Citrus Sinensis ID: 038873


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80------
VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCAKVQ
ccEEEEcccccccccHHHHcccccccccccEEEEEccEEEEHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHccccccc
cccEEEcccccccccHHEEcccccccccccEEEEEEEEEccHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHcccc
vlgvyewsgnnplppeiwllpyflpfhpgrmwchcrmvylpmsylygtrfvgpfNSLILSLRKELytlpyhyidwdhARNLCAKVQ
vlgvyewsgnnplppEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCAKVQ
VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCAKVQ
***VYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCA***
VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCA***
VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCAKVQ
VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCAK**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARNLCAKVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query86 2.2.26 [Sep-21-2011]
Q9SXV6 757 Cycloartenol synthase OS= N/A no 0.976 0.110 0.869 3e-39
P38605 759 Cycloartenol synthase OS= yes no 0.976 0.110 0.821 7e-39
Q8W3Z3 757 Cycloartenol synthase 2 O N/A no 0.976 0.110 0.809 7e-38
Q6BE24 764 Cucurbitadienol synthase N/A no 0.976 0.109 0.821 8e-38
Q2XPU6 759 Cycloartenol synthase OS= N/A no 0.976 0.110 0.821 8e-38
Q8W3Z4 767 Cycloartenol synthase OS= N/A no 0.976 0.109 0.833 8e-38
Q6Z2X6 759 Cycloartenol synthase OS= yes no 0.976 0.110 0.785 5e-37
E2IUB0 764 Cycloartenol synthase OS= N/A no 0.976 0.109 0.785 9e-37
Q6BE23 759 Probable oxidosqualene cy N/A no 0.976 0.110 0.809 1e-36
O82139 758 Cycloartenol Synthase OS= N/A no 0.976 0.110 0.785 3e-36
>sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase OS=Glycyrrhiza glabra GN=GgCAS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%)

Query: 1   VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60
           VLGVYEWSGNNPLPPEIWLLPY LP HPGRMWCHCRMVYLPMSYLYG RFVGP    ILS
Sbjct: 224 VLGVYEWSGNNPLPPEIWLLPYVLPIHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTILS 283

Query: 61  LRKELYTLPYHYIDWDHARNLCAK 84
           LRKELYT+PYH IDW+ ARNLCAK
Sbjct: 284 LRKELYTIPYHDIDWNQARNLCAK 307




Oxidosqualene cyclase converting oxidosqualene to cycloartenol. Required for the production of sterols.
Glycyrrhiza glabra (taxid: 49827)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 8
>sp|P38605|CAS1_ARATH Cycloartenol synthase OS=Arabidopsis thaliana GN=CAS1 PE=1 SV=2 Back     alignment and function description
>sp|Q8W3Z3|CAS2_BETPL Cycloartenol synthase 2 OS=Betula platyphylla GN=CASBPX2 PE=1 SV=1 Back     alignment and function description
>sp|Q6BE24|CUCS_CUCPE Cucurbitadienol synthase OS=Cucurbita pepo GN=CPQ PE=1 SV=1 Back     alignment and function description
>sp|Q2XPU6|CAS1_RICCO Cycloartenol synthase OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z4|CAS1_BETPL Cycloartenol synthase OS=Betula platyphylla GN=CASBPX1 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z2X6|CAS_ORYSJ Cycloartenol synthase OS=Oryza sativa subsp. japonica GN=Os02g0139700 PE=1 SV=1 Back     alignment and function description
>sp|E2IUB0|CASS_KALDA Cycloartenol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q6BE23|OXSC_CUCPE Probable oxidosqualene cyclase OS=Cucurbita pepo GN=CPR PE=2 SV=1 Back     alignment and function description
>sp|O82139|CAS1_PANGI Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
356495982 757 PREDICTED: cycloartenol synthase [Glycin 0.976 0.110 0.880 8e-39
164521140 758 cycloartenol synthase [Panax notoginseng 0.976 0.110 0.845 5e-38
75266680 757 RecName: Full=Cycloartenol synthase gi|4 0.976 0.110 0.869 1e-37
83016479 757 cycloartenol synthase [Lotus japonicus] 0.976 0.110 0.857 1e-37
443299069 758 cycloartenol synthase protein [Azadirach 0.976 0.110 0.845 2e-37
378926314 758 cycloartenol synthase [Eleutherococcus s 0.976 0.110 0.845 3e-37
297831748 759 cycloartenol synthase [Arabidopsis lyrat 0.976 0.110 0.821 3e-37
225445640 760 PREDICTED: cycloartenol Synthase isoform 0.976 0.110 0.845 3e-37
15225650 759 cycloartenol synthase [Arabidopsis thali 0.976 0.110 0.821 3e-37
452446 759 cycloartenol synthase [Arabidopsis thali 0.976 0.110 0.821 3e-37
>gi|356495982|ref|XP_003516849.1| PREDICTED: cycloartenol synthase [Glycine max] Back     alignment and taxonomy information
 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/84 (88%), Positives = 77/84 (91%)

Query: 1   VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60
           VLGVYEWSGNNPLPPEIWLLPY LPFHPGRMWCHCRMVYLPMSYLYG RFVGP +  +LS
Sbjct: 224 VLGVYEWSGNNPLPPEIWLLPYMLPFHPGRMWCHCRMVYLPMSYLYGKRFVGPISPTVLS 283

Query: 61  LRKELYTLPYHYIDWDHARNLCAK 84
           LRKELYT+PYH IDWD ARNLCAK
Sbjct: 284 LRKELYTVPYHDIDWDQARNLCAK 307




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164521140|gb|ABY60426.1| cycloartenol synthase [Panax notoginseng] Back     alignment and taxonomy information
>gi|75266680|sp|Q9SXV6.1|CAS1_GLYGL RecName: Full=Cycloartenol synthase gi|4589852|dbj|BAA76902.1| cycloartenol synthase [Glycyrrhiza glabra] Back     alignment and taxonomy information
>gi|83016479|dbj|BAE53431.1| cycloartenol synthase [Lotus japonicus] Back     alignment and taxonomy information
>gi|443299069|gb|AGC82085.1| cycloartenol synthase protein [Azadirachta indica] Back     alignment and taxonomy information
>gi|378926314|gb|AFC67276.1| cycloartenol synthase [Eleutherococcus senticosus] Back     alignment and taxonomy information
>gi|297831748|ref|XP_002883756.1| cycloartenol synthase [Arabidopsis lyrata subsp. lyrata] gi|297329596|gb|EFH60015.1| cycloartenol synthase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225445640|ref|XP_002264289.1| PREDICTED: cycloartenol Synthase isoform 1 [Vitis vinifera] gi|297736039|emb|CBI24077.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15225650|ref|NP_178722.1| cycloartenol synthase [Arabidopsis thaliana] gi|21542399|sp|P38605.2|CAS1_ARATH RecName: Full=Cycloartenol synthase; Short=AtCYC; AltName: Full=2,3-epoxysqualene--cycloartenol cyclase gi|20197302|gb|AAM15015.1| cycloartenol synthase [Arabidopsis thaliana] gi|20453056|gb|AAM19773.1| At2g07050/T4E14.16 [Arabidopsis thaliana] gi|24796994|gb|AAN64509.1| At2g07050/T4E14.16 [Arabidopsis thaliana] gi|330250938|gb|AEC06032.1| cycloartenol synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|452446|gb|AAC04931.1| cycloartenol synthase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
TAIR|locus:2060121 759 CAS1 "cycloartenol synthase 1" 0.976 0.110 0.821 2.2e-38
UNIPROTKB|Q6BE24 764 CPQ "Cucurbitadienol synthase" 0.976 0.109 0.821 1e-37
UNIPROTKB|Q2XPU6 759 Q2XPU6 "Cycloartenol synthase" 0.976 0.110 0.821 1.2e-37
TAIR|locus:2096905 756 LAS1 "lanosterol synthase 1" [ 0.976 0.111 0.833 1.6e-37
UNIPROTKB|Q8W3Z3 757 CASBPX2 "Cycloartenol synthase 0.976 0.110 0.809 1.6e-37
UNIPROTKB|Q8W3Z4 767 CASBPX1 "Cycloartenol synthase 0.976 0.109 0.833 2.7e-37
UNIPROTKB|E2IUB0 764 E2IUB0 "Cycloartenol synthase" 0.976 0.109 0.785 1.2e-36
UNIPROTKB|Q6BE25 766 CPX "Cycloartenol synthase" [C 0.976 0.109 0.785 4.3e-36
UNIPROTKB|O82139 758 OSCPNX1 "Cycloartenol Synthase 0.976 0.110 0.785 1.1e-35
UNIPROTKB|Q8W3Z1 779 OSCBPY "Beta-amyrin synthase" 0.976 0.107 0.666 7.5e-32
TAIR|locus:2060121 CAS1 "cycloartenol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 418 (152.2 bits), Expect = 2.2e-38, P = 2.2e-38
 Identities = 69/84 (82%), Positives = 76/84 (90%)

Query:     1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60
             VLG +EWSGNNPLPPEIWLLPYFLP HPGRMWCHCRMVYLPMSYLYG RFVGP  S +LS
Sbjct:   224 VLGAFEWSGNNPLPPEIWLLPYFLPIHPGRMWCHCRMVYLPMSYLYGKRFVGPITSTVLS 283

Query:    61 LRKELYTLPYHYIDWDHARNLCAK 84
             LRKEL+T+PYH ++W+ ARNLCAK
Sbjct:   284 LRKELFTVPYHEVNWNEARNLCAK 307




GO:0003824 "catalytic activity" evidence=IEA
GO:0016866 "intramolecular transferase activity" evidence=IEA
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=ISS;IDA;RCA
GO:0005773 "vacuole" evidence=IDA
GO:0009555 "pollen development" evidence=IMP
GO:0010027 "thylakoid membrane organization" evidence=IMP
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0016871 "cycloartenol synthase activity" evidence=IDA
UNIPROTKB|Q6BE24 CPQ "Cucurbitadienol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU6 Q2XPU6 "Cycloartenol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
TAIR|locus:2096905 LAS1 "lanosterol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z3 CASBPX2 "Cycloartenol synthase 2" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z4 CASBPX1 "Cycloartenol synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUB0 E2IUB0 "Cycloartenol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q6BE25 CPX "Cycloartenol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
UNIPROTKB|O82139 OSCPNX1 "Cycloartenol Synthase" [Panax ginseng (taxid:4054)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z2X6CAS_ORYSJ5, ., 4, ., 9, 9, ., 80.78570.97670.1106yesno
P38605CAS1_ARATH5, ., 4, ., 9, 9, ., 80.82140.97670.1106yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
PLN03012 759 PLN03012, PLN03012, Camelliol C synthase 5e-41
cd02892 634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 9e-41
PLN02993 763 PLN02993, PLN02993, lupeol synthase 2e-40
TIGR03463 634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 2e-28
TIGR01787 621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 4e-26
COG1657 517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 5e-07
COG1657517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 5e-04
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
 Score =  141 bits (357), Expect = 5e-41
 Identities = 55/84 (65%), Positives = 69/84 (82%)

Query: 1   VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60
           +LGV++WSG+NP+PPE W+LP F P HP +MWC+CR+VYLPMSYLYG RFVGP + LIL 
Sbjct: 227 ILGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQ 286

Query: 61  LRKELYTLPYHYIDWDHARNLCAK 84
           LR+E+Y  PY  I+W  AR+LCAK
Sbjct: 287 LREEIYLQPYAEINWMKARHLCAK 310


Length = 759

>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 86
PLN03012 759 Camelliol C synthase 100.0
PLN02993 763 lupeol synthase 100.0
TIGR03463 634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.96
KOG0497 760 consensus Oxidosqualene-lanosterol cyclase and rel 99.95
cd02892 634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.95
TIGR01507 635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.9
TIGR01787 621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.85
COG1657 517 SqhC Squalene cyclase [Lipid metabolism] 98.08
KOG0497 760 consensus Oxidosqualene-lanosterol cyclase and rel 93.12
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 88.83
>PLN03012 Camelliol C synthase Back     alignment and domain information
Probab=100.00  E-value=3e-34  Score=236.49  Aligned_cols=86  Identities=64%  Similarity=1.430  Sum_probs=84.8

Q ss_pred             CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873            1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN   80 (86)
Q Consensus         1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~   80 (86)
                      +||+|+|+|+|+|||||||||+|+|||++|||||||+||+||+||+++||+++.++++.+||+|||++||++|+|.++||
T Consensus       227 ~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~  306 (759)
T PLN03012        227 ILGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARH  306 (759)
T ss_pred             HcCccccCCCCCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 038873           81 LCAKVQ   86 (86)
Q Consensus        81 ~~~~~d   86 (86)
                      +||++|
T Consensus       307 ~~a~~D  312 (759)
T PLN03012        307 LCAKED  312 (759)
T ss_pred             cccccc
Confidence            999998



>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
1w6k_A 732 Structure Of Human Osc In Complex With Lanosterol L 2e-19
1w6j_A 732 Structure Of Human Osc In Complex With Ro 48-8071 L 2e-19
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure

Iteration: 1

Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/83 (51%), Positives = 50/83 (60%) Query: 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60 VL VY W G N L PE+WL P + P HP +WCHCR VYLPMSY Y R + L+ S Sbjct: 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 258 Query: 61 LRKELYTLPYHYIDWDHARNLCA 83 LR+ELY + IDW RN A Sbjct: 259 LRQELYVEDFASIDWLAQRNNVA 281
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 6e-27
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 6e-17
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  101 bits (251), Expect = 6e-27
 Identities = 42/82 (51%), Positives = 49/82 (59%)

Query: 2   LGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSL 61
           L VY W G N L PE+WL P + P HP  +WCHCR VYLPMSY Y  R     + L+ SL
Sbjct: 200 LNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSL 259

Query: 62  RKELYTLPYHYIDWDHARNLCA 83
           R+ELY   +  IDW   RN  A
Sbjct: 260 RQELYVEDFASIDWLAQRNNVA 281


>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 99.97
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.91
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=99.97  E-value=1.6e-31  Score=217.46  Aligned_cols=86  Identities=50%  Similarity=0.993  Sum_probs=83.8

Q ss_pred             CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873            1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN   80 (86)
Q Consensus         1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~   80 (86)
                      +||+|+|+|+|+||||+||||+|+|||+++||||||+||+||+|++++||+++.+|++.+||+|||++||++|+|.++|+
T Consensus       199 ~~g~~~W~~~~~~PpE~~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~  278 (732)
T 1w6k_A          199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRN  278 (732)
T ss_dssp             HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTT
T ss_pred             HcCCCCcccCCCCCHHHHHccCcCCCCHHHHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhcc
Confidence            58999999999999999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             ccccCC
Q 038873           81 LCAKVQ   86 (86)
Q Consensus        81 ~~~~~d   86 (86)
                      .|+++|
T Consensus       279 ~~~~~d  284 (732)
T 1w6k_A          279 NVAPDE  284 (732)
T ss_dssp             CCCGGG
T ss_pred             cccccc
Confidence            999876



>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 86
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 1e-30
d2sqca2271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 5e-19
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]
 Score =  106 bits (267), Expect = 1e-30
 Identities = 43/84 (51%), Positives = 50/84 (59%)

Query: 1   VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60
           VL VY W G N L PE+WL P + P HP  +WCHCR VYLPMSY Y  R     + L+ S
Sbjct: 100 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 159

Query: 61  LRKELYTLPYHYIDWDHARNLCAK 84
           LR+ELY   +  IDW   RN  A 
Sbjct: 160 LRQELYVEDFASIDWLAQRNNVAP 183


>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.81
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00  E-value=1.6e-34  Score=213.61  Aligned_cols=86  Identities=50%  Similarity=0.993  Sum_probs=84.2

Q ss_pred             CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873            1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN   80 (86)
Q Consensus         1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~   80 (86)
                      +||+|+|+|+|+||||+||||+|+|||++++|||||+||+||+|++++|++++.+|+.+++|+|||.++|++|+|.++|+
T Consensus       100 ~~g~~~W~~~~~~P~E~~lLP~w~P~~~~~~~~~~R~v~vPls~l~~~r~~~~~~p~~~~lr~el~~~p~~~i~~~~~r~  179 (279)
T d1w6ka2         100 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRN  179 (279)
T ss_dssp             HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTT
T ss_pred             HcCccccccCCCCCHHHHhccccCccchHHhhhhhhhhhhhhHHHhhccccCCCCcHHHHHHHHhccCCccccccccccC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 038873           81 LCAKVQ   86 (86)
Q Consensus        81 ~~~~~d   86 (86)
                      .|+++|
T Consensus       180 ~~~~~d  185 (279)
T d1w6ka2         180 NVAPDE  185 (279)
T ss_dssp             CCCGGG
T ss_pred             ccCccc
Confidence            999886



>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure