GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 170 SNQLTGSISS-SPL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSS 215
            N     I     L     L+   + ++ +            +L  L   S
Sbjct: 145 YNGAITDIMPLKTLPELKSLNIQFDGVH-DYRGIEDFP----KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLS 63
            +SL  + L + N+T++       +    N++ LT+  +++H +    I+    +L+ L 
Sbjct: 43  MNSLTYITLANINVTDL-----TGIEYAHNIKDLTI--NNIHATNYNPISG-LSNLERLR 94

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDM-NTACIALNASFLQIIGASMPFLKYLSLSYFTFG 122
           ++   V    +        SL  LD+ ++A      + +     ++P +  + LSY    
Sbjct: 95  IMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKI----NTLPKVNSIDLSYNGAI 149

Query: 123 TNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTG 175
           T+        L  L  L+ L++  + +       + +   L  L   S  + G
Sbjct: 150 TDIM-----PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
           ++ L+ I L+    + D+   I     I+ L +++ + T    +  + L ++E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGK 98

Query: 602 KLNGKIPCQLVELNALVVFSVAYNNLSGKIPE 633
            +       L  L +L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.3 bits (193), Expect = 9e-16
 Identities = 51/303 (16%), Positives = 91/303 (30%), Gaps = 62/303 (20%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH 340
           S R+     +     IP+   D+  +       +  L      +F     L+ +++S N 
Sbjct: 10  SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 341 LTGEIPEHLAIGCVNLEILVLSNNN----LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQ 396
           +   I   +      L  + +   N    +    F    NL  L +LL+ +         
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIKHLPDV 122

Query: 397 SLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL-DSLQIL 455
                L    L + +N                    I  N        +F  L     IL
Sbjct: 123 HKIHSLQKVLLDIQDNI---------------NIHTIERN--------SFVGLSFESVIL 159

Query: 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQ-LCGLNQLQ 514
            ++ N I                I +      +L  L L+ NN   E+P     G +   
Sbjct: 160 WLNKNGIQ--------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNL 574
           +LD+S  ++H L     +N        L  L        K +    P +  L  +   +L
Sbjct: 206 ILDISRTRIHSLPSYGLEN--------LKKLRARSTYNLKKL----PTLEKLVALMEASL 253

Query: 575 SHN 577
           ++ 
Sbjct: 254 TYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 43/279 (15%), Positives = 80/279 (28%), Gaps = 57/279 (20%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
           +  EL      LR       +    L  +++S N +   I +                  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--------------- 75

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
             +L     +L  + +                 N L                   +N   
Sbjct: 76  -SNLP----KLHEIRIE--------------KANNLL-----------YINPEAFQNLPN 105

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPS-LSSFNISMNA 316
           L+ L + N  +     +         LLD+ +N     I       L        ++ N 
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 317 LDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE---GHMFSK 373
           +     S+F      ++    NN+L  E+P  +  G     IL +S   +     +    
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE- 223

Query: 374 NFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412
             NL KL      +    +++P +L K ++L    L   
Sbjct: 224 --NLKKLRARSTYNL---KKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 29/181 (16%), Positives = 55/181 (30%), Gaps = 26/181 (14%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSI-ASIFPSLKS 61
            F  L  + +  N++ E++        N   L  + +       + L  I    F +L +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRI----EKANNLLYINPEAFQNLPN 105

Query: 62  LSMIDCKVNG--VVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS-----MPFLKYL 114
           L  +     G   +      H      LD+       N + +  I  +           L
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-----NIN-IHTIERNSFVGLSFESVIL 159

Query: 115 SLSYFTFGTNSSRILDQGLCPLVHLQELH-MANNDLRGSLPWCLANMTSLRTLDVSSNQL 173
            L+      N  + +         L EL+   NN+L           +    LD+S  ++
Sbjct: 160 WLNK-----NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 174 T 174
            
Sbjct: 215 H 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 29/203 (14%)

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPV-AFCQLDSLQILGISDNN 461
             + L L +N LS    +    LT L+ + + +N L+  +P   F +L +L+ L      
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETL------ 90

Query: 462 ISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLS 519
                  +++ N+L  ++P  + D L+ L+ L L  N L+  +P ++   L +L  L L 
Sbjct: 91  -------WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLG 141

Query: 520 DNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNN 578
            N+L  L    FD         L+ L  + L  N+L   +P      LT ++TL L +N 
Sbjct: 142 YNELQSLPKGVFDK--------LTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQ 192

Query: 579 LTGTILSTFTNLRHIESLDLYHN 601
           L       F +L  ++ L L  N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 27/171 (15%)

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLIL 494
           N L      AF +L  L++L ++DN +               ++P  I   L  L  L +
Sbjct: 47  NKLSSLPSKAFHRLTKLRLLYLNDNKLQ--------------TLPAGIFKELKNLETLWV 92

Query: 495 AHNNLEGEVPVQL-CGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553
             N L+  +P+ +   L  L  L L  N+L  L P  FD+        L+ L+ + L  N
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------LTKLTYLSLGYN 143

Query: 554 KLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           +L   +P  +   LT ++ L L +N L       F  L  +++L L +N+L
Sbjct: 144 EL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 32/204 (15%)

Query: 303 ILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS 362
           I       ++  N L      +F  +  L++L L++N L   +P  +     NLE L ++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 363 NNNLE---GHMFSKNFNLTKLSWLLLEDNHFVEEIPQ----SLSKCLSLEGLHLNNNNLS 415
           +N L+     +F     L  L+ L L+ N   + +P     SL+K   L  L L  N L 
Sbjct: 94  DNKLQALPIGVFD---QLVNLAELRLDRNQL-KSLPPRVFDSLTK---LTYLSLGYNELQ 146

Query: 416 GKIPQWL-GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNR 474
             +P+ +   LT L+ + +  N L+     AF +L  L+ L + +N +            
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK----------- 194

Query: 475 LNGSIPDRI-DGLLRLSHLILAHN 497
               +P+   D L +L  L L  N
Sbjct: 195 ---RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 26/178 (14%)

Query: 4   FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSI-ASIFPSLKSL 62
            +    L L  N L+ + +      H  T L  L L+ +      LQ++ A IF  LK+L
Sbjct: 36  PADTKKLDLQSNKLSSLPSKA---FHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNL 87

Query: 63  SMIDCKVNG--VVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMP---FLKYLSLS 117
             +    N    +    F    +L  L ++      N    Q+   S+P   F     L+
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDR-----N----QL--KSLPPRVFDSLTKLT 136

Query: 118 YFTFGTNSSRILDQGLC-PLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
           Y + G N  + L +G+   L  L+EL + NN L+         +T L+TL + +NQL 
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 45/276 (16%), Positives = 99/276 (35%), Gaps = 40/276 (14%)

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
            L     +    ++  + +    +    +  L      ++  I   +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495
           N +    P     L  +  L +S N +               ++   I GL  +  L L 
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLK--------------NVSA-IAGLQSIKTLDLT 115

Query: 496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
              +    P  L GL+ LQ+L L  N++  + P             L+ L  + +   + 
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAG--------LTNLQYLSIGNAQ- 162

Query: 556 IGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN 615
           + D+ P + NL+++ TL    N ++   +S   +L ++  + L +N+++   P  L   +
Sbjct: 163 VSDLTP-LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTS 217

Query: 616 ALVVFSVAYNNLSGKIPEMTTQFATFN-ESNYKGNP 650
            L + ++    ++ +           N      G P
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 46/290 (15%), Positives = 94/290 (32%), Gaps = 38/290 (13%)

Query: 327 NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLE 386
            +     +    +++T  + +        +  L      +          L  L  L L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT--TIEGVQYLNNLIGLELK 71

Query: 387 DNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAF 446
           DN  + ++   L     +  L L+ N L       +  L  ++ + +    +    P   
Sbjct: 72  DNQ-ITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 447 CQLDSLQILGISDNNIS-----GSLPS----YLSYNRLNGSIPDRIDGLLRLSHLILAHN 497
             L +LQ+L +  N I+       L +     +   +++   P  +  L +L+ L    N
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 498 NLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
            +    P  L  L  L  + L +N++  + P    N         S L  + L+   +  
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LAN--------TSNLFIVTLTNQTITN 231

Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGK 606
                  NL      N+        I  +T ++     S +L  N  +  
Sbjct: 232 QPVFYNNNLV---VPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 61/322 (18%), Positives = 113/322 (35%), Gaps = 77/322 (23%)

Query: 156 CLANMTSLRTLDVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTAPNFQLKSL 211
               + +   +    + +T +++ + L     L A+   +   I     L      L  L
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQYLN----NLIGL 68

Query: 212 SLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGP 271
            L                 N++ D+               L+N TK+  L L  + L   
Sbjct: 69  ELKD---------------NQITDLAP-------------LKNLTKITELELSGNPLKNV 100

Query: 272 FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFL 331
               I   +S++ LD+++          I D+                   +    ++ L
Sbjct: 101 S--AIAGLQSIKTLDLTSTQ--------ITDV-------------------TPLAGLSNL 131

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV 391
           Q+L L  N +T  I   LA G  NL+ L + N  +     +   NL+KL+ L  +DN  +
Sbjct: 132 QVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNK-I 185

Query: 392 EEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDS 451
            +I   L+   +L  +HL NN +S   P  L N + L  + +    +          L  
Sbjct: 186 SDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVV 242

Query: 452 LQILGISDNNISGSLPSYLSYN 473
             +  +   + +   P+ +S N
Sbjct: 243 PNV--VKGPSGAPIAPATISDN 262

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 49/272 (18%), Positives = 111/272 (40%), Gaps = 44/272 (16%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSL-HISLLQSIASIFPSLKS 61
           + ++   +    +N+T+ VT       +   +  L+   + +  I  +Q       +L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT-----QADLDGITTLSAFGTGVTTIEGVQY----LNNLIG 67

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           L + D ++  +       +   +  L+++   +   ++      A +  +K L L+    
Sbjct: 68  LELKDNQITDL---APLKNLTKITELELSGNPLKNVSAI-----AGLQSIKTLDLT---- 115

Query: 122 GTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
              S++I D   L  L +LQ L++  N +    P  LA +T+L+ L + + Q++     +
Sbjct: 116 ---STQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 181 PL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDV 236
            L     L A +N+I+ +I+   SL      L  + L +   + ++    L + + L  V
Sbjct: 171 NLSKLTTLKADDNKIS-DISPLASLP----NLIEVHLKN---NQISDVSPLANTSNLFIV 222

Query: 237 DLSHIKM----NGEFPNWLLENNTKLESLSLV 264
            L++  +         N ++ N  K  S + +
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 52/266 (19%), Positives = 95/266 (35%), Gaps = 36/266 (13%)

Query: 132 GLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL----ILDAY 187
               L  +  L      +  ++   +  + +L  L++  NQ+T       L     L+  
Sbjct: 36  TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 188 NNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEF 247
            N +   ++    L      +K+L L+S     +T    L   + L+ + L   ++    
Sbjct: 94  GNPLK-NVSAIAGLQ----SIKTLDLTST---QITDVTPLAGLSNLQVLYLDLNQITNIS 145

Query: 248 PNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI---- 303
           P   L   T L+ LS+ N  ++     P+ +   L  L   +N         I DI    
Sbjct: 146 P---LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK--------ISDISPLA 192

Query: 304 -LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS 362
            LP+L   ++  N +  S  S   N + L I+ L+N  +T +   +     V   +   S
Sbjct: 193 SLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPS 250

Query: 363 NNNLEGHMFSKNFNLT--KLSWLLLE 386
              +     S N       L+W L  
Sbjct: 251 GAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 29/210 (13%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +   ++L  L L DN +T++       L N T +  L L  + L         S    L+
Sbjct: 59  VQYLNNLIGLELKDNQITDL-----APLKNLTKITELELSGNPL------KNVSAIAGLQ 107

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
           S+  +D     +          +L+ L ++   I  N S L    A +  L+YLS+    
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISPL----AGLTNLQYLSIGN-- 160

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
                   L   L  L  L  L   +N +    P  LA++ +L  + + +NQ++     +
Sbjct: 161 ---AQVSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA 214

Query: 181 PL----ILDAYNNEI-NAEITESHSLTAPN 205
                 I+   N  I N  +  +++L  PN
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 35/219 (15%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
                + TL      +T I     + +    NL    L+     I+ L  +     +L  
Sbjct: 38  ADLDGITTLSAFGTGVTTI-----EGVQYLNNLIG--LELKDNQITDLAPLK----NLTK 86

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           ++ ++   N +         +S++ LD+ +  I           A +  L+ L L     
Sbjct: 87  ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL-----AGLSNLQVLYLD---- 137

Query: 122 GTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
               ++I +   L  L +LQ L + N  +    P  LAN++ L TL    N+++     +
Sbjct: 138 ---LNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLA 192

Query: 181 PL----ILDAYNNEINAEITESHSLTAPNFQLKSLSLSS 215
            L     +   NN+I+ +++   + +     L  ++L++
Sbjct: 193 SLPNLIEVHLKNNQIS-DVSPLANTS----NLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 507 LCGLNQLQLLDLSDNKLHGLIPP----------CFDN--TALHERRVLSLLSGIDLSCNK 554
              L     +    + +   +             F    T +   + L+ L G++L  N+
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 555 LIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVEL 614
            I D+ P + NLT+I  L LS N L    +S    L+ I++LDL   ++    P  L  L
Sbjct: 75  -ITDLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGL 128

Query: 615 NALVVFSVAYNNLS 628
           + L V  +  N ++
Sbjct: 129 SNLQVLYLDLNQIT 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 29/217 (13%)

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPV-AFCQLDSLQILGISDNN 461
           S + L L   +L         NL  +  I +  +     +   +F  L  +  + I +  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 462 ISGSLPS------------YLSYNRLNGSIPDR--IDGLLRLSHLILAHNNLEGEVPVQ- 506
               +               +    L    PD   +        L +  N     +PV  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 507 LCGL-NQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-- 563
             GL N+   L L +N    +    F+ T L           + L+ NK +  I      
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA---------VYLNKNKYLTVIDKDAFG 201

Query: 564 GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600
           G  +    L++S  ++T        +L+ + + + + 
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 9/196 (4%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILDLSNN 339
           S + L +   + +  IP+     LP++S   +S++     + S SF N++ +  +++ N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNLEG-HMFSKNFNLTKLSWLLLEDNHFVEEIPQSL 398
                I          L+ L + N  L+     +K ++      L + DN ++  IP + 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 399 SKCLS--LEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN-HLEGPIPVAFCQLDS-LQI 454
            + L      L L NN  +  +  +  N T L  + + +N +L      AF  + S   +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 455 LGISDNNISGSLPSYL 470
           L +S  +++ +LPS  
Sbjct: 210 LDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQT 571
            Q L L +  L  +    F N        L  +S I +S +  +  +      NL+++  
Sbjct: 33  TQTLKLIETHLRTIPSHAFSN--------LPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 572 LNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKIP--CQLVELNALVVFSVAYNNLS 628
           + + +      I       L  ++ L +++  L    P   ++   +   +  +  N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

Query: 629 GKIPE 633
             IP 
Sbjct: 144 TSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 38/276 (13%), Positives = 81/276 (29%), Gaps = 61/276 (22%)

Query: 161 TSLRTLDVSSNQLTG--SISSSPLILDAYNNEINAEITES--HSLTAPNFQLKSLSLSSG 216
                  V+   +    S+  S   L      +   I      +L      +  + +S  
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHL-RTIPSHAFSNLP----NISRIYVSID 65

Query: 217 YEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAG-PFRLP 275
                      ++ +K+  +++ + +         L+    L+ L + N  L   P    
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
           ++S     +L++++N +   IP      L +                           L 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-----------------------TLTLK 162

Query: 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP 395
           L NN  T  +  +                          FN TKL  + L  N ++  I 
Sbjct: 163 LYNNGFT-SVQGYA-------------------------FNGTKLDAVYLNKNKYLTVID 196

Query: 396 Q-SLSKCLS-LEGLHLNNNNLSGKIPQWLGNLTGLQ 429
           + +     S    L ++  +++    + L +L  L 
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 67/448 (14%), Positives = 148/448 (33%), Gaps = 68/448 (15%)

Query: 30  NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDM 89
           +F +   +   +       +++++S +  L+ + +    V           FK+ + L +
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 90  NTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDL 149
           + +C   +   L  I A+   LK L L        S   L         L  L+++    
Sbjct: 138 S-SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 150 R---GSLPWCLANMTSLRTLDVSS----NQLTGSISSSP----LILDAYNNEINAEITES 198
                +L   +    +L++L ++      +L   +  +P    L    Y  E+  ++   
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 199 HSLTAPNF-QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
            S+      +L+ LS           P      ++L  ++LS+  +       LL    K
Sbjct: 257 LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315

Query: 258 LESLSLVND-------------------SLAGPFRLP---------------IHSHKSLR 283
           L+ L +++                     +                            L 
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375

Query: 284 LLDVSNNNFQGRIPAEIGDILPSLSSFNIS-----------MNALDGSIPSSFGNMNFLQ 332
            +              I    P+++ F +            +  LD    +   +   L+
Sbjct: 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL--EG--HMFSKNFNLTKLSWLLLEDN 388
            L LS   LT ++ E++      +E+L ++       G  H+ S   +L KL    + D 
Sbjct: 436 RLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE---IRDC 491

Query: 389 HFVEE-IPQSLSKCLSLEGLHLNNNNLS 415
            F ++ +  + SK  ++  L +++ ++S
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 70/592 (11%), Positives = 159/592 (26%), Gaps = 128/592 (21%)

Query: 29  HNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLD 88
           +         +   + +     ++   FP ++S+ +              PHF     + 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-----------PHFADFNLVP 86

Query: 89  MNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV----HLQELHM 144
                      +++ + +S  +L+ + L           + D  L  +     + + L +
Sbjct: 87  DG--WGGYVYPWIEAMSSSYTWLEEIRLK-------RMVVTDDCLELIAKSFKNFKVLVL 137

Query: 145 ANNDL--RGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLT 202
           ++ +      L    A   +L+ LD+  + +   +S   L                    
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWL----------------SHFP 180

Query: 203 APNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLS 262
                L SL++S                +++    L            L+     L+SL 
Sbjct: 181 DTYTSLVSLNISC-------------LASEVSFSALER----------LVTRCPNLKSLK 217

Query: 263 L---VNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI-----LPSLSSFNISM 314
           L   V           +     L  L       + R     G          L   +   
Sbjct: 218 LNRAVPLEKLATL---LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 315 NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKN 374
           +A+   +P+ +   + L  L+LS   +       L   C  L+ L + +           
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD----------- 323

Query: 375 FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
             +      +L             S C  L  L +  +      P       GL  + + 
Sbjct: 324 -YIEDAGLEVL------------ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370

Query: 435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLIL 494
              LE    + FC+        +++  +     +  +  R       R+  +   +   L
Sbjct: 371 CPKLE--SVLYFCR-------QMTNAALITIARNRPNMTRF------RLCIIEPKAPDYL 415

Query: 495 AHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHE-RRVLSLLSGIDLSCN 553
               L+      +     L+ L LS             +            +  + ++  
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLSG---------LLTDKVFEYIGTYAKKMEMLSVAFA 466

Query: 554 KLIGDIPPQIG-NLTRIQTLNLSH-NNLTGTILSTFTNLRHIESLDLYHNKL 603
                    +      ++ L +         +L+  + L  + SL +    +
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 58/400 (14%), Positives = 119/400 (29%), Gaps = 53/400 (13%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQEL-HNFTNLEYLTLDFSSLHIS--LLQSIASIFPSL 59
           +  +L  L L ++++ ++           +T+L  L +   +  +S   L+ + +  P+L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213

Query: 60  KSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYL-SLSY 118
           KSL +        + +        LE L        +       +  ++   K L  LS 
Sbjct: 214 KSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 119 FTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSI 177
           F     +       +C    L  L+++   ++   L   L     L+ L V        I
Sbjct: 273 FWDAVPAYLPAVYSVCS--RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-----I 325

Query: 178 SSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSS------GYEDGVT---FPKFLH 228
             + L                  L +    L+ L +             +T         
Sbjct: 326 EDAGL----------------EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369

Query: 229 HQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVS 288
              KLE V     +M       +  N   +    L       P       + +L  LD+ 
Sbjct: 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP------DYLTLEPLDIG 423

Query: 289 NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEH 348
                      I +    L   ++S    D            +++L ++    +     H
Sbjct: 424 F--------GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475

Query: 349 LAIGCVNLEILVLSN-NNLEGHMFSKNFNLTKLSWLLLED 387
           +  GC +L  L + +    +  + +    L  +  L +  
Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 47/338 (13%), Positives = 101/338 (29%), Gaps = 50/338 (14%)

Query: 300 IGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEIL 359
             D       +   +     ++ SS+     L+ + L    +T +  E +A    N ++L
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTW---LEEIRLKRMVVTDDCLELIAKSFKNFKVL 135

Query: 360 VLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP 419
           VLS+              +      +             + C +L+ L L  +++     
Sbjct: 136 VLSSCE----------GFSTDGLAAI------------AATCRNLKELDLRESDVDDVSG 173

Query: 420 QWLG----NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRL 475
            WL       T L  + I  + L   +        +L+ L     N+  SL   L+    
Sbjct: 174 HWLSHFPDTYTSLVSLNI--SCLASEV-----SFSALERLVTRCPNLK-SL--KLNRAVP 223

Query: 476 NGSIPDRIDGLLRLSHLILAH----NNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCF 531
              +   +    +L  L           +    + +      +L  LS            
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV------ 277

Query: 532 DNTALHERRVLSLLSGIDLSCNKLIGD-IPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL 590
                    V S L+ ++LS   +    +   +    ++Q L +        +    +  
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 591 RHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
           + +  L ++ ++     P   +    LV  S+    L 
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 469 YLSYNRLNGSIPDRID--GLLRLSHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNKLHG 525
            LS+N L   +        L  L  L+L+HN+L   +  +    +  L+ LDLS N LH 
Sbjct: 45  DLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 526 LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTIL 584
           L    F +        L  L  + L  N  I  +      ++ ++Q L LS N ++   +
Sbjct: 103 LDEFLFSD--------LQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 585 STFTN---LRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626
               +   L  +  LDL  NKL       L +L A V   +  +N
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 24/229 (10%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLED 387
             +LDLS+N+L+    E       NL  L+LS+N+L       F     +  L +L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 388 NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
           NH         S   +LE L L NN++         ++  LQ + + +N +         
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA-HNNLEGEVPVQ 506
             + L  L +            LS N+L       +  L       L  HNN     P++
Sbjct: 158 DGNKLPKLML----------LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN-----PLE 202

Query: 507 -LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNK 554
             C L QL        +L  ++    D   +H +++ ++ S    +C++
Sbjct: 203 CDCKLYQL-FSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSE 250

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 72.3 bits (177), Expect = 3e-13
 Identities = 74/462 (16%), Positives = 127/462 (27%), Gaps = 78/462 (16%)

Query: 28  LHNFTNLEYLTL--------------DFSSLHISLLQSIASIFPSLKSLSMIDCKV-NGV 72
              F NL  L L              ++       +  I++    LKS+      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 73  VRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQG 132
           +          LE L ++  C       L  I      +K L +   +F     + L + 
Sbjct: 129 LDRLAKARADDLETLKLD-KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 133 LCPLVHLQELHMANNDLRG----SLPWCLANMTSLRTLDVSSNQ---LTGSISSSPLILD 185
                 L+ L+    +        L     N  SL ++ V   +   L G   ++  + +
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247

Query: 186 AYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNG 245
                +N +I          F  K   L   Y      P       ++  +DL +  +  
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 246 EFPNWLLENNTKLESLSLVND-------------------SLAGPFRLPIHSH------- 279
           E    L++    LE L   N                     +                  
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 280 ----------KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN---------ISMNALDGS 320
                     + L  + V  ++        IG  L +L  F          I+   LD  
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427

Query: 321 IPSSFGNMNFLQILDLSNN--HLTGEIPEHLAIGCVNLEILVLSNNNL--EG--HMFSKN 374
           + S       L+          LT     ++     N+  ++L       EG        
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487

Query: 375 FNLTKLSWLLLEDNHFVEE-IPQSLSKCLSLEGLHLNNNNLS 415
            NL KL    +    F E  I  +++K  SL  L +     S
Sbjct: 488 PNLQKLE---MRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 65/584 (11%), Positives = 154/584 (26%), Gaps = 97/584 (16%)

Query: 32  TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNT 91
            +     +  +  + +    ++  FP+L+SL +           +G P       +  N 
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKL-----------KGKPRAAMFNLIPEN- 95

Query: 92  ACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG 151
                   ++  I  ++  LK +              L +       L+ L +       
Sbjct: 96  -WGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD--DLETLKLDKCSGFT 152

Query: 152 --SLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLK 209
              L   + +   ++TL +  +  +       L                H L   N  L+
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFS-EKDGKWL----------------HELAQHNTSLE 195

Query: 210 SLSLSSGYEDGVTFP---KFLHHQNKLEDVDLSH-IKMNGEFPNWLLENNTKLESLSLVN 265
            L+        ++         +   L  V +     +          N  +    SL  
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255

Query: 266 DSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL-DGSIPSS 324
           D       + +   + L  L +S           +      +   ++    L      + 
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNE--MPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL 384
                 L++L+   N +     E LA  C  L+ L +     E  M  +   +++   + 
Sbjct: 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372

Query: 385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHLEG 440
           L               C  LE + +  ++++ +    I  +L NL   + +++       
Sbjct: 373 L------------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL------- 413

Query: 441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLE 500
                  +  +   L     ++         +            GL  +           
Sbjct: 414 ----DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ--------- 460

Query: 501 GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD-I 559
                       ++ + L             D   +   R    L  +++         I
Sbjct: 461 --------YSPNVRWMLLGYVGES-------DEGLMEFSRGCPNLQKLEMRGCCFSERAI 505

Query: 560 PPQIGNLTRIQTLNLSHNNLTGT---ILSTFTNLRHIESLDLYH 600
              +  L  ++ L +     + T   ++       +IE +    
Sbjct: 506 AAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 58/419 (13%), Positives = 115/419 (27%), Gaps = 42/419 (10%)

Query: 30  NFTNLEYLTLDF-SSLHISLLQSIASIFPSLKSLSMIDCKV--NGVVRSQGFP-HFKSLE 85
              +LE L LD  S      L SI +    +K+L M +                H  SLE
Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195

Query: 86  YLD-MNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHM 144
            L+   T    ++   L+ I  +   L  + +  F           +    L       +
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG--FFKAAANLEEFCGGSL 253

Query: 145 ANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL-----ILDAYNNEINAEITESH 199
             +         L     L  L +S           P       LD     +  E   + 
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 200 SLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNW--------- 250
               PN  L+ L   +   D         +  +L+ + +          +          
Sbjct: 314 IQKCPN--LEVLETRNVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370

Query: 251 --LLENNTKLESLSL----VNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP-----AE 299
             L +   +LE +++    + +         + +    RL+ +        +P       
Sbjct: 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430

Query: 300 IGDILPSLSSFNISMNAL---DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNL 356
           +      L  F   +      D  +         ++ + L     + E     + GC NL
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490

Query: 357 EILVLSNNNL-EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSK---CLSLEGLHLNN 411
           + L +      E  + +    L  L +L ++           +       ++E +    
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 47/242 (19%), Positives = 92/242 (38%), Gaps = 37/242 (15%)

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
              +     L+     + +    ++  S++ +  NN+++   +   +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495
           N L    P     L +L  L + +N +                +   +  L +L  L L 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVK--------------DL-SSLKDLKKLKSLSLE 120

Query: 496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
           HN +       L  L QL+ L L +NK+  +               L+ L  + L  N+ 
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDITV--LSR--------LTKLDTLSLEDNQ- 167

Query: 556 IGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN 615
           I DI P +  LT++Q L LS N+++   L     L++++ L+L+  +   K       L 
Sbjct: 168 ISDIVP-LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 616 AL 617
             
Sbjct: 225 VP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 51/295 (17%), Positives = 105/295 (35%), Gaps = 42/295 (14%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF 390
               +L    +T  + ++      +++ ++ +N++++         L  ++ L L  N  
Sbjct: 26  TIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNK- 79

Query: 391 VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLD 450
           + +I   L+   +L  L L+ N +   +   L +L  L+ + +  N +     +    L 
Sbjct: 80  LTDIK-PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLV--HLP 134

Query: 451 SLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGL 510
            L+ L + +N I+               I   +  L +L  L L  N +   VP  L GL
Sbjct: 135 QLESLYLGNNKIT--------------DITV-LSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 511 NQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ 570
            +LQ L LS N +          + L     L  L  ++L   + +        NL    
Sbjct: 178 TKLQNLYLSKNHI----------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 571 TLNLSHNNLTG----TILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFS 621
           T+  +  +L      +    +        L  + N+++      +    A   F 
Sbjct: 228 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 49/299 (16%), Positives = 99/299 (33%), Gaps = 65/299 (21%)

Query: 132 GLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL-------IL 184
                    + ++    +  ++      + S+  +  +++ +    S   +        L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 185 DAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMN 244
               N++  +I    +L      L  L L                 NK++D+        
Sbjct: 74  FLNGNKLT-DIKPLANLK----NLGWLFLDE---------------NKVKDLSS------ 107

Query: 245 GEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI- 303
                  L++  KL+SLSL ++ ++      +     L  L + NN         I DI 
Sbjct: 108 -------LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNK--------ITDIT 150

Query: 304 ----LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEIL 359
               L  L + ++  N +  S       +  LQ L LS NH++ ++   LA G  NL++L
Sbjct: 151 VLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLRA-LA-GLKNLDVL 205

Query: 360 VLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI 418
            L +        +   NL   + +   D   V     S         +  +    + ++
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 52/281 (18%), Positives = 105/281 (37%), Gaps = 37/281 (13%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
           +F+      L   ++T+ VT      +   +++   +  ++  I  +Q I      L ++
Sbjct: 22  AFAETIKDNLKKKSVTDAVT-----QNELNSIDQ--IIANNSDIKSVQGIQ----YLPNV 70

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFG 122
           + +    N +   +   + K+L +L ++   +  + S L      +  LK LSL      
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLE----- 120

Query: 123 TNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT--GSISS 179
              + I D  GL  L  L+ L++ NN +       L+ +T L TL +  NQ++    ++ 
Sbjct: 121 --HNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAG 176

Query: 180 SPLI--LDAYNNEINAEITESHSLTAPNFQLKSLSLSS--GYEDGVTFPKFLHHQNKLED 235
              +  L    N I+ ++     L      L  L L S       +     L   N +++
Sbjct: 177 LTKLQNLYLSKNHIS-DLRALAGLK----NLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPI 276
            D S +       +   E       L    + ++  F  P+
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 272

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 24/195 (12%)

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI-----LPS 306
           ++    +  L L  + L      P+ + K+L  L +  N         + D+     L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 307 LSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL 366
           L S ++  N +  S  +   ++  L+ L L NN +T      L+     L+ L L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLS-RLTKLDTLSLEDNQI 168

Query: 367 EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLT 426
                     LTKL  L L  NH + ++ ++L+   +L+ L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 427 GLQYIIIPENHLEGP 441
               +   +  L  P
Sbjct: 225 VPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 26/197 (13%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +    ++  L L  N LT+I     + L N  NL +  L      +  L S+      LK
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI-----KPLANLKNLGW--LFLDENKVKDLSSLK----DLK 112

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
            L  +  + NG+    G  H   LE L +    I  + + L    + +  L  LSL    
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLE--- 164

Query: 121 FGTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
                ++I D   L  L  LQ L+++ N +       LA + +L  L++ S +      +
Sbjct: 165 ----DNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPIN 218

Query: 180 SPLILDAYNNEINAEIT 196
               L   N   N + +
Sbjct: 219 HQSNLVVPNTVKNTDGS 235

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 53/303 (17%), Positives = 109/303 (35%), Gaps = 59/303 (19%)

Query: 51  SIASIFP--SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASM 108
            I  IF   +       + K   V  +       S++ +  N + I  +   +Q     +
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQ----YL 67

Query: 109 PFLKYLSLSYFTFGTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLD 167
           P +  L L+        +++ D + L  L +L  L +  N ++      L ++  L++L 
Sbjct: 68  PNVTKLFLNG-------NKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS 118

Query: 168 VSSNQLTGSISS-SPLI----LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT 222
           +  N ++  I+    L     L   NN+I  +IT    LT    +L +LSL         
Sbjct: 119 LEHNGIS-DINGLVHLPQLESLYLGNNKIT-DITVLSRLT----KLDTLSLED------- 165

Query: 223 FPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL 282
                   N++ D+               L   TKL++L L  + ++      +   K+L
Sbjct: 166 --------NQISDIV-------------PLAGLTKLQNLYLSKNHISDL--RALAGLKNL 202

Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
            +L++ +     +      +++   +  N   + +   I S  G+     +        T
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK-WHLPEFT 261

Query: 343 GEI 345
            E+
Sbjct: 262 NEV 264

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 27/280 (9%)

Query: 362 SNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQW 421
           +  ++E          + +    L      +++PQ   + +           L    P+ 
Sbjct: 281 APLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC 340

Query: 422 L----GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG 477
                     L    +        +         LQ L   +     ++   +       
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 478 SIPDRIDGL--------LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPP 529
              + +           +R ++L    +    E  V       +++L L+   L      
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL------ 453

Query: 530 CFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTN 589
               T L     L L++ +DLS N+L   +PP +  L  ++ L  S N L    +    N
Sbjct: 454 ----TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVAN 506

Query: 590 LRHIESLDLYHNKLNG-KIPCQLVELNALVVFSVAYNNLS 628
           L  ++ L L +N+L        LV    LV+ ++  N+L 
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 37/243 (15%), Positives = 83/243 (34%), Gaps = 35/243 (14%)

Query: 152 SLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSL 211
                 A    L   ++S  + T         L++       E      L      +++L
Sbjct: 340 CWCRDSATDEQLFRCELSVEKST----VLQSELESCKELQELEPENKWCLLTIILLMRAL 395

Query: 212 SLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGP 271
                 ++       L + + L+ VD        +  +  L                   
Sbjct: 396 DPLLYEKET------LQYFSTLKAVDPMRAAYLDDLRSKFLLE----------------- 432

Query: 272 FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFL 331
             +    +  +R+L +++ +    +     + L  ++  ++S N L  ++P +   +  L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNHF 390
           ++L  S+N L   +   +A     L+ L+L NN L+     +   +  +L  L L+ N  
Sbjct: 489 EVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

Query: 391 VEE 393
            +E
Sbjct: 546 CQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 7e-07
 Identities = 48/322 (14%), Positives = 94/322 (29%), Gaps = 17/322 (5%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLK 60
           +G     + LC +  +  E   +              TL        L     +     +
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 61  SLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFT 120
              +  C +     +   P          + +         +             L    
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355

Query: 121 FGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
                S +L   L     LQEL   N     ++   +  +  L     +    +   +  
Sbjct: 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415

Query: 181 PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSH 240
           P+     ++  +  + E+  L      ++ L L+      +T    L     +  +DLSH
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH---KDLTVLCHLEQLLLVTHLDLSH 472

Query: 241 IKMNGEFPNWLLENNTKLESLSLVN---DSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297
            ++    P  L      LE L   +   +++ G     + +   L+ L + NN  Q    
Sbjct: 473 NRLR-ALPPAL-AALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQ--S 523

Query: 298 AEIGDI--LPSLSSFNISMNAL 317
           A I  +   P L   N+  N+L
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 21/190 (11%)

Query: 6   SLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSL-HISLLQSIASIFPSLKSLSM 64
           S+    ++ + L         E  N   L  + L   +L  +   +     F +LK++  
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 65  IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIG--ASMPFLKYLSLSY---- 118
           +       +RS+       L+    +   + L    L ++     +  + +L LS+    
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR 476

Query: 119 ---FTFGTNSS-RILD---------QGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLR 164
                        +L           G+  L  LQEL + NN L+  +    L +   L 
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 165 TLDVSSNQLT 174
            L++  N L 
Sbjct: 537 LLNLQGNSLC 546

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 14/136 (10%)

Query: 469 YLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNKLHGL 526
            L  N +   IP        +L  + L++N +  E+      GL  L  L L  NK+  L
Sbjct: 38  RLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILS 585
               F+         L  L  + L+ NK+   +      +L  +  L+L  N L      
Sbjct: 96  PKSLFEG--------LFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 586 TFTNLRHIESLDLYHN 601
           TF+ LR I+++ L  N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
           + L  N ++   P       +L+ +DLS+N++  L P  F          L  L+ + L 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--------LRSLNSLVLY 88

Query: 552 CNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
            NK+  ++P  +   L  +Q L L+ N +    +  F +L ++  L LY NKL
Sbjct: 89  GNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 322 PSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE---GHMFSKNFNLT 378
           P +F     L+ +DLSNN ++ E+      G  +L  LVL  N +      +F     L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG---LF 104

Query: 379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN 436
            L  LLL  N        +     +L  L L +N L          L  +Q + + +N
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNN---NLEGHMFSKNFNLTKLSWLLLEDN 388
             + L  N +   IP         L  + LSNN    L    F     L  L+ L+L  N
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 389 HFVEEIPQSLSKCL-SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
             + E+P+SL + L SL+ L LN N ++        +L  L  + + +N L+      F 
Sbjct: 91  K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 448 QLDSLQILGISDN 460
            L ++Q + ++ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 285 LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILDLSNNHLTG 343
           + +  N  +  IP         L   ++S N +   +   +F  +  L  L L  N +T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 344 EIPEHLAIGCVNLEILVLSNNNLEG---HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSK 400
           E+P+ L  G  +L++L+L+ N +       F     L  L+ L L DN        + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD---LHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 401 CLSLEGLHLNNN 412
             +++ +HL  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 36/153 (23%), Positives = 53/153 (34%), Gaps = 41/153 (26%)

Query: 383 LLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPI 442
           + LE N      P + S    L  + L+NN +S                 +  +      
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----------------LAPD------ 74

Query: 443 PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEG 501
             AF  L SL  L +  N I+               +P  + +GL  L  L+L  N +  
Sbjct: 75  --AFQGLRSLNSLVLYGNKIT--------------ELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 502 EVPVQL-CGLNQLQLLDLSDNKLHGLIPPCFDN 533
            + V     L+ L LL L DNKL  +    F  
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 61/349 (17%), Positives = 100/349 (28%), Gaps = 82/349 (23%)

Query: 111 LKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDL--RG--SLPWCLANMTSLRTL 166
           ++  SL      T   + +   L     ++E+ ++ N +       L   +A+   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 167 DVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAP----NFQLKSLSLSSGYEDGVT 222
           + S                     +  EI E+  L         +L ++ LS        
Sbjct: 66  EFSDIFT---------------GRVKDEIPEALRLLLQALLKCPKLHTVRLSD------- 103

Query: 223 FPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL-------------A 269
                   N         +          L  +T LE L L N+ L              
Sbjct: 104 --------NAFGPTAQEPLID-------FLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 270 GPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDIL---PSLSSFNISMNAL-----DGSI 321
                   +   LR +    N  +     E          L +  +  N +     +  +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 322 PSSFGNMNFLQILDLSNNHLTGEIPEHLAIG---CVNLEILVLSNNNLE-------GHMF 371
                    L++LDL +N  T      LAI      NL  L L++  L           F
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 372 SKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL-----SLEGLHLNNNNLS 415
           SK  N   L  L L+ N    +  ++L   +      L  L LN N  S
Sbjct: 269 SKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 62/408 (15%), Positives = 116/408 (28%), Gaps = 104/408 (25%)

Query: 157 LANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSS- 215
           +A   S+    +  + +T                   +     ++   +  +K + LS  
Sbjct: 1   MAR-FSIEGKSLKLDAIT-----------------TEDEKSVFAVLLEDDSVKEIVLSGN 42

Query: 216 --GYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL---------LENNTKLESLSL- 263
             G E      + +  +  LE  + S I                   L    KL ++ L 
Sbjct: 43  TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102

Query: 264 ---VNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS 320
                 +   P    +  H  L  L + NN    +  A+I   L  L            +
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL------------A 150

Query: 321 IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG---CVNLEILVLSNNNLE--------GH 369
           +     N   L+ +    N L     +  A        L  + +  N +           
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 370 MFSKNFNLTKLSWLLLEDNHF----VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL 425
             +    L  L    L+DN F       +  +L    +L  L LN+  LS +        
Sbjct: 211 GLAYCQELKVLD---LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-------- 259

Query: 426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG----SLPSYLSYNRLNGSIPD 481
            G   ++   +           +   LQ L +  N I      +L + +     +     
Sbjct: 260 -GAAAVV---DAFSK------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD----- 304

Query: 482 RIDGLLRLSHLILAHNNL--EGEVPVQLCGL----NQLQLLDLSDNKL 523
                  L  L L  N    E +V  ++  +     + +L +L D + 
Sbjct: 305 -------LLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 65/354 (18%), Positives = 111/354 (31%), Gaps = 99/354 (27%)

Query: 306 SLSSFNISMNALDG----SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG---CVNLEI 358
           S+   ++ ++A+      S+ +     + ++ + LS N +  E    L+       +LEI
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 359 LVLSNNNLE-------------GHMFSKNFNLTKLSWLLLEDNHF----VEEIPQSLSKC 401
              S+                      K   L  +    L DN F     E +   LSK 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR---LSDNAFGPTAQEPLIDFLSKH 121

Query: 402 LSLEGLHLNNNNLS-------------GKIPQWLGNLTGLQYIIIPENHLEGP----IPV 444
             LE L+L+NN L                + +   N   L+ II   N LE         
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 445 AFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP 504
            F     L  + +  N I                     +G+  L    LA+        
Sbjct: 182 TFQSHRLLHTVKMVQNGIRP-------------------EGIEHLLLEGLAYC------- 215

Query: 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL---LSGIDLSCNKL------ 555
                  +L++LDL DN             +      L     L  + L+   L      
Sbjct: 216 ------QELKVLDLQDNTFT-------HLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262

Query: 556 -IGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF-----TNLRHIESLDLYHNKL 603
            + D   ++ N+  +QTL L +N +    + T        +  +  L+L  N+ 
Sbjct: 263 AVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 47/310 (15%), Positives = 98/310 (31%), Gaps = 72/310 (23%)

Query: 106 ASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLR----------GSLPW 155
                +K + LS  T GT ++R L + +     L+    ++                L  
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 156 CLANMTSLRTLDVSSNQLTGSISSSPL-----------ILDAYNNEINAE---------- 194
            L     L T+ +S N   G  +  PL            L  +NN +  +          
Sbjct: 89  ALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 195 ITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLEN 254
               +        L+S+                   N+LE+  +       +      ++
Sbjct: 148 ELAVNKKAKNAPPLRSIICGR---------------NRLENGSMKEW---AK----TFQS 185

Query: 255 NTKLESLSLVNDSL-----AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDIL---PS 306
           +  L ++ +V + +            +   + L++LD+ +N F     + +   L   P+
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 307 LSSFNISMNALDG----SIPSSFGNMNF--LQILDLSNNHLTGE----IPEHLAIGCVNL 356
           L    ++   L      ++  +F  +    LQ L L  N +  +    +   +     +L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 357 EILVLSNNNL 366
             L L+ N  
Sbjct: 306 LFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 45/236 (19%)

Query: 402 LSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHL--EG--PIPVAFCQLDSLQ 453
            S+EG  L  + ++ +    +   L     ++ I++  N +  E    +         L+
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 454 ILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLR-------LSHLILAHNNLEGEVPVQ 506
           I   SD              R+   IP+ +  LL+       L  + L+ N         
Sbjct: 64  IAEFSDIFT----------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 507 LCGL----NQLQLLDLSDNKL-----HGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
           L         L+ L L +N L       +     +     + +    L  I    N+ + 
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LE 172

Query: 558 D-----IPPQIGNLTRIQTLNLSHNNLT-----GTILSTFTNLRHIESLDLYHNKL 603
           +           +   + T+ +  N +        +L      + ++ LDL  N  
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 28/200 (14%)

Query: 3   SFSSLNTLCLMDNNLTEI-VTTTTQELHNFTNLEYLTL------DFSSLHISLLQSIASI 55
              S+  + L  N +        ++ + +  +LE                   L+ +   
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 56  F---PSLKSLSMIDCKV--NGVVR-SQGFPHFKSLEYLDMNTACI----------ALNAS 99
               P L ++ + D                    LE+L ++   +          AL   
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 100 FLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLR-----GSLP 154
            +     + P L+ +          S +   +       L  + M  N +R       L 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 155 WCLANMTSLRTLDVSSNQLT 174
             LA    L+ LD+  N  T
Sbjct: 210 EGLAYCQELKVLDLQDNTFT 229

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 469 YLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI 527
            L+ N         I   L +L  +  ++N +         G + +  + L+ N+L  + 
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97

Query: 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILST 586
              F          L  L  + L  N++   +       L+ ++ L+L  N +T      
Sbjct: 98  HKMFKG--------LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 587 FTNLRHIESLDLYHN 601
           F  L  + +L+L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 509 GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLT 567
            L QL+ ++ S+NK+  +    F+          S ++ I L+ N+L  ++  ++   L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEG--------ASGVNEILLTSNRLE-NVQHKMFKGLE 105

Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
            ++TL L  N +T     +F  L  +  L LY N++
Sbjct: 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 285 LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE 344
           L ++NN F       I   LP L   N S N +      +F   + +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 345 IPEHLAIGCVNLEILVLSNNNLE---GHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKC 401
           +   +  G  +L+ L+L +N +       F     L+ +  L L DN      P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 402 LSLEGLHLNNN 412
            SL  L+L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNN---NLEGHMFSKNFNLTKLSWLLLEDN 388
             L L+NN  T      +      L  +  SNN   ++E   F      + ++ +LL  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 389 HFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQ 448
                  +      SL+ L L +N ++         L+ ++ + + +N +    P AF  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 449 LDSLQILGISDN 460
           L SL  L +  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 514 QLLDLSDNKLHGLIPP-CFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQT 571
             L L++N+   L     F          L  L  I+ S NK I DI        + +  
Sbjct: 35  AELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNK-ITDIEEGAFEGASGVNE 85

Query: 572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           + L+ N L       F  L  +++L L  N++
Sbjct: 86  ILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 38/230 (16%), Positives = 80/230 (34%), Gaps = 40/230 (17%)

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
            L       L     V ++  S  +   ++  + +N+N+   +   +   T L+ + +  
Sbjct: 17  GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSH 72

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL--LRLSHLI 493
           N +    P     L  L+ L ++ N +                    ++G+    LS L 
Sbjct: 73  NQISDLSP--LKDLTKLEELSVNRNRLK------------------NLNGIPSACLSRLF 112

Query: 494 LAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553
           L +N L       L  L  L++L + +NKL           ++     LS L  +DL  N
Sbjct: 113 LDNNELRDTDS--LIHLKNLEILSIRNNKL----------KSIVMLGFLSKLEVLDLHGN 160

Query: 554 KLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           + I +    +  L ++  ++L+        +     L    ++     + 
Sbjct: 161 E-ITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 36/220 (16%)

Query: 409 LNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS----- 463
                ++   P     L       + +  +   +     +L  +Q     ++NI      
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGM 59

Query: 464 GSLPS----YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQL--LD 517
               +    +LS+N+++  +   +  L +L  L +  N L+      L G+    L  L 
Sbjct: 60  QFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLF 112

Query: 518 LSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHN 577
           L +N+L         +        L  L  + +  NK +  I   +G L++++ L+L  N
Sbjct: 113 LDNNELRDTDS--LIH--------LKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGN 160

Query: 578 NLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617
            +T       T L+ +  +DL   K   +      EL   
Sbjct: 161 EITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 25/196 (12%)

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI-----LPS 306
            +  + +++ +  N ++       +    +L+ L +S+N         I D+     L  
Sbjct: 37  QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ--------ISDLSPLKDLTK 86

Query: 307 LSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL 366
           L   +++ N L     +   +   L  L L NN L     + L     NLEIL + NN L
Sbjct: 87  LEELSVNRNRL--KNLNGIPSAC-LSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKL 140

Query: 367 EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLT 426
           +         L+KL  L L  N  +      L++   +  + L       +  ++   L 
Sbjct: 141 K--SIVMLGFLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELY 196

Query: 427 GLQYIIIPENHLEGPI 442
               +  P+     P 
Sbjct: 197 ITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 32/209 (15%)

Query: 3   SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
             ++     L   ++T++V+         + ++    +  + +I  L  +        +L
Sbjct: 17  GLANAVKQNLGKQSVTDLVS-----QKELSGVQ--NFNGDNSNIQSLAGMQ----FFTNL 65

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFG 122
             +    N +           LE L +N   +        + G     L  L L      
Sbjct: 66  KELHLSHNQISDLSPLKDLTKLEELSVNRNRLK------NLNGIPSACLSRLFLDN---- 115

Query: 123 TNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
              + + D   L  L +L+ L + NN L+ S+   L  ++ L  LD+  N++T +   + 
Sbjct: 116 ---NELRDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGGLTR 170

Query: 182 L----ILDAYNNEI-NAEITESHSLTAPN 205
           L     +D    +  N  +     L   N
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 32/271 (11%), Positives = 84/271 (30%), Gaps = 59/271 (21%)

Query: 132 GLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLI----LDAY 187
               L +  + ++    +   +      ++ ++  +  ++ +              L   
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS 71

Query: 188 NNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEF 247
           +N+I+ +++    LT    +L+ LS++                N+L++++          
Sbjct: 72  HNQIS-DLSPLKDLT----KLEELSVNR---------------NRLKNLNGI-------- 103

Query: 248 PNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI---- 303
                  +  L  L L N+ L       +   K+L +L + NN         +  I    
Sbjct: 104 ------PSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNK--------LKSIVMLG 147

Query: 304 -LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS 362
            L  L   ++  N +  +       +  +  +DL+      E  ++     +   +    
Sbjct: 148 FLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 363 NNNLEGHMFSKNFNLTK--LSWLLLEDNHFV 391
              +  +  S   +     + W L      V
Sbjct: 206 GRWISPYYISNGGSYVDGCVLWELPVYTDEV 236

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 42/248 (16%), Positives = 88/248 (35%), Gaps = 37/248 (14%)

Query: 28  LHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYL 87
                N      +     ++ L S       L  +   +   + +    G   F +L+ L
Sbjct: 15  DPGLANAV--KQNLGKQSVTDLVSQKE----LSGVQNFNGDNSNIQSLAGMQFFTNLKEL 68

Query: 88  DMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANN 147
            ++   I+ + S L      +  L+ LS++        +R+ +    P   L  L + NN
Sbjct: 69  HLSHNQIS-DLSPL----KDLTKLEELSVNR-------NRLKNLNGIPSACLSRLFLDNN 116

Query: 148 DLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL----ILDAYNNEINAEITESHSLTA 203
           +LR +    L ++ +L  L + +N+L   +    L    +LD + NEI         L  
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT-NTGGLTRLK- 172

Query: 204 PNFQLKSLSLSS--GYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESL 261
              ++  + L+      + V +   L+  N ++D D   I        + + N       
Sbjct: 173 ---KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI------SPYYISNGGSYVDG 223

Query: 262 SLVNDSLA 269
            ++ +   
Sbjct: 224 CVLWELPV 231

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 41/136 (30%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNL---EGEVPVQLCGLNQLQLLDLSDNKLHG 525
           YL  N++    P   D L+ L  L L  N L      V   L    QL +LDL  N+L  
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---TQLTVLDLGTNQLTV 102

Query: 526 LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS 585
           L    FD         L  L  + + CNKL  ++P  I  LT +  L L  N L      
Sbjct: 103 LPSAVFDR--------LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHG 153

Query: 586 TFTNLRHIESLDLYHN 601
            F  L  +    L+ N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 24/150 (16%)

Query: 405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG 464
           + L+L++N ++   P    +L  L+ + +  N L       F  L  L +L         
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL--------- 93

Query: 465 SLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKL 523
                L  N+L   +P  + D L+ L  L +  N L  E+P  +  L  L  L L  N+L
Sbjct: 94  ----DLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

Query: 524 HGLIPPCFDNTALHERRVLSLLSGIDLSCN 553
             +    FD         LS L+   L  N
Sbjct: 148 KSIPHGAFDR--------LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 38/152 (25%)

Query: 315 NALDGSIPSSFGNMNFLQILDLSNNHLT---GEIPEHLAIGCVNLEILVLSNN---NLEG 368
           N +    P  F ++  L+ L L +N L      + + L      L +L L  N    L  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTVLPS 105

Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGL 428
            +F +   L  L  L +  N    E+P+ + +   L  L L+ N L              
Sbjct: 106 AVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKS------------ 149

Query: 429 QYIIIPENHLEGPIPVAFCQLDSLQILGISDN 460
               IP          AF +L SL    +  N
Sbjct: 150 ----IPHG--------AFDRLSSLTHAYLFGN 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 47/198 (23%)

Query: 405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG 464
           E L L +  L+         LT L ++ +  N L+      F  L  L  LG+++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 465 SLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH 524
           SLP           + D                            L QL  L L  N+L 
Sbjct: 97  SLPL---------GVFDH---------------------------LTQLDKLYLGGNQLK 120

Query: 525 GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTI 583
            L    FD         L+ L  + L+ N+L   IP      LT +QTL+LS N L    
Sbjct: 121 SLPSGVFDR--------LTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171

Query: 584 LSTFTNLRHIESLDLYHN 601
              F  L  ++++ L+ N
Sbjct: 172 HGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP 528
            L    L         GL +L+ L L +N L+         L +L  L L++N+L  L  
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 529 PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTF 587
             FD+        L+ L  + L  N+L   +P  +   LT+++ L L+ N L       F
Sbjct: 101 GVFDH--------LTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151

Query: 588 TNLRHIESLDLYHNKL 603
             L ++++L L  N+L
Sbjct: 152 DKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 19/171 (11%)

Query: 354 VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL-SLEGLHLNNN 412
            + E L L +  L     +    LTKL+WL L+ N   + +   +   L  L  L L NN
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANN 93

Query: 413 NLSGKIPQWL-GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLS 471
            L+  +P  +  +LT L  + +  N L+      F +L  L+ L              L+
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL-------------RLN 139

Query: 472 YNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN 521
            N+L  SIP    D L  L  L L+ N L+         L +LQ + L  N
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
           L L    L         GL +L  L+L  N+L  L    FD+        L+ L  + L+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--------LTELGTLGLA 91

Query: 552 CNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
            N+L   +P  +  +LT++  L L  N L       F  L  ++ L L  N+L
Sbjct: 92  NNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 50/311 (16%), Positives = 97/311 (31%), Gaps = 57/311 (18%)

Query: 157 LANMTSLRTLDVSSNQLT-----------GSISSSPLILDAYNNEINAEITE--SHSLTA 203
            +    + +LD+S N L             +  +S   L+   N +  + ++     L A
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 204 PNFQLKSLSLSS---GYEDGVTFPKFLHHQN-KLEDVDLSHIKMNGE----FPNWLLENN 255
               + SL+LS     Y+      K L      +  +DL     + +    F        
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 256 TKLESLSLVN--------DSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP-- 305
             + SL+L          D L            ++  L++  NN   +  AE+   L   
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILA---AIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 306 --SLSSFNISMNALDGSIPSSFG-----NMNFLQILDLSNNHLTGEIPEHLAIG---CVN 355
             S++S ++S N L     +          N +  L+L  N L G   E+L +      +
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 356 LEILVLSNNNLE----------GHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLE 405
           L+ + L  + ++          G  F     +  +                 +S  +   
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD---KNGKEIHPSHSIPISNLIREL 311

Query: 406 GLHLNNNNLSG 416
               +  +L  
Sbjct: 312 SGKADVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 54/356 (15%), Positives = 107/356 (30%), Gaps = 71/356 (19%)

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILP----SLSSFNISMNALD----GSIPSSFGN 327
                 +  LD+S NN       E+         S++S N+S N+L       +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 328 MNF-LQILDLSNNHLTGE----IPEHLAIGCVNLEILVLSNNNL--EGHMF------SKN 374
           +   +  L+LS N L+ +    + + LA     + +L L  N+   +          +  
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 375 FNLTKLSWLLLEDNHFVEEIPQSLSKCL-----SLEGLHLNNNNLSGKIPQWLGNL---- 425
            ++T L+   L  N    +    L + L     ++  L+L  NNL+ K    L       
Sbjct: 138 ASITSLN---LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 426 -TGLQYIIIPENHLEGPIPVAFCQL-----DSLQILGISDNNISGSLPSYLSYNRLNGSI 479
              +  + +  N L          +     + +  L +  N + G     L         
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-------- 246

Query: 480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCGL-------NQLQLLDLSDNKLH-------- 524
               D L  L  + L ++ ++     Q   L        ++ L+D +  ++H        
Sbjct: 247 -LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305

Query: 525 -GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNL 579
             +               L     I    ++   +       L        +   L
Sbjct: 306 NLIRELSGKADVPS----LLNQCLIFAQKHQTNIEDLNIPDELRE---SIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 53/383 (13%), Positives = 111/383 (28%), Gaps = 100/383 (26%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQE--LHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSL 62
             + +L L  NNL  I T    +   +   ++  L L  +SL       +  I  ++ + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA- 80

Query: 63  SMIDCKVNGVVRSQGFPHFKSLEYLDMN-----TACIALNASFLQIIGASMPFLKYLSLS 117
                               ++  L+++               L  I  +   +  L L 
Sbjct: 81  --------------------NVTSLNLSGNFLSYKSSDELVKTLAAIPFT---ITVLDLG 117

Query: 118 YFTFGTNSSRILDQGLCPL-VHLQELHMANNDLRGSLPWCLANM-----TSLRTLDVSSN 171
           +  F + SS    Q    L   +  L++  NDL       L  +      ++ +L++  N
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

Query: 172 QLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQN 231
            L  S + + L               +  L +    + SL LS+               N
Sbjct: 178 NL-ASKNCAEL---------------AKFLASIPASVTSLDLSA---------------N 206

Query: 232 KLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL----AGPFRLPIHSHKSLRLLDV 287
            L     + +                + SL+L  + L        +L   S K L+ + +
Sbjct: 207 LLGLKSYAELAYI------FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE--- 344
             +  +     +   +  +                    N+  + ++D +   +      
Sbjct: 261 DYDIVKNMSKEQCKALGAAFP------------------NIQKIILVDKNGKEIHPSHSI 302

Query: 345 -IPEHLAIGCVNLEILVLSNNNL 366
            I   +       ++  L N  L
Sbjct: 303 PISNLIRELSGKADVPSLLNQCL 325

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 9e-08
 Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFN 376
                      L  L + N      +      G   L  L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNL 414
             +LS L L  N   E +     + LSL+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 549 DLSC-NKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGK 606
            L C      D    +     +  L + +      + L     L  + +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 607 IPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
            P        L   ++++N L   +   T Q  +  E    GNP  C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 16/112 (14%)

Query: 442 IPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG 501
                   ++L  L I +      L                + GL  L +L +  + L  
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLE------------LRDLRGLGELRNLTIVKSGLRF 70

Query: 502 EVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553
             P       +L  L+LS N L  L        +L E      LSG  L C+
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV----LSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 9e-07
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQW-LGNLTGLQYIIIPENHLEGPIPVAFCQLDS 451
           +    L    +L  L++ N      +    L  L  L+ + I ++ L    P AF     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 452 LQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
           L  L +S N +               S+  +    L L  L+L+ N L
Sbjct: 82  LSRLNLSFNALE--------------SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 473 NRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCF 531
                     + G   L+ L + +      +    L GL +L+ L +  + L  + P  F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 532 DNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLT 580
                        LS ++LS N L   +  +      +Q L LS N L 
Sbjct: 77  HF--------TPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNN 339
           ++L  L + N      +       L  L +  I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNL 366
            L   +      G ++L+ LVLS N L
Sbjct: 91  ALE-SLSWKTVQG-LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 344 EIPEHLAIGCVNLEILVLSNNN----LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
           +   HL  G  NL  L + N      LE         L +L  L +  +      P +  
Sbjct: 22  DSLHHLP-GAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKSGLRFVAPDAFH 77

Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438
               L  L+L+ N L     + +  L+ LQ +++  N L
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 323 SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLS 381
           + + N    + LDL    +   I E+L       + +  S+N +        F  L +L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 382 WLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG-KIPQWLGNLTGLQYIIIPEN 436
            LL+ +N               L  L L NN+L        L +L  L Y+ I  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 64  MIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGT 123
           M+      + ++  + +      LD+    I      ++ +GA++     +  S      
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD----- 51

Query: 124 NSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
           N  R LD G   L  L+ L + NN +          +  L  L +++N L 
Sbjct: 52  NEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 16  NLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRS 75
            LT  +     +  N      L L      I +++++ +      ++   D   N + + 
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLR--GYKIPVIENLGATLDQFDAIDFSD---NEIRKL 57

Query: 76  QGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILD--QGL 133
            GFP  + L+ L +N   I       + +  ++P L  L L+      NS   L     L
Sbjct: 58  DGFPLLRRLKTLLVNNNRI---CRIGEGLDQALPDLTELILTN-----NSLVELGDLDPL 109

Query: 134 CPLVHLQELHMANN---DLRGSLPWCLANMTSLRTLD 167
             L  L  L +  N   + +    + +  +  +R LD
Sbjct: 110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
                 +DL   K I  I      L +   ++ S N +    L  F  LR +++L + +N
Sbjct: 18  AVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNN 74

Query: 602 KLNGKIPCQLVELNALVVFSVAYNNLS 628
           ++          L  L    +  N+L 
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL--IGDIPPQI 563
           Q     + + LDL   K+  +          +    L     ID S N++  +   P   
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIE---------NLGATLDQFDAIDFSDNEIRKLDGFP--- 61

Query: 564 GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
             L R++TL +++N +          L  +  L L +N L 
Sbjct: 62  -LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSS 309
             N  +   L L    +     L   +      +D S+N  +     ++     L  L +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKT 68

Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLT--GEIPEHLAIGCVNLEILVLSNN 364
             ++ N +          +  L  L L+NN L   G++ + LA    +L  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 31  FTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMN 90
              ++++ L  S + +S L  I S    L++LS+   +++  + +       +L  L++ 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNL- 149

Query: 91  TACIALNASFLQIIGASMPFLKYLSLSY-FTFGTNSSRILDQGLCPLVHLQELHMANNDL 149
           + C   +   LQ + +S   L  L+LS+ F F     ++    +     + +L+++    
Sbjct: 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRK 207

Query: 150 R---GSLPWCLANMTSLRTLDVSS 170
                 L   +    +L  LD+S 
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSD 231

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 10/226 (4%)

Query: 194 EITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLE 253
            +    +    +  + +      + D      F   +  ++ +DLS+  +     + +L 
Sbjct: 58  NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILS 115

Query: 254 NNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSN-NNFQGRIPAEIGDILPSLSSFNI 312
             +KL++LSL    L+ P    +  + +L  L++S  + F       +      L   N+
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 313 S--MNALDGSIPSSFG-NMNFLQILDLS--NNHLTGEIPEHLAIGCVNLEILVLSN-NNL 366
           S   +  +  +  +       +  L+LS    +L       L   C NL  L LS+   L
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 367 EGHMFSKNFNLTKLSWLLLEDNHFV-EEIPQSLSKCLSLEGLHLNN 411
           +   F + F L  L  L L   + +  E    L +  +L+ L +  
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 16/173 (9%)

Query: 5   SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDF-SSLHISLLQSIASIFPSLKSLS 63
           S L  L L    L+         L   +NL  L L   S      LQ++ S    L  L+
Sbjct: 118 SKLQNLSLEGLRLS---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174

Query: 64  MIDCK--VNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
           +  C       V+       +++  L+++     L  S L  +    P L +L LS    
Sbjct: 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD--- 231

Query: 122 GTNSSRILDQG---LCPLVHLQELHMAN-NDLRGSLPWCLANMTSLRTLDVSS 170
              S  + +        L +LQ L ++   D+       L  + +L+TL V  
Sbjct: 232 ---SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
             N    VP +L     L L+DLS+N++  L    F N        ++ L  + LS N+L
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN--------MTQLLTLILSYNRL 90

Query: 556 IGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
              IPP+    L  ++ L+L  N+++      F +L  +  L +  N
Sbjct: 91  -RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE---GHMFSKNFN 376
            +P    N   L ++DLSNN ++  +          L  L+LS N L       F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 377 LTKLSWLLLEDNHFVEEIPQ-SLSKCLSLEGLHLNNN 412
           L  L  L L  N  +  +P+ + +   +L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 12/135 (8%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNKLHGLI 527
            L  N L        D L  L+ L L  N L+  +P  +   L  L  L+LS N+L  L 
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILST 586
              FD         L+ L  + L+ N+L   +P  +   LT+++ L L  N L       
Sbjct: 93  NGVFDK--------LTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143

Query: 587 FTNLRHIESLDLYHN 601
           F  L  ++ + L+ N
Sbjct: 144 FDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
           L L  N+L+         L  L  L L  NKL  L    F+         L+ L+ ++LS
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK--------LTSLTYLNLS 84

Query: 552 CNKLIGDIPPQI-GNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
            N+L   +P  +   LT+++ L L+ N L       F  L  ++ L LY N+L
Sbjct: 85  TNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 19/143 (13%)

Query: 303 ILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS 362
           I    +  ++  N+L       F  +  L  L L  N L   +P  +     +L  L LS
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 363 NN---NLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS-----KCLSLEGLHLNNNNL 414
            N   +L   +F K   LT+L  L L  N       QSL      K   L+ L L  N L
Sbjct: 85  TNQLQSLPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 415 SGKIPQ-WLGNLTGLQYIIIPEN 436
              +P      LT LQYI + +N
Sbjct: 137 KS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG 464
             L L  N+L          LT L  + +  N L+      F +L SL  L         
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL--------- 81

Query: 465 SLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPVQLCG----LNQLQLLDLS 519
                LS N+L  S+P+ + D L +L  L L  N L+  +P    G    L QL+ L L 
Sbjct: 82  ----NLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD---GVFDKLTQLKDLRLY 132

Query: 520 DNKLHGLIPPCFDN 533
            N+L  +    FD 
Sbjct: 133 QNQLKSVPDGVFDR 146

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 29/202 (14%)

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
                +L   +++  + Q    L  +  II   + ++  +      L +++ L +  N +
Sbjct: 20  ETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKL 75

Query: 463 SGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNK 522
              + +                 L  L++LIL  N L+         L  L+ L L +N+
Sbjct: 76  H-DISAL--------------KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120

Query: 523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTG 581
           L  L    FD         L+ L+ ++L+ N+L   +P  +   LT +  L+LS+N L  
Sbjct: 121 LQSLPDGVFDK--------LTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 582 TILSTFTNLRHIESLDLYHNKL 603
                F  L  ++ L LY N+L
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 52/230 (22%), Positives = 84/230 (36%), Gaps = 57/230 (24%)

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLG---NLTGLQYII 432
            L  +  ++  ++  ++ +   +    ++  L L  N L       +     LT L Y+I
Sbjct: 39  ELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNKL-----HDISALKELTNLTYLI 91

Query: 433 IPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSH 491
           +  N L+      F +L +L+ L              L  N+L  S+PD + D L  L++
Sbjct: 92  LTGNQLQSLPNGVFDKLTNLKEL-------------VLVENQLQ-SLPDGVFDKLTNLTY 137

Query: 492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
           L LAHN L+         L  L  LDLS N+L  L    FD                   
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD------------------- 178

Query: 552 CNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
                         LT+++ L L  N L       F  L  ++ + L+ N
Sbjct: 179 -------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNH 389
           ++ L L N        E L    VNLE L L N  L       N   L KL  L L +N 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENR 82

Query: 390 FVEEIPQSLSKCLSLEGLHLNNNNLSG-KIPQWLGNLTGLQYIIIPEN 436
               +     K  +L  L+L+ N L      + L  L  L+ + +   
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 30  NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDM 89
               +  L LD    +   ++ + + F +L+ LS+I+  +  V      P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 90  NTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILD-QGLCPLVHLQELHMANN- 147
           +   I      L ++   +P L +L+LS    G     I   + L  L  L+ L + N  
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLS----GNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 148 --DLRGSLPWCLANMTSLRTLD 167
             +L          +  L  LD
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 10/115 (8%)

Query: 254 NNTKLESLSLVNDSLAGPFRLPIHSH-KSLRLLDVSNNNFQGRIPAEIGDI--LPSLSSF 310
               +  L L N          + +   +L  L + N          + ++  LP L   
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76

Query: 311 NISMNALDGSIPSSFGNMNFLQILDLSNNHLTG-EIPEHLAIGCVNLEILVLSNN 364
            +S N + G +      +  L  L+LS N L      E L      L+ L L N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK-KLECLKSLDLFNC 130

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 3e-06
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 39/180 (21%)

Query: 250 WLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGD-ILPSL- 307
            +L+    L +L +          +      +L+ L++ +      +  +I    LP+L 
Sbjct: 166 PVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 308 ------SSFNISMNALDGSIPSSFGNMNF--LQILDLSNNHLTGEIPEHLAIGCV--NLE 357
                    +   +         F    F  L+ L + +      + E      +   LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 358 ILVLSNNNL--EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
            + +S   L  EG                         +   + K   L+ +++  N LS
Sbjct: 283 TMDISAGVLTDEG----------------------ARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 3e-06
 Identities = 21/138 (15%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 486 LLRLSHLILAHNNLEGEVPVQLCGLN--QLQLLDLSDN-KLHGLIPPCFDNTALHERRVL 542
              L  L +    L   V   + G +   L+ L L    + +G          L  +   
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 543 SLLSGIDLSCNKLIGDIPPQIGN---LTRIQTLNLSHNNLTGT----ILSTFTNLRHIES 595
             L  + +   +    +         L +++T+++S   LT      +L     ++H++ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 596 LDLYHNKLNGKIPCQLVE 613
           +++ +N L+ ++  +L +
Sbjct: 312 INMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 22/161 (13%)

Query: 28  LHNFTNLEYLTLDFSS-LHISLLQSIASIFPSLKSLSMIDCKV-NGVVRSQGFPHFKSLE 85
           L     L  L +  ++ L I          P+LKSL +I   + + VV         +LE
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPR-----PNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 86  YLDMNT--------ACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV 137
            L +            + +            P LK+L +           +  +    L 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGIVDAEEQNVVVEMFLESDI-LP 279

Query: 138 HLQELHMANNDLRGS----LPWCLANMTSLRTLDVSSNQLT 174
            L+ + ++   L       L   +  +  L+ +++  N L+
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 5e-05
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 200 SLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLE-NNTKL 258
            +      L +L +     + ++  K       L+ +++    +       +L  +   L
Sbjct: 166 PVLDAMPLLNNLKIKGT--NNLSIGKKPR--PNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 259 ESLSLVNDSLAGPFR---------LPIHSHKSLRLLDVSNNNFQGRIPAEIG--DILPSL 307
           E L L        F                 +L+ L + +   Q  +       DILP L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 308 SSFNISMNALDGS----IPSSFGNMNFLQILDLSNNHLTGEIPEHLA 350
            + +IS   L       +      +  L+ +++  N+L+ E+ + L 
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 16/157 (10%)

Query: 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLR 283
              L     L ++ +     N         N   LE +       +    +      +L 
Sbjct: 165 SPVLDAMPLLNNLKIK-GTNNLSIGKKPRPNLKSLE-IISGGLPDSVVEDILGSDLPNLE 222

Query: 284 LLDVS--------NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGN---MNFLQ 332
            L +         + +     P    D  P+L    I        +   F     +  L+
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 333 ILDLSNNHLTGEIPEHLAIGC---VNLEILVLSNNNL 366
            +D+S   LT E    L        +L+ + +  N L
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNH 389
           ++ L L N+       E L      LE L   N  L       N   L KL  L L DN 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNR 75

Query: 390 FVEEIPQSLSKCLSLEGLHLNNNNLSG-KIPQWLGNLTGLQYIIIPEN 436
               +     KC +L  L+L+ N +      + L  L  L+ + +   
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 278 SHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
             + L  L   N          I ++  L  L    +S N + G +         L  L+
Sbjct: 40  EFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 336 LSNNHLTG-EIPEHLAIGCVNLEILVLSNN 364
           LS N +      E L     NL+ L L N 
Sbjct: 95  LSGNKIKDLSTIEPLK-KLENLKSLDLFNC 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 24/177 (13%)

Query: 374 NFNLTKLSWLLLEDNHF----VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQ 429
                  +     + H     +E++  +LS   + + L L+ NN+  KI   L  +  L+
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLR 73

Query: 430 YIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL 489
            + +  N ++  I       D+L+ L IS N I+           L+G     I+ L+ L
Sbjct: 74  ILSLGRNLIKK-IENLDAVADTLEELWISYNQIA----------SLSG-----IEKLVNL 117

Query: 490 SHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL 545
             L +++N +     +  L  L++L+ L L+ N L+       + T+ +   V+  L
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRL 173

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 321 IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKL 380
           + ++   +   + L LS N++  +I   L+ G  NL IL L  N ++  + + +     L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 381 SWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG-KIPQWLGNLTGLQYIIIPEN 436
             L +  N  +  +   + K ++L  L+++NN ++       L  L  L+ +++  N
Sbjct: 96  EELWISYNQ-IASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 252 LENNTKLESLSLVNDSLAGPFR------LPIHSHKSLRLLDVSNNNFQGRIPAEIGDI-- 303
            E    + +       L G           + + K+ + L +S NN        I  I  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN--------IEKISS 65

Query: 304 ---LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360
              + +L   ++  N +   I +     + L+ L +S N +   +   +    VNL +L 
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIE-KLVNLRVLY 121

Query: 361 LSNNNLEG-HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
           +SNN +       K   L KL  LLL  N    +  ++ +
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 49/307 (15%), Positives = 100/307 (32%), Gaps = 42/307 (13%)

Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN 311
           ++N   LE+   +   L    R  +   + L  L   +  FQ +  +   ++L SL   N
Sbjct: 22  IKNLDALENAQAIKKKLGKLGRQVLPPSELLDHL-FFHYEFQNQRFSA--EVLSSLRQLN 78

Query: 312 ISMNALDGSIPSSFG-----NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL 366
           ++   +     +          + L  ++L++  L       L    +    L L  N+L
Sbjct: 79  LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138

Query: 367 E-------GHMFSKNFNLTKLSWLLLEDNHF----VEEIPQSLSKCLSLEGLHLNNNNLS 415
                     +     +  +++ L L +N      V  + + L+   S+  L L +  L 
Sbjct: 139 GPEACKDLRDLLLH--DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 416 GK----IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL----DSLQILGISDNNIS---- 463
            +    +   L     LQ + +  N       +A  +      SL++L +  N +S    
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256

Query: 464 -------GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLL 516
                  G+                  +    +   +  + N      VQ     +L L 
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHL--ELLLR 314

Query: 517 DLSDNKL 523
           DL D++ 
Sbjct: 315 DLEDSRG 321

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 509 GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLT 567
            L  L  L+L  N+L G+ P  F+          S +  + L  NK+  +I  ++   L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEG--------ASHIQELQLGENKI-KEISNKMFLGLH 102

Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
           +++TLNL  N ++  +  +F +L  + SL+L  N
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNN---NLEGHMFSKNFNLTKLSWLLLEDN 388
             L L++N L     + L     +L  L L  N    +E + F      + +  L L +N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 389 HFVEEIPQSL-SKCLSLEGLHLNNNNLSGKIPQWLG---NLTGLQYIIIPEN 436
              +EI   +      L+ L+L +N +S  +    G   +L  L  + +  N
Sbjct: 89  KI-KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 285 LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSS-FGNMNFLQILDLSNNHLTG 343
           L +++N         +   LP L    +  N L   I  + F   + +Q L L  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 344 EIPEHLAIGCVNLEILVLSNNNL----EGHMFSKNFNLTKLSWLLLEDNHF 390
           EI   + +G   L+ L L +N +     G  F    +L  L+ L L  N F
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPG-SFE---HLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 15/95 (15%)

Query: 325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE---GHMFSKNFNLTKLS 381
           FG +  L  L+L  N LT  I  +   G  +++ L L  N ++     MF     L +L 
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLG---LHQLK 105

Query: 382 WLLLEDNHFVEEIPQ----SLSKCLSLEGLHLNNN 412
            L L DN  +  +       L+   SL  L+L +N
Sbjct: 106 TLNLYDNQ-ISCVMPGSFEHLN---SLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 514 QLLDLSDNKLHGLIPP-CFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQT 571
             L L+DN+L  +     F          L  L  ++L  N+L   I P      + IQ 
Sbjct: 32  TELLLNDNELGRISSDGLFGR--------LPHLVKLELKRNQL-TGIEPNAFEGASHIQE 82

Query: 572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603
           L L  N +       F  L  +++L+LY N++
Sbjct: 83  LQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 16/112 (14%)

Query: 448 QLDSLQILGISDNNISGSLPS----YLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGE 502
            L+  ++  IS + + G LP      L  N+L   I     +G   +  L L  N ++ E
Sbjct: 35  LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-E 92

Query: 503 VPVQLC-GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553
           +  ++  GL+QL+ L+L DN++  ++P  F++        L+ L+ ++L+ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH--------LNSLTSLNLASN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 509 GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLT 567
            L QL  L LS N++  L    FD         L+ L+ + L  NKL   +P  +   LT
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDK--------LTKLTILYLHENKL-QSLPNGVFDKLT 100

Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
           +++ L L  N L       F  L  ++ + L+ N
Sbjct: 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 78/547 (14%), Positives = 162/547 (29%), Gaps = 180/547 (32%)

Query: 205 NFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLV 264
           +F+         Y+D      F      +++ D   ++   + P  +L   +K E    +
Sbjct: 8   DFETGEHQYQ--YKD--ILSVFE--DAFVDNFDCKDVQ---DMPKSIL---SKEE----I 51

Query: 265 NDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSS 324
           +  +     +      +LRL     +  +  +   + ++L                    
Sbjct: 52  DHIIMSKDAV----SGTLRLFWTLLSKQEEMVQKFVEEVLRI------------------ 89

Query: 325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL 384
             N  FL +  +        +   + I   +     L N+N    +F+K +N+++L    
Sbjct: 90  --NYKFL-MSPIKTEQRQPSMMTRMYIEQRD----RLYNDN---QVFAK-YNVSRL---- 134

Query: 385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPI-- 442
                   ++ Q+L +    + + ++    SGK   W+     L Y +  +  ++  I  
Sbjct: 135 ----QPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKV--QCKMDFKIFW 186

Query: 443 -PVAFCQLDS--LQILGISDNNISGSL-PSYLSYNRLNGSIPDRIDGL-LRLSHLILAHN 497
             +  C      L++L      +   + P++ S +  + +I  RI  +   L  L+ +  
Sbjct: 187 LNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK- 241

Query: 498 NLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
                 P + C      LL L +               +   +  +     +LSC  L+ 
Sbjct: 242 ------PYENC------LLVLLN---------------VQNAKAWNAF---NLSCKILL- 270

Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTILS------TFTNLRHIESLDLYHNKLNGKIPCQL 611
                    TR + +    +  T T +S      T T     E   L    L+ +     
Sbjct: 271 --------TTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRP---- 315

Query: 612 VELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTMLEAST 671
                              +P                NP               ++  S 
Sbjct: 316 -----------------QDLPREVL----------TTNPRRLS-----------IIAESI 337

Query: 672 SNEGD--DNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVEMWIASCYYFV 729
            +     DN   ++C  +  TT  +I       +  + P   R+ F            F 
Sbjct: 338 RDGLATWDNWKHVNC--DKLTT--IIESS----LNVLEPAEYRKMFD-------RLSVFP 382

Query: 730 VDNLIPI 736
               IP 
Sbjct: 383 PSAHIPT 389

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	740
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.71

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-71  Score=643.01  Aligned_cols=612  Identities=30%  Similarity=0.439  Sum_probs=526.5

Q ss_pred             CCCCCCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchH--HHHhcCCCCCEEEcCCCCCCCcCCCCCC
Q 038858            1 MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQ--SIASIFPSLKSLSMIDCKVNGVVRSQGF   78 (740)
Q Consensus         1 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~--~l~~~l~~L~~L~l~~~~~~~~~~~~~l   78 (740)
                      |++++.|+.++++.+.+.. .+   +.++++++|++|++++|.+.+..+.  .+.. +++|++|++++|.+.+..+...+
T Consensus        73 l~~L~~L~~l~~~~~~~~~-l~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~  147 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHING-SV---SGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGG  147 (768)
T ss_dssp             TTTCTTCCEEECTTSCEEE-CC---CCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSC
T ss_pred             HhccCcccccCCcCCCcCC-Cc---hhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHh
Confidence            3566777777777765543 23   5789999999999999999987777  8888 99999999999999877776656


Q ss_pred             CCCCCCCEEecCCCccccCccchHH---HhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCc
Q 038858           79 PHFKSLEYLDMNTACIALNASFLQI---IGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPW  155 (740)
Q Consensus        79 ~~l~~L~~L~L~~~~i~~~~~~~~~---l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  155 (740)
                      .++++|++|++++|  .+.+..+..   +.. +++|++|++++|.+.   +..   .+..+++|++|++++|.+.+..|.
T Consensus       148 ~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~---~~~---~~~~l~~L~~L~Ls~n~l~~~~~~  218 (768)
T 3rgz_A          148 LKLNSLEVLDLSAN--SISGANVVGWVLSDG-CGELKHLAISGNKIS---GDV---DVSRCVNLEFLDVSSNNFSTGIPF  218 (768)
T ss_dssp             CCCTTCSEEECCSS--CCEEETHHHHHHTTC-CTTCCEEECCSSEEE---SCC---BCTTCTTCCEEECCSSCCCSCCCB
T ss_pred             ccCCCCCEEECCCC--ccCCcCChhhhhhcc-CCCCCEEECCCCccc---ccC---CcccCCcCCEEECcCCcCCCCCcc
Confidence            89999999999999  445555554   455 999999999999987   433   347899999999999999987776


Q ss_pred             cccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCE
Q 038858          156 CLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLED  235 (740)
Q Consensus       156 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  235 (740)
                       ++++++|++|++++|.+++.+|..+                     ..+++|++|++ .++...+..|..  .+++|+.
T Consensus       219 -l~~l~~L~~L~Ls~n~l~~~~~~~l---------------------~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~  273 (768)
T 3rgz_A          219 -LGDCSALQHLDISGNKLSGDFSRAI---------------------STCTELKLLNI-SSNQFVGPIPPL--PLKSLQY  273 (768)
T ss_dssp             -CTTCCSCCEEECCSSCCCSCHHHHT---------------------TTCSSCCEEEC-CSSCCEESCCCC--CCTTCCE
T ss_pred             -cccCCCCCEEECcCCcCCCcccHHH---------------------hcCCCCCEEEC-CCCcccCccCcc--ccCCCCE
Confidence             9999999999999999987655432                     45568999999 555666555544  7889999


Q ss_pred             EEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCC
Q 038858          236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN  315 (740)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  315 (740)
                      |++++|.+++.+|..+...+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|
T Consensus       274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            99999999988888875556999999999999988888889999999999999999988888885666899999999999


Q ss_pred             cCcccCCccccCCC-CCcEEEeecccCCCccChhhhh-cCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc
Q 038858          316 ALDGSIPSSFGNMN-FLQILDLSNNHLTGEIPEHLAI-GCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE  393 (740)
Q Consensus       316 ~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  393 (740)
                      .+++.+|..+..++ +|++|++++|.+++.++..+.. .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.
T Consensus       354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT  433 (768)
T ss_dssp             EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence            99888898888887 8999999999998777776652 267899999999999988888888999999999999999988


Q ss_pred             CccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCC
Q 038858          394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYN  473 (740)
Q Consensus       394 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n  473 (740)
                      .|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++         
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---------  504 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG---------  504 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS---------
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC---------
Confidence            89899999999999999999998889889999999999999999998899999999999999999998873         


Q ss_pred             cCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccc------------------
Q 038858          474 RLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTA------------------  535 (740)
Q Consensus       474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------------  535 (740)
                          .+|.++..+++|++|++++|.+++.+|..++.+++|+.|++++|++.+.+|..+....                  
T Consensus       505 ----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~  580 (768)
T 3rgz_A          505 ----EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN  580 (768)
T ss_dssp             ----CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred             ----cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence                5677788899999999999999988999999999999999999999887776553210                  


Q ss_pred             --------------------------------------------cchhhhccccceEEccCccccccCCcCccCCCcCcE
Q 038858          536 --------------------------------------------LHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQT  571 (740)
Q Consensus       536 --------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  571 (740)
                                                                  ...+..+++|+.|++++|++++.+|..++.+++|+.
T Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  660 (768)
T 3rgz_A          581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI  660 (768)
T ss_dssp             CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence                                                        001233578999999999999999999999999999


Q ss_pred             EeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCC
Q 038858          572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPF  651 (740)
Q Consensus       572 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~  651 (740)
                      |+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+. +++.++...++.|||+
T Consensus       661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~  739 (768)
T 3rgz_A          661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG  739 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTE
T ss_pred             EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCch
Confidence            999999999999999999999999999999999999999999999999999999999999986 7899999999999999


Q ss_pred             CCCCCCCCCCCCCc
Q 038858          652 LCGLPLPICRSPVT  665 (740)
Q Consensus       652 ~C~~~~~~c~~~~~  665 (740)
                      +|+.|+..|.....
T Consensus       740 Lcg~~l~~C~~~~~  753 (768)
T 3rgz_A          740 LCGYPLPRCDPSNA  753 (768)
T ss_dssp             EESTTSCCCCSCC-
T ss_pred             hcCCCCcCCCCCcc
Confidence            99988878876543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-65  Score=591.66  Aligned_cols=585  Identities=29%  Similarity=0.432  Sum_probs=365.5

Q ss_pred             CCCcEEECCCCCCccc---chHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchH--HHhc
Q 038858           32 TNLEYLTLDFSSLHIS---LLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQ--IIGA  106 (740)
Q Consensus        32 ~~L~~L~Ls~~~~~~~---~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~--~l~~  106 (740)
                      .+++.|+++++.+.+.   .+..+.+ ++.|+.++++.+.+.. .+ ..+..+++|++|+|++|  .+.+.++.  .++.
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~-L~~L~~l~~~~~~~~~-l~-~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~l~~  124 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHING-SV-SGFKCSASLTSLDLSRN--SLSGPVTTLTSLGS  124 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTT-CTTCCEEECTTSCEEE-CC-CCCCCCTTCCEEECCSS--EEEEEGGGGGGGGG
T ss_pred             CcEEEEECCCCCcCCccCccChhHhc-cCcccccCCcCCCcCC-Cc-hhhccCCCCCEEECCCC--cCCCcCCChHHHhC
Confidence            4566666666666554   4455555 5566666666555431 22 23666666666666666  33444444  5555


Q ss_pred             cCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCcc---ccCCCCCCEEEccCCcCccccCCC---
Q 038858          107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWC---LANMTSLRTLDVSSNQLTGSISSS---  180 (740)
Q Consensus       107 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~---  180 (740)
                       +++|++|++++|.+.   +..+...+.++++|++|++++|++++..+..   +.++++|++|++++|.+.+..+..   
T Consensus       125 -l~~L~~L~Ls~n~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~  200 (768)
T 3rgz_A          125 -CSGLKFLNVSSNTLD---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV  200 (768)
T ss_dssp             -CTTCCEEECCSSEEE---CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCT
T ss_pred             -CCCCCEEECcCCccC---CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCC
Confidence             666666666666665   4444423356666666666666666555544   556666666666666665433320   


Q ss_pred             -chhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCC
Q 038858          181 -PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLE  259 (740)
Q Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  259 (740)
                       +..+++.+|.+.+....    ....++|++|++ .++.+.+..|..+..+++|+.|++++|.+.+..|..   .+++|+
T Consensus       201 ~L~~L~Ls~n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~  272 (768)
T 3rgz_A          201 NLEFLDVSSNNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQ  272 (768)
T ss_dssp             TCCEEECCSSCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCC
T ss_pred             cCCEEECcCCcCCCCCcc----cccCCCCCEEEC-cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCC
Confidence             00111111111111100    123334555555 333444444445555555555555555554444432   445555


Q ss_pred             EEeccCCcccCCCCCCCCCC-CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCcc-ccCCCCCcEEEee
Q 038858          260 SLSLVNDSLAGPFRLPIHSH-KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSS-FGNMNFLQILDLS  337 (740)
Q Consensus       260 ~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~  337 (740)
                      +|++++|.+++..+..+... ++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|.. +..+++|++|+++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            55555555544444444332 55555555555554444444433 455555555555554444433 4555555555555


Q ss_pred             cccCCCccChhhhhcCc-cCcEEEcCCccccccCCcCCCC--CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcC
Q 038858          338 NNHLTGEIPEHLAIGCV-NLEILVLSNNNLEGHMFSKNFN--LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNL  414 (740)
Q Consensus       338 ~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i  414 (740)
                      +|.+++.+|..+. .++ +|++|++++|.+.+..+..+..  +++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       352 ~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          352 FNEFSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             SSEEEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCccCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence            5555444444443 222 4555555555554444443333  44555555555555555555555555555555555555


Q ss_pred             cccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEc
Q 038858          415 SGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLIL  494 (740)
Q Consensus       415 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L  494 (740)
                      ++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|+             +++.+|..+..+++|++|++
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-------------LTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-------------CCSCCCGGGGGCTTCCEEEC
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-------------ccCcCCHHHhcCCCCCEEEc
Confidence            54555555555555555555555555555555555555555555554             45677888999999999999


Q ss_pred             ccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC------------
Q 038858          495 AHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ------------  562 (740)
Q Consensus       495 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------  562 (740)
                      ++|++++.+|..++.+++|++|++++|++.+.+|..+..        +++|+.|++++|.+++.+|..            
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  569 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--------CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF  569 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG--------CTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC--------CCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence            999999999999999999999999999999999988877        679999999999998766643            


Q ss_pred             ----------------------------------------------------------ccCCCcCcEEeCcCCcCCCccc
Q 038858          563 ----------------------------------------------------------IGNLTRIQTLNLSHNNLTGTIL  584 (740)
Q Consensus       563 ----------------------------------------------------------~~~l~~L~~L~L~~n~l~~~~~  584 (740)
                                                                                +..+++|+.|+|++|++++.+|
T Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip  649 (768)
T 3rgz_A          570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP  649 (768)
T ss_dssp             TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence                                                                      3446789999999999999999


Q ss_pred             hhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          585 STFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       585 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      ..|+.+++|+.|+|++|++++.+|..+..+++|+.||+++|+++|.+|..+..++.|+.+++++|+....-|
T Consensus       650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998765433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.9e-61  Score=548.87  Aligned_cols=592  Identities=20%  Similarity=0.213  Sum_probs=471.2

Q ss_pred             CEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEE
Q 038858            8 NTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYL   87 (740)
Q Consensus         8 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L   87 (740)
                      +.+|.++++++.+ |   ..+.  +++++|++++|.+.+..+..+.. +++|++|++++|.+.+.. +..+.++++|++|
T Consensus         7 ~~~~cs~~~L~~i-p---~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L   78 (680)
T 1ziw_A            7 EVADCSHLKLTQV-P---DDLP--TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLE-PELCQKLPMLKVL   78 (680)
T ss_dssp             SEEECCSSCCSSC-C---SCSC--TTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCC-TTHHHHCTTCCEE
T ss_pred             CeeECCCCCcccc-c---cccC--CCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccCccC-HHHHhcccCcCEE
Confidence            5678888887765 3   2232  78888999888888777777777 888999999888887443 3457888889999


Q ss_pred             ecCCCccccCccchH-HHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEE
Q 038858           88 DMNTACIALNASFLQ-IIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL  166 (740)
Q Consensus        88 ~L~~~~i~~~~~~~~-~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  166 (740)
                      ++++|.+  . .++. .+.. +++|++|++++|.+.    .+++..|+++++|++|++++|.+.+..+..++++++|++|
T Consensus        79 ~L~~n~l--~-~l~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           79 NLQHNEL--S-QLSDKTFAF-CTNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             ECCSSCC--C-CCCTTTTTT-CTTCSEEECCSSCCC----CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             ECCCCcc--C-ccChhhhcc-CCCCCEEECCCCccC----ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            9988844  3 3333 4555 888999999888876    4555478888899999999998887777788888899999


Q ss_pred             EccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCccc
Q 038858          167 DVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGE  246 (740)
Q Consensus       167 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  246 (740)
                      ++++|.+++..+..+                   ......+|++|++ ..+.+.+..+..+..+.+|+.++++++.+.+.
T Consensus       151 ~L~~n~l~~~~~~~~-------------------~~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~  210 (680)
T 1ziw_A          151 LLSNNKIQALKSEEL-------------------DIFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS  210 (680)
T ss_dssp             ECCSSCCCCBCHHHH-------------------GGGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHH
T ss_pred             EccCCcccccCHHHh-------------------hccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChh
Confidence            999888875433211                   0112347888888 55566666777788888999999998887644


Q ss_pred             CchHhh--hcCCCCCEEeccCCcccCCCCCCCCCCCC--cCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCC
Q 038858          247 FPNWLL--ENNTKLESLSLVNDSLAGPFRLPIHSHKS--LRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIP  322 (740)
Q Consensus       247 ~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  322 (740)
                      ....+.  -..++|++|++++|.+.+..+..+..++.  |++|++++|.+.+..+..+. .+++|++|++++|.+++..|
T Consensus       211 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~  289 (680)
T 1ziw_A          211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFS  289 (680)
T ss_dssp             HHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECT
T ss_pred             hHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccCh
Confidence            333221  13478999999999988877777777654  99999999998855444444 48899999999999998888


Q ss_pred             ccccCCCCCcEEEeecccCCC--------ccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccc--
Q 038858          323 SSFGNMNFLQILDLSNNHLTG--------EIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE--  392 (740)
Q Consensus       323 ~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--  392 (740)
                      ..|.++++|++|++++|...+        .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..  
T Consensus       290 ~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  369 (680)
T 1ziw_A          290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT  369 (680)
T ss_dssp             TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred             hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence            899999999999998875443        2223345578999999999999998888888899999999999987532  


Q ss_pred             cCcccccc--CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCC-ccccCCCCccEEeccCCcCCCCCCCC
Q 038858          393 EIPQSLSK--CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP-VAFCQLDSLQILGISDNNISGSLPSY  469 (740)
Q Consensus       393 ~~~~~~~~--l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~  469 (740)
                      .....|..  .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..|.++++|++|++++|++.+     
T Consensus       370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----  444 (680)
T 1ziw_A          370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-----  444 (680)
T ss_dssp             ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-----
T ss_pred             cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce-----
Confidence            22233433  3589999999999988888889999999999999999876444 688899999999999998763     


Q ss_pred             CCCCcCCccCchhhhccccCcEEEccccccc--ccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccce
Q 038858          470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLE--GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG  547 (740)
Q Consensus       470 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~  547 (740)
                              ..+..|..+++|+.|++++|.+.  +..|..+..+++|+.|++++|.+++..+..|..        +++|+.
T Consensus       445 --------~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--------l~~L~~  508 (680)
T 1ziw_A          445 --------LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG--------LEKLEI  508 (680)
T ss_dssp             --------CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCE
T ss_pred             --------eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--------ccccCE
Confidence                    34556778899999999999886  467888999999999999999999888777766        679999


Q ss_pred             EEccCccccccCC--------cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCE
Q 038858          548 IDLSCNKLIGDIP--------PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVV  619 (740)
Q Consensus       548 L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  619 (740)
                      |++++|.+++..+        ..|.++++|++|+|++|+++...+..|.++++|++|++++|++++..+..|..+++|+.
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            9999999986422        24788999999999999999777778999999999999999999777777899999999


Q ss_pred             EEccCCcccccCCCCCc-cccCCCccccCCCCCCCCCCC
Q 038858          620 FSVAYNNLSGKIPEMTT-QFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       620 L~l~~N~l~~~~~~~~~-~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      |++++|++++..|..+. .+++++.+++++|||.|+|+.
T Consensus       589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             EECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            99999999998887666 688999999999999999984

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-57  Score=527.60  Aligned_cols=551  Identities=20%  Similarity=0.224  Sum_probs=425.6

Q ss_pred             cEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccc-hHHHhccCCCCcE
Q 038858           35 EYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASF-LQIIGASMPFLKY  113 (740)
Q Consensus        35 ~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~-~~~l~~~l~~L~~  113 (740)
                      +..+.+++.++.. |. +   .++|++|++++|.+++. ++..|.++++|++|++++|  .....+ +..+.. +++|++
T Consensus         7 ~~~dcs~~~L~~v-P~-l---p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n--~~~~~i~~~~f~~-L~~L~~   77 (844)
T 3j0a_A            7 RIAFYRFCNLTQV-PQ-V---LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQ--YTPLTIDKEAFRN-LPNLRI   77 (844)
T ss_dssp             EEEEESCCCSSCC-CS-S---CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTT--CCCCEECTTTTSS-CTTCCE
T ss_pred             eEEEccCCCCCCC-CC-C---CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCC--CCccccCHHHhcC-CCCCCE
Confidence            3566667776654 33 2   56788888888888744 3445888888888888887  333444 344444 778888


Q ss_pred             EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCcc--ccCCCCCCEEEccCCcCccccCCCchhhccccccc
Q 038858          114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWC--LANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEI  191 (740)
Q Consensus       114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  191 (740)
                      |+|++|.+.    .+.+..|.++++|++|+|++|.+.+..+..  ++++++|++|++++|.+.+..              
T Consensus        78 L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------------  139 (844)
T 3j0a_A           78 LDLGSSKIY----FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------------  139 (844)
T ss_dssp             EECTTCCCC----EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------------
T ss_pred             EECCCCcCc----ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--------------
Confidence            888877776    333337777888888888888777655443  777788888888877765322              


Q ss_pred             chhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcC--CCCCEEeccCCccc
Q 038858          192 NAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENN--TKLESLSLVNDSLA  269 (740)
Q Consensus       192 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~  269 (740)
                                                     .+..++.+++|+.|++++|.+.+..+..+ ..+  ++|+.|++++|.+.
T Consensus       140 -------------------------------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          140 -------------------------------LHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             -------------------------------CCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSC
T ss_pred             -------------------------------cchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccc
Confidence                                           22457788899999999999887777765 555  88999999999988


Q ss_pred             CCCCCCCCCCCC------cCEEeccCCcCcccCChhHhhcC--CCCcEEEccCC---------cCcccCCccccCC--CC
Q 038858          270 GPFRLPIHSHKS------LRLLDVSNNNFQGRIPAEIGDIL--PSLSSFNISMN---------ALDGSIPSSFGNM--NF  330 (740)
Q Consensus       270 ~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n---------~~~~~~~~~~~~l--~~  330 (740)
                      +..+..+..+++      |++|++++|.+.+..+..+....  ++++.|.+..+         .+.+.....|.++  ++
T Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~  267 (844)
T 3j0a_A          188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS  267 (844)
T ss_dssp             CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred             cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence            877666665554      99999999988877777666532  46788887733         3333344455554  78


Q ss_pred             CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858          331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN  410 (740)
Q Consensus       331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  410 (740)
                      |+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus       268 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          268 VRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             ccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            999999999998 4444555689999999999999998888888899999999999999988888889999999999999


Q ss_pred             CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858          411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS  490 (740)
Q Consensus       411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~  490 (740)
                      +|.+....+..+..+++|+.|++++|.+++.     ..+++|+.|++++|+++              .+|..   ..+++
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~--------------~l~~~---~~~l~  404 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV--------------TLPKI---NLTAN  404 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC--------------CCCCC---CTTCC
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc--------------ccccc---ccccc
Confidence            9999877777889999999999999998743     23788999999999987              33322   45789


Q ss_pred             EEEccccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc-----ccCCcCcc
Q 038858          491 HLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI-----GDIPPQIG  564 (740)
Q Consensus       491 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~  564 (740)
                      .|++++|.+++... ..+..+++|+.|++++|++++..+.....       .+++|+.|++++|.+.     +..+..|.
T Consensus       405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  477 (844)
T 3j0a_A          405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS-------ENPSLEQLFLGENMLQLAWETELCWDVFE  477 (844)
T ss_dssp             EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC-------SCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred             eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc-------cCCccccccCCCCccccccccccchhhhc
Confidence            99999999986432 34668999999999999998765543221       1578999999999997     34456789


Q ss_pred             CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcc
Q 038858          565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNES  644 (740)
Q Consensus       565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~  644 (740)
                      .+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..+.  ++|+.|++++|++++..|..+   .+++.+
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l  552 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVL  552 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEE
Confidence            999999999999999999999999999999999999999987776665  899999999999999998764   578899


Q ss_pred             ccCCCCCCCCCCCC--------------------CCCCCCcccccCCCCCCCCcc
Q 038858          645 NYKGNPFLCGLPLP--------------------ICRSPVTMLEASTSNEGDDNL  679 (740)
Q Consensus       645 ~~~~Np~~C~~~~~--------------------~c~~~~~~~~~~~~~~~~~~~  679 (740)
                      ++++|||.|+|+..                    .|..|....+..........|
T Consensus       553 ~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C  607 (844)
T 3j0a_A          553 DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC  607 (844)
T ss_dssp             EEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred             EecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence            99999999999741                    577777766665554444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.7e-56  Score=510.58  Aligned_cols=580  Identities=21%  Similarity=0.205  Sum_probs=481.8

Q ss_pred             CCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCC
Q 038858            5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSL   84 (740)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L   84 (740)
                      +++++|+|++|.++++.+   ..++++++|++|++++|.+.+..+..+.. +++|++|++++|.+. .+++..|.++++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA---ANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELS-QLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG---GGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCcCH---HHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccC-ccChhhhccCCCC
Confidence            589999999999999877   78999999999999999999988888888 999999999999998 5666679999999


Q ss_pred             CEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCcccc--CCCC
Q 038858           85 EYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLA--NMTS  162 (740)
Q Consensus        85 ~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~--~l~~  162 (740)
                      ++|++++|.+  .+..+..+.. +++|++|++++|.+.   +. +...+.++++|++|++++|.+++..+..++  .+++
T Consensus       100 ~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~---~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A          100 TELHLMSNSI--QKIKNNPFVK-QKNLITLDLSHNGLS---ST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             SEEECCSSCC--CCCCSCTTTT-CTTCCEEECCSSCCS---CC-CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             CEEECCCCcc--CccChhHccc-cCCCCEEECCCCccc---cc-CchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            9999999954  4444455666 999999999999887   43 443789999999999999999877666554  5689


Q ss_pred             CCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhc---CCCCCCEEEcc
Q 038858          163 LRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLH---HQNKLEDVDLS  239 (740)
Q Consensus       163 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~  239 (740)
                      |++|++++|.+.+..|..+                     ....+|+.|++ .+..........+.   ..++|+.|+++
T Consensus       173 L~~L~L~~n~l~~~~~~~~---------------------~~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          173 LKKLELSSNQIKEFSPGCF---------------------HAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             ESEEECTTCCCCCBCTTGG---------------------GGSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             ccEEECCCCcccccChhhh---------------------hhhhhhhhhhc-cccccChhhHHHHHHHhhhccccEEEcc
Confidence            9999999999986655432                     33447888888 34333322211111   34789999999


Q ss_pred             CCCCcccCchHhhhcCC--CCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcC
Q 038858          240 HIKMNGEFPNWLLENNT--KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL  317 (740)
Q Consensus       240 ~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~  317 (740)
                      +|.+.+..|..+ ..++  +|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.. +++|++|++++|..
T Consensus       231 ~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~  308 (680)
T 1ziw_A          231 NSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFT  308 (680)
T ss_dssp             TSCCCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBC
T ss_pred             CCcccccChhHh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhh
Confidence            999998777765 5554  4999999999999888888999999999999999998665655554 89999999998754


Q ss_pred             cc-----cCC----ccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcccc--ccCCcCCCC--CCCCCeEE
Q 038858          318 DG-----SIP----SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE--GHMFSKNFN--LTKLSWLL  384 (740)
Q Consensus       318 ~~-----~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~--l~~L~~L~  384 (740)
                      .+     .+|    ..|..+++|++|++++|.+. .++...+.++++|++|++++|.+.  ......+..  .++|+.|+
T Consensus       309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~  387 (680)
T 1ziw_A          309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN  387 (680)
T ss_dssp             CC------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred             hcccccccccccChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence            42     223    37889999999999999998 455555668999999999999743  233333433  36899999


Q ss_pred             ccCCcccccCccccccCCCCCeEEccCCcCcccCC-CCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858          385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP-QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      +++|++.+..+..+..+++|++|++++|.+.+.++ ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+.
T Consensus       388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  467 (680)
T 1ziw_A          388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK  467 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred             CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence            99999999989999999999999999999986555 67889999999999999999888899999999999999999875


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS  543 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~  543 (740)
                      +.           +..|..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+..++......+..++
T Consensus       468 ~~-----------~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          468 NV-----------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             CT-----------TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             cc-----------ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence            21           2567788999999999999999998888889999999999999999987655444332223344578


Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhh-cCCCCCEEEc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLV-ELNALVVFSV  622 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~l  622 (740)
                      +|+.|++++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence            999999999999966666899999999999999999988888899999999999999999988888887 7899999999


Q ss_pred             cCCcccccCC
Q 038858          623 AYNNLSGKIP  632 (740)
Q Consensus       623 ~~N~l~~~~~  632 (740)
                      ++|++.+..+
T Consensus       617 ~~N~~~c~c~  626 (680)
T 1ziw_A          617 RFNPFDCTCE  626 (680)
T ss_dssp             TTCCCCBCCC
T ss_pred             cCCCcccCCc
Confidence            9999997654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.1e-54  Score=489.33  Aligned_cols=534  Identities=20%  Similarity=0.213  Sum_probs=376.2

Q ss_pred             EEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEE
Q 038858           36 YLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLS  115 (740)
Q Consensus        36 ~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~  115 (740)
                      .++.++..+.. +|..+.   +++++|++++|.+++ +++..|.++++|++|++++|  .+.+..+..+.. +++|++|+
T Consensus        16 ~~~c~~~~l~~-iP~~l~---~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~-l~~L~~L~   87 (606)
T 3t6q_A           16 TYNCENLGLNE-IPGTLP---NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRC--QIYWIHEDTFQS-QHRLDTLV   87 (606)
T ss_dssp             EEECTTSCCSS-CCTTSC---TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTC--CCCEECTTTTTT-CTTCCEEE
T ss_pred             eEECCCCCccc-CcCCCC---CcCcEEEccCCccCc-CChhHhccCccceEEECCCC--ccceeChhhccC-ccccCeee
Confidence            45555555442 233332   356777777777663 33345677777777777777  333444444555 77777777


Q ss_pred             ccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhc
Q 038858          116 LSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI  195 (740)
Q Consensus       116 Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~  195 (740)
                      +++|.+.    .+++..++++++|++|++++|.+++..+..++++++|++|++++|.+.+...                 
T Consensus        88 Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------  146 (606)
T 3t6q_A           88 LTANPLI----FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-----------------  146 (606)
T ss_dssp             CTTCCCS----EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-----------------
T ss_pred             CCCCccc----ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-----------------
Confidence            7776665    3333367777777777777777776556667777777777777777653111                 


Q ss_pred             ccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCC--EEeccCCcccCCCC
Q 038858          196 TESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLE--SLSLVNDSLAGPFR  273 (740)
Q Consensus       196 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~  273 (740)
                                                  +.. ..+++|+.|++++|.+++..+..+ +.+++|+  +|++++|.+.+..+
T Consensus       147 ----------------------------~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          147 ----------------------------PKG-FPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             ----------------------------CTT-CCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEECT
T ss_pred             ----------------------------ccc-cCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCccCh
Confidence                                        111 125567777777777765545443 6677777  67777777766555


Q ss_pred             CCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCc-----ccCCccccCCC--CCcEEEeecccCCCccC
Q 038858          274 LPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD-----GSIPSSFGNMN--FLQILDLSNNHLTGEIP  346 (740)
Q Consensus       274 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~l~--~L~~L~L~~n~l~~~~~  346 (740)
                      ..+.. .+|++|++++|..   ++..+.. +.+++...+....+.     ...+..|.++.  +|+.|++++|.++ .++
T Consensus       197 ~~~~~-~~L~~L~l~~~~~---~~~~~~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~  270 (606)
T 3t6q_A          197 GAFDS-AVFQSLNFGGTQN---LLVIFKG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NIS  270 (606)
T ss_dssp             TTTTT-CEEEEEECTTCSC---HHHHHHH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCC
T ss_pred             hHhhh-ccccccccCCchh---HHHHhhh-ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccC
Confidence            44433 5677777777652   2222222 344333332222111     12223333333  6777888888777 555


Q ss_pred             hhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCC-CCCCCc
Q 038858          347 EHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP-QWLGNL  425 (740)
Q Consensus       347 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l  425 (740)
                      ...+..+++|++|++++|.++. .+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.++ ..+..+
T Consensus       271 ~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          271 SNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             HHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence            5555577788888888887774 34556777888888888888877777778888888888888887764444 347778


Q ss_pred             cCcceeeccCCcccCCC--CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc
Q 038858          426 TGLQYIIIPENHLEGPI--PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV  503 (740)
Q Consensus       426 ~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  503 (740)
                      ++|++|++++|.+.+..  +..+..+++|++|++++|++.+             ..|..+..+++|++|++++|.+.+..
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-------------LKTEAFKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-------------ECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-------------CCHHHhcCCccCCeEECCCCcCCCcc
Confidence            88888888888887654  5677788888888888887652             34556777888888888888887665


Q ss_pred             cc-cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc---CCcCccCCCcCcEEeCcCCcC
Q 038858          504 PV-QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD---IPPQIGNLTRIQTLNLSHNNL  579 (740)
Q Consensus       504 ~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l  579 (740)
                      +. .+..+++|++|++++|.+.+..|..+..        +++|++|++++|.+.+.   .+..+..+++|++|++++|++
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHhC--------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence            54 4788888888888888888777777766        56888889988888752   335688899999999999999


Q ss_pred             CCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          580 TGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       580 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      ++..|..|..+++|++|++++|++++..|..+..++.| +|++++|++++..|..+..+++++.+++++|||.|+|+.
T Consensus       489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            99889999999999999999999999999999999999 999999999999898888899999999999999999973

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.8e-53  Score=481.75  Aligned_cols=533  Identities=18%  Similarity=0.185  Sum_probs=423.9

Q ss_pred             CcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcE
Q 038858           34 LEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKY  113 (740)
Q Consensus        34 L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~  113 (740)
                      -++++.+++.++.. |..+   .+++++|++++|.+. .+++..|.++++|++|++++|.  +.+..+..+.. +++|++
T Consensus        13 ~~~~~c~~~~l~~i-p~~~---~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~-l~~L~~   84 (606)
T 3vq2_A           13 NITYQCMDQKLSKV-PDDI---PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCE--IETIEDKAWHG-LHHLSN   84 (606)
T ss_dssp             TTEEECTTSCCSSC-CTTS---CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCC--CCEECTTTTTT-CTTCCE
T ss_pred             CCceEccCCCcccC-CCCC---CCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCc--ccccCHHHhhc-hhhcCE
Confidence            35677777776643 3333   357888888888887 3444458888888888888883  34444445555 788888


Q ss_pred             EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccch
Q 038858          114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINA  193 (740)
Q Consensus       114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~  193 (740)
                      |++++|.+.    .+++..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+                  
T Consensus        85 L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------  142 (606)
T 3vq2_A           85 LILTGNPIQ----SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS------------------  142 (606)
T ss_dssp             EECTTCCCC----CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC------------------
T ss_pred             eECCCCccc----ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc------------------
Confidence            888887776    3433377788888888888888876666677788888888888877652                  


Q ss_pred             hcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCC----CCEEeccCCccc
Q 038858          194 EITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK----LESLSLVNDSLA  269 (740)
Q Consensus       194 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~  269 (740)
                                                 ..+|..++.+++|+.|++++|.+++..+..+ +.+++    +++|++++|.+.
T Consensus       143 ---------------------------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          143 ---------------------------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             ---------------------------CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCC
T ss_pred             ---------------------------eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcc
Confidence                                       1345678888999999999999987666554 44444    458999999998


Q ss_pred             CCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcc------cCCccccCCC--CCcEEEe-eccc
Q 038858          270 GPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG------SIPSSFGNMN--FLQILDL-SNNH  340 (740)
Q Consensus       270 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~l~--~L~~L~L-~~n~  340 (740)
                      +..+..+... +|++|++++|.+.+.........++.++.+++..+.+..      ..+..+.++.  .++.+++ ..+.
T Consensus       195 ~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~  273 (606)
T 3vq2_A          195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND  273 (606)
T ss_dssp             EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred             eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence            7766666554 899999999988754444445558899988886554432      1122233332  4566777 6677


Q ss_pred             CCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCC
Q 038858          341 LTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQ  420 (740)
Q Consensus       341 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  420 (740)
                      +.+.+|.  +..+++|+.|++++|.+....  .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..  
T Consensus       274 ~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--  344 (606)
T 3vq2_A          274 FSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--  344 (606)
T ss_dssp             CCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--
T ss_pred             ccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--
Confidence            7766665  557899999999999997654  778899999999999999 5666 45 8999999999999655333  


Q ss_pred             CCCCccCcceeeccCCcccCC--CCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc
Q 038858          421 WLGNLTGLQYIIIPENHLEGP--IPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN  498 (740)
Q Consensus       421 ~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  498 (740)
                      .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.              .+|..+..+++|+.|++++|.
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--------------IMSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE--------------EECCCCTTCTTCCEEECTTSE
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc--------------cchhhccCCCCCCeeECCCCc
Confidence            567899999999999999866  3778899999999999999987              455678889999999999999


Q ss_pred             cccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc-cCCcCccCCCcCcEEeCcC
Q 038858          499 LEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG-DIPPQIGNLTRIQTLNLSH  576 (740)
Q Consensus       499 l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~  576 (740)
                      +.+..+ ..+..+++|+.|++++|.+.+..|..+..        +++|+.|++++|.+.+ ..|..+..+++|++|+|++
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcC--------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence            998877 68999999999999999999988888877        6799999999999997 4788999999999999999


Q ss_pred             CcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCcccc-CCCccccCCCCCCCCC
Q 038858          577 NNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFA-TFNESNYKGNPFLCGL  655 (740)
Q Consensus       577 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~  655 (740)
                      |++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|+++.. |..+..++ +++.+++++|||.|+|
T Consensus       483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcccCcEEEccCCCcccCC
Confidence            999999999999999999999999999999999999999999999999999954 54477776 5999999999999999


Q ss_pred             CC
Q 038858          656 PL  657 (740)
Q Consensus       656 ~~  657 (740)
                      +.
T Consensus       562 ~~  563 (606)
T 3vq2_A          562 EH  563 (606)
T ss_dssp             TT
T ss_pred             cc
Confidence            85

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-52  Score=473.92  Aligned_cols=535  Identities=21%  Similarity=0.199  Sum_probs=382.9

Q ss_pred             CEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEE
Q 038858            8 NTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYL   87 (740)
Q Consensus         8 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L   87 (740)
                      +.++.++..++.+ |   ..+.  +++++|++++|.+.+..+..+.. +++|++|++++|.+.+. .+..|.++++|++|
T Consensus        15 ~~~~c~~~~l~~i-P---~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   86 (606)
T 3t6q_A           15 KTYNCENLGLNEI-P---GTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWI-HEDTFQSQHRLDTL   86 (606)
T ss_dssp             TEEECTTSCCSSC-C---TTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred             ceEECCCCCcccC-c---CCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCcccee-ChhhccCccccCee
Confidence            3455555555544 2   1222  35677777777777666666666 77777777777776633 33447777777777


Q ss_pred             ecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEE
Q 038858           88 DMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLD  167 (740)
Q Consensus        88 ~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  167 (740)
                      ++++|  .+.+..+..+.. +++|++|++++|.+.    .+++..+.++++|++|++++|.+.+.....+..+++|++|+
T Consensus        87 ~Ls~n--~l~~~~~~~~~~-l~~L~~L~L~~n~i~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  159 (606)
T 3t6q_A           87 VLTAN--PLIFMAETALSG-PKALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD  159 (606)
T ss_dssp             ECTTC--CCSEECTTTTSS-CTTCCEEECTTSCCS----CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred             eCCCC--cccccChhhhcc-cccccEeeccccCcc----cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence            77777  334444445555 777777777777665    33333567777777777777777653333444477777777


Q ss_pred             ccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCC--EEEccCCCCcc
Q 038858          168 VSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLE--DVDLSHIKMNG  245 (740)
Q Consensus       168 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~  245 (740)
                      +++|.+++..+                                              ..++.+++|+  .|++++|.+.+
T Consensus       160 L~~n~l~~~~~----------------------------------------------~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          160 FQNNAIHYLSK----------------------------------------------EDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             CCSSCCCEECH----------------------------------------------HHHHTTTTCCSEEEECTTCCCCE
T ss_pred             cccCcccccCh----------------------------------------------hhhhhhcccceeEEecCCCccCc
Confidence            77776653222                                              1233333444  44444444443


Q ss_pred             cCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCc--CEEeccCC---cCcccCChhHhhcC--CCCcEEEccCCcCc
Q 038858          246 EFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL--RLLDVSNN---NFQGRIPAEIGDIL--PSLSSFNISMNALD  318 (740)
Q Consensus       246 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~n---~l~~~~~~~~~~~~--~~L~~L~l~~n~~~  318 (740)
                      ..|..+  ....|++|++++|...   +..+..+..+  +.+.+...   ... .++...+..+  .+|++|++++|.++
T Consensus       194 ~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~-~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          194 IEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             ECTTTT--TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCC-CCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             cChhHh--hhccccccccCCchhH---HHHhhhccccchhheechhhcccccc-ccChhHhchhhcCceeEEEeecCccC
Confidence            333332  2234444444444210   0011111111  11111110   000 1222222222  27889999999998


Q ss_pred             ccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCc-cc
Q 038858          319 GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP-QS  397 (740)
Q Consensus       319 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~  397 (740)
                      +..+..|..+++|++|++++|.++ .+|..+. ++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred             ccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence            888888999999999999999988 7877654 78899999999999988877788889999999999998875554 45


Q ss_pred             cccCCCCCeEEccCCcCcccC--CCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcC
Q 038858          398 LSKCLSLEGLHLNNNNLSGKI--PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRL  475 (740)
Q Consensus       398 ~~~l~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l  475 (740)
                      +..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..         
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------  416 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD---------  416 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT---------
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc---------
Confidence            888999999999999988655  678889999999999999998888889999999999999999887432         


Q ss_pred             CccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC---CCcccccccchhhhccccceEEccC
Q 038858          476 NGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI---PPCFDNTALHERRVLSLLSGIDLSC  552 (740)
Q Consensus       476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~~l~~L~~L~l~~  552 (740)
                         .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..   +..+..        +++|+.|++++
T Consensus       417 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------l~~L~~L~Ls~  485 (606)
T 3t6q_A          417 ---AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------LGRLEILVLSF  485 (606)
T ss_dssp             ---TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG--------CTTCCEEECTT
T ss_pred             ---cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc--------CCCccEEECCC
Confidence               2344778899999999999999888999999999999999999987632   233433        68999999999


Q ss_pred             ccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858          553 NKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       553 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  632 (740)
                      |++++..|..|..+++|++|+|++|++++..|..|..+++| +|++++|++++..|..+..+++|+.+++++|++.+..+
T Consensus       486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999989999999999999999999999999999999999 99999999999999989999999999999999987544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-51  Score=477.54  Aligned_cols=545  Identities=20%  Similarity=0.185  Sum_probs=396.1

Q ss_pred             EEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEe
Q 038858            9 TLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLD   88 (740)
Q Consensus         9 ~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~   88 (740)
                      ..|.++++++.+ |    .  -.++|++|++++|.+.+..+..+.. +++|++|++++|...+.+++..|.++++|++|+
T Consensus         8 ~~dcs~~~L~~v-P----~--lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A            8 IAFYRFCNLTQV-P----Q--VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD   79 (844)
T ss_dssp             EEEESCCCSSCC-C----S--SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred             EEEccCCCCCCC-C----C--CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence            456666666666 2    2  4467888888888877776677776 788888888888666566666688888888888


Q ss_pred             cCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCc-cccCCCCCCCEEEccCCccccccC-ccccCCCCCCEE
Q 038858           89 MNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILD-QGLCPLVHLQELHMANNDLRGSLP-WCLANMTSLRTL  166 (740)
Q Consensus        89 L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L  166 (740)
                      |++|  .+.+..+..+.. +++|++|++++|.+.   +.++. ..+.++++|++|++++|.+.+..+ ..++++++|++|
T Consensus        80 Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           80 LGSS--KIYFLHPDAFQG-LFHLFELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             CTTC--CCCEECTTSSCS-CSSCCCEECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCC--cCcccCHhHccC-CcccCEeeCcCCCCC---cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            8888  344444555655 888888888888776   43333 237778888888888888876544 467788888888


Q ss_pred             EccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCC------CCCEEEccC
Q 038858          167 DVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQN------KLEDVDLSH  240 (740)
Q Consensus       167 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~  240 (740)
                      ++++|.+++..+..+..+                   ...+|+.|++ ..+...+..+..+..+.      .|+.|++++
T Consensus       154 ~Ls~N~i~~~~~~~l~~l-------------------~~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~  213 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELEPL-------------------QGKTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSG  213 (844)
T ss_dssp             EEESSCCCCCCSGGGHHH-------------------HHCSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred             ECCCCcCCeeCHHHcccc-------------------cCCccceEEC-CCCccccccccchhhcCCccccCceeEEecCC
Confidence            888887765444321000                   0025566666 33344444443333333      377888887


Q ss_pred             CCCcccCchHhhhcC--CCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhh-cCCCCcEEEccCCcC
Q 038858          241 IKMNGEFPNWLLENN--TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGD-ILPSLSSFNISMNAL  317 (740)
Q Consensus       241 ~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~~  317 (740)
                      |.+.+..+..+...+  ..++.+.+..+.....               +..+.+.+..+..+.. ..++|++|++++|.+
T Consensus       214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l  278 (844)
T 3j0a_A          214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV  278 (844)
T ss_dssp             CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred             CcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcc
Confidence            777766666553322  4455665554332210               1112222111111111 136899999999999


Q ss_pred             cccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccc
Q 038858          318 DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQS  397 (740)
Q Consensus       318 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  397 (740)
                      .+..+..|..+++|+.|++++|.+. .++...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~  357 (844)
T 3j0a_A          279 FSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT  357 (844)
T ss_dssp             CEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred             cccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence            9888889999999999999999998 444445568999999999999999888888999999999999999998888888


Q ss_pred             cccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCc
Q 038858          398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG  477 (740)
Q Consensus       398 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~  477 (740)
                      |..+++|++|++++|.+++     +..+++|+.|++++|+++.. |..   ..+++.|++++|++.+.            
T Consensus       358 ~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l------------  416 (844)
T 3j0a_A          358 FKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENL------------  416 (844)
T ss_dssp             SCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSS------------
T ss_pred             hcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcccc-ccc---ccccceeecccCccccC------------
Confidence            9999999999999999873     23378899999999999843 332   56789999999998732            


Q ss_pred             cCchhhhccccCcEEEcccccccccccc-cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc
Q 038858          478 SIPDRIDGLLRLSHLILAHNNLEGEVPV-QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI  556 (740)
Q Consensus       478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  556 (740)
                      ..+..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+....+.....   ..+..+++|+.|++++|.++
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~  493 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW---DVFEGLSHLQVLYLNHNYLN  493 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS---SCSSCBCCEECCCCCHHHHT
T ss_pred             chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch---hhhcCcccccEEECCCCccc
Confidence            2234456889999999999999865443 4667899999999999997444322111   11223689999999999999


Q ss_pred             ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858          557 GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       557 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  632 (740)
                      +..|..|..+++|+.|+|++|++++..+..+.  ++|+.|++++|++++..|..|   ++|+.+++++|++.+..+
T Consensus       494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            99999999999999999999999988887777  899999999999999888765   589999999999987543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-49  Score=450.48  Aligned_cols=574  Identities=19%  Similarity=0.182  Sum_probs=352.4

Q ss_pred             CCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCE
Q 038858            7 LNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEY   86 (740)
Q Consensus         7 L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~   86 (740)
                      -++++.+++.++.+..    .+.  ++|++|++++|.+.+..+..+.+ +++|++|++++|.+++ +++..|.++++|++
T Consensus        13 ~~~~~c~~~~l~~ip~----~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPD----DIP--SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIET-IEDKAWHGLHHLSN   84 (606)
T ss_dssp             TTEEECTTSCCSSCCT----TSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCE-ECTTTTTTCTTCCE
T ss_pred             CCceEccCCCcccCCC----CCC--CCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccc-cCHHHhhchhhcCE
Confidence            3578888888877732    232  88999999999998887778888 9999999999999984 44556899999999


Q ss_pred             EecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCccccCCCCCCE
Q 038858           87 LDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRT  165 (740)
Q Consensus        87 L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~  165 (740)
                      |++++|  .+.+..+..+.. +++|++|++++|.+.    .++...++++++|++|++++|.+.+ .+|..++++++|++
T Consensus        85 L~Ls~n--~l~~~~p~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  157 (606)
T 3vq2_A           85 LILTGN--PIQSFSPGSFSG-LTSLENLVAVETKLA----SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH  157 (606)
T ss_dssp             EECTTC--CCCCCCTTSSTT-CTTCCEEECTTSCCC----CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred             eECCCC--cccccChhhcCC-cccCCEEEccCCccc----cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence            999999  445555666777 999999999999887    4554479999999999999999986 56889999999999


Q ss_pred             EEccCCcCccccCCCchhhcccccccchhcccccCCCCCCc-cccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCc
Q 038858          166 LDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNF-QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMN  244 (740)
Q Consensus       166 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  244 (740)
                      |++++|.+++..+..+..+                  .... .+..|++ ..+.+....+..+.. .+|+.|++++|.+.
T Consensus       158 L~Ls~n~l~~~~~~~~~~l------------------~~L~~~l~~L~l-~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          158 VDLSYNYIQTITVNDLQFL------------------RENPQVNLSLDM-SLNPIDFIQDQAFQG-IKLHELTLRGNFNS  217 (606)
T ss_dssp             EECCSSCCCEECTTTTHHH------------------HHCTTCCCEEEC-TTCCCCEECTTTTTT-CEEEEEEEESCCSC
T ss_pred             EEccCCcceecChhhhhhh------------------hccccccceeec-cCCCcceeCcccccC-ceeeeeeccCCccc
Confidence            9999999986555432100                  0000 1346777 444444333333333 37888888888877


Q ss_pred             ccCchHhhhcCCCCCEEeccCCcccCCCC------CCCCCCC--CcCEEec-cCCcCcccCChhHhhcCCCCcEEEccCC
Q 038858          245 GEFPNWLLENNTKLESLSLVNDSLAGPFR------LPIHSHK--SLRLLDV-SNNNFQGRIPAEIGDILPSLSSFNISMN  315 (740)
Q Consensus       245 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~l~~~~--~L~~L~l-~~n~l~~~~~~~~~~~~~~L~~L~l~~n  315 (740)
                      +......+++++.++.+.+..+.+.....      ..+..+.  .++.+++ ..+.+.+.+|.  +..+++|++|++++|
T Consensus       218 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~  295 (606)
T 3vq2_A          218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGV  295 (606)
T ss_dssp             HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESC
T ss_pred             hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCc
Confidence            54444445788888887776554432111      0011111  2333444 33344433333  222455555555555


Q ss_pred             cCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCc
Q 038858          316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP  395 (740)
Q Consensus       316 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  395 (740)
                      .+.. +| .+..+++|++|++++|.+. .+|..   .+++|++|++++|...+..  .+..+++|++|++++|.+.+.. 
T Consensus       296 ~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~-  366 (606)
T 3vq2_A          296 SIKY-LE-DVPKHFKWQSLSIIRCQLK-QFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG-  366 (606)
T ss_dssp             CCCC-CC-CCCTTCCCSEEEEESCCCS-SCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE-
T ss_pred             cchh-hh-hccccccCCEEEcccccCc-ccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc-
Confidence            5542 23 4455555555555555552 44421   3455555555555322211  2334444444555444444331 


Q ss_pred             cccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcC
Q 038858          396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRL  475 (740)
Q Consensus       396 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l  475 (740)
                                           ..+..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|++.+.          
T Consensus       367 ---------------------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~----------  414 (606)
T 3vq2_A          367 ---------------------CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV----------  414 (606)
T ss_dssp             ---------------------ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST----------
T ss_pred             ---------------------chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc----------
Confidence                                 013344444555555555555442 224445555555555555554421          


Q ss_pred             CccCc-hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccC-CCCCcccccccchhhhccccceEEccCc
Q 038858          476 NGSIP-DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHG-LIPPCFDNTALHERRVLSLLSGIDLSCN  553 (740)
Q Consensus       476 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n  553 (740)
                         .| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..        +++|+.|++++|
T Consensus       415 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n  483 (606)
T 3vq2_A          415 ---TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------TTNLTFLDLSKC  483 (606)
T ss_dssp             ---TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTS
T ss_pred             ---cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--------CCCCCEEECCCC
Confidence               11 234555666666666666665666666667777777777777665 34555554        467777777777


Q ss_pred             cccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCC-CCCEEEccCCcccccCC
Q 038858          554 KLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN-ALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       554 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~  632 (740)
                      .+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|+++++++|++.+..+
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            777777788888999999999999999888999999999999999999998 6677788887 59999999999987544


Q ss_pred             CCCccccCCCccccCCCCCCCCC-CCCCCCCCCcccccCCCCCCC
Q 038858          633 EMTTQFATFNESNYKGNPFLCGL-PLPICRSPVTMLEASTSNEGD  676 (740)
Q Consensus       633 ~~~~~~~~l~~~~~~~Np~~C~~-~~~~c~~~~~~~~~~~~~~~~  676 (740)
                      .. .....++     .++-...- ....|..|....+.....++.
T Consensus       563 ~~-~~~~~l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~  601 (606)
T 3vq2_A          563 HQ-KFLQWVK-----EQKQFLVNVEQMTCATPVEMNTSLVLDFNN  601 (606)
T ss_dssp             TH-HHHTTTT-----TSSSSBSSGGGCCCC---------------
T ss_pred             cH-HHHHHHH-----cCcccccCCccceeCCChHhCCCEeeeccc
Confidence            21 1111121     11111110 112677777777765554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=419.61  Aligned_cols=470  Identities=20%  Similarity=0.222  Sum_probs=378.0

Q ss_pred             CCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccc
Q 038858          109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYN  188 (740)
Q Consensus       109 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  188 (740)
                      +++++|++++|.+.    .++...|.++++|++|++++|++++..+..|+++++|++|++++|.+++..           
T Consensus        28 ~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----------   92 (570)
T 2z63_A           28 FSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-----------   92 (570)
T ss_dssp             SSCCEEECCSCCCC----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----------
T ss_pred             ccccEEEccCCccC----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC-----------
Confidence            46778888877775    344446777788888888888777666667777888888888877765322           


Q ss_pred             cccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcc
Q 038858          189 NEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL  268 (740)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  268 (740)
                                                         +..+..+++|+.|++++|.+.+..+.. ++.+++|++|++++|.+
T Consensus        93 -----------------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l  136 (570)
T 2z63_A           93 -----------------------------------LGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLI  136 (570)
T ss_dssp             -----------------------------------TTTTTTCTTCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCC
T ss_pred             -----------------------------------HhhhcCccccccccccccccccCCCcc-ccccccccEEecCCCcc
Confidence                                               235677889999999999998544434 48999999999999999


Q ss_pred             cCC-CCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCC----cEEEccCCcCcccCCccccCCCCCcEEEeecccCCC
Q 038858          269 AGP-FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSL----SSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG  343 (740)
Q Consensus       269 ~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  343 (740)
                      .+. .+..+..+++|++|++++|.+.+..+..+.. +++|    ++|++++|.+++..+..|... +|++|++++|....
T Consensus       137 ~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~  214 (570)
T 2z63_A          137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL  214 (570)
T ss_dssp             CCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT
T ss_pred             ceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccc
Confidence            874 5778899999999999999998544444443 6677    899999999998888888766 79999999874331


Q ss_pred             c------------------------------cChhhhhcCc--cCcEEEcCCc-cccccCCcCCCCCCCCCeEEccCCcc
Q 038858          344 E------------------------------IPEHLAIGCV--NLEILVLSNN-NLEGHMFSKNFNLTKLSWLLLEDNHF  390 (740)
Q Consensus       344 ~------------------------------~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~  390 (740)
                      .                              ++...+.+++  .++.++++++ .+.+..+..+..+++|++|++++|.+
T Consensus       215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  294 (570)
T 2z63_A          215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI  294 (570)
T ss_dssp             THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred             cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence            1                              1111111222  2344555555 45556667777889999999999988


Q ss_pred             cccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCC
Q 038858          391 VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL  470 (740)
Q Consensus       391 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  470 (740)
                      .+ +|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++.     
T Consensus       295 ~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~-----  362 (570)
T 2z63_A          295 ER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFK-----  362 (570)
T ss_dssp             CS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEE-----
T ss_pred             hh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcc-----
Confidence            74 56667777 9999999999887 4444  4678899999999988765544  6789999999999987621     


Q ss_pred             CCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCC-CcccccccchhhhccccceEE
Q 038858          471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP-PCFDNTALHERRVLSLLSGID  549 (740)
Q Consensus       471 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~l~~L~~L~  549 (740)
                            +..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..        +++|+.|+
T Consensus       363 ------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~  427 (570)
T 2z63_A          363 ------GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS--------LRNLIYLD  427 (570)
T ss_dssp             ------EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT--------CTTCCEEE
T ss_pred             ------ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc--------CCCCCEEe
Confidence                  12367788999999999999999866555 9999999999999999987765 34544        67999999


Q ss_pred             ccCccccccCCcCccCCCcCcEEeCcCCcCC-CccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858          550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLT-GTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS  628 (740)
Q Consensus       550 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  628 (740)
                      +++|.+.+..|..+..+++|++|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus       428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            9999999999999999999999999999998 578899999999999999999999888999999999999999999999


Q ss_pred             ccCCCCCccccCCCccccCCCCCCCCCCCC
Q 038858          629 GKIPEMTTQFATFNESNYKGNPFLCGLPLP  658 (740)
Q Consensus       629 ~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~  658 (740)
                      +..|..+..+++|+.+++++||+.|+|+..
T Consensus       508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999988899999999999999999999854

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-45  Score=413.54  Aligned_cols=492  Identities=20%  Similarity=0.234  Sum_probs=314.3

Q ss_pred             CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCC
Q 038858           32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFL  111 (740)
Q Consensus        32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L  111 (740)
                      +++++|++++|.+.+..+..+.. +++|++|++++|.+. .+++..|.++++|++|++++|.  +....+..+.. +++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSG-LSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC--CCEECTTTTTT-CTTC
T ss_pred             ccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCc--CCccCHhhhcC-cccc
Confidence            35666666666665554445555 566666666666555 2333345556666666666652  22222233333 5555


Q ss_pred             cEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEEccCCcCccccCCCchhhcccccc
Q 038858          112 KYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNE  190 (740)
Q Consensus       112 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  190 (740)
                      ++|++++|.+.    .++...++++++|++|++++|.+.+ .+|..++++++|++|++++|.++                
T Consensus       103 ~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~----------------  162 (570)
T 2z63_A          103 QKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ----------------  162 (570)
T ss_dssp             CEEECTTSCCC----CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC----------------
T ss_pred             ccccccccccc----cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc----------------
Confidence            55555555544    2332235555555555555555543 23455555555555555555443                


Q ss_pred             cchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCC----CEEeccCC
Q 038858          191 INAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL----ESLSLVND  266 (740)
Q Consensus       191 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~  266 (740)
                                                                            +..+..+ +.+++|    ++|++++|
T Consensus       163 ------------------------------------------------------~~~~~~~-~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          163 ------------------------------------------------------SIYCTDL-RVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             ------------------------------------------------------EECGGGG-HHHHTCTTCCCEEECTTC
T ss_pred             ------------------------------------------------------eecHHHc-cchhccchhhhhcccCCC
Confidence                                                                  3222222 333333    44444444


Q ss_pred             cccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcC------cccCCccccCCCC--CcEEEeec
Q 038858          267 SLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL------DGSIPSSFGNMNF--LQILDLSN  338 (740)
Q Consensus       267 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~------~~~~~~~~~~l~~--L~~L~L~~  338 (740)
                      .+.+..+..+... +|++|++++|.............++.++.+.+....+      .......+.+++.  ++.+++++
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            4444333333332 4555555554322111111222244444444332111      1112222333322  44556665


Q ss_pred             c-cCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCccc
Q 038858          339 N-HLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK  417 (740)
Q Consensus       339 n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~  417 (740)
                      + .+.+..+..+ ..+++|++|++++|.+.+ .+..+..+ +|++|++++|.+.. +|.  ..+++|++|++++|.+.+.
T Consensus       267 ~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          267 LDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             TTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCB
T ss_pred             chhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCccccc
Confidence            5 4443444333 356777777777777764 33445555 78888888887763 332  4677888888888877654


Q ss_pred             CCCCCCCccCcceeeccCCcccCCC--CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcc
Q 038858          418 IPQWLGNLTGLQYIIIPENHLEGPI--PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA  495 (740)
Q Consensus       418 ~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~  495 (740)
                      .+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.              ..+..+..+++|++|+++
T Consensus       341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~--------------~~~~~~~~l~~L~~L~l~  404 (570)
T 2z63_A          341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--------------TMSSNFLGLEQLEHLDFQ  404 (570)
T ss_dssp             CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE--------------EEEEEEETCTTCCEEECT
T ss_pred             ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc--------------cccccccccCCCCEEEcc
Confidence            443  56788888888888887543  566778889999999988876              334447788899999999


Q ss_pred             ccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc-ccCCcCccCCCcCcEEe
Q 038858          496 HNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI-GDIPPQIGNLTRIQTLN  573 (740)
Q Consensus       496 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  573 (740)
                      +|.+.+..+ ..+..+++|++|++++|.+.+..|..+..        +++|+.|++++|.+. +.+|..+..+++|++|+
T Consensus       405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------CCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence            998887655 56888999999999999998888877766        679999999999987 56888999999999999


Q ss_pred             CcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCC
Q 038858          574 LSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEM  634 (740)
Q Consensus       574 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  634 (740)
                      +++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            9999999988999999999999999999999888888999999999999999999887763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.6e-46  Score=415.27  Aligned_cols=495  Identities=18%  Similarity=0.195  Sum_probs=335.6

Q ss_pred             CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858           58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV  137 (740)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~  137 (740)
                      .....+.+++.++ .+|.. +.  ++|++|++++|.  +.+..+..+.. +++|++|++++|.+.    .+++..|.+++
T Consensus         6 ~~~~c~~~~~~l~-~ip~~-~~--~~L~~L~Ls~n~--l~~~~~~~~~~-l~~L~~L~Ls~n~i~----~~~~~~~~~l~   74 (549)
T 2z81_A            6 ASGVCDGRSRSFT-SIPSG-LT--AAMKSLDLSFNK--ITYIGHGDLRA-CANLQVLILKSSRIN----TIEGDAFYSLG   74 (549)
T ss_dssp             TTSEEECTTSCCS-SCCSC-CC--TTCCEEECCSSC--CCEECSSTTSS-CTTCCEEECTTSCCC----EECTTTTTTCT
T ss_pred             CCceEECCCCccc-ccccc-CC--CCccEEECcCCc--cCccChhhhhc-CCcccEEECCCCCcC----ccChhhccccc
Confidence            3344556666665 44443 32  677778887773  34433445555 777888888877776    34444788888


Q ss_pred             CCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCC
Q 038858          138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGY  217 (740)
Q Consensus       138 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  217 (740)
                      +|++|++++|.+.+..+..++++++|++|++++|.+++.                                         
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------------------------------  113 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL-----------------------------------------  113 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS-----------------------------------------
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc-----------------------------------------
Confidence            888888888888876666688888888888888877531                                         


Q ss_pred             CCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858          218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP  297 (740)
Q Consensus       218 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  297 (740)
                          ..+..+..+++|+.|++++|...+.+|...++.+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|
T Consensus       114 ----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~  188 (549)
T 2z81_A          114 ----GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL  188 (549)
T ss_dssp             ----CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THH
T ss_pred             ----chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccc
Confidence                112245567788888888887555665444578888888899888888877888888999999999999886 677


Q ss_pred             hhHhhcCCCCcEEEccCCcCcccC--C-ccccCCCCCcEEEeecccCCCccChhhh---hcCccCcEEEcCCccccccCC
Q 038858          298 AEIGDILPSLSSFNISMNALDGSI--P-SSFGNMNFLQILDLSNNHLTGEIPEHLA---IGCVNLEILVLSNNNLEGHMF  371 (740)
Q Consensus       298 ~~~~~~~~~L~~L~l~~n~~~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~  371 (740)
                      ..++..+++|++|++++|.+++..  + .....+++|+.|++++|.+.+..+..+.   ..+++|+.+++++|.+.+...
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~  268 (549)
T 2z81_A          189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD  268 (549)
T ss_dssp             HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred             hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence            777666889999999999988642  1 2334578889999998887754443322   245667777777776654311


Q ss_pred             cCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccC-----CCCCCCccCcceeeccCCcccCCCCccc
Q 038858          372 SKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI-----PQWLGNLTGLQYIIIPENHLEGPIPVAF  446 (740)
Q Consensus       372 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~~~  446 (740)
                      ...                  .....+..+.+|+.|++.++.+....     +..+...++|+.|++++|.+. .+|..+
T Consensus       269 ~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~  329 (549)
T 2z81_A          269 FNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF  329 (549)
T ss_dssp             CCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred             ccc------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence            000                  00012234445555555555443210     111122356777777777766 333333


Q ss_pred             -cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc--ccccCCCcccEEeCCCccc
Q 038858          447 -CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP--VQLCGLNQLQLLDLSDNKL  523 (740)
Q Consensus       447 -~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l  523 (740)
                       ..+++|++|++++|++.+..|.          .+..+..+++|++|++++|.+++..+  ..+..+++|++|++++|++
T Consensus       330 ~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          330 SQHLKSLEFLDLSENLMVEEYLK----------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHH----------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HhcCccccEEEccCCcccccccc----------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence             4577777777777776532110          01224566777777777777765432  4467777788888888877


Q ss_pred             cCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcC
Q 038858          524 HGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL  603 (740)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  603 (740)
                      + .+|..+..        +++|+.|++++|++++ +|..+  .++|++|++++|++++..    ..+++|++|++++|++
T Consensus       400 ~-~lp~~~~~--------~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          400 H-PMPDSCQW--------PEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKL  463 (549)
T ss_dssp             C-CCCSCCCC--------CTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred             c-cCChhhcc--------cccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCcc
Confidence            6 34444443        4678888888888763 33332  257899999999888643    5788999999999999


Q ss_pred             CccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          604 NGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       604 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      + .+|. ...+++|++|++++|++++.+|+.+..+++++.+++++|||.|+|+
T Consensus       464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             C-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            8 5665 4678899999999999999888888889999999999999999997

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.3e-45  Score=413.96  Aligned_cols=534  Identities=20%  Similarity=0.177  Sum_probs=393.6

Q ss_pred             CCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCC
Q 038858           57 PSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPL  136 (740)
Q Consensus        57 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l  136 (740)
                      +++++|+|++|.++ .+++..|.++++|++|+|++|.|  ..-.+..+.. +++|++|+|++|+++    .++...|.++
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~-L~~L~~L~Ls~N~l~----~l~~~~f~~L  123 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQS-LSHLSTLILTGNPIQ----SLALGAFSGL  123 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCC--CEECTTTTTT-CTTCCEEECTTCCCC----EECGGGGTTC
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcC-CCCCCEEEccCCcCC----CCCHHHhcCC
Confidence            36777777777776 44555577777777777777743  2222223334 777777777777765    5555567777


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCC
Q 038858          137 VHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSG  216 (740)
Q Consensus       137 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  216 (740)
                      ++|++|++++|++++..+..|+++++|++|++++|.+.+.                                        
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~----------------------------------------  163 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------------------------  163 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------------------------
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC----------------------------------------
Confidence            7777777777777766556677777777777777776521                                        


Q ss_pred             CCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCC----CCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcC
Q 038858          217 YEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK----LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF  292 (740)
Q Consensus       217 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l  292 (740)
                           ..|..+..+++|+.|++++|.+++..+..+ +.+.+    ...++++.|.+....+..+ ....++.+++.+|..
T Consensus       164 -----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~  236 (635)
T 4g8a_A          164 -----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFD  236 (635)
T ss_dssp             -----CCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCS
T ss_pred             -----CCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccc
Confidence                 234456677788888888888876655553 33333    3467788887766544333 334567888888866


Q ss_pred             cccCChhHhhcCCCCcEEEccCCc------CcccCCccccCCCCCcEEEeecccCCCcc--ChhhhhcCccCcEEEcCCc
Q 038858          293 QGRIPAEIGDILPSLSSFNISMNA------LDGSIPSSFGNMNFLQILDLSNNHLTGEI--PEHLAIGCVNLEILVLSNN  364 (740)
Q Consensus       293 ~~~~~~~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n  364 (740)
                      ...++...+..++.++...+..+.      +.......+..+..+....+..+......  ....+....+++.+.+.++
T Consensus       237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  316 (635)
T 4g8a_A          237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV  316 (635)
T ss_dssp             SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred             cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence            545555555557777766664332      22233445566667777776655433111  1122335678889999888


Q ss_pred             cccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC--CC
Q 038858          365 NLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG--PI  442 (740)
Q Consensus       365 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~  442 (740)
                      .+....  .+.....++.|++.+|.+....+   ..+..|+.+++..|.....  .....+++|+.+++++|.+..  ..
T Consensus       317 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~  389 (635)
T 4g8a_A          317 TIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCC  389 (635)
T ss_dssp             EEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred             cccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhcccccccccc
Confidence            876543  34456789999999998876544   3467889999999987633  234578999999999998753  34


Q ss_pred             CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc-ccccCCCcccEEeCCCc
Q 038858          443 PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDN  521 (740)
Q Consensus       443 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n  521 (740)
                      +..+..+.+|+.+++..+...              ..+..+..+++|+.+++..+......+ ..+..+++++.++++.|
T Consensus       390 ~~~~~~~~~L~~L~~~~~~~~--------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n  455 (635)
T 4g8a_A          390 SQSDFGTISLKYLDLSFNGVI--------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  455 (635)
T ss_dssp             CHHHHSCSCCCEEECCSCSEE--------------EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred             ccchhhhhhhhhhhccccccc--------------cccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            556677889999999988775              344557788999999999887765543 56888999999999999


Q ss_pred             cccCCCCCcccccccchhhhccccceEEccCcccc-ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCC
Q 038858          522 KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI-GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH  600 (740)
Q Consensus       522 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  600 (740)
                      .+.+..+..+..        ++.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus       456 ~l~~~~~~~~~~--------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          456 HTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccc--------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            999888887776        579999999999854 46788999999999999999999999999999999999999999


Q ss_pred             CcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccc-cCCCccccCCCCCCCCCCC-------------------CCC
Q 038858          601 NKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQF-ATFNESNYKGNPFLCGLPL-------------------PIC  660 (740)
Q Consensus       601 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~-------------------~~c  660 (740)
                      |++++..|..|..+++|++|++++|++++..|+.+..+ ++|+.+++++|||.|+|++                   ..|
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C  607 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC  607 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBB
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCcee
Confidence            99999999999999999999999999999999988887 6899999999999999974                   147


Q ss_pred             CCCCcccccCCCCC
Q 038858          661 RSPVTMLEASTSNE  674 (740)
Q Consensus       661 ~~~~~~~~~~~~~~  674 (740)
                      +.|...+|+.+..+
T Consensus       608 ~~P~~~~g~~l~~~  621 (635)
T 4g8a_A          608 ATPSDKQGMPVLSL  621 (635)
T ss_dssp             CSSTTTTTCBGGGC
T ss_pred             CCchHHCCCEeeee
Confidence            77777766655433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-45  Score=407.12  Aligned_cols=371  Identities=20%  Similarity=0.186  Sum_probs=256.0

Q ss_pred             CCCCCEEeccCCcccCC-CCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCC--cEEEccCCcC--cccCCccccCCC
Q 038858          255 NTKLESLSLVNDSLAGP-FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSL--SSFNISMNAL--DGSIPSSFGNMN  329 (740)
Q Consensus       255 l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~~~~l~  329 (740)
                      +++|++|++++|.+.+. .+..++.+++|++|++++|.+.+   .. +..+++|  ++|++++|.+  .+..|..+..+.
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecccccccccccccccccc
Confidence            34444444444444331 22334444444444444444442   11 1123444  5555555555  444444444443


Q ss_pred             -CCcEEEeecccCCCccChhhhhcCccCcEEEcCCcc-------ccccCCcCCCCCCCCCeEEccCCcccccCcccc---
Q 038858          330 -FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN-------LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSL---  398 (740)
Q Consensus       330 -~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---  398 (740)
                       ....+++++|.+.+.++...+..+++|+.+++++|.       +.+..+ .+..+++|+.|++++|.+.+.....+   
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  243 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL  243 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH
Confidence             122345555555555555444556666666666654       333332 45667778888887777654322211   


Q ss_pred             ccCCCCCeEEccCCcCcccCCCCC-----CCccCcceeeccCCcccCCCCccccCC---CCccEEeccCCcCCCCCCCCC
Q 038858          399 SKCLSLEGLHLNNNNLSGKIPQWL-----GNLTGLQYIIIPENHLEGPIPVAFCQL---DSLQILGISDNNISGSLPSYL  470 (740)
Q Consensus       399 ~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l  470 (740)
                      ...++|++|++++|.+.+.+|..+     ..+++|+.+++++|.+ ......+..+   .+|+.|++++|.+.+.     
T Consensus       244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-----  317 (520)
T 2z7x_B          244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-----  317 (520)
T ss_dssp             HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC-----
T ss_pred             hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc-----
Confidence            124588889999888887777777     7888999999999888 2332444443   5799999999987621     


Q ss_pred             CCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccC--CCCCcccccccchhhhccccceE
Q 038858          471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHG--LIPPCFDNTALHERRVLSLLSGI  548 (740)
Q Consensus       471 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~l~~L~~L  548 (740)
                               + .+..+++|++|++++|.+++..|..++.+++|+.|++++|++.+  ..|..+..        +++|+.|
T Consensus       318 ---------~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------l~~L~~L  379 (520)
T 2z7x_B          318 ---------L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ--------MKSLQQL  379 (520)
T ss_dssp             ---------C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------CTTCCEE
T ss_pred             ---------c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------CCCCCEE
Confidence                     1 12567889999999999998888889999999999999999875  22333444        6799999


Q ss_pred             EccCccccccCCc-CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858          549 DLSCNKLIGDIPP-QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL  627 (740)
Q Consensus       549 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  627 (740)
                      ++++|.+.+.+|. .+..+++|++|++++|++++..+..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus       380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence            9999999974554 588899999999999999987777665  79999999999999 7888888999999999999999


Q ss_pred             cccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          628 SGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       628 ~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      ++..+..+..+++++.+++++||+.|+|+.
T Consensus       457 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            976555578899999999999999999974

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.8e-44  Score=397.11  Aligned_cols=489  Identities=19%  Similarity=0.216  Sum_probs=320.5

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCC
Q 038858            4 FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKS   83 (740)
Q Consensus         4 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~   83 (740)
                      |+...+.|.+++.++.+.+    .+  .++|++|++++|.+.+..+..+.. +++|++|++++|.+.+ +++..|.++++
T Consensus         4 C~~~~~c~~~~~~l~~ip~----~~--~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~-~~~~~~~~l~~   75 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPS----GL--TAAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINT-IEGDAFYSLGS   75 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCS----CC--CTTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCE-ECTTTTTTCTT
T ss_pred             CCCCceEECCCCccccccc----cC--CCCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCc-cChhhcccccc
Confidence            3445567888888877633    23  378999999999998877777877 8999999999999884 44456899999


Q ss_pred             CCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCC-CCCccccCCCCCCCEEEccCCccccccC-ccccCCC
Q 038858           84 LEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSS-RILDQGLCPLVHLQELHMANNDLRGSLP-WCLANMT  161 (740)
Q Consensus        84 L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~  161 (740)
                      |++|++++|  .+.+..+..++. +++|++|++++|.+.   . ..+. .+.++++|++|++++|.+.+.++ ..+++++
T Consensus        76 L~~L~Ls~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~---~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           76 LEHLDLSDN--HLSSLSSSWFGP-LSSLKYLNLMGNPYQ---TLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             CCEEECTTS--CCCSCCHHHHTT-CTTCCEEECTTCCCS---SSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             CCEEECCCC--ccCccCHHHhcc-CCCCcEEECCCCccc---ccchhh-hhhccCCccEEECCCCccccccCHhhhhccc
Confidence            999999999  445555555766 999999999998886   3 2333 78889999999999998443444 5788899


Q ss_pred             CCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCC
Q 038858          162 SLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHI  241 (740)
Q Consensus       162 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  241 (740)
                      +|++|++++|.+.+..|.                                              .+..+++|+.|+++++
T Consensus       149 ~L~~L~L~~n~l~~~~~~----------------------------------------------~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQ----------------------------------------------SLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EEEEEEEEETTCCEECTT----------------------------------------------TTTTCSEEEEEEEECS
T ss_pred             ccCeeeccCCcccccChh----------------------------------------------hhhccccCceEecccC
Confidence            999999999988754443                                              4455667777777777


Q ss_pred             CCcccCchHhhhcCCCCCEEeccCCcccCCC---CCCCCCCCCcCEEeccCCcCcccCChhHh---hcCCCCcEEEccCC
Q 038858          242 KMNGEFPNWLLENNTKLESLSLVNDSLAGPF---RLPIHSHKSLRLLDVSNNNFQGRIPAEIG---DILPSLSSFNISMN  315 (740)
Q Consensus       242 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~l~~n  315 (740)
                      .+. .+|..+++.+++|++|++++|.+.+..   ......+++|++|++++|.+.+..+..+.   ..+++|+.+++++|
T Consensus       183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             BST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             ccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            765 556666677888999999988887642   11234578899999999888765544433   23678888888888


Q ss_pred             cCcccC------CccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCc
Q 038858          316 ALDGSI------PSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNH  389 (740)
Q Consensus       316 ~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  389 (740)
                      .+.+..      ...+..+++|+.|++.++.+... ..  +..+                 ...+...++|+.|++++|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~--~~~l-----------------~~~~~~~~~L~~L~l~~n~  321 (549)
T 2z81_A          262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF-YL--FYDL-----------------STVYSLLEKVKRITVENSK  321 (549)
T ss_dssp             EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG-GG--SCCC-----------------CHHHHHSTTCCEEEEESSC
T ss_pred             cccccccccccchhhhhhhcccccccccccccchh-hh--cccc-----------------hhhhhhcccceEEEeccCc
Confidence            766421      12345566666676666654411 00  0000                 0011124567777777777


Q ss_pred             ccccCcccc-ccCCCCCeEEccCCcCcccC---CCCCCCccCcceeeccCCcccCCCC--ccccCCCCccEEeccCCcCC
Q 038858          390 FVEEIPQSL-SKCLSLEGLHLNNNNLSGKI---PQWLGNLTGLQYIIIPENHLEGPIP--VAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       390 ~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~  463 (740)
                      +.. +|..+ ..+++|++|++++|.+.+..   +..+..+++|+.|++++|.+++..+  ..+..+++|++|++++|+++
T Consensus       322 l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          322 VFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             CCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence            653 33333 46777888888887776543   2346677888888888888775432  45777888888888888876


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS  543 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~  543 (740)
                                    .+|..+..+++|++|++++|.+++. +..+  .++|++|++++|++++...    .        ++
T Consensus       401 --------------~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~~----~--------l~  451 (549)
T 2z81_A          401 --------------PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFSL----F--------LP  451 (549)
T ss_dssp             --------------CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCCC----C--------CT
T ss_pred             --------------cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhcc----c--------CC
Confidence                          4555667778888888888887732 2222  1466666666666654321    1        23


Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCcc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGK  606 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  606 (740)
                      +|++|++++|+++ .+|. ...+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus       452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            4455555555444 2332 23344444444444444444444444444444444444444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-45  Score=416.58  Aligned_cols=371  Identities=17%  Similarity=0.236  Sum_probs=258.2

Q ss_pred             CCcccCCCCCCCCCCCCcCEEeccCCcCccc-----------------CChhHh--hcCCCCcEEEccCCcCcccCCccc
Q 038858          265 NDSLAGPFRLPIHSHKSLRLLDVSNNNFQGR-----------------IPAEIG--DILPSLSSFNISMNALDGSIPSSF  325 (740)
Q Consensus       265 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-----------------~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~  325 (740)
                      +|.+++ ++..++.+++|++|++++|.+++.                 +|..+.  . +++|++|++++|.+.+.+|..|
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHH
Confidence            355555 455666677777777777777653                 666655  4 6777777777777777777777


Q ss_pred             cCCCCCcEEEeeccc-CCC-ccChhhhh-----cCccCcEEEcCCccccccCCc--CCCCCCCCCeEEccCCcccccCcc
Q 038858          326 GNMNFLQILDLSNNH-LTG-EIPEHLAI-----GCVNLEILVLSNNNLEGHMFS--KNFNLTKLSWLLLEDNHFVEEIPQ  396 (740)
Q Consensus       326 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~  396 (740)
                      .++++|++|++++|+ +++ .+|..+..     .+++|++|++++|.++ ..+.  .+..+++|++|++++|++.+.+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            777777777777777 765 56665541     1377778888877777 4444  56777778888888887776666 


Q ss_pred             ccccCCCCCeEEccCCcCcccCCCCCCCccC-cceeeccCCcccCCCCccccCCC--CccEEeccCCcCCCCCCCCCCCC
Q 038858          397 SLSKCLSLEGLHLNNNNLSGKIPQWLGNLTG-LQYIIIPENHLEGPIPVAFCQLD--SLQILGISDNNISGSLPSYLSYN  473 (740)
Q Consensus       397 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~n  473 (740)
                      .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.  +|+.|++++|.+.+..|..+...
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            6777777888888888777 66667777777 888888888777 5566665543  78888888877775444322100


Q ss_pred             cCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCc
Q 038858          474 RLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN  553 (740)
Q Consensus       474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n  553 (740)
                      .      .....+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+... ....+.+++|+.|++++|
T Consensus       426 ~------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~-~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          426 D------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE-NENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             C------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET-TEECTTGGGCCEEECCSS
T ss_pred             c------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc-cccccccCCccEEECcCC
Confidence            0      001145678888888888875555556667888888888888874443333321 011222347888888888


Q ss_pred             cccccCCcCcc--CCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC------CCCcCCccCchhhhcCCCCCEEEccCC
Q 038858          554 KLIGDIPPQIG--NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL------YHNKLNGKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       554 ~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      .++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|++|++      ++|++.+.+|..+..+++|++|++++|
T Consensus       499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence            888 5666665  78888888888888886 6777778888888888      456777788888888888888888888


Q ss_pred             cccccCCCCCccccCCCccccCCCCCCC
Q 038858          626 NLSGKIPEMTTQFATFNESNYKGNPFLC  653 (740)
Q Consensus       626 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C  653 (740)
                      ++ +.+|..+.  ++|+.+++++||+.|
T Consensus       577 ~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          577 DI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             cC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            88 45565433  678888888888877

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-45  Score=411.82  Aligned_cols=377  Identities=21%  Similarity=0.224  Sum_probs=219.1

Q ss_pred             CchhhcCCCCCCEEEccCCCCccc-----------------CchHhhh--cCCCCCEEeccCCcccCCCCCCCCCCCCcC
Q 038858          223 FPKFLHHQNKLEDVDLSHIKMNGE-----------------FPNWLLE--NNTKLESLSLVNDSLAGPFRLPIHSHKSLR  283 (740)
Q Consensus       223 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  283 (740)
                      +|..++++++|+.|++++|.+++.                 +|..+ +  ++++|++|++++|.+.+..+..+..+++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            455555555666666666655543                 44443 3  455555555555555555555555555555


Q ss_pred             EEeccCCc-Ccc-cCChhHhhc-----CCCCcEEEccCCcCcccCCc--cccCCCCCcEEEeecccCCCccChhhhhcCc
Q 038858          284 LLDVSNNN-FQG-RIPAEIGDI-----LPSLSSFNISMNALDGSIPS--SFGNMNFLQILDLSNNHLTGEIPEHLAIGCV  354 (740)
Q Consensus       284 ~L~l~~n~-l~~-~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  354 (740)
                      +|++++|. +++ .+|..++..     +++|++|++++|.++ .+|.  .+.++++|++|++++|.++|.+|        
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------  347 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--------  347 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--------
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--------
Confidence            55555554 444 444444431     144555555555444 3444  44444444444444444444444        


Q ss_pred             cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCC-CCeEEccCCcCcccCCCCCCCcc--Cccee
Q 038858          355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS-LEGLHLNNNNLSGKIPQWLGNLT--GLQYI  431 (740)
Q Consensus       355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~l~~l~--~L~~L  431 (740)
                                        .+..+++|++|++++|++. .+|..+..+++ |++|++++|.++ .+|..+...+  +|+.|
T Consensus       348 ------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L  407 (636)
T 4eco_A          348 ------------------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI  407 (636)
T ss_dssp             ------------------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred             ------------------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence                              4444555555555555554 34444555555 556666655555 4444444432  56666


Q ss_pred             eccCCcccCCCCcccc-------CCCCccEEeccCCcCCCCCCCCCCCCcCCccCch-hhhccccCcEEEcccccccccc
Q 038858          432 IIPENHLEGPIPVAFC-------QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD-RIDGLLRLSHLILAHNNLEGEV  503 (740)
Q Consensus       432 ~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~  503 (740)
                      ++++|.+.+..|..+.       .+++|++|++++|.++              .+|. .+..+++|++|++++|.++...
T Consensus       408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--------------~lp~~~~~~l~~L~~L~Ls~N~l~~i~  473 (636)
T 4eco_A          408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--------------KFPKELFSTGSPLSSINLMGNMLTEIP  473 (636)
T ss_dssp             ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--------------SCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred             ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC--------------cCCHHHHccCCCCCEEECCCCCCCCcC
Confidence            6666666555555555       5556666666666654              2222 3344666666666666666333


Q ss_pred             cccccCC-------CcccEEeCCCccccCCCCCccc--ccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeC
Q 038858          504 PVQLCGL-------NQLQLLDLSDNKLHGLIPPCFD--NTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNL  574 (740)
Q Consensus       504 ~~~l~~l-------~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  574 (740)
                      +..+...       ++|+.|++++|.++ .+|..+.  .        +++|+.|++++|++++ +|..+..+++|++|+|
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~--------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT--------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT--------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred             HHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc--------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence            3333322       27777777777776 3444443  2        5677777777777775 6777777788888887


Q ss_pred             ------cCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccc--cCCCcccc
Q 038858          575 ------SHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQF--ATFNESNY  646 (740)
Q Consensus       575 ------~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~~~~  646 (740)
                            ++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.|++++|++.......+...  .....+.+
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~  620 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY  620 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEEC
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeec
Confidence                  56778888899999999999999999999 47777655  799999999998886554432221  22233444


Q ss_pred             CCCCCCCCCC
Q 038858          647 KGNPFLCGLP  656 (740)
Q Consensus       647 ~~Np~~C~~~  656 (740)
                      ..+...|+|+
T Consensus       621 ~~~~~i~~C~  630 (636)
T 4eco_A          621 DKTQDIRGCD  630 (636)
T ss_dssp             CTTSEEESCG
T ss_pred             CCccccCCCc
Confidence            4555556665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-43  Score=404.03  Aligned_cols=484  Identities=19%  Similarity=0.198  Sum_probs=315.7

Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEEEc-cCCcCccccCCCchhh--cccccccchh---cccccCCCCCCccccE
Q 038858          137 VHLQELHMANNDLRGSLPWCLANMTSLRTLDV-SSNQLTGSISSSPLIL--DAYNNEINAE---ITESHSLTAPNFQLKS  210 (740)
Q Consensus       137 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~L~~  210 (740)
                      .+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.|..+......  ++........   ............++..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            47899999999999999999999999999999 8898877644321000  0000000000   0000000000000000


Q ss_pred             E---EccCCCCCCCCCchhhcCCCCCCEEEccC--CCCcccCchHhhhcCCCCCEEeccCCcccC---------------
Q 038858          211 L---SLSSGYEDGVTFPKFLHHQNKLEDVDLSH--IKMNGEFPNWLLENNTKLESLSLVNDSLAG---------------  270 (740)
Q Consensus       211 L---~l~~~~~~~~~~~~~l~~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------  270 (740)
                      +   .+.....   ..+........++.+.+..  |.+++ +|..+ +++++|++|++++|.+++               
T Consensus       403 l~~~~l~~~~~---~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~  477 (876)
T 4ecn_A          403 LLQDAINRNPE---MKPIKKDSRISLKDTQIGNLTNRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA  477 (876)
T ss_dssp             HHHHHHHTCTT---SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHhhhCcc---ccccccccccchhhceeccccCcccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence            0   0000000   0000001112233333332  55555 56654 667777777777777766               


Q ss_pred             --CCCCCCC--CCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCc-Ccc-cCCccccC-------CCCCcEEEee
Q 038858          271 --PFRLPIH--SHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA-LDG-SIPSSFGN-------MNFLQILDLS  337 (740)
Q Consensus       271 --~~~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~-------l~~L~~L~L~  337 (740)
                        ..|..++  .+++|++|++++|.+.+.+|..+.. +++|++|++++|+ +++ .+|..+..       +++|++|+++
T Consensus       478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             cccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence              2555655  7777788888777777777766655 7778888887776 665 56654443       3478888888


Q ss_pred             cccCCCccCh-hhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCC-CCeEEccCCcCc
Q 038858          338 NNHLTGEIPE-HLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS-LEGLHLNNNNLS  415 (740)
Q Consensus       338 ~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~  415 (740)
                      +|.++ .+|. ..+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|++. .+|..+..+++ |++|++++|.++
T Consensus       557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            88887 7776 233467788888888888773 33 6777788888888888877 56666777777 888888888877


Q ss_pred             ccCCCCCCCccC--cceeeccCCcccCCCCccc---c--CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhh-hccc
Q 038858          416 GKIPQWLGNLTG--LQYIIIPENHLEGPIPVAF---C--QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLL  487 (740)
Q Consensus       416 ~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~-~~l~  487 (740)
                       .+|..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.+.              .+|..+ ..++
T Consensus       633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--------------~lp~~~~~~l~  697 (876)
T 4ecn_A          633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--------------KFPTELFATGS  697 (876)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--------------SCCHHHHHTTC
T ss_pred             -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--------------ccCHHHHccCC
Confidence             66666665543  8888888888876554322   2  2347888888888776              444443 4678


Q ss_pred             cCcEEEcccccccccccccccC-------CCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCG-------LNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP  560 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~-------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  560 (740)
                      +|+.|++++|.++...+..+..       +++|+.|+|++|+++ .+|..+..      ..+++|+.|++++|.+++ +|
T Consensus       698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------~~l~~L~~L~Ls~N~L~~-lp  769 (876)
T 4ecn_A          698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------TTLPYLSNMDVSYNCFSS-FP  769 (876)
T ss_dssp             CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------TTCTTCCEEECCSSCCSS-CC
T ss_pred             CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------ccCCCcCEEEeCCCCCCc-cc
Confidence            8888888888887333333332       237888888888887 44555430      015788888888888886 67


Q ss_pred             cCccCCCcCcEEeCcC------CcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCC
Q 038858          561 PQIGNLTRIQTLNLSH------NNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEM  634 (740)
Q Consensus       561 ~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  634 (740)
                      ..+..+++|+.|+|++      |++.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..
T Consensus       770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred             hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence            7788888888888866      777888888888899999999999988 57777654  68899999999888776665


Q ss_pred             CccccCCCccccCCCCCCC--CCC
Q 038858          635 TTQFATFNESNYKGNPFLC--GLP  656 (740)
Q Consensus       635 ~~~~~~l~~~~~~~Np~~C--~~~  656 (740)
                      +..........+.+|++.|  +|+
T Consensus       847 ~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          847 VCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             GHHHHHTTCCEEECCTTSEEESCG
T ss_pred             ccccccchheeecCCCccccCCCC
Confidence            5555555667777777665  665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=384.39  Aligned_cols=455  Identities=16%  Similarity=0.130  Sum_probs=267.5

Q ss_pred             CEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCC
Q 038858           60 KSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHL  139 (740)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L  139 (740)
                      ++|++++|.++ .+|.. +.  ++|++|++++|  .+.+..+..+.. +++|++|++++|.+.    .+++..|.++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n--~i~~~~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L   71 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQN--YISELWTSDILS-LSKLRILIISHNRIQ----YLDISVFKFNQEL   71 (520)
T ss_dssp             CEEECTTSCCS-SCCCS-CC--TTCSEEECCSS--CCCCCCHHHHTT-CTTCCEEECCSSCCC----EEEGGGGTTCTTC
T ss_pred             ceEecCCCCcc-ccccc-cc--ccccEEECCCC--cccccChhhccc-cccccEEecCCCccC----CcChHHhhcccCC
Confidence            35666666666 34432 33  66666666666  333333444554 666666666666655    3323356666666


Q ss_pred             CEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCC
Q 038858          140 QELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYED  219 (740)
Q Consensus       140 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  219 (740)
                      ++|++++|+++ .+|..  .+++|++|++++|.+++.                                           
T Consensus        72 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~-------------------------------------------  105 (520)
T 2z7x_B           72 EYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDAL-------------------------------------------  105 (520)
T ss_dssp             CEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSC-------------------------------------------
T ss_pred             CEEecCCCcee-ecCcc--ccCCccEEeccCCccccc-------------------------------------------
Confidence            66666666666 33433  566666666666665421                                           


Q ss_pred             CCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCC--CEEeccCCcc--cCCCCCCCCCCC-CcCEEeccCCcCcc
Q 038858          220 GVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL--ESLSLVNDSL--AGPFRLPIHSHK-SLRLLDVSNNNFQG  294 (740)
Q Consensus       220 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l~~  294 (740)
                        .+|..++.+++|+.|++++|.+.+.   . +..+++|  ++|++++|.+  .+..+..+..+. +...+++++|.+.+
T Consensus       106 --~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~  179 (520)
T 2z7x_B          106 --PICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH  179 (520)
T ss_dssp             --CCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred             --cchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence              1233455566666666666666541   1 2455556  7777777666  444444444433 23355667777666


Q ss_pred             cCChhHhhcCCCCcEEEccCCc-------CcccCCccccCCCCCcEEEeecccCCCccChhhhh--cCccCcEEEcCCcc
Q 038858          295 RIPAEIGDILPSLSSFNISMNA-------LDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI--GCVNLEILVLSNNN  365 (740)
Q Consensus       295 ~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~  365 (740)
                      .++...+..+++|+.|++++|.       +.+.++ .+..+++|+.|++++|.+.+..+.....  ..++|++|++++|.
T Consensus       180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (520)
T 2z7x_B          180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK  258 (520)
T ss_dssp             CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred             hhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence            6666555557777778777775       444444 5777888888888888776433222211  24578888888888


Q ss_pred             ccccCCcCC-----CCCCCCCeEEccCCcccccCc-cccccC---CCCCeEEccCCcCcccCCCCCCCccCcceeeccCC
Q 038858          366 LEGHMFSKN-----FNLTKLSWLLLEDNHFVEEIP-QSLSKC---LSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN  436 (740)
Q Consensus       366 l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  436 (740)
                      +.+..+..+     ..+++|+.+++++|.+  .+| ..+..+   .+|++|++++|.+....  .+..+++|++|++++|
T Consensus       259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n  334 (520)
T 2z7x_B          259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN  334 (520)
T ss_dssp             EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred             ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence            776666655     6677777778877777  333 333333   56778888877765321  1246677777777777


Q ss_pred             cccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc-ccccCCCcccE
Q 038858          437 HLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VQLCGLNQLQL  515 (740)
Q Consensus       437 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~  515 (740)
                      .+++..+..+..+++|++|++++|++++.           +.+|..+..+++|++|++++|.+++.+| ..+..+++|+.
T Consensus       335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          335 LLTDTVFENCGHLTELETLILQMNQLKEL-----------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCTTTTTTCCCCSSCCEEECCSSCCCBH-----------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             ccChhhhhhhccCCCCCEEEccCCccCcc-----------ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            77766666677777777777777766521           0233455666666666666666665233 23555555666


Q ss_pred             EeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcE
Q 038858          516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIES  595 (740)
Q Consensus       516 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  595 (740)
                      |++++|++++.                                .|..+.  ++|+.|++++|+++ .+|..+..+++|++
T Consensus       404 L~Ls~N~l~~~--------------------------------~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~  448 (520)
T 2z7x_B          404 LNMSSNILTDT--------------------------------IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQE  448 (520)
T ss_dssp             EECCSSCCCGG--------------------------------GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred             EECcCCCCCcc--------------------------------hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence            66665555433                                333222  45555666666555 34444445666666


Q ss_pred             EECCCCcCCccCchh-hhcCCCCCEEEccCCcccc
Q 038858          596 LDLYHNKLNGKIPCQ-LVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       596 L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~  629 (740)
                      |++++|++++ +|.. +..+++|++|++++|++++
T Consensus       449 L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          449 LNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence            6666666653 3332 5556666666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9e-42  Score=388.89  Aligned_cols=516  Identities=21%  Similarity=0.237  Sum_probs=290.0

Q ss_pred             CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCC
Q 038858           32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFL  111 (740)
Q Consensus        32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L  111 (740)
                      +++++|+|++|.++...+..|.. +++|++|+|++|.+. .+++..|.++++|++|+|++|++  . .++.....++++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l--~-~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI--Q-SLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC--C-EECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC--C-CCCHHHhcCCCCC
Confidence            57899999999998877778888 999999999999988 55666799999999999999954  3 3444333349999


Q ss_pred             cEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEEccCCcCccccCCCchhhcccccc
Q 038858          112 KYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNE  190 (740)
Q Consensus       112 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  190 (740)
                      ++|++++|+++    .++...|+++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+..+.     
T Consensus       127 ~~L~Ls~N~l~----~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~-----  197 (635)
T 4g8a_A          127 QKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-----  197 (635)
T ss_dssp             CEEECTTSCCC----CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-----
T ss_pred             CEEECCCCcCC----CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh-----
Confidence            99999999887    5666578999999999999999875 3577888999999999999998865544321100     


Q ss_pred             cchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccC
Q 038858          191 INAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAG  270 (740)
Q Consensus       191 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  270 (740)
                                  ........+++ ..+.... ++........++.+++.++......+...+..+..++...+..+....
T Consensus       198 ------------~l~~~~~~~~l-s~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          198 ------------QMPLLNLSLDL-SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             ------------TCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             ------------hhhhhhhhhhc-ccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence                        00002233444 2222221 112222333556677777665544444445666666666554332211


Q ss_pred             ------CCCCCCCCCCCcCEEeccCCcCcc---cCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccC
Q 038858          271 ------PFRLPIHSHKSLRLLDVSNNNFQG---RIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL  341 (740)
Q Consensus       271 ------~~~~~l~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  341 (740)
                            .....+.....+...++..+....   ..+ ..+....+++.+.+.++.+...  ..+.....++.|++.+|.+
T Consensus       264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~  340 (635)
T 4g8a_A          264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII-DLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKF  340 (635)
T ss_dssp             SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT-TTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEE
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccccchh-hhhhhhcccccccccccccccc--cccccchhhhhhhcccccc
Confidence                  111222233333333333322110   111 1112234555555555544421  1233444555555555554


Q ss_pred             CCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc--CccccccCCCCCeEEccCCcCcccCC
Q 038858          342 TGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE--IPQSLSKCLSLEGLHLNNNNLSGKIP  419 (740)
Q Consensus       342 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~  419 (740)
                      . .++..   .++.|+.+++..|......  ....+++|+.|++++|.+...  .+..+..+.+|+++++..+... ..+
T Consensus       341 ~-~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~  413 (635)
T 4g8a_A          341 G-QFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS  413 (635)
T ss_dssp             S-SCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred             c-CcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence            4 22221   2344555555554433221  122344555555555544321  2223334444455554444443 222


Q ss_pred             CCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccc
Q 038858          420 QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL  499 (740)
Q Consensus       420 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  499 (740)
                      ..                        +..+++|+.+++.++...+.            ..+..+..+++++.++++.|.+
T Consensus       414 ~~------------------------~~~l~~L~~l~l~~~~~~~~------------~~~~~~~~l~~l~~l~ls~n~l  457 (635)
T 4g8a_A          414 SN------------------------FLGLEQLEHLDFQHSNLKQM------------SEFSVFLSLRNLIYLDISHTHT  457 (635)
T ss_dssp             SC------------------------CTTCTTCCEEECTTSEEEST------------TSSCTTTTCTTCCEEECTTSCC
T ss_pred             cc------------------------ccccccccchhhhhcccccc------------cccccccccccccccccccccc
Confidence            33                        44444555555544443311            1112344455555555555555


Q ss_pred             cccccccccCCCcccEEeCCCcccc-CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCc
Q 038858          500 EGEVPVQLCGLNQLQLLDLSDNKLH-GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNN  578 (740)
Q Consensus       500 ~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  578 (740)
                      .+..+..+..+++|+.|++++|.+. +..|..|..        +++|+.|++++|++++..|..|.++++|++|+|++|+
T Consensus       458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccchhhhhhhhhhcccccccCchhhhh--------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence            5555555555556666666655432 233444443        4456666666666665666666666666666666666


Q ss_pred             CCCccchhccCcCCCcEEECCCCcCCccCchhhhcC-CCCCEEEccCCcccc
Q 038858          579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVEL-NALVVFSVAYNNLSG  629 (740)
Q Consensus       579 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~  629 (740)
                      +++..+..|.++++|++|||++|++++..|..+..+ ++|++|++++|++++
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            666666666666666666666666666666666655 456666666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.8e-42  Score=385.40  Aligned_cols=459  Identities=22%  Similarity=0.172  Sum_probs=284.7

Q ss_pred             CCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCC
Q 038858           83 SLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTS  162 (740)
Q Consensus        83 ~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  162 (740)
                      ..++++++++.+  + .+|..+   .++|++|++++|.+.    .+++..|.++++|++|++++|++++..|..|+++++
T Consensus        32 ~~~~l~ls~~~L--~-~ip~~~---~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           32 LESMVDYSNRNL--T-HVPKDL---PPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             -CCEEECTTSCC--C-SCCTTS---CTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             CCcEEEcCCCCC--c-cCCCCC---CCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            335666666632  2 233322   245666666666554    333335566666666666666666555555666666


Q ss_pred             CCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCC
Q 038858          163 LRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIK  242 (740)
Q Consensus       163 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  242 (740)
                      |++|++++|.++ .+|.                                              .  .+++|+.|++++|.
T Consensus       102 L~~L~Ls~N~l~-~lp~----------------------------------------------~--~l~~L~~L~Ls~N~  132 (562)
T 3a79_B          102 LEYLDVSHNRLQ-NISC----------------------------------------------C--PMASLRHLDLSFND  132 (562)
T ss_dssp             CCEEECTTSCCC-EECS----------------------------------------------C--CCTTCSEEECCSSC
T ss_pred             CCEEECCCCcCC-ccCc----------------------------------------------c--ccccCCEEECCCCC
Confidence            666666666554 1111                                              1  34566666666666


Q ss_pred             Cccc-CchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCc--CEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcc
Q 038858          243 MNGE-FPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL--RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG  319 (740)
Q Consensus       243 ~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~  319 (740)
                      +.+. .|..+ +++++|++|++++|.+.+.   .+..+++|  ++|++++|.+..                       ++
T Consensus       133 l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~-----------------------~~  185 (562)
T 3a79_B          133 FDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI-----------------------KG  185 (562)
T ss_dssp             CSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC-----------------------CS
T ss_pred             ccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc-----------------------cc
Confidence            6542 23333 5555666666655555431   22223333  555555554400                       33


Q ss_pred             cCCccccCCC--CCcEEEeecccCCCccChhhhhcCccCcEEEcCCcc-----ccccCCcCCCCCCCCCeEEccCCcccc
Q 038858          320 SIPSSFGNMN--FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN-----LEGHMFSKNFNLTKLSWLLLEDNHFVE  392 (740)
Q Consensus       320 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~~~~  392 (740)
                      ..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.+++++|+     +.+ ....+..+++|+.+++.++.+.+
T Consensus       186 ~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          186 GETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             SSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcH
Confidence            3444443332  11 234444544444444444445555555555542     111 11223445566666665555433


Q ss_pred             cC----ccccccCCCCCeEEccCCcCcccCCCCC-----CCccCcceeeccCCcccCCCCccccC---CCCccEEeccCC
Q 038858          393 EI----PQSLSKCLSLEGLHLNNNNLSGKIPQWL-----GNLTGLQYIIIPENHLEGPIPVAFCQ---LDSLQILGISDN  460 (740)
Q Consensus       393 ~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~n  460 (740)
                      ..    +.. ...++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+ ......+..   ..+|+.|++++|
T Consensus       264 ~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          264 KCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             HHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             HHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCC
Confidence            21    111 123477888888888776666665     5566666666666665 122122222   256888999888


Q ss_pred             cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC--CCcccccccch
Q 038858          461 NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI--PPCFDNTALHE  538 (740)
Q Consensus       461 ~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~  538 (740)
                      .+...              + ....+++|++|++++|.+++..|..+..+++|+.|++++|++++..  |..+..     
T Consensus       342 ~~~~~--------------~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-----  401 (562)
T 3a79_B          342 PFIHM--------------V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-----  401 (562)
T ss_dssp             CCCCC--------------C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-----
T ss_pred             Ccccc--------------c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-----
Confidence            87521              1 1146788999999999998888888899999999999999888643  233444     


Q ss_pred             hhhccccceEEccCccccccCC-cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858          539 RRVLSLLSGIDLSCNKLIGDIP-PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL  617 (740)
Q Consensus       539 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  617 (740)
                         +++|+.|++++|.+++.+| ..+..+++|++|++++|++++..+..+.  ++|++|++++|+++ .+|..+..+++|
T Consensus       402 ---l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L  475 (562)
T 3a79_B          402 ---MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL  475 (562)
T ss_dssp             ---CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred             ---CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence               6789999999999987444 4588899999999999999876666554  79999999999998 677777799999


Q ss_pred             CEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       618 ~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      ++|++++|++++..+..+..+++++.+++++|||.|+|+.
T Consensus       476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            9999999999966555578899999999999999999974

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.8e-42  Score=391.27  Aligned_cols=381  Identities=17%  Similarity=0.181  Sum_probs=315.3

Q ss_pred             CchhhcCCCCCCEEEccCCCCcc-----------------cCchHh-hhcCCCCCEEeccCCcccCCCCCCCCCCCCcCE
Q 038858          223 FPKFLHHQNKLEDVDLSHIKMNG-----------------EFPNWL-LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRL  284 (740)
Q Consensus       223 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  284 (740)
                      +|..++.+++|+.|++++|.+++                 .+|..+ +.++++|++|++++|.+.+..+..+..+++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78888899999999999999987                 377775 238999999999999998888888999999999


Q ss_pred             EeccCCc-Ccc-cCChhHhh------cCCCCcEEEccCCcCcccCCc--cccCCCCCcEEEeecccCCCccChhhhhcCc
Q 038858          285 LDVSNNN-FQG-RIPAEIGD------ILPSLSSFNISMNALDGSIPS--SFGNMNFLQILDLSNNHLTGEIPEHLAIGCV  354 (740)
Q Consensus       285 L~l~~n~-l~~-~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  354 (740)
                      |++++|+ +++ .+|..+..      .+++|++|++++|.++ .+|.  .+.++++|+.|++++|.++ .+|  .+..++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~  595 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV  595 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence            9999998 887 78877654      2459999999999999 7888  8999999999999999998 888  445799


Q ss_pred             cCcEEEcCCccccccCCcCCCCCCC-CCeEEccCCcccccCccccccCCC--CCeEEccCCcCcccCCCCC---C--Ccc
Q 038858          355 NLEILVLSNNNLEGHMFSKNFNLTK-LSWLLLEDNHFVEEIPQSLSKCLS--LEGLHLNNNNLSGKIPQWL---G--NLT  426 (740)
Q Consensus       355 ~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~l---~--~l~  426 (740)
                      +|+.|++++|.+. ..+..+..+++ |+.|++++|++. .+|..+..++.  |+.|++++|.+.+.+|...   .  .++
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            9999999999998 56667888888 999999999988 66776766544  9999999999987655322   2  345


Q ss_pred             CcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccccc
Q 038858          427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQ  506 (740)
Q Consensus       427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  506 (740)
                      +|+.|++++|.++...+..+..+++|+.|++++|++. .+|.....     ..+..+.++++|+.|++++|.++ .+|..
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~-----~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~  746 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK-----PKDGNYKNTYLLTTIDLRFNKLT-SLSDD  746 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS-----CTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc-----cccccccccCCccEEECCCCCCc-cchHH
Confidence            8999999999999555555668999999999999987 34332110     01112345669999999999999 67777


Q ss_pred             cc--CCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccC------ccccccCCcCccCCCcCcEEeCcCCc
Q 038858          507 LC--GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSC------NKLIGDIPPQIGNLTRIQTLNLSHNN  578 (740)
Q Consensus       507 l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~L~~n~  578 (740)
                      +.  .+++|+.|+|++|++++ +|..+..        +++|+.|++++      |.+.+.+|..+..+++|+.|+|++|+
T Consensus       747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~--------L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYNCFSS-FPTQPLN--------SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             GSTTTCTTCCEEECCSSCCSS-CCCGGGG--------CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             hhhccCCCcCEEEeCCCCCCc-cchhhhc--------CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence            76  89999999999999997 5666655        68999999976      88888999999999999999999999


Q ss_pred             CCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858          579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS  628 (740)
Q Consensus       579 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  628 (740)
                      + +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus       818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             C-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            9 57777765  69999999999999877777777666777788888765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-39  Score=355.01  Aligned_cols=372  Identities=22%  Similarity=0.233  Sum_probs=311.4

Q ss_pred             CEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcc-cCCccccCCCCCcEEEee
Q 038858          259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG-SIPSSFGNMNFLQILDLS  337 (740)
Q Consensus       259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~  337 (740)
                      +.++.+++.++....    -.++|++|++++|.+++..|..+.. +++|++|++++|.+.+ ..+..|.++++|++|+++
T Consensus        13 ~~~~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCSSCCC----CCTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcccCCC----CCCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            456667777665433    2378999999999998555555554 8999999999999874 446789999999999999


Q ss_pred             cccCCCccChhhhhcCccCcEEEcCCccccccCCc--CCCCCCCCCeEEccCCcccccCccc-cccCCCCCeEEccCCcC
Q 038858          338 NNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFS--KNFNLTKLSWLLLEDNHFVEEIPQS-LSKCLSLEGLHLNNNNL  414 (740)
Q Consensus       338 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~i  414 (740)
                      +|.+++..|.. +.++++|++|++++|.+.+..+.  .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus        88 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            99998444544 45899999999999999874433  4888999999999999998887765 78999999999999999


Q ss_pred             cccCCCCCCCc--cCcceeeccCCcccCCCCcc--------ccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhh
Q 038858          415 SGKIPQWLGNL--TGLQYIIIPENHLEGPIPVA--------FCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRID  484 (740)
Q Consensus       415 ~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~  484 (740)
                      .+..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|++.+             ..|..+.
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------------~~~~~~~  233 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-------------SMAKRFF  233 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-------------HHHHHHH
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-------------cchhhhh
Confidence            98888877766  78999999999988665443        2356899999999998873             4445554


Q ss_pred             cc---ccCcEEEcccccccccc----------ccccc--CCCcccEEeCCCccccCCCCCcccccccchhhhccccceEE
Q 038858          485 GL---LRLSHLILAHNNLEGEV----------PVQLC--GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGID  549 (740)
Q Consensus       485 ~l---~~L~~L~L~~n~l~~~~----------~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~  549 (740)
                      ..   ++|+.|++++|...+..          +..+.  ..++|+.|++++|.+.+..|..+..        +++|+.|+
T Consensus       234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~  305 (455)
T 3v47_A          234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH--------FTDLEQLT  305 (455)
T ss_dssp             HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT--------CTTCCEEE
T ss_pred             ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc--------CCCCCEEE
Confidence            43   88999999998654321          11222  2368999999999999888888877        67999999


Q ss_pred             ccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858          550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       550 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  629 (740)
                      +++|.+.+..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus       306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence            99999999889999999999999999999999889999999999999999999998889999999999999999999999


Q ss_pred             cCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          630 KIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       630 ~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      ..+..+..+++|+.+++++||+.|+|+.
T Consensus       386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          386 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCHhHhccCCcccEEEccCCCcccCCCc
Confidence            8888888999999999999999999983

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=364.02  Aligned_cols=458  Identities=18%  Similarity=0.174  Sum_probs=244.4

Q ss_pred             CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858           58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV  137 (740)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~  137 (740)
                      ..++++++++.++ .+|.. +.  ++|++|++++|.  +.+..+..+.. +++|++|++++|.++    .++++.|.+++
T Consensus        32 ~~~~l~ls~~~L~-~ip~~-~~--~~L~~L~Ls~N~--i~~~~~~~~~~-l~~L~~L~Ls~N~l~----~~~~~~~~~l~  100 (562)
T 3a79_B           32 LESMVDYSNRNLT-HVPKD-LP--PRTKALSLSQNS--ISELRMPDISF-LSELRVLRLSHNRIR----SLDFHVFLFNQ  100 (562)
T ss_dssp             -CCEEECTTSCCC-SCCTT-SC--TTCCEEECCSSC--CCCCCGGGTTT-CTTCCEEECCSCCCC----EECTTTTTTCT
T ss_pred             CCcEEEcCCCCCc-cCCCC-CC--CCcCEEECCCCC--ccccChhhhcc-CCCccEEECCCCCCC----cCCHHHhCCCC
Confidence            3456666666665 34432 22  566666666663  23333334444 666666666666655    33333566666


Q ss_pred             CCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCC
Q 038858          138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGY  217 (740)
Q Consensus       138 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  217 (740)
                      +|++|++++|+++ .+|..  .+++|++|++++|.+.+.                                         
T Consensus       101 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l-----------------------------------------  136 (562)
T 3a79_B          101 DLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL-----------------------------------------  136 (562)
T ss_dssp             TCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBC-----------------------------------------
T ss_pred             CCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcccc-----------------------------------------
Confidence            6666666666666 34433  566666666666665421                                         


Q ss_pred             CCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCC--CEEeccCCcc--cCCCCCCCCCCC-CcCEEeccCCcC
Q 038858          218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL--ESLSLVNDSL--AGPFRLPIHSHK-SLRLLDVSNNNF  292 (740)
Q Consensus       218 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l  292 (740)
                          ..|..++.+++|+.|++++|.+.+..    +..+++|  ++|++++|.+  .+..+..+..+. ..-.+++++|.+
T Consensus       137 ----~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~  208 (562)
T 3a79_B          137 ----PVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL  208 (562)
T ss_dssp             ----CCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred             ----CchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence                11223444555566666655554321    1233444  6666666655  444443333322 111456666766


Q ss_pred             cccCChhHhhcCCCCcEEEccCCcCc----ccCCccccCCCCCcEEEeecccCCCccChhhh--hcCccCcEEEcCCccc
Q 038858          293 QGRIPAEIGDILPSLSSFNISMNALD----GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA--IGCVNLEILVLSNNNL  366 (740)
Q Consensus       293 ~~~~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l  366 (740)
                      .+.++...+..+++|+.+++++|...    ......+.+++.|+.++++++.+.+.......  ...++|++|++++|.+
T Consensus       209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  288 (562)
T 3a79_B          209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI  288 (562)
T ss_dssp             CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred             hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence            65555555555667777777776421    11223466777777777777766532111111  1234777888888777


Q ss_pred             cccCCcCC-----CCCCCCCeEEccCCcccccCc-cccc---cCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCc
Q 038858          367 EGHMFSKN-----FNLTKLSWLLLEDNHFVEEIP-QSLS---KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENH  437 (740)
Q Consensus       367 ~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  437 (740)
                      .+..+..+     ..++.|+.+++..+.+  ..| ..+.   ...+|++|++++|.+....  ....+++|++|++++|.
T Consensus       289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~  364 (562)
T 3a79_B          289 TERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV  364 (562)
T ss_dssp             CSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred             eccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence            75555544     3444444455555544  222 1111   2256777888777764221  12456777777777777


Q ss_pred             ccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccc-cccccccCCCcccEE
Q 038858          438 LEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG-EVPVQLCGLNQLQLL  516 (740)
Q Consensus       438 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L  516 (740)
                      +++..+..+..+++|++|++++|++++..           ..|..+..+++|++|++++|.+++ ..+..+..+++|+.|
T Consensus       365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L  433 (562)
T 3a79_B          365 FTDSVFQGCSTLKRLQTLILQRNGLKNFF-----------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL  433 (562)
T ss_dssp             CCTTTTTTCCSCSSCCEEECCSSCCCBTT-----------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred             cccchhhhhcccCCCCEEECCCCCcCCcc-----------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence            77666666777777777777777665210           123345556666666666666655 222335555556666


Q ss_pred             eCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEE
Q 038858          517 DLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESL  596 (740)
Q Consensus       517 ~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  596 (740)
                      ++++|++++..|..                                +.  ++|++|+|++|+++ .+|..+..+++|++|
T Consensus       434 ~l~~n~l~~~~~~~--------------------------------l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L  478 (562)
T 3a79_B          434 NLSSNMLTGSVFRC--------------------------------LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL  478 (562)
T ss_dssp             ECCSSCCCGGGGSS--------------------------------CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred             ECCCCCCCcchhhh--------------------------------hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence            66655554433322                                22  34555555555555 233333355555555


Q ss_pred             ECCCCcCCccCchh-hhcCCCCCEEEccCCcccc
Q 038858          597 DLYHNKLNGKIPCQ-LVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       597 ~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~  629 (740)
                      ++++|+++ .+|.. +..+++|+.|++++|++.+
T Consensus       479 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             ECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             ECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence            55555555 23332 5555555555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.4e-39  Score=348.36  Aligned_cols=383  Identities=19%  Similarity=0.197  Sum_probs=297.4

Q ss_pred             EEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccC
Q 038858          235 DVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISM  314 (740)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  314 (740)
                      .++.+++.++ .+|. +   .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555555554 4443 1   256777777777777766667777777788888777776566555555577888888888


Q ss_pred             CcCcccCCccccCCCCCcEEEeecccCCCccCh-hhhhcCccCcEEEcCCccccccCCcC-CCCCCCCCeEEccCCcccc
Q 038858          315 NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE-HLAIGCVNLEILVLSNNNLEGHMFSK-NFNLTKLSWLLLEDNHFVE  392 (740)
Q Consensus       315 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~  392 (740)
                      |.+++..|..|.++++|++|++++|.+++.++. ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            887777777788888888888888877643332 23446778888888888877765554 6677888888888888877


Q ss_pred             cCccccccC--CCCCeEEccCCcCcccCCCC--------CCCccCcceeeccCCcccCCCCccccCC---CCccEEeccC
Q 038858          393 EIPQSLSKC--LSLEGLHLNNNNLSGKIPQW--------LGNLTGLQYIIIPENHLEGPIPVAFCQL---DSLQILGISD  459 (740)
Q Consensus       393 ~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~  459 (740)
                      ..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+.+..+..+...   .+|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            766666654  67888888888877544433        2356789999999998887766665443   7899999999


Q ss_pred             CcCCCCCCCCCCCCcCCccCchhhhcc--ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858          460 NNISGSLPSYLSYNRLNGSIPDRIDGL--LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH  537 (740)
Q Consensus       460 n~l~~~~~~~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  537 (740)
                      |...+..   +..+.+.+..+..+..+  ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..|..|..    
T Consensus       249 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----  321 (455)
T 3v47_A          249 SYNMGSS---FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----  321 (455)
T ss_dssp             CTTTSCC---TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT----
T ss_pred             ccccccc---cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC----
Confidence            8776432   22233333333344443  68999999999999999999999999999999999999888888876    


Q ss_pred             hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858          538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL  617 (740)
Q Consensus       538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  617 (740)
                          +++|+.|++++|.+.+..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|
T Consensus       322 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          322 ----LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             ----CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ----cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence                6799999999999998888999999999999999999999889999999999999999999998777778999999


Q ss_pred             CEEEccCCcccccCCC
Q 038858          618 VVFSVAYNNLSGKIPE  633 (740)
Q Consensus       618 ~~L~l~~N~l~~~~~~  633 (740)
                      ++|++++|++++..|.
T Consensus       398 ~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          398 QKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCBCCCTTT
T ss_pred             cEEEccCCCcccCCCc
Confidence            9999999999988875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-37  Score=334.41  Aligned_cols=283  Identities=29%  Similarity=0.380  Sum_probs=110.2

Q ss_pred             CCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEc
Q 038858          306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLL  385 (740)
Q Consensus       306 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  385 (740)
                      +|++|++++|.+++ +| .|.++++|++|++++|+++ .+|..    .++|++|++++|.+.+..  .+..+++|++|++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l  202 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYA  202 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEEC
Confidence            44455555544443 33 2444455555555555444 23321    234555555555444421  3444555555555


Q ss_pred             cCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCC
Q 038858          386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS  465 (740)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  465 (740)
                      ++|++.+. |..   .++|++|++++|.+. .+| .+..+++|++|++++|++++. |.   .+++|+.|++++|++.+ 
T Consensus       203 ~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-  271 (454)
T 1jl5_A          203 DNNSLKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-  271 (454)
T ss_dssp             CSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-
T ss_pred             CCCcCCcC-CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-
Confidence            55544431 111   134555555555544 333 244455555555555554432 21   12445555555555441 


Q ss_pred             CCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcccc
Q 038858          466 LPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL  545 (740)
Q Consensus       466 ~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L  545 (740)
                                   +|..   .++|++|++++|.+++...    ..++|+.|++++|++++...  +          .++|
T Consensus       272 -------------l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~~--~----------~~~L  319 (454)
T 1jl5_A          272 -------------LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCD--L----------PPSL  319 (454)
T ss_dssp             -------------CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECC--C----------CTTC
T ss_pred             -------------cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcccC--C----------cCcC
Confidence                         1111   1345555555555543110    01345555555555443110  0          1245


Q ss_pred             ceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCc--cCchhhhcC---------
Q 038858          546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG--KIPCQLVEL---------  614 (740)
Q Consensus       546 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l---------  614 (740)
                      +.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|..+..+         
T Consensus       320 ~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i  391 (454)
T 1jl5_A          320 EELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV  391 (454)
T ss_dssp             CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred             CEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence            555555555553 3322   3455555555555553 222   24555555555555554  444444444         


Q ss_pred             ----CCCCEEEccCCcccc--cCCCCCccccCCCccccCCCCCCCC
Q 038858          615 ----NALVVFSVAYNNLSG--KIPEMTTQFATFNESNYKGNPFLCG  654 (740)
Q Consensus       615 ----~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~Np~~C~  654 (740)
                          ++|++|++++|++++  .+|.      ++..+.+.+|.+.|.
T Consensus       392 ~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          392 PELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP  431 (454)
T ss_dssp             ----------------------------------------------
T ss_pred             ccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence                789999999999987  4443      355666777766654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=330.27  Aligned_cols=321  Identities=19%  Similarity=0.191  Sum_probs=211.7

Q ss_pred             CEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcC
Q 038858          283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS  362 (740)
Q Consensus       283 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  362 (740)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECC
Confidence            56788887777 677654   357888888888888777788888888888888888887 4433344477888888888


Q ss_pred             CccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCC
Q 038858          363 NNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPI  442 (740)
Q Consensus       363 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  442 (740)
                      +|.+.......|.++++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            88877766666777777777777777777776777777777777777777777666667777777777777777776655


Q ss_pred             CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcc
Q 038858          443 PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNK  522 (740)
Q Consensus       443 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  522 (740)
                      +..+..+++|+.|++++|.+.+             ..+..|..+++|+.|++++|...+..+.......+|+.|++++|.
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~-------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINA-------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCE-------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             hhHhcccCCCcEEeCCCCcCcE-------------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence            5566667777777777666652             223345556666666666665554554444444566666666666


Q ss_pred             ccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858          523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK  602 (740)
Q Consensus       523 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  602 (740)
                      +++..+..+..        +++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+
T Consensus       236 l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          236 LTAVPYLAVRH--------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             CCSCCHHHHTT--------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             ccccCHHHhcC--------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            65433333333        4456666666666655555555566666666666666665555566666666666666666


Q ss_pred             CCccCchhhhcCCCCCEEEccCCcccc
Q 038858          603 LNGKIPCQLVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       603 l~~~~~~~~~~l~~L~~L~l~~N~l~~  629 (740)
                      +++..+..|..+++|++|++++|++.+
T Consensus       308 l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          308 LTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CceeCHhHcCCCcccCEEEccCCCccC
Confidence            655555555555566666666665553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-36  Score=327.47  Aligned_cols=321  Identities=24%  Similarity=0.338  Sum_probs=187.8

Q ss_pred             CCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEE
Q 038858          231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSF  310 (740)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  310 (740)
                      ++|+.|++++|.+++ ++.    ..++|++|++++|.+++ .+ .+..+++|++|++++|.++ .+|..    .++|++|
T Consensus       111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence            577788888887764 322    12688888888888887 33 5888899999999999888 46643    4589999


Q ss_pred             EccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcc
Q 038858          311 NISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF  390 (740)
Q Consensus       311 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  390 (740)
                      ++++|.+++ +| .+.++++|++|++++|.++ .+|..    .++|++|++++|.+....  .+..+++|++|++++|++
T Consensus       179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC
T ss_pred             ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcC
Confidence            999998885 55 5888899999999999887 45542    357888888888887433  377788888888888887


Q ss_pred             cccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCC
Q 038858          391 VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL  470 (740)
Q Consensus       391 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  470 (740)
                      .+. |.   ..++|++|++++|.+.+ +|..   .++|+.|++++|.+++...    ..++|+.|++++|++++      
T Consensus       250 ~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~------  311 (454)
T 1jl5_A          250 KTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS------  311 (454)
T ss_dssp             SSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE------
T ss_pred             Ccc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc------
Confidence            653 32   23678888888888774 4432   3678888888887775211    12577788888777762      


Q ss_pred             CCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEc
Q 038858          471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDL  550 (740)
Q Consensus       471 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  550 (740)
                              ++.   -.++|++|++++|.+++ +|..   +++|++|++++|.+++. |. .          +++|+.|++
T Consensus       312 --------i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~-~----------l~~L~~L~L  364 (454)
T 1jl5_A          312 --------LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE-L----------PQNLKQLHV  364 (454)
T ss_dssp             --------ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC-C----------CTTCCEEEC
T ss_pred             --------ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc-h----------hhhccEEEC
Confidence                    111   01467778888777774 3332   46777777777777643 32 1          357777777


Q ss_pred             cCccccc--cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCc--cCchhhhcCCCCCEEEccCCc
Q 038858          551 SCNKLIG--DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG--KIPCQLVELNALVVFSVAYNN  626 (740)
Q Consensus       551 ~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~  626 (740)
                      ++|++++  .+|..+..        ++.|.+.+.+|..   +++|+.|++++|++++  .+|.      +++.|.+.+|.
T Consensus       365 ~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~  427 (454)
T 1jl5_A          365 EYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER  427 (454)
T ss_dssp             CSSCCSSCCCCCTTCCE--------EECCC--------------------------------------------------
T ss_pred             CCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence            7777776  44443332        2235555544442   4889999999999986  4553      46777889998


Q ss_pred             ccccCCCC
Q 038858          627 LSGKIPEM  634 (740)
Q Consensus       627 l~~~~~~~  634 (740)
                      +.+..|..
T Consensus       428 ~~~~~~~~  435 (454)
T 1jl5_A          428 VVDPYEFA  435 (454)
T ss_dssp             --------
T ss_pred             cCCccccC
Confidence            88766654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-36  Score=329.79  Aligned_cols=323  Identities=25%  Similarity=0.249  Sum_probs=255.3

Q ss_pred             CEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeec
Q 038858          259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSN  338 (740)
Q Consensus       259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  338 (740)
                      +.++.+++.++.+.. .+  .+++++|++++|.+++..+.. +..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            456666666664332 22  367888888888888433444 44488888888888888887788888888888888888


Q ss_pred             ccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccC
Q 038858          339 NHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI  418 (740)
Q Consensus       339 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  418 (740)
                      |.++ .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus        90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            8887 677666667888888888888888877778888888888888888888877778888888888888888887665


Q ss_pred             CCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc
Q 038858          419 PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN  498 (740)
Q Consensus       419 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  498 (740)
                      +..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|             .......+|++|++++|.
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-------------PNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-------------TTTTTTCCCSEEEEESSC
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-------------cccccCccccEEECcCCc
Confidence            5667788888888888888887777788888888888888887654332             223334588888888888


Q ss_pred             ccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCc
Q 038858          499 LEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNN  578 (740)
Q Consensus       499 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  578 (740)
                      +++..+..+..+++|+.|++++|.+.+..+..|..        +++|+.|++++|++.+..|..|..+++|+.|+|++|+
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT--------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccc--------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            88666677888888888888888888777766665        5688888888888888888888888888888888888


Q ss_pred             CCCccchhccCcCCCcEEECCCCcCCccC
Q 038858          579 LTGTILSTFTNLRHIESLDLYHNKLNGKI  607 (740)
Q Consensus       579 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  607 (740)
                      +++..+..|..+++|++|++++|++....
T Consensus       308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          308 LTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             CSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             CceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            88877788888888888888888887443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-34  Score=312.16  Aligned_cols=346  Identities=25%  Similarity=0.382  Sum_probs=267.0

Q ss_pred             CCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcE
Q 038858          230 QNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSS  309 (740)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  309 (740)
                      +++++.|+++++.+. .+|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCE
Confidence            457888888888776 3454  3678888888888888876544  7788888888888888873 443  334788888


Q ss_pred             EEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCc
Q 038858          310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNH  389 (740)
Q Consensus       310 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  389 (740)
                      |++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|++|+++ +.+.+..  .+..+++|++|++++|.
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            8888888875433  788888888888888887 4443  3468888888886 4444332  36778888888888888


Q ss_pred             ccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCC
Q 038858          390 FVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY  469 (740)
Q Consensus       390 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  469 (740)
                      +...  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+     
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-----  257 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-----  257 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-----
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-----
Confidence            7654  347788889999999888875544  66788889999988888754  457788889999999888762     


Q ss_pred             CCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEE
Q 038858          470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGID  549 (740)
Q Consensus       470 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~  549 (740)
                               .+. +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..+  +..        +++|+.|+
T Consensus       258 ---------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--------l~~L~~L~  315 (466)
T 1o6v_A          258 ---------LAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN--------LKNLTYLT  315 (466)
T ss_dssp             ---------CGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG--------CTTCSEEE
T ss_pred             ---------chh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC--------CCCCCEEE
Confidence                     222 6778889999999998886544  7788889999999998876543  333        67889999


Q ss_pred             ccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858          550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       550 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  629 (740)
                      +++|.+++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99998886654  67888999999999988874  578888999999999999987766  7888899999999998887


Q ss_pred             c
Q 038858          630 K  630 (740)
Q Consensus       630 ~  630 (740)
                      .
T Consensus       390 ~  390 (466)
T 1o6v_A          390 A  390 (466)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-34  Score=315.01  Aligned_cols=347  Identities=25%  Similarity=0.350  Sum_probs=296.8

Q ss_pred             hcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCc
Q 038858          253 ENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ  332 (740)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~  332 (740)
                      ..++++++|++.++.+....  .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+  +.++++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  115 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT  115 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence            34678999999999987643  4778999999999999998 4554  4458999999999999986544  99999999


Q ss_pred             EEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCC
Q 038858          333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN  412 (740)
Q Consensus       333 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  412 (740)
                      +|++++|.++ .++.  +..+++|++|++++|.+.+..  .+..+++|+.|+++ +.+....  .+..+++|++|++++|
T Consensus       116 ~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            9999999998 5554  458999999999999988753  47889999999997 4444332  3889999999999999


Q ss_pred             cCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEE
Q 038858          413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHL  492 (740)
Q Consensus       413 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L  492 (740)
                      .+.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.              .+ ..+..+++|+.|
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~--------------~~-~~l~~l~~L~~L  248 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--------------DI-GTLASLTNLTDL  248 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--------------CC-GGGGGCTTCSEE
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc--------------cc-hhhhcCCCCCEE
Confidence            98753  347889999999999999987655  778999999999999986              22 357889999999


Q ss_pred             EcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEE
Q 038858          493 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTL  572 (740)
Q Consensus       493 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  572 (740)
                      ++++|.+++..+  +..+++|+.|++++|.+.+..+  +..        +++|+.|++++|++.+..+  +..+++|+.|
T Consensus       249 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~--------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG--------LTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT--------CTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             ECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC--------CCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            999999986655  8899999999999999986544  433        6799999999999996544  8899999999


Q ss_pred             eCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCC
Q 038858          573 NLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFL  652 (740)
Q Consensus       573 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~  652 (740)
                      ++++|++++..+  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++++.+++++|+|.
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            999999998665  78999999999999999865  468899999999999999999887  688999999999999988


Q ss_pred             C
Q 038858          653 C  653 (740)
Q Consensus       653 C  653 (740)
                      .
T Consensus       389 ~  389 (466)
T 1o6v_A          389 N  389 (466)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-34  Score=306.02  Aligned_cols=334  Identities=21%  Similarity=0.251  Sum_probs=200.6

Q ss_pred             CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858          279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI  358 (740)
Q Consensus       279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  358 (740)
                      +++++.|+++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            467788888888776 677776666888888888888888777777888888888888888887 454444456777888


Q ss_pred             EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858          359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL  438 (740)
Q Consensus       359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  438 (740)
                      |++++|.+.......+..+++|++|++++|++.+..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88887777766555566777777777777777766666677777777777777776643   244556667777766665


Q ss_pred             cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858          439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL  518 (740)
Q Consensus       439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  518 (740)
                      ++     +...++|++|++++|.+..              +|..  ..++|+.|++++|.+++.  ..+..+++|++|++
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~--------------~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  255 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINV--------------VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL  255 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCE--------------EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             cc-----cCCCCcceEEECCCCeeee--------------cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence            52     2234466666666666541              1111  124566666666655532  34555555555555


Q ss_pred             CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC
Q 038858          519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL  598 (740)
Q Consensus       519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  598 (740)
                      ++|.+.+..|..+..        +++|+.|++++|++++ +|..+..+++|++|+|++|++++ +|..+..+++|++|++
T Consensus       256 s~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          256 SYNELEKIMYHPFVK--------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL  325 (390)
T ss_dssp             CSSCCCEEESGGGTT--------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred             CCCcCCCcChhHccc--------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEEC
Confidence            555555444444433        3455555555555543 23334445555555555555552 3344455555555555


Q ss_pred             CCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCC
Q 038858          599 YHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGL  655 (740)
Q Consensus       599 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~  655 (740)
                      ++|+++.. +  +..+++|+.|++++|++.+....  ..+..+....+.+++..|.+
T Consensus       326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred             CCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceecc
Confidence            55555532 2  34455555555555555542111  12233344445555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.3e-34  Score=302.78  Aligned_cols=315  Identities=19%  Similarity=0.173  Sum_probs=273.2

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL  383 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (740)
                      +++++.|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            679999999999999766666899999999999999998 6666556689999999999999999888889999999999


Q ss_pred             EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858          384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      ++++|++....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            9999999877666678999999999999999988888899999999999999999865   3566889999999999886


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS  543 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~  543 (740)
                      +                  +...++|++|++++|.+..... .  ..++|+.|++++|.+++.  ..+..        ++
T Consensus       200 ~------------------~~~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~--~~l~~--------l~  248 (390)
T 3o6n_A          200 T------------------LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT--AWLLN--------YP  248 (390)
T ss_dssp             E------------------EECCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC--GGGGG--------CT
T ss_pred             c------------------cCCCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc--HHHcC--------CC
Confidence            2                  1234689999999999985533 2  357999999999999864  23333        68


Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  623 (740)
                      +|++|++++|.+.+..|..|..+++|++|+|++|++++ .+..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  326 (390)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence            99999999999998889999999999999999999996 4666788999999999999998 667778999999999999


Q ss_pred             CCcccccCCCCCccccCCCccccCCCCCCCCCCCC
Q 038858          624 YNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP  658 (740)
Q Consensus       624 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~  658 (740)
                      +|+++...   +..+++++.+++++|||.|+|...
T Consensus       327 ~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~  358 (390)
T 3o6n_A          327 HNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA  358 (390)
T ss_dssp             SSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred             CCccceeC---chhhccCCEEEcCCCCccchhHHH
Confidence            99998763   467889999999999999987543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.3e-34  Score=307.53  Aligned_cols=352  Identities=17%  Similarity=0.138  Sum_probs=224.1

Q ss_pred             hhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcC
Q 038858          225 KFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDIL  304 (740)
Q Consensus       225 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  304 (740)
                      ..++.+++|+.|++++|.+++. | . ++.+++|++|++++|.+++.   .+..+++|++|++++|.+++ ++  + ..+
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~-~~l  105 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V-TPL  105 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C-TTC
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c-CCC
Confidence            3455667777777777777643 4 2 36677777777777777664   26667777777777777763 33  2 236


Q ss_pred             CCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEE
Q 038858          305 PSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL  384 (740)
Q Consensus       305 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  384 (740)
                      ++|++|++++|.+++. +  +..+++|++|++++|++++ ++   +..+++|++|++++|...+..  .+..+++|++|+
T Consensus       106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            7777777777777653 3  6677777777777777763 33   235677777777777433322  355677777777


Q ss_pred             ccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCC
Q 038858          385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG  464 (740)
Q Consensus       385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  464 (740)
                      +++|++.+. +  +..+++|++|++++|.+++.   .+..+++|+.|++++|++++. |  +..+++|+.|++++|++++
T Consensus       177 ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          177 CSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence            777777653 2  56677777777777777643   266677777777777777753 3  6667777777777777663


Q ss_pred             CCCCCCCCCcCCccCchhhhcc-------ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858          465 SLPSYLSYNRLNGSIPDRIDGL-------LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH  537 (740)
Q Consensus       465 ~~~~~l~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  537 (740)
                      ..+             ..+.++       .+|+.|++++|.+.+..|  ++.+++|+.|++++|...+.+|........-
T Consensus       248 ~~~-------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L  312 (457)
T 3bz5_A          248 LDV-------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL  312 (457)
T ss_dssp             CCC-------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred             cCH-------------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe
Confidence            211             111111       134445555555444444  4566777777777777655554332222222


Q ss_pred             hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858          538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL  617 (740)
Q Consensus       538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  617 (740)
                      .+..+++|+.|++++|++++. +  +..+++|+.|++++|++++        ++.|+.|++++|.+.+.     ..+..|
T Consensus       313 ~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l  376 (457)
T 3bz5_A          313 DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM  376 (457)
T ss_dssp             CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred             chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence            233456777888888887763 2  6777788888888887775        24556667777777654     244567


Q ss_pred             CEEEccCCcccccCCCCC
Q 038858          618 VVFSVAYNNLSGKIPEMT  635 (740)
Q Consensus       618 ~~L~l~~N~l~~~~~~~~  635 (740)
                      ..+++++|+++|.+|..+
T Consensus       377 ~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          377 PKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CCBCCBTTBEEEECCTTC
T ss_pred             CccccccCcEEEEcChhH
Confidence            788999999999888643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.5e-33  Score=313.31  Aligned_cols=335  Identities=21%  Similarity=0.258  Sum_probs=245.7

Q ss_pred             CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858          279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI  358 (740)
Q Consensus       279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  358 (740)
                      +++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            467888888888877 677777777888999999999888877778888889999999988888 455555557888888


Q ss_pred             EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858          359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL  438 (740)
Q Consensus       359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  438 (740)
                      |++++|.+.+.++..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            88888888877766677888888888888888877777788888888888888887753   245567788888888877


Q ss_pred             cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858          439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL  518 (740)
Q Consensus       439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  518 (740)
                      .+     +...++|+.|++++|.+..              ++..+  .++|+.|++++|.+++  +..+..+++|+.|++
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~--------------~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~L  261 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINV--------------VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDL  261 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCE--------------EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEEC
T ss_pred             cc-----ccCCchhheeeccCCcccc--------------ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEEC
Confidence            63     3345678888888887762              11111  2567888888887764  356777777888888


Q ss_pred             CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC
Q 038858          519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL  598 (740)
Q Consensus       519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  598 (740)
                      ++|.+.+..|..|..        +++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|
T Consensus       262 s~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          262 SYNELEKIMYHPFVK--------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  331 (597)
T ss_dssp             CSSCCCEEESGGGTT--------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             CCCccCCCCHHHhcC--------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence            888777776666655        5677777777777775 3555666778888888888777 45666777788888888


Q ss_pred             CCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          599 YHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       599 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      ++|++++. |  +..+++|+.|++++|++++..+.  ..+..+....+.+++..|+.+
T Consensus       332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            88887744 2  45667788888888887764322  224445555667777777653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.5e-32  Score=285.78  Aligned_cols=304  Identities=25%  Similarity=0.361  Sum_probs=171.2

Q ss_pred             CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858          279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI  358 (740)
Q Consensus       279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  358 (740)
                      +++|++|+++++.+. .++. + ..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++|++
T Consensus        43 l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred             cccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence            344444444444443 2322 1 224555555555555543222  455555555555555554 2321  234555555


Q ss_pred             EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858          359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL  438 (740)
Q Consensus       359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  438 (740)
                      |++++|.+.+...  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            5555555544322  4455566666666664443333 25566666666666666653322  55566666666666666


Q ss_pred             cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858          439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL  518 (740)
Q Consensus       439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  518 (740)
                      .+..+  +..+++|+.+++++|.+.              ..+. +..+++|++|++++|.+++..+  +..+++|++|++
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~--------------~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  250 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQIT--------------DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI  250 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCC--------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccc--ccCCCccceeecccCCCC--------------CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence            54322  556666777777666665              1222 5566667777777776664433  666677777777


Q ss_pred             CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC
Q 038858          519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL  598 (740)
Q Consensus       519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  598 (740)
                      ++|.+++.  ..+..        +++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+..|..+++|++|++
T Consensus       251 ~~n~l~~~--~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          251 GTNQISDI--NAVKD--------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             CSSCCCCC--GGGTT--------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred             CCCccCCC--hhHhc--------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence            77766543  12222        45666666666666643  34666677777777777777666677777777777777


Q ss_pred             CCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858          599 YHNKLNGKIPCQLVELNALVVFSVAYNNLS  628 (740)
Q Consensus       599 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  628 (740)
                      ++|++++..|  +..+++|++|++++|+++
T Consensus       319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          319 SQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCccccccC--hhhhhccceeehhhhccc
Confidence            7777765544  566777777777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-33  Score=289.97  Aligned_cols=259  Identities=33%  Similarity=0.545  Sum_probs=225.9

Q ss_pred             CCCCeEEccCCcccc--cCccccccCCCCCeEEccC-CcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccE
Q 038858          378 TKLSWLLLEDNHFVE--EIPQSLSKCLSLEGLHLNN-NNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI  454 (740)
Q Consensus       378 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  454 (740)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467778888888777  6777888888888888884 7777778888888888888888888888778888888888888


Q ss_pred             EeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCC-cccEEeCCCccccCCCCCcccc
Q 038858          455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN-QLQLLDLSDNKLHGLIPPCFDN  533 (740)
Q Consensus       455 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~  533 (740)
                      |++++|.+.+             .+|..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+..
T Consensus       130 L~Ls~N~l~~-------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          130 LDFSYNALSG-------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             EECCSSEEES-------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             EeCCCCccCC-------------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence            8888887763             5566788888999999999999888888888887 8999999999998888877766


Q ss_pred             cccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc
Q 038858          534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE  613 (740)
Q Consensus       534 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  613 (740)
                              +. |+.|++++|.+.+..|..|..+++|+.|+|++|.+++..+. +..+++|++|++++|++++.+|..+..
T Consensus       197 --------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          197 --------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             --------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             --------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhc
Confidence                    34 99999999999988899999999999999999999976665 888999999999999999999999999


Q ss_pred             CCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCCCCC
Q 038858          614 LNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC  660 (740)
Q Consensus       614 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c  660 (740)
                      +++|++|++++|++++.+|.. ..+++|+.+++.+||+.|+.|...|
T Consensus       267 l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCC
Confidence            999999999999999999996 8899999999999999999876666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.9e-33  Score=312.91  Aligned_cols=313  Identities=19%  Similarity=0.172  Sum_probs=274.1

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL  383 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (740)
                      +++++.+++++|.+....+..|.++++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..++.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            578999999999999777777899999999999999998 5555555689999999999999999888889999999999


Q ss_pred             EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858          384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      ++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            99999999777777899999999999999999888889999999999999999998653   556789999999999886


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS  543 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~  543 (740)
                      +                  +...++|+.|++++|.+....+..   .++|+.|++++|.+++.  ..+..        ++
T Consensus       206 ~------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~--------l~  254 (597)
T 3oja_B          206 T------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN--------YP  254 (597)
T ss_dssp             E------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG--------CT
T ss_pred             c------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc--------CC
Confidence            2                  223468999999999998554332   36899999999999863  33433        78


Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  623 (740)
                      +|+.|++++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence            99999999999999999999999999999999999996 5667788999999999999999 678888999999999999


Q ss_pred             CCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          624 YNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       624 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      +|++++..   +..+++|+.+++++|||.|+|.
T Consensus       333 ~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          333 HNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             SSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence            99998764   4567899999999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.9e-32  Score=283.60  Aligned_cols=303  Identities=23%  Similarity=0.384  Sum_probs=262.8

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL  383 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (740)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            7899999999999984 34 4889999999999999998 5555  55899999999999999875  458889999999


Q ss_pred             EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858          384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      ++++|.+.+..+  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            999999986543  889999999999999665343 448899999999999999986544  888999999999999986


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS  543 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~  543 (740)
                                    .++. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..        ++
T Consensus       191 --------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~--------l~  243 (347)
T 4fmz_A          191 --------------DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN--------LS  243 (347)
T ss_dssp             --------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT--------CT
T ss_pred             --------------cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc--------CC
Confidence                          3333 7889999999999999986555  8889999999999999986544  433        68


Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  623 (740)
                      +|+.|++++|.+++.  +.+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus       244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence            999999999999864  5789999999999999999974  568999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCccccCCCccccCCCCC
Q 038858          624 YNNLSGKIPEMTTQFATFNESNYKGNPF  651 (740)
Q Consensus       624 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~  651 (740)
                      +|++++..|  +..+++|+.+++++|+.
T Consensus       320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          320 QNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             SSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             CCccccccC--hhhhhccceeehhhhcc
Confidence            999998877  58899999999999986

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-32  Score=293.59  Aligned_cols=345  Identities=17%  Similarity=0.155  Sum_probs=253.8

Q ss_pred             hcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCc
Q 038858          253 ENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ  332 (740)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~  332 (740)
                      +.+++|++|++++|.+++. + .+..+++|++|++++|.+++ +|  + ..+++|++|++++|.+++. +  +.++++|+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~-~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--L-SQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--c-ccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            6889999999999999875 3 68889999999999999984 55  3 3489999999999999864 3  88999999


Q ss_pred             EEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCC
Q 038858          333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN  412 (740)
Q Consensus       333 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  412 (740)
                      +|++++|+++ .++   +..+++|++|++++|++++.   .+..+++|++|++++|+..+..  .+..+++|++|++++|
T Consensus       110 ~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            9999999998 455   44789999999999999885   3678999999999999655554  4778999999999999


Q ss_pred             cCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEE
Q 038858          413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHL  492 (740)
Q Consensus       413 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L  492 (740)
                      .+++ ++  +..+++|+.|++++|.+++.   .+..+++|+.|++++|+++              .+|  +..+++|+.|
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~--------------~ip--~~~l~~L~~L  238 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT--------------EID--VTPLTQLTYF  238 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS--------------CCC--CTTCTTCSEE
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc--------------ccC--ccccCCCCEE
Confidence            9986 44  77899999999999999865   4888999999999999987              344  6778999999


Q ss_pred             EcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc--------Ccc
Q 038858          493 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP--------QIG  564 (740)
Q Consensus       493 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~  564 (740)
                      ++++|.+++..+.   .+++|+.|++++|.+.......-.....-....+++|+.|++++|...+.+|.        .+.
T Consensus       239 ~l~~N~l~~~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~  315 (457)
T 3bz5_A          239 DCSVNPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS  315 (457)
T ss_dssp             ECCSSCCSCCCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred             EeeCCcCCCcCHH---HCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechh
Confidence            9999999976544   45556555555544332111000000000011256777778877765544332        245


Q ss_pred             CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcc
Q 038858          565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNES  644 (740)
Q Consensus       565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~  644 (740)
                      .+++|++|++++|++++.   .+..+++|+.|++++|++++        ++.|..|++++|.++|.     ..+..+..+
T Consensus       316 ~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l  379 (457)
T 3bz5_A          316 QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKE  379 (457)
T ss_dssp             TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCB
T ss_pred             hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcc
Confidence            556677777777777763   26667777777777777763        23455556677777664     234556677


Q ss_pred             ccCCCCCCCCCC
Q 038858          645 NYKGNPFLCGLP  656 (740)
Q Consensus       645 ~~~~Np~~C~~~  656 (740)
                      +++.|.+...-|
T Consensus       380 ~l~~N~l~g~ip  391 (457)
T 3bz5_A          380 TLTNNSLTIAVS  391 (457)
T ss_dssp             CCBTTBEEEECC
T ss_pred             ccccCcEEEEcC
Confidence            777776654433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1e-30  Score=271.26  Aligned_cols=129  Identities=21%  Similarity=0.295  Sum_probs=59.8

Q ss_pred             cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT  567 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  567 (740)
                      +|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..        +++|+.|++++|+++ .+|..+..++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--------LPTLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--------CTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--------CCCCCEEECCCCcCe-ecChhhhcCc
Confidence            4444444444444444444444455555555555544444333333        334444555544444 3444445555


Q ss_pred             cCcEEeCcCCcCCCccchhccCc------CCCcEEECCCCcCC--ccCchhhhcCCCCCEEEccCC
Q 038858          568 RIQTLNLSHNNLTGTILSTFTNL------RHIESLDLYHNKLN--GKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       568 ~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      +|++|++++|++++..+..|...      ++|+.|++++|++.  +..|..|..+++|+.+++++|
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            55555555555554444444332      34555555555554  344444555555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6e-34  Score=310.66  Aligned_cols=361  Identities=19%  Similarity=0.157  Sum_probs=215.3

Q ss_pred             CCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCC----CCCCCCCCCCcCEEeccCCcCcccCChhHhhcCC-
Q 038858          231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGP----FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP-  305 (740)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-  305 (740)
                      ++|+.|+++++.+++.....++..+++|++|++++|.+.+.    .+..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45777888888877655555457788888888888877642    2334566788999999998887655656666565 


Q ss_pred             ---CCcEEEccCCcCcc----cCCccccCCCCCcEEEeecccCCCccChhhhh----cCccCcEEEcCCccccccC----
Q 038858          306 ---SLSSFNISMNALDG----SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI----GCVNLEILVLSNNNLEGHM----  370 (740)
Q Consensus       306 ---~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~----  370 (740)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999998884    45778888999999999999887444433322    2456888888888777543    


Q ss_pred             CcCCCCCCCCCeEEccCCcccccCccccc-----cCCCCCeEEccCCcCccc----CCCCCCCccCcceeeccCCcccCC
Q 038858          371 FSKNFNLTKLSWLLLEDNHFVEEIPQSLS-----KCLSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHLEGP  441 (740)
Q Consensus       371 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~  441 (740)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            23344567788888888777654333332     245777777777777642    344455567777777777766543


Q ss_pred             C-----CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccccccc-----CCC
Q 038858          442 I-----PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLC-----GLN  511 (740)
Q Consensus       442 ~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~  511 (740)
                      .     +..+..+++|++|++++|.+++...         ..++..+..+++|++|++++|.+++..+..+.     ..+
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~---------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  313 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC---------GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC  313 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH---------HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHH---------HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence            2     1122346677777777776651100         01445556666777777777766543333322     124


Q ss_pred             cccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC-----CCcCcEEeCcCCcCCC----c
Q 038858          512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN-----LTRIQTLNLSHNNLTG----T  582 (740)
Q Consensus       512 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~  582 (740)
                      +|++|++++|.+++.....+..    .+..+++|++|++++|.+.+..+..+..     .++|++|+|++|.+++    .
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  389 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSS----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  389 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHH----HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence            6666666666655332111111    1122345555555555554332222211     3455555555555553    3


Q ss_pred             cchhccCcCCCcEEECCCCcCC
Q 038858          583 ILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       583 ~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      ++..+..+++|++|++++|+++
T Consensus       390 l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          390 LAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHhCCCccEEECCCCCCC
Confidence            4444455555555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.6e-30  Score=265.61  Aligned_cols=290  Identities=23%  Similarity=0.300  Sum_probs=148.9

Q ss_pred             CcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEE
Q 038858          281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV  360 (740)
Q Consensus       281 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  360 (740)
                      +++.++++++.+. .+|..+   .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..+ .++++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEE
Confidence            5666777766665 555433   2466666776666665555566666666666666666663323332 3556666666


Q ss_pred             cCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC
Q 038858          361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG  440 (740)
Q Consensus       361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  440 (740)
                      +++|.++......   .++|++|++++|++.+..+..+..+++|++|++++|.+..                      .+
T Consensus       107 Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~  161 (330)
T 1xku_A          107 LSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SG  161 (330)
T ss_dssp             CCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GG
T ss_pred             CCCCcCCccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cC
Confidence            6666555332221   1455555555555554444444455555555555554431                      01


Q ss_pred             CCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCC
Q 038858          441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD  520 (740)
Q Consensus       441 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  520 (740)
                      ..+..+..+++|+.|++++|.++              .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~--------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNIT--------------TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCC--------------SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             cChhhccCCCCcCEEECCCCccc--------------cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            22233334444444444444443              1111111  3455555555555544455555555555555555


Q ss_pred             ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccC------cCCCc
Q 038858          521 NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTN------LRHIE  594 (740)
Q Consensus       521 n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~  594 (740)
                      |.+.+..+..+..        +++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..      .+.|+
T Consensus       226 n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~  296 (330)
T 1xku_A          226 NSISAVDNGSLAN--------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS  296 (330)
T ss_dssp             SCCCEECTTTGGG--------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred             CcCceeChhhccC--------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence            5555444444433        345555555555555 44555555666666666666666555554432      25556


Q ss_pred             EEECCCCcCCc--cCchhhhcCCCCCEEEccCC
Q 038858          595 SLDLYHNKLNG--KIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       595 ~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N  625 (740)
                      .|++++|++..  ..|..|..+++++.+++++|
T Consensus       297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             EEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ceEeecCcccccccCccccccccceeEEEeccc
Confidence            66666666542  34455555666666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4e-30  Score=266.83  Aligned_cols=290  Identities=20%  Similarity=0.256  Sum_probs=208.2

Q ss_pred             CCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEc
Q 038858          330 FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL  409 (740)
Q Consensus       330 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  409 (740)
                      .++.++++++.++ .+|..+   .++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4667777777776 666554   256777788877777776667777888888888888888777777888888888888


Q ss_pred             cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccC
Q 038858          410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL  489 (740)
Q Consensus       410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L  489 (740)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|+.|++++|.+...           +..+..+..+ +|
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l-~L  174 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL-KL  174 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-CC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-cc
Confidence            888887 4444443  7888888888888877667788888888888888877521           1334445555 77


Q ss_pred             cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858          490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI  569 (740)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  569 (740)
                      +.|++++|.+++ +|..+.  ++|++|++++|.+.+..+..+..        +++|+.|++++|.+.+..+..+..+++|
T Consensus       175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L  243 (332)
T 2ft3_A          175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTL  243 (332)
T ss_dssp             SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT--------CTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred             CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC--------CCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence            888888887774 333332  57888888888887776666655        5678888888888877766677778888


Q ss_pred             cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc------CCCCCEEEccCCccc--ccCCCCCccccCC
Q 038858          570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE------LNALVVFSVAYNNLS--GKIPEMTTQFATF  641 (740)
Q Consensus       570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~~~~l  641 (740)
                      ++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.|+.+++++|++.  +..|..+..++.+
T Consensus       244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L  322 (332)
T 2ft3_A          244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR  322 (332)
T ss_dssp             CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred             CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence            88888888877 56666777888888888888887666655544      356778888888776  5566666677777


Q ss_pred             CccccCCCC
Q 038858          642 NESNYKGNP  650 (740)
Q Consensus       642 ~~~~~~~Np  650 (740)
                      +.+++++|.
T Consensus       323 ~~l~l~~n~  331 (332)
T 2ft3_A          323 LAIQFGNYK  331 (332)
T ss_dssp             TTEEC----
T ss_pred             hhhhccccc
Confidence            777777763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.8e-30  Score=264.17  Aligned_cols=290  Identities=21%  Similarity=0.266  Sum_probs=200.9

Q ss_pred             CCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEc
Q 038858          330 FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL  409 (740)
Q Consensus       330 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  409 (740)
                      +++.++++++.++ .+|..+   .++++.|++++|.+++.....+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4566666666665 555543   256777777777777666666777778888888888877777777888888888888


Q ss_pred             cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccC
Q 038858          410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL  489 (740)
Q Consensus       410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L  489 (740)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+...           +..+..+.++++|
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~~L  173 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMKKL  173 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCTTC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-----------CcChhhccCCCCc
Confidence            888877 4444433  6788888888888877777788888888888888877521           2345567777888


Q ss_pred             cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858          490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI  569 (740)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  569 (740)
                      ++|++++|.++. +|..+.  ++|++|++++|.+.+..+..+..        +++|+.|++++|.+++..+..+..+++|
T Consensus       174 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          174 SYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             CEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT--------CTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             CEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC--------CCCCCEEECCCCcCceeChhhccCCCCC
Confidence            888888887774 333332  67777888877777666666655        5677777777777776666677777777


Q ss_pred             cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc------CCCCCEEEccCCcccc--cCCCCCccccCC
Q 038858          570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE------LNALVVFSVAYNNLSG--KIPEMTTQFATF  641 (740)
Q Consensus       570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~~~~l  641 (740)
                      ++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.++.+++++|++..  ..|..+..+..+
T Consensus       243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l  321 (330)
T 1xku_A          243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  321 (330)
T ss_dssp             CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence            77777777777 55666777777777777777777665555543      2567777777777753  444555556666


Q ss_pred             CccccCCC
Q 038858          642 NESNYKGN  649 (740)
Q Consensus       642 ~~~~~~~N  649 (740)
                      +.+++++|
T Consensus       322 ~~l~L~~N  329 (330)
T 1xku_A          322 AAVQLGNY  329 (330)
T ss_dssp             GGEEC---
T ss_pred             eEEEeccc
Confidence            66666665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=9.6e-31  Score=268.38  Aligned_cols=233  Identities=30%  Similarity=0.464  Sum_probs=144.8

Q ss_pred             CCCCCCCCCeEEccC-CcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCC
Q 038858          373 KNFNLTKLSWLLLED-NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDS  451 (740)
Q Consensus       373 ~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  451 (740)
                      .+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            333444444444442 4444444444555555555555555554444444555555555555555555555555555555


Q ss_pred             ccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccc-cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCc
Q 038858          452 LQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPC  530 (740)
Q Consensus       452 L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  530 (740)
                      |++|++++|++++             .+|..+..++ +|++|++++|.+++..|..+..++ |+.|++++|.+.+..|..
T Consensus       151 L~~L~L~~N~l~~-------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~  216 (313)
T 1ogq_A          151 LVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             CCEEECCSSCCEE-------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred             CCeEECcCCcccC-------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence            5555555555442             3344444454 556666666666555555555554 666666666666555555


Q ss_pred             ccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchh
Q 038858          531 FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQ  610 (740)
Q Consensus       531 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  610 (740)
                      +..        +++|+.|++++|.+++..|. +..+++|++|+|++|++++..|..|..+++|++|++++|++++.+|..
T Consensus       217 ~~~--------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          217 FGS--------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCT--------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             Hhc--------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            544        45666666666666655443 667788888888888888888888888888999999999888888875


Q ss_pred             hhcCCCCCEEEccCCc-ccc
Q 038858          611 LVELNALVVFSVAYNN-LSG  629 (740)
Q Consensus       611 ~~~l~~L~~L~l~~N~-l~~  629 (740)
                       ..+++|+.+++++|+ +.|
T Consensus       288 -~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -TTGGGSCGGGTCSSSEEES
T ss_pred             -ccccccChHHhcCCCCccC
Confidence             778888888999888 444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.8e-33  Score=302.31  Aligned_cols=362  Identities=16%  Similarity=0.140  Sum_probs=222.6

Q ss_pred             CCCCEEeccCCcccCCCCCC-CCCCCCcCEEeccCCcCccc----CChhHhhcCCCCcEEEccCCcCcccCCccc-cCCC
Q 038858          256 TKLESLSLVNDSLAGPFRLP-IHSHKSLRLLDVSNNNFQGR----IPAEIGDILPSLSSFNISMNALDGSIPSSF-GNMN  329 (740)
Q Consensus       256 ~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~  329 (740)
                      ++|++|+++++.+++..... +..+++|++|++++|.+.+.    ++..+. .+++|++|++++|.+++..+..+ ..++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            45677788777765433222 45567788888888777632    222222 36778888888877765333222 2233


Q ss_pred             ----CCcEEEeecccCCCc----cChhhhhcCccCcEEEcCCccccccCCcCC-----CCCCCCCeEEccCCcccccC--
Q 038858          330 ----FLQILDLSNNHLTGE----IPEHLAIGCVNLEILVLSNNNLEGHMFSKN-----FNLTKLSWLLLEDNHFVEEI--  394 (740)
Q Consensus       330 ----~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~--  394 (740)
                          +|++|++++|.+++.    ++.. +..+++|++|++++|.+.+.....+     ...++|++|++++|++....  
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence                578888888877632    2322 3367778888888877664332221     22456888888888776543  


Q ss_pred             --ccccccCCCCCeEEccCCcCcccCCCCCC-----CccCcceeeccCCcccCC----CCccccCCCCccEEeccCCcCC
Q 038858          395 --PQSLSKCLSLEGLHLNNNNLSGKIPQWLG-----NLTGLQYIIIPENHLEGP----IPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       395 --~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                        +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|++.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence              44556677788888888776543222222     244777888888777653    3455666777888888777765


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEccccccccc----ccccccCCCcccEEeCCCccccCCCCCcccccccchh
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGE----VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHER  539 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  539 (740)
                      +...        ....+..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+...   ..
T Consensus       241 ~~~~--------~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l~  309 (461)
T 1z7x_W          241 DVGM--------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET---LL  309 (461)
T ss_dssp             HHHH--------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH---HT
T ss_pred             hHHH--------HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH---hc
Confidence            2100        000012223467788888888877653    45556667778888888877654332222210   00


Q ss_pred             hhccccceEEccCcccccc----CCcCccCCCcCcEEeCcCCcCCCccchhccC-----cCCCcEEECCCCcCCc----c
Q 038858          540 RVLSLLSGIDLSCNKLIGD----IPPQIGNLTRIQTLNLSHNNLTGTILSTFTN-----LRHIESLDLYHNKLNG----K  606 (740)
Q Consensus       540 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~  606 (740)
                      ...++|+.|++++|.+++.    ++..+..+++|++|+|++|.+++..+..+..     .++|++|++++|++++    .
T Consensus       310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  389 (461)
T 1z7x_W          310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  389 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence            0124777888888877654    3445566677888888888777654444432     5678888888887775    5


Q ss_pred             CchhhhcCCCCCEEEccCCccccc
Q 038858          607 IPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       607 ~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      +|..+..+++|++|++++|++++.
T Consensus       390 l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          390 LAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHhCCCccEEECCCCCCCHH
Confidence            677777777888888888877653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=9.4e-29  Score=266.92  Aligned_cols=233  Identities=24%  Similarity=0.300  Sum_probs=175.1

Q ss_pred             CCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCch
Q 038858          402 LSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD  481 (740)
Q Consensus       402 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~  481 (740)
                      ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++             ..+.
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~  130 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-------------IPNG  130 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-------------CCTT
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-------------eCHh
Confidence            456666666666665555666666666666666666666555666666777777777666651             2223


Q ss_pred             hhhccccCcEEEcccccccccccccccCCCcccEEeCCCcc-ccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858          482 RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNK-LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP  560 (740)
Q Consensus       482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  560 (740)
                      .|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|..        +++|+.|++++|.++ .+|
T Consensus       131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L~~n~l~-~~~  201 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--------LSNLRYLNLAMCNLR-EIP  201 (440)
T ss_dssp             TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CSSCCEEECTTSCCS-SCC
T ss_pred             HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc--------ccccCeecCCCCcCc-ccc
Confidence            45666777777777777766666667777777777777743 43333434444        567888888888777 344


Q ss_pred             cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccC
Q 038858          561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT  640 (740)
Q Consensus       561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  640 (740)
                       .+..+++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence             4778889999999999999888899999999999999999999888888999999999999999999888888888999


Q ss_pred             CCccccCCCCCCCCCCC
Q 038858          641 FNESNYKGNPFLCGLPL  657 (740)
Q Consensus       641 l~~~~~~~Np~~C~~~~  657 (740)
                      |+.+++++|||.|+|..
T Consensus       281 L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          281 LERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCEEECCSSCEECSSTT
T ss_pred             CCEEEcCCCCccCCCCc
Confidence            99999999999999964

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.2e-28  Score=267.02  Aligned_cols=232  Identities=22%  Similarity=0.251  Sum_probs=163.5

Q ss_pred             CCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh
Q 038858          403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR  482 (740)
Q Consensus       403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  482 (740)
                      ++++|++++|.+++..+..|.++++|+.|++++|.+++..+..|.++++|++|++++|++++             ..+..
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~  142 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-------------IPSGA  142 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-------------CCTTT
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-------------cChhh
Confidence            45555555555554445555555555555555555555555555555555555555555541             22233


Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCc-cccCCCCCcccccccchhhhccccceEEccCccccccCCc
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN-KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP  561 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  561 (740)
                      |..+++|++|++++|.++...+..+..+++|+.|++++| .+....+..|..        +++|+.|++++|.+++. | 
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L~~n~l~~~-~-  212 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG--------LFNLKYLNLGMCNIKDM-P-  212 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CTTCCEEECTTSCCSSC-C-
T ss_pred             hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC--------CCCCCEEECCCCccccc-c-
Confidence            455566666666666666555556666666666666663 333333333443        55777777777777643 3 


Q ss_pred             CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCC
Q 038858          562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATF  641 (740)
Q Consensus       562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  641 (740)
                      .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            47788899999999999998888999999999999999999998888889999999999999999998888888889999


Q ss_pred             CccccCCCCCCCCCCC
Q 038858          642 NESNYKGNPFLCGLPL  657 (740)
Q Consensus       642 ~~~~~~~Np~~C~~~~  657 (740)
                      +.+++++|||.|+|+.
T Consensus       293 ~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          293 VELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CEEECCSSCEECSTTT
T ss_pred             CEEEccCCCcCCCCCc
Confidence            9999999999999974

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.8e-29  Score=256.46  Aligned_cols=251  Identities=22%  Similarity=0.255  Sum_probs=186.9

Q ss_pred             eEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCC--CCccccCCCCccEEeccC
Q 038858          382 WLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGP--IPVAFCQLDSLQILGISD  459 (740)
Q Consensus       382 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~  459 (740)
                      .++.+++.+... |..+  .++|++|++++|.++...+..+..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            444555444332 2222  24666777777766644444566677777777777766532  244555677777777777


Q ss_pred             CcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccch
Q 038858          460 NNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHE  538 (740)
Q Consensus       460 n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  538 (740)
                      |.+.              .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..     
T Consensus        88 n~i~--------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----  148 (306)
T 2z66_A           88 NGVI--------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----  148 (306)
T ss_dssp             CSEE--------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-----
T ss_pred             Cccc--------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-----
Confidence            7765              445556677788888888887775554 56777888888888888887777666655     


Q ss_pred             hhhccccceEEccCccccc-cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858          539 RRVLSLLSGIDLSCNKLIG-DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL  617 (740)
Q Consensus       539 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  617 (740)
                         +++|++|++++|.+.+ ..|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|
T Consensus       149 ---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          149 ---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             ---CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             ---CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence               5688888888888876 567788888999999999999988888889999999999999999987777788888999


Q ss_pred             CEEEccCCcccccCCCCCcccc-CCCccccCCCCCCCCCCC
Q 038858          618 VVFSVAYNNLSGKIPEMTTQFA-TFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       618 ~~L~l~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~~~  657 (740)
                      ++|++++|++++..|..+..++ +++.+++++||+.|+|+.
T Consensus       226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            9999999999988888778774 899999999999999863

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=263.79  Aligned_cols=284  Identities=21%  Similarity=0.216  Sum_probs=170.2

Q ss_pred             CCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCe
Q 038858          327 NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEG  406 (740)
Q Consensus       327 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  406 (740)
                      .|+.....+.+++.++ .+|..+.   ++|++|++++|.+++.....+..+++|++|++++|++.+..+..|..+++|++
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3455556777777777 6776543   46777777777777766666677777777777777777666666777777777


Q ss_pred             EEccCCcCcccCCCCCCCccCcceeeccCCcccCCCC-ccccCCCCccEEeccCCc-CCCCCCCCCCCCcCCccCchhhh
Q 038858          407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP-VAFCQLDSLQILGISDNN-ISGSLPSYLSYNRLNGSIPDRID  484 (740)
Q Consensus       407 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~n~l~~~~~~~~~  484 (740)
                      |++++|.+++..+..+..+++|++|++++|.+++... ..+..+++|++|++++|. +.             +..+..+.
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------~~~~~~~~  171 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-------------KIQRKDFA  171 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------EECTTTTT
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-------------ccCHHHcc
Confidence            7777777764444446666777777777777664443 356666777777776663 32             12234455


Q ss_pred             ccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCcc
Q 038858          485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG  564 (740)
Q Consensus       485 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  564 (740)
                      ++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+        ..+++|+.|++++|.+++..+..+.
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DVTSSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HHTTTEEEEEEESCBCTTCCCC---
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh--------hhcccccEEECCCCccccccccccc
Confidence            66666666666666666666666666666666666666542211111        1134555566665555543332221


Q ss_pred             CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCc----cCchhhhcCCCCCEEEccCCcccccCCCCCccccC
Q 038858          565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG----KIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT  640 (740)
Q Consensus       565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  640 (740)
                      .                     ....+.++.++++++.+++    .+|..+..+++|++|++++|+++...+..+..+++
T Consensus       244 ~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~  302 (353)
T 2z80_A          244 T---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS  302 (353)
T ss_dssp             ------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             c---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCC
Confidence            1                     1123444555555555543    34555666666666666666666444444466667


Q ss_pred             CCccccCCCCCCCCCC
Q 038858          641 FNESNYKGNPFLCGLP  656 (740)
Q Consensus       641 l~~~~~~~Np~~C~~~  656 (740)
                      |+.+++++||+.|+|+
T Consensus       303 L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          303 LQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             CCEEEeeCCCccCcCC
Confidence            7777777777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.2e-28  Score=243.72  Aligned_cols=209  Identities=24%  Similarity=0.297  Sum_probs=107.9

Q ss_pred             CcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc-ccccccc
Q 038858          427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN-LEGEVPV  505 (740)
Q Consensus       427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~  505 (740)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++             ..|..+..+++|++|++++|. +....+.
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------------IDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-------------ECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce-------------eCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence            44444444444443333444444444444444444331             122334444444444444443 4433344


Q ss_pred             cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccch
Q 038858          506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS  585 (740)
Q Consensus       506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  585 (740)
                      .+..+++|++|++++|.+.+..+..+..        +++|++|++++|.+.+..+..|..+++|++|++++|++++..+.
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRG--------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhC--------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence            4455555555555555555444444433        34555555555555544444455555666666666655554444


Q ss_pred             hccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          586 TFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       586 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      .|..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            55556666666666666655555555556666666666666655544445555566666666666666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.8e-28  Score=253.51  Aligned_cols=283  Identities=21%  Similarity=0.211  Sum_probs=216.1

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL  383 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (740)
                      ++.....+.+++.++ .+|..+.  ++|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            566777899999998 4666554  58999999999998 6776566689999999999999999888889999999999


Q ss_pred             EccCCcccccCccccccCCCCCeEEccCCcCcccCC-CCCCCccCcceeeccCC-cccCCCCccccCCCCccEEeccCCc
Q 038858          384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP-QWLGNLTGLQYIIIPEN-HLEGPIPVAFCQLDSLQILGISDNN  461 (740)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~  461 (740)
                      ++++|++.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999997777678999999999999999985444 47889999999999999 4776777889999999999999998


Q ss_pred             CCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhh
Q 038858          462 ISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRV  541 (740)
Q Consensus       462 l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  541 (740)
                      +.+             ..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+...       
T Consensus       186 l~~-------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-------  245 (353)
T 2z80_A          186 LQS-------------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG-------  245 (353)
T ss_dssp             CCE-------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred             cCc-------------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc-------
Confidence            873             446678889999999999999976555556678999999999999987655443221       


Q ss_pred             ccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCC----ccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858          542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTG----TILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL  617 (740)
Q Consensus       542 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  617 (740)
                                            ...+.++.++|+++.+++    .+|..+..+++|++|++++|+++...+..|..+++|
T Consensus       246 ----------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  303 (353)
T 2z80_A          246 ----------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL  303 (353)
T ss_dssp             -----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ----------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence                                  112234444444444443    245556666666666666666663322224666666


Q ss_pred             CEEEccCCcccccCC
Q 038858          618 VVFSVAYNNLSGKIP  632 (740)
Q Consensus       618 ~~L~l~~N~l~~~~~  632 (740)
                      ++|++++|++++..|
T Consensus       304 ~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          304 QKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CEEECCSSCBCCCHH
T ss_pred             CEEEeeCCCccCcCC
Confidence            667777666665433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.3e-27  Score=245.15  Aligned_cols=230  Identities=24%  Similarity=0.264  Sum_probs=114.2

Q ss_pred             cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc--CccccccCCCCCeEEccCCcCcccCCCCCCCccCcceee
Q 038858          355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE--IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYII  432 (740)
Q Consensus       355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  432 (740)
                      +|++|++++|.+.......+..+++|++|++++|++...  .+..+..+++|++|++++|.+. .++..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence            444444444444443333344445555555555544322  1233344455555555555544 2233344444444444


Q ss_pred             ccCCcccCCCC-ccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCC
Q 038858          433 IPENHLEGPIP-VAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN  511 (740)
Q Consensus       433 l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  511 (740)
                      +++|.+++..+ ..+..+++|++|++++|.                                     +.+..+..+..++
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------------------------------------l~~~~~~~~~~l~  150 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-------------------------------------TRVAFNGIFNGLS  150 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSC-------------------------------------CEECSTTTTTTCT
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCc-------------------------------------CCccchhhcccCc
Confidence            44444443322 233444444444444443                                     3333333344444


Q ss_pred             cccEEeCCCccccC-CCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCc
Q 038858          512 QLQLLDLSDNKLHG-LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL  590 (740)
Q Consensus       512 ~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  590 (740)
                      +|++|++++|.+.+ ..|..+..        +++|+.|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             CCCEEECCCCccccccchhHHhh--------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            44444444444433 22333332        3345555555555554445555666666666666666665555566666


Q ss_pred             CCCcEEECCCCcCCccCchhhhcCC-CCCEEEccCCccccc
Q 038858          591 RHIESLDLYHNKLNGKIPCQLVELN-ALVVFSVAYNNLSGK  630 (740)
Q Consensus       591 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~  630 (740)
                      ++|++|++++|++++..|..+..++ +|++|++++|++++.
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            6666666666666666666666653 666666666666643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=7.3e-30  Score=287.66  Aligned_cols=235  Identities=16%  Similarity=0.102  Sum_probs=117.8

Q ss_pred             hhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCC-CCCCCCCCcCEEeccCCcCcccCChhHhhcC
Q 038858          226 FLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFR-LPIHSHKSLRLLDVSNNNFQGRIPAEIGDIL  304 (740)
Q Consensus       226 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  304 (740)
                      .+..+++|+.++++++.. +.+|.. +..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+
T Consensus       265 ~l~~~~~L~~L~l~~~~~-~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~  341 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGP-NEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC  341 (592)
T ss_dssp             CCCCCTTCCEEEETTCCT-TTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred             HhhccccccccCccccch-hHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence            334445555555555322 123332 2455555555555555432211 113445566666665 333323333333345


Q ss_pred             CCCcEEEccC-----------CcCccc-CCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcC----Cccccc
Q 038858          305 PSLSSFNISM-----------NALDGS-IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS----NNNLEG  368 (740)
Q Consensus       305 ~~L~~L~l~~-----------n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~----~n~l~~  368 (740)
                      ++|++|++++           +.+++. .+..+..+++|++|+++.+.+++..+..+...+++|++|+++    .|.+++
T Consensus       342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~  421 (592)
T 3ogk_B          342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD  421 (592)
T ss_dssp             TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred             CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence            6666666662           333322 111233456666666666666544444444446666666664    344443


Q ss_pred             cC-----CcCCCCCCCCCeEEccCCc--ccccCccccc-cCCCCCeEEccCCcCcc-cCCCCCCCccCcceeeccCCccc
Q 038858          369 HM-----FSKNFNLTKLSWLLLEDNH--FVEEIPQSLS-KCLSLEGLHLNNNNLSG-KIPQWLGNLTGLQYIIIPENHLE  439 (740)
Q Consensus       369 ~~-----~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~  439 (740)
                      .+     ...+.++++|+.|++++|.  ++......+. .+++|++|++++|.+++ ..+..+.++++|++|++++|.++
T Consensus       422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            21     1113346667777765433  3333222222 36667777777776654 22333455677777777777765


Q ss_pred             CC-CCccccCCCCccEEeccCCcCC
Q 038858          440 GP-IPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       440 ~~-~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      +. .+..+..+++|++|++++|+++
T Consensus       502 ~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          502 ERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHHHHHHHhcCccCeeECcCCcCC
Confidence            33 2223345677777777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5.2e-30  Score=288.86  Aligned_cols=433  Identities=12%  Similarity=0.092  Sum_probs=273.3

Q ss_pred             HHHHhcCCCCCEEEcCCCCCC---CcCCCCCCC------------CCCCCCEEecCCCccccCccchHHHhccCCC-CcE
Q 038858           50 QSIASIFPSLKSLSMIDCKVN---GVVRSQGFP------------HFKSLEYLDMNTACIALNASFLQIIGASMPF-LKY  113 (740)
Q Consensus        50 ~~l~~~l~~L~~L~l~~~~~~---~~~~~~~l~------------~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~-L~~  113 (740)
                      ..+...+++|++|++++|...   +.+|.. +.            .+++|++|+|++|  .+.+..+..+...++. |++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~  142 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPEN-WGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDLDRLAKARADDLET  142 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTT-SCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhccccccc-ccccchHHHHHHHhhCCCCCeEEeecc--EecHHHHHHHHHhccccCcE
Confidence            333333777888888775431   122211 22            5788888888888  5556666666553444 888


Q ss_pred             EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc----cCccccCCCCCCEEEccCCcCccccCCCchhhccccc
Q 038858          114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS----LPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNN  189 (740)
Q Consensus       114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  189 (740)
                      |++++|.... ...++. ....+++|++|++++|.+.+.    ++.....+++|++|++++|.+++...           
T Consensus       143 L~L~~~~~~~-~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~-----------  209 (592)
T 3ogk_B          143 LKLDKCSGFT-TDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-----------  209 (592)
T ss_dssp             EEEESCEEEE-HHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-----------
T ss_pred             EECcCCCCcC-HHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-----------
Confidence            8888775210 001111 234678888888888887654    23345667888999888887652110           


Q ss_pred             ccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCccc
Q 038858          190 EINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLA  269 (740)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  269 (740)
                                                     ..++..+..+++|+.|++++|.+.+ ++.. +..+++|++|+++.....
T Consensus       210 -------------------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~  256 (592)
T 3ogk_B          210 -------------------------------KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNED  256 (592)
T ss_dssp             -------------------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCC
T ss_pred             -------------------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccc
Confidence                                           0123344556778888888877764 4444 477788888888753222


Q ss_pred             ---CCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCC-ccccCCCCCcEEEeecccCCCcc
Q 038858          270 ---GPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIP-SSFGNMNFLQILDLSNNHLTGEI  345 (740)
Q Consensus       270 ---~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~  345 (740)
                         ......+..+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+++ +.+.+..
T Consensus       257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~  333 (592)
T 3ogk_B          257 IGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG  333 (592)
T ss_dssp             TTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH
T ss_pred             cchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH
Confidence               223345667788888888876433 4554433 37788888888888764333 345778888888888 4444344


Q ss_pred             ChhhhhcCccCcEEEcCC-----------ccccccCCcC-CCCCCCCCeEEccCCcccccCcccccc-CCCCCeEEcc--
Q 038858          346 PEHLAIGCVNLEILVLSN-----------NNLEGHMFSK-NFNLTKLSWLLLEDNHFVEEIPQSLSK-CLSLEGLHLN--  410 (740)
Q Consensus       346 ~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~--  410 (740)
                      ...+...+++|++|++++           +.+++..... ...+++|++|+++.+.+++.....+.. +++|++|+++  
T Consensus       334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~  413 (592)
T 3ogk_B          334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL  413 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred             HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence            444445688888888883           4554332222 235788999998888877665555554 8889999986  


Q ss_pred             --CCcCccc-----CCCCCCCccCcceeeccCCc--ccCCCCccc-cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858          411 --NNNLSGK-----IPQWLGNLTGLQYIIIPENH--LEGPIPVAF-CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP  480 (740)
Q Consensus       411 --~n~i~~~-----~~~~l~~l~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  480 (740)
                        .|.+++.     ++..+.++++|+.|+++.|.  +++.....+ ..+++|++|++++|++++.            .++
T Consensus       414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~  481 (592)
T 3ogk_B          414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE------------GLM  481 (592)
T ss_dssp             SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH------------HHH
T ss_pred             CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH------------HHH
Confidence              4455532     12224568889999987543  443333333 3478899999998887621            344


Q ss_pred             hhhhccccCcEEEccccccccc-ccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCc
Q 038858          481 DRIDGLLRLSHLILAHNNLEGE-VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN  553 (740)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n  553 (740)
                      ..+.++++|++|++++|.+++. .+.....+++|+.|++++|++++.....+..       .++.+....+..+
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~-------~~p~l~~~~~~~~  548 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM-------ARPYWNIELIPSR  548 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG-------CCTTEEEEEECCC
T ss_pred             HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH-------hCCCcEEEEecCc
Confidence            5567788999999999987644 3344567889999999999987654433332       1355555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.6e-26  Score=234.29  Aligned_cols=85  Identities=21%  Similarity=0.223  Sum_probs=39.1

Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  623 (740)
                      +|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus       154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            33444444444333333334444444444444444444444444444445555555554444443444444455555555


Q ss_pred             CCccc
Q 038858          624 YNNLS  628 (740)
Q Consensus       624 ~N~l~  628 (740)
                      +|++.
T Consensus       234 ~N~~~  238 (285)
T 1ozn_A          234 DNPWV  238 (285)
T ss_dssp             SSCEE
T ss_pred             CCCcc
Confidence            55444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.1e-26  Score=237.41  Aligned_cols=236  Identities=21%  Similarity=0.320  Sum_probs=184.9

Q ss_pred             CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEe
Q 038858          377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILG  456 (740)
Q Consensus       377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  456 (740)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            456677777777766 44555666777778888777777 66777777788888888888777 5567777788888888


Q ss_pred             ccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCccccccc
Q 038858          457 ISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTAL  536 (740)
Q Consensus       457 l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  536 (740)
                      +++|.+.+.+|..+....    .+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++. |..+..   
T Consensus       157 L~~n~~~~~~p~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~---  227 (328)
T 4fcg_A          157 IRACPELTELPEPLASTD----ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHH---  227 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-----CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGG---
T ss_pred             CCCCCCccccChhHhhcc----chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhcc---
Confidence            888777766665443322    2233566888999999999888 6777888889999999999988854 334544   


Q ss_pred             chhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCC
Q 038858          537 HERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA  616 (740)
Q Consensus       537 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  616 (740)
                           +++|+.|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++
T Consensus       228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                 678999999998888888888999999999999999888888888999999999999999998899999999999


Q ss_pred             CCEEEccCCcccc
Q 038858          617 LVVFSVAYNNLSG  629 (740)
Q Consensus       617 L~~L~l~~N~l~~  629 (740)
                      |+.+++..|.+..
T Consensus       303 L~~l~l~~~~~~~  315 (328)
T 4fcg_A          303 NCIILVPPHLQAQ  315 (328)
T ss_dssp             TCEEECCGGGSCC
T ss_pred             ceEEeCCHHHHHH
Confidence            9999888776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=8.2e-26  Score=244.81  Aligned_cols=248  Identities=25%  Similarity=0.266  Sum_probs=164.4

Q ss_pred             CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858          331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN  410 (740)
Q Consensus       331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  410 (740)
                      .+.++.++..++ .+|..+.   +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456777777777 6776542   577888888888887777777778888888888888877777777778888888888


Q ss_pred             CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858          411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS  490 (740)
Q Consensus       411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~  490 (740)
                      +|.++...+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|...+.            ..+..|.++++|+
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~  199 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------------ISEGAFEGLFNLK  199 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCTTCC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc------------cChhhccCCCCCC
Confidence            8887766666677777888888888877766666777777777777777443221            1223455666667


Q ss_pred             EEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCc
Q 038858          491 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ  570 (740)
Q Consensus       491 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  570 (740)
                      +|++++|.+++. | .+..+++|+.|++++|.+.+..|..|..        +++|+.|++++|.+.+..+..|..+++|+
T Consensus       200 ~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          200 YLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG--------LSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             EEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             EEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------ccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            777776666633 2 3555666666666666666555555544        44566666666666555555555566666


Q ss_pred             EEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          571 TLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       571 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      .|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            6666666665555555555566666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9.9e-26  Score=243.25  Aligned_cols=248  Identities=27%  Similarity=0.306  Sum_probs=168.0

Q ss_pred             CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858          331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN  410 (740)
Q Consensus       331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  410 (740)
                      .+.++.++..++ .+|..+.   ++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            446666666666 6666543   567777777777777777777778888888888888777777777788888888888


Q ss_pred             CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858          411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS  490 (740)
Q Consensus       411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~  490 (740)
                      +|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|...+.            ..+..|.++++|+
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~  188 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------------ISEGAFEGLSNLR  188 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCSSCC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce------------eCcchhhcccccC
Confidence            8888766666777788888888888887766666777777888888777543321            2223466667777


Q ss_pred             EEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCc
Q 038858          491 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ  570 (740)
Q Consensus       491 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  570 (740)
                      +|++++|.++. +| .+..+++|+.|++++|.+++..|..|..        +++|+.|++++|.+++..+..|..+++|+
T Consensus       189 ~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          189 YLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG--------LMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             EEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------CTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             eecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------CccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            77777777663 23 3556666666666666666655555554        45666666666666666666666666666


Q ss_pred             EEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          571 TLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       571 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      .|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            6666666666655566666666666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.3e-26  Score=235.97  Aligned_cols=226  Identities=20%  Similarity=0.226  Sum_probs=205.5

Q ss_pred             cCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccC
Q 038858          400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSI  479 (740)
Q Consensus       400 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  479 (740)
                      ..+.+++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.              .+
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--------------~l  142 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--------------AL  142 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--------------CC
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--------------cC
Confidence            3578999999999998 77888888999999999999999 78888999999999999999987              67


Q ss_pred             chhhhccccCcEEEcccccccccccccccC---------CCcccEEeCCCccccCCCCCcccccccchhhhccccceEEc
Q 038858          480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCG---------LNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDL  550 (740)
Q Consensus       480 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  550 (740)
                      |..+..+++|++|++++|.+.+..|..+..         +++|++|++++|.++ .+|..+..        +++|+.|++
T Consensus       143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~--------l~~L~~L~L  213 (328)
T 4fcg_A          143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN--------LQNLKSLKI  213 (328)
T ss_dssp             CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG--------CTTCCEEEE
T ss_pred             cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC--------CCCCCEEEc
Confidence            788999999999999999888888877654         999999999999998 56666655        679999999


Q ss_pred             cCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          551 SCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       551 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      ++|.+++ +|..+..+++|++|+|++|.+.+.+|..|..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.
T Consensus       214 ~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             ESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             cCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            9999995 666799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCccccCCCCC
Q 038858          631 IPEMTTQFATFNESNYKGNPF  651 (740)
Q Consensus       631 ~~~~~~~~~~l~~~~~~~Np~  651 (740)
                      +|..+..+++++.+++..|..
T Consensus       293 iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          293 LPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CCGGGGGSCTTCEEECCGGGS
T ss_pred             ccHHHhhccCceEEeCCHHHH
Confidence            999999999999888876644

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=8.1e-25  Score=242.49  Aligned_cols=265  Identities=25%  Similarity=0.283  Sum_probs=137.7

Q ss_pred             CcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEE
Q 038858          281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV  360 (740)
Q Consensus       281 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  360 (740)
                      +++.|++++|.++ .+|..+.   ++|++|++++|.++. +|.   .+++|++|++++|+++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            4667777777766 6665443   567777777776663 343   3566777777777766 4554    356666666


Q ss_pred             cCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC
Q 038858          361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG  440 (740)
Q Consensus       361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  440 (740)
                      +++|.+++...    .+++|+.|++++|++... |.   .+++|++|++++|.+++ +|.   .+++|+.|++++|.+++
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            66666665432    345666666666665542 22   13566666666666553 222   23455666666666553


Q ss_pred             CCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCC
Q 038858          441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD  520 (740)
Q Consensus       441 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  520 (740)
                      . |   ..+++|+.|++++|.+++              +|.   .+++|+.|++++|.++. +|.   .+++|+.|++++
T Consensus       176 l-~---~~~~~L~~L~Ls~N~l~~--------------l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~  230 (622)
T 3g06_A          176 L-P---MLPSGLQELSVSDNQLAS--------------LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSG  230 (622)
T ss_dssp             C-C---CCCTTCCEEECCSSCCSC--------------CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCS
T ss_pred             C-c---ccCCCCcEEECCCCCCCC--------------CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccC
Confidence            2 2   234555666666555541              111   12455555555555542 221   124455555555


Q ss_pred             ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCC
Q 038858          521 NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH  600 (740)
Q Consensus       521 n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  600 (740)
                      |.+++. |.   .        +++|+.|++++|.++. +|.   .+++|+.|+|++|+++ .+|..|.++++|+.|+|++
T Consensus       231 N~L~~l-p~---~--------l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          231 NRLTSL-PV---L--------PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             SCCSCC-CC---C--------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CccCcC-CC---C--------CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            555432 11   0        2345555555555542 222   3344555555555554 3344445555555555555


Q ss_pred             CcCCccCchhhh
Q 038858          601 NKLNGKIPCQLV  612 (740)
Q Consensus       601 N~l~~~~~~~~~  612 (740)
                      |++++..|..+.
T Consensus       294 N~l~~~~~~~l~  305 (622)
T 3g06_A          294 NPLSERTLQALR  305 (622)
T ss_dssp             CCCCHHHHHHHH
T ss_pred             CCCCCcCHHHHH
Confidence            555444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=6.9e-27  Score=254.31  Aligned_cols=247  Identities=21%  Similarity=0.171  Sum_probs=160.7

Q ss_pred             CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEe
Q 038858          377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILG  456 (740)
Q Consensus       377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  456 (740)
                      +++|++|++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            3455555565555555555555566666666666666554333  555666666666666655322     125666666


Q ss_pred             ccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCccccccc
Q 038858          457 ISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTAL  536 (740)
Q Consensus       457 l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  536 (740)
                      +++|.+++..             +   ..+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+..   
T Consensus       106 L~~N~l~~~~-------------~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---  166 (487)
T 3oja_A          106 AANNNISRVS-------------C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---  166 (487)
T ss_dssp             CCSSCCCCEE-------------E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---
T ss_pred             CcCCcCCCCC-------------c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---
Confidence            6666665221             1   12356677777777777666666667777777777777776655555431   


Q ss_pred             chhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCC
Q 038858          537 HERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA  616 (740)
Q Consensus       537 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  616 (740)
                          .+++|+.|++++|.+++..  ....+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++
T Consensus       167 ----~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~  238 (487)
T 3oja_A          167 ----SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQN  238 (487)
T ss_dssp             ----GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             ----hCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence                1457777777777777552  23357788888888888886444 47788888888888888884 6667778888


Q ss_pred             CCEEEccCCccc-ccCCCCCccccCCCccccC-------CCCCCCCCCC
Q 038858          617 LVVFSVAYNNLS-GKIPEMTTQFATFNESNYK-------GNPFLCGLPL  657 (740)
Q Consensus       617 L~~L~l~~N~l~-~~~~~~~~~~~~l~~~~~~-------~Np~~C~~~~  657 (740)
                      |+.|++++|++. +.+|..+..++.++.+++.       +||+.|.|+.
T Consensus       239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             CCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            888888888887 4555555666666666665       8999998763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.6e-27  Score=242.56  Aligned_cols=257  Identities=20%  Similarity=0.186  Sum_probs=141.2

Q ss_pred             CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858          331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN  410 (740)
Q Consensus       331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  410 (740)
                      ++..+++.+.+. ..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            344455555554 4444455556677777777777776665566667777777777777665443  6666777777777


Q ss_pred             CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858          411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS  490 (740)
Q Consensus       411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~  490 (740)
                      +|.+++..     ..++|++|++++|.+++..+.   .+++|++|++++|++++             ..+..+..+++|+
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~  147 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQ  147 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-------------ccchhhhccCCCC
Confidence            77665322     225666666666666544332   24556666666666542             2223455556666


Q ss_pred             EEEcccccccccccccc-cCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858          491 HLILAHNNLEGEVPVQL-CGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI  569 (740)
Q Consensus       491 ~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  569 (740)
                      +|++++|.+++..+..+ ..+++|++|++++|.+++..+..+          +++|+.|++++|.+++. |..+..+++|
T Consensus       148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------l~~L~~L~Ls~N~l~~l-~~~~~~l~~L  216 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----------FAKLKTLDLSSNKLAFM-GPEFQSAAGV  216 (317)
T ss_dssp             EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC----------CTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred             EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc----------cccCCEEECCCCcCCcc-hhhhcccCcc
Confidence            66666666655544444 245566666666665554321111          34555555555555532 2234555555


Q ss_pred             cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC-ccCchhhhcCCCCCEEEcc
Q 038858          570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN-GKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~  623 (740)
                      +.|+|++|++++ +|..+..+++|+.|++++|++. +..|..+..+++|+.++++
T Consensus       217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            555555555552 3444555555555555555554 4444444555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=4e-27  Score=242.16  Aligned_cols=261  Identities=20%  Similarity=0.160  Sum_probs=205.7

Q ss_pred             cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeecc
Q 038858          355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP  434 (740)
Q Consensus       355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  434 (740)
                      +++..+++.+.+.......+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555666666665555555567889999999999988877888899999999999999875544  7888999999999


Q ss_pred             CCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCccc
Q 038858          435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQ  514 (740)
Q Consensus       435 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  514 (740)
                      +|.+++..     ..++|++|++++|++++..             +   ..+++|++|++++|.+++..+..+..+++|+
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~-------------~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~  147 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVS-------------C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ  147 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEE-------------E---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcC-------------c---cccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence            99887432     3488999999999887321             1   2357799999999999888788888899999


Q ss_pred             EEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCc
Q 038858          515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIE  594 (740)
Q Consensus       515 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  594 (740)
                      +|++++|.+.+..+..+..       .+++|+.|++++|.+++..  ....+++|++|+|++|++++. +..+..+++|+
T Consensus       148 ~L~Ls~N~l~~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~  217 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAELAA-------SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVT  217 (317)
T ss_dssp             EEECTTSCCCEEEGGGGGG-------GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCS
T ss_pred             EEECCCCCCCcccHHHHhh-------ccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCccc
Confidence            9999999988766655531       1578999999999998652  334588999999999999864 44588899999


Q ss_pred             EEECCCCcCCccCchhhhcCCCCCEEEccCCccc-ccCCCCCccccCCCccccCCC
Q 038858          595 SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS-GKIPEMTTQFATFNESNYKGN  649 (740)
Q Consensus       595 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~~~~~~N  649 (740)
                      +|++++|+++ .+|..+..+++|+.|++++|+++ +..|..+..++.++.+++.++
T Consensus       218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            9999999998 56777888899999999999998 666777777778888777743

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.7e-25  Score=224.02  Aligned_cols=209  Identities=23%  Similarity=0.277  Sum_probs=165.4

Q ss_pred             cCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccc
Q 038858          426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV  505 (740)
Q Consensus       426 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  505 (740)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+             ..+..|..+++|++|++++|.+++..+.
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-------------IEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-------------ECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-------------cCHHHccCCcCCCEEECCCCccCccChh
Confidence            457777777777766665667777777777777776652             2334566677777777777777777777


Q ss_pred             cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc-CCcCccCCCcCcEEeCcCCcCCCccc
Q 038858          506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD-IPPQIGNLTRIQTLNLSHNNLTGTIL  584 (740)
Q Consensus       506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~  584 (740)
                      .+.++++|++|++++|.+.+..+..+..        +++|++|++++|.+.+. +|..+..+++|++|++++|++++..+
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTT--------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             hhcCCccccEEECCCCCccccCchhccc--------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            7788888888888888887766655555        56888888888888764 58889999999999999999998888


Q ss_pred             hhccCcCCCc----EEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          585 STFTNLRHIE----SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       585 ~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      ..|..+++|+    +|++++|++++..+..+ ...+|+.|++++|++++..+..+..+++++.+++++|||.|+|+
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            8888887777    89999999996655554 44589999999999998888888889999999999999999997

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=8.7e-27  Score=239.06  Aligned_cols=252  Identities=23%  Similarity=0.247  Sum_probs=126.2

Q ss_pred             ccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcccccc-CCcCCC-------CCCCCCeEEccCCcccccCcc
Q 038858          325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH-MFSKNF-------NLTKLSWLLLEDNHFVEEIPQ  396 (740)
Q Consensus       325 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-------~l~~L~~L~l~~n~~~~~~~~  396 (740)
                      ++..++|+.|++++|.+  .+|..+...   |+.|++++|.+... .+..+.       ++++|++|++++|++.+..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34445666666666666  555554422   66666666666332 111111       355566666666665555554


Q ss_pred             cc--ccCCCCCeEEccCCcCcccCCCCCCCc-----cCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCC
Q 038858          397 SL--SKCLSLEGLHLNNNNLSGKIPQWLGNL-----TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY  469 (740)
Q Consensus       397 ~~--~~l~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  469 (740)
                      .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++.+..+..|..+++|++|++++|++.+..   
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---  189 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER---  189 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH---
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch---
Confidence            43  5556666666666665543 4444444     55666666666655555555555566666666655543210   


Q ss_pred             CCCCcCCccCchhh--hccccCcEEEcccccccc---cccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccc
Q 038858          470 LSYNRLNGSIPDRI--DGLLRLSHLILAHNNLEG---EVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL  544 (740)
Q Consensus       470 l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~  544 (740)
                              ..+..+  ..+++|++|++++|.+++   .....+..+++|++|++++|.+.+..|.               
T Consensus       190 --------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------  246 (312)
T 1wwl_A          190 --------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---------------  246 (312)
T ss_dssp             --------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC---------------
T ss_pred             --------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch---------------
Confidence                    011112  444555555555555542   1112233445555555555555443321               


Q ss_pred             cceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858          545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY  624 (740)
Q Consensus       545 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  624 (740)
                                      ..+..+++|++|+|++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++
T Consensus       247 ----------------~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          247 ----------------PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             ----------------SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred             ----------------hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence                            22333455555555555555 3333333  4555555555555533 33 55555555555555


Q ss_pred             Ccccc
Q 038858          625 NNLSG  629 (740)
Q Consensus       625 N~l~~  629 (740)
                      |++++
T Consensus       306 N~l~~  310 (312)
T 1wwl_A          306 NPFLD  310 (312)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            55543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.5e-24  Score=238.59  Aligned_cols=265  Identities=24%  Similarity=0.267  Sum_probs=149.7

Q ss_pred             CCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEc
Q 038858          306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLL  385 (740)
Q Consensus       306 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  385 (740)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|+++++..    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            4666666666666 4444443  56666666666665 4554    25566666666666654332    4566666666


Q ss_pred             cCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCC
Q 038858          386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS  465 (740)
Q Consensus       386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  465 (740)
                      ++|++.+..+    .+++|++|++++|.++. +|..   +++|++|++++|.+++. |.   .+++|+.|++++|.++  
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~--  174 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT--  174 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC--
Confidence            6666654322    34566666666666653 3332   35666666666666532 21   2355666666666665  


Q ss_pred             CCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcccc
Q 038858          466 LPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL  545 (740)
Q Consensus       466 ~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L  545 (740)
                                  .+|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++.... .           +++|
T Consensus       175 ------------~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~-~-----------~~~L  223 (622)
T 3g06_A          175 ------------SLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA-L-----------PSGL  223 (622)
T ss_dssp             ------------CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC-C-----------CTTC
T ss_pred             ------------CCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC-C-----------CCCC
Confidence                        222   234566666666666653 222   23566666666666653221 1           2456


Q ss_pred             ceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858          546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       546 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      +.|++++|.+++ +|   ..+++|+.|+|++|+++.. |.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|
T Consensus       224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            666666666663 33   3345666666666666632 22   4556666666666666 45556666666666666666


Q ss_pred             cccccCCCCCc
Q 038858          626 NLSGKIPEMTT  636 (740)
Q Consensus       626 ~l~~~~~~~~~  636 (740)
                      ++++..|..+.
T Consensus       295 ~l~~~~~~~l~  305 (622)
T 3g06_A          295 PLSERTLQALR  305 (622)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCCcCHHHHH
Confidence            66665554433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.2e-24  Score=218.13  Aligned_cols=206  Identities=23%  Similarity=0.310  Sum_probs=137.7

Q ss_pred             CCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh
Q 038858          403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR  482 (740)
Q Consensus       403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  482 (740)
                      ..++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+                    
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------   73 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--------------------   73 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--------------------
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--------------------
Confidence            3556666666665 3443332  3555566665555544444555555555555555544                    


Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                                       +...+..+..+++|++|++++|.+.+..+..|..        +++|+.|++++|.+++..+..
T Consensus        74 -----------------~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~  128 (270)
T 2o6q_A           74 -----------------QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ--------LVNLAELRLDRNQLKSLPPRV  128 (270)
T ss_dssp             -----------------SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT--------CSSCCEEECCSSCCCCCCTTT
T ss_pred             -----------------CeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc--------ccCCCEEECCCCccCeeCHHH
Confidence                             4333344455555555555555555544444443        446666666666666666666


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCC
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFN  642 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  642 (740)
                      |..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            77778888888888888877667788888888888888888876666778888888888888888877777777888888


Q ss_pred             ccccCCCCCCCCCC
Q 038858          643 ESNYKGNPFLCGLP  656 (740)
Q Consensus       643 ~~~~~~Np~~C~~~  656 (740)
                      .+++++|||.|+|+
T Consensus       209 ~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          209 MLQLQENPWDCTCN  222 (270)
T ss_dssp             EEECCSSCBCCSSS
T ss_pred             EEEecCCCeeCCCc
Confidence            88899999999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=6.4e-28  Score=271.98  Aligned_cols=133  Identities=11%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             CCCCCeEEccCCcccccCccccc-cCCCCCeEEcc--C----CcCcccC-----CCCCCCccCcceeeccCCcccCCCCc
Q 038858          377 LTKLSWLLLEDNHFVEEIPQSLS-KCLSLEGLHLN--N----NNLSGKI-----PQWLGNLTGLQYIIIPENHLEGPIPV  444 (740)
Q Consensus       377 l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~--~----n~i~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~  444 (740)
                      +++|+.|.+..+.++......+. .+++|++|+++  +    +.+++..     +..+..+++|+.|++++ .+++....
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            45555555555554433333332 35556666655  2    2232110     01133455666666655 33333223


Q ss_pred             cccC-CCCccEEeccCCcCCCCCCCCCCCCcCCccCchhh-hccccCcEEEcccccccccccc-cccCCCcccEEeCCCc
Q 038858          445 AFCQ-LDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPV-QLCGLNQLQLLDLSDN  521 (740)
Q Consensus       445 ~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n  521 (740)
                      .+.. +++|+.|++++|.+++             ..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~-------------~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~  516 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSD-------------LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC  516 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSH-------------HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred             HHHHhchhccEeeccCCCCcH-------------HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence            3333 5566666666665541             111122 4466666666666666433322 2334566666666666


Q ss_pred             cc
Q 038858          522 KL  523 (740)
Q Consensus       522 ~l  523 (740)
                      ++
T Consensus       517 ~~  518 (594)
T 2p1m_B          517 SV  518 (594)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=9.4e-28  Score=270.60  Aligned_cols=314  Identities=16%  Similarity=0.084  Sum_probs=181.2

Q ss_pred             CCCCCCCEEeCCCCCCCC---CCCCC--------c-cccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCC-C
Q 038858            2 GSFSSLNTLCLMDNNLTE---IVTTT--------T-QELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDC-K   68 (740)
Q Consensus         2 ~~l~~L~~L~Ls~n~i~~---~~~~~--------~-~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~-~   68 (740)
                      .++++|++|+++++....   ..|..        + .....+++|++|++++|.+.+..+..+...+++|++|++++| .
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            358899999999976321   11100        0 113468999999999999988888888744999999999999 4


Q ss_pred             CCCcCCCCCCCCCCCCCEEecCCCccccCccch---HHHhccCCCCcEEEccCcc--cccCCCCCCccccCCCCCCCEEE
Q 038858           69 VNGVVRSQGFPHFKSLEYLDMNTACIALNASFL---QIIGASMPFLKYLSLSYFT--FGTNSSRILDQGLCPLVHLQELH  143 (740)
Q Consensus        69 ~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~---~~l~~~l~~L~~L~Ls~~~--~~~~~~~~~~~~l~~l~~L~~L~  143 (740)
                      +.+......+.++++|++|++++|.+  .+...   ..+...+++|++|++++|.  +.   .......+..+++|++|+
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~i--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~l~~~~~~L~~L~  217 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESDV--DDVSGHWLSHFPDTYTSLVSLNISCLASEVS---FSALERLVTRCPNLKSLK  217 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCEE--ECCCGGGGGGSCTTCCCCCEEECTTCCSCCC---HHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCcc--CCcchHHHHHHhhcCCcCcEEEecccCCcCC---HHHHHHHHHhCCCCcEEe
Confidence            43211112234789999999999953  33332   2333348899999999886  11   111111234579999999


Q ss_pred             ccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCC
Q 038858          144 MANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTF  223 (740)
Q Consensus       144 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  223 (740)
                      +++|...+.++..+..+++|++|+++.+...           +..+.+.+...    ....+++|+.|.- ........+
T Consensus       218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------~~~~~~~~l~~----~l~~~~~L~~Ls~-~~~~~~~~l  281 (594)
T 2p1m_B          218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------VRPDVYSGLSV----ALSGCKELRCLSG-FWDAVPAYL  281 (594)
T ss_dssp             CCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------CCHHHHHHHHH----HHHTCTTCCEEEC-CBTCCGGGG
T ss_pred             cCCCCcHHHHHHHHhcCCcceEcccccccCc-----------cchhhHHHHHH----HHhcCCCcccccC-CcccchhhH
Confidence            9999433347778889999999998766421           00111111110    1133345666621 111112234


Q ss_pred             chhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCC-CCCCCCCcCEEeccC---------CcCc
Q 038858          224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRL-PIHSHKSLRLLDVSN---------NNFQ  293 (740)
Q Consensus       224 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~---------n~l~  293 (740)
                      +..+..+++|+.|++++|.+++.....+...+++|++|++++| +.+.... ....+++|++|++.+         +.++
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~  360 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT  360 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence            4444456677777777777655444444456666777766665 2211111 111355666666632         2333


Q ss_pred             ccCChhHhhcCCCCcEEEccCCcCcccCCcccc-CCCCCcEEEee
Q 038858          294 GRIPAEIGDILPSLSSFNISMNALDGSIPSSFG-NMNFLQILDLS  337 (740)
Q Consensus       294 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~  337 (740)
                      +.....+...+++|++|.+..+.+++..+..+. .+++|+.|+++
T Consensus       361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            222223333355666665555555543333333 35566666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=6.8e-27  Score=239.84  Aligned_cols=249  Identities=22%  Similarity=0.266  Sum_probs=173.6

Q ss_pred             CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcc-cCCCCCC-------CccCcceeeccCCcccCCCCccc-
Q 038858          376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG-KIPQWLG-------NLTGLQYIIIPENHLEGPIPVAF-  446 (740)
Q Consensus       376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~-  446 (740)
                      ..++|+.|++++|.+  .+|..+...  |++|++++|.+.. ..+..+.       ++++|++|++++|.+++..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344556666666665  334433332  5566666665532 2332222       45666777777776666555554 


Q ss_pred             -cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcc-----ccCcEEEcccccccccccccccCCCcccEEeCCC
Q 038858          447 -CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL-----LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD  520 (740)
Q Consensus       447 -~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  520 (740)
                       ..+++|++|++++|++++              .|..+..+     ++|++|++++|.+++..+..++.+++|++|++++
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  182 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWAT--------------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD  182 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSS--------------SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred             HhcCCCccEEEccCCCCcc--------------hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC
Confidence             667777777777776652              24445555     7788888888887777777788888888888888


Q ss_pred             ccccCCC--CCcccccccchhhhccccceEEccCccccc---cCCcCccCCCcCcEEeCcCCcCCCccc-hhccCcCCCc
Q 038858          521 NKLHGLI--PPCFDNTALHERRVLSLLSGIDLSCNKLIG---DIPPQIGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIE  594 (740)
Q Consensus       521 n~l~~~~--~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  594 (740)
                      |++.+..  +..+.      ...+++|++|++++|++++   .....+..+++|++|+|++|++++..| ..+..+++|+
T Consensus       183 N~l~~~~~~~~~~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          183 NPELGERGLISALC------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             CTTCHHHHHHHHSC------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             CCcCcchHHHHHHH------hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            8765431  11110      0125688888888888873   222345678999999999999998774 5677889999


Q ss_pred             EEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCC
Q 038858          595 SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLC  653 (740)
Q Consensus       595 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  653 (740)
                      +|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.+++++||+..
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999999999 7777665  8999999999999987 66 7889999999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=4.4e-24  Score=215.79  Aligned_cols=208  Identities=25%  Similarity=0.238  Sum_probs=139.7

Q ss_pred             cccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCc
Q 038858          398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG  477 (740)
Q Consensus       398 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~  477 (740)
                      +..++++++++++++.++ .+|..+.  +.++.|++++|.+++..+..|..+++|+.|++++|.+               
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l---------------   67 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---------------   67 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---------------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc---------------
Confidence            445556666666666665 3333332  4555555555555544445555555555555555544               


Q ss_pred             cCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc
Q 038858          478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG  557 (740)
Q Consensus       478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  557 (740)
                                            ++..+.  ..+++|++|++++|.+. .+|..+..        +++|+.|++++|++++
T Consensus        68 ----------------------~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~--------l~~L~~L~l~~N~l~~  114 (290)
T 1p9a_G           68 ----------------------TKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT--------LPALTVLDVSFNRLTS  114 (290)
T ss_dssp             ----------------------CEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT--------CTTCCEEECCSSCCCC
T ss_pred             ----------------------CcccCC--CCCCcCCEEECCCCcCC-cCchhhcc--------CCCCCEEECCCCcCcc
Confidence                                  422221  45556666666666665 23333333        4567777777777776


Q ss_pred             cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCcc
Q 038858          558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQ  637 (740)
Q Consensus       558 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  637 (740)
                      ..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++. +|..+..
T Consensus       115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~  193 (290)
T 1p9a_G          115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFG  193 (290)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcc
Confidence            666778888888888888888887777778888888888888888886666667788888888888888884 4544566


Q ss_pred             ccCCCccccCCCCCCCCCCC
Q 038858          638 FATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       638 ~~~l~~~~~~~Np~~C~~~~  657 (740)
                      ...++.+++.+|||.|+|+.
T Consensus       194 ~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             TCCCSEEECCSCCBCCSGGG
T ss_pred             cccCCeEEeCCCCccCcCcc
Confidence            77888999999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=6.4e-25  Score=238.83  Aligned_cols=235  Identities=21%  Similarity=0.179  Sum_probs=173.3

Q ss_pred             ccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeec
Q 038858          354 VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIII  433 (740)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  433 (740)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..     ..++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            366677777776666666666667777777777777665544  666777777777777766332     2267777777


Q ss_pred             cCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccccccc-CCCc
Q 038858          434 PENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLC-GLNQ  512 (740)
Q Consensus       434 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~  512 (740)
                      ++|.+++..+.   .+++|+.|++++|.+++             ..|..+..+++|+.|++++|.+++..|..+. .+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~  170 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCS-------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCC-------------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence            77777655443   34677888888777763             3344567778888888888888877776665 6788


Q ss_pred             ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858          513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH  592 (740)
Q Consensus       513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  592 (740)
                      |+.|++++|.+++..+...          +++|+.|++++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++
T Consensus       171 L~~L~Ls~N~l~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~  238 (487)
T 3oja_A          171 LEHLNLQYNFIYDVKGQVV----------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQN  238 (487)
T ss_dssp             CCEEECTTSCCCEEECCCC----------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             ccEEecCCCcccccccccc----------CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence            8888888888876533221          5688999999999886544 58889999999999999995 6777889999


Q ss_pred             CcEEECCCCcCC-ccCchhhhcCCCCCEEEcc
Q 038858          593 IESLDLYHNKLN-GKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       593 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~  623 (740)
                      |+.|++++|++. +.+|..+..++.|+.++++
T Consensus       239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            999999999998 6677788888888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=6e-23  Score=206.79  Aligned_cols=212  Identities=24%  Similarity=0.245  Sum_probs=118.0

Q ss_pred             cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeecc
Q 038858          355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP  434 (740)
Q Consensus       355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  434 (740)
                      +|++|++++|.+++..+..+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555555444445555555555555555554444455555555555555555554444455555555555555


Q ss_pred             CCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCccc
Q 038858          435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQ  514 (740)
Q Consensus       435 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  514 (740)
                      +|.+.+..+..+..+++|++|++++|.+.+.            .+|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  176 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             CCCccccCchhcccCCCCCEEECcCCcccee------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence            5555544444455555555555555544310            1233444444444444444444433333333222222


Q ss_pred             EEeCCCccccCCCCCcccccccchhhhccccc-eEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCC
Q 038858          515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLS-GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI  593 (740)
Q Consensus       515 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  593 (740)
                                                   .+. .|++++|.+.+..+..+.. .+|+.|++++|++++..+..|..+++|
T Consensus       177 -----------------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          177 -----------------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             -----------------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             -----------------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence                                         122 5666666666554444443 478888888888887777778888889


Q ss_pred             cEEECCCCcCCccCc
Q 038858          594 ESLDLYHNKLNGKIP  608 (740)
Q Consensus       594 ~~L~Ls~N~l~~~~~  608 (740)
                      +.|++++|++.+..|
T Consensus       227 ~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          227 QKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CEEECCSSCBCCCTT
T ss_pred             cEEEccCCcccccCC
Confidence            999999998885543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.6e-22  Score=202.68  Aligned_cols=204  Identities=24%  Similarity=0.302  Sum_probs=138.8

Q ss_pred             CCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEec
Q 038858          378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGI  457 (740)
Q Consensus       378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  457 (740)
                      ...+.++++++.++. +|..+.  +++++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            457899999999885 454443  68999999999999777778999999999999999999777777888999999999


Q ss_pred             cCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858          458 SDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH  537 (740)
Q Consensus       458 ~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  537 (740)
                      ++|++.+             ..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.        
T Consensus        93 ~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------  151 (270)
T 2o6q_A           93 TDNKLQA-------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG--------  151 (270)
T ss_dssp             CSSCCCC-------------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------
T ss_pred             CCCcCCc-------------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--------
Confidence            9888762             2233456667777777777777666666666666666666666666544333        


Q ss_pred             hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858          538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL  617 (740)
Q Consensus       538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  617 (740)
                                              .|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..+..+++|
T Consensus       152 ------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          152 ------------------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             ------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ------------------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence                                    34445555555555555554444445555555555555555554444445555555


Q ss_pred             CEEEccCCcccc
Q 038858          618 VVFSVAYNNLSG  629 (740)
Q Consensus       618 ~~L~l~~N~l~~  629 (740)
                      +.|++++|++..
T Consensus       208 ~~L~l~~N~~~c  219 (270)
T 2o6q_A          208 KMLQLQENPWDC  219 (270)
T ss_dssp             CEEECCSSCBCC
T ss_pred             CEEEecCCCeeC
Confidence            555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.6e-22  Score=204.26  Aligned_cols=203  Identities=24%  Similarity=0.161  Sum_probs=147.2

Q ss_pred             CCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCcc
Q 038858          374 NFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ  453 (740)
Q Consensus       374 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  453 (740)
                      +..++++++++++++.+... |..+.  +.+++|++++|.+++..+..+..+++|+.|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            45788999999999999755 43343  689999999999998878889999999999999999986543  26788899


Q ss_pred             EEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccc
Q 038858          454 ILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDN  533 (740)
Q Consensus       454 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  533 (740)
                      +|++++|++.              .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..
T Consensus        81 ~L~Ls~N~l~--------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           81 TLDLSHNQLQ--------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             EEECCSSCCS--------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             EEECCCCcCC--------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence            9999998886              45556677778888888888887666677777777777777777777655555544


Q ss_pred             cccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       534 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                              +++|+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+...++|+.|+|++|++.
T Consensus       147 --------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          147 --------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             --------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             --------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence                    446666666666666544445555666666666666665 34444445556666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.1e-23  Score=205.91  Aligned_cols=164  Identities=27%  Similarity=0.300  Sum_probs=80.4

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..        +++|++|++++|.+++..+..
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~  128 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDK--------LTNLKELVLVENQLQSLPDGV  128 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCCCCTTT
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcC--------CcCCCEEECCCCcCCccCHHH
Confidence            33444444444444444421  23444444455555544444444433333        334555555555554444444


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCC
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFN  642 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  642 (740)
                      |..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            45555555555555555544444455555555555555555544444445555555555555555555444445555555


Q ss_pred             ccccCCCCCCCCCC
Q 038858          643 ESNYKGNPFLCGLP  656 (740)
Q Consensus       643 ~~~~~~Np~~C~~~  656 (740)
                      .+++++|||.|+|+
T Consensus       209 ~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          209 YIWLHDNPWDCTCP  222 (272)
T ss_dssp             EEECCSSCBCCCTT
T ss_pred             EEEccCCCccccCc
Confidence            55555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=2.5e-22  Score=198.93  Aligned_cols=159  Identities=25%  Similarity=0.311  Sum_probs=83.4

Q ss_pred             cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT  567 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  567 (740)
                      +++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|..        +++|+.|++++|.+++..+..|..++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~  107 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--------LTELGTLGLANNQLASLPLGVFDHLT  107 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc--------CCcCCEEECCCCcccccChhHhcccC
Confidence            4445555555554444444555555555555555555444444433        34555555555555544444455555


Q ss_pred             cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccC
Q 038858          568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYK  647 (740)
Q Consensus       568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~  647 (740)
                      +|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.++++
T Consensus       108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            55555555555555444445555555555555555554444445555555555555555555555445555555555555


Q ss_pred             CCCCCCC
Q 038858          648 GNPFLCG  654 (740)
Q Consensus       648 ~Np~~C~  654 (740)
                      +|||.|+
T Consensus       188 ~N~~~c~  194 (251)
T 3m19_A          188 GNQFDCS  194 (251)
T ss_dssp             SCCBCTT
T ss_pred             CCceeCC
Confidence            5555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=7.5e-23  Score=205.25  Aligned_cols=209  Identities=24%  Similarity=0.302  Sum_probs=156.2

Q ss_pred             cccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCc
Q 038858          398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG  477 (740)
Q Consensus       398 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~  477 (740)
                      ...+++|+.|++++|.+.. . ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++             
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-------------   99 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-------------   99 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-------------
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-------------
Confidence            3455666666666666642 2 2355666677777777766643  356667777777777776652             


Q ss_pred             cCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc
Q 038858          478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG  557 (740)
Q Consensus       478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  557 (740)
                      ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..        +++|+.|++++|++++
T Consensus       100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A          100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------LTNLTELDLSYNQLQS  171 (272)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCC
T ss_pred             cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------CccCCEEECCCCCcCc
Confidence            23344566777777777777777666667778888888888888887776666655        5688888888888887


Q ss_pred             cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCcc
Q 038858          558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQ  637 (740)
Q Consensus       558 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  637 (740)
                      ..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.+.       ++.|+.++++.|.++|.+|..++.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence            7777788899999999999999988888899999999999999998744       456888999999999999886554


Q ss_pred             c
Q 038858          638 F  638 (740)
Q Consensus       638 ~  638 (740)
                      +
T Consensus       245 ~  245 (272)
T 3rfs_A          245 V  245 (272)
T ss_dssp             B
T ss_pred             c
Confidence            4

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=3.6e-23  Score=216.94  Aligned_cols=267  Identities=18%  Similarity=0.160  Sum_probs=125.6

Q ss_pred             EEccCCcCcccCCccccCCCCCcEEEeecccCCCccCh----hhhhcCc-cCcEEEcCCccccccCCcCCCCC-----CC
Q 038858          310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE----HLAIGCV-NLEILVLSNNNLEGHMFSKNFNL-----TK  379 (740)
Q Consensus       310 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~  379 (740)
                      ++++.|.+++.+|..+...++|++|++++|.++ ..+.    ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            455666666555554444555666666666665 3332    2223344 45555555555544333333221     44


Q ss_pred             CCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCc-cCcceeeccCCcccCCCCccc----cC-CCCcc
Q 038858          380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL-TGLQYIIIPENHLEGPIPVAF----CQ-LDSLQ  453 (740)
Q Consensus       380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~  453 (740)
                      |++|++++|++.+..+..+...                    +..+ ++|++|++++|.+++..+..+    .. .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            4444444444443332211111                    1112 344444444444443333222    22 23555


Q ss_pred             EEeccCCcCCCCCCCCCCCCcCCccCchhhhccc-cCcEEEccccccccccccc----ccCC-CcccEEeCCCccccCCC
Q 038858          454 ILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVQ----LCGL-NQLQLLDLSDNKLHGLI  527 (740)
Q Consensus       454 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~  527 (740)
                      +|++++|.+++..+         ..++..+..++ +|++|++++|.+++..+..    +..+ ++|++|++++|.+.+..
T Consensus       142 ~L~Ls~N~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          142 SLNLRGNDLGIKSS---------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             EEECTTSCGGGSCH---------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             EEEccCCcCCHHHH---------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence            55555555442110         02223333333 5666666666555444332    2233 36666666666655422


Q ss_pred             CCcccccccchhhh-ccccceEEccCccccccCC----cCccCCCcCcEEeCcCCcCCCcc-------chhccCcCCCcE
Q 038858          528 PPCFDNTALHERRV-LSLLSGIDLSCNKLIGDIP----PQIGNLTRIQTLNLSHNNLTGTI-------LSTFTNLRHIES  595 (740)
Q Consensus       528 ~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~  595 (740)
                      ...+..    .+.. .++|+.|++++|.+.+..+    ..+..+++|++|+|++|.+.+..       +..+..+++|+.
T Consensus       213 ~~~l~~----~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~  288 (362)
T 3goz_A          213 YAELAY----IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL  288 (362)
T ss_dssp             HHHHHH----HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred             HHHHHH----HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence            211111    0111 1356666666666554322    23455666777777777644322       234566677777


Q ss_pred             EECCCCcCCccCchh
Q 038858          596 LDLYHNKLNGKIPCQ  610 (740)
Q Consensus       596 L~Ls~N~l~~~~~~~  610 (740)
                      ||+++|++....+..
T Consensus       289 LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          289 VDKNGKEIHPSHSIP  303 (362)
T ss_dssp             ECTTSCBCCGGGCHH
T ss_pred             EecCCCcCCCcchHH
Confidence            777777776554433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.8e-21  Score=198.69  Aligned_cols=194  Identities=20%  Similarity=0.341  Sum_probs=114.2

Q ss_pred             cCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccC
Q 038858          400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSI  479 (740)
Q Consensus       400 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  479 (740)
                      .+++|++|++++|.+.. ++ .+..+++|+.|++++|.+++..+  +..+++|++|++++|++.              .+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~--------------~~  100 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK--------------NV  100 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS--------------CC
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC--------------Cc
Confidence            34445555555554442 22 34445555555555555543322  555555555555555554              11


Q ss_pred             chhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccC
Q 038858          480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDI  559 (740)
Q Consensus       480 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  559 (740)
                      + .+..+++|++|++++|.+++..  .+..+++|++|++++|.+++..+  +..        +++|+.|++++|.+++..
T Consensus       101 ~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~~~  167 (308)
T 1h6u_A          101 S-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG--------LTNLQYLSIGNAQVSDLT  167 (308)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--------CTTCCEEECCSSCCCCCG
T ss_pred             h-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC--------CCCccEEEccCCcCCCCh
Confidence            1 3455556666666666655332  25566666666666666654332  222        456777777777666432


Q ss_pred             CcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          560 PPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       560 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      +  +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++.
T Consensus       168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            2  6777778888888877776443  7777788888888888775443  67777888888888877653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=8e-21  Score=188.04  Aligned_cols=140  Identities=26%  Similarity=0.317  Sum_probs=86.3

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      |.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..        +++|+.|++++|.+++..+..
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~  126 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH--------LTQLDKLYLGGNQLKSLPSGV  126 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTT
T ss_pred             hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc--------cCCCCEEEcCCCcCCCcChhH
Confidence            334444444444444444444444555555555555555555444444443        345666666666666555555


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      |..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.
T Consensus       127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66677777777777777766666677777777777777777766666677777777777777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.7e-21  Score=190.05  Aligned_cols=79  Identities=16%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             cccc-eEEccCccccccCCcCccCCCcCcEEeCcCCc-CCCccchhccCc-CCCcEEECCCCcCCccCchhhhcCCCCCE
Q 038858          543 SLLS-GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNN-LTGTILSTFTNL-RHIESLDLYHNKLNGKIPCQLVELNALVV  619 (740)
Q Consensus       543 ~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  619 (740)
                      ++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|++|++++|++++. |..  .+++|+.
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~  230 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKE  230 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSE
T ss_pred             hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCce
Confidence            3444 4444444444332333333 566666666663 665555566666 6666666666666633 322  4556666


Q ss_pred             EEccCC
Q 038858          620 FSVAYN  625 (740)
Q Consensus       620 L~l~~N  625 (740)
                      |+++++
T Consensus       231 L~l~~~  236 (239)
T 2xwt_C          231 LIARNT  236 (239)
T ss_dssp             EECTTC
T ss_pred             eeccCc
Confidence            666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2e-21  Score=191.00  Aligned_cols=197  Identities=17%  Similarity=0.163  Sum_probs=151.4

Q ss_pred             CcceeeccCCcccCCCCccccCCCCccEEeccCCc-CCCCCCCCCCCCcCCccCchhhhccccCcEEEccc-cccccccc
Q 038858          427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNN-ISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAH-NNLEGEVP  504 (740)
Q Consensus       427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~  504 (740)
                      ++++|++++|++++..+..|..+++|++|++++|+ +++             ..+..|.++++|++|++++ |.+++..+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-------------i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-------------LESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-------------ECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-------------eCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            67777777777776666667777777777777775 541             2233566777778888877 77776666


Q ss_pred             ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccc---eEEccCc-cccccCCcCccCCCcCc-EEeCcCCcC
Q 038858          505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLS---GIDLSCN-KLIGDIPPQIGNLTRIQ-TLNLSHNNL  579 (740)
Q Consensus       505 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l  579 (740)
                      ..|.++++|++|++++|.+++ .|. +..        +++|+   .|++++| .+.+..+..|..+++|+ +|++++|++
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~--------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTK--------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTT--------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-ccc--------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            778888888888888888876 333 443        44565   9999999 88877777899999999 999999999


Q ss_pred             CCccchhccCcCCCcEEECCCCc-CCccCchhhhcC-CCCCEEEccCCcccccCCCCCccccCCCccccCCCC
Q 038858          580 TGTILSTFTNLRHIESLDLYHNK-LNGKIPCQLVEL-NALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNP  650 (740)
Q Consensus       580 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np  650 (740)
                      +...+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++..+.   .++.++.+.+.+++
T Consensus       169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            9665666766 899999999995 987777889999 9999999999999976554   56777888777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=4.5e-23  Score=216.15  Aligned_cols=258  Identities=16%  Similarity=0.149  Sum_probs=166.3

Q ss_pred             EcCCccccccCCcCCCCCCCCCeEEccCCcccccCc----cccccCC-CCCeEEccCCcCcccCCCCCCCc-----cCcc
Q 038858          360 VLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP----QSLSKCL-SLEGLHLNNNNLSGKIPQWLGNL-----TGLQ  429 (740)
Q Consensus       360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l-----~~L~  429 (740)
                      .++.|.+++..+..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+++..+..+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            344444444443333334445566666665554444    4555666 67777777776665444444443     7777


Q ss_pred             eeeccCCcccCCCCccc----cCC-CCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhc-cccCcEEEcccccccccc
Q 038858          430 YIIIPENHLEGPIPVAF----CQL-DSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDG-LLRLSHLILAHNNLEGEV  503 (740)
Q Consensus       430 ~L~l~~n~~~~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~  503 (740)
                      +|++++|.+++..+..+    ..+ ++|++|++++|++++..+.         .+...+.. .++|++|++++|.+++..
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS---------EFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH---------HHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH---------HHHHHHHhCCCceeEEEccCCcCCHHH
Confidence            78888887776655533    344 7899999999988632111         11122333 368999999999988544


Q ss_pred             c----ccccCCC-cccEEeCCCccccCCCCCcccccccchhhhc-cccceEEccCcccccc----CCcCccC-CCcCcEE
Q 038858          504 P----VQLCGLN-QLQLLDLSDNKLHGLIPPCFDNTALHERRVL-SLLSGIDLSCNKLIGD----IPPQIGN-LTRIQTL  572 (740)
Q Consensus       504 ~----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L  572 (740)
                      .    ..+...+ +|++|++++|++++..+..+..    .+... ++|+.|++++|.+.+.    ++..+.. .++|++|
T Consensus       155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L  230 (362)
T 3goz_A          155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAK----FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL  230 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH----HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred             HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH----HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence            3    3345555 8999999999988766544432    12223 4899999999998853    3334444 3589999


Q ss_pred             eCcCCcCCCccc----hhccCcCCCcEEECCCCcCCccCc-------hhhhcCCCCCEEEccCCccccc
Q 038858          573 NLSHNNLTGTIL----STFTNLRHIESLDLYHNKLNGKIP-------CQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       573 ~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      +|++|.+++..+    ..+..+++|++|++++|.+.+..+       ..+..+++|+.||+++|++...
T Consensus       231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            999998887554    345677889999999998553333       3456677888899999988765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=1.9e-21  Score=187.86  Aligned_cols=175  Identities=23%  Similarity=0.299  Sum_probs=136.0

Q ss_pred             cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858          490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI  569 (740)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  569 (740)
                      +.++++++.++ .+|..+.  ++++.|++++|.+.+..+..|..        +++|+.|++++|.+++..|..|..+++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            45666666665 3333332  56777777777777666666655        5678888888888887778888888899


Q ss_pred             cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCC
Q 038858          570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGN  649 (740)
Q Consensus       570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~N  649 (740)
                      ++|+|++|+++...+..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++|
T Consensus        83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            99999999998777777888999999999999998888888888999999999999999888888888889999999999


Q ss_pred             CCCCCCCCC----------------CCCCCCcccccCCCCCC
Q 038858          650 PFLCGLPLP----------------ICRSPVTMLEASTSNEG  675 (740)
Q Consensus       650 p~~C~~~~~----------------~c~~~~~~~~~~~~~~~  675 (740)
                      ||.|+|++.                .|..|....+.......
T Consensus       163 ~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~  204 (220)
T 2v9t_B          163 PFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIK  204 (220)
T ss_dssp             CEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSC
T ss_pred             CcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCC
Confidence            999999641                47777666665544443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1e-22  Score=211.80  Aligned_cols=255  Identities=18%  Similarity=0.202  Sum_probs=138.4

Q ss_pred             CCcEEEeecccCCCccChhhhhcC--ccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc-CccccccCCCCCe
Q 038858          330 FLQILDLSNNHLTGEIPEHLAIGC--VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE-IPQSLSKCLSLEG  406 (740)
Q Consensus       330 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~  406 (740)
                      .++.++++++.+..    ..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            46677777776551    222233  5677777777766654433 33456666666666655433 4444555555555


Q ss_pred             EEccCCcCcccCCCCCCCccCcceeeccCC-cccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhc
Q 038858          407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPEN-HLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDG  485 (740)
Q Consensus       407 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~  485 (740)
                      |++++|.+++..+..+..+++|++|++++| .+++.                                    .++..+..
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~------------------------------------~l~~~~~~  166 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF------------------------------------ALQTLLSS  166 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH------------------------------------HHHHHHHH
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH------------------------------------HHHHHHhc
Confidence            555555554433334444444444444444 23321                                    12333444


Q ss_pred             cccCcEEEcccc-ccccc-ccccccCCC-cccEEeCCCcc--cc-CCCCCcccccccchhhhccccceEEccCcc-cccc
Q 038858          486 LLRLSHLILAHN-NLEGE-VPVQLCGLN-QLQLLDLSDNK--LH-GLIPPCFDNTALHERRVLSLLSGIDLSCNK-LIGD  558 (740)
Q Consensus       486 l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~  558 (740)
                      +++|++|++++| .+++. .+..+..++ +|++|++++|.  ++ +..+..        ...+++|+.|++++|. +++.
T Consensus       167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~--------~~~~~~L~~L~l~~~~~l~~~  238 (336)
T 2ast_B          167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--------VRRCPNLVHLDLSDSVMLKND  238 (336)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--------HHHCTTCSEEECTTCTTCCGG
T ss_pred             CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH--------HhhCCCCCEEeCCCCCcCCHH
Confidence            555555555555 44432 233444555 55555555552  22 111111        1224556666666666 4445


Q ss_pred             CCcCccCCCcCcEEeCcCCc-CCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCc
Q 038858          559 IPPQIGNLTRIQTLNLSHNN-LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT  636 (740)
Q Consensus       559 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  636 (740)
                      .+..+..+++|++|++++|. +.......+.++++|++|++++| ++...-..+.  ..++.|++++|++++..|..++
T Consensus       239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred             HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence            55567777888888888884 44333346778888888888888 4432222222  2355566888888888777543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=5.5e-23  Score=217.90  Aligned_cols=193  Identities=16%  Similarity=0.237  Sum_probs=122.9

Q ss_pred             CCccCcceeeccCCcccC----CCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcc---------ccC
Q 038858          423 GNLTGLQYIIIPENHLEG----PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL---------LRL  489 (740)
Q Consensus       423 ~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l---------~~L  489 (740)
                      ..+++|++|++++|.+.+    .++..+..+++|++|++++|.+++..+.         .++..+..+         ++|
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~---------~l~~~l~~l~~~~~~~~~~~L  161 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA---------KIARALQELAVNKKAKNAPPL  161 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH---------HHHHHHHHHHHHHHHHTCCCC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH---------HHHHHHHHHhhhhhcccCCCC
Confidence            344555555555555554    2334455566666666666655311100         122223333         667


Q ss_pred             cEEEccccccc-cccc---ccccCCCcccEEeCCCccccC-----CCCCcccccccchhhhccccceEEccCcccc----
Q 038858          490 SHLILAHNNLE-GEVP---VQLCGLNQLQLLDLSDNKLHG-----LIPPCFDNTALHERRVLSLLSGIDLSCNKLI----  556 (740)
Q Consensus       490 ~~L~L~~n~l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~----  556 (740)
                      ++|++++|.++ ...+   ..+..+++|++|++++|.+..     ..+..+.        .+++|+.|++++|.++    
T Consensus       162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--------~~~~L~~L~Ls~n~l~~~g~  233 (386)
T 2ca6_A          162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--------YCQELKVLDLQDNTFTHLGS  233 (386)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--------GCTTCCEEECCSSCCHHHHH
T ss_pred             cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh--------cCCCccEEECcCCCCCcHHH
Confidence            77777777665 2223   345566677777777776652     1111222        2567777777777774    


Q ss_pred             ccCCcCccCCCcCcEEeCcCCcCCCc----cchhccC--cCCCcEEECCCCcCCc----cCchhh-hcCCCCCEEEccCC
Q 038858          557 GDIPPQIGNLTRIQTLNLSHNNLTGT----ILSTFTN--LRHIESLDLYHNKLNG----KIPCQL-VELNALVVFSVAYN  625 (740)
Q Consensus       557 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N  625 (740)
                      ..+|..+..+++|++|+|++|.+++.    ++..+..  +++|++|+|++|++++    .+|..+ ..+++|++|++++|
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            45666778888999999999998865    4566643  8899999999999987    477776 56899999999999


Q ss_pred             cccccCC
Q 038858          626 NLSGKIP  632 (740)
Q Consensus       626 ~l~~~~~  632 (740)
                      ++++..+
T Consensus       314 ~l~~~~~  320 (386)
T 2ca6_A          314 RFSEEDD  320 (386)
T ss_dssp             BSCTTSH
T ss_pred             cCCcchh
Confidence            9987653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=7.9e-21  Score=194.56  Aligned_cols=203  Identities=18%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             ccCcEEEcCCccccccCCcCC--CCCCCCCeEEccCCcccccCc----cccccCCCCCeEEccCCcCcccCCCCCCCccC
Q 038858          354 VNLEILVLSNNNLEGHMFSKN--FNLTKLSWLLLEDNHFVEEIP----QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTG  427 (740)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~  427 (740)
                      ++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445555555555555444444  455666666666666554322    22334566666666666665555555666666


Q ss_pred             cceeeccCCcccCC---C-CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCch----hhhccccCcEEEcccccc
Q 038858          428 LQYIIIPENHLEGP---I-PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD----RIDGLLRLSHLILAHNNL  499 (740)
Q Consensus       428 L~~L~l~~n~~~~~---~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l  499 (740)
                      |++|++++|++.+.   . +..+..+++|++|++++|+++              .++.    .+..+++|++|++++|.+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------------~l~~~~~~l~~~l~~L~~L~Ls~N~l  236 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--------------TPTGVCAALAAAGVQPHSLDLSHNSL  236 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--------------CHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--------------chHHHHHHHHhcCCCCCEEECCCCCC
Confidence            66666666654321   1 112244555666666555553              1111    123444444455544444


Q ss_pred             cccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcC
Q 038858          500 EGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNL  579 (740)
Q Consensus       500 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  579 (740)
                      ++..|..+..+.                             .+++|+.|++++|+++ .+|..+.  ++|++|+|++|++
T Consensus       237 ~~~~p~~~~~~~-----------------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          237 RATVNPSAPRCM-----------------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             CCCCCSCCSSCC-----------------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred             CccchhhHHhcc-----------------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence            443333333321                             0135555555555555 3344432  5667777777766


Q ss_pred             CCccchhccCcCCCcEEECCCCcCC
Q 038858          580 TGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       580 ~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      ++. | .+..+++|+.|++++|+++
T Consensus       285 ~~~-~-~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          285 NRA-P-QPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSC-C-CTTSCCCCSCEECSSTTTS
T ss_pred             CCC-c-hhhhCCCccEEECcCCCCC
Confidence            653 2 2556677777777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.6e-22  Score=214.31  Aligned_cols=248  Identities=16%  Similarity=0.191  Sum_probs=184.0

Q ss_pred             ccccccCCCCCeEEccCCcCccc----CCCCCCCccCcceeeccCCcc---cCCCCcc-------ccCCCCccEEeccCC
Q 038858          395 PQSLSKCLSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHL---EGPIPVA-------FCQLDSLQILGISDN  460 (740)
Q Consensus       395 ~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~---~~~~~~~-------~~~~~~L~~L~l~~n  460 (740)
                      +..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+   .+..|..       +..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            34455666677777777766543    223455667777777777533   2333433       478899999999999


Q ss_pred             cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccc----cCC---------CcccEEeCCCccccCCC
Q 038858          461 NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQL----CGL---------NQLQLLDLSDNKLHGLI  527 (740)
Q Consensus       461 ~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~~~~  527 (740)
                      .+.+.-.         ..+|..+..+++|++|++++|.++...+..+    ..+         ++|++|++++|+++...
T Consensus       105 ~l~~~~~---------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A          105 AFGPTAQ---------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CCCTTTH---------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cCCHHHH---------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            9873110         0366788999999999999999975444433    333         89999999999987322


Q ss_pred             CCcccccccchhhhccccceEEccCccccc-----cCCcCccCCCcCcEEeCcCCcCC----CccchhccCcCCCcEEEC
Q 038858          528 PPCFDNTALHERRVLSLLSGIDLSCNKLIG-----DIPPQIGNLTRIQTLNLSHNNLT----GTILSTFTNLRHIESLDL  598 (740)
Q Consensus       528 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L  598 (740)
                      ...+.    ..+..+++|+.|++++|.+..     ..+..+..+++|+.|+|++|.++    ..++..+..+++|++|+|
T Consensus       176 ~~~l~----~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          176 MKEWA----KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             HHHHH----HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             HHHHH----HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            11110    123446799999999999973     34447889999999999999996    567888999999999999


Q ss_pred             CCCcCCcc----Cchhhhc--CCCCCEEEccCCcccc----cCCCCC-ccccCCCccccCCCCCCCCC
Q 038858          599 YHNKLNGK----IPCQLVE--LNALVVFSVAYNNLSG----KIPEMT-TQFATFNESNYKGNPFLCGL  655 (740)
Q Consensus       599 s~N~l~~~----~~~~~~~--l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~~~~~~Np~~C~~  655 (740)
                      ++|++++.    ++..+..  +++|++|++++|++++    .+|..+ ..+++|+.+++++|++.+..
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            99999866    5666644  8999999999999998    366555 55799999999999998766

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=6.9e-21  Score=183.89  Aligned_cols=157  Identities=20%  Similarity=0.279  Sum_probs=124.7

Q ss_pred             cEEEcccccccccccccccCCCcccEEeCCCccccCCCC-CcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858          490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP-PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR  568 (740)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  568 (740)
                      +.+++++|.++. +|..+.  +.++.|++++|.+++..+ ..|..        +++|+.|++++|.+++..+..|..+++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            466777776663 343332  345777777777776644 23444        567888888888888777778888889


Q ss_pred             CcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCC
Q 038858          569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG  648 (740)
Q Consensus       569 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~  648 (740)
                      |++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.+++++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            99999999999888888888899999999999999888888888889999999999999988888888888999999999


Q ss_pred             CCCCCCCCC
Q 038858          649 NPFLCGLPL  657 (740)
Q Consensus       649 Np~~C~~~~  657 (740)
                      |||.|+|++
T Consensus       163 N~l~c~c~l  171 (220)
T 2v70_A          163 NPFNCNCYL  171 (220)
T ss_dssp             CCEECSGGG
T ss_pred             cCCcCCCch
Confidence            999999873

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=5.7e-22  Score=206.10  Aligned_cols=256  Identities=18%  Similarity=0.232  Sum_probs=182.5

Q ss_pred             CCCcEEEccCCcCcccCCccccCC--CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcccccc-CCcCCCCCCCCC
Q 038858          305 PSLSSFNISMNALDGSIPSSFGNM--NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH-MFSKNFNLTKLS  381 (740)
Q Consensus       305 ~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  381 (740)
                      ..++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            35899999999876   4456666  8999999999999865554 33 689999999999998765 555677899999


Q ss_pred             eEEccCCcccccCccccccCCCCCeEEccCC-cCccc-CCCCCCCccCcceeeccCC-cccCC-CCccccCCC-CccEEe
Q 038858          382 WLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN-NLSGK-IPQWLGNLTGLQYIIIPEN-HLEGP-IPVAFCQLD-SLQILG  456 (740)
Q Consensus       382 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~  456 (740)
                      +|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            9999999998888888999999999999999 67642 4555677888999999988 77643 355567778 888888


Q ss_pred             ccCCc--CCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc-ccccccccccCCCcccEEeCCCccccCCCCCcccc
Q 038858          457 ISDNN--ISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDN  533 (740)
Q Consensus       457 l~~n~--l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  533 (740)
                      +++|.  ++.            +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.  +..+..+  
T Consensus       202 l~~~~~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~--  265 (336)
T 2ast_B          202 LSGYRKNLQK------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETL--  265 (336)
T ss_dssp             CCSCGGGSCH------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGG--
T ss_pred             eCCCcccCCH------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHH--
Confidence            88884  320            2455666777888888888887 665666677777777777777774  1111111  


Q ss_pred             cccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCc-CCCcEEECCCCcCCccCchhhh
Q 038858          534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL-RHIESLDLYHNKLNGKIPCQLV  612 (740)
Q Consensus       534 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~  612 (740)
                                                 ..+..+++|+.|++++| ++.   ..+..+ .+++.|++++|++++..|..+.
T Consensus       266 ---------------------------~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          266 ---------------------------LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             ---------------------------GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             ---------------------------HHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence                                       13445566666666666 332   222222 2244555677777766665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=192.89  Aligned_cols=227  Identities=18%  Similarity=0.168  Sum_probs=126.3

Q ss_pred             CCCCEEEccCCCCcccCchHh--hhcCCCCCEEeccCCcccCCCCCCC--CCCCCcCEEeccCCcCcccCCh---hHhhc
Q 038858          231 NKLEDVDLSHIKMNGEFPNWL--LENNTKLESLSLVNDSLAGPFRLPI--HSHKSLRLLDVSNNNFQGRIPA---EIGDI  303 (740)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~~---~~~~~  303 (740)
                      ..++.+.+.++.+.......+  ...+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+.   .....
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            357788888877754322211  1234679999999998888777776  7888899999999988754441   11124


Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCc--cC-hhhhhcCccCcEEEcCCccccccCCc---CCCCC
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE--IP-EHLAIGCVNLEILVLSNNNLEGHMFS---KNFNL  377 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l  377 (740)
                      +++|++|++++|.+++..+..|..+++|++|++++|++.+.  ++ ......+++|++|++++|+++.....   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            77888888888888877777788888888888888876532  11 11112345555555555555321110   12234


Q ss_pred             CCCCeEEccCCcccccCccccccC---CCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccE
Q 038858          378 TKLSWLLLEDNHFVEEIPQSLSKC---LSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI  454 (740)
Q Consensus       378 ~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  454 (740)
                      ++|++|++++|++.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            444444444444444433333333   34444444444444 2333222  3444444444444432 11 333344444


Q ss_pred             EeccCCcC
Q 038858          455 LGISDNNI  462 (740)
Q Consensus       455 L~l~~n~l  462 (740)
                      |++++|++
T Consensus       299 L~L~~N~l  306 (310)
T 4glp_A          299 LTLDGNPF  306 (310)
T ss_dssp             EECSSTTT
T ss_pred             EECcCCCC
Confidence            44444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.3e-20  Score=190.49  Aligned_cols=208  Identities=20%  Similarity=0.326  Sum_probs=173.8

Q ss_pred             EEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcc
Q 038858          407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL  486 (740)
Q Consensus       407 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l  486 (740)
                      +.+..+.+.+..  ....+++|++|++++|.+... + .+..+++|++|++++|.+.              .++. +..+
T Consensus        24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~--------------~~~~-~~~l   84 (308)
T 1h6u_A           24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT--------------DLAP-LKNL   84 (308)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC--------------CCGG-GTTC
T ss_pred             HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC--------------CChh-HccC
Confidence            344455554322  244688999999999999854 3 6888999999999999987              4444 8889


Q ss_pred             ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..        +++|+.|++++|.+++..+  +..+
T Consensus        85 ~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~~~~--l~~l  150 (308)
T 1h6u_A           85 TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAG--------LSNLQVLYLDLNQITNISP--LAGL  150 (308)
T ss_dssp             CSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTT--------CTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             CCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchh--hcC--------CCCCCEEECCCCccCcCcc--ccCC
Confidence            9999999999999854  368899999999999999986432  433        6899999999999986543  8899


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcccc
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNY  646 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~  646 (740)
                      ++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..|  +..+++|+.+++
T Consensus       151 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l  224 (308)
T 1h6u_A          151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL  224 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred             CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence            999999999999997544  9999999999999999986544  8899999999999999998764  588899999999


Q ss_pred             CCCCCCC
Q 038858          647 KGNPFLC  653 (740)
Q Consensus       647 ~~Np~~C  653 (740)
                      ++|++.+
T Consensus       225 ~~N~i~~  231 (308)
T 1h6u_A          225 TNQTITN  231 (308)
T ss_dssp             EEEEEEC
T ss_pred             cCCeeec
Confidence            9999865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=1.3e-20  Score=197.09  Aligned_cols=161  Identities=22%  Similarity=0.205  Sum_probs=126.2

Q ss_pred             cCcEEEccccccccccccccc-CCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      .++.|++++|.+++..+..+. .+++|+.|+|++|.+++..+..|..        +++|+.|+|++|++....+..|..+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l  111 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP--------VPNLRYLDLSSNHLHTLDEFLFSDL  111 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC--------CCCCCEEECCCCcCCcCCHHHhCCC
Confidence            467777777777766666666 7788888888888887776666665        5688888888888887777778888


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhh---hcCCCCCEEEccCCcccccCCCCCccccC--C
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL---VELNALVVFSVAYNNLSGKIPEMTTQFAT--F  641 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l  641 (740)
                      ++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|   ..+++|+.|++++|++++..+..+..++.  +
T Consensus       112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred             cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence            888888998888888878888888899999999998886555444   56888999999999988766665566665  4


Q ss_pred             CccccCCCCCCCCCC
Q 038858          642 NESNYKGNPFLCGLP  656 (740)
Q Consensus       642 ~~~~~~~Np~~C~~~  656 (740)
                      +.+++.+|||.|+|+
T Consensus       192 ~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          192 NGLYLHNNPLECDCK  206 (361)
T ss_dssp             TTEECCSSCEECCHH
T ss_pred             ceEEecCCCccCCcC
Confidence            789999999999995

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=2.3e-19  Score=174.53  Aligned_cols=156  Identities=25%  Similarity=0.324  Sum_probs=127.0

Q ss_pred             CcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858          489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR  568 (740)
Q Consensus       489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  568 (740)
                      .+.++++++.++ .+|..+.  ++|+.|++++|.+.+..|..|..        +++|+.|++++|.+....+..|..+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~N~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS--------LINLKELYLGSNQLGALPVGVFDSLTQ   89 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC--------ccCCcEEECCCCCCCCcChhhcccCCC
Confidence            456777777666 3343332  67888888888887777766665        567888888888887666677888899


Q ss_pred             CcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCC
Q 038858          569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG  648 (740)
Q Consensus       569 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~  648 (740)
                      |+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++.+
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            999999999999887788889999999999999998 7788888999999999999999988878788889999999999


Q ss_pred             CCCCCCCC
Q 038858          649 NPFLCGLP  656 (740)
Q Consensus       649 Np~~C~~~  656 (740)
                      |||.|+|+
T Consensus       169 N~~~c~c~  176 (229)
T 3e6j_A          169 NPWDCECR  176 (229)
T ss_dssp             SCBCTTBG
T ss_pred             CCccCCcc
Confidence            99999986

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=5.9e-19  Score=183.78  Aligned_cols=125  Identities=16%  Similarity=0.161  Sum_probs=76.5

Q ss_pred             CEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE-EEc
Q 038858          283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI-LVL  361 (740)
Q Consensus       283 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L  361 (740)
                      ++++.++++++ .+|..+   .+++++|++++|+++...+.+|.++++|++|+|++|++.+.++...|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46777777777 677654   3467777777777776555677777777777777777765666666656666543 444


Q ss_pred             CCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccC
Q 038858          362 SNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN  411 (740)
Q Consensus       362 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  411 (740)
                      ..|++..+.+..|..+++|++|++++|++....+..+....++..+++.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~  137 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD  137 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence            44556555555555555555555555555544443343444444454433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.2e-18  Score=181.54  Aligned_cols=240  Identities=22%  Similarity=0.184  Sum_probs=129.1

Q ss_pred             cEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccC-ccccccCCCCCe-EEc
Q 038858          332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI-PQSLSKCLSLEG-LHL  409 (740)
Q Consensus       332 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~-L~l  409 (740)
                      ++++.++++++ .+|..+   .+++++|++++|+++.+....|.++++|++|++++|++.+.+ +.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666776 666554   245677777777777666666667777777777777765443 345666666654 444


Q ss_pred             cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCC-cCCCCCCCCCCCCcCCccCchhhhcc-c
Q 038858          410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDN-NISGSLPSYLSYNRLNGSIPDRIDGL-L  487 (740)
Q Consensus       410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~n~l~~~~~~~~~~l-~  487 (740)
                      +.|+++...+..|..+++|++|++++|++....+..+....++..+++.++ .+. .            ..+..|..+ .
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~------------l~~~~f~~~~~  154 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-T------------IERNSFVGLSF  154 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-E------------ECTTSSTTSBS
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-c------------ccccchhhcch
Confidence            556676666666777777777777777776555555555556666666543 332 1            111223333 2


Q ss_pred             cCcEEEcccccccccccccccCCCcccEEeCCC-ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD-NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      .++.|++++|.++...+..+ ...+|+++++++ |.+..+.+..|..        +++|+.|++++|+++...+..|.  
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~--------l~~L~~LdLs~N~l~~lp~~~~~--  223 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHG--------ASGPVILDISRTRIHSLPSYGLE--  223 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTT--------EECCSEEECTTSCCCCCCSSSCT--
T ss_pred             hhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhcc--------CcccchhhcCCCCcCccChhhhc--
Confidence            45556666666653333333 334566666653 4444333334443        34555555555555533332232  


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCC
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN  601 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  601 (740)
                       +|+.|.+.++.-....| .+..+++|+.++++++
T Consensus       224 -~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          224 -NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             -cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence             23333333222111223 2445555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=4.4e-19  Score=193.97  Aligned_cols=186  Identities=24%  Similarity=0.325  Sum_probs=100.4

Q ss_pred             CCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEecc
Q 038858          379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGIS  458 (740)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  458 (740)
                      +++.|++++|.+.+ +|..+  .++|++|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56667777666655 33333  256666666666666 344   335666666666666664 333 433  66666666


Q ss_pred             CCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccch
Q 038858          459 DNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHE  538 (740)
Q Consensus       459 ~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  538 (740)
                      +|.+++              +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.      
T Consensus       129 ~N~l~~--------------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------  179 (571)
T 3cvr_A          129 NNQLTM--------------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------  179 (571)
T ss_dssp             SSCCSC--------------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------
T ss_pred             CCcCCC--------------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------
Confidence            666552              222   34566666666666654 332   34556666666666654 222 22      


Q ss_pred             hhhccccceEEccCccccccCCcCccCCCcC-------cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhh
Q 038858          539 RRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI-------QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL  611 (740)
Q Consensus       539 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  611 (740)
                          ++|+.|++++|.|+ .+|. |..  +|       +.|+|++|.|+. +|..+..+++|+.|+|++|++++.+|..+
T Consensus       180 ----~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          180 ----ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             ----TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             ----CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence                25666666666655 3333 332  44       555665555553 34444445555555555555555555554


Q ss_pred             hc
Q 038858          612 VE  613 (740)
Q Consensus       612 ~~  613 (740)
                      ..
T Consensus       251 ~~  252 (571)
T 3cvr_A          251 SQ  252 (571)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1e-18  Score=167.61  Aligned_cols=141  Identities=26%  Similarity=0.291  Sum_probs=102.7

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..        +++|+.|++++|.+++..+..
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~  119 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------LTQLKELALNTNQLQSLPDGV  119 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTT
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------ccCCCEEEcCCCcCcccCHhH
Confidence            445555666666666665555555666667777777777766555554544        457777777777777666667


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccc
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQF  638 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  638 (740)
                      |..+++|++|++++|.+++..+..|..+++|++|++++|++.+       .++.|++|+++.|+++|.+|..++.+
T Consensus       120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            7888889999999998887777778889999999999998764       34578889999999999888765544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=3.9e-18  Score=163.47  Aligned_cols=133  Identities=26%  Similarity=0.270  Sum_probs=61.5

Q ss_pred             CCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEecc
Q 038858          379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGIS  458 (740)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  458 (740)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444443333334444455555555554443333334444555555555555444444444445555555555


Q ss_pred             CCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcccc
Q 038858          459 DNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH  524 (740)
Q Consensus       459 ~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  524 (740)
                      +|++++             ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       109 ~N~l~~-------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          109 TNQLQS-------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             SSCCCC-------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCcCcc-------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            544431             11222344444555555555544444444445555555555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3.5e-18  Score=164.85  Aligned_cols=135  Identities=24%  Similarity=0.336  Sum_probs=84.1

Q ss_pred             ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      ++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..        +++|+.|++++|.++...+..|..+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--------l~~L~~L~Ls~N~l~~l~~~~f~~l  103 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--------LRSLNSLVLYGNKITELPKSLFEGL  103 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT--------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC--------CcCCCEEECCCCcCCccCHhHccCC
Confidence            35555666666655555555666666666666666666555555554        4566666666666665544556666


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  629 (740)
                      ++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++..
T Consensus       104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            666666666666666666666666666666666666665555556666666666666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.9e-18  Score=162.73  Aligned_cols=150  Identities=19%  Similarity=0.299  Sum_probs=123.4

Q ss_pred             cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCC
Q 038858          514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI  593 (740)
Q Consensus       514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  593 (740)
                      +.+++++|.++.. |..+.          +.|++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|
T Consensus        13 ~~l~~~~~~l~~i-p~~~~----------~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGIP----------RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCSSC-CSCCC----------TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCCcC-CCCCC----------CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            5677777777643 33332          37888888888887 667888999999999999999998888889999999


Q ss_pred             cEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC----------------
Q 038858          594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL----------------  657 (740)
Q Consensus       594 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~----------------  657 (740)
                      ++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++|||.|+|++                
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~  160 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGI  160 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSC
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCC
Confidence            9999999999988888899999999999999999988888888899999999999999999963                


Q ss_pred             CCCCCCCcccccCCCCCC
Q 038858          658 PICRSPVTMLEASTSNEG  675 (740)
Q Consensus       658 ~~c~~~~~~~~~~~~~~~  675 (740)
                      ..|..|....++......
T Consensus       161 ~~C~~P~~l~g~~l~~~~  178 (193)
T 2wfh_A          161 ARCAGPGEMADKLLLTTP  178 (193)
T ss_dssp             CBEEESGGGTTCBTTTSC
T ss_pred             cCcCCchHHCCCCcccCC
Confidence            147777777666554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=4.2e-18  Score=164.28  Aligned_cols=135  Identities=23%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             cCcEEEccccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          488 RLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      .+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..        +++|+.|++++|.+++..+..|..+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l  104 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------ASGVNEILLTSNRLENVQHKMFKGL  104 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC--------CCCCCEEECCCCccCccCHhHhcCC
Confidence            34566666666665533 34666777777777777776666656655        4577777777777776666677788


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      ++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++.
T Consensus       105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            8888888888888877778888888888888888888877777888888888888888888754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=8.1e-18  Score=169.96  Aligned_cols=130  Identities=24%  Similarity=0.351  Sum_probs=81.2

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+.  ..+.        .+++|+.|++++|.+++.  ..
T Consensus        86 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~--------~l~~L~~L~l~~n~l~~~--~~  151 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV--------HLPQLESLYLGNNKITDI--TV  151 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG--------GCTTCCEEECCSSCCCCC--GG
T ss_pred             cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc--------CCCCCCEEEccCCcCCcc--hh
Confidence            33444444444444444421  1245555555555555555432  1122        245666666666666643  45


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      +..+++|+.|++++|++++..+  +..+++|++|++++|++++ ++ .+..+++|+.|++++|+++..
T Consensus       152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            6777788888888888876544  7778888888888888874 34 377788888888888887754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=4.3e-18  Score=160.51  Aligned_cols=150  Identities=23%  Similarity=0.325  Sum_probs=105.1

Q ss_pred             cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc-CccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858          514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP-QIGNLTRIQTLNLSHNNLTGTILSTFTNLRH  592 (740)
Q Consensus       514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  592 (740)
                      +.+++++|.+.. +|..+.          ..+++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~----------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP----------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC----------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCCcCc-CccCCC----------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            556666666642 333221          2566777777777655543 4677777888888888887777777777888


Q ss_pred             CcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC---------------
Q 038858          593 IESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL---------------  657 (740)
Q Consensus       593 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~---------------  657 (740)
                      |++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++++.+++++|||.|+|+.               
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~  159 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG  159 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCC
Confidence            88888888888777777777778888888888888877777777777888888888888888763               


Q ss_pred             -CCCCCCCcccccCCCCC
Q 038858          658 -PICRSPVTMLEASTSNE  674 (740)
Q Consensus       658 -~~c~~~~~~~~~~~~~~  674 (740)
                       ..|..|....+......
T Consensus       160 ~~~C~~P~~l~~~~l~~l  177 (192)
T 1w8a_A          160 AARCGAPSKVRDVQIKDL  177 (192)
T ss_dssp             GCBBCSSTTTTTSBGGGS
T ss_pred             CCCCCCChHHcCCChhhC
Confidence             15777766665544333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1e-17  Score=183.28  Aligned_cols=186  Identities=26%  Similarity=0.364  Sum_probs=109.4

Q ss_pred             CCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh
Q 038858          403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR  482 (740)
Q Consensus       403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  482 (740)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|+.|++++|.+++              +|. 
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--------------ip~-  117 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--------------LPE-  117 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--------------CCC-
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--------------cch-
Confidence            66677777766664 44433  256677777777666 333   335666777777666652              222 


Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      +..  +|+.|++++|.+++ +|.   .+++|+.|++++|.++++ |.   .        +++|+.|++++|.+++ +|. 
T Consensus       118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~--------l~~L~~L~Ls~N~L~~-lp~-  177 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML-PE---L--------PTSLEVLSVRNNQLTF-LPE-  177 (571)
T ss_dssp             CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---C--------CTTCCEEECCSSCCSC-CCC-
T ss_pred             hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC---c--------CCCcCEEECCCCCCCC-cch-
Confidence            222  66677777776664 333   456677777777766652 22   1        3466677777776664 444 


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCC-------cEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCC
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHI-------ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMT  635 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  635 (740)
                      |.  ++|+.|+|++|+|+. +|. |..  +|       +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+
T Consensus       178 l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          178 LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            44  667777777776663 333 433  55       66777777666 456556666677777777777666655544


Q ss_pred             cc
Q 038858          636 TQ  637 (740)
Q Consensus       636 ~~  637 (740)
                      ..
T Consensus       251 ~~  252 (571)
T 3cvr_A          251 SQ  252 (571)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3.6e-18  Score=172.57  Aligned_cols=191  Identities=21%  Similarity=0.309  Sum_probs=156.6

Q ss_pred             cCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccc
Q 038858          426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV  505 (740)
Q Consensus       426 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  505 (740)
                      ..+..+.+..+.+.+.  ..+..+++|+.|++++|.+.              .++ .+..+++|++|++++|.+++..+ 
T Consensus        24 ~~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~--------------~~~-~~~~l~~L~~L~L~~n~l~~~~~-   85 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK--------------SVQ-GIQYLPNVTKLFLNGNKLTDIKP-   85 (291)
T ss_dssp             HHHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC--------------CCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             HHHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcc--------------cCh-hHhcCCCCCEEEccCCccCCCcc-
Confidence            3444555666665533  23456788999999998876              333 37788999999999999986555 


Q ss_pred             cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccch
Q 038858          506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS  585 (740)
Q Consensus       506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  585 (740)
                       +..+++|+.|++++|.+.+..  .+..        +++|+.|++++|.+.+.  ..+..+++|+.|++++|++++.  .
T Consensus        86 -l~~l~~L~~L~l~~n~l~~~~--~l~~--------l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~  150 (291)
T 1h6t_A           86 -LANLKNLGWLFLDENKVKDLS--SLKD--------LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T  150 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCCGG--GGTT--------CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred             -cccCCCCCEEECCCCcCCCCh--hhcc--------CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h
Confidence             899999999999999997632  2333        68999999999999864  5688999999999999999975  6


Q ss_pred             hccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCC
Q 038858          586 TFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLC  653 (740)
Q Consensus       586 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  653 (740)
                      .+..+++|++|++++|++++..|  +..+++|+.|++++|++++. |. +..+++|+.+++++|+..+
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GG-GTTCTTCSEEEEEEEEEEC
T ss_pred             hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hh-hccCCCCCEEECcCCcccC
Confidence            89999999999999999997655  89999999999999999975 44 6888999999999998765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.8e-17  Score=183.54  Aligned_cols=131  Identities=24%  Similarity=0.332  Sum_probs=70.5

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+.        .+++|+.|+|++|.+++.  ..
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~--------~l~~L~~L~Ls~N~l~~l--~~  148 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV--------HLPQLESLYLGNNKITDI--TV  148 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGG--------GCTTCSEEECCSSCCCCC--GG
T ss_pred             hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--cccc--------CCCccCEEECCCCccCCc--hh
Confidence            33444444444444444421  1344455555555555555432  1121        144555555555555543  34


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccC
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKI  631 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  631 (740)
                      +..+++|+.|+|++|.+++..+  +..+++|+.|+|++|++++. | .+..+++|+.|++++|++++..
T Consensus       149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred             hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence            5566666666666666665444  66666666666666666643 2 4566666666666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.1e-17  Score=174.97  Aligned_cols=176  Identities=23%  Similarity=0.219  Sum_probs=116.0

Q ss_pred             CeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCcccc-CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhh
Q 038858          405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC-QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI  483 (740)
Q Consensus       405 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  483 (740)
                      +.++++++.++ .+|..+.  +.++.|++++|.+++..+..+. .+++|+.|++++|++++             ..+..|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-------------i~~~~~   84 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-------------ISSEAF   84 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-------------ECTTTT
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-------------cChhhc
Confidence            57788888776 4555443  4577788888887766666666 77777777777777652             233456


Q ss_pred             hccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCc
Q 038858          484 DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI  563 (740)
Q Consensus       484 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  563 (740)
                      .++++|++|+|++|.+++..+..|..+++|+.|+|++|++.+..+..|..        +++|+.|+|++|.+++..+..|
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~--------l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED--------MAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCSCCGGGT
T ss_pred             cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC--------cccCCEEECCCCcCCeeCHHHh
Confidence            66777777777777777666666777777777777777776666655555        4567777777777665443444


Q ss_pred             ---cCCCcCcEEeCcCCcCCCccchhccCcCC--CcEEECCCCcCC
Q 038858          564 ---GNLTRIQTLNLSHNNLTGTILSTFTNLRH--IESLDLYHNKLN  604 (740)
Q Consensus       564 ---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~  604 (740)
                         ..+++|+.|+|++|++++..+..|..++.  ++.|+|++|++.
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence               44666677777777666655566666665  366666666665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.3e-17  Score=159.18  Aligned_cols=137  Identities=24%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      ++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..|..        +++|+.|++++|.+++..+..|..+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~--------l~~L~~L~Ls~N~l~~l~~~~~~~l  111 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS--------LTQLTVLDLGTNQLTVLPSAVFDRL  111 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc--------CCCcCEEECCCCcCCccChhHhCcc
Confidence            56777777777777666777777777777777777776665555555        5678888888888876666677888


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  632 (740)
                      ++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       112 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            88888888888888 567777888888888888888886666677888888888888888876443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=1.6e-17  Score=164.99  Aligned_cols=174  Identities=21%  Similarity=0.247  Sum_probs=134.7

Q ss_pred             CccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc
Q 038858          424 NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV  503 (740)
Q Consensus       424 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  503 (740)
                      .+.++..++++++.+++..  .+..+++|+.|++++|.++              .++ .+..+++|++|++++|.+++..
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~--------------~l~-~l~~l~~L~~L~L~~N~i~~~~   79 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ--------------SLA-GMQFFTNLKELHLSHNQISDLS   79 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC--------------CCT-TGGGCTTCCEEECCSSCCCCCG
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc--------------cch-HHhhCCCCCEEECCCCccCCCh
Confidence            4566777777777776443  4667788888888888776              334 4677888888888888887655


Q ss_pred             cccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCcc
Q 038858          504 PVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI  583 (740)
Q Consensus       504 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  583 (740)
                      +  +..+++|+.|++++|++++..+...           ++|+.|++++|.+++.  +.+..+++|+.|++++|++++. 
T Consensus        80 ~--l~~l~~L~~L~L~~N~l~~l~~~~~-----------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-  143 (263)
T 1xeu_A           80 P--LKDLTKLEELSVNRNRLKNLNGIPS-----------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-  143 (263)
T ss_dssp             G--GTTCSSCCEEECCSSCCSCCTTCCC-----------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred             h--hccCCCCCEEECCCCccCCcCcccc-----------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence            4  7888888888888888876433111           4788999999988864  3588899999999999999875 


Q ss_pred             chhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCC
Q 038858          584 LSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPE  633 (740)
Q Consensus       584 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  633 (740)
                       ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++....
T Consensus       144 -~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          144 -VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             -GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             -hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence             3788899999999999999866  5688899999999999999876433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2e-17  Score=183.10  Aligned_cols=188  Identities=22%  Similarity=0.365  Sum_probs=92.6

Q ss_pred             CcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccC
Q 038858          356 LEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE  435 (740)
Q Consensus       356 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  435 (740)
                      +..+.+..+.+.+...  ...+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3344444444433221  23455555566665555433 1 34555555555555555553322  44555555555555


Q ss_pred             CcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccE
Q 038858          436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQL  515 (740)
Q Consensus       436 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  515 (740)
                      |.+.+.  ..+..+++|+.|++++|.+.              .+ ..+..+++|+.|+|++|.+++.  ..+..++    
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~--------------~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~----  153 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGIS--------------DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLT----  153 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCC--------------CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT----
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCC--------------CC-ccccCCCccCEEECCCCccCCc--hhhcccC----
Confidence            555432  13444555555555555443              11 1234444444444444444432  2344444    


Q ss_pred             EeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcE
Q 038858          516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIES  595 (740)
Q Consensus       516 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  595 (740)
                                                  +|+.|+|++|.+.+..|  +..+++|+.|+|++|.+++.  ..+..+++|+.
T Consensus       154 ----------------------------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~  201 (605)
T 1m9s_A          154 ----------------------------KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV  201 (605)
T ss_dssp             ----------------------------TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE
T ss_pred             ----------------------------CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCE
Confidence                                        55555555555554333  55556666666666666542  34555666666


Q ss_pred             EECCCCcCC
Q 038858          596 LDLYHNKLN  604 (740)
Q Consensus       596 L~Ls~N~l~  604 (740)
                      |+|++|++.
T Consensus       202 L~L~~N~l~  210 (605)
T 1m9s_A          202 LELFSQECL  210 (605)
T ss_dssp             EECCSEEEE
T ss_pred             EEccCCcCc
Confidence            666666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=3.8e-17  Score=168.57  Aligned_cols=102  Identities=18%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             CCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCc-EEeCcCCcCCCccchhcc
Q 038858          510 LNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ-TLNLSHNNLTGTILSTFT  588 (740)
Q Consensus       510 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~  588 (740)
                      +++|+.+++++|.++.+.+.+|..        +++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~--------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQ--------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM  294 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTT--------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhC--------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence            455666666665555555555554        345666666655 5545556666666666 666666 55555566677


Q ss_pred             CcCCCcEEECCCCcCCccCchhhhcCCCCCEEE
Q 038858          589 NLRHIESLDLYHNKLNGKIPCQLVELNALVVFS  621 (740)
Q Consensus       589 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  621 (740)
                      ++++|+.+++++|.++...+..|.++++|+.+.
T Consensus       295 ~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          295 GCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            777777777766666656666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.6e-17  Score=153.73  Aligned_cols=132  Identities=17%  Similarity=0.279  Sum_probs=67.6

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      +..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..        +++|+.|++++|.+++..+..
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~Ls~n~i~~~~~~~  131 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG--------LTSLTLLDISHSAHDDSILTK  131 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT--------CTTCCEEECCSSBCBGGGHHH
T ss_pred             HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC--------CCCCCEEEecCCccCcHhHHH
Confidence            444444555555544332  1123444555555555555554433333333        345555555555555444455


Q ss_pred             ccCCCcCcEEeCcCCc-CCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858          563 IGNLTRIQTLNLSHNN-LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS  628 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  628 (740)
                      +..+++|++|++++|. ++. ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus       132 l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          132 INTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             HTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             HhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            5566666666666665 443 22 46666666666666666653 22 4556666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=4.2e-17  Score=168.25  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=81.1

Q ss_pred             ccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCc-EEECCCCcCCccCchhhhcCCCCCEE
Q 038858          542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIE-SLDLYHNKLNGKIPCQLVELNALVVF  620 (740)
Q Consensus       542 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L  620 (740)
                      +++|+.+++++|+++.+.+.+|.++++|+.|+|.+| ++.+...+|.++++|+ .+++.+ .++...+..|..+++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            467888888888888777777888888888888887 7767777888888888 888887 6766667788888888888


Q ss_pred             EccCCcccccCCCCCccccCCCccc
Q 038858          621 SVAYNNLSGKIPEMTTQFATFNESN  645 (740)
Q Consensus       621 ~l~~N~l~~~~~~~~~~~~~l~~~~  645 (740)
                      ++++|+++...+.+|..+++|+.+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            8888888888777787777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=3.2e-19  Score=196.34  Aligned_cols=120  Identities=25%  Similarity=0.359  Sum_probs=95.6

Q ss_pred             cccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcC
Q 038858          512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR  591 (740)
Q Consensus       512 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  591 (740)
                      .|+.|++++|.+++. |. +..        +++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .|..++
T Consensus       442 ~L~~L~Ls~n~l~~l-p~-~~~--------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~  508 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CH-LEQ--------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP  508 (567)
T ss_dssp             TCSEEECTTSCCSSC-CC-GGG--------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred             CceEEEecCCCCCCC-cC-ccc--------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence            488888888888764 43 544        678889999999888 678888889999999999999987 45 888899


Q ss_pred             CCcEEECCCCcCCccC-chhhhcCCCCCEEEccCCcccccCCCCCc---cccCCCcc
Q 038858          592 HIESLDLYHNKLNGKI-PCQLVELNALVVFSVAYNNLSGKIPEMTT---QFATFNES  644 (740)
Q Consensus       592 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---~~~~l~~~  644 (740)
                      +|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|....   .+++|+.+
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            9999999999998776 88888999999999999999887665321   24555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=6.5e-17  Score=160.56  Aligned_cols=171  Identities=20%  Similarity=0.273  Sum_probs=144.8

Q ss_pred             CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC
Q 038858          448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI  527 (740)
Q Consensus       448 ~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  527 (740)
                      .+..+..++++++.++              .++ .+..+++|+.|++++|.++. .+ .+..+++|+.|++++|++++..
T Consensus        17 ~l~~l~~l~l~~~~i~--------------~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~   79 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT--------------DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLS   79 (263)
T ss_dssp             HHHHHHHHHHTCSCTT--------------SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG
T ss_pred             HHHHHHHHHhcCCCcc--------------ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCCh
Confidence            3566778888888876              333 47889999999999999984 44 6889999999999999998765


Q ss_pred             CCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccC
Q 038858          528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKI  607 (740)
Q Consensus       528 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  607 (740)
                      +  +..        +++|+.|++++|++++. |. +.. ++|+.|++++|++++.  ..+..+++|+.|++++|++++. 
T Consensus        80 ~--l~~--------l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-  143 (263)
T 1xeu_A           80 P--LKD--------LTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-  143 (263)
T ss_dssp             G--GTT--------CSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred             h--hcc--------CCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence            4  544        68999999999999964 33 333 8999999999999974  4699999999999999999865 


Q ss_pred             chhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCC
Q 038858          608 PCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCG  654 (740)
Q Consensus       608 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~  654 (740)
                      + .+..+++|++|++++|++++.  ..+..+++|+.+++++|++.|.
T Consensus       144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            4 689999999999999999987  4568899999999999998875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.8e-16  Score=150.14  Aligned_cols=153  Identities=18%  Similarity=0.271  Sum_probs=132.1

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      ...+++|+.|++++|.++ ..+ .+..+++|++|++++|.+...  ..+..        +++|+.|++++|.+++..+..
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~--------l~~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISG--------LSNLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTT--------CTTCCEEEEECTTCBGGGSCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhc--------CCCCCEEEeECCccCcccChh
Confidence            367889999999999998 444 688999999999999976532  23433        689999999999999878889


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc-CCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCC
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK-LNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATF  641 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  641 (740)
                      +..+++|++|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|++++..  .+..+++|
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L  183 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKL  183 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSC
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCC
Confidence            9999999999999999998889999999999999999998 65 556 6899999999999999999744  46889999


Q ss_pred             CccccCCCCC
Q 038858          642 NESNYKGNPF  651 (740)
Q Consensus       642 ~~~~~~~Np~  651 (740)
                      +.+++++|+.
T Consensus       184 ~~L~l~~N~i  193 (197)
T 4ezg_A          184 NQLYAFSQTI  193 (197)
T ss_dssp             CEEEECBC--
T ss_pred             CEEEeeCccc
Confidence            9999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=1.9e-16  Score=149.15  Aligned_cols=113  Identities=27%  Similarity=0.362  Sum_probs=71.1

Q ss_pred             cCcEEEcccccccccccc-cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          488 RLSHLILAHNNLEGEVPV-QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..        +++|+.|++++|++++..+..|..+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l  101 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG--------ASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT--------CTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC--------cccCCEEECCCCcCCccCHHHhcCC
Confidence            556666666666544443 3556666666666666666655555554        4566666666666666666666666


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP  608 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  608 (740)
                      ++|++|+|++|++++..|..|..+++|++|++++|++.+..+
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            677777777777766666666667777777777777665443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1.4e-18  Score=191.30  Aligned_cols=122  Identities=27%  Similarity=0.308  Sum_probs=103.4

Q ss_pred             cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858          488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT  567 (740)
Q Consensus       488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  567 (740)
                      .|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..        +++|+.|++++|.+++ +| .++.++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------l~~L~~L~Ls~N~l~~-lp-~l~~l~  508 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA--------LRCLEVLQASDNALEN-VD-GVANLP  508 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG--------CTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc--------CCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence            58899999999985 454 888999999999999988 55666665        6799999999999986 56 789999


Q ss_pred             cCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCccCch---hhhcCCCCCEEEc
Q 038858          568 RIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKIPC---QLVELNALVVFSV  622 (740)
Q Consensus       568 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l  622 (740)
                      +|+.|+|++|++++.. |..|..+++|+.|+|++|++++..|.   .+..+++|+.|++
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999999887 99999999999999999999876553   2445899999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=7.5e-16  Score=143.23  Aligned_cols=133  Identities=20%  Similarity=0.231  Sum_probs=98.4

Q ss_pred             ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858          513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH  592 (740)
Q Consensus       513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  592 (740)
                      .+.++++++.+.... ..+          .++|+.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++
T Consensus         9 ~~~l~~~~~~l~~~p-~~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TGI----------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSCCSSCC-TTC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEecCCCCccCC-CCC----------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence            356666666665332 222          236777777777777666666777888888888888888776777788888


Q ss_pred             CcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          593 IESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       593 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..+..+++++.+++++||+.|+|+
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8888888888886666667778888888888888887777666777888888888888888876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=6e-15  Score=155.11  Aligned_cols=265  Identities=15%  Similarity=0.147  Sum_probs=125.8

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL  383 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (740)
                      +..++.+.+-+ .++.+...+|.++ +|+.+.+.++ ++ .++...|.++ +|+.+.+.. .+..+...+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            34555555543 2343445555553 4666665544 43 4444444442 455555553 4444444455555555555


Q ss_pred             EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858          384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      ++.+|.+......+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.+...+|.+               
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~---------------  247 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE---------------  247 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---------------
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc---------------
Confidence            5555555444444443 345555555432 33333444444445554444432 22233333333               


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcccc-----CCCCCcccccccch
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH-----GLIPPCFDNTALHE  538 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~  538 (740)
                                             .+|+.+.+. +.++.....+|.++++|+.+++.+|.+.     .+.+.+|..     
T Consensus       248 -----------------------~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-----  298 (401)
T 4fdw_A          248 -----------------------SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-----  298 (401)
T ss_dssp             -----------------------CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-----
T ss_pred             -----------------------CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-----
Confidence                                   345555552 2333344445555555555555554432     222333333     


Q ss_pred             hhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCC-CC
Q 038858          539 RRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN-AL  617 (740)
Q Consensus       539 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L  617 (740)
                         +++|+.+++. +.+..+...+|.++++|+.++|..+ ++.....+|.++ +|+.+++++|.+....+..|..++ .+
T Consensus       299 ---c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l  372 (401)
T 4fdw_A          299 ---CPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI  372 (401)
T ss_dssp             ---CTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred             ---CccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence               3345555554 2244344455555566666666433 444445556655 566666666655544444454443 45


Q ss_pred             CEEEccCCcc
Q 038858          618 VVFSVAYNNL  627 (740)
Q Consensus       618 ~~L~l~~N~l  627 (740)
                      +.+.+..+.+
T Consensus       373 ~~l~vp~~~~  382 (401)
T 4fdw_A          373 TVIRVPAESV  382 (401)
T ss_dssp             CEEEECGGGH
T ss_pred             cEEEeCHHHH
Confidence            5555554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=1.2e-14  Score=152.83  Aligned_cols=271  Identities=14%  Similarity=0.132  Sum_probs=193.7

Q ss_pred             CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858          279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI  358 (740)
Q Consensus       279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  358 (740)
                      +..++.+.+.++ ++ .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+. .++...|.+|++|+.
T Consensus       112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            367778887653 55 6777777654 8999999876 777778889885 799999986 666 788888889999999


Q ss_pred             EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858          359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL  438 (740)
Q Consensus       359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  438 (740)
                      +++.+|.+..+....|. ..+|+.+.+..+ +......+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCc
Confidence            99999999988888776 689999999855 77777889999999999999875 55566677877 78999999 4556


Q ss_pred             cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858          439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL  518 (740)
Q Consensus       439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  518 (740)
                      +.+...+|.++++|+.+++.+|.+..        +......+.+|.+|++|+.+.+.+ .++.....+|.++++|+.+.|
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~--------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFND--------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCC--------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccC--------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence            66777889999999999988876531        011112234455566666666553 344444445555555555555


Q ss_pred             CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcC-CCcEEE
Q 038858          519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR-HIESLD  597 (740)
Q Consensus       519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~  597 (740)
                      ..+                                 ++.+.+.+|.++ +|+.+++++|.+.......|.+++ .++.|+
T Consensus       331 p~~---------------------------------l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          331 PAN---------------------------------VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             CTT---------------------------------CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred             Ccc---------------------------------ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence            332                                 333445566666 777777777766666666666663 567777


Q ss_pred             CCCCcCC
Q 038858          598 LYHNKLN  604 (740)
Q Consensus       598 Ls~N~l~  604 (740)
                      +..+.+.
T Consensus       377 vp~~~~~  383 (401)
T 4fdw_A          377 VPAESVE  383 (401)
T ss_dssp             ECGGGHH
T ss_pred             eCHHHHH
Confidence            7666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2e-15  Score=138.96  Aligned_cols=134  Identities=21%  Similarity=0.277  Sum_probs=92.4

Q ss_pred             ccCcEEEccccccc-ccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC
Q 038858          487 LRLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN  565 (740)
Q Consensus       487 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  565 (740)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..        +++|+.|++++|.+.+.+|..+..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK--------LPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------CSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------CCCCCEEECcCCcCchHHHHHHhh
Confidence            55666666666665 44555566666677777777766644  33333        457777777777777656666666


Q ss_pred             CCcCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCccCc---hhhhcCCCCCEEEccCCccccc
Q 038858          566 LTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKIP---CQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       566 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      +++|+.|++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+...
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            778888888888887643 2677788888888888888875544   4677788888888888877643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=2.8e-14  Score=150.99  Aligned_cols=128  Identities=11%  Similarity=0.028  Sum_probs=62.5

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      |..+..++.+.+..+... .....|..+..++.+....+.+.   ...|..        ..+|+.+.+..+ +..+...+
T Consensus       249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~--------~~~L~~i~l~~~-i~~I~~~a  315 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYG--------CSSLTEVKLLDS-VKFIGEEA  315 (394)
T ss_dssp             TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTT--------CTTCCEEEECTT-CCEECTTT
T ss_pred             ccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccc--------cccccccccccc-cceechhh
Confidence            344444555554444322 33344444555555544433221   112222        235555555433 33344455


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      |.++++|+.++|.++ ++.....+|.++++|+.+++..+ ++......|.++++|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            666666666666533 44444556666666666666554 44444555666666666665443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=3.5e-16  Score=177.88  Aligned_cols=215  Identities=19%  Similarity=0.159  Sum_probs=80.6

Q ss_pred             CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcc---------cCCCCCCCccCcceeeccCCcccCCCCcccc
Q 038858          377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG---------KIPQWLGNLTGLQYIIIPENHLEGPIPVAFC  447 (740)
Q Consensus       377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~---------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  447 (740)
                      .+.++.|++.+|.+... +..     .++.++|+.+.+.+         ..+..+..++.|+.|++++|.+. .++..+.
T Consensus       172 ~~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~  244 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF  244 (727)
T ss_dssp             --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred             CCccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence            35567777777776543 222     22333333333221         33455556666666666666665 3444444


Q ss_pred             CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC
Q 038858          448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI  527 (740)
Q Consensus       448 ~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  527 (740)
                      .+++|++|+|++|.++              .+|..+..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.++ .+
T Consensus       245 ~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l  308 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT--------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL  308 (727)
T ss_dssp             GCCSCSCCBCTTSCCS--------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred             CCCCCCEEEeeCCcCc--------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence            5666666666666655              44555666666666666666666 44556666666666666666665 33


Q ss_pred             CCcccccccchhhhccccceEEccCccccccCCcCccCCCc-CcEEeCcCCcCCCccchhccCcCCCcEEECCCC-----
Q 038858          528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR-IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN-----  601 (740)
Q Consensus       528 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N-----  601 (740)
                      |..|..        +++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.      .|+.|++++|     
T Consensus       309 p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~  374 (727)
T 4b8c_D          309 PWEFGN--------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQR  374 (727)
T ss_dssp             CSSTTS--------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------
T ss_pred             Chhhhc--------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccccccc
Confidence            444444        456666666666666555555443321 22355666666655443      2344455554     


Q ss_pred             ---cCCccCchhhhcCCCCCEEEccCCccc
Q 038858          602 ---KLNGKIPCQLVELNALVVFSVAYNNLS  628 (740)
Q Consensus       602 ---~l~~~~~~~~~~l~~L~~L~l~~N~l~  628 (740)
                         .+.+..+..+..+..+....+++|-+.
T Consensus       375 ~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          375 EYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ---------------------------CCC
T ss_pred             ccCCccccccchhhcccccceeeeeccccc
Confidence               223233333344444555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=4e-16  Score=177.34  Aligned_cols=224  Identities=19%  Similarity=0.176  Sum_probs=106.8

Q ss_pred             CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEE
Q 038858          329 NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLH  408 (740)
Q Consensus       329 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  408 (740)
                      +.++.|++.+|.+. ..+..      .++.++|+.+.+.+              +++..|.+. ..+..+..++.|+.|+
T Consensus       173 ~~~~~l~L~~n~~~-~~~~~------~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~  230 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQA------LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             CccceEEeeCCCCC-cchhh------HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEE
Confidence            45666777777665 33222      23445555544432              223333333 4456677778888888


Q ss_pred             ccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcccc
Q 038858          409 LNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLR  488 (740)
Q Consensus       409 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~  488 (740)
                      +++|.+. .++..+..+++|++|++++|.++ .+|..|..+++|+.|+|++|.++              .+|..+..+++
T Consensus       231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~  294 (727)
T 4b8c_D          231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--------------SLPAELGSCFQ  294 (727)
T ss_dssp             CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--------------SCCSSGGGGTT
T ss_pred             CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--------------ccChhhcCCCC
Confidence            8888877 55655667888888888888887 66777888888888888888876              55666788888


Q ss_pred             CcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858          489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR  568 (740)
Q Consensus       489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  568 (740)
                      |++|+|++|.++ .+|..++.+++|+.|+|++|.+++.+|..+....       .....+++++|.+++.+|.      .
T Consensus       295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-------~~~~~l~l~~N~l~~~~p~------~  360 (727)
T 4b8c_D          295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS-------VTGLIFYLRDNRPEIPLPH------E  360 (727)
T ss_dssp             CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH-------HHHHHHHHHHCCCCCCCCC------C
T ss_pred             CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc-------hhhhHHhhccCcccCcCcc------c
Confidence            888888888887 5666788888888888888888877766654321       1223467888888877664      4


Q ss_pred             CcEEeCcCC--------cCCCccchhccCcCCCcEEECCCCcCC
Q 038858          569 IQTLNLSHN--------NLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       569 L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      |+.|++++|        .+.+..+..+..+..++...+++|-+.
T Consensus       361 l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          361 RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----------------------------------------CCC
T ss_pred             cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            556666666        344444455566667777778888775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=3.1e-15  Score=134.62  Aligned_cols=127  Identities=19%  Similarity=0.281  Sum_probs=78.1

Q ss_pred             ccCcEEEccccccc-ccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC
Q 038858          487 LRLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN  565 (740)
Q Consensus       487 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  565 (740)
                      ++|+.|++++|.++ +..|..+..+++|+.|++++|.+++.  ..+..        +++|+.|++++|.+++.+|..+..
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK--------LNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------CTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------CCCCCEEECCCCcccchHHHHhhh
Confidence            56667777777666 45565666667777777777766544  23333        456666666666666555555555


Q ss_pred             CCcCcEEeCcCCcCCCc-cchhccCcCCCcEEECCCCcCCccCc---hhhhcCCCCCEEEcc
Q 038858          566 LTRIQTLNLSHNNLTGT-ILSTFTNLRHIESLDLYHNKLNGKIP---CQLVELNALVVFSVA  623 (740)
Q Consensus       566 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~  623 (740)
                      +++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|++|+++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666666666666653 23556666666666666666664444   356666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=135.37  Aligned_cols=128  Identities=26%  Similarity=0.295  Sum_probs=80.9

Q ss_pred             cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858          490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI  569 (740)
Q Consensus       490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  569 (740)
                      +.++++++.++ .+|..+.  ++|+.|++++|.++ .+|..|..        +++|+.|++++|.+++..+..|..+++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~--------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN--------YKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG--------CTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc--------ccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            34555555555 2332221  35666666666665 23334433        4566666666666666666667777777


Q ss_pred             cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858          570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  629 (740)
                      ++|+|++|++++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.+
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            777777777776666677777777777777777775555566677777777777777764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=6.3e-15  Score=132.64  Aligned_cols=130  Identities=15%  Similarity=0.150  Sum_probs=113.7

Q ss_pred             CCCcccEEeCCCcccc-CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhc
Q 038858          509 GLNQLQLLDLSDNKLH-GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF  587 (740)
Q Consensus       509 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  587 (740)
                      ..++|+.|++++|.+. +..|..+..        +++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDE--------FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTT--------CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhh--------cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence            3478999999999998 677776665        67999999999999966  788999999999999999998888889


Q ss_pred             cCcCCCcEEECCCCcCCcc-CchhhhcCCCCCEEEccCCcccccCC---CCCccccCCCccccCC
Q 038858          588 TNLRHIESLDLYHNKLNGK-IPCQLVELNALVVFSVAYNNLSGKIP---EMTTQFATFNESNYKG  648 (740)
Q Consensus       588 ~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~~~~~~  648 (740)
                      ..+++|++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.+++++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999999999999864 44789999999999999999998776   4677888898887753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=2e-14  Score=133.55  Aligned_cols=133  Identities=24%  Similarity=0.283  Sum_probs=88.6

Q ss_pred             CcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858          489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR  568 (740)
Q Consensus       489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  568 (740)
                      .+.++++++.++. +|..+  .++|+.|++++|.+.+..+..+..        +++|+.|++++|.+++..+..|..+++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDK--------LTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTT--------CTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcC--------cccccEEECCCCcceEeChhHccCCCc
Confidence            3455666665553 22222  246666777776666555544444        456777777777776655566777777


Q ss_pred             CcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858          569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       569 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  632 (740)
                      |++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8888888877777666677777788888888887776555556777788888888887776544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=9.7e-15  Score=134.26  Aligned_cols=109  Identities=24%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             cceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858          545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY  624 (740)
Q Consensus       545 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  624 (740)
                      .+.+++++|.++. +|..+.  ++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3456666666653 443332  5666777777777766666677777777777777777655555566677777777777


Q ss_pred             CcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          625 NNLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       625 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      |++++..+..+..+++|+.+++++|||.|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            77776666666667777777777777777774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=8.9e-15  Score=134.65  Aligned_cols=134  Identities=18%  Similarity=0.136  Sum_probs=117.1

Q ss_pred             CCCcccEEeCCCcccc-CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhc
Q 038858          509 GLNQLQLLDLSDNKLH-GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF  587 (740)
Q Consensus       509 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  587 (740)
                      ..++|+.|++++|.+. +.+|..+..        +++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAE--------FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGG--------GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHh--------CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            3478999999999998 566766655        67999999999999866  788999999999999999998888889


Q ss_pred             cCcCCCcEEECCCCcCCccC-chhhhcCCCCCEEEccCCcccccCC---CCCccccCCCccccCCCCCC
Q 038858          588 TNLRHIESLDLYHNKLNGKI-PCQLVELNALVVFSVAYNNLSGKIP---EMTTQFATFNESNYKGNPFL  652 (740)
Q Consensus       588 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~~~~~~Np~~  652 (740)
                      ..+++|++|++++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|+.+++.+|+..
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            89999999999999998643 2788999999999999999998766   46788999999999988654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=1.1e-13  Score=146.40  Aligned_cols=314  Identities=14%  Similarity=0.083  Sum_probs=203.0

Q ss_pred             CChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCC
Q 038858          296 IPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF  375 (740)
Q Consensus       296 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  375 (740)
                      +....|..+.+|+.+.+.. .++.+...+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence            3344444445555555542 244344455555555555555433 33 445555555555555554432 3333334444


Q ss_pred             CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEE
Q 038858          376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL  455 (740)
Q Consensus       376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  455 (740)
                      ++..++......  .......+|..|++|+.+.+.++.. ......|.++.+|+.+.+..+ ++.+...+|.++..|+.+
T Consensus       138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            443322222222  2223345677788888888866533 255567777888888888765 444556677788888887


Q ss_pred             eccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccc
Q 038858          456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTA  535 (740)
Q Consensus       456 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  535 (740)
                      .+..+...               +.+.+....+|+.+.+... ++......+.++..++.+.+..+... .....|..  
T Consensus       214 ~~~~~~~~---------------i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~--  274 (394)
T 4fs7_A          214 EFPNSLYY---------------LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN--  274 (394)
T ss_dssp             CCCTTCCE---------------ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT--
T ss_pred             ecCCCceE---------------eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccc--
Confidence            77655432               1222344567888888654 33356677889999999999877543 44555555  


Q ss_pred             cchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCC
Q 038858          536 LHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN  615 (740)
Q Consensus       536 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  615 (740)
                            ...++.+....+.+.   ...|..+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++......|.++.
T Consensus       275 ------~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~  343 (394)
T 4fs7_A          275 ------CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT  343 (394)
T ss_dssp             ------CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred             ------ccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence                  467888887766543   357889999999999865 66677889999999999999755 7667778899999


Q ss_pred             CCCEEEccCCcccccCCCCCccccCCCccccCC
Q 038858          616 ALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG  648 (740)
Q Consensus       616 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~  648 (740)
                      +|+.+++..| ++.....+|..+.+|+.+.+..
T Consensus       344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            9999999877 7777788888888888877644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=3.2e-14  Score=131.20  Aligned_cols=108  Identities=20%  Similarity=0.244  Sum_probs=65.3

Q ss_pred             ceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858          546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       546 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      +.+++++|++. .+|..+.  ++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34555555554 3343332  55666666666666655666666666666666666666544444566666666666666


Q ss_pred             cccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          626 NLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       626 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      ++++..+..+..+++|+.+++++|||.|+|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            6666555555666666666666666666664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=5.2e-14  Score=130.48  Aligned_cols=131  Identities=18%  Similarity=0.159  Sum_probs=69.4

Q ss_pred             cccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC
Q 038858          486 LLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN  565 (740)
Q Consensus       486 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  565 (740)
                      +.+|+.|++++|.++.. +......++|+.|++++|.+++.  ..+..        +++|+.|++++|.+++..+..|..
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~--------l~~L~~L~Ls~N~l~~~~~~~~~~   86 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPL--------LRRLKTLLVNNNRICRIGEGLDQA   86 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCC--------CSSCCEEECCSSCCCEECSCHHHH
T ss_pred             cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccccc--------CCCCCEEECCCCcccccCcchhhc
Confidence            34444444444444422 22222222555555555555432  22222        345555555555555443344466


Q ss_pred             CCcCcEEeCcCCcCCCccc-hhccCcCCCcEEECCCCcCCccCchh----hhcCCCCCEEEccCCccc
Q 038858          566 LTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNGKIPCQ----LVELNALVVFSVAYNNLS  628 (740)
Q Consensus       566 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~  628 (740)
                      +++|++|++++|.++.... ..+..+++|+.|++++|+++ .+|..    +..+++|++||+++|...
T Consensus        87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6666677777666653221 25666677777777777766 33443    666677777777766654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=6.8e-14  Score=129.69  Aligned_cols=134  Identities=19%  Similarity=0.187  Sum_probs=111.7

Q ss_pred             cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccch
Q 038858          506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS  585 (740)
Q Consensus       506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  585 (740)
                      .+..+++|+.|++++|.+... +. +...       .++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~-------~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGAT-------LDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGGG-------TTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhhc-------CCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc
Confidence            466788999999999999854 33 3221       34899999999999976  6789999999999999999987667


Q ss_pred             hccCcCCCcEEECCCCcCCccCch--hhhcCCCCCEEEccCCcccccCCC---CCccccCCCccccCCCCC
Q 038858          586 TFTNLRHIESLDLYHNKLNGKIPC--QLVELNALVVFSVAYNNLSGKIPE---MTTQFATFNESNYKGNPF  651 (740)
Q Consensus       586 ~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~~~~~~Np~  651 (740)
                      .|..+++|++|++++|+++ .+|.  .+..+++|+.|++++|+++...+.   .+..++.++.+++++|+.
T Consensus        83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            7799999999999999997 5565  788999999999999999854332   367889999999988753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.44  E-value=6.1e-12  Score=132.98  Aligned_cols=131  Identities=13%  Similarity=0.162  Sum_probs=66.8

Q ss_pred             hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858          481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP  560 (740)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  560 (740)
                      .+|.++..|+.+.+.++... .....|.++++|+.+.+. +.+..+...+|..        +.+|+.+++..+ ++.+..
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~--------c~~L~~i~lp~~-v~~I~~  327 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG--------CISLKSIDIPEG-ITQILD  327 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT--------CTTCCEEECCTT-CCEECT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecC--------CCCcCEEEeCCc-ccEehH
Confidence            44566666666666554332 445556666666666664 2344344444444        345666666543 443444


Q ss_pred             cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858          561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN  626 (740)
Q Consensus       561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  626 (740)
                      .+|.++++|+.+.+..+ ++.....+|.++++|+.+++.++...   ...+.....|+.+.+..|.
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            56666666666666533 44455566666666666666665432   1234445556655555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=3.6e-15  Score=141.32  Aligned_cols=160  Identities=21%  Similarity=0.266  Sum_probs=102.3

Q ss_pred             cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCC
Q 038858          447 CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGL  526 (740)
Q Consensus       447 ~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  526 (740)
                      .....++.++++.+.+.+..|.      + ..+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+.. 
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~------l-~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-   84 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPP------I-EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-   84 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTT------C-CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-
T ss_pred             HhcccccCcchheeEeccccCc------H-hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-
Confidence            3344555566666655544332      0 1345567777778888887777775 44 66777777777777777763 


Q ss_pred             CCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccc-hhccCcCCCcEEECCCCcCCc
Q 038858          527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNG  605 (740)
Q Consensus       527 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  605 (740)
                      +|..+..        +++|+.|++++|.+++. | .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+
T Consensus        85 l~~~~~~--------~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           85 IENLDAV--------ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CSSHHHH--------HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ccchhhc--------CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            3333322        45777777777777753 3 46677777777777777775433 467777777777777777765


Q ss_pred             cCchh----------hhcCCCCCEEEccCCccc
Q 038858          606 KIPCQ----------LVELNALVVFSVAYNNLS  628 (740)
Q Consensus       606 ~~~~~----------~~~l~~L~~L~l~~N~l~  628 (740)
                      .+|..          +..+++|+.||  +|+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          155 DYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            55432          66677777765  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2.2e-15  Score=142.85  Aligned_cols=155  Identities=19%  Similarity=0.208  Sum_probs=127.0

Q ss_pred             hhccccCcEEEcccccccccccc------cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPV------QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI  556 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  556 (740)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..        +++|+.|++++|.+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~--------l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG--------MENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH--------HTTCCEEEEEEEEEC
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc--------CCCCCEEECCCCCcc
Confidence            45567788888888888777665      88999999999999999987 34 4444        789999999999999


Q ss_pred             ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc-hhhhcCCCCCEEEccCCcccccCCCC-
Q 038858          557 GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP-CQLVELNALVVFSVAYNNLSGKIPEM-  634 (740)
Q Consensus       557 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~-  634 (740)
                       .+|..+..+++|++|++++|++++. + .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..|.. 
T Consensus        84 -~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  160 (198)
T 1ds9_A           84 -KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN  160 (198)
T ss_dssp             -SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred             -cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence             5677778889999999999999973 3 78999999999999999985433 57889999999999999998876652 


Q ss_pred             ---------CccccCCCccccCCCCCC
Q 038858          635 ---------TTQFATFNESNYKGNPFL  652 (740)
Q Consensus       635 ---------~~~~~~l~~~~~~~Np~~  652 (740)
                               +..+++|+.++  +||..
T Consensus       161 ~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          161 ATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             THHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             chHHHHHHHHHhCCCcEEEC--CcccC
Confidence                     45667777665  55543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=1.6e-11  Score=129.68  Aligned_cols=145  Identities=8%  Similarity=0.091  Sum_probs=100.3

Q ss_pred             ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      ..+..+.+.. .++.....+|.++..|+.+.+.++.. ......|..        ++.|+.+.+. +.+..+...+|.++
T Consensus       242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~--------c~~L~~i~l~-~~i~~I~~~aF~~c  310 (394)
T 4gt6_A          242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMN--------CPALQDIEFS-SRITELPESVFAGC  310 (394)
T ss_dssp             CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTT--------CTTCCEEECC-TTCCEECTTTTTTC
T ss_pred             cccceEEcCC-cceEcccceeeecccccEEecccccc-eecCccccc--------ccccccccCC-CcccccCceeecCC
Confidence            3444555543 23445567788999999999976543 344555555        5689999996 45665667789999


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcccc
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNY  646 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~  646 (740)
                      ++|+.++|..+ ++.....+|.++++|+.+.+..+ ++......|.++++|+.+++.++....   ..+.....|+.+.+
T Consensus       311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV  385 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred             CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence            99999999864 66666789999999999999755 665667889999999999999886542   22344455555544


Q ss_pred             C
Q 038858          647 K  647 (740)
Q Consensus       647 ~  647 (740)
                      .
T Consensus       386 ~  386 (394)
T 4gt6_A          386 A  386 (394)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=9.4e-13  Score=120.92  Aligned_cols=109  Identities=21%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858          513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH  592 (740)
Q Consensus       513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  592 (740)
                      .+.+++++|.++. +|..+.          +.|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~----------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP----------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC----------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEeCCCCcCc-cCccCC----------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            4667777777764 333331          46778888888888777778888888888888888888777777888888


Q ss_pred             CcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858          593 IESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP  632 (740)
Q Consensus       593 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  632 (740)
                      |++|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            8888888888887666678888888888888888876543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=2.9e-12  Score=118.03  Aligned_cols=106  Identities=21%  Similarity=0.261  Sum_probs=74.0

Q ss_pred             cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCC
Q 038858          514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI  593 (740)
Q Consensus       514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  593 (740)
                      +.+++++|.+.. +|..+.          +.|+.|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus        15 ~~l~~~~n~l~~-iP~~~~----------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L   83 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP----------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL   83 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC----------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cEEEeCCCCCCc-cCCCcC----------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence            556666666643 333322          367777777777776667777777777777887777777666667777788


Q ss_pred             cEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       594 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      ++|+|++|++++..+..|..+++|++|++++|++...
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            8888888877765555577777888888888877754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=1.2e-12  Score=136.09  Aligned_cols=106  Identities=15%  Similarity=0.229  Sum_probs=64.8

Q ss_pred             EEccCc-cccccCCcCccCCCcCcEEeCcC-CcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858          548 IDLSCN-KLIGDIPPQIGNLTRIQTLNLSH-NNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       548 L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      ++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 555 3454 66666666666664 6666655566666666666666666666666666666666666666666


Q ss_pred             cccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858          626 NLSGKIPEMTTQFATFNESNYKGNPFLCGLP  656 (740)
Q Consensus       626 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  656 (740)
                      +|++..+..+..+. |+.+++.+|+|.|+|+
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            66655555544444 6666666666666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.7e-13  Score=142.61  Aligned_cols=44  Identities=25%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             ccCCCcCcEEeCcCCcCCCcc----chhccCcCCCcEEECCCCcCCcc
Q 038858          563 IGNLTRIQTLNLSHNNLTGTI----LSTFTNLRHIESLDLYHNKLNGK  606 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~  606 (740)
                      +...++|++|+|++|.++...    ..++...++|++|+|++|.++..
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            334445555555555554321    22233345555555555555433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=4.1e-13  Score=139.74  Aligned_cols=168  Identities=20%  Similarity=0.207  Sum_probs=122.2

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCc-cccC-CCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCC---
Q 038858            4 FSSLNTLCLMDNNLTEIVTTTT-QELH-NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGF---   78 (740)
Q Consensus         4 l~~L~~L~Ls~n~i~~~~~~~~-~~l~-~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l---   78 (740)
                      .++|++|+|++|.++......+ ..+. ..++|++|+|++|.+.+.....+...+++|++|++++|.+.+... ..+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHH
Confidence            3679999999999986532101 2233 337999999999999877666666657899999999999874321 112   


Q ss_pred             --CCCCCCCEEecCCCccccCcc----chHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc
Q 038858           79 --PHFKSLEYLDMNTACIALNAS----FLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS  152 (740)
Q Consensus        79 --~~l~~L~~L~L~~~~i~~~~~----~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~  152 (740)
                        ...++|++|+|++|.+  ++.    +...+.. +++|++|+|++|.+++.........+...++|++|+|++|.+++.
T Consensus       150 L~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPL--TAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHSTTCCCCEEECCSSCC--HHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             HHhcCCccceeeCCCCCC--ChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence              3468999999999954  332    3334455 899999999999887221111122567788999999999999753


Q ss_pred             ----cCccccCCCCCCEEEccCCcCcc
Q 038858          153 ----LPWCLANMTSLRTLDVSSNQLTG  175 (740)
Q Consensus       153 ----~~~~l~~l~~L~~L~L~~n~l~~  175 (740)
                          ++..+...++|++|+|++|.+++
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence                33445667999999999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.19  E-value=2.7e-09  Score=112.04  Aligned_cols=131  Identities=10%  Similarity=0.079  Sum_probs=75.5

Q ss_pred             hhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc
Q 038858          482 RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP  561 (740)
Q Consensus       482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  561 (740)
                      .+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++.+....|..        ...|+.+.+..+ +......
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~--------~~~l~~i~l~~~-i~~i~~~  280 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN--------CTALKTLNFYAK-VKTVPYL  280 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT--------CTTCCEEEECCC-CSEECTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce--------eehhcccccccc-ceecccc
Confidence            3445556666666543 23344455666666666666544 33333444443        345666666433 3334445


Q ss_pred             CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858          562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY  624 (740)
Q Consensus       562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  624 (740)
                      +|.++++|+.+.+.++.++.....+|.++++|+.+++..+ ++......|.++.+|+.+.+..
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            6667777777777766666666667777777777777544 4444455666666776666643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=2.8e-11  Score=125.62  Aligned_cols=102  Identities=25%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             EEcccc-cccccccccccCCCcccEEeCCC-ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858          492 LILAHN-NLEGEVPVQLCGLNQLQLLDLSD-NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI  569 (740)
Q Consensus       492 L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  569 (740)
                      ++++++ .+++ +|. +..+++|+.|+|++ |.+.+..+..|..        +++|+.|+|++|++++..|..|..+++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~--------l~~L~~L~l~~N~l~~~~~~~~~~l~~L   82 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCS--------CCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcc--------ccCCCEEECCCCccceeCHHHhcCCcCC
Confidence            455555 5552 344 55555555555554 5555444444443        3455555555555555544455555555


Q ss_pred             cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      +.|+|++|++++..+..|..++ |+.|+|.+|++.
T Consensus        83 ~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            5555555555544444444443 555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.14  E-value=3.3e-09  Score=111.44  Aligned_cols=298  Identities=10%  Similarity=0.045  Sum_probs=180.9

Q ss_pred             CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858          304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL  383 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  383 (740)
                      ..+|+.+.+.. .++.+...+|.+|.+|+.+.+..+ ++ .+....|.++ +|+.+.+..+ +..+...+|.. .+|+.+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i  118 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF  118 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence            45677777753 355556667777777777777543 54 5666666555 5666655432 33333334433 256666


Q ss_pred             EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858          384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      .+..+ +.......|..+ +++.+.+..+ ++......+..+..++...+..+.........+                 
T Consensus       119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-----------------  178 (379)
T 4h09_A          119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-----------------  178 (379)
T ss_dssp             ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-----------------
T ss_pred             cCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce-----------------
Confidence            65543 222222333333 3444444332 222333344444455444443332210000000                 


Q ss_pred             CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858          464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS  543 (740)
Q Consensus       464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~  543 (740)
                             ..+. .......+.....+..+.+..... ......+..+.+|+.+.+..+ +.......|..        ..
T Consensus       179 -------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~--------~~  240 (379)
T 4h09_A          179 -------LYNK-NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYG--------MK  240 (379)
T ss_dssp             -------EEET-TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTT--------CS
T ss_pred             -------eccc-ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccC--------Cc
Confidence                   0000 001122234455666666655433 245566778889999988754 33344455544        56


Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA  623 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  623 (740)
                      .|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++.++...+..|.++.+|+.+++.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            8999999776 66566778999999999999754 665667899999999999999999987778889999999999997


Q ss_pred             CCcccccCCCCCccccCCCccccCC
Q 038858          624 YNNLSGKIPEMTTQFATFNESNYKG  648 (740)
Q Consensus       624 ~N~l~~~~~~~~~~~~~l~~~~~~~  648 (740)
                      .+ ++.....+|..+.+|+.+.+..
T Consensus       319 ~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          319 TA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cc-ccEEHHHHhhCCCCCCEEEECC
Confidence            55 7767778888888898887644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.1e-09  Score=112.70  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=18.5

Q ss_pred             cccCcEEEccccccccccccccc--CCCcccEEeCC
Q 038858          486 LLRLSHLILAHNNLEGEVPVQLC--GLNQLQLLDLS  519 (740)
Q Consensus       486 l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~  519 (740)
                      +++|+.|++..|.+.......+.  .+|+|+.|+|+
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            45666666666655433332332  45666666664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=2.8e-08  Score=102.21  Aligned_cols=162  Identities=13%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             hcCCCCCCEEEccCCCCc---------ccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858          227 LHHQNKLEDVDLSHIKMN---------GEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP  297 (740)
Q Consensus       227 l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  297 (740)
                      ...+++|+.|.+......         +.+. .++..+|+|++|.++++.-... + .+ .+++|++|++..+.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHH
Confidence            445678888888654321         1122 3447788899999887731111 1 12 36888888888877664333


Q ss_pred             hhHhh-cCCCCcEEEccCC--cCccc-----CCccc--cCCCCCcEEEeecccCCCccChhhhh--cCccCcEEEcCCcc
Q 038858          298 AEIGD-ILPSLSSFNISMN--ALDGS-----IPSSF--GNMNFLQILDLSNNHLTGEIPEHLAI--GCVNLEILVLSNNN  365 (740)
Q Consensus       298 ~~~~~-~~~~L~~L~l~~n--~~~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~  365 (740)
                      ..+.. .+|+|++|+|+.+  ...+.     +...+  ..+++|++|++.+|.+.+..+..++.  .+++|++|+++.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            33332 4788888887532  11110     11122  24677777777777766433333321  24566666666665


Q ss_pred             ccccCC----cCCCCCCCCCeEEccCCcccc
Q 038858          366 LEGHMF----SKNFNLTKLSWLLLEDNHFVE  392 (740)
Q Consensus       366 l~~~~~----~~~~~l~~L~~L~l~~n~~~~  392 (740)
                      +.+...    ..+..+++|+.|++++|.++.
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            554221    111234555555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=3.4e-08  Score=91.60  Aligned_cols=119  Identities=12%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             hhhccccCcEEEcccc-ccccc----ccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc
Q 038858          482 RIDGLLRLSHLILAHN-NLEGE----VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI  556 (740)
Q Consensus       482 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  556 (740)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.......                          
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~--------------------------   84 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA--------------------------   84 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH--------------------------
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH--------------------------
Confidence            3445566666666666 65432    2233444556666666666554221111                          


Q ss_pred             ccCCcCccCCCcCcEEeCcCCcCCCc----cchhccCcCCCcEEEC--CCCcCCcc----CchhhhcCCCCCEEEccCCc
Q 038858          557 GDIPPQIGNLTRIQTLNLSHNNLTGT----ILSTFTNLRHIESLDL--YHNKLNGK----IPCQLVELNALVVFSVAYNN  626 (740)
Q Consensus       557 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~l~~N~  626 (740)
                        +...+...++|++|+|++|.|...    +..++...++|++|+|  ++|.++..    +...+...++|++|++++|.
T Consensus        85 --l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           85 --LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             --HHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             --HHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence              112233345566666666666542    2344555666777777  66666533    23344455667777777776


Q ss_pred             cc
Q 038858          627 LS  628 (740)
Q Consensus       627 l~  628 (740)
                      +.
T Consensus       163 i~  164 (185)
T 1io0_A          163 QG  164 (185)
T ss_dssp             HH
T ss_pred             CC
Confidence            64

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=5.3e-08  Score=90.27  Aligned_cols=126  Identities=11%  Similarity=0.078  Sum_probs=85.6

Q ss_pred             CCccccCCCCccEEeccCC-cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc----cccccCCCcccEE
Q 038858          442 IPVAFCQLDSLQILGISDN-NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV----PVQLCGLNQLQLL  516 (740)
Q Consensus       442 ~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L  516 (740)
                      +...+...++|++|++++| .+...-.         ..+...+...++|++|+|++|.+....    ...+...++|++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~---------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L   98 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTL---------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL   98 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHH---------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHH---------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE
Confidence            3456778899999999999 8752100         023455667789999999999997533    3345556778888


Q ss_pred             eCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeC--cCCcCCCc----cchhccCc
Q 038858          517 DLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNL--SHNNLTGT----ILSTFTNL  590 (740)
Q Consensus       517 ~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l  590 (740)
                      +|++|.|.+....                            .+...+...++|++|+|  ++|.+...    +...+...
T Consensus        99 ~L~~N~i~~~g~~----------------------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n  150 (185)
T 1io0_A           99 NVESNFISGSGIL----------------------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN  150 (185)
T ss_dssp             ECCSSCCCHHHHH----------------------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC
T ss_pred             ECcCCcCCHHHHH----------------------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence            8888877532111                            12234555667888888  77887753    23455666


Q ss_pred             CCCcEEECCCCcCC
Q 038858          591 RHIESLDLYHNKLN  604 (740)
Q Consensus       591 ~~L~~L~Ls~N~l~  604 (740)
                      ++|++|+|++|.+.
T Consensus       151 ~~L~~L~L~~n~i~  164 (185)
T 1io0_A          151 TTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCCSSHH
T ss_pred             CCcCEEeccCCCCC
Confidence            88999999888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.28  E-value=6.9e-07  Score=76.80  Aligned_cols=61  Identities=18%  Similarity=0.311  Sum_probs=46.4

Q ss_pred             EEECCCCcCC-ccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          595 SLDLYHNKLN-GKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       595 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      .++.+++.++ ..+|..+  .++|++|+|++|+|+...++.|..++.|+.+++.+|||.|+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            6677777775 3445432  23688888888888887777788888888999999999999964

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=1.6e-07  Score=84.39  Aligned_cols=85  Identities=12%  Similarity=0.186  Sum_probs=50.4

Q ss_pred             CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCC-CCCcCCCCCCCCC----CCCCEEecCCCccccCccchHHHhc
Q 038858           32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCK-VNGVVRSQGFPHF----KSLEYLDMNTACIALNASFLQIIGA  106 (740)
Q Consensus        32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l----~~L~~L~L~~~~i~~~~~~~~~l~~  106 (740)
                      ..|++||+++|.+++.....+.. +++|++|+|++|. +++. ....++.+    ++|++|+|++|. .+++.....+..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~-~ITD~Gl~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCG-NVTDKGIIALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCT-TCCHHHHHHGGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCC-cCCHHHHHHHhc
Confidence            35667777777666665666655 6677777777764 3321 11113332    357777777764 355666666665


Q ss_pred             cCCCCcEEEccCcc
Q 038858          107 SMPFLKYLSLSYFT  120 (740)
Q Consensus       107 ~l~~L~~L~Ls~~~  120 (740)
                       +++|++|++++|.
T Consensus       138 -~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 -FRNLKYLFLSDLP  150 (176)
T ss_dssp             -CTTCCEEEEESCT
T ss_pred             -CCCCCEEECCCCC
Confidence             7777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=1.4e-07  Score=91.64  Aligned_cols=63  Identities=25%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             ccccceEEccCcccccc--CCcCccCCCcCcEEeCcCCcCCCccchhccCcC--CCcEEECCCCcCCcc
Q 038858          542 LSLLSGIDLSCNKLIGD--IPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR--HIESLDLYHNKLNGK  606 (740)
Q Consensus       542 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~  606 (740)
                      ++.|+.|+|++|.+++.  +|..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|++.+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT  235 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence            44555555555555542  223344555555555555555542  2222222  555555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=1.1e-06  Score=85.41  Aligned_cols=80  Identities=21%  Similarity=0.317  Sum_probs=54.9

Q ss_pred             cCCCcCcEEeCcCCcCCC--ccchhccCcCCCcEEECCCCcCCccCchhhhcCC--CCCEEEccCCcccccCCC------
Q 038858          564 GNLTRIQTLNLSHNNLTG--TILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN--ALVVFSVAYNNLSGKIPE------  633 (740)
Q Consensus       564 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~------  633 (740)
                      ..+++|+.|+|++|++++  .++..+..+++|+.|+|++|++++.  ..+..+.  +|++|++++|++++..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456788888888888887  3346667788888888888888754  2344444  788888888888775552      


Q ss_pred             -CCccccCCCccc
Q 038858          634 -MTTQFATFNESN  645 (740)
Q Consensus       634 -~~~~~~~l~~~~  645 (740)
                       .+..+++|+.++
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             234456665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=1.2e-06  Score=78.78  Aligned_cols=86  Identities=7%  Similarity=0.085  Sum_probs=56.2

Q ss_pred             CCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhcc---CCCCcEEEccCcc-cccCCCCCCccc
Q 038858           57 PSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS---MPFLKYLSLSYFT-FGTNSSRILDQG  132 (740)
Q Consensus        57 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~---l~~L~~L~Ls~~~-~~~~~~~~~~~~  132 (740)
                      .+|++||+++|.+++. ....+..+++|++|+|++|. .+++.....++..   +++|++|++++|. +++   .-.. .
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~-~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD---~Gl~-~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCH-YIEDGCLERLSQLENLQKSMLEMEIISCGNVTD---KGII-A  134 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCT-TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH---HHHH-H
T ss_pred             ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCC-ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH---HHHH-H
Confidence            3578888888876643 22336778888888888875 3566666666651   2468888888874 441   1111 4


Q ss_pred             cCCCCCCCEEEccCCc
Q 038858          133 LCPLVHLQELHMANND  148 (740)
Q Consensus       133 l~~l~~L~~L~L~~n~  148 (740)
                      +..+++|++|++++|.
T Consensus       135 L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGGCTTCCEEEEESCT
T ss_pred             HhcCCCCCEEECCCCC
Confidence            5667888888888875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.41  E-value=4.1e-05  Score=70.08  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=37.7

Q ss_pred             ccCCCcCcEEeCcCCcCCCc----cchhccCcCCCcEEECCCC---cCCc----cCchhhhcCCCCCEEEccCCcc
Q 038858          563 IGNLTRIQTLNLSHNNLTGT----ILSTFTNLRHIESLDLYHN---KLNG----KIPCQLVELNALVVFSVAYNNL  627 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N---~l~~----~~~~~~~~l~~L~~L~l~~N~l  627 (740)
                      +..-+.|++|+|++|.|...    +.+++..-+.|++|+|++|   .+..    .+.+.+...++|+.|+++.|.+
T Consensus        94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            33445677777777766642    2244555666777777654   3332    2334455667777777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.20  E-value=0.00013  Score=66.87  Aligned_cols=116  Identities=8%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             ccccCcEEEcccc-ccccc----ccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc-
Q 038858          485 GLLRLSHLILAHN-NLEGE----VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD-  558 (740)
Q Consensus       485 ~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-  558 (740)
                      +-+.|++|+|++| .+...    +...+..-+.|+.|+|++|.+.+.....+..    .++.-..|+.|+|++|.|... 
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~----aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE----LIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH----HHHHCSSCCEEECCSSBCCHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH----HHhcCCccCeEecCCCcCCHHH
Confidence            3456667777664 55421    2344555667777777777776433222221    334456788888888887642 


Q ss_pred             ---CCcCccCCCcCcEEeCcCCc---CCC----ccchhccCcCCCcEEECCCCcCC
Q 038858          559 ---IPPQIGNLTRIQTLNLSHNN---LTG----TILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       559 ---~~~~~~~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                         +.+++..-+.|++|+|++|.   +..    .+...+..-++|+.|+++.|.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               22455666779999998763   332    23456777899999999988764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.71  E-value=0.003  Score=53.90  Aligned_cols=56  Identities=21%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             eEEccCcccc-ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          547 GIDLSCNKLI-GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       547 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 23333222  24666666666666666666666666666666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	740
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 5e-17
 Identities = 58/290 (20%), Positives = 107/290 (36%), Gaps = 23/290 (7%)

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
           ++P        LLD+ NN        +  + L +L +  +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE 392
            L LS N L  E+PE +      L +       +   +F+    +  +  L         
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSG 140

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
               +      L  + + + N++  IPQ  G    L  + +  N +      +   L++L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 453 QILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQ 512
             LG+S N+IS      L+                 L  L L +N L  +VP  L     
Sbjct: 198 AKLGLSFNSISAVDNGSLANTP-------------HLRELHLNNNKLV-KVPGGLADHKY 243

Query: 513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL-IGDIPP 561
           +Q++ L +N +  +    F     + +   +  SG+ L  N +   +I P
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTK--KASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 6e-14
 Identities = 55/290 (18%), Positives = 105/290 (36%), Gaps = 32/290 (11%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF 390
           L+++  S+  L  ++P+ L     +  +L L NN +         NL  L  L+L +N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 391 VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGN----------LTGLQYIIIPENHLEG 440
            +  P + +  + LE L+L+ N L     +              +T ++  +    +   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLE 500
            + +    L S  I   +   +       ++   +  +IP  +     L+ L L  N + 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT 184

Query: 501 GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP 560
                 L GLN L  L LS N +  +      NT       L+         N  +  +P
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN---------NNKLVKVP 235

Query: 561 PQIGNLTRIQTLNLSHNNLTGTILSTF------TNLRHIESLDLYHNKLN 604
             + +   IQ + L +NN++    + F      T       + L+ N + 
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 1e-13
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 24/247 (9%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
           ++P+ L        L L NN ++        NL  L  +I+  N +    P AF  L  L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 453 QILGISDNNISGSLPS--------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLE--GE 502
           + L +S N +               +  N +        +GL ++  + L  N L+  G 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 503 VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562
                 G+ +L  + ++D  +  +      +           L+ + L  NK+       
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPS-----------LTELHLDGNKITKVDAAS 190

Query: 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
           +  L  +  L LS N+++     +  N  H+  L L +NKL  K+P  L +   + V  +
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 249

Query: 623 AYNNLSG 629
             NN+S 
Sbjct: 250 HNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 47/265 (17%), Positives = 85/265 (32%), Gaps = 16/265 (6%)

Query: 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168
           P    L L         + I D     L +L  L + NN +    P   A +  L  L +
Sbjct: 31  PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 169 SSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTF-PKFL 227
           S NQL       P  L       N       S+     Q+  + L +             
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 228 HHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
               KL  + ++   +    P  L  +   L  L L  + +       +    +L  L +
Sbjct: 147 QGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG---- 343
           S N+             P L   +++ N L   +P    +  ++Q++ L NN+++     
Sbjct: 203 SFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 344 -EIPEHLAIGCVNLEILVLSNNNLE 367
              P        +   + L +N ++
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 28/251 (11%)

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
            L  +  ++  L  K+P+ L        + +  N +       F  L +L  L       
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTL------- 60

Query: 463 SGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNK 522
                  L  N+++   P     L++L  L L+ N L+            LQ L + +N+
Sbjct: 61  ------ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENE 111

Query: 523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT 582
           +  +    F+         L        +  K  G        + ++  + ++  N+T  
Sbjct: 112 ITKVRKSVFNGLNQMIVVEL------GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165

Query: 583 ILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFN 642
                 +L     L L  NK+       L  LN L    +++N++S              
Sbjct: 166 PQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 643 ESNYKGNPFLC 653
           E +   N  + 
Sbjct: 223 ELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 39/246 (15%), Positives = 72/246 (29%), Gaps = 15/246 (6%)

Query: 2   GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
           G F +L  L  +     +I   +         LE L L  + L   L + +      L+ 
Sbjct: 49  GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRV 107

Query: 62  LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF 121
                 KV                 L+                  +  F     LSY   
Sbjct: 108 HENEITKV----------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 122 GTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP 181
              +   + QGL P   L ELH+  N +       L  + +L  L +S N ++   + S 
Sbjct: 158 ADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

Query: 182 LILDAYN--NEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLS 239
                    +  N ++ +     A +  ++ + L +     +    F       +    S
Sbjct: 216 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 240 HIKMNG 245
            + +  
Sbjct: 276 GVSLFS 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 71/372 (19%), Positives = 130/372 (34%), Gaps = 46/372 (12%)

Query: 285 LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE 344
             +   N    +     D + +L +  + + ++DG        +N L  ++ SNN LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 345 IPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSL 404
            P       V++ +      ++       N     L    + D   ++ +       LS 
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 405 EGLHL------------NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
             +               +        + L NLT L+ + I  N           +L +L
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNL 199

Query: 453 QILGISDNNISGSLP-------SYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV 505
           + L  ++N IS   P         LS N         +  L  L+ L LA+N +    P 
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP- 258

Query: 506 QLCGLNQLQLLDLSDNKLHGLIP------------PCFDNTALHERRVLSLLSGIDLSCN 553
            L GL +L  L L  N++  + P                   +     L  L+ + L  N
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 554 KLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE 613
            +    P  + +LT++Q L  ++N ++   +S+  NL +I  L   HN+++   P  L  
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 371

Query: 614 LNALVVFSVAYN 625
           L  +    +   
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.1 bits (178), Expect = 2e-14
 Identities = 70/344 (20%), Positives = 123/344 (35%), Gaps = 34/344 (9%)

Query: 131 QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNE 190
            G+  L +L +++ +NN L    P  L N+T L  + +++NQ+      + L        
Sbjct: 60  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 191 INAEITESHSLTAPNFQLKSLSLSSG--------------YEDGVTFPKFLHHQNKLEDV 236
            N +IT+   L       +    S+                         L     L  +
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 237 DLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRI 296
           +   I  N      +L   T LESL   N+ ++     P+    +L  L ++ N  +   
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD-- 233

Query: 297 PAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNL 356
              +   L +L+  +++ N +    P     +  L  L L  N ++   P        N 
Sbjct: 234 IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN- 289

Query: 357 EILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG 416
               L  N  +    S   NL  L++L L  N+  +  P  +S    L+ L   NN +S 
Sbjct: 290 ----LELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 417 KIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDN 460
                L NLT + ++    N +    P     L  +  LG++D 
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.0 bits (170), Expect = 2e-13
 Identities = 74/378 (19%), Positives = 129/378 (34%), Gaps = 46/378 (12%)

Query: 207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVND 266
           Q+ +L        G+     + + N L  ++ S+ ++    P   L+N TKL    ++ +
Sbjct: 45  QVTTLQADR---LGIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLV--DILMN 96

Query: 267 SLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFG 326
           +       P+ +  +L  L + NN      P +    L  L   + +++ +      +  
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 327 NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLE 386
                         L             N           +    S    LT L  L+  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSN-----------KVSDISVLAKLTNLESLIAT 205

Query: 387 DNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAF 446
           +N   +  P  +    +L+ L LN N L       L +LT L  + +  N +    P   
Sbjct: 206 NNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L 259

Query: 447 CQLDSLQILGISDNNISGSLPSYLSYNRLNGSI-------PDRIDGLLRLSHLILAHNNL 499
             L  L  L +  N IS   P        N  +          I  L  L++L L  NN+
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 500 EGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDI 559
               P  +  L +LQ L  ++NK+         N        L+ ++ +    N++    
Sbjct: 320 SDISP--VSSLTKLQRLFFANNKVSD--VSSLAN--------LTNINWLSAGHNQISDLT 367

Query: 560 PPQIGNLTRIQTLNLSHN 577
           P  + NLTRI  L L+  
Sbjct: 368 P--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 63/368 (17%), Positives = 122/368 (33%), Gaps = 50/368 (13%)

Query: 1   MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQ----SIASIF 56
           +   ++L  +   +N LT+I       L N T L  + ++ + +          ++  + 
Sbjct: 62  VEYLNNLTQINFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 116

Query: 57  PSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSL 116
                ++ ID   N    ++      ++  +   +   +L           +  L  L+ 
Sbjct: 117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 117 SYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGS 176
                 +++       L  L +L+ L   NN +    P     +T+L  L ++ NQL   
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDI 234

Query: 177 ISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDV 236
            + + L             T    L   N Q+ +L+              L    KL ++
Sbjct: 235 GTLASL-------------TNLTDLDLANNQISNLA-------------PLSGLTKLTEL 268

Query: 237 DLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRI 296
            L   +++   P   L   T LE      +        PI + K+L  L +  NN     
Sbjct: 269 KLGANQISNISPLAGLTALTNLE-----LNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 297 PAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNL 356
           P      L  L     + N +  S  SS  N+  +  L   +N ++   P         +
Sbjct: 324 PVSS---LTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA---NLTRI 375

Query: 357 EILVLSNN 364
             L L++ 
Sbjct: 376 TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 57/378 (15%), Positives = 115/378 (30%), Gaps = 37/378 (9%)

Query: 59  LKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSY 118
           L  ++ +     G+    G  +  +L  ++ +   +            ++  L  + ++ 
Sbjct: 43  LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-----KNLTKLVDILMNN 97

Query: 119 FTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSIS 178
                                        +L G   +           ++++       S
Sbjct: 98  NQI----------------ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 179 SSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDL 238
           ++   + A +   + +     +       L +L+     +        +    KL +++ 
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 239 SHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPA 298
                N       L   T L+ LSL  + L       + S  +L  LD++NN      P 
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAPL 259

Query: 299 EIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358
                L  L+   +  N +    P     +  L  L     +              NL  
Sbjct: 260 S---GLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI 418
           L L  NN+     S   +LTKL  L   +N        SL+   ++  L   +N +S   
Sbjct: 312 LTLYFNNISD--ISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLT 367

Query: 419 PQWLGNLTGLQYIIIPEN 436
           P  L NLT +  + + + 
Sbjct: 368 P--LANLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 7e-15
 Identities = 54/263 (20%), Positives = 92/263 (34%), Gaps = 16/263 (6%)

Query: 274 LPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQI 333
           +P+    + + + +  N     +PA       +L+   +  N L     ++F  +  L+ 
Sbjct: 26  VPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 334 LDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE 393
           LDLS+N     +      G   L  L L    L+         L  L +L L+DN     
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
              +     +L  L L+ N +S    +    L  L  +++ +N +    P AF  L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 454 ILGISDNNISGSLPS-----------YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGE 502
            L +  NN+S                 L+ N        R      L     + + +   
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCS 263

Query: 503 VPVQLCGLNQLQLLDLSDNKLHG 525
           +P +L G     L  L+ N L G
Sbjct: 264 LPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 4e-13
 Identities = 59/280 (21%), Positives = 92/280 (32%), Gaps = 25/280 (8%)

Query: 302 DILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVL 361
            I  +     +  N +     +SF     L IL L +N L            +  ++ + 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 362 SNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQW 421
            N  L     +    L +L  L L+     E  P       +L+ L+L +N L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 422 LGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD 481
             +L  L ++ +  N +      AF  L SL                 L  NR+    P 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR-------------LLLHQNRVAHVHPH 195

Query: 482 RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRV 541
               L RL  L L  NNL       L  L  LQ L L+DN                 R +
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA---------RPL 246

Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTG 581
            + L     S +++   +P ++          L+ N+L G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRLAGR---DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 48/267 (17%), Positives = 82/267 (30%), Gaps = 23/267 (8%)

Query: 407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSL 466
                  L   +P  +   +  Q I +  N +      +F    +L IL +  N ++   
Sbjct: 16  TSCPQQGLQ-AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 467 PSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGL 526
            +  +   L   +                +  L    P    GL +L  L L    L  L
Sbjct: 73  AAAFTGLALLEQLDLSD------------NAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILST 586
            P  F           + L  + L  N L         +L  +  L L  N ++      
Sbjct: 121 GPGLFRGL--------AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 587 FTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNY 646
           F  L  ++ L L+ N++    P    +L  L+   +  NNLS    E             
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 647 KGNPFLCGLPLPICRSPVTMLEASTSN 673
             NP++C        + +     S+S 
Sbjct: 233 NDNPWVCDCRARPLWAWLQKFRGSSSE 259

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 46/279 (16%), Positives = 86/279 (30%), Gaps = 28/279 (10%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
             Q + +  N +            +L  L + SN L    +++   L        ++  +
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
             S+                      P   H   +L  + L    +    P         
Sbjct: 93  LRSV---------------------DPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAA 130

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
           L+ L L +++L            +L  L +  N     +P      L SL    +  N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV 189

Query: 318 DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL 377
               P +F ++  L  L L  N+L+  +P         L+ L L++N       ++    
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPL-W 247

Query: 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG 416
             L       +     +PQ L+     +   L  N+L G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 44/296 (14%), Positives = 93/296 (31%), Gaps = 36/296 (12%)

Query: 49  LQSI-ASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS 107
           LQ++   I  + + + +   +++ V  +  F   ++L  L ++      +    +I  A+
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLH------SNVLARIDAAA 75

Query: 108 MPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLD 167
              L  L     +       +       L  L  LH+    L+   P     + +L+ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 168 VSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFL 227
           +  N L      +                           L  L L       V    F 
Sbjct: 136 LQDNALQALPDDTF---------------------RDLGNLTHLFLHGNRISSVPERAFR 174

Query: 228 HHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
              + L+ + L   ++    P+   +    +      N+  A P    +   ++L+ L +
Sbjct: 175 GLHS-LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRL 232

Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343
           ++N +          +   L  F  S + +  S+P          +  L+ N L G
Sbjct: 233 NDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 73/303 (24%), Positives = 112/303 (36%), Gaps = 48/303 (15%)

Query: 372 SKNFNLTKLSWLLLEDNHF--VEEIPQSLSKCLSLEGLHL-NNNNLSGKIPQWLGNLTGL 428
             +    +++ L L   +      IP SL+    L  L++   NNL G IP  +  LT L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 429 QYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPS-----------YLSYNRLNG 477
            Y+ I   ++ G IP    Q+ +L  L  S N +SG+LP                NR++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537
           +IPD      +L   +    N              L  +DLS N L G     F +    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLD 597
           ++                +     ++G    +  L+L +N + GT+    T L+ + SL+
Sbjct: 224 QKIH---------LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 598 LYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL 657
           +  N L G+IP                                F+ S Y  N  LCG PL
Sbjct: 275 VSFNNLCGEIP-------------------------QGGNLQRFDVSAYANNKCLCGSPL 309

Query: 658 PIC 660
           P C
Sbjct: 310 PAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.5 bits (158), Expect = 4e-12
 Identities = 50/262 (19%), Positives = 88/262 (33%), Gaps = 39/262 (14%)

Query: 307 LSSFNISMNALDG--SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNN 364
           +++ ++S   L     IPSS  N+ +L  L +   +               L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 365 NLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGN 424
           N+ G +      +  L  L    N     +P S+S   +L G+  + N +SG IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 425 LTGLQYIIIPEN----------------------------------HLEGPIPVAFCQLD 450
            + L   +                                        +          +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 451 SLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGL 510
           SL                 L  NR+ G++P  +  L  L  L ++ NNL GE+P Q   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 511 NQLQLLDLSDNKLH--GLIPPC 530
            +  +   ++NK      +P C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 232 KLEDVDLSHIKMNGEFP-NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNN 290
           ++ ++DLS + +   +P    L N   L  L +   +       P  +  +        +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 291 NFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA 350
                   +    + +L + + S NAL G++P S  ++  L  +    N ++G IP+   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLED----------------------N 388
                   + +S N L G +     NL      L  +                       
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 389 HFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQ 448
           + +      +    +L GL L NN + G +PQ L  L  L  + +  N+L G IP     
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 449 LDSLQILGISDNNISGSLP 467
           L    +   ++N      P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 60/285 (21%), Positives = 95/285 (33%), Gaps = 24/285 (8%)

Query: 163 LRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT 222
           +  LD+S   L         + +                      L  L +         
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPY-------------------LNFLYIGGINNLVGP 92

Query: 223 FPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL 282
            P  +    +L  + ++H  ++G  P++L +  T +      N +L+G     I S  +L
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNL 151

Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
             +    N   G IP   G      +S  IS N L G IP +F N+N   +    N    
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 343 GEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL 402
                  +              N       K      L+ L L +N     +PQ L++  
Sbjct: 212 DASVLFGSDKNTQKIH---LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447
            L  L+++ NNL G+IPQ  GNL          N      P+  C
Sbjct: 269 FLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 143 HMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSS 180
            + NN + G+LP  L  +  L +L+VS N L G I   
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 48/244 (19%), Positives = 82/244 (33%), Gaps = 5/244 (2%)

Query: 79  PHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVH 138
               +L YL+     I    + +  I  ++  L  L   Y T    S  I D        
Sbjct: 70  SSLANLPYLNFL--YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KT 126

Query: 139 LQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITES 198
           L  L  + N L G+LP  ++++ +L  +    N+++G+I  S          +       
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 199 HSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL 258
                P F   +L+      + +     +   +      +   K +  F    +  +  L
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
             L L N+ + G     +   K L  L+VS NN  G IP   G  L        + N   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCL 304

Query: 319 GSIP 322
              P
Sbjct: 305 CGSP 308

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 19/282 (6%)

Query: 285 LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE 344
           LD++  N    +   +  +   + +F    + +D  +   F     +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 345 IPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSL 404
               +   C  L+ L L    L   + +     + L  L L       E           
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG 464
               LN +       + +          I + +L G          S  +    +     
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH-- 179

Query: 465 SLPSYLSYNRLNGSIPDRIDGLLRLSHLILAH-NNLEGEVPVQLCGLNQLQLLDLSDNKL 523
                     L          L  L HL L+   ++  E  ++L  +  L+ L +     
Sbjct: 180 --LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG--- 234

Query: 524 HGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN 565
                    +  L    +   L  + ++C+       P IGN
Sbjct: 235 ------IVPDGTLQ--LLKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 17/265 (6%)

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV 391
           Q LDL+  +L  ++   L      +       + ++  +   +F+  ++  + L ++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 59

Query: 392 EE-IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLD 450
              +   LS+C  L+ L L    LS  I   L   + L  + +          +      
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 451 SLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGL 510
             ++  ++ +        ++     + S       L      +   +             
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 511 NQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS-CNKLIGDIPPQIGNLTRI 569
             L    +  N                     + L  + LS C  +I +   ++G +  +
Sbjct: 180 LDLSDSVMLKNDCFQEFFQL------------NYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 570 QTLNLSHNNLTGTILSTFTNLRHIE 594
           +TL +      GT+      L H++
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 12/241 (4%)

Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGR 295
           +DL+   ++ +    LL                         S   ++ +D+SN+  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 296 IPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNH-LTGEIPEHLAIGCV 354
               I      L + ++    L   I ++    + L  L+LS     +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 355 NLEILVLSNNNLEGHMFSKNFNLTKLSW-------LLLEDNHFVEEIPQSLSKCLSLEGL 407
            L+ L LS          +                   ++    +           +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 408 HLNNNNLSGKIPQWLGNLTGLQYIIIPE-NHLEGPIPVAFCQLDSLQILGISDNNISGSL 466
             ++  L     Q    L  LQ++ +     +     +   ++ +L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 467 P 467
            
Sbjct: 242 Q 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLN 573
           Q LDL+   LH  +            R+LS            +     +  +  R+Q ++
Sbjct: 3   QTLDLTGKNLHPDVTG----------RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 52

Query: 574 LSHNNLTGTILSTF-TNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626
           LS++ +  + L    +    +++L L   +L+  I   L + + LV  +++  +
Sbjct: 53  LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 13/259 (5%)

Query: 207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVND 266
            + +      + D      F     +++ +DLS+  +     + +L   +KL++LSL   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPF--RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 267 SLAGPFRLPIHSHKSLRLLDV-SNNNFQGRIPAEIGDILPSLSSFNI------SMNALDG 319
            L+ P    +  + +L  L++   + F       +      L   N+      +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTK 379
           ++      +  L +     N    ++   +      + + +  +  L+   F + F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 380 LSWLLLED-NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438
           L  L L      + E    L +  +L+ L +      G +      L  LQ   I  +H 
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHF 258

Query: 439 EGPIPVAFCQLDSLQILGI 457
                       + +I GI
Sbjct: 259 TTIARPTIGNKKNQEIWGI 277

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 22/224 (9%)

Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335
           +    S   ++    N    +P ++       +  ++S N L     ++      L  L+
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP 395
           L    LT    +      + +   +  ++N    +      L  L+ L +  N       
Sbjct: 62  LDRAELTKLQVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455
            +L     L+ L+L  N L    P  L     L+ + +  N+L          L++L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
            + +N++               +IP    G   L    L  N  
Sbjct: 178 LLQENSLY--------------TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 49/206 (23%), Positives = 69/206 (33%), Gaps = 8/206 (3%)

Query: 256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315
           +K+ S   VN        LP    K   +L +S N       A +      L+  N    
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN---- 61

Query: 316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHL-AIGCVNLEILVLSNNNLEGHMFSKN 374
            LD +  +       L +L   +          L       L +L +S N L        
Sbjct: 62  -LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 375 FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
             L +L  L L+ N      P  L+    LE L L NNNL+      L  L  L  +++ 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 435 ENHLEGPIPVAFCQLDSLQILGISDN 460
           EN L   IP  F     L    +  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 28/202 (13%)

Query: 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
               LH++ N L       L   T L  L++   +                         
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------------------------- 66

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
             +    +  L  L       + +     L        V           P   L    +
Sbjct: 67  -LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
           L+ L L  + L       +     L  L ++NNN        +   L +L +  +  N+ 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG-LENLDTLLLQENS- 183

Query: 318 DGSIPSSFGNMNFLQILDLSNN 339
             +IP  F   + L    L  N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 42/207 (20%), Positives = 68/207 (32%), Gaps = 17/207 (8%)

Query: 460 NNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLS 519
           + ++  L        L  ++P  +        L L+ N L       L    +L  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 520 DNKLHG-------------LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566
             +L                +      +     + L  L+ +D+S N+L       +  L
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626
             +Q L L  N L        T    +E L L +N L       L  L  L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 627 LSGKIPEMTTQFATFNESNYKGNPFLC 653
           L   IP+          +   GNP+LC
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPWLC 209

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 3e-06
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG----SIPSSFGNMNFLQILDL 336
            ++ LD+          AE+  +L       +    L       I S+      L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 337 SNNHLTGEIPEHLAIG----CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDN 388
            +N L       +  G       ++ L L N  L G       +  +    L E +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 118

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 6e-06
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG----HMFSKNFNLTKLSWLLLE 386
           +Q LD+    L+      L       +++ L +  L       + S       L+ L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 387 DNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQW 421
            N   +     + + L      +   +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 19/189 (10%), Positives = 48/189 (25%), Gaps = 5/189 (2%)

Query: 545 LSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNNLTG----TILSTFTNLRHIESLDLY 599
           +  +D+ C +L      ++   L + Q + L    LT      I S       +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 600 HNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPI 659
            N+L       +++        +   +L              +            L   +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 660 CRSPVTMLEASTSNEGDDNLIDMDCFFNTFTTSYVIVIFGIVIILYVNPYWRRRWFYLVE 719
                  L      +    L  +   + + + +    +  ++               + E
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 720 MWIASCYYF 728
             +      
Sbjct: 184 AGVRVLCQG 192

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 322 PSSFGNMNFLQILDLSNNHLTGEIPEHLA---IGCVNLEILVLSNNNLEGHMFSK----- 373
                  + L++L L++  ++      LA   +   +L  L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 374 NFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
                 L  L+L D ++ EE+         L+ L  +  +L 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 58/456 (12%), Positives = 117/456 (25%), Gaps = 25/456 (5%)

Query: 83  SLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQEL 142
            ++ LD+   C  L+ +    +   +   + + L          + +   L     L EL
Sbjct: 3   DIQSLDIQ--CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 143 HMANNDLRGSLPWCLA-----NMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITE 197
           ++ +N+L      C+          ++ L + +  LTG+              +      
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 198 SHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK 257
            + L     QL    L                 +      L+ +         L  +N  
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
           +    +                  L    V+++N +               +   +    
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 318 DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL 377
            G      G ++    L        G   +     C  L                 +   
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENH 437
             L   LLE    +E +        +    H ++     +    L               
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 438 LEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHN 497
            +G           L++L ++D ++S S  S         S+   +     L  L L++N
Sbjct: 361 CQGL----GQPGSVLRVLWLADCDVSDSSCS---------SLAATLLANHSLRELDLSNN 407

Query: 498 NLEGEVPVQLCG-----LNQLQLLDLSDNKLHGLIP 528
            L     +QL          L+ L L D      + 
Sbjct: 408 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 54/470 (11%), Positives = 119/470 (25%), Gaps = 40/470 (8%)

Query: 162 SLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSS---GYE 218
            +++LD+   +L+ +  +                     L     Q + + L        
Sbjct: 3   DIQSLDIQCEELSDARWAE--------------------LLPLLQQCQVVRLDDCGLTEA 42

Query: 219 DGVTFPKFLHHQNKLEDVDLSHIKMNGE----FPNWLLENNTKLESLSLVNDSLAGPFRL 274
                   L     L +++L   ++           L   + K++ LSL N  L G    
Sbjct: 43  RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 275 PIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQIL 334
            + S           +     +      +L                   S    +   + 
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

Query: 335 DLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLE-DNHFVEE 393
            +       +             + VL     +     +   L           +     
Sbjct: 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 222

Query: 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
             ++  + L+L    L +  ++   P  L   + L+ + I E  +        C++   +
Sbjct: 223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 282

Query: 454 ILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQL 513
                 +     L    +       +                           L     L
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342

Query: 514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL----IGDIPPQIGNLTRI 569
             L +S+N+L                 VL +L    L+   +       +   +     +
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVL---WLADCDVSDSSCSSLAATLLANHSL 399

Query: 570 QTLNLSHNNLTGTILSTF-----TNLRHIESLDLYHNKLNGKIPCQLVEL 614
           + L+LS+N L    +             +E L LY    + ++  +L  L
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 354 VNLEILVLSNNNLEGHMFSKNF-NLTKLSWLLLEDNHF----VEEIPQSLSKCLSLEGLH 408
           ++++ L +    L    +++    L +   + L+D        ++I  +L    +L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 409 LNNNNLSGKIPQWLGNL 425
           L +N L       +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 52/342 (15%), Positives = 95/342 (27%), Gaps = 45/342 (13%)

Query: 273 RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332
           RL     +    L+++N          + ++ P L S   S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE 392
           + + +   L+   P    +G  N ++  L        +   + +   L  L         
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL--- 449
               +       E  +L            L  L  L   +         +          
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 450 ------------------DSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSH 491
                                       +N    LP             +   GL  L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
            +   N    E+         L+ L++S+NKL   +P                L  +  S
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR-----------LERLIAS 312

Query: 552 CNKLIGDIPPQIGNLTRIQTLNLSHNNLTG--TILSTFTNLR 591
            N L  ++P    NL   + L++ +N L     I  +  +LR
Sbjct: 313 FNHL-AEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 52/324 (16%), Positives = 93/324 (28%), Gaps = 24/324 (7%)

Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN 365
                 ++   L  S+P    +   L+ L  S N LT E+PE       +L+ L++ NNN
Sbjct: 39  QAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQ----SLKSLLVDNNN 89

Query: 366 LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL 425
           L+               L        +       +  S   +   +NN   K+P    +L
Sbjct: 90  LKALSDLPP-------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142

Query: 426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDG 485
             +         L     + F          +            +            +  
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202

Query: 486 LLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL 545
           L  L+ +   +N L+    +           +   +         F + + +    LS L
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262

Query: 546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG 605
                  N    +I         ++ LN+S+N L   + +    L     L    N L  
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA- 317

Query: 606 KIPCQLVELNALVVFSVAYNNLSG 629
           ++P        L    V YN L  
Sbjct: 318 EVPE---LPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 9/146 (6%)

Query: 223 FPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL 282
              FL       ++  +   +        + +N   +   L            I S  S 
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
              ++   N        + D+ PSL   N+S N L   +P+       L+ L  S NHL 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 317

Query: 343 GEIPEHLAIGCVNLEILVLSNNNLEG 368
            E+PE       NL+ L +  N L  
Sbjct: 318 -EVPELPQ----NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH 369
               +NA    I S       L+ L++SNN L  E+P         LE L+ S N+L   
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP----RLERLIASFNHLA-- 317

Query: 370 MFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN 411
                     L  L +E N    E P       S+E L +N+
Sbjct: 318 --EVPELPQNLKQLHVEYNPL-REFPDIPE---SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 52/331 (15%), Positives = 93/331 (28%), Gaps = 24/331 (7%)

Query: 134 CPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLIL---DAYNNE 190
           C      EL + N  L  SLP    +   L +L  S N LT  +   P  L      NN 
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 191 INAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNW 250
           + A       L         L      ++           N L+ +      +       
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 251 LLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSF 310
                           ++                L+                 LP L++ 
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 311 NISMNALDGSIPSSFG-------NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
               N L                +     + +L  +    ++ E++  G   L   +   
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 364 NNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLG 423
           N     + S       L  L + +N    E+P        LE L  + N+L+ ++P+   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP---RLERLIASFNHLA-EVPELPQ 324

Query: 424 NLTGLQYIIIPENHLEGPIPVAFCQLDSLQI 454
           N   L+ + +  N L    P     ++ L++
Sbjct: 325 N---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 228 HHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
                 +  +L       +    +    ++L       ++ +   R       SL  L+V
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
           SNN        E+  + P L     S N L   +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 348 HLAIGCVNLEILVLSN 363
                  ++E L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 7e-06
 Identities = 24/217 (11%), Positives = 51/217 (23%), Gaps = 9/217 (4%)

Query: 393 EIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSL 452
           EIP  L +  +   L      L             L+ I I +N +   I          
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 453 QILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQ 512
                 +   +    +  ++  L       I          +   +   +V + +     
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 513 LQLLDLSDNKLHG-------LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN 565
           +  ++ +             L                 L        N L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK 602
            +    L++S   +         NL+ + +   Y+ K
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKL 603
            SG+  + +  + D    +     +  L + +      + L     L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 604 NGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL 657
               P        L   ++++N L   +   T Q  +  E    GNP  C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 19/119 (15%), Positives = 30/119 (25%)

Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTK 379
                      L  L + N      +      G   L  L +  + L            +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438
           LS L L  N       +++      E +   N        +WL          +PE  L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 323 SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSW 382
           + + N    + LDL    +   + E+L       + +  S+N +          L +L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 383 LLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG----KIPQWLGNLTGLQYIIIPENHL 438
           LL+ +N               L  L L NN+L           L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 439 EGPIPVAFCQLDSLQIL 455
           +        ++  +++L
Sbjct: 128 KHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVF 620
            Q  N  R + L+L    +   I +    L   +++D   N++          L  L   
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 621 SVAYNNLSGKIPEMTTQF 638
            V  N +      +    
Sbjct: 69  LVNNNRICRIGEGLDQAL 86

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 3/115 (2%)

Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
                 +DL   K I  I      L +   ++ S N +    L  F  LR +++L + +N
Sbjct: 17  AVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73

Query: 602 KLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656
           ++          L  L    +  N+L                        +    
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 469 YLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP 528
           +L++  L  ++   ++ LL ++HL L+HN L    P  L  L  L++L  SDN L  +  
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 60

Query: 529 PCFDNTALHERRVLSLLSGIDLSCNKLIG-DIPPQIGNLTRIQTLNLSHNNLTG------ 581
                              + L  N+L        + +  R+  LNL  N+L        
Sbjct: 61  VANLPRLQE----------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 582 TILSTFTNLRHI 593
            +     ++  I
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
           L LAH +L   V   L  L  +  LDLS N+L  L P       L               
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL-----------Q 49

Query: 552 CNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT-ILSTFTNLRHIESLDLYHNKLNGK 606
            +    +    + NL R+Q L L +N L  +  +    +   +  L+L  N L  +
Sbjct: 50  ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 275 PIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQIL 334
            +     +  LD+S+N  +   PA    +        +  +           N+  LQ L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALENVDGVANLPRLQEL 70

Query: 335 DLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
            L NN L         + C  L +L L  N+L  
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 33/135 (24%)

Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHM--FSKNFNLTKLSWLLLEDNH 389
           ++L L++  LT  +  HL    + +  L LS+N L       +    L  L       + 
Sbjct: 1   RVLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-----SD 52

Query: 390 FVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL 449
              E    ++    L+ L L NN L                                   
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQ-----------------------SAAIQPLVSC 89

Query: 450 DSLQILGISDNNISG 464
             L +L +  N++  
Sbjct: 90  PRLVLLNLQGNSLCQ 104

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTK 379
            IP           L L++N L     + L     +L  L L  N L G   +     + 
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE 439
           +  L L +N   E   +       L+ L+L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 440 GPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRL 475
               +     + L+   ++        PS +   ++
Sbjct: 140 CNCHL-AWFAEWLRKKSLNGGAARCGAPSKVRDVQI 174

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 27/193 (13%), Positives = 66/193 (34%), Gaps = 13/193 (6%)

Query: 407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSL 466
            +L   +++  + Q    L  +  II   + ++    + +  L ++  L ++ N ++   
Sbjct: 29  DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFLNGNKLTDI- 83

Query: 467 PSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGL 526
                    N      +         + +  +L+    + L       +  L        
Sbjct: 84  -----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILST 586
           +    +                    +  I DI P +  LT++Q L LS N+++   L  
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRA 195

Query: 587 FTNLRHIESLDLY 599
              L++++ L+L+
Sbjct: 196 LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 35/229 (15%)

Query: 296 IPAEIGDILP-----SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA 350
           +P  I  I            N+   ++  ++  +   +N +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
               N+  L L+ N L       N       +L       +  +              L+
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK------SLS 118

Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
             +        L +L  L+ + +  N +         +L  L  L + DN IS  +P   
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--- 173

Query: 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLS 519
                       + GL +L +L L+ N++       L GL  L +L+L 
Sbjct: 174 ------------LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 42/330 (12%), Positives = 90/330 (27%), Gaps = 27/330 (8%)

Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIG---CVNLEILVLS 362
           SL    I+      S+ +     + ++ + LS N +  E    L+       +LEI   S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 363 NN---NLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP 419
           +     ++  +      L +      + +                    L+ +     + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 420 QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSI 479
                L       I     E  +         L+ +    N +        +        
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF----- 182

Query: 480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHER 539
             +   LL    ++      EG   + L GL   Q L    +           +      
Sbjct: 183 --QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK-VLDLQDNTFTHLGSSALAIAL 239

Query: 540 RVLSLLSGIDLSCNKLIGDIPPQIGN------LTRIQTLNLSHNNLTGTILST-----FT 588
           +    L  + L+   L       + +         +QTL L +N +    + T       
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 589 NLRHIESLDLYHNKLNGKIPCQLVELNALV 618
            +  +  L+L  N+   +    + E+  + 
Sbjct: 300 KMPDLLFLELNGNRF-SEEDDVVDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 36/339 (10%), Positives = 85/339 (25%), Gaps = 30/339 (8%)

Query: 6   SLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMI 65
           SL    +   +   +       L    +++ + L  +++     + ++    S K L + 
Sbjct: 9   SLKLDAITTEDEKSVF----AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 66  DCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNS 125
           +       R +          L     C  L+   L          + L           
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 126 SRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILD 185
              L              +A      ++     N   LR++    N+L            
Sbjct: 125 HLYLHNNGLGPQAGA--KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 186 AYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNG 245
             +  ++      + +     +   L   +  ++        +    L    L+    + 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 246 EFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP 305
                L  N+  L +      + A         +  L+ L +  N  +      +  ++ 
Sbjct: 243 PNLRELGLNDCLLSA----RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI- 297

Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE 344
                                 M  L  L+L+ N  + E
Sbjct: 298 -------------------DEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 50/355 (14%), Positives = 98/355 (27%), Gaps = 28/355 (7%)

Query: 205 NFQLKSLSLSS-GYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL---LENNTKLES 260
           + + KSL L +   ED  +    L   + ++++ LS   +  E   WL   + +   LE 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 261 LSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS 320
               +            + + L    +          ++      +       ++     
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 321 IPSSFGNMNFL-QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTK 379
                 N     Q        L        A     L  ++   N LE     +     +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE 439
              LL         I     + L LEGL          +                 +   
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-----------TFTHLGS 232

Query: 440 GPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
             + +A     +L+ LG++D  +S    + +                + L  L L +N +
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE-------NIGLQTLRLQYNEI 285

Query: 500 EGEVPVQLC-----GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGID 549
           E +    L       +  L  L+L+ N+         +   +   R    L  +D
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 340

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 29/203 (14%), Positives = 54/203 (26%), Gaps = 8/203 (3%)

Query: 327 NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLE 386
            +     +    +++T  + +        +  L      +          L  L  L L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 387 DNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAF 446
           DN   +  P      ++   L  N       I       T         +          
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 447 CQLDSLQI-LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV 505
             L      +         +   YLS      S    +  L +L+ L    N +    P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 506 QLCGLNQLQLLDLSDNKLHGLIP 528
            L  L  L  + L +N++  + P
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 15/225 (6%)

Query: 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435
            L     +    ++  + + Q+      +  L      ++    + +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495
           N +    P+      +   L  +      ++    S   L+ +     D         LA
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------VTPLA 126

Query: 496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKL 555
             +    + + L  +  +  L    N  +  I     +       +  L +         
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-- 184

Query: 556 IGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600
           I DI P + +L  +  ++L +N ++   +S   N  ++  + L +
Sbjct: 185 ISDISP-LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 30/229 (13%), Positives = 73/229 (31%), Gaps = 21/229 (9%)

Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEIN-AE 194
           L +  ++    +++  ++    A++  + TL      +T         ++      N   
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--------IEGVQYLNNLIG 67

Query: 195 ITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLEN 254
           +    +       LK+L+  +  E      K +     L+ +    +          L  
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 255 NTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISM 314
            + L+ L L  + +     L   ++     +  +  +    +          L++     
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----SKLTTLKADD 182

Query: 315 NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
           N +    P    ++  L  + L NN ++   P        NL I+ L+N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	740
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.23

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.5e-29  Score=257.70  Aligned_cols=260  Identities=33%  Similarity=0.537  Sum_probs=226.7

Q ss_pred             CCCCeEEccCCcccc--cCccccccCCCCCeEEccC-CcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccE
Q 038858          378 TKLSWLLLEDNHFVE--EIPQSLSKCLSLEGLHLNN-NNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI  454 (740)
Q Consensus       378 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  454 (740)
                      .+++.|+++++.+.+  .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            357778888887766  3677888899999999986 6788788888889999999999999998888888888899999


Q ss_pred             EeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcc-cEEeCCCccccCCCCCcccc
Q 038858          455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQL-QLLDLSDNKLHGLIPPCFDN  533 (740)
Q Consensus       455 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~  533 (740)
                      +++++|.+.+             .+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..
T Consensus       130 l~l~~N~~~~-------------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~  196 (313)
T d1ogqa_         130 LDFSYNALSG-------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             EECCSSEEES-------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             cccccccccc-------------cCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence            9999887653             566778889999999999999998888888888776 88999999999888877765


Q ss_pred             cccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc
Q 038858          534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE  613 (740)
Q Consensus       534 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  613 (740)
                               .....++++++...+.+|..+..+++|+.+++++|.+.+.++ .+..+++|+.|+|++|++++.+|+.+..
T Consensus       197 ---------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~  266 (313)
T d1ogqa_         197 ---------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             ---------CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ---------cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhC
Confidence                     245679999999999999999999999999999999987654 6888999999999999999999999999


Q ss_pred             CCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCCCCCC
Q 038858          614 LNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICR  661 (740)
Q Consensus       614 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~  661 (740)
                      +++|++|++++|+++|.+|+. ..+++|+.+++.||+.+|+.|++.|.
T Consensus       267 L~~L~~L~Ls~N~l~g~iP~~-~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCCEEECcCCcccccCCCc-ccCCCCCHHHhCCCccccCCCCCCCC
Confidence            999999999999999999974 78999999999999999998887773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.6e-26  Score=239.44  Aligned_cols=341  Identities=24%  Similarity=0.344  Sum_probs=160.6

Q ss_pred             CCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcE
Q 038858          230 QNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSS  309 (740)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  309 (740)
                      +.+|+.|+++++.++. +. . ++.+++|++|++++|++++..  .+..+++|++|++++|.+. .++. +. .+++|+.
T Consensus        43 l~~l~~L~l~~~~I~~-l~-g-l~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~-l~-~l~~L~~  114 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-ID-G-VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTG  114 (384)
T ss_dssp             HTTCCEEECCSSCCCC-CT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCCE
T ss_pred             hCCCCEEECCCCCCCC-cc-c-cccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc-cc-ccccccc
Confidence            3456666666665552 21 2 245556666666666555432  2555555666666655555 2221 22 2555555


Q ss_pred             EEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCc
Q 038858          310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNH  389 (740)
Q Consensus       310 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  389 (740)
                      |+++++.+++..+  ......+.......+.+. .+....................     ...+...+.........+.
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccc--cccccccccccccccccc-ccccccccccccccccccccch-----hhhhccccccccccccccc
Confidence            5555555543221  223344445555444443 1111111011111111111111     1111222333333333333


Q ss_pred             ccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCC
Q 038858          390 FVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY  469 (740)
Q Consensus       390 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  469 (740)
                      ..  ....+..+++++.+++++|.+++..+  ....++|++|++++|.+++.  ..+..+++|+.+++++|.+++     
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-----  255 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-----  255 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-----
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCC-----
Confidence            22  12334555666666666666554322  23445566666666665532  245555666666666665541     


Q ss_pred             CCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEE
Q 038858          470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGID  549 (740)
Q Consensus       470 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~  549 (740)
                               .+ .+..+++|++|+++++.+++..  .+..++.++.+++++|.+.+..  .+.        .++.++.|+
T Consensus       256 ---------~~-~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~--------~~~~l~~L~  313 (384)
T d2omza2         256 ---------LA-PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PIS--------NLKNLTYLT  313 (384)
T ss_dssp             ---------CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGG--------GCTTCSEEE
T ss_pred             ---------CC-cccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccc--------hhcccCeEE
Confidence                     11 1444556666666666555332  2445555666666665554321  111        134555566


Q ss_pred             ccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858          550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN  625 (740)
Q Consensus       550 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  625 (740)
                      +++|++++..  .+..+++|++|++++|++++  +..|.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       314 ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~--l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         314 LYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCCc--ccccCCCCCEEECCCCCCCC--ChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            6666555432  24555556666666665554  2245555566666666565554333  455555555555555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6.6e-25  Score=230.52  Aligned_cols=356  Identities=22%  Similarity=0.311  Sum_probs=266.5

Q ss_pred             EccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCc
Q 038858          237 DLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA  316 (740)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  316 (740)
                      .++...+++.+..   +.+.+|++|+++++.+++.  ..+..+++|++|++++|+++ .++. + ..+++|++|++++|.
T Consensus        28 ~l~~~~~~~~~~~---~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l-~~L~~L~~L~L~~n~   99 (384)
T d2omza2          28 VLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQ   99 (384)
T ss_dssp             HTTCSSTTSEECH---HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSC
T ss_pred             HhCCCCCCCccCH---HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-c-cCCcccccccccccc
Confidence            3445555555443   4568899999999998864  35778899999999999998 5553 3 348999999999999


Q ss_pred             CcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCcc
Q 038858          317 LDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQ  396 (740)
Q Consensus       317 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  396 (740)
                      +.+..  .++.+++|+.|+++++.++ .++...  ....+.......+.+.......................     ..
T Consensus       100 i~~i~--~l~~l~~L~~L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~  169 (384)
T d2omza2         100 IADIT--PLANLTNLTGLTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LK  169 (384)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CG
T ss_pred             ccccc--ccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccch-----hh
Confidence            98543  3889999999999999887 333332  35677777777777655433322222222222111111     12


Q ss_pred             ccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCC
Q 038858          397 SLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLN  476 (740)
Q Consensus       397 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~  476 (740)
                      .+...+.........+...  ....+..+++++.+++++|.+++..+  +..+++|++|++++|.++             
T Consensus       170 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-------------  232 (384)
T d2omza2         170 PLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-------------  232 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-------------
T ss_pred             hhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-------------
Confidence            3445555666666666543  34456678899999999999886644  456789999999999886             


Q ss_pred             ccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc
Q 038858          477 GSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI  556 (740)
Q Consensus       477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  556 (740)
                       .+ ..+..+++|+.|++++|.+++..+  +..+++|++|++++|++.+..+  +..        ++.++.++++.|.+.
T Consensus       233 -~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~--------~~~l~~l~~~~n~l~  298 (384)
T d2omza2         233 -DI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG--------LTALTNLELNENQLE  298 (384)
T ss_dssp             -CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT--------CTTCSEEECCSSCCS
T ss_pred             -Cc-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--ccc--------ccccccccccccccc
Confidence             33 357788999999999999986543  7788999999999999875432  322        578999999999988


Q ss_pred             ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCc
Q 038858          557 GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT  636 (740)
Q Consensus       557 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  636 (740)
                      +.  ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..|  +.
T Consensus       299 ~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~  370 (384)
T d2omza2         299 DI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LA  370 (384)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GT
T ss_pred             cc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hc
Confidence            53  45788899999999999999753  48899999999999999984 44 58999999999999999998765  57


Q ss_pred             cccCCCccccCCC
Q 038858          637 QFATFNESNYKGN  649 (740)
Q Consensus       637 ~~~~l~~~~~~~N  649 (740)
                      .+++|+.+++++|
T Consensus       371 ~l~~L~~L~L~~N  383 (384)
T d2omza2         371 NLTRITQLGLNDQ  383 (384)
T ss_dssp             TCTTCSEEECCCE
T ss_pred             cCCCCCEeeCCCC
Confidence            8899999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=8e-27  Score=237.36  Aligned_cols=235  Identities=31%  Similarity=0.464  Sum_probs=160.2

Q ss_pred             cCCCCCCCCCeEEccC-CcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCC
Q 038858          372 SKNFNLTKLSWLLLED-NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLD  450 (740)
Q Consensus       372 ~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  450 (740)
                      ..++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..+..+..|+.+++++|.+.+..|..+..++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            4444555555555554 455555555666666666666666666655555555666666666666666666666666666


Q ss_pred             CccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccC-cEEEcccccccccccccccCCCcccEEeCCCccccCCCCC
Q 038858          451 SLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL-SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPP  529 (740)
Q Consensus       451 ~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  529 (740)
                      .++.+++++|.+.+             .+|..+..+..+ +.+++++|++++..+..+..+.. ..++++++...+.+|.
T Consensus       150 ~L~~l~l~~n~l~~-------------~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~  215 (313)
T d1ogqa_         150 NLVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASV  215 (313)
T ss_dssp             TCCEEECCSSCCEE-------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGG
T ss_pred             ccceeecccccccc-------------cccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            66666666665543             344445555444 66677777776666666665543 3577777777666666


Q ss_pred             cccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCch
Q 038858          530 CFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPC  609 (740)
Q Consensus       530 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  609 (740)
                      .+..        ++.++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..|.++++|++|+|++|+++|.+|+
T Consensus       216 ~~~~--------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         216 LFGS--------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GCCT--------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccc--------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            5554        4577777777777775544 577788899999999999988899999999999999999999988884


Q ss_pred             hhhcCCCCCEEEccCCc-cccc
Q 038858          610 QLVELNALVVFSVAYNN-LSGK  630 (740)
Q Consensus       610 ~~~~l~~L~~L~l~~N~-l~~~  630 (740)
                       +..+++|+.+++++|+ +.|.
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEEST
T ss_pred             -cccCCCCCHHHhCCCccccCC
Confidence             5778889999999997 4443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=224.82  Aligned_cols=210  Identities=23%  Similarity=0.290  Sum_probs=144.5

Q ss_pred             CcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcc-cccccccccc
Q 038858          427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA-HNNLEGEVPV  505 (740)
Q Consensus       427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~  505 (740)
                      .+++|++++|++++..+.+|.++++|++|++++|++.+             ..+..+..++.++.+... .+.+....+.
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------------IDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-------------ECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccc-------------cccccccccccccccccccccccccccch
Confidence            45555555555554444555555555555555555542             222333444555555443 3445545566


Q ss_pred             cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccch
Q 038858          506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS  585 (740)
Q Consensus       506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  585 (740)
                      .++++++|++|++++|.+....+..+..        ..+|+.+++++|.++++.+..|..+++|+.|++++|++++..+.
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRG--------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             hhcccccCCEEecCCcccccccccccch--------hcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            6677777777777777766555544444        45677777777777766666777778888888888888877777


Q ss_pred             hccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          586 TFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       586 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      +|.++++|+.+++++|++++..|..|..+++|++|++++|++.+..|..+..+.+|+.+++++|||.|+|+.
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            888888888888888888877788888888888888888888887777777788888888888888888874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.3e-24  Score=217.07  Aligned_cols=268  Identities=24%  Similarity=0.324  Sum_probs=137.0

Q ss_pred             cEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccC
Q 038858          332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN  411 (740)
Q Consensus       332 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  411 (740)
                      +.++-++.+++ .+|..+.   +++++|++++|+++......|.++++|++|++++|++....+..|..++.|++|++++
T Consensus        13 ~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            44444444554 4554432   3455666666655555545555566666666666666655555566666666666666


Q ss_pred             CcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcE
Q 038858          412 NNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSH  491 (740)
Q Consensus       412 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~  491 (740)
                      |+++. +|..+  .+.++.|.+.+|.+.+..+..+.....+..++...|....           ....+..+..+++|+.
T Consensus        89 n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-----------~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          89 NQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKLSY  154 (305)
T ss_dssp             SCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTCCE
T ss_pred             CccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc-----------cCCCccccccccccCc
Confidence            66652 33222  2355566666666655544455555555555555554321           1122333444455555


Q ss_pred             EEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcE
Q 038858          492 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQT  571 (740)
Q Consensus       492 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  571 (740)
                      +++++|.+.. .+..  .++                                +|+.|++++|......+..|..++.++.
T Consensus       155 l~l~~n~l~~-l~~~--~~~--------------------------------~L~~L~l~~n~~~~~~~~~~~~~~~l~~  199 (305)
T d1xkua_         155 IRIADTNITT-IPQG--LPP--------------------------------SLTELHLDGNKITKVDAASLKGLNNLAK  199 (305)
T ss_dssp             EECCSSCCCS-CCSS--CCT--------------------------------TCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             cccccCCccc-cCcc--cCC--------------------------------ccCEEECCCCcCCCCChhHhhccccccc
Confidence            5555554442 1111  123                                4444555555444444445555555555


Q ss_pred             EeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCC------ccccCCCccc
Q 038858          572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMT------TQFATFNESN  645 (740)
Q Consensus       572 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------~~~~~l~~~~  645 (740)
                      |++++|.+++..+..|.++++|++|+|++|+++ .+|..+..+++|++|++++|+|+......|      ....+++.++
T Consensus       200 L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             cccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEE
Confidence            555555555555555555555555555555555 334455555555555555555554332222      2234555566


Q ss_pred             cCCCCCCC
Q 038858          646 YKGNPFLC  653 (740)
Q Consensus       646 ~~~Np~~C  653 (740)
                      ++||||.+
T Consensus       279 L~~N~~~~  286 (305)
T d1xkua_         279 LFSNPVQY  286 (305)
T ss_dssp             CCSSSSCG
T ss_pred             CCCCcCcc
Confidence            66666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=212.87  Aligned_cols=269  Identities=25%  Similarity=0.321  Sum_probs=166.6

Q ss_pred             CcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEE
Q 038858          281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV  360 (740)
Q Consensus       281 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  360 (740)
                      ..+.++-++..++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4567788887777 777754   357888888888888655567888888888888888887 55555555777788888


Q ss_pred             cCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC
Q 038858          361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG  440 (740)
Q Consensus       361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  440 (740)
                      +++|+++.....   ....++.|.+.+|.+....+..+.....+..++...+....                      ..
T Consensus        86 l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~  140 (305)
T d1xkua_          86 LSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SG  140 (305)
T ss_dssp             CCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GG
T ss_pred             ccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cC
Confidence            888777654432   23456667777776665555555555555566555553221                      11


Q ss_pred             CCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCC
Q 038858          441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD  520 (740)
Q Consensus       441 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  520 (740)
                      ..+..+..+++|+.+++++|.+.              .+|..  .+++|+.|++++|......+..+..++.++.|++++
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~--------------~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNIT--------------TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  204 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCC--------------SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             CCccccccccccCccccccCCcc--------------ccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccc
Confidence            22233444555566666665554              22221  135677777777777666666777777777777777


Q ss_pred             ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhc------cCcCCCc
Q 038858          521 NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF------TNLRHIE  594 (740)
Q Consensus       521 n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~  594 (740)
                      |.+.+..+..+..        +++|++|+|++|+++ .+|..|..+++|++|+|++|+|+......|      ..+++|+
T Consensus       205 n~l~~~~~~~~~~--------l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~  275 (305)
T d1xkua_         205 NSISAVDNGSLAN--------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS  275 (305)
T ss_dssp             SCCCEECTTTGGG--------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred             ccccccccccccc--------cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCC
Confidence            7776655555544        446666666666665 345566666666666666666665433333      2345555


Q ss_pred             EEECCCCcCC
Q 038858          595 SLDLYHNKLN  604 (740)
Q Consensus       595 ~L~Ls~N~l~  604 (740)
                      .|+|++|++.
T Consensus       276 ~L~L~~N~~~  285 (305)
T d1xkua_         276 GVSLFSNPVQ  285 (305)
T ss_dssp             EEECCSSSSC
T ss_pred             EEECCCCcCc
Confidence            5555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-23  Score=207.69  Aligned_cols=205  Identities=24%  Similarity=0.241  Sum_probs=132.7

Q ss_pred             CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858          401 CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP  480 (740)
Q Consensus       401 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  480 (740)
                      ...+.+.+.+++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|+++                 
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-----------------   68 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----------------   68 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------------
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-----------------
Confidence            334445555555555 3343332  34555555555555444444555555555555555443                 


Q ss_pred             hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858          481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP  560 (740)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  560 (740)
                                          .. + .++.+++|++|++++|++.+. +..+..        +++|+.|++++|.+.+..+
T Consensus        69 --------------------~l-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~--------l~~L~~L~l~~~~~~~~~~  117 (266)
T d1p9ag_          69 --------------------KL-Q-VDGTLPVLGTLDLSHNQLQSL-PLLGQT--------LPALTVLDVSFNRLTSLPL  117 (266)
T ss_dssp             --------------------EE-E-CCSCCTTCCEEECCSSCCSSC-CCCTTT--------CTTCCEEECCSSCCCCCCS
T ss_pred             --------------------cc-c-ccccccccccccccccccccc-cccccc--------ccccccccccccccceeec
Confidence                                21 1 123455555555555555432 222322        4566666666666665666


Q ss_pred             cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccC
Q 038858          561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT  640 (740)
Q Consensus       561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  640 (740)
                      ..+..+.++++|++++|.++...+..+..+++|+.+++++|++++..+..|..+++|++|++++|+|+ .+|+.+..+.+
T Consensus       118 ~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~  196 (266)
T d1p9ag_         118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (266)
T ss_dssp             STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             cccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCC
Confidence            66777778888888888888777777788888888888888888777777888888888888888888 55655667888


Q ss_pred             CCccccCCCCCCCCCCC
Q 038858          641 FNESNYKGNPFLCGLPL  657 (740)
Q Consensus       641 l~~~~~~~Np~~C~~~~  657 (740)
                      |+.++++||||.|+|..
T Consensus       197 L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         197 LPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CSEEECCSCCBCCSGGG
T ss_pred             CCEEEecCCCCCCCcch
Confidence            88999999999999964

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-23  Score=207.03  Aligned_cols=139  Identities=27%  Similarity=0.301  Sum_probs=71.5

Q ss_pred             hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858          483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ  562 (740)
Q Consensus       483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  562 (740)
                      |.++++|++|++++|.+....+..+...++|+.+++++|.++++.+..|..        .++|+.|++++|++.+..+.+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~--------~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------LGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCEECTTT
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc--------ccchhhcccccCcccccchhh
Confidence            344444444444444444333344444444555555555544444444433        234555555555555444555


Q ss_pred             ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858          563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  629 (740)
                      |.++++|+.+++++|++++..|..|..+++|++||+++|++.+..+..|..+++|++|++++|++.+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            5555555555555555555555555555555555555555555555555555555555555555553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.4e-21  Score=186.67  Aligned_cols=198  Identities=25%  Similarity=0.216  Sum_probs=107.2

Q ss_pred             CCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEecc
Q 038858          379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGIS  458 (740)
Q Consensus       379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  458 (740)
                      .+.+++.+++.++. +|..+.  +++++|++++|.+++..+..|.++++|++|++++|+++..  ..+..+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--ccccccccccccccc
Confidence            34444555555543 233232  3566666666666544445566666666666666666532  124456667777777


Q ss_pred             CCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccch
Q 038858          459 DNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHE  538 (740)
Q Consensus       459 ~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  538 (740)
                      +|++.              ..+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.+....+          
T Consensus        86 ~N~l~--------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~----------  141 (266)
T d1p9ag_          86 HNQLQ--------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------  141 (266)
T ss_dssp             SSCCS--------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----------
T ss_pred             ccccc--------------ccccccccccccccccccccccceeeccccccccccccccccccccceecc----------
Confidence            77665              233344555566666666665555555555555555666665555554333          


Q ss_pred             hhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCC
Q 038858          539 RRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALV  618 (740)
Q Consensus       539 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  618 (740)
                                            ..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+
T Consensus       142 ----------------------~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         142 ----------------------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             ----------------------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             ----------------------ccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC
Confidence                                  34444455555555555555544455555555555555555555 4444444555555


Q ss_pred             EEEccCCccc
Q 038858          619 VFSVAYNNLS  628 (740)
Q Consensus       619 ~L~l~~N~l~  628 (740)
                      .|++++|++.
T Consensus       199 ~L~L~~Np~~  208 (266)
T d1p9ag_         199 FAFLHGNPWL  208 (266)
T ss_dssp             EEECCSCCBC
T ss_pred             EEEecCCCCC
Confidence            5555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=2.9e-17  Score=169.28  Aligned_cols=304  Identities=27%  Similarity=0.383  Sum_probs=139.9

Q ss_pred             CCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEE
Q 038858          232 KLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFN  311 (740)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  311 (740)
                      +++.|+++++.++ .+|+    ..++|++|++++|+++.. +..   ..+|++|++++|.++ .++.    ..+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            5666666666665 4553    235566666666665533 211   345666666666554 3332    123455666


Q ss_pred             ccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccc
Q 038858          312 ISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV  391 (740)
Q Consensus       312 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  391 (740)
                      +++|.+. .+|. ++.+++|+.|+++++.+. ..+..    ...+..+.+..+....  ...                  
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~~----~~~l~~l~~~~~~~~~--~~~------------------  157 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE--LPE------------------  157 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS--CCC------------------
T ss_pred             ccccccc-cccc-hhhhccceeecccccccc-ccccc----cccccchhhccccccc--ccc------------------
Confidence            6655555 2332 345555555555555554 22221    2334444444333221  122                  


Q ss_pred             ccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCC
Q 038858          392 EEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLS  471 (740)
Q Consensus       392 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  471 (740)
                            +..++.++.+++++|.... .+..   ....+.+...++.+. .. ..+..++.|+.+++++|...        
T Consensus       158 ------l~~l~~l~~L~l~~n~~~~-~~~~---~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~--------  217 (353)
T d1jl5a_         158 ------LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLK--------  217 (353)
T ss_dssp             ------CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCS--------
T ss_pred             ------ccccccceecccccccccc-cccc---ccccccccccccccc-cc-cccccccccccccccccccc--------
Confidence                  3334444444444444331 1111   111223333333222 11 12334455555555555433        


Q ss_pred             CCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEcc
Q 038858          472 YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS  551 (740)
Q Consensus       472 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  551 (740)
                            ..+.   ...++..+.+..+.+... +   ...+.+...++..+.+.+...  +          .......++.
T Consensus       218 ------~~~~---~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l~~--l----------~~~~~~~~~~  272 (353)
T d1jl5a_         218 ------TLPD---LPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGLSE--L----------PPNLYYLNAS  272 (353)
T ss_dssp             ------SCCS---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEESC--C----------CTTCCEEECC
T ss_pred             ------cccc---cccccccccccccccccc-c---ccccccccccccccccccccc--c----------cchhcccccc
Confidence                  1111   123344455555444321 1   112344444444444332110  0          0133445555


Q ss_pred             CccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccC
Q 038858          552 CNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKI  631 (740)
Q Consensus       552 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  631 (740)
                      .+.+.+.    ...+++|++|+|++|+++. +|.   .+++|+.|++++|+|+ .+|..   +++|++|++++|+++ .+
T Consensus       273 ~~~~~~~----~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~l  339 (353)
T d1jl5a_         273 SNEIRSL----CDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EF  339 (353)
T ss_dssp             SSCCSEE----CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SC
T ss_pred             cCccccc----cccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CC
Confidence            5554422    2234567777777777763 332   2466777777777776 44532   356777777777776 34


Q ss_pred             CCC
Q 038858          632 PEM  634 (740)
Q Consensus       632 ~~~  634 (740)
                      |+.
T Consensus       340 p~~  342 (353)
T d1jl5a_         340 PDI  342 (353)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=1.1e-16  Score=164.83  Aligned_cols=199  Identities=24%  Similarity=0.286  Sum_probs=129.1

Q ss_pred             cccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEe
Q 038858          207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD  286 (740)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  286 (740)
                      ++++|++ +++..+ .+|+.   .++|++|++++|.++ .+|..    ..+|++|++++|.++....  +  .+.|++|+
T Consensus        39 ~l~~LdL-s~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELEL-NNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSD--L--PPLLEYLG  104 (353)
T ss_dssp             TCSEEEC-TTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCS--C--CTTCCEEE
T ss_pred             CCCEEEe-CCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhhh--h--cccccccc
Confidence            6899999 455554 46643   468999999999998 66753    5789999999998875432  1  25799999


Q ss_pred             ccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccc
Q 038858          287 VSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL  366 (740)
Q Consensus       287 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  366 (740)
                      +++|.+. .+|.. . .+++|++|+++++.+... +.   ....+..+.+..+... ... . ...++.++.+++.+|..
T Consensus       105 L~~n~l~-~lp~~-~-~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~-~~~-~-l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         105 VSNNQLE-KLPEL-Q-NSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE-ELP-E-LQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             CCSSCCS-SCCCC-T-TCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCC
T ss_pred             ccccccc-cccch-h-hhccceeecccccccccc-cc---ccccccchhhcccccc-ccc-c-ccccccceecccccccc
Confidence            9999998 67753 3 488999999999988743 32   2456777888776654 221 1 22577888999988876


Q ss_pred             cccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCccc
Q 038858          367 EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE  439 (740)
Q Consensus       367 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  439 (740)
                      .....    .....+.+...++.+... + .+..++.|+.+++++|... ..+.   ...++..+.+.++.+.
T Consensus       175 ~~~~~----~~~~~~~l~~~~~~~~~~-~-~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         175 KKLPD----LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT  237 (353)
T ss_dssp             SSCCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCS
T ss_pred             ccccc----cccccccccccccccccc-c-ccccccccccccccccccc-cccc---cccccccccccccccc
Confidence            54321    122334555554443322 2 2455666777777766554 2222   2334555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.8e-21  Score=203.36  Aligned_cols=386  Identities=19%  Similarity=0.128  Sum_probs=209.2

Q ss_pred             CCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCC----CCCCCCCCCcCEEeccCCcCcccCChhHhhc----
Q 038858          232 KLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPF----RLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI----  303 (740)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----  303 (740)
                      +|+.||++++++++..-..++..++++++|+|++|.++...    ...+..+++|++|++++|.+++.....+...    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            45566666666655443444455666666666666554211    1223456677777777776653222222221    


Q ss_pred             CCCCcEEEccCCcCccc----CCccccCCCCCcEEEeecccCCCccChhhhh----cCccCcEEEcCCccccccC----C
Q 038858          304 LPSLSSFNISMNALDGS----IPSSFGNMNFLQILDLSNNHLTGEIPEHLAI----GCVNLEILVLSNNNLEGHM----F  371 (740)
Q Consensus       304 ~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~----~  371 (740)
                      .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.....+..    ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            23677777777776643    2345666777777777777765322211111    1112233333332222111    0


Q ss_pred             cCCCCCCCCCeEEccCCcccccCc----ccc-ccCCCCCeEEccCCcCccc----CCCCCCCccCcceeeccCCcccCC-
Q 038858          372 SKNFNLTKLSWLLLEDNHFVEEIP----QSL-SKCLSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHLEGP-  441 (740)
Q Consensus       372 ~~~~~l~~L~~L~l~~n~~~~~~~----~~~-~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~-  441 (740)
                      ..+.....++.++++++.......    ..+ ........+++..+.+...    ....+...+.++.+++.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            112234566777777665532210    111 1223455677766655321    111223456677777777765321 


Q ss_pred             ----CCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccc-----cCCCc
Q 038858          442 ----IPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQL-----CGLNQ  512 (740)
Q Consensus       442 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~  512 (740)
                          ..........++.+++++|.+....         .+.....+...+.++.+++++|.++......+     .....
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~---------~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~  313 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKG---------CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ  313 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHH---------HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred             cchhhcccccccccccccccccccccccc---------cccccccccccccccccccccccccccccchhhccccccccc
Confidence                1223344667888888888765210         01223345567788888888887764322221     23457


Q ss_pred             ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc----CCcCc-cCCCcCcEEeCcCCcCCCc----c
Q 038858          513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD----IPPQI-GNLTRIQTLNLSHNNLTGT----I  583 (740)
Q Consensus       513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~-~~l~~L~~L~L~~n~l~~~----~  583 (740)
                      |+.+++++|.++......+..    .....++|++|+|++|.+.+.    ++..+ ...+.|++|+|++|.++..    +
T Consensus       314 L~~l~l~~~~l~~~~~~~l~~----~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  389 (460)
T d1z7xw1         314 LESLWVKSCSFTAACCSHFSS----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  389 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHH----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             cccccccccchhhhhhhhccc----ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHH
Confidence            888888888776432222211    123345788888888887542    22222 2456688888888888743    3


Q ss_pred             chhccCcCCCcEEECCCCcCCccCchhhh-----cCCCCCEEEccCCccccc
Q 038858          584 LSTFTNLRHIESLDLYHNKLNGKIPCQLV-----ELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       584 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~  630 (740)
                      .+.+..+++|++|+|++|+++......+.     ....|+.|++++|.+...
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            34566678888888888888754333332     233688888888877643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8e-21  Score=204.08  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=18.5

Q ss_pred             cCcceeeccCCcccCC----CCccccCCCCccEEeccCCcCC
Q 038858          426 TGLQYIIIPENHLEGP----IPVAFCQLDSLQILGISDNNIS  463 (740)
Q Consensus       426 ~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~  463 (740)
                      +.|++|++++|.+++.    ++..+..+++|++|++++|+++
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            4455555555555422    1222334455555665555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=7.7e-18  Score=156.39  Aligned_cols=133  Identities=25%  Similarity=0.329  Sum_probs=103.1

Q ss_pred             cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc-cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858          514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG-DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH  592 (740)
Q Consensus       514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  592 (740)
                      ++++.+++.++. +|..++          +.+++|+|++|+|++ ..+..|..+++|+.|+|++|.++...+..|..+++
T Consensus        11 ~~v~Cs~~~L~~-iP~~lp----------~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~   79 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDIP----------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC----------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEEeCCCcCc-cCCCCC----------CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc
Confidence            456677776663 333332          367777788887765 33556788888888888888888888888888888


Q ss_pred             CcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          593 IESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       593 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      |++|+|++|++++..|..|.++++|++|+|++|+|++..|+.|..+++++++++++|||.|+|+.
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            88888888888877777788888888888888888888888888888888888888888888863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4.4e-18  Score=158.05  Aligned_cols=177  Identities=22%  Similarity=0.274  Sum_probs=133.8

Q ss_pred             cEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccc-cccccccCCCcccEEeCCCccccCCCCCcc
Q 038858          453 QILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG-EVPVQLCGLNQLQLLDLSDNKLHGLIPPCF  531 (740)
Q Consensus       453 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  531 (740)
                      ++++.++++++              .+|..+.  +++++|+|++|.+++ ..+..|.++++|++|++++|.+....+..|
T Consensus        11 ~~v~Cs~~~L~--------------~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_          11 TTVDCTGRGLK--------------EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             TEEECTTSCCS--------------SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CEEEEeCCCcC--------------ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc
Confidence            45666666665              3333322  567888888888865 445667888888888888888888877777


Q ss_pred             cccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhh
Q 038858          532 DNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL  611 (740)
Q Consensus       532 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  611 (740)
                      ..        +++|++|++++|++....+.+|.++++|++|+|++|+|++..+++|..+++|++|+|++|++....+..+
T Consensus        75 ~~--------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          75 EG--------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             TT--------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             cc--------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH
Confidence            66        5688889999999888888889999999999999999998888999999999999999999975433221


Q ss_pred             hcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          612 VELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       612 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                       -...++.+.+..|.++...|..   +..++..++..|.+.|.++-
T Consensus       147 -~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         147 -FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             -HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC-
T ss_pred             -HhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCCC
Confidence             1223566677888888776654   44556678899999997653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.4e-17  Score=157.83  Aligned_cols=189  Identities=19%  Similarity=0.319  Sum_probs=112.0

Q ss_pred             ccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCcc
Q 038858          399 SKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGS  478 (740)
Q Consensus       399 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~  478 (740)
                      ..+.+|++|++.+|.++. + ..+..+++|++|++++|.+++..  .+..+++++.+++++|.++              .
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~--------------~   99 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK--------------N   99 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS--------------C
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc--------------c
Confidence            344555555555555542 2 23555556666666665555332  2555566666666665554              1


Q ss_pred             CchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc
Q 038858          479 IPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD  558 (740)
Q Consensus       479 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  558 (740)
                      + ..+..+++|+.+.++++...+.  ..+...+.++.+.++++.+....+  +..        .++|+.|++++|.+.+.
T Consensus       100 i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~--------~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2         100 V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAG--------LTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGG--------CTTCCEEECCSSCCCCC
T ss_pred             c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hcc--------ccccccccccccccccc
Confidence            1 1244556666666666655432  224455666666666666543221  111        35677777777766533


Q ss_pred             CCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858          559 IPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY  624 (740)
Q Consensus       559 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  624 (740)
                        ..++++++|++|+|++|++++.  ..++++++|++|++++|++++. + .+..+++|++|++++
T Consensus       167 --~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 --TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             --hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence              2367778888888888887753  3477788888888888888744 3 267788888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.6e-17  Score=157.79  Aligned_cols=200  Identities=15%  Similarity=0.067  Sum_probs=91.1

Q ss_pred             CcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccc-ccccccccc
Q 038858          427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAH-NNLEGEVPV  505 (740)
Q Consensus       427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~  505 (740)
                      ++++|++++|.++...+..|.++++|++|++++|.+.+.+            .+.+|.+++.++++.+.. |.+....+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i------------~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI------------EADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEE------------CSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhcccccccee------------eccccccccccccccccccccccccccc
Confidence            4444555555444333334444555555555544443111            122334444455544432 344444444


Q ss_pred             cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC-cCcEEeCcCCcCCCccc
Q 038858          506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT-RIQTLNLSHNNLTGTIL  584 (740)
Q Consensus       506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~  584 (740)
                      .+.++++|+++++++|.+....+..+..       .+..+..+..+++.+....+..|..++ .++.|++++|+++...+
T Consensus        98 ~~~~l~~L~~l~l~~~~l~~~~~~~~~~-------~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTGIKHLPDVHKIH-------SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             SEECCTTCCEEEEESCCCCSCCCCTTTC-------BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             cccccccccccccchhhhcccccccccc-------cccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            4555555555555555544322211111       123344444444455444444444443 45555666555554333


Q ss_pred             hhccCcCCCcEE-ECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcccc
Q 038858          585 STFTNLRHIESL-DLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNY  646 (740)
Q Consensus       585 ~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~  646 (740)
                      ..|. .++++++ ++++|+++...+..|..+++|++|++++|+++...+..+..+..|+.+++
T Consensus       171 ~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         171 CAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            3333 2333333 34555555333344555566666666666665544444455555544443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.9e-17  Score=156.35  Aligned_cols=186  Identities=23%  Similarity=0.326  Sum_probs=94.1

Q ss_pred             CccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceee
Q 038858          353 CVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYII  432 (740)
Q Consensus       353 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  432 (740)
                      +.+|+.|++.+|.++..  ..+..+++|++|++++|++.+..+  +..+++++++++++|.++                 
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-----------------   98 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-----------------   98 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-----------------
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-----------------
Confidence            44555555555555432  234445555555555555443322  444455555555554443                 


Q ss_pred             ccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCc
Q 038858          433 IPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQ  512 (740)
Q Consensus       433 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  512 (740)
                             ..  ..+..+++|+.++++++...+               ...+...+.++.+.++++.+....  .+...++
T Consensus        99 -------~i--~~l~~l~~L~~l~l~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~  152 (227)
T d1h6ua2          99 -------NV--SAIAGLQSIKTLDLTSTQITD---------------VTPLAGLSNLQVLYLDLNQITNIS--PLAGLTN  152 (227)
T ss_dssp             -------CC--GGGTTCTTCCEEECTTSCCCC---------------CGGGTTCTTCCEEECCSSCCCCCG--GGGGCTT
T ss_pred             -------cc--ccccccccccccccccccccc---------------cchhccccchhhhhchhhhhchhh--hhccccc
Confidence                   21  224444455555554444321               111233344555555555443221  2344455


Q ss_pred             ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858          513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH  592 (740)
Q Consensus       513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  592 (740)
                      |+.|++++|.+.+..+  +..        +++|+.|++++|++++. + .++.+++|++|+|++|++++..  .++++++
T Consensus       153 L~~L~l~~n~~~~~~~--l~~--------l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~  218 (227)
T d1h6ua2         153 LQYLSIGNAQVSDLTP--LAN--------LSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSN  218 (227)
T ss_dssp             CCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTT
T ss_pred             cccccccccccccchh--hcc--------cccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCC
Confidence            5555555555542211  222        45666666666666532 2 3667777777777777777543  3677777


Q ss_pred             CcEEECC
Q 038858          593 IESLDLY  599 (740)
Q Consensus       593 L~~L~Ls  599 (740)
                      |+.|+++
T Consensus       219 L~~L~ls  225 (227)
T d1h6ua2         219 LFIVTLT  225 (227)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEee
Confidence            7777775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.5e-17  Score=157.88  Aligned_cols=221  Identities=20%  Similarity=0.151  Sum_probs=153.3

Q ss_pred             CEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEcc
Q 038858          234 EDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNIS  313 (740)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  313 (740)
                      +.++.++..++ .+|+.+   .+++++|++++|.++......|.++++|++|++++|.+.+.++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777666 666543   25788888888888877677788888899999988887766666666668888888876


Q ss_pred             C-CcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCC-CCCeEEccCCccc
Q 038858          314 M-NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLT-KLSWLLLEDNHFV  391 (740)
Q Consensus       314 ~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~  391 (740)
                      . |.+....+..|.++++|+++++++|.+....+......+..+..+...++.+.......+..++ .++.|++++|++.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 5677777788888899999999988887332323333455566666677777766666665543 6777888888777


Q ss_pred             ccCccccccCCCCCeE-EccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccC
Q 038858          392 EEIPQSLSKCLSLEGL-HLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD  459 (740)
Q Consensus       392 ~~~~~~~~~l~~L~~L-~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  459 (740)
                      ...+..+. .++++++ ++++|.++...+..|.++++|+.|++++|+++...+..|.+++.|+.+++.+
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            65554443 3444444 4566677654455677778888888888887766666677777776666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.4e-15  Score=143.10  Aligned_cols=122  Identities=25%  Similarity=0.389  Sum_probs=66.1

Q ss_pred             ccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCcc
Q 038858          485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG  564 (740)
Q Consensus       485 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  564 (740)
                      .+++|+.|++++|++++ ++ .+..+++|+.|++++|.+...  ..+.        .++.++.+++++|.+++  +..+.
T Consensus        88 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l~--------~l~~l~~l~~~~n~l~~--~~~~~  153 (210)
T d1h6ta2          88 NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLV--------HLPQLESLYLGNNKITD--ITVLS  153 (210)
T ss_dssp             TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGG--------GCTTCCEEECCSSCCCC--CGGGG
T ss_pred             cCccccccccccccccc-cc-ccccccccccccccccccccc--cccc--------ccccccccccccccccc--ccccc
Confidence            33444444444444432 11 244445555555555544321  1111        13455555555555542  23455


Q ss_pred             CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858          565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY  624 (740)
Q Consensus       565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  624 (740)
                      .+++|+++++++|++++..  .+.++++|++|++++|++++ +| .+..+++|++|++++
T Consensus       154 ~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            6667777777777776532  36677777777777777763 34 467777777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4.9e-16  Score=146.19  Aligned_cols=165  Identities=23%  Similarity=0.378  Sum_probs=103.4

Q ss_pred             CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858          401 CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP  480 (740)
Q Consensus       401 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  480 (740)
                      +.+|++|++++|.+++. + .+..+++|++|++++|++++..  .+..+++|+.|++++|+++              .++
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~--------------~l~  106 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK--------------DLS  106 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC--------------CGG
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc--------------ccc
Confidence            34556666666665532 1 3455666666666666665432  2455666666666666654              222


Q ss_pred             hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858          481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP  560 (740)
Q Consensus       481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  560 (740)
                       .+..+++|+.|++++|.+..  ...+..++.++.+++++|.+++..  .+.        .+++|+.+++++|++++. +
T Consensus       107 -~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~--~~~--------~l~~L~~l~l~~n~l~~i-~  172 (210)
T d1h6ta2         107 -SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT--VLS--------RLTKLDTLSLEDNQISDI-V  172 (210)
T ss_dssp             -GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--GGG--------GCTTCSEEECCSSCCCCC-G
T ss_pred             -cccccccccccccccccccc--cccccccccccccccccccccccc--ccc--------cccccccccccccccccc-c
Confidence             35556667777777666542  224566677777777777665321  122        256777777877777643 2


Q ss_pred             cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCC
Q 038858          561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH  600 (740)
Q Consensus       561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  600 (740)
                       .+.++++|++|+|++|+++..  ..|.++++|++|+|++
T Consensus       173 -~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 -PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred             -cccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence             377888888888888888753  3688888888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.5e-15  Score=141.60  Aligned_cols=72  Identities=33%  Similarity=0.506  Sum_probs=42.5

Q ss_pred             cccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEE
Q 038858          543 SLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVF  620 (740)
Q Consensus       543 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  620 (740)
                      ++|+.|++++|++.. + +.+..+++|+.|++++|++++.  ..++++++|++|++++|++++ ++ .+..+++|+.|
T Consensus       128 ~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            445555555555442 2 2455666677777777766653  246667777777777777663 33 35666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.4e-15  Score=140.10  Aligned_cols=81  Identities=25%  Similarity=0.426  Sum_probs=40.6

Q ss_pred             cccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEc
Q 038858          543 SLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV  622 (740)
Q Consensus       543 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  622 (740)
                      +.|+.|++++|.+...  ..+..+++|+.|++++|++..  .+.+..+++|++|++++|++++. + .+..+++|++|++
T Consensus       106 ~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~l  179 (199)
T d2omxa2         106 TNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDI  179 (199)
T ss_dssp             TTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred             cccccccccccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC-c-cccCCCCCCEEEC
Confidence            3444444444444321  234455555555555555543  23455555555555555555532 2 2455555555555


Q ss_pred             cCCcccc
Q 038858          623 AYNNLSG  629 (740)
Q Consensus       623 ~~N~l~~  629 (740)
                      ++|+++.
T Consensus       180 s~N~i~~  186 (199)
T d2omxa2         180 SSNKVSD  186 (199)
T ss_dssp             CSSCCCC
T ss_pred             CCCCCCC
Confidence            5555553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.5e-16  Score=152.73  Aligned_cols=224  Identities=16%  Similarity=0.159  Sum_probs=145.8

Q ss_pred             CEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEcc
Q 038858          234 EDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNIS  313 (740)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  313 (740)
                      +.+|++++.+.......+..  .....+.+.......... ......+|++||++++.+.+.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788877765444333322  245566666555443222 233456899999999988765556667778999999999


Q ss_pred             CCcCcccCCccccCCCCCcEEEeecc-cCCCccChhhhhcCccCcEEEcCCcc-ccccCC-cCC-CCCCCCCeEEccCCc
Q 038858          314 MNALDGSIPSSFGNMNFLQILDLSNN-HLTGEIPEHLAIGCVNLEILVLSNNN-LEGHMF-SKN-FNLTKLSWLLLEDNH  389 (740)
Q Consensus       314 ~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~-~~l~~L~~L~l~~n~  389 (740)
                      +|.+++..+..+..+++|++|++++| .+++..-..+..++++|++|++++|. +++... ..+ ...++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99988777788889999999999986 45533223445578899999998864 432211 112 234678888888753


Q ss_pred             --cccc-CccccccCCCCCeEEccCCc-CcccCCCCCCCccCcceeeccCC-cccCCCCccccCCCCccEEeccCC
Q 038858          390 --FVEE-IPQSLSKCLSLEGLHLNNNN-LSGKIPQWLGNLTGLQYIIIPEN-HLEGPIPVAFCQLDSLQILGISDN  460 (740)
Q Consensus       390 --~~~~-~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n  460 (740)
                        +... +...+..+++|++|++++|. +++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              2221 22233567788888887763 55555556666777777777775 454444445566677777777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=148.19  Aligned_cols=186  Identities=20%  Similarity=0.179  Sum_probs=103.9

Q ss_pred             CCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCC
Q 038858           30 NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMP  109 (740)
Q Consensus        30 ~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~  109 (740)
                      ...+|++|++++|.+.+.....+...+++|++|++.+|.+++..+. .++.+++|++|++++|. .+++.....+...++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~-~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCB-SCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCcCccccccc-cccccccchhhHHHH
Confidence            4457788888887776655555554477888888888876643332 36677788888888763 344444445555578


Q ss_pred             CCcEEEccCcc-cccCCCCCCcccc-CCCCCCCEEEccCCc--cccc-cCccccCCCCCCEEEccCCc-CccccCCCchh
Q 038858          110 FLKYLSLSYFT-FGTNSSRILDQGL-CPLVHLQELHMANND--LRGS-LPWCLANMTSLRTLDVSSNQ-LTGSISSSPLI  183 (740)
Q Consensus       110 ~L~~L~Ls~~~-~~~~~~~~~~~~l-~~l~~L~~L~L~~n~--i~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~  183 (740)
                      +|++|++++|. +++  ..+.. .+ ...++|+.|+++++.  ++.. +.....++++|++|++++|. +++.....   
T Consensus       122 ~L~~L~ls~c~~~~~--~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~---  195 (284)
T d2astb2         122 RLDELNLSWCFDFTE--KHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---  195 (284)
T ss_dssp             TCCEEECCCCTTCCH--HHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG---
T ss_pred             hcccccccccccccc--ccchh-hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh---
Confidence            88888887763 220  00111 12 224577788877653  3321 22233456777777777753 33221111   


Q ss_pred             hcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCC
Q 038858          184 LDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHI  241 (740)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  241 (740)
                                        ...+++|++|+++++..+++.....++.+++|+.|+++++
T Consensus       196 ------------------l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 ------------------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ------------------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ------------------hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                              1223355555554434444444444555555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-14  Score=128.09  Aligned_cols=112  Identities=17%  Similarity=0.228  Sum_probs=95.6

Q ss_pred             ccceEEccCccccccCCcCccCCCcCcEEeCcCC-cCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEc
Q 038858          544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHN-NLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV  622 (740)
Q Consensus       544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  622 (740)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+|+...|..|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456777777777 45677888899999999766 588888889999999999999999999888888999999999999


Q ss_pred             cCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858          623 AYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL  657 (740)
Q Consensus       623 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  657 (740)
                      ++|+++...++.+.. ..++.+++++|||.|+|.+
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCcccCCchH
Confidence            999999777776554 4699999999999999964

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.3e-14  Score=126.65  Aligned_cols=126  Identities=20%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             ccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCcc
Q 038858          485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG  564 (740)
Q Consensus       485 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  564 (740)
                      ++.++++|+|++|+++. ++..+..+++|+.|++++|+++...  .+..        +++|+.|++++|+++...+..+.
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~--------l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLD--GFPL--------LRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEEC--CCCC--------CSSCCEEECCSSCCCEECSCHHH
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccC--Cccc--------CcchhhhhcccccccCCCccccc
Confidence            33445555555555542 2333344455555555555554321  1222        34555555555555543333444


Q ss_pred             CCCcCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCccC---chhhhcCCCCCEEE
Q 038858          565 NLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKI---PCQLVELNALVVFS  621 (740)
Q Consensus       565 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~  621 (740)
                      .+++|+.|++++|+++... ...+..+++|++|++++|+++...   +..+..+|+|++||
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5556666666666655422 134555666666666666664221   12345556666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.9e-14  Score=124.97  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=86.4

Q ss_pred             ccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccC
Q 038858          446 FCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHG  525 (740)
Q Consensus       446 ~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  525 (740)
                      +.++..+++|++++|+++              .++..+..+++|+.|++++|.++..  +.+..+++|++|++++|+++.
T Consensus        14 ~~n~~~lr~L~L~~n~I~--------------~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP--------------VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             EECTTSCEEEECTTSCCC--------------SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE
T ss_pred             ccCcCcCcEEECCCCCCC--------------ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccC
Confidence            445556677777777665              3444455666777777777777633  246677777777777777776


Q ss_pred             CCCCcccccccchhhhccccceEEccCccccccCC-cCccCCCcCcEEeCcCCcCCCcc---chhccCcCCCcEEE
Q 038858          526 LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP-PQIGNLTRIQTLNLSHNNLTGTI---LSTFTNLRHIESLD  597 (740)
Q Consensus       526 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  597 (740)
                      ..+..+..        +++|+.|++++|++..... ..+..+++|++|++++|.++...   +..+..+|+|+.||
T Consensus        78 l~~~~~~~--------l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          78 IGEGLDQA--------LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECSCHHHH--------CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             CCcccccc--------ccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55544433        5677777887777764322 35778888999999999887533   23578889999887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=8.6e-15  Score=149.56  Aligned_cols=252  Identities=13%  Similarity=0.117  Sum_probs=120.0

Q ss_pred             CCCCCCCCeEEccCCcccccC----ccccccCCCCCeEEccCCcCccc----------CCCCCCCccCcceeeccCCccc
Q 038858          374 NFNLTKLSWLLLEDNHFVEEI----PQSLSKCLSLEGLHLNNNNLSGK----------IPQWLGNLTGLQYIIIPENHLE  439 (740)
Q Consensus       374 ~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~i~~~----------~~~~l~~l~~L~~L~l~~n~~~  439 (740)
                      +....+++.|++++|.+....    ...+...++|+.++++++.....          +...+..+++|++|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            445677888888888765432    23455667788888877654311          1122344566777777777665


Q ss_pred             CCCC----ccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc----cccccCCC
Q 038858          440 GPIP----VAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV----PVQLCGLN  511 (740)
Q Consensus       440 ~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~  511 (740)
                      ....    ..+...++|++|++++|.+.......+...-............+.|+.+.+++|.+....    ...+...+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence            4322    223345666777776665531000000000000000001123455666666666554221    22234455


Q ss_pred             cccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc----CCcCccCCCcCcEEeCcCCcCCCccch--
Q 038858          512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD----IPPQIGNLTRIQTLNLSHNNLTGTILS--  585 (740)
Q Consensus       512 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~--  585 (740)
                      .|+.|++++|.+.......   .-...+...++|+.|++++|.++..    +...+..+++|++|+|++|.+++....  
T Consensus       187 ~L~~L~L~~n~i~~~g~~~---~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEH---LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHH---HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhccccccccccccccccc---chhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            6666666666554210000   0001122245566666666655421    223344555666666666666543222  


Q ss_pred             --hccC--cCCCcEEECCCCcCCcc----Cchhhh-cCCCCCEEEccCCccc
Q 038858          586 --TFTN--LRHIESLDLYHNKLNGK----IPCQLV-ELNALVVFSVAYNNLS  628 (740)
Q Consensus       586 --~~~~--l~~L~~L~Ls~N~l~~~----~~~~~~-~l~~L~~L~l~~N~l~  628 (740)
                        ++..  .+.|++|++++|+++..    +...+. ..+.|++|++++|++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence              2222  24566666666665432    122221 3455666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=1.1e-14  Score=148.68  Aligned_cols=145  Identities=17%  Similarity=0.164  Sum_probs=94.4

Q ss_pred             CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccc-----ccccccCCCcccEEeCCCcc
Q 038858          448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGE-----VPVQLCGLNQLQLLDLSDNK  522 (740)
Q Consensus       448 ~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~  522 (740)
                      ..+.|+.+++++|.+....         ...+...+..++.|++|++++|.+...     ....+..+++|+.|++++|.
T Consensus       156 ~~~~L~~l~l~~n~i~~~~---------~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGS---------MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGG---------HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             cCcccceeecccccccccc---------cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence            4567788888877764110         012334456677888888888877632     23446677888888888887


Q ss_pred             ccCCCCCcccccccchhhhccccceEEccCccccccCC----cCcc--CCCcCcEEeCcCCcCCCcc----chhcc-CcC
Q 038858          523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP----PQIG--NLTRIQTLNLSHNNLTGTI----LSTFT-NLR  591 (740)
Q Consensus       523 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~--~l~~L~~L~L~~n~l~~~~----~~~~~-~l~  591 (740)
                      ++......+.    ..+...+.|++|++++|.+.+...    ..+.  ..+.|++|++++|.++...    ...+. +.+
T Consensus       227 i~~~g~~~L~----~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~  302 (344)
T d2ca6a1         227 FTHLGSSALA----IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  302 (344)
T ss_dssp             CHHHHHHHHH----HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             cccccccccc----ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence            7532111111    123346788888998888865322    2222  2367999999999998533    23343 578


Q ss_pred             CCcEEECCCCcCCc
Q 038858          592 HIESLDLYHNKLNG  605 (740)
Q Consensus       592 ~L~~L~Ls~N~l~~  605 (740)
                      +|+.|++++|++..
T Consensus       303 ~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         303 DLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCEEECTTSBSCT
T ss_pred             CCCEEECCCCcCCC
Confidence            99999999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6.7e-13  Score=111.96  Aligned_cols=103  Identities=29%  Similarity=0.435  Sum_probs=63.9

Q ss_pred             cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCC
Q 038858          514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI  593 (740)
Q Consensus       514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  593 (740)
                      |.|++++|.++...  .+..        ++.|++|++++|+++ .+|+.+..+++|+.|++++|.+++.  +.+..+++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~--------l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQ--------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRL   67 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGG--------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSC
T ss_pred             CEEEcCCCCCCCCc--cccc--------CCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--Ccccccccc
Confidence            35666666665331  1322        456666666666666 3455566677777777777777653  346677777


Q ss_pred             cEEECCCCcCCccC-chhhhcCCCCCEEEccCCcccc
Q 038858          594 ESLDLYHNKLNGKI-PCQLVELNALVVFSVAYNNLSG  629 (740)
Q Consensus       594 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~  629 (740)
                      ++|++++|++++.. ...+..+++|+++++++|+++.
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            77777777776432 2456667777777777777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.1e-12  Score=110.57  Aligned_cols=117  Identities=28%  Similarity=0.310  Sum_probs=69.2

Q ss_pred             EEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCc
Q 038858          491 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ  570 (740)
Q Consensus       491 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  570 (740)
                      .|++++|.++.. + .+..+++|++|++++|+++. +|..+..        +++|+.|++++|.+++. | .+..+++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~--------l~~L~~L~l~~N~i~~l-~-~~~~l~~L~   68 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA-LPPALAA--------LRCLEVLQASDNALENV-D-GVANLPRLQ   68 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC-CCGGGGG--------CTTCCEEECCSSCCCCC-G-GGTTCSSCC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCc-chhhhhh--------hhccccccccccccccc-C-ccccccccC
Confidence            455555555422 2 24555555555555555543 2333333        34566666666666532 2 467778888


Q ss_pred             EEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCcc---CchhhhcCCCCCEE
Q 038858          571 TLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGK---IPCQLVELNALVVF  620 (740)
Q Consensus       571 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L  620 (740)
                      +|++++|+++... ...+..+++|+.|++++|+++..   .......+|+|+.+
T Consensus        69 ~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             eEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8888888887543 35677888888888888888632   22334456777655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=1.9e-13  Score=126.25  Aligned_cols=131  Identities=23%  Similarity=0.278  Sum_probs=84.9

Q ss_pred             cCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc
Q 038858          478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG  557 (740)
Q Consensus       478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  557 (740)
                      .++..+..+++|++|++++|.++.. + .+..+++|+.|++++|.++.. |..+..        ++.|+.|++++|.++.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~--------~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAV--------ADTLEELWISYNQIAS  107 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC-SSHHHH--------HHHCCEEECSEEECCC
T ss_pred             hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccc-cccccc--------cccccccccccccccc
Confidence            4456677777888888888877743 2 466777788888888777643 222211        3467777777777764


Q ss_pred             cCCcCccCCCcCcEEeCcCCcCCCccc-hhccCcCCCcEEECCCCcCCccCchh----------hhcCCCCCEEE
Q 038858          558 DIPPQIGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNGKIPCQ----------LVELNALVVFS  621 (740)
Q Consensus       558 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~  621 (740)
                      .  +.+..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       108 l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         108 L--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             H--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             c--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            3  246667777778887777775332 45777777777777777775433221          45567777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=2.7e-13  Score=125.20  Aligned_cols=131  Identities=21%  Similarity=0.206  Sum_probs=103.2

Q ss_pred             CcEEEcccc--cccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858          489 LSHLILAHN--NLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL  566 (740)
Q Consensus       489 L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  566 (740)
                      .+.+++.+.  .+. ..+..+..+++|++|++++|.|+.. + .+..        +++|+.|++++|.++ .+|..+..+
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~--------l~~L~~L~Ls~N~i~-~i~~~~~~~   92 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSG--------MENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHH--------HTTCCEEECCEEEEC-SCSSHHHHH
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccC--------CccccChhhcccccc-ccccccccc
Confidence            444555543  232 4556788899999999999999854 2 2433        789999999999998 455555666


Q ss_pred             CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc-hhhhcCCCCCEEEccCCcccccCCC
Q 038858          567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP-CQLVELNALVVFSVAYNNLSGKIPE  633 (740)
Q Consensus       567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~  633 (740)
                      ++|+.|++++|+++..  +.+..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+.
T Consensus        93 ~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_          93 DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            7899999999999963  568899999999999999985432 4688999999999999999876554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.9e-11  Score=107.58  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=62.7

Q ss_pred             ccccceEEccCc-cccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEE
Q 038858          542 LSLLSGIDLSCN-KLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVF  620 (740)
Q Consensus       542 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  620 (740)
                      +++|++|++++| .++.+.+.+|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|++|+++...+..|. ...|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccccc
Confidence            456666776554 36655566788888888888888888877778888888888888888888744444443 4468888


Q ss_pred             EccCCccc
Q 038858          621 SVAYNNLS  628 (740)
Q Consensus       621 ~l~~N~l~  628 (740)
                      ++++|++.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            88888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.3e-08  Score=87.05  Aligned_cols=62  Identities=26%  Similarity=0.186  Sum_probs=24.4

Q ss_pred             cccceEEccCccccccC--CcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858          543 SLLSGIDLSCNKLIGDI--PPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN  604 (740)
Q Consensus       543 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  604 (740)
                      +.|++|++++|+|+...  +..+..+++|+.|+|++|.|+....-.+.....|+.|++++|++.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34444444444444221  122333444444444444444322222222233444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.3e-07  Score=79.69  Aligned_cols=68  Identities=24%  Similarity=0.198  Sum_probs=40.3

Q ss_pred             ccCCCcCcEEeCcCCcCCCcc--chhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858          563 IGNLTRIQTLNLSHNNLTGTI--LSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK  630 (740)
Q Consensus       563 ~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  630 (740)
                      +..+++|++|+|++|+|+...  +..+..+++|+.|++++|.++...+-.+.....|+.+++++|+++..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            345566667777777666432  34455666677777777766644333333445566666777766544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=4.5e-06  Score=73.39  Aligned_cols=114  Identities=12%  Similarity=0.166  Sum_probs=59.3

Q ss_pred             ccccCcEEEcccc-ccccc----ccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccC
Q 038858          485 GLLRLSHLILAHN-NLEGE----VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDI  559 (740)
Q Consensus       485 ~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  559 (740)
                      +.++|++|+|+++ .++..    +...+...+.|++|+|++|.+.......+                            
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~l----------------------------   64 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL----------------------------   64 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH----------------------------
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHH----------------------------
Confidence            3466777777653 34322    22234555666666666665542211111                            


Q ss_pred             CcCccCCCcCcEEeCcCCcCCCc----cchhccCcCCCcEEECCCCcCCcc-------CchhhhcCCCCCEEEccCCc
Q 038858          560 PPQIGNLTRIQTLNLSHNNLTGT----ILSTFTNLRHIESLDLYHNKLNGK-------IPCQLVELNALVVFSVAYNN  626 (740)
Q Consensus       560 ~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~l~~N~  626 (740)
                      ...+...+.|++|+|++|.++..    +..++...++|++|++++|.+...       +...+...++|+.|+++++.
T Consensus        65 a~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          65 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            12233345566666666666532    223455556677777766654422       23344456677777766654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=8.2e-06  Score=71.65  Aligned_cols=66  Identities=14%  Similarity=0.070  Sum_probs=39.2

Q ss_pred             CCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc-------cCccccCCCCCCEEEccCCcC
Q 038858          108 MPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS-------LPWCLANMTSLRTLDVSSNQL  173 (740)
Q Consensus       108 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~-------~~~~l~~l~~L~~L~L~~n~l  173 (740)
                      .+.|++|++++|.++.........++...+.|++|++++|.+...       +...+...++|+.|+++.+..
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            566666666666655222121222466667788888877754421       334455668888888877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=6.8e-05  Score=65.53  Aligned_cols=67  Identities=15%  Similarity=0.118  Sum_probs=31.0

Q ss_pred             CCCCCEEeCCC-CCCCCCCC-CCccccCCCCCCcEEECCCCCCcccchHHHHh---cCCCCCEEEcCCCCCC
Q 038858            4 FSSLNTLCLMD-NNLTEIVT-TTTQELHNFTNLEYLTLDFSSLHISLLQSIAS---IFPSLKSLSMIDCKVN   70 (740)
Q Consensus         4 l~~L~~L~Ls~-n~i~~~~~-~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~---~l~~L~~L~l~~~~~~   70 (740)
                      .+.|++|+|++ +.++.... .....+...++|++|++++|.+.......+++   ..++++.+++.+|.+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            45566666655 23432210 01133445556666666666555443333221   1445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.23  E-value=5.2e-05  Score=66.32  Aligned_cols=91  Identities=15%  Similarity=0.093  Sum_probs=48.0

Q ss_pred             CCCCCCEEecCCCccccCccch----HHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEcc--CCcccc--
Q 038858           80 HFKSLEYLDMNTACIALNASFL----QIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMA--NNDLRG--  151 (740)
Q Consensus        80 ~l~~L~~L~L~~~~i~~~~~~~----~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~--~n~i~~--  151 (740)
                      ..++|++|++++|.  +.....    ..+.. .+.++.+++++|.++..........+...+.|+.++|+  +|.+..  
T Consensus        44 ~n~~L~~L~Ls~n~--l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          44 TNTYVKKFSIVGTR--SNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             TCCSCCEEECTTSC--CCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             cCCccCeeeccCCc--ccHHHHHHHHHHHhh-cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            34455555555552  222222    22333 56666777666655422211112255666777765554  455543  


Q ss_pred             --ccCccccCCCCCCEEEccCCcC
Q 038858          152 --SLPWCLANMTSLRTLDVSSNQL  173 (740)
Q Consensus       152 --~~~~~l~~l~~L~~L~L~~n~l  173 (740)
                        .+...+...+.|++|+++.+..
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCCC
Confidence              2334456778888888877653