Citrus Sinensis ID: 038881
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 794 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.858 | 0.900 | 0.480 | 0.0 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.926 | 0.949 | 0.412 | 1e-159 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.833 | 0.905 | 0.403 | 1e-139 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.855 | 0.906 | 0.407 | 1e-139 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.425 | 0.419 | 0.311 | 7e-30 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.420 | 0.285 | 0.281 | 1e-12 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.420 | 0.285 | 0.281 | 1e-12 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.419 | 0.285 | 0.278 | 3e-12 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.419 | 0.281 | 0.278 | 3e-11 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.421 | 0.283 | 0.277 | 4e-11 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/706 (48%), Positives = 456/706 (64%), Gaps = 24/706 (3%)
Query: 96 IFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVES 155
+ Y+Y I+GF+ +L A + P V+SV +LHTT + FLGL+ + +
Sbjct: 65 LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEH----T 120
Query: 156 NSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKD-AKFLCNRKL 214
++ +A D ++G LDTGVWPESKS+SDEG GPIPS WKG CE + LCNRKL
Sbjct: 121 ADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKL 180
Query: 215 IGARYFNKGYAAAVGPLNSSFDT--PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKG 272
IGAR+F +GY + +GP++ S ++ PRD DGHGTHT STA G+ V AS+ G GTA+G
Sbjct: 181 IGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARG 240
Query: 273 GSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAI 332
+P+ARVA YKVCW C+ +DILAA D AI D V+VLS+SLGGG S ++ D AI
Sbjct: 241 MAPRARVAVYKVCWL----GGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAI 296
Query: 333 GSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQ 392
G+F A++ G++V CSAGN+GP+ S++SN+APW TVGA T+DRDFP+ ++ N K + G
Sbjct: 297 GAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGV 356
Query: 393 SL-SSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARI 451
SL + LP +KL P I A +A A LC GTL P+KVKGKI++C RG NAR+
Sbjct: 357 SLFKGEALP-DKLLPFIYAGNASNATNGN----LCMTGTLIPEKVKGKIVMCDRGINARV 411
Query: 452 DKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYL 511
KG AG VGM+LAN NG EL+AD HLLPA+ + G + V + P +
Sbjct: 412 QKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASI 471
Query: 512 TRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRR 571
+ T +G+KP+P++AAFSS+GP+S+ P ILKPD+ APGV I+AA+T AAGPT D R
Sbjct: 472 SILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSR 531
Query: 572 RIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSY 631
R+ FN +SGTSMSCPHVSG+ LLK++HPEWSPAAI+SA+MTTA + +L+ ++
Sbjct: 532 RVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATG 591
Query: 632 K-ATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRC--PE 688
K +TPF +GAGH+ P A +PGL+YDLT DYL FLCAL Y QI S + Y C +
Sbjct: 592 KPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSK 651
Query: 689 YVSTANFNYPSITV-PKLSGSIIVSRTVRNVGSPGTYIARVRNP-KGISVSVEPRSLKFL 746
S A+ NYPS V G+ +RTV +VG GTY +V + G+ +SVEP L F
Sbjct: 652 SYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFK 711
Query: 747 RVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQVRSPIVVN 792
E+K++ VT V + + + FG + W+D K H V SP+ ++
Sbjct: 712 EANEKKSYTVTFTVDSSKPSGSNS-FGSIEWSDGK-HVVGSPVAIS 755
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 324/785 (41%), Positives = 457/785 (58%), Gaps = 49/785 (6%)
Query: 37 PFPLILSFLFSMLQTHHCCQKGAHSHGPELSAVDLHRVTES----------HYEFLGSFL 86
PF L + FL + QK + V LH +E+ H FL +
Sbjct: 5 PFFLCIIFLLFCSSSSEILQKQTY-------IVQLHPNSETAKTFASKFDWHLSFLQEAV 57
Query: 87 HG----NDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSW 142
G + P + YSY I GFAA+L ++ A + P+VV+V + ++ TT+S+
Sbjct: 58 LGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSY 117
Query: 143 EFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGIC-E 201
+FLGL+ G ++ +W K+R+G+ TIIG LDTGVWPES SF D G+ IP KWKGIC E
Sbjct: 118 KFLGLDGFG---NSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQE 174
Query: 202 NDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS-----SFDTPRDKDGHGTHTLSTAGGNF 256
+ + CNRKLIGAR+F +G+ A P S + + RD GHGTHT ST GG+
Sbjct: 175 GESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSS 234
Query: 257 VAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSV 316
V+ A+V G G G A+G +P A +A YKVCW N CY +DILAA D+AI D VDVLS+
Sbjct: 235 VSMANVLGNGAGVARGMAPGAHIAVYKVCW----FNGCYSSDILAAIDVAIQDKVDVLSL 290
Query: 317 SLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRD 376
SLGG P ++D+ AIG+F A++ G+ VIC+AGN+GP +S+V+N APW T+GA T+DR
Sbjct: 291 SLGGFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRR 350
Query: 377 FPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKV 436
FP+ V ++N K G+SL P + + + + C G+L +++
Sbjct: 351 FPAVVRLANGKLLYGESL----YPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEI 406
Query: 437 KGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGAD 496
+GK+++C RG N R +KG+ AG V M+LAN + N E D HLLPA+ I +T+
Sbjct: 407 RGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVL 466
Query: 497 LFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAA 556
L VN+T +P + T +G AP +A FS++GPS P ILKPD+ APGV IIAA
Sbjct: 467 LKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAA 526
Query: 557 YTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
+ + GPT YD RR+ F +SGTSMSCPHVSGI L+++ +P WSPAAIKSA+MTTA
Sbjct: 527 WPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTAD 586
Query: 617 IQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQI 676
+ D +G+ + + A F+ GAGH+ P A++PGLVY++ DY+ +LC LG+ ++ I
Sbjct: 587 LYD-RQGKAIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDI 645
Query: 677 ALFSDKTYRCPEYVSTA---NFNYPSITVPKLSGSI--IVSRTVRNVGSPGT-YIARVRN 730
+ K C + + NYPSI V G +++R V NVGSP + Y V+
Sbjct: 646 LAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKA 705
Query: 731 PKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVF--GDLVWAD--DKQHQVR 786
P+GI V V P+ L F V + +++V ++K K F G L W + + +VR
Sbjct: 706 PEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVR 765
Query: 787 SPIVV 791
SPI V
Sbjct: 766 SPISV 770
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 294/729 (40%), Positives = 422/729 (57%), Gaps = 67/729 (9%)
Query: 78 HYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLH 137
H+ + + G+ +++ ++Y R NGFA KL + A +IA VVSVFLN+ +LH
Sbjct: 51 HHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELH 110
Query: 138 TTHSWEFLG----LERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIP 193
TT SW+FLG + R +VESN ++G LDTG+WPES SF DEG P P
Sbjct: 111 TTRSWDFLGFPLTVPRRSQVESN-----------IVVGVLDTGIWPESPSFDDEGFSPPP 159
Query: 194 SKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAG 253
KWKG CE + F CNRK+IGAR ++ G + G +N PRD +GHGTHT STA
Sbjct: 160 PKWKGTCETSNN--FRCNRKIIGARSYHIGRPISPGDVNG----PRDTNGHGTHTASTAA 213
Query: 254 GNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313
G V++A+++GLG GTA+GG P AR+AAYKVCW + C D DILAA+D AI DGVD+
Sbjct: 214 GGLVSQANLYGLGLGTARGGVPLARIAAYKVCW----NDGCSDTDILAAYDDAIADGVDI 269
Query: 314 LSVSLGGG-PSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGAST 372
+S+S+GG P +F D+ AIGSFHAV+ G++ SAGN GP T ++++PW ++V AST
Sbjct: 270 ISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAAST 329
Query: 373 MDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLD 432
MDR F + V + N + ++G S+++ N+ +PL+S D + C +++
Sbjct: 330 MDRKFVTQVQIGNGQSFQGVSINTF---DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVN 386
Query: 433 PKKVKGKILVCLRGDNARIDKGQQAL---LAGAVGMVLANAQENGNELLADPHLLPASHI 489
P +KGKI+VC G L GA G+++ + + AD + LP+S +
Sbjct: 387 PNLLKGKIVVC------EASFGPHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVL 436
Query: 490 NFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549
+ D R + S + P + ++TT L AP++ +FSS+GP+ +++KPDI+ P
Sbjct: 437 DPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGP 495
Query: 550 GVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKS 609
GV I+AA+ A P RR FN +SGTSMSCPH++GI +KT +P WSPAAIKS
Sbjct: 496 GVEILAAWPSVA-PVGG--IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKS 552
Query: 610 AIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCAL 669
A+MTTAS +NA F+YG+GH+ P A+ PGLVYD E+DY+ FLC
Sbjct: 553 ALMTTAS--------PMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQ 604
Query: 670 GYNKTQIALFSDKTYRCPEYVS--TANFNYPSITV---PKLSGSIIVSRTVRNVG-SPGT 723
GYN + + C + + NYPS + P + + +RT+ +V T
Sbjct: 605 GYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAST 664
Query: 724 YIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVF-GDLVWADDKQ 782
Y A + P+G+++SV P L F +G+ K+F +T VR + K +V LVW+ D
Sbjct: 665 YRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT-----VRGSIKGFVVSASLVWS-DGV 718
Query: 783 HQVRSPIVV 791
H VRSPI +
Sbjct: 719 HYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 296/727 (40%), Positives = 423/727 (58%), Gaps = 48/727 (6%)
Query: 76 ESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRK 135
++H L S + ++ YSYT+ N FAAKL A ++ + +VVSV NQ RK
Sbjct: 54 KTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRK 113
Query: 136 LHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSK 195
LHTT SW+F+GL + + + D IIG LDTG+ P+S+SF D GLGP P+K
Sbjct: 114 LHTTKSWDFVGLPLTAK-------RHLKAERDVIIGVLDTGITPDSESFLDHGLGPPPAK 166
Query: 196 WKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGN 255
WKG C K+ CN K+IGA+YF G + S P D DGHGTHT ST G
Sbjct: 167 WKGSCGPYKNFTG-CNNKIIGAKYFKHDGNVPAGEVRS----PIDIDGHGTHTSSTVAGV 221
Query: 256 FVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLS 315
VA AS++G+ GTA+G P AR+A YKVCW + C D DILA F+ AIHDGV+++S
Sbjct: 222 LVANASLYGIANGTARGAVPSARLAMYKVCW---ARSGCADMDILAGFEAAIHDGVEIIS 278
Query: 316 VSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDR 375
+S+GG + + +DS ++GSFHA++ G++ + SAGN GP+ TV+N PW +TV AS +DR
Sbjct: 279 ISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDR 338
Query: 376 DFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKK 435
F S + + N K + G +S P K +PL+S DA +A C + +LD KK
Sbjct: 339 TFKSKIDLGNGKSFSGMGISMFS-PKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKK 397
Query: 436 VKGKILVCLRGDNARIDKGQQALLA--GAVGMVLANAQENGNELLADPHLLPASHINFTD 493
VKGK++VC G G ++ + G G ++ + Q N A + PA+ +N +
Sbjct: 398 VKGKVMVCRMGGG-----GVESTIKSYGGAGAIIVSDQYLDN---AQIFMAPATSVNSSV 449
Query: 494 GADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTI 553
G ++R +NST R + + T ++ + PAP +A+FSS+GP+ + +LKPDI APG+ I
Sbjct: 450 GDIIYRYINST-RSASAVIQKTRQVTI-PAPFVASFSSRGPNPGSIRLLKPDIAAPGIDI 507
Query: 554 IAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMT 613
+AA+T T D D + F LSGTSM+CPHV+G+ +K+ HP+W+PAAIKSAI+T
Sbjct: 508 LAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIIT 567
Query: 614 TASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNK 673
+A + ++ K F+YG G I P A PGLVYD+ + Y+ FLC GYN
Sbjct: 568 SA--------KPISRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNA 619
Query: 674 TQIA-LFSDKTYRCPEYVSTA---NFNYPSITV----PKLSGSIIVSRTVRNVGSPGT-Y 724
T +A L ++ C V + NYP+I + K S + R V NVG P + Y
Sbjct: 620 TTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVY 679
Query: 725 IARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQ 784
A VR PKG+ ++VEP+SL F + ++++FKV +K +++ V G LVW + H
Sbjct: 680 TATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPG--KIVSGLLVWKSPR-HS 736
Query: 785 VRSPIVV 791
VRSPIV+
Sbjct: 737 VRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 186/389 (47%), Gaps = 51/389 (13%)
Query: 244 HGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303
HGTH T N GT KG +P A + AY+V P G +++A
Sbjct: 233 HGTHVAGTVAAN------------GTIKGVAPDATLLAYRVLGP---GGSGTTENVIAGV 277
Query: 304 DMAIHDGVDVLSVSLGGGPSK-FFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN-- 360
+ A+ DG DV+++SLG + + STA+ A+ G+V + S GNSGP TV +
Sbjct: 278 ERAVQDGADVMNLSLGNSLNNPDWATSTALD--WAMSEGVVAVTSNGNSGPNGWTVGSPG 335
Query: 361 IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANAST 420
+ I+VGA+ + + Y V G S+K + NK D KA N +
Sbjct: 336 TSREAISVGATQLPLN--EYAVTF------GSYSSAKVMGYNK------EDDVKALN-NK 380
Query: 421 EVAL----LCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE 476
EV L + EA + K + GK+ V RG A +DK A AGA+GMV+ N E
Sbjct: 381 EVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIE 440
Query: 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSS 536
+P ++ DG L + + + + + LG + +A FSS+GP
Sbjct: 441 ANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTFKLTVSKALGEQ----VADFSSRGPV- 495
Query: 537 VAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLK 596
+ ++KPDI+APGV I++ PT++ + + GTSM+ PH++G V ++K
Sbjct: 496 MDTWMIKPDISAPGVNIVSTI-----PTHDP--DHPYGYGSKQGTSMASPHIAGAVAVIK 548
Query: 597 TLHPEWSPAAIKSAIMTTASIQDNNKGQI 625
P+WS IK+AIM TA ++ G++
Sbjct: 549 QAKPKWSVEQIKAAIMNTAVTLKDSDGEV 577
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 179/401 (44%), Gaps = 67/401 (16%)
Query: 244 HGTHTLSTAGGNFVAKASV-FGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAA 302
HGTH GN ++ + L +G P+A++ +V V G Y + A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEI--VNGLADYARNYAQA 247
Query: 303 FDMAIHDGVDVLSVSLGGGPSKFFN--DSTAIGSFHAVKHGMVVICSAGNS----GPTDS 356
A++ G V+++S G + N D T +A G+ ++ SAGN G T
Sbjct: 248 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 307
Query: 357 TVSN-----------IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405
+++ A +TV + + D+ V K Q L +N+
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV---KTADQQDKEMPVLSTNRFE 364
Query: 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465
P A D AN T+ D K VKGKI + RGD DK A AGAVG+
Sbjct: 365 P-NKAYDYAYANRGTKED--------DFKDVKGKIALIERGDIDFKDKIANAKKAGAVGV 415
Query: 466 VLANAQENGNEL-LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTE-LGLKPA 523
++ + Q+ G + L + +PA+ I+ DG L +D ++K+ + + AT + L
Sbjct: 416 LIYDNQDKGFPIELPNVDQMPAAFISRKDGL-LLKD--NSKKTITF--NATPKVLPTASG 470
Query: 524 PIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSM 583
++ FSS G + A +KPDI APG I+++ N Y + LSGTSM
Sbjct: 471 TKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSV------ANNKYAK-------LSGTSM 515
Query: 584 SCPHVSGIVGLLK----TLHPEWSPAA----IKSAIMTTAS 616
S P V+GI+GLL+ T +P+ +P+ K +M++A+
Sbjct: 516 SAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 556
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 179/401 (44%), Gaps = 67/401 (16%)
Query: 244 HGTHTLSTAGGNFVAKASV-FGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAA 302
HGTH GN ++ + L +G P+A++ +V V G Y + A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEI--VNGLADYARNYAQA 247
Query: 303 FDMAIHDGVDVLSVSLGGGPSKFFN--DSTAIGSFHAVKHGMVVICSAGNS----GPTDS 356
A++ G V+++S G + N D T +A G+ ++ SAGN G T
Sbjct: 248 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 307
Query: 357 TVSN-----------IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405
+++ A +TV + + D+ V K Q L +N+
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV---KTADQQDKEMPVLSTNRFE 364
Query: 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465
P A D AN T+ D K VKGKI + RGD DK A AGAVG+
Sbjct: 365 P-NKAYDYAYANRGTKED--------DFKDVKGKIALIERGDIDFKDKIANAKKAGAVGV 415
Query: 466 VLANAQENGNEL-LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTE-LGLKPA 523
++ + Q+ G + L + +PA+ I+ DG L +D ++K+ + + AT + L
Sbjct: 416 LIYDNQDKGFPIELPNVDQMPAAFISRKDGL-LLKD--NSKKTITF--NATPKVLPTASG 470
Query: 524 PIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSM 583
++ FSS G + A +KPDI APG I+++ N Y + LSGTSM
Sbjct: 471 TKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSV------ANNKYAK-------LSGTSM 515
Query: 584 SCPHVSGIVGLLK----TLHPEWSPAA----IKSAIMTTAS 616
S P V+GI+GLL+ T +P+ +P+ K +M++A+
Sbjct: 516 SAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 556
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 176/402 (43%), Gaps = 69/402 (17%)
Query: 244 HGTHTLSTAGGNFVAKASV-FGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAA 302
HGTH GN ++ + L +G P+A++ +V V G Y + A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEI--VNGLADYARNYAQA 245
Query: 303 FDMAIHDGVDVLSVSLGGGPSKFFN--DSTAIGSFHAVKHGMVVICSAGNS----GPTDS 356
A++ G V+++S G + N D T +A G+ ++ SAGN G T
Sbjct: 246 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 357 TVSN-----------IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405
+++ A +TV + + D+ +V + + Q L +N+
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQ---QDKEMPVLSTNRFE 362
Query: 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465
P A D AN + D K VKGKI + RGD DK A AGAVG+
Sbjct: 363 P-NKAYDYAYANRGMKED--------DFKDVKGKIALIERGDIDFKDKVANAKKAGAVGV 413
Query: 466 VLANAQENGNEL-LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAP 524
++ + Q+ G + L + +PA+ I+ DG L +D P +T T L A
Sbjct: 414 LIYDNQDKGFPIELPNVDQMPAAFISRKDGL-LLKD-----NPQKTITFNATPKVLPTAS 467
Query: 525 --IMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTS 582
++ FSS G + A +KPDI APG I+++ N Y + LSGTS
Sbjct: 468 GTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSV------ANNKYAK-------LSGTS 512
Query: 583 MSCPHVSGIVGLLK----TLHPEWSPAA----IKSAIMTTAS 616
MS P V+GI+GLL+ T +P+ +P+ K +M++A+
Sbjct: 513 MSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 554
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 173/402 (43%), Gaps = 69/402 (17%)
Query: 244 HGTHTLSTAGGNFVAKASV-FGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAA 302
HGTH GN ++ + L +G P+A++ +V V G Y + A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEI--VNGLADYARNYAQA 245
Query: 303 FDMAIHDGVDVLSVSLGGGPSKFFN--DSTAIGSFHAVKHGMVVICSAGNS----GPTDS 356
A++ G V+++S G + N D T +A G+ ++ SAGN G T
Sbjct: 246 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 357 TVSN-----------IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405
+++ A +TV + + D+ V K Q L +N+
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV---KTADQQDKEMPVLSTNRFE 362
Query: 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465
P A D AN + D K VKGKI + RGD DK A AGAVG+
Sbjct: 363 P-NKAYDYAYANRGMKED--------DFKDVKGKIALIERGDIDFKDKIANAKKAGAVGV 413
Query: 466 VLANAQENGNEL-LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAP 524
++ + Q+ G + L + +PA+ I+ DG L + P +T T L A
Sbjct: 414 LIYDNQDKGFPIELPNVDQMPAAFISRKDGLLL------KENPQKTITFNATPKVLPTAS 467
Query: 525 --IMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTS 582
++ FSS G + A +KPDI APG I+++ N Y + LSGTS
Sbjct: 468 GTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSV------ANNKYAK-------LSGTS 512
Query: 583 MSCPHVSGIVGLLK----TLHPEWSPAA----IKSAIMTTAS 616
MS P V+GI+GLL+ T +P+ +P+ K +M++A+
Sbjct: 513 MSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 554
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 170/400 (42%), Gaps = 65/400 (16%)
Query: 244 HGTHTLSTAGGNFVAKASV-FGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAA 302
HGTH GN ++ + L +G P+A++ +V V G Y + A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEI--VNGLADYARNYAQA 245
Query: 303 FDMAIHDGVDVLSVSLGGGPSKFFN--DSTAIGSFHAVKHGMVVICSAGNS----GPTDS 356
A++ G V+++S G + N D T +A G+ ++ SAGN G T
Sbjct: 246 IIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 357 TVSN-----------IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405
+++ A +TV + + D+ V K Q L +N+
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV---KTADQQDKEMPVLSTNRFE 362
Query: 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465
P A D AN + D K VKGKI + RGD DK A AGAVG+
Sbjct: 363 P-NKAYDYAYANRGMKED--------DFKDVKGKIALIERGDIDFKDKIANAKKAGAVGV 413
Query: 466 VLANAQENGNEL-LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAP 524
++ + Q+ G + L + +PA+ I+ DG L + T T G K
Sbjct: 414 LIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKENPQKTITFNATPKVLPTASGTK--- 470
Query: 525 IMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMS 584
++ FSS G A +KPDI APG I+++ N Y + LSGTSMS
Sbjct: 471 -LSRFSSWG--LTADGNIKPDIAAPGQDILSSV------ANNKYAK-------LSGTSMS 514
Query: 585 CPHVSGIVGLLK----TLHPEWSPAA----IKSAIMTTAS 616
P V+GI+GLL+ T +P+ +P+ K +M++A+
Sbjct: 515 APLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 554
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 794 | ||||||
| 224129258 | 769 | predicted protein [Populus trichocarpa] | 0.947 | 0.977 | 0.723 | 0.0 | |
| 225447456 | 769 | PREDICTED: subtilisin-like protease [Vit | 0.937 | 0.967 | 0.742 | 0.0 | |
| 227053577 | 771 | subtilisin-like serine protease [Carica | 0.937 | 0.964 | 0.721 | 0.0 | |
| 356510927 | 773 | PREDICTED: subtilisin-like protease-like | 0.931 | 0.957 | 0.703 | 0.0 | |
| 449453760 | 758 | PREDICTED: subtilisin-like protease-like | 0.944 | 0.989 | 0.696 | 0.0 | |
| 255567212 | 771 | Xylem serine proteinase 1 precursor, put | 0.921 | 0.949 | 0.736 | 0.0 | |
| 357462409 | 772 | Subtilisin-like protease [Medicago trunc | 0.920 | 0.946 | 0.693 | 0.0 | |
| 356525207 | 773 | PREDICTED: subtilisin-like protease-like | 0.920 | 0.945 | 0.704 | 0.0 | |
| 409032218 | 773 | subtilisin-like protease [Glycine max] | 0.920 | 0.945 | 0.701 | 0.0 | |
| 225462068 | 745 | PREDICTED: subtilisin-like protease-like | 0.921 | 0.982 | 0.692 | 0.0 |
| >gi|224129258|ref|XP_002320540.1| predicted protein [Populus trichocarpa] gi|222861313|gb|EEE98855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1138 bits (2943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/764 (72%), Positives = 635/764 (83%), Gaps = 12/764 (1%)
Query: 37 PFPLILSFLFSMLQTH--------HCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHG 88
P +L FLF L + G HSHGP+ S+ D + +SHYEFLGSFL
Sbjct: 6 PTLCLLPFLFLTLVQRPTFASIKPYVVYFGGHSHGPKPSSFDANLAKDSHYEFLGSFLGS 65
Query: 89 NDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLE 148
+ EDAIFYSYTRHINGFAA L+D VAAEIAKHP+VVSVFLNQGRK HTTHSW FLGLE
Sbjct: 66 REFAEDAIFYSYTRHINGFAATLEDEVAAEIAKHPRVVSVFLNQGRKQHTTHSWSFLGLE 125
Query: 149 RNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKF 208
++G V S+SIWKKAR+GED IIGNLDTGVWPES+SFSDEGLGP+PSKWKGIC+N D F
Sbjct: 126 KDGVVPSSSIWKKARFGEDAIIGNLDTGVWPESESFSDEGLGPVPSKWKGICQNGYDPGF 185
Query: 209 LCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKG 268
CNRKLIGARYFNKGYA+ VG LNSSFDTPRD+DGHG+HTLSTAGGNFVA ASVF +G G
Sbjct: 186 HCNRKLIGARYFNKGYASIVGHLNSSFDTPRDEDGHGSHTLSTAGGNFVAGASVFYMGNG 245
Query: 269 TAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFND 328
TAKGGSPKARVAAYKVC+PPV G+EC+DADILAAFD AI DGVDVLSVSLGG P+ FFND
Sbjct: 246 TAKGGSPKARVAAYKVCYPPVDGDECFDADILAAFDAAISDGVDVLSVSLGGNPTAFFND 305
Query: 329 STAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKR 388
S AIGSFHAVKHG+VVICSAGNSGP D TVSN+APW+ITVGASTMDR+FPSYVV+ N
Sbjct: 306 SVAIGSFHAVKHGIVVICSAGNSGPVDGTVSNVAPWEITVGASTMDREFPSYVVLGNKIS 365
Query: 389 YKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDN 448
+KG+SLS+K LP NK FPL+SAADA+A NAS E ALLC+ G+LDP+K KGKILVCLRG N
Sbjct: 366 FKGESLSAKALPKNKFFPLMSAADARATNASVENALLCKDGSLDPEKAKGKILVCLRGIN 425
Query: 449 ARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPV 508
AR+DKGQQA LAGAVGMVLAN ++ GNE+LADPH+LP SHIN+T G +F+ +NST+ PV
Sbjct: 426 ARVDKGQQAALAGAVGMVLANNKDAGNEILADPHVLPVSHINYTSGVAIFKYINSTEYPV 485
Query: 509 GYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDY 568
Y+T T +G KPAP++AAFSSKGP++V PEILKPDITAPGV++IAAYT+A GPTN+D+
Sbjct: 486 AYITHPVTRIGTKPAPVVAAFSSKGPNTVTPEILKPDITAPGVSVIAAYTKAQGPTNQDF 545
Query: 569 DRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNA 628
D RR+ FN++SGTSMSCPHVSGIVGLLKTLHP WSPA+IKSAIMTTA QDN ILNA
Sbjct: 546 DTRRVLFNSVSGTSMSCPHVSGIVGLLKTLHPTWSPASIKSAIMTTAMTQDNTMEPILNA 605
Query: 629 SSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPE 688
+ KA+PFSYGAGHI+PN AMDPGLVYDLT NDYLN LCALGYN+TQI+ FSD Y CP
Sbjct: 606 NHTKASPFSYGAGHIRPNKAMDPGLVYDLTVNDYLNLLCALGYNETQISTFSDAPYECPS 665
Query: 689 Y-VSTANFNYPSITVPKLSGSIIVSRTVRNVGSPGTYIARVRNPKGISVSVEPRSLKFLR 747
+S ANFNYPSITVPK +GSI +SRTV+NVGSP TY R+R P G+SVSVEP+ L+F +
Sbjct: 666 KPISLANFNYPSITVPKFNGSITLSRTVKNVGSPSTYKLRIRKPTGVSVSVEPKKLEFKK 725
Query: 748 VGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQVRSPIVV 791
VGEEK F VT+K + A KDYVFG+L+W+D+K H VRSPIVV
Sbjct: 726 VGEEKAFTVTLKGKG--KAAKDYVFGELIWSDNK-HHVRSPIVV 766
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/746 (74%), Positives = 638/746 (85%), Gaps = 2/746 (0%)
Query: 49 LQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFA 108
++ + GAHSHGPE S+ DL +VTESHYEFLGSFL DN ++AI YSYTRHINGFA
Sbjct: 26 IERSYIVYLGAHSHGPEPSSDDLDQVTESHYEFLGSFLGSRDNAKEAIIYSYTRHINGFA 85
Query: 109 AKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDT 168
A L D AA+IA HPKVVSVFLN+GRKLHTT SW FLGLE +G + SNSIWKKAR+G+DT
Sbjct: 86 ATLQDHEAAQIANHPKVVSVFLNKGRKLHTTRSWHFLGLENDGIIPSNSIWKKARFGQDT 145
Query: 169 IIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAV 228
IIGNLDTGVWPES SFSDEG+GPIPS+W+GIC+NDKDA F CNRKLIGARYF++GYAAAV
Sbjct: 146 IIGNLDTGVWPESASFSDEGMGPIPSRWRGICQNDKDAGFHCNRKLIGARYFHQGYAAAV 205
Query: 229 GPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPP 288
G LNSSF TPRD +GHG+HTLSTAGGNFV ASVFG G GTAKGGSPKARVAAYKVCWPP
Sbjct: 206 GSLNSSFHTPRDTEGHGSHTLSTAGGNFVEGASVFGFGNGTAKGGSPKARVAAYKVCWPP 265
Query: 289 VTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSA 348
V GNEC+DADILAAFD+AIHDGVDVLS SLGG P+ FFNDS +IGSFHAVKHG+VV+CSA
Sbjct: 266 VGGNECFDADILAAFDIAIHDGVDVLSASLGGLPTPFFNDSLSIGSFHAVKHGIVVVCSA 325
Query: 349 GNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLI 408
GNSGP D TVSNI+PWQ TVGASTMDR FPSY+V+ N KR +G SLS K LP NK FPLI
Sbjct: 326 GNSGPADGTVSNISPWQFTVGASTMDRQFPSYLVLGNKKRLEGGSLSPKALPPNKFFPLI 385
Query: 409 SAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLA 468
SAADAKAANAS + ALLC+AGTLD KVKGKILVCLRG+NAR+DKGQQA LAGAVGMVLA
Sbjct: 386 SAADAKAANASADDALLCKAGTLDHSKVKGKILVCLRGENARVDKGQQAALAGAVGMVLA 445
Query: 469 NAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAA 528
N + GNE++ADPH+LPASHINFTDG +F +NSTK P+ Y+T +TTELG KPAP MAA
Sbjct: 446 NNELTGNEVIADPHVLPASHINFTDGVAVFTYLNSTKSPIAYITPSTTELGTKPAPFMAA 505
Query: 529 FSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHV 588
FSSKGP+++ PEILKPDITAPGV++IAAYTEA GPTN+D+D+RR+ FN++SGTSMSCPHV
Sbjct: 506 FSSKGPNTITPEILKPDITAPGVSVIAAYTEAQGPTNQDFDKRRVLFNSVSGTSMSCPHV 565
Query: 589 SGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLA 648
SGIVGLLKTLHP+WSPAAI+SA+MTTA DN+ ILNAS +KATPFSYGAGH++PN A
Sbjct: 566 SGIVGLLKTLHPDWSPAAIRSAMMTTARTMDNSMEAILNASYFKATPFSYGAGHVRPNRA 625
Query: 649 MDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLSGS 708
M+PGLVYDL NDYLNFLCALGYN+T I +FS++ Y CP+ +S NFNYPSITVPKL GS
Sbjct: 626 MNPGLVYDLNVNDYLNFLCALGYNQTLIKMFSERPYTCPKPISLTNFNYPSITVPKLHGS 685
Query: 709 IIVSRTVRNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATK 768
I V+RT++NVG PGTY AR+R P GISVSV+P SLKF ++GEEK F +T++ + AA +
Sbjct: 686 ITVTRTLKNVGPPGTYKARIRKPTGISVSVKPDSLKFNKIGEEKTFSLTLQAERAGAA-R 744
Query: 769 DYVFGDLVWADDKQHQVRSPIVVNPA 794
DYVFG+L+W+D K H VRSPIVV A
Sbjct: 745 DYVFGELIWSDAK-HFVRSPIVVKAA 769
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227053577|gb|ACP18876.1| subtilisin-like serine protease [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/746 (72%), Positives = 632/746 (84%), Gaps = 2/746 (0%)
Query: 50 QTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAA 109
++ + GAHSHG ELS+ DL RV ESHY+FLGSFL + +++IFYSYT+HINGFAA
Sbjct: 27 KSSYVVYLGAHSHGLELSSADLDRVKESHYDFLGSFLGSPEEAQESIFYSYTKHINGFAA 86
Query: 110 KLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTI 169
+L+D VAA++AKHPKVVSVFLN+GRKLHTT SW+FLGLE+NG V S+SIWKKAR+GEDTI
Sbjct: 87 ELNDEVAAKLAKHPKVVSVFLNKGRKLHTTRSWDFLGLEQNGVVPSSSIWKKARFGEDTI 146
Query: 170 IGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVG 229
IGNLDTGVWPESKSFSDEGLGPIPSKW+GIC++ KD+ F CNRKLIGAR+FN+GYA+AVG
Sbjct: 147 IGNLDTGVWPESKSFSDEGLGPIPSKWRGICDHGKDSSFHCNRKLIGARFFNRGYASAVG 206
Query: 230 PLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPV 289
LNSSF++PRD +GHGTHTLSTAGGN VA ASVFGLGKGTAKGGSP+ARVAAYKVCWPPV
Sbjct: 207 SLNSSFESPRDNEGHGTHTLSTAGGNMVANASVFGLGKGTAKGGSPRARVAAYKVCWPPV 266
Query: 290 TGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAG 349
GNEC+DADILAAFD AIHD VDVLSVSLGG FFNDS AIGSFHAVKHG+VV+CSAG
Sbjct: 267 LGNECFDADILAAFDAAIHDRVDVLSVSLGGTAGGFFNDSVAIGSFHAVKHGIVVVCSAG 326
Query: 350 NSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLIS 409
NSGP D +VSN+APWQITVGASTMDR+FPSYV++ NN +KG+SLS LP FPLIS
Sbjct: 327 NSGPDDGSVSNVAPWQITVGASTMDREFPSYVLLGNNMSFKGESLSDAVLPGTNFFPLIS 386
Query: 410 AADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLAN 469
A +AKA NAS E A+LCEAG LDPKKVKGKILVCLRG NAR+DKGQQA LAGAVGM+LAN
Sbjct: 387 ALNAKATNASNEEAILCEAGALDPKKVKGKILVCLRGLNARVDKGQQAALAGAVGMILAN 446
Query: 470 AQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAF 529
++ NGNE++AD H+LPASHI+FTDG +F +N T PV Y+TR T+L KPAP+MAAF
Sbjct: 447 SELNGNEIIADAHVLPASHISFTDGLSVFEYINLTNSPVAYMTRPKTKLPTKPAPVMAAF 506
Query: 530 SSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVS 589
SSKGP+ V PEILKPDITAPGV +IAAYT A GPTN+++DRRR+ FN++SGTSMSCPHVS
Sbjct: 507 SSKGPNIVTPEILKPDITAPGVNVIAAYTRAQGPTNQNFDRRRVQFNSVSGTSMSCPHVS 566
Query: 590 GIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAM 649
GIVGLLKTL+P WSPAAI+SAIMT+A+ DN ILNAS+ KATPFSYGAGH+QPN AM
Sbjct: 567 GIVGLLKTLYPSWSPAAIRSAIMTSATTMDNINESILNASNVKATPFSYGAGHVQPNQAM 626
Query: 650 DPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEY-VSTANFNYPSITVPKLSGS 708
+PGLVYDL DYL FLCALGY+KT I++FS+ + CP +S A+FNYPSITVP+L G
Sbjct: 627 NPGLVYDLNTKDYLKFLCALGYSKTLISIFSNDKFNCPRTNISLADFNYPSITVPELKGL 686
Query: 709 IIVSRTVRNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATK 768
I +SR V+NVGSP TY V+ PKGISV+V+P+ LKF + GEEK+F VT+K+ K + TK
Sbjct: 687 ITLSRKVKNVGSPTTYRVTVQKPKGISVTVKPKILKFKKAGEEKSFTVTLKM-KAKNPTK 745
Query: 769 DYVFGDLVWADDKQHQVRSPIVVNPA 794
+YVFG+LVW+D+ +H VRSPIVV A
Sbjct: 746 EYVFGELVWSDEDEHYVRSPIVVKAA 771
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510927|ref|XP_003524185.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/743 (70%), Positives = 619/743 (83%), Gaps = 3/743 (0%)
Query: 49 LQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFA 108
L+ + GAHSH PELS+VD ++VT+SH+EFLGSFL ++ +D+IFYSYTRHINGFA
Sbjct: 27 LKKSYVVYLGAHSHKPELSSVDFNQVTQSHHEFLGSFLGSSNTTKDSIFYSYTRHINGFA 86
Query: 109 AKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDT 168
A L++ VAAEI+KHPKV+SVF N+GRKLHTT SW+F+GLE NG ++SNSIWKKAR+GE
Sbjct: 87 AILEEEVAAEISKHPKVLSVFENRGRKLHTTRSWDFMGLEHNGVIQSNSIWKKARFGEGV 146
Query: 169 IIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAV 228
IIGNLDTGVWPESKSFS+EGLGPIPSKW+GIC N D F CNRKLIGARYFNKGYA+
Sbjct: 147 IIGNLDTGVWPESKSFSEEGLGPIPSKWRGICHNGIDHTFHCNRKLIGARYFNKGYASVA 206
Query: 229 GPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPP 288
GPLNSSFD+PRD +GHGTHTLSTAGGN VA+ SVFG G GTAKGGSP ARVAAYKVCWPP
Sbjct: 207 GPLNSSFDSPRDNEGHGTHTLSTAGGNMVARVSVFGQGHGTAKGGSPMARVAAYKVCWPP 266
Query: 289 VTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSA 348
V G+EC+DADILAAFD+AIHDGVDVLS+SLGG S FF DS AIGSFHA KHG+VV+CSA
Sbjct: 267 VAGDECFDADILAAFDLAIHDGVDVLSLSLGGSASTFFKDSVAIGSFHAAKHGIVVVCSA 326
Query: 349 GNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLI 408
GNSGP D+T N+APW +TV ASTMDR FP+YV + NN +KG+SLS+ L + K +P+I
Sbjct: 327 GNSGPADATAENLAPWHVTVAASTMDRQFPTYVFLGNNITFKGESLSATIL-APKFYPII 385
Query: 409 SAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLA 468
A DAK A+A E A+LC+ GTLDP KVKGKI+VCLRG NAR+DKG+QA LAGAVGMVLA
Sbjct: 386 KATDAKLASARAEDAVLCQNGTLDPNKVKGKIVVCLRGINARVDKGEQAFLAGAVGMVLA 445
Query: 469 NAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAA 528
N + GNE++ADPH+LPASHINFTDG+ +F +NSTK PV Y+T T+L KPAP MAA
Sbjct: 446 NDKTTGNEIIADPHVLPASHINFTDGSAVFTYINSTKFPVAYITHPKTQLDTKPAPFMAA 505
Query: 529 FSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHV 588
FSSKGP+++ PEILKPDITAPGV++IAAYTEA GPTN+ +D+RRIPFN++SGTSMSCPHV
Sbjct: 506 FSSKGPNTIVPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRRIPFNSVSGTSMSCPHV 565
Query: 589 SGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLA 648
SGIVGLL+ L+P WSPAAIKSAIMTTA+ DN +LNA+ KATPFSYGAGH+QPN A
Sbjct: 566 SGIVGLLRALYPTWSPAAIKSAIMTTATTLDNEVEPLLNATDGKATPFSYGAGHVQPNRA 625
Query: 649 MDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLSGS 708
MDPGLVYD T +DYLNFLCALGYN TQI++F++ Y+C + S N NYPSITVPKLSGS
Sbjct: 626 MDPGLVYDTTIDDYLNFLCALGYNATQISVFTEGPYQCRKKFSLLNLNYPSITVPKLSGS 685
Query: 709 IIVSRTVRNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATK 768
+ V+R ++NVGSPGTYIA V+NP GI++SV+P LKF VGEEK+FKVT K + + AT
Sbjct: 686 VTVTRRLKNVGSPGTYIAHVQNPHGITISVKPSILKFKNVGEEKSFKVTFKAMQGK-ATN 744
Query: 769 DYVFGDLVWADDKQHQVRSPIVV 791
+YVFG L+W+D K H V SPIVV
Sbjct: 745 NYVFGKLIWSDGK-HYVTSPIVV 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453760|ref|XP_004144624.1| PREDICTED: subtilisin-like protease-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/759 (69%), Positives = 625/759 (82%), Gaps = 9/759 (1%)
Query: 38 FPLILSFLF---SMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLH-GNDNPE 93
F L+ S LF S ++ + GAHSHG + A D+ V SH+EFL FL G + +
Sbjct: 1 FLLLSSSLFTPTSAIKRSYVVYMGAHSHGGQKPA-DV--VANSHHEFLQPFLKSGEEFTK 57
Query: 94 DAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLE-RNGR 152
D IFYSYTRHINGFAA L+D VA ++AKHPKVVSVFLN+GRKLHTT SWEF+GLE +NG
Sbjct: 58 DVIFYSYTRHINGFAAMLEDEVAVQLAKHPKVVSVFLNRGRKLHTTRSWEFMGLENKNGV 117
Query: 153 VESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNR 212
+ S SIWKKAR+GEDTIIGNL+ GVW ESKSFSD+ GPIP +WKGIC+N KD F CNR
Sbjct: 118 INSESIWKKARFGEDTIIGNLEIGVWAESKSFSDDEYGPIPHRWKGICQNQKDPSFHCNR 177
Query: 213 KLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKG 272
KLIGARYFNKGYA+ VGPLNSSF +PRDK+GHG+HTLSTAGGNFVA ASVFGLGKGTAKG
Sbjct: 178 KLIGARYFNKGYASVVGPLNSSFHSPRDKEGHGSHTLSTAGGNFVAGASVFGLGKGTAKG 237
Query: 273 GSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAI 332
GSP+ARVAAYKVCWPP GNEC+DADILAAFD AIHDGVDVLSVSLGG P+ FNDS AI
Sbjct: 238 GSPRARVAAYKVCWPPKAGNECFDADILAAFDFAIHDGVDVLSVSLGGDPNPLFNDSVAI 297
Query: 333 GSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQ 392
GSFHA+KHG+VVICSAGNSGP TV+N+APWQITVGASTMDR FPS VV+ N K+ +G+
Sbjct: 298 GSFHAIKHGIVVICSAGNSGPAAGTVTNVAPWQITVGASTMDRKFPSLVVLGNRKQIEGE 357
Query: 393 SLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARID 452
SLS LPS KL+PL++AAD + ANAS A LC+AGTL+P K KGKILVCLRGDNAR+D
Sbjct: 358 SLSQDALPSKKLYPLMNAADVRLANASVHEAQLCKAGTLNPMKAKGKILVCLRGDNARVD 417
Query: 453 KGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLT 512
KG+QALLAGA GM+LAN + +GNE+LADPH+LPASHINFTDG+ +F +NSTK P Y+T
Sbjct: 418 KGEQALLAGAAGMILANNELSGNEILADPHVLPASHINFTDGSAVFAYINSTKYPEAYIT 477
Query: 513 RATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRR 572
ATT+LG++PAP MAAFSS GP++V PEILKPDITAPG+++IAAYTEA GPTN+++D RR
Sbjct: 478 PATTQLGIRPAPFMAAFSSVGPNTVTPEILKPDITAPGLSVIAAYTEAEGPTNQEFDNRR 537
Query: 573 IPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYK 632
IPFN++SGTSMSCPHVSGI GLLKTL+P WSPAAIKSAIMTTASI DNN +LNAS
Sbjct: 538 IPFNSVSGTSMSCPHVSGIAGLLKTLYPHWSPAAIKSAIMTTASILDNNFEPLLNASYSV 597
Query: 633 ATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYVST 692
A+PF+YGAGH+ PN A DPGLVYD+ N+YL+FLCALGYNK QI+ FS+ + C + +S
Sbjct: 598 ASPFNYGAGHVHPNGAADPGLVYDIEVNEYLSFLCALGYNKAQISQFSNGPFNCSDPISP 657
Query: 693 ANFNYPSITVPKLSGSIIVSRTVRNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEK 752
N NYPSITVPKLS SI ++R ++NVGSPGTY A +R P GISV V+P+ L F R+GEE
Sbjct: 658 TNLNYPSITVPKLSRSITITRRLKNVGSPGTYKAEIRKPAGISVWVKPKKLSFTRLGEEL 717
Query: 753 NFKVTIKVRKVRAATKDYVFGDLVWADDKQHQVRSPIVV 791
+FKV +KV++ + A K+YV+GDL+W+D K H VRSPIVV
Sbjct: 718 SFKVLMKVKERKVAKKNYVYGDLIWSDGK-HHVRSPIVV 755
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567212|ref|XP_002524587.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223536140|gb|EEF37795.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1081 bits (2796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/736 (73%), Positives = 620/736 (84%), Gaps = 4/736 (0%)
Query: 58 GAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAA 117
GAHSHG +LS+ D VTESHY FLGSFL D ED+IFYSYTRHINGFAA ++D VAA
Sbjct: 35 GAHSHGAQLSSADQKLVTESHYSFLGSFLGSRDIAEDSIFYSYTRHINGFAANIEDEVAA 94
Query: 118 EIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGV 177
EIAKHPKVVSVFLN+G+KLHTTHSW FLGLE++G V SNS+WKKARYG+D IIGNLDTGV
Sbjct: 95 EIAKHPKVVSVFLNRGKKLHTTHSWSFLGLEQDGVVPSNSLWKKARYGQDIIIGNLDTGV 154
Query: 178 WPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237
WPESKSFSD G GPIPSKW+GIC+N D CNRKLIGARYFNKGYA+ VG LNS+FD+
Sbjct: 155 WPESKSFSDGGYGPIPSKWRGICQNGSDPYLHCNRKLIGARYFNKGYASVVGHLNSTFDS 214
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
PRD++GHGTHTLSTAGGNFVA ASVFGLGKG AKGGSPKARVAAYKVC+PPV GNEC+DA
Sbjct: 215 PRDREGHGTHTLSTAGGNFVAGASVFGLGKGKAKGGSPKARVAAYKVCYPPVGGNECFDA 274
Query: 298 DILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST 357
DILAAFD AI DGVDVLSVSLGG ++ FNDS AIGSFHAVKHG+VVICSAGNSGP D T
Sbjct: 275 DILAAFDTAISDGVDVLSVSLGGEAAQLFNDSVAIGSFHAVKHGIVVICSAGNSGPADGT 334
Query: 358 VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAAN 417
SN+APWQITVGAST+DR+FPSYVV+ NN YKG+SLS K LP NK +PL+SAADA+AAN
Sbjct: 335 ASNLAPWQITVGASTIDREFPSYVVLGNNISYKGESLSKKALPKNKFYPLMSAADARAAN 394
Query: 418 ASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477
AS E A LC+AG+LD KK KGKILVCLRG NAR+DKGQQA AGAVGMVL N +++GNE+
Sbjct: 395 ASVEDAKLCKAGSLDRKKAKGKILVCLRGVNARVDKGQQAARAGAVGMVLVNDKDSGNEI 454
Query: 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV 537
LAD H+LPASH+N+T+G + +NSTK P+ ++TR T +G KPAP MAAFSS+GP+++
Sbjct: 455 LADVHILPASHLNYTNGVAILNYINSTKYPIAHVTRPETHIGTKPAPFMAAFSSRGPNTI 514
Query: 538 APEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT 597
PEILKPDITAPGV+IIAAYT+AAGPTNED+D RR+ FN++SGTSMSCPHVSGIVGLLK
Sbjct: 515 TPEILKPDITAPGVSIIAAYTQAAGPTNEDFDTRRVLFNSVSGTSMSCPHVSGIVGLLKI 574
Query: 598 LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDL 657
LHP WSPAAIKSAIMTTA +DNN+ ILNA+ KA PFSYGAGHI+PN AM+PGLVYDL
Sbjct: 575 LHPTWSPAAIKSAIMTTAMTRDNNREPILNATYSKANPFSYGAGHIRPNQAMEPGLVYDL 634
Query: 658 TENDYLNFLCALGYNKTQIALFSDKTYRCP-EYVSTANFNYPSITVPKLSGSIIVSRTVR 716
T NDYLNFLCALGYN+TQI FS Y+CP + V+ ANFNYPSITVPK GSI V+R V+
Sbjct: 635 TANDYLNFLCALGYNETQILSFSQAPYKCPNKLVNLANFNYPSITVPKFKGSITVTRRVK 694
Query: 717 NVGSP-GTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDL 775
NVGSP TY +R P GISVSVEP L F +GEEK FKVT+K +K + A K+YVFG+L
Sbjct: 695 NVGSPSSTYKVSIRKPTGISVSVEPEILNFREIGEEKTFKVTLKGKKFK-ARKEYVFGEL 753
Query: 776 VWADDKQHQVRSPIVV 791
W+D H+VRSPIVV
Sbjct: 754 TWSDS-IHRVRSPIVV 768
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462409|ref|XP_003601486.1| Subtilisin-like protease [Medicago truncatula] gi|355490534|gb|AES71737.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/737 (69%), Positives = 618/737 (83%), Gaps = 6/737 (0%)
Query: 58 GAHSH-GPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVA 116
G+HSH ELS+VD +RVT+SHYEFLGSFL + +++IFYSYTRHINGFAA L++ VA
Sbjct: 36 GSHSHDSEELSSVDFNRVTDSHYEFLGSFLGSSKTAKESIFYSYTRHINGFAATLEEEVA 95
Query: 117 AEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERN-GRVESNSIWKKARYGEDTIIGNLDT 175
AEIAKHPKV+SVF N GRKLHTTHSW F+GLE + G + S+SIW KAR+G+ II NLDT
Sbjct: 96 AEIAKHPKVLSVFENNGRKLHTTHSWGFMGLEDSYGVIPSSSIWNKARFGDGIIIANLDT 155
Query: 176 GVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVG-PLNSS 234
GVWPESKSFSDEG GPIPSKW+GIC+ +D F CNRKLIGARYFNKGYA+ + PLNSS
Sbjct: 156 GVWPESKSFSDEGFGPIPSKWRGICDKGRDPSFHCNRKLIGARYFNKGYASRLTVPLNSS 215
Query: 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNEC 294
F+TPRD +GHG+HTLSTAGGN V SVFG G GTAKGGSPKARVA+YKVCWPP+ G+EC
Sbjct: 216 FETPRDNEGHGSHTLSTAGGNMVPGVSVFGQGYGTAKGGSPKARVASYKVCWPPINGDEC 275
Query: 295 YDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPT 354
+DADILAAFD AIHDGVDVLSVSLGG S FNDS AIGSFHA K G+VV+CSAGNSGP
Sbjct: 276 FDADILAAFDAAIHDGVDVLSVSLGGSASNLFNDSVAIGSFHAAKKGIVVVCSAGNSGPN 335
Query: 355 DSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAK 414
D+T SN+APW ITVGASTMDR+FPSYVV+ NN +KG+SLS+ L ++K +P+I A DAK
Sbjct: 336 DATASNLAPWYITVGASTMDREFPSYVVLGNNLTFKGESLSAARL-ADKFYPIIKATDAK 394
Query: 415 AANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG 474
A+A+ E A+LC+ GTLDPKKVKGKI++CLRG NAR+DKG+QALLAGAVGMVLAN + G
Sbjct: 395 LASATNEDAVLCQNGTLDPKKVKGKIVLCLRGINARVDKGEQALLAGAVGMVLANDKTTG 454
Query: 475 NELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGP 534
NE++ADPH+LPASHINF+DG ++F VNS+K PV Y+T TT+L KPAP MAAFSSKGP
Sbjct: 455 NEIIADPHVLPASHINFSDGVEVFHYVNSSKSPVAYITHPTTKLHTKPAPFMAAFSSKGP 514
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
+++ PEILKPDITAPGV++IAAYTEA GPTN+++D RRI FN++SGTSMSCPH+SGIVGL
Sbjct: 515 NTIIPEILKPDITAPGVSVIAAYTEAEGPTNQEFDNRRIQFNSVSGTSMSCPHISGIVGL 574
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLV 654
L++L+P W+PAAIKSAIMTTA+ DN I+NA+ +ATPFSYGAGH+QPN AMDPGLV
Sbjct: 575 LRSLYPSWTPAAIKSAIMTTATTLDNKAEPIMNATKSQATPFSYGAGHVQPNSAMDPGLV 634
Query: 655 YDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLSGSIIVSRT 714
YD+T NDY NFLCALGYN+TQ++LFS Y+C + S N NYPSITVP LSGS+ V+RT
Sbjct: 635 YDITTNDYFNFLCALGYNETQMSLFSKGPYKCHKNFSILNLNYPSITVPNLSGSVTVTRT 694
Query: 715 VRNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGD 774
++NVG+PGTYI V++P GI++SV+P L+F +VGEEK F+V +KV+K + ATK YVFG
Sbjct: 695 LKNVGAPGTYIVHVQSPSGITISVKPNILEFKKVGEEKRFEVKLKVKKGK-ATKSYVFGK 753
Query: 775 LVWADDKQHQVRSPIVV 791
++W+D K H V+SP+VV
Sbjct: 754 MIWSDGK-HYVKSPLVV 769
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525207|ref|XP_003531218.1| PREDICTED: subtilisin-like protease-like [Glycine max] gi|33621210|gb|AAQ23176.1| subtilisin-like protease [Glycine max] gi|409032216|gb|AFV08660.1| subtilisin-like protease [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/734 (70%), Positives = 617/734 (84%), Gaps = 3/734 (0%)
Query: 58 GAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAA 117
GAHSHGPELS+VD ++VT+SH++FLGSFL ++ +D+IFYSYTRHINGFAA LD+ VA
Sbjct: 36 GAHSHGPELSSVDFNQVTQSHHDFLGSFLGSSNTAKDSIFYSYTRHINGFAATLDEEVAV 95
Query: 118 EIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGV 177
EIAKHPKV+SVF N+GRKLHTT SW+F+ LE NG ++S+SIWKKAR+GE IIGNLDTGV
Sbjct: 96 EIAKHPKVLSVFENRGRKLHTTRSWDFMELEHNGVIQSSSIWKKARFGEGVIIGNLDTGV 155
Query: 178 WPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237
WPESKSFS++GLGPIPSKW+GIC+N D F CNRKLIGARYFNKGYA+ GPLNSSFD+
Sbjct: 156 WPESKSFSEQGLGPIPSKWRGICDNGIDHTFHCNRKLIGARYFNKGYASVAGPLNSSFDS 215
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
PRD +GHGTHTLSTAGGN VA+ SVFG G+GTAKGGSP ARVAAYKVCWPPV G EC+DA
Sbjct: 216 PRDNEGHGTHTLSTAGGNMVARVSVFGQGQGTAKGGSPMARVAAYKVCWPPVGGEECFDA 275
Query: 298 DILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST 357
DILAAFD+AIHDGVDVLSVSLGG S FF DS AIGSFHA K G+VV+CSAGNSGP ++T
Sbjct: 276 DILAAFDLAIHDGVDVLSVSLGGSSSTFFKDSVAIGSFHAAKRGVVVVCSAGNSGPAEAT 335
Query: 358 VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAAN 417
N+APW +TV ASTMDR FP+YVV+ N+ +KG+SLS+ L ++K +P+I A DAK A+
Sbjct: 336 AENLAPWHVTVAASTMDRQFPTYVVLGNDITFKGESLSATKL-AHKFYPIIKATDAKLAS 394
Query: 418 ASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477
A E A+LC+ GTLDP K KGKI+VCLRG NAR+DKG+QA LAGAVGMVLAN + GNE+
Sbjct: 395 ARAEDAVLCQNGTLDPNKAKGKIVVCLRGINARVDKGEQAFLAGAVGMVLANDKTTGNEI 454
Query: 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV 537
+ADPH+LPASHINFTDG+ +F +NSTK PV Y+T T+L KPAP MAAFSSKGP+++
Sbjct: 455 IADPHVLPASHINFTDGSAVFNYINSTKFPVAYITHPKTQLDTKPAPFMAAFSSKGPNTM 514
Query: 538 APEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT 597
PEILKPDITAPGV++IAAYTEA GPTN+ +D+RRIPFN++SGTSMSCPHVSGIVGLL+
Sbjct: 515 VPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRRIPFNSVSGTSMSCPHVSGIVGLLRA 574
Query: 598 LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDL 657
L+P WS AAIKSAIMTTA+ DN +LNA+ KATPFSYGAGH+QPN AMDPGLVYD+
Sbjct: 575 LYPTWSTAAIKSAIMTTATTLDNEVEPLLNATDGKATPFSYGAGHVQPNRAMDPGLVYDI 634
Query: 658 TENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLSGSIIVSRTVRN 717
T +DYLNFLCALGYN+TQI++F++ Y+C + S N NYPSITVPKLSGS+ V+RT++N
Sbjct: 635 TIDDYLNFLCALGYNETQISVFTEGPYKCRKKFSLLNLNYPSITVPKLSGSVTVTRTLKN 694
Query: 718 VGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVW 777
VGSPGTYIA V+NP GI+VSV+P LKF VGEEK+FK+T K + + AT +Y FG L+W
Sbjct: 695 VGSPGTYIAHVQNPYGITVSVKPSILKFKNVGEEKSFKLTFKAMQGK-ATNNYAFGKLIW 753
Query: 778 ADDKQHQVRSPIVV 791
+D K H V SPIVV
Sbjct: 754 SDGK-HYVTSPIVV 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|409032218|gb|AFV08661.1| subtilisin-like protease [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/734 (70%), Positives = 615/734 (83%), Gaps = 3/734 (0%)
Query: 58 GAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAA 117
GAHSHGPELS+VD ++VT+SH++FLGSFL ++ +D+IFYSYTRHINGFAA LD+ VA
Sbjct: 36 GAHSHGPELSSVDFNQVTQSHHDFLGSFLGSSNTAKDSIFYSYTRHINGFAATLDEEVAV 95
Query: 118 EIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGV 177
EIAKHPKV+S F N+GRKLHTT SW+F+ LE NG ++S+SIWKKAR+GE IIGNLDTGV
Sbjct: 96 EIAKHPKVLSAFENRGRKLHTTRSWDFMELEHNGVIQSSSIWKKARFGEGVIIGNLDTGV 155
Query: 178 WPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237
WPESKSFS++GLGPIPSKW+GIC+N D F CNRKLIGARYFNKGYA+ GPLNSSFD+
Sbjct: 156 WPESKSFSEQGLGPIPSKWRGICDNGIDHTFHCNRKLIGARYFNKGYASVAGPLNSSFDS 215
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
PRD +GHGTHTLSTAGGN VA+ SVFG G+GTAKGGSP ARVAAYKVCWPPV G EC+DA
Sbjct: 216 PRDNEGHGTHTLSTAGGNMVARVSVFGQGQGTAKGGSPMARVAAYKVCWPPVGGEECFDA 275
Query: 298 DILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST 357
DILAAFD+AIHDGVDVLSVSLGG S FF DS AIGSFHA K G+VV+CSAGNSGP ++T
Sbjct: 276 DILAAFDLAIHDGVDVLSVSLGGSSSTFFKDSVAIGSFHAAKRGVVVVCSAGNSGPAEAT 335
Query: 358 VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAAN 417
N+APW +TV ASTMDR FP+YVV+ N+ +KG+SLS+ L ++K +P+I A DAK A+
Sbjct: 336 AENLAPWHVTVAASTMDRQFPTYVVLGNDITFKGESLSATKL-AHKFYPIIKATDAKLAS 394
Query: 418 ASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477
A E A+LC+ GTLDP K KGKI+VCLRG NAR+DKG+QA LAGAVGMVLAN + GNE+
Sbjct: 395 ARAEDAVLCQNGTLDPNKAKGKIVVCLRGINARVDKGEQAFLAGAVGMVLANDKTTGNEI 454
Query: 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV 537
+ADPH+LPASHINFTDG+ +F +NSTK PV Y+T T+L KPAP MAAFSSKGP+++
Sbjct: 455 IADPHVLPASHINFTDGSAVFNYINSTKFPVAYITHPKTQLDTKPAPFMAAFSSKGPNTM 514
Query: 538 APEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT 597
PEILKPDITAPGV++IAAYTEA GPTN+ +D+RRIPFN++SGTSMSCPHVSGIVGLL+
Sbjct: 515 VPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRRIPFNSVSGTSMSCPHVSGIVGLLRA 574
Query: 598 LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDL 657
L+P WS AAIKSAIMTTA+ DN +LNA+ KATPFSYGAGH+QPN AMDPGLVYD+
Sbjct: 575 LYPTWSTAAIKSAIMTTATTLDNEVEPLLNATDGKATPFSYGAGHVQPNRAMDPGLVYDI 634
Query: 658 TENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLSGSIIVSRTVRN 717
T +DYLNFLCALGYN+TQI++F++ Y+C + S N NYP ITVPKLSGS+ V+RT++N
Sbjct: 635 TIDDYLNFLCALGYNETQISVFTEGPYKCRKKFSLLNLNYPLITVPKLSGSVTVTRTLKN 694
Query: 718 VGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVW 777
VGSPGTYIA V+NP GI+VSV+P LKF VGEEK+FK+T K + + AT +Y FG L+W
Sbjct: 695 VGSPGTYIAHVQNPYGITVSVKPSILKFKNVGEEKSFKLTFKAMQGK-ATNNYAFGKLIW 753
Query: 778 ADDKQHQVRSPIVV 791
+D K H V SPIVV
Sbjct: 754 SDGK-HYVTSPIVV 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462068|ref|XP_002269877.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/734 (69%), Positives = 613/734 (83%), Gaps = 2/734 (0%)
Query: 58 GAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAA 117
GAHSHGPE ++VDL RVT SHY+FLGSFL N+ +DA+FYSY ++INGFAA L++ AA
Sbjct: 12 GAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFAAILEEEEAA 71
Query: 118 EIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGV 177
EIAKHP V+SVFLN+GRKLHTT SW FL LE+NG ++ NSIWKKAR+GEDTIIGNLDTGV
Sbjct: 72 EIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDTIIGNLDTGV 131
Query: 178 WPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237
WPESKSFSDEG+G +PSKW+G C+++ CNRKLIGARYFNKGYAA GPLNSSF++
Sbjct: 132 WPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYAGPLNSSFNS 191
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
RD +GHG+HTLSTAGG+ V ASVFG G GTAKGGSP ARVAAYKVCWP V C+DA
Sbjct: 192 ARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKVCWPQVNNGGCFDA 251
Query: 298 DILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST 357
DI+AAFD AIHDGVDVLSVSLGG S +F D AIGSFHAVK G+VV+ SAGN GP D++
Sbjct: 252 DIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGSFHAVKRGIVVVSSAGNDGPKDAS 311
Query: 358 VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAAN 417
VSN++PW ITVGAST+DR+F +YV + N K KG SLS+KGLPSNK +P+IS+ DAKAAN
Sbjct: 312 VSNVSPWMITVGASTIDREFTNYVALGNRKHLKGMSLSTKGLPSNKFYPVISSLDAKAAN 371
Query: 418 ASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477
AS + A+LC+ GTL+PKKVKGKILVCLRG+N R+DKG+QA LAGAVG +LAN ++GNEL
Sbjct: 372 ASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQAALAGAVGFILANDMQSGNEL 431
Query: 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV 537
+ADPH+LPASH+NF+DGA +F +NSTK P+ YLTR T+LG+KPAP MA+FSSKGP+++
Sbjct: 432 IADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQLGIKPAPFMASFSSKGPNTI 491
Query: 538 APEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT 597
PEILKPDITAPGV IIAAY+E+ GPT++ +D+RRIPFNA SGTSMSCPH+SGIVGLLKT
Sbjct: 492 TPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNAQSGTSMSCPHISGIVGLLKT 551
Query: 598 LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDL 657
LHP+WSPAAIKSAIMT+A +D+N +LN+S+ KATPFSYGAGH++PN AMDPGLVYD
Sbjct: 552 LHPDWSPAAIKSAIMTSARTRDDNMEPMLNSSNLKATPFSYGAGHVRPNRAMDPGLVYDS 611
Query: 658 TENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLSGSIIVSRTVRN 717
T NDYLNFLCA+GYN+TQ+ +FS K Y+CP+ S FNYPSIT P LSGS+ +SRTV+N
Sbjct: 612 TVNDYLNFLCAIGYNETQLQIFSQKPYKCPKSFSLTGFNYPSITAPNLSGSVTISRTVKN 671
Query: 718 VGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVW 777
VG+PGTY A V+ P GISV+V+P L+F GEEK+F++T+K + R A +DYVFG L+W
Sbjct: 672 VGTPGTYTASVKAPPGISVAVKPNKLEFREYGEEKSFRLTLKAKGRRVA-EDYVFGRLIW 730
Query: 778 ADDKQHQVRSPIVV 791
+D QH VRS IVV
Sbjct: 731 SDG-QHYVRSSIVV 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 794 | ||||||
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.921 | 0.948 | 0.637 | 4e-257 | |
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.914 | 0.933 | 0.592 | 7.9e-236 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.920 | 0.914 | 0.568 | 4.7e-222 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.915 | 0.954 | 0.482 | 4.9e-188 | |
| UNIPROTKB|Q0JK21 | 741 | Os01g0702300 "Os01g0702300 pro | 0.855 | 0.916 | 0.483 | 6.4e-170 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.885 | 0.928 | 0.448 | 2.6e-157 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.860 | 0.893 | 0.436 | 5.2e-152 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.852 | 0.886 | 0.440 | 1.6e-148 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.866 | 0.886 | 0.431 | 4.3e-148 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.885 | 0.907 | 0.416 | 1.9e-147 |
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2475 (876.3 bits), Expect = 4.0e-257, P = 4.0e-257
Identities = 469/736 (63%), Positives = 561/736 (76%)
Query: 58 GAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAA 117
GAHSH E++ + RV E+HY+FLGSF + DAIFYSYT+HINGFAA LD +A
Sbjct: 37 GAHSHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHINGFAAHLDHDLAY 96
Query: 118 EIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGV 177
EI+KHP+VVSVF N+ KLHTT SW+FLGLE N V S+SIW+KAR+GEDTII NLDTGV
Sbjct: 97 EISKHPEVVSVFPNKALKLHTTRSWDFLGLEHNSYVPSSSIWRKARFGEDTIIANLDTGV 156
Query: 178 WPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237
WPESKSF DEGLGPIPS+WKGIC+N KDA F CNRKLIGARYFNKGYAAAVG LNSSFD+
Sbjct: 157 WPESKSFRDEGLGPIPSRWKGICQNQKDATFHCNRKLIGARYFNKGYAAAVGHLNSSFDS 216
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
PRD DGHG+HTLSTA G+FV S+FG G GTAKGGSP+ARVAAYKVCWPPV GNECYDA
Sbjct: 217 PRDLDGHGSHTLSTAAGDFVPGVSIFGQGNGTAKGGSPRARVAAYKVCWPPVKGNECYDA 276
Query: 298 DILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST 357
D+LAAFD AIH P+ FFNDS AIGSFHA K +VV+CSAGNSGP DST
Sbjct: 277 DVLAAFDAAIHDGADVISVSLGGEPTSFFNDSVAIGSFHAAKKRIVVVCSAGNSGPADST 336
Query: 358 VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISXXXXXXXX 417
VSN+APWQITVGASTMDR+F S +V+ N K YKGQSLSS LP K +P+++
Sbjct: 337 VSNVAPWQITVGASTMDREFASNLVLGNGKHYKGQSLSSTALPHAKFYPIMASVNAKAKN 396
Query: 418 XSTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNEL 477
S A LC+ G+LDP K KGKILVCLRG N R++KG+ GN+L
Sbjct: 397 ASALDAQLCKLGSLDPIKTKGKILVCLRGQNGRVEKGRAVALGGGIGMVLENTYVTGNDL 456
Query: 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV 537
LADPH+LPA+ + D + R ++ TK+P+ ++T + T+LGLKPAP+MA+FSSKGPS V
Sbjct: 457 LADPHVLPATQLTSKDSFAVSRYISQTKKPIAHITPSRTDLGLKPAPVMASFSSKGPSIV 516
Query: 538 APEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT 597
AP+ILKPDITAPGV++IAAYT A PTNE +D RR+ FNA+SGTSMSCPH+SGI GLLKT
Sbjct: 517 APQILKPDITAPGVSVIAAYTGAVSPTNEQFDPRRLLFNAISGTSMSCPHISGIAGLLKT 576
Query: 598 LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDL 657
+P WSPAAI+SAIMTTA+I D+ G I NA++ KATPFS+GAGH+QPNLA++PGLVYDL
Sbjct: 577 RYPSWSPAAIRSAIMTTATIMDDIPGPIQNATNMKATPFSFGAGHVQPNLAVNPGLVYDL 636
Query: 658 TENDYLNFLCALGYNKTQIALFSDKTYRCPE-YVSTANFNYPSITVPKLSGS-IIVSRTV 715
DYLNFLC+LGYN +QI++FS + C +S N NYPSITVP L+ S + VSRTV
Sbjct: 637 GIKDYLNFLCSLGYNASQISVFSGNNFTCSSPKISLVNLNYPSITVPNLTSSKVTVSRTV 696
Query: 716 RNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDL 775
+NVG P Y +V NP+G+ V+V+P SL F +VGE+K FKV + K A K YVFG+L
Sbjct: 697 KNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGEQKTFKVILVKSKGNVA-KGYVFGEL 755
Query: 776 VWADDKQHQVRSPIVV 791
VW+D K+H+VRSPIVV
Sbjct: 756 VWSD-KKHRVRSPIVV 770
|
|
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2274 (805.5 bits), Expect = 7.9e-236, P = 7.9e-236
Identities = 436/736 (59%), Positives = 531/736 (72%)
Query: 58 GAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAA 117
G+H+H P++S+ L V SH FL SF+ ++N ++AIFYSY RHINGFAA LD+ AA
Sbjct: 47 GSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAKEAIFYSYKRHINGFAAILDENEAA 106
Query: 118 EIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGV 177
EIAKHP VVSVF N+GRKLHTTHSW F+ L +NG V +S+W KA YGEDTII NLDTGV
Sbjct: 107 EIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSSLWNKAGYGEDTIIANLDTGV 166
Query: 178 WPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVG-PLNSSFD 236
WPESKSFSDEG G +P++WKG C D CNRKLIGARYFNKGY A G P N+S++
Sbjct: 167 WPESKSFSDEGYGAVPARWKGRCHKDVP----CNRKLIGARYFNKGYLAYTGLPSNASYE 222
Query: 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYD 296
T RD DGHG+HTLSTA GNFV A+VFG+G GTA GGSPKARVAAYKVCWPPV G EC+D
Sbjct: 223 TCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSPKARVAAYKVCWPPVDGAECFD 282
Query: 297 ADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS 356
ADILAA + AI + +D AIGSFHAVK+G+ V+CSAGNSGP
Sbjct: 283 ADILAAIEAAIEDGVDVLSASVGGDAGDYMSDGIAIGSFHAVKNGVTVVCSAGNSGPKSG 342
Query: 357 TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISXXXXXXX 416
TVSN+APW ITVGAS+MDR+F ++V + N + +KG SLS K LP K++ LIS
Sbjct: 343 TVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTSLS-KPLPEEKMYSLISAADANVA 401
Query: 417 XXSTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNE 476
+ ALLC+ G+LDPKKVKGKILVCLRGDNAR+DKG Q + +GNE
Sbjct: 402 NGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVDKGMQAAAAGAAGMVLCNDKASGNE 461
Query: 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSS 536
+++D H+LPAS I++ DG LF ++STK P GY+ T L KPAP MA+FSS+GP++
Sbjct: 462 IISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIKAPTATLNTKPAPFMASFSSRGPNT 521
Query: 537 VAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLK 596
+ P ILKPDITAPGV IIAA+TEA GPT+ D D RR PFN SGTSMSCPH+SG+VGLLK
Sbjct: 522 ITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRTPFNTESGTSMSCPHISGVVGLLK 581
Query: 597 TLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYD 656
TLHP WSPAAI+SAIMTT+ ++N + +++ S KA PFSYG+GH+QPN A PGLVYD
Sbjct: 582 TLHPHWSPAAIRSAIMTTSRTRNNRRKPMVDESFKKANPFSYGSGHVQPNKAAHPGLVYD 641
Query: 657 LTENDYLNFLCALGYNKTQIALFS-DKTYRCPEYVSTANFNYPSITVPKLSGSIIVSRTV 715
LT DYL+FLCA+GYN T + LF+ D Y C + + +FNYPSITVP L+GSI V+R +
Sbjct: 642 LTTGDYLDFLCAVGYNNTVVQLFAEDPQYTCRQGANLLDFNYPSITVPNLTGSITVTRKL 701
Query: 716 RNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDL 775
+NVG P TY AR R P G+ VSVEP+ L F + GE K F++T+ R + YVFG+L
Sbjct: 702 KNVGPPATYNARFREPLGVRVSVEPKQLTFNKTGEVKIFQMTL--RPLPVTPSGYVFGEL 759
Query: 776 VWADDKQHQVRSPIVV 791
W D H VRSPIVV
Sbjct: 760 TWTDS-HHYVRSPIVV 774
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2144 (759.8 bits), Expect = 4.7e-222, P = 4.7e-222
Identities = 426/750 (56%), Positives = 521/750 (69%)
Query: 58 GAHSHGPELSA-----VDLHRVT----ESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFA 108
G H+HG L A VD+ + +SH E L L + +AIFYSYTRHINGFA
Sbjct: 45 GEHAHGERLGAAAAADVDVEALARQAEDSHCELLAGVLGDKEKAREAIFYSYTRHINGFA 104
Query: 109 AKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDT 168
A LD A AA+IA+ P VVSVF N+G KLHTT SW+FLGL G + + WKKAR+GEDT
Sbjct: 105 ANLDAAAAAKIAEKPGVVSVFPNRGHKLHTTRSWQFLGLAGVGGAPTGAAWKKARFGEDT 164
Query: 169 IIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAV 228
IIGNLDTGVWPES+SF D+GLGPIPS W+G C+ +D F CNRKLIGAR+FNKGYA+AV
Sbjct: 165 IIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQDDAFSCNRKLIGARFFNKGYASAV 224
Query: 229 GPLNSS-FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWP 287
G LN+S FDTPRD DGHGTHTLSTAGG VA ASVFG G GTA GGSP ARVAAY+VC+
Sbjct: 225 GNLNTSLFDTPRDTDGHGTHTLSTAGGAPVAGASVFGYGNGTASGGSPMARVAAYRVCYT 284
Query: 288 PVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVICS 347
PV G+EC+DADILAAFD AIH +F D AIGSFHAV+HG+ V+CS
Sbjct: 285 PVNGSECFDADILAAFDAAIHDGVHVLSVSLGGDAGDYFADGLAIGSFHAVRHGIAVVCS 344
Query: 348 AGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGL-PSNKLFP 406
AGNSGP TVSN+APW T ASTMDR+FP+YVV N+ + KGQSLS+ L P++ FP
Sbjct: 345 AGNSGPAPGTVSNVAPWLFTAAASTMDREFPAYVVF-NDTKLKGQSLSASALSPASSSFP 403
Query: 407 LISXXXXXXXXXSTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXX 466
+I + + LC G+LDP+KVKGKI+VCLRG N R++KG+
Sbjct: 404 MIDSSLAASPNRTQNESQLCFLGSLDPEKVKGKIVVCLRGVNPRVEKGEAVLEAGGAGMV 463
Query: 467 XXXXQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIM 526
GNE++AD H+LPA+HI F+DG LF + +TK P G +TR T LG KPAP M
Sbjct: 464 LANDVTTGNEIIADAHVLPATHIKFSDGQILFSYLKNTKSPAGTITRPETRLGTKPAPFM 523
Query: 527 AAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCP 586
AAFSS+GP++V P ILKPDITAPGV+++AA+T A+ PT+ +D+RR+ FN+ SGTSMSCP
Sbjct: 524 AAFSSQGPNTVTPGILKPDITAPGVSVVAAWTRASAPTDLAFDKRRVAFNSESGTSMSCP 583
Query: 587 HVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPN 646
HV+G+VGLL+TL P+WSPAAI+SA+MTTA DN + ILN+S A PF +GAGH+ P
Sbjct: 584 HVAGVVGLLRTLRPDWSPAAIRSALMTTAVEVDNERHAILNSSFAAANPFGFGAGHVSPA 643
Query: 647 LAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSD----KTYRCPEYV-STANFNYPSIT 701
AM+PGLVYDL DYLNFLC+L YN T +A+F+ +RCP + NYPSIT
Sbjct: 644 RAMNPGLVYDLAAVDYLNFLCSLSYNATVMAMFAGGGGAAPFRCPASPPKVQDLNYPSIT 703
Query: 702 VPKLSGSIIVSRTVRNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVR 761
V L+ S V RTV+NVG PG Y A V +P G+ V+V P +L FL GE+K F+V +V
Sbjct: 704 VVNLTSSATVRRTVKNVGKPGVYKAYVTSPAGVRVTVSPDTLPFLLKGEKKTFQVRFEVT 763
Query: 762 KVRAATKDYVFGDLVWADDKQHQVRSPIVV 791
A DY FG LVW + KQ VRSP+VV
Sbjct: 764 NASLAM-DYSFGALVWTNGKQF-VRSPLVV 791
|
|
| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1823 (646.8 bits), Expect = 4.9e-188, P = 4.9e-188
Identities = 359/744 (48%), Positives = 485/744 (65%)
Query: 58 GAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAA 117
G+H +GP+ SA + R T+SH++ LGS L +DAI YSYT++INGFAA L++ VA
Sbjct: 24 GSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHLEEEVAT 83
Query: 118 EIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGV 177
+IA+HP VV+V + KLHTT SW+F+ +ER+G++ +SIWK R+G+D II NLD+GV
Sbjct: 84 QIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQILPDSIWKHGRFGQDVIIANLDSGV 143
Query: 178 WPESKSFSDEGL-GPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAA-VGPLNSSF 235
WPES SF+DE + G +P +WKG C + CN+KLIGARYFNK + G ++ ++
Sbjct: 144 WPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKKLIGARYFNKDMLLSNPGAVDGNW 203
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
RD +GHGTHTLSTAGG FV +AS+FG GTAKGG+P+ARVAAYKVCW EC
Sbjct: 204 S--RDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKGGAPRARVAAYKVCW----SGECA 257
Query: 296 DADILAAFDMAIHXXXXXXXXXXXX-XP----SKFFNDSTAIGSFHAVKHGMVVICSAGN 350
AD+LA F+ AIH P + F + +GS HA +G+ V+CSAGN
Sbjct: 258 AADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEPVTLGSLHAAMNGVSVVCSAGN 317
Query: 351 SGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISX 410
SGP + TV N APW TV AST+DRDFP+ V + NN G SL + L S +L+ +I
Sbjct: 318 SGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHMTGMSLETTTLHSTQLYSMIKA 377
Query: 411 XXXXXXXXSTEVALLCEAGTLDPKKVKGKILVCLRG-DNARIDKGQQXXXXXXXXXXXXX 469
VA C GTLDP+KVK KI+VC+RG D R+ KG
Sbjct: 378 SDAALASSDPAVASTCPPGTLDPEKVKNKIVVCVRGGDIPRVTKGMTVLNAGGTGMILAN 437
Query: 470 XQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAF 529
+ +G++++ADPH+LPA+ I +++ L++ ++S+K PV ++ + TE+G+K +P +AAF
Sbjct: 438 GEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPVANISPSKTEVGVKNSPSVAAF 497
Query: 530 SSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVS 589
SS+GPS P +LKPDI APGV I+AA+TE PT D RR + LSGTSM+CPH+S
Sbjct: 498 SSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPNDERRSEYAILSGTSMACPHIS 557
Query: 590 GIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAM 649
G++GLLK PEWSPAA++SAIMTTA QDN + + +AT F++GAG+I PN A+
Sbjct: 558 GVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDHDGREATAFAFGAGNIHPNRAV 617
Query: 650 DPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTA-NFNYPSITVPKLSGS 708
DPGLVYDL++ DY FLC++G+N + +A S + CPE V + NYPSI VP L +
Sbjct: 618 DPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGNFTCPEKVPPMEDLNYPSIVVPALRHT 677
Query: 709 IIVSRTVRNVGSPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATK 768
V+R ++ VG P TY A R P G++++VEP +L+F + GE K FKVT K K + K
Sbjct: 678 STVARRLKCVGRPATYRATWRAPYGVNMTVEPAALEFGKDGEVKEFKVTFKSEKDKLG-K 736
Query: 769 DYVFGDLVWADDKQHQVRSPIVVN 792
YVFG LVW+D H VRSP+VVN
Sbjct: 737 GYVFGRLVWSDGTHH-VRSPVVVN 759
|
|
| UNIPROTKB|Q0JK21 Os01g0702300 "Os01g0702300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
Identities = 344/712 (48%), Positives = 457/712 (64%)
Query: 104 INGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKA- 162
I ++D++ I + P V++V + K+HTT SW+FL LERNG + WK A
Sbjct: 32 IQVIVVQIDESFVGVIKQLPGVLAVIPDVLHKVHTTRSWDFLELERNGA--ATGAWKDAA 89
Query: 163 RYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNK 222
+YG D IIGN+DTGVWPES SF D+G +PS+W+G C D F CN KLIGA +FN
Sbjct: 90 KYGVDAIIGNVDTGVWPESASFKDDGYS-VPSRWRGKCITGNDTTFKCNNKLIGAGFFNL 148
Query: 223 GYAAA---VG-PLNSSFD--TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPK 276
G+ A+ G P + + + TPRD GHGTHTLSTAGG FV ASVFG GKGTAKGGSP
Sbjct: 149 GFLASGLLQGKPPSQAAELYTPRDYIGHGTHTLSTAGGGFVPDASVFGHGKGTAKGGSPL 208
Query: 277 ARVAAYKVCWPPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSFH 336
ARVAAYK C+ G C +DILAA A+ + +D AIG+F+
Sbjct: 209 ARVAAYKACY--AEG--CSSSDILAAMVTAVEDGVNVLSLSVGGPADDYLSDPIAIGAFY 264
Query: 337 AVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVV---VSNNKRYKGQS 393
AV+ G++V+CSA NSGP +V+N+APW +TVGASTMDRDFP+YV V+++ KGQS
Sbjct: 265 AVQKGVIVVCSASNSGPQPGSVTNVAPWILTVGASTMDRDFPAYVTFGGVTSSMTIKGQS 324
Query: 394 LSSKGLPSNKLFPLISXXXXXXXXXSTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDK 453
LS+ LP + + +I+ +E + LC G+LD KV+GKI+VC RG NAR++K
Sbjct: 325 LSNSTLPQGQRYAMINAKNANAANVPSENSTLCFPGSLDSDKVRGKIVVCTRGVNARVEK 384
Query: 454 GQQXXXXXXXXXXXXXXQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTR 513
G NG +++ADPHL+ A+H++++ +LF + ST PVGY+T
Sbjct: 385 GLVVKQAGGVGMVLCNYAGNGEDVIADPHLIAAAHVSYSQCINLFNYLGSTDNPVGYITA 444
Query: 514 ATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRI 573
+ LG+KPAP+MAAFSS+GP+ + P+ILKPDITAPGV++IAAY+EA PT +D RR+
Sbjct: 445 SDARLGVKPAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSPTELSFDDRRV 504
Query: 574 PFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKA 633
P+N +SGTSMSCPHVSGIVGL+KT +P+W+PA IKSAIMTTA DN+ G+I + + A
Sbjct: 505 PYNIMSGTSMSCPHVSGIVGLIKTKYPDWTPAMIKSAIMTTAITGDNDSGKIRDETGAAA 564
Query: 634 TPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALG--YNKTQIALFSD--KTYRCPE- 688
TPF+YG+GH++ A+DPGLVYD T DY +FLCAL N + +F D K C +
Sbjct: 565 TPFAYGSGHVRSVQALDPGLVYDTTSADYADFLCALRPTQNPLPLPVFGDDGKPRACSQG 624
Query: 689 --YVSTANFNYPSITVPKLSGSIIVSRTVRNVGS-PGTYIARVRNP-KGISVSVEPRSLK 744
Y + NYPSI VP LSGS V R V+NVG+ P Y V G+ V+V P L
Sbjct: 625 AQYGRPEDLNYPSIAVPCLSGSATVRRRVKNVGAAPCRYAVSVTEALAGVKVTVYPPELS 684
Query: 745 FLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWAD------DKQHQVRSPIV 790
F GEE+ F V ++V+ AA +YVFG + W++ D++H+VRSPIV
Sbjct: 685 FESYGEEREFTVRLEVQDAAAAA-NYVFGSIEWSEESESDPDRKHRVRSPIV 735
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
Identities = 330/736 (44%), Positives = 448/736 (60%)
Query: 67 SAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVV 126
S+ DLH + Y+ S +D+ E + Y+Y I+GF+ +L A + P V+
Sbjct: 43 SSFDLH---SNWYD--SSLRSISDSAE--LLYTYENAIHGFSTRLTQEEADSLMTQPGVI 95
Query: 127 SVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSD 186
SV +LHTT + FLGL+ + + ++ +A D ++G LDTGVWPESKS+SD
Sbjct: 96 SVLPEHRYELHTTRTPLFLGLDEH----TADLFPEAGSYSDVVVGVLDTGVWPESKSYSD 151
Query: 187 EGLGPIPSKWKGICENDKD-AKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT--PRDKDG 243
EG GPIPS WKG CE + LCNRKLIGAR+F +GY + +GP++ S ++ PRD DG
Sbjct: 152 EGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDG 211
Query: 244 HGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303
HGTHT STA G+ V AS+ G GTA+G +P+ARVA YKVCW G C+ +DILAA
Sbjct: 212 HGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCW---LGG-CFSSDILAAI 267
Query: 304 DMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAP 363
D AI S ++ D AIG+F A++ G++V CSAGN+GP+ S++SN+AP
Sbjct: 268 DKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAP 327
Query: 364 WQITVGASTMDRDFPSYVVVSNNKRYKGQSL-SSKGLPSNKLFPLISXXXXXXXXXSTEV 422
W TVGA T+DRDFP+ ++ N K + G SL + LP +KL P I
Sbjct: 328 WITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALP-DKLLPFIYAGNASNATNGN-- 384
Query: 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNELLADPH 482
LC GTL P+KVKGKI++C RG NAR+ KG NG EL+AD H
Sbjct: 385 --LCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAH 442
Query: 483 LLPASHINFTDGADLFRD-VNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEI 541
LLPA+ + G D+ R V + P ++ T +G+KP+P++AAFSS+GP+S+ P I
Sbjct: 443 LLPATTVGEKAG-DIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNI 501
Query: 542 LKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE 601
LKPD+ APGV I+AA+T AAGPT D RR+ FN +SGTSMSCPHVSG+ LLK++HPE
Sbjct: 502 LKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPE 561
Query: 602 WSPAAIKSAIMTTASIQDNNKGQILNASSYK-ATPFSYGAGHIQPNLAMDPGLVYDLTEN 660
WSPAAI+SA+MTTA + +L+ ++ K +TPF +GAGH+ P A +PGL+YDLT
Sbjct: 562 WSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTE 621
Query: 661 DYLNFLCALGYNKTQIALFSDKTYRC-P-EYVSTANFNYPSITVPKLS-GSIIVSRTVRN 717
DYL FLCAL Y QI S + Y C P + S A+ NYPS V G+ +RTV +
Sbjct: 622 DYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTS 681
Query: 718 VGSPGTYIARVRNPK-GISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLV 776
VG GTY +V + G+ +SVEP L F E+K++ VT V + + + FG +
Sbjct: 682 VGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNS-FGSIE 740
Query: 777 WADDKQHQVRSPIVVN 792
W+D K H V SP+ ++
Sbjct: 741 WSDGK-HVVGSPVAIS 755
|
|
| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 314/720 (43%), Positives = 435/720 (60%)
Query: 93 EDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGR 152
E I + Y +GF+A + A + HP V++VF ++ R+LHTT S +FLGL+
Sbjct: 55 ESRIVHVYHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQFLGLQNQ-- 112
Query: 153 VESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFL--- 209
+W ++ YG D IIG DTG+WPE +SFSD LGPIP +W+G+CE+ A+F
Sbjct: 113 ---KGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESG--ARFSPRN 167
Query: 210 CNRKLIGARYFNKGYAAAV-GPLNSS--FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLG 266
CNRK+IGAR+F KG AAV G +N + F +PRD DGHGTHT STA G KAS+ G
Sbjct: 168 CNRKIIGARFFAKGQQAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYA 227
Query: 267 KGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXP---S 323
G AKG +PKAR+AAYKVCW +G C D+DILAAFD A+ S
Sbjct: 228 SGVAKGVAPKARIAAYKVCWKD-SG--CLDSDILAAFDAAVRDGVDVISISIGGGDGITS 284
Query: 324 KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVV 383
++ D AIGS+ A G+ V SAGN GP +V+N+APW TVGAST+DR+FP+ ++
Sbjct: 285 PYYLDPIAIGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPADAIL 344
Query: 384 SNNKRYKGQSLSSKGLPSN-KLFPLISXXXXXXXXXSTEVALLCEAGTLDPKKVKGKILV 442
+ R +G SL + G+P N ++FP++ S LC TLDPK+V+GKI++
Sbjct: 345 GDGHRLRGVSLYA-GVPLNGRMFPVVYPGKSGMSSAS-----LCMENTLDPKQVRGKIVI 398
Query: 443 CLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNELLADPHLLPASHINFTDGADLFRDVN 502
C RG + R+ KG NG L+ D HL+PA + +G + +
Sbjct: 399 CDRGSSPRVAKGLVVKKAGGVGMILANGASNGEGLVGDAHLIPACAVGSNEGDRIKAYAS 458
Query: 503 STKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAG 562
S P+ + T +G+KPAP++A+FS +GP+ ++PEILKPD+ APGV I+AA+T+A G
Sbjct: 459 SHPNPIASIDFRGTIVGIKPAPVIASFSGRGPNGLSPEILKPDLIAPGVNILAAWTDAVG 518
Query: 563 PTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNK 622
PT D R+ FN LSGTSM+CPHVSG LLK+ HP+WSPA I+SA+MTT ++ DN+
Sbjct: 519 PTGLPSDPRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTTNLVDNSN 578
Query: 623 GQILNASSYK-ATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSD 681
+++ S+ K ATP+ YG+GH+ AM+PGLVYD+T +DY+ FLC++GY I + +
Sbjct: 579 RSLIDESTGKSATPYDYGSGHLNLGRAMNPGLVYDITNDDYITFLCSIGYGPKTIQVITR 638
Query: 682 KTYRCP--EYVSTANFNYPSITV--PKLSGSII---VSRTVRNVG-SPGTYIARVRNPKG 733
RCP S N NYPSIT P ++ V RT NVG + Y AR+ +P+G
Sbjct: 639 TPVRCPTTRKPSPGNLNYPSITAVFPTNRRGLVSKTVIRTATNVGQAEAVYRARIESPRG 698
Query: 734 ISVSVEPRSLKFLRVGEEKNFKVTIKV--RKVRAATKDYVFGDLVWADDKQHQVRSPIVV 791
++V+V+P L F + +++ VT+ V R V VFG + W D +H VRSPIVV
Sbjct: 699 VTVTVKPPRLVFTSAVKRRSYAVTVTVNTRNVVLGETGAVFGSVTWFDGGKHVVRSPIVV 758
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
Identities = 313/711 (44%), Positives = 434/711 (61%)
Query: 96 IFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVES 155
+ Y+Y ++G++A+L A A + P V+ V +LHTT + EFLGL+R +
Sbjct: 70 VLYTYDTIVHGYSARLTRAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDR-----T 124
Query: 156 NSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICE--NDKDAKFLCNRK 213
++++ ++ G D I+G LDTGVWPE S+ D GLGP+P+ WKG CE ND +A CN+K
Sbjct: 125 DALFPQSNTGSDVIVGVLDTGVWPERPSYDDAGLGPVPAGWKGKCEEGNDFNAS-ACNKK 183
Query: 214 LIGARYFNKGYAAAVGPLNSSFDT--PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAK 271
LIGAR+F GY AA GP+++S ++ PRD DGHGTHT STA G+ V A + G GTAK
Sbjct: 184 LIGARFFLTGYEAAKGPVDTSKESRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAK 243
Query: 272 GGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTA 331
G +P ARVA YKVCW V G C+ +DIL A ++A++ + ++ DS A
Sbjct: 244 GMAPHARVATYKVCW--VGG--CFSSDILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIA 299
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391
+G++ A++ G+ V CSAGN+GP +T+SN APW TVGA T+DRDFP++VV+ N K Y G
Sbjct: 300 VGAYSAMERGIFVSCSAGNAGPGSATLSNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSG 359
Query: 392 QSL-SSKGLPSNKLFPLISXXXXXXXXXSTEVALLCEAGTLDPKKVKGKILVCLRGDNAR 450
SL S K LP+ + P I ++ + LC +G+L P+KV GKI++C RG NAR
Sbjct: 360 VSLYSGKQLPTTPV-PFI----YAGNASNSSMGALCMSGSLIPEKVAGKIVLCDRGTNAR 414
Query: 451 IDKGQQXXXXXXXXXXXXXXQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGY 510
+ KG NG EL+AD H+LP + + G + S P
Sbjct: 415 VQKGFVVKDAGGAGMVLANTAANGEELVADAHVLPGAGVGQKAGDTMRAYALSDPNPTAS 474
Query: 511 LTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDR 570
+ A T++G++P+P++AAFSS+GP++V P ILKPD+ APGV I+AA++ + GP+ D
Sbjct: 475 IVFAGTQVGIQPSPVVAAFSSRGPNTVTPGILKPDLIAPGVNILAAWSGSVGPSGLAGDS 534
Query: 571 RRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILN-AS 629
RR+ FN +SGTSMSCPHVSG+ LL+ H +WSPAAI+SA+MTT+ N IL+ A+
Sbjct: 535 RRVGFNIISGTSMSCPHVSGLAALLRAAHQDWSPAAIRSALMTTSYNGYPNGNGILDVAT 594
Query: 630 SYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIA-LFSDKTYRCP- 687
ATP GAGH+ P+ A+DPGLVYD+ DY++FLCA+ Y QIA L T C
Sbjct: 595 GLPATPLDVGAGHVDPSKAVDPGLVYDIAAADYVDFLCAISYGPMQIAALTKHTTDACSG 654
Query: 688 --EYVSTANFNYPS--ITVPKLSGSIIVSRTVRNVGSPGTYIARVRNPKG---ISVSVEP 740
Y TA NYPS +T P G+ +RTV NVG PGTY G ++VSVEP
Sbjct: 655 NRTYAVTA-LNYPSFSVTFPATGGTEKHTRTVTNVGQPGTYKVTASAAAGSTPVTVSVEP 713
Query: 741 RSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQVRSPIVV 791
+L F + GE++++ V+ + + T FG LVW+ D H V SPI V
Sbjct: 714 STLTFTKSGEKQSYTVSFAAAAMPSGTNG--FGRLVWSSD-HHVVSSPIAV 761
|
|
| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
Identities = 308/714 (43%), Positives = 431/714 (60%)
Query: 90 DNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLER 149
D+ I Y+Y +GFAA+LD+ A +A+ V++V +LHTT S +FLG+
Sbjct: 71 DDASTRIIYNYETAFHGFAAQLDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGI-- 128
Query: 150 NGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFL 209
G SN IW + D ++G LDTG+WPES SFSD+GLGP+P+KWKG+C+ +
Sbjct: 129 -GPEVSNRIWSDSLADHDVVVGVLDTGIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTA 187
Query: 210 -CNRKLIGARYFNKGYAAAVGPLNSSFD--TPRDKDGHGTHTLSTAGGNFVAKASVFGLG 266
CNRK++GAR F GY A+ GP+N + + +PRD+DGHGTHT +TA G+ V A+++G
Sbjct: 188 NCNRKIVGARIFYNGYEASSGPINETTELKSPRDQDGHGTHTAATAAGSPVQDANLYGYA 247
Query: 267 KGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFF 326
G A+G +P+ARVAAYKVCW G C+ +DILAA D A+ S+++
Sbjct: 248 GGVARGMAPRARVAAYKVCW---AGG-CFSSDILAAVDRAVSDGVDVLSISLGGGASRYY 303
Query: 327 NDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNN 386
DS +I SF A++ G+ V CSAGN+GP +++N++PW TVGASTMDRDFP+ V + N
Sbjct: 304 LDSLSIASFGAMQMGVFVACSAGNAGPDPISLTNLSPWITTVGASTMDRDFPATVTLGNG 363
Query: 387 KRYKGQSLSS--KGLPSNKLFPLISXXXXXXXXXSTEVALLCEAGTLDPKKVKGKILVCL 444
G SL + L + +P++ + LC GTL P V GKI++C
Sbjct: 364 ANITGVSLYKGLRNLSPQEQYPVV---YLGGNSSMPDPRSLCLEGTLQPHDVSGKIVICD 420
Query: 445 RGDNARIDKGQQXXXXXXXXXXXXXXQENGNELLADPHLLPASHINFTDGADLFRDVNST 504
RG + R+ KGQ NG EL+AD HLLPA + +G S
Sbjct: 421 RGISPRVQKGQVVKEAGGIGMILANTAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSA 480
Query: 505 KRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPT 564
+P L+ T+LG++P+P++AAFSS+GP+ + EILKPD+ APGV I+AA++ A P+
Sbjct: 481 PKPTATLSFGGTKLGIRPSPVVAAFSSRGPNILTLEILKPDVVAPGVNILAAWSGDASPS 540
Query: 565 NEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQ 624
+ D RR+ FN LSGTSMSCPHV+G+ L+K HP+WSPA IKSA+MTTA + DN
Sbjct: 541 SLSSDSRRVGFNILSGTSMSCPHVAGVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRP 600
Query: 625 ILNASSYKA-TPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFS-DK 682
+ +A++ KA TPF +GAGHI P A+ PGLVYD+ + DYL FLC Q+ F+ +
Sbjct: 601 MKDAATGKASTPFEHGAGHIHPVRALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNS 660
Query: 683 TYRCPEYVSTAN-FNYPSITV---PKLSGSIIVSRTVRNVGSPG-TYIARVRNPKGISVS 737
C S+A+ NYP+I+V + S ++ V RTV NVG P TY +V KG V
Sbjct: 661 NMTCRHTFSSASDLNYPAISVVFADQPSKALTVRRTVTNVGPPSSTYHVKVTKFKGADVI 720
Query: 738 VEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQVRSPIVV 791
VEP +L F+ ++ ++KVT+ + AA K FG L W+D H VRSP+V+
Sbjct: 721 VEPNTLHFVSTNQKLSYKVTVTTK---AAQKAPEFGALSWSDGV-HIVRSPVVL 770
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
Identities = 308/739 (41%), Positives = 433/739 (58%)
Query: 77 SHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKL 136
+H+ + S L + +I ++Y +GF+A+L A+++ HP V+SV Q R L
Sbjct: 43 THFHWYTSSLASLTSSPPSIIHTYDTVFHGFSARLTSQDASQLLDHPHVISVIPEQVRHL 102
Query: 137 HTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKW 196
HTT S EFLGL + + +++ +G D +IG +DTGVWPE SF D GLGP+P KW
Sbjct: 103 HTTRSPEFLGLRSTDKA---GLLEESDFGSDLVIGVIDTGVWPERPSFDDRGLGPVPIKW 159
Query: 197 KGICENDKD-AKFLCNRKLIGARYFNKGYAAAVGPLNSS--FDTPRDKDGHGTHTLSTAG 253
KG C +D + CNRKL+GAR+F GY A G +N + F +PRD DGHGTHT S +
Sbjct: 160 KGQCIASQDFPESACNRKLVGARFFCGGYEATNGKMNETTEFRSPRDSDGHGTHTASISA 219
Query: 254 GNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHXXXXX 313
G +V AS G G A G +PKAR+AAYKVCW + CYD+DILAAFD A+
Sbjct: 220 GRYVFPASTLGYAHGVAAGMAPKARLAAYKVCW----NSGCYDSDILAAFDTAVADGVDV 275
Query: 314 XXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTM 373
++ D+ AIG+F A+ G+ V SAGN GP TV+N+APW TVGA T+
Sbjct: 276 ISLSVGGVVVPYYLDAIAIGAFGAIDRGIFVSASAGNGGPGALTVTNVAPWMTTVGAGTI 335
Query: 374 DRDFPSYVVVSNNKRYKGQSL-SSKGLPSNKLFPLISXXXXXXXXXSTEVALLCEAGTLD 432
DRDFP+ V + N K G S+ GL +++PL+ + + LC G+LD
Sbjct: 336 DRDFPANVKLGNGKMISGVSVYGGPGLDPGRMYPLVYGGSLLGGDGYS--SSLCLEGSLD 393
Query: 433 PKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNELLADPHLLPASHINFT 492
P VKGKI++C RG N+R KG+ +G L+AD H+LPA+ + +
Sbjct: 394 PNLVKGKIVLCDRGINSRATKGEIVRKNGGLGMIIANGVFDGEGLVADCHVLPATSVGAS 453
Query: 493 DGADLFRDVN------STKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDI 546
G ++ R ++ S+K P + T LG++PAP++A+FS++GP+ PEILKPD+
Sbjct: 454 GGDEIRRYISESSKSRSSKHPTATIVFKGTRLGIRPAPVVASFSARGPNPETPEILKPDV 513
Query: 547 TAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAA 606
APG+ I+AA+ + GP+ D RR FN LSGTSM+CPHVSG+ LLK HP+WSPAA
Sbjct: 514 IAPGLNILAAWPDRIGPSGVTSDNRRTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAA 573
Query: 607 IKSAIMTTASIQDNNKGQILNASSYKATP-FSYGAGHIQPNLAMDPGLVYDLTENDYLNF 665
I+SA++TTA DN+ +++ S+ + YG+GH+ P AMDPGLVYD+T DY+NF
Sbjct: 574 IRSALITTAYTVDNSGEPMMDESTGNTSSVMDYGSGHVHPTKAMDPGLVYDITSYDYINF 633
Query: 666 LCALGYNKTQIALFSDKTYRCP---EYVSTANFNYPSITV-------PKLSGSIIVSRTV 715
LC Y +T I + + C N NYPS +V K+S I RTV
Sbjct: 634 LCNSNYTRTNIVTITRRQADCDGARRAGHVGNLNYPSFSVVFQQYGESKMSTHFI--RTV 691
Query: 716 RNVG-SPGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAA--TKDYVF 772
NVG S Y ++R P+G +V+VEP L F RVG++ +F V +K +V+ + +
Sbjct: 692 TNVGDSDSVYEIKIRPPRGTTVTVEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVET 751
Query: 773 GDLVWADDKQHQVRSPIVV 791
G +VW+D K++ V SP+VV
Sbjct: 752 GHIVWSDGKRN-VTSPLVV 769
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 794 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-113 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 6e-34 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 6e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-24 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 9e-22 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-16 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-16 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 9e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 4e-12 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 5e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-11 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-11 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-11 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 7e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 7e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 8e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-10 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-10 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 4e-10 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-09 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 5e-09 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 5e-09 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 8e-09 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-08 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-07 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 5e-07 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 5e-07 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 7e-07 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-06 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 2e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-05 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 4e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 6e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 9e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 9e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 0.002 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 0.003 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 0.003 | |
| cd04816 | 122 | cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- | 0.003 | |
| cd04818 | 118 | cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas | 0.003 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 0.004 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 347 bits (892), Expect = e-113
Identities = 128/241 (53%), Positives = 150/241 (62%), Gaps = 8/241 (3%)
Query: 135 KLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPS 194
+LHTT S +FLGL S+ A GE IIG LDTG+WPE SF+D G GP P
Sbjct: 2 QLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPH 58
Query: 195 KWKGICE-NDKDAKFLCNRKLIGARYFNKGYAAAVGP-LNSSFDTPRDKDGHGTHTLSTA 252
W G C + F CN KLIGARYF+ GY A G + + +PRD DGHGTHT STA
Sbjct: 59 TWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTA 118
Query: 253 GGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVD 312
GN V ASV G GTA G +P+AR+A YKVCWP C+ +DILAA D AI DGVD
Sbjct: 119 AGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWP---DGGCFGSDILAAIDQAIADGVD 175
Query: 313 VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGAST 372
V+S S+GGG + D AI HAV+ G+ V SAGNSGP STV N+APW TV AST
Sbjct: 176 VISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
Query: 373 M 373
+
Sbjct: 236 L 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 6e-34
Identities = 45/81 (55%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 536 SVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLL 595
+VA LKPDI APGV I+AA+T + D R F +SGTSM+ PHV+G+ LL
Sbjct: 230 TVAASTLKPDIAAPGVDILAAWT---PEGADPGDARGEDFAFISGTSMASPHVAGVAALL 286
Query: 596 KTLHPEWSPAAIKSAIMTTAS 616
K+ HP+WSPAAIKSA+MTTA
Sbjct: 287 KSAHPDWSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-33
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 8/133 (6%)
Query: 380 YVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGK 439
V + N K GQSL + K +PL+ K+AN+ A LC G+LDP KVKGK
Sbjct: 1 VVTLGNGKTIVGQSLYP---GNLKTYPLVY----KSANSGDVDASLCLPGSLDPSKVKGK 53
Query: 440 ILVCLRGDN-ARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLF 498
I++C RG N +R+ KG AG GM+LAN +G +++AD H+LPA H+++ DG +
Sbjct: 54 IVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAIL 113
Query: 499 RDVNSTKRPVGYL 511
+NST P +
Sbjct: 114 SYINSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 522 PAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGT 581
A + SS+GP + +KPDI APGV I++ + Y R +SGT
Sbjct: 188 EADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAPGSGT----GYAR-------MSGT 235
Query: 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641
SM+ PHV+G LLK HP+WSPA IK+A+M TA + ++ GAG
Sbjct: 236 SMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAK-------PLYDSDGVVYPVSRQGAG 288
Query: 642 HIQPNLA 648
+ A
Sbjct: 289 RVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 9e-22
Identities = 61/164 (37%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 221 NKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVA 280
P + D GHGTH GN G+ GT KG +PKA +
Sbjct: 41 YDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLY 92
Query: 281 AYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLG---GGPSKFFNDSTAIGSFHA 337
AYKV P G I+AA + A+ DG+DV+++SLG GP +D AI +A
Sbjct: 93 AYKVLGP---GGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGP----DDPDAIAINNA 145
Query: 338 VKHGMVVICSAGNSGPTDSTVSN--IAPWQITVGASTMDRDFPS 379
VK G+VV+ +AGNSGP T+ + AP ITVGAST+ +
Sbjct: 146 VKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADVAEA 189
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 521 KPAPIMAAFSSKGPSSVAPEILKPDITAPGVTII-AAYTEAAGPTNEDYDRRRIPFNALS 579
++ FSS+GP+ +KPD+ APG I+ +S
Sbjct: 175 PHDDGISYFSSRGPT--GDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFE-----MS 227
Query: 580 GTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTA 615
GTSM+ PHVSG + LL +P +P +K + TA
Sbjct: 228 GTSMATPHVSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-16
Identities = 57/218 (26%), Positives = 76/218 (34%), Gaps = 49/218 (22%)
Query: 168 TIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAA 227
+ +DTGV P+ G EN
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENG------------------------ 36
Query: 228 VGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWP 287
P D +GHGTH + G G +P A++ KV
Sbjct: 37 -------PTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVLDG 80
Query: 288 PVTGNECYDADILAAFDMAIHD-GVDVLSVSLGGGPSKFFND-STAIGSFHAVKHGMVVI 345
+G +DI AA D A D G DV+++SLGG S + S AI A K G++V+
Sbjct: 81 DGSG---SSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALA-KLGVLVV 136
Query: 346 CSAGNSGPTDSTVSNI---APWQITVGASTMDRDFPSY 380
+AGN GP T +P I VGA D S
Sbjct: 137 AAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASP 174
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 6e-16
Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 528 AFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPH 587
A P S E KPD+ APGV + +A A G + Y R LSGTSM+ PH
Sbjct: 175 ASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANG--DGQYTR-------LSGTSMAAPH 225
Query: 588 VSGIVGLLKTLHPEWSPAAIKSAIMTTA 615
V+G+ LL HP+ SP IK A+ TA
Sbjct: 226 VAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
TP D +GHGTH G+ A G KG +P A + KV +G+
Sbjct: 38 TTPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVGVKVLDD--SGS-GS 87
Query: 296 DADILAAFDMAI----HDGVDVLSVSLGGGPSK-FFNDSTAIGSFHAVKHGMVVICSAGN 350
++DI+A D + + V+++SLG P + D G+VV+ +AGN
Sbjct: 88 ESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGN 147
Query: 351 SGPTDSTVSN--IAPWQITVGASTMDRDFPSYVVVSN 385
SGP T+++ +P ITVGA +D + P +S
Sbjct: 148 SGPGPGTITSPGNSPKVITVGA--VDDNGPHDDGISY 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 43/204 (21%), Positives = 65/204 (31%), Gaps = 40/204 (19%)
Query: 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPP-VTGNECYDAD 298
D +GHGTH G +P A++ + KV T +E A
Sbjct: 43 DNNGHGTHVAGIIAAG--------DNNGSGGVGVAPNAKLESVKVLPGSGGTDSELAGAI 94
Query: 299 ILAAFDMAIHDGVDVLSVSLGGG-----PSKFFNDSTAIGSFHAVKHGMVVICSAGNSGP 353
AA + + V+++SLG D A+ A G + + +AGN G
Sbjct: 95 EWAA---ERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNG--ADNKGSLFVVAAGNGGD 149
Query: 354 TDSTVSNIAPWQ----ITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLIS 409
P ITVGA T + + S+ G P + + P I
Sbjct: 150 YADNNPVSDPASANNIITVGAVTENGTIADF--------------SNYGGPVDGIKPDIV 195
Query: 410 A---ADAKAANASTEVALLCEAGT 430
A + +GT
Sbjct: 196 APGGNILSSGPGGDLGGYDSHSGT 219
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 522 PAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGT 581
+A+FS+ G +V D+ APGV I++ Y +SGT
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSP------GGGYG-------YMSGT 224
Query: 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTA 615
SM+ PHV+G LL +L+P + A IK AI+++A
Sbjct: 225 SMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+A FS+ G + +KPDI APG I+++ GP + +++ SGTSM+
Sbjct: 177 IADFSNYGGPV---DGIKPDIVAPGGNILSS-----GPGGDLGG-----YDSHSGTSMAA 223
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
P V+G LL + +P +P +++ ++TTA+
Sbjct: 224 PLVAGAAALLLSANPSLTPETLRALLVTTAT 254
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 36/143 (25%)
Query: 514 ATTELGLKPAPIMAAFSSKGPSSVAPEI-LKPDITAPGVTIIAAYTEAAGPTNEDYDRRR 572
A ++ M+ FSS GP+ P++ LKPDITAPG I + N Y
Sbjct: 222 ANKKVPNPNGGQMSGFSSWGPT---PDLDLKPDITAPGGNIYSTV-----NDNT-YGY-- 270
Query: 573 IPFNALSGTSMSCPHVSGIVGL----LKTLHPEWSPA----AIKSAIMTTASIQDNNKGQ 624
+SGTSM+ PHV+G L LK +P+ S +K+ +M TA
Sbjct: 271 -----MSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA--------T 317
Query: 625 ILNASSYKATPFS---YGAGHIQ 644
S T +S GAG I
Sbjct: 318 PPLDSEDTKTYYSPRRQGAGLID 340
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 73/269 (27%), Positives = 108/269 (40%), Gaps = 32/269 (11%)
Query: 158 IWKKARY-GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIG 216
+W K Y GE ++ +D+GV P +F SK K E + K +
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAF----RLDDDSKAKYSEEFEAKKK---KAGIGY 54
Query: 217 ARYFN----KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKG 272
+Y+N Y A + + D HG H GN + + G+ KG A
Sbjct: 55 GKYYNEKVPFAYNYADNNDDILDED--DGSSHGMHVAGIVAGNGDEEDNGEGI-KGVA-- 109
Query: 273 GSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFF--NDST 330
P+A++ A KV P G+ YD A + A+ G DV+++SL G + F +D
Sbjct: 110 --PEAQLLAMKVFSNPEGGST-YDDAYAKAIEDAVKLGADVINMSL-GSTAGFVDLDDPE 165
Query: 331 AIGSFHAVKHGMVVICSAGNSG----PTDSTVSNIAPWQITVGASTMDRDF---PSY-VV 382
A + G+VV+ +AGN G T ++ P TVG+ D S
Sbjct: 166 QQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK 225
Query: 383 VSNNKRYKGQSLSSKGL-PSNKLFPLISA 410
V N + SS G P L P I+A
Sbjct: 226 VPNPNGGQMSGFSSWGPTPDLDLKPDITA 254
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 529 FSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHV 588
FSS GP+ LKPD+ APG I++ Y A G + LSGTSM+ P+V
Sbjct: 191 FSSWGPT--NELYLKPDVAAPGGNILSTYPLAGGG-----------YAVLSGTSMATPYV 237
Query: 589 SGIVGLLKTL-HPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
+G LL H + SPA ++ + +TA + G +A A GAG +
Sbjct: 238 AGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT--SALPDLAPVAQQGAGLVN 292
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 501 VNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEA 560
V ++ P +A+FSS+GP+ +KPD+ APG I++A +
Sbjct: 177 VGASNNPSVSNGEGGLGQSDNS-DTVASFSSRGPT--YDGRIKPDLVAPGTGILSARSGG 233
Query: 561 AGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLL----------KTLHPEWSPAAIKSA 610
G + + + SGTSM+ P V+G LL +P S A +K+
Sbjct: 234 GGIGDTSDS----AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKAL 287
Query: 611 IMTTA 615
++ +A
Sbjct: 288 LINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602
DI APG I+++ T G + LSGTSM+ P V+G+ LL + +P+
Sbjct: 181 GVDIAAPGGDILSSPTTGGGG-----------YATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 603 SPAAIKSAIMTT 614
+PA +K+A+++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKV--CWPPVTGNE 293
D P D GHGTH N + +G G +P+A + AY+V C T
Sbjct: 62 DDPMDCQGHGTHVAGIIAAN----PNAYGF-----TGVAPEATLGAYRVFGCSGSTT--- 109
Query: 294 CYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSG 352
+ I+AAF A DG DV++ SL GGPS + D A+ + V G+VV +AGN G
Sbjct: 110 --EDTIIAAFLRAYEDGADVITASL-GGPSGWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 527 AAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCP 586
A+FSS GP E+ ++ APGV I++ Y N DY LSGTSM+ P
Sbjct: 163 ASFSSTGP-----EV---ELAAPGVDILSTYP------NNDYAY-------LSGTSMATP 201
Query: 587 HVSGIVGLLKTLHPEWSPAAIKSAIMTT 614
HV+G+ L+ + PE + A ++ A+ T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
P D +GHGTH G V G G A G + ++ K +G +
Sbjct: 59 PMDDNGHGTHVAGIIGA-------VGNNGIGIA-GVAWNVKIMPLKFLGADGSG---TTS 107
Query: 298 DILAAFDMAIHDGVDVLSVSLGG-GPSKFFNDSTAIGSFHAVKHGMVVICSAGNSG---- 352
D + A D A+ G +++ S GG GPS+ D AI A+ G++ + +AGN G
Sbjct: 108 DAIKAIDYAVDMGAKIINNSWGGGGPSQALRD--AIA--RAIDAGILFVAAAGNDGTNND 163
Query: 353 -----PTDSTVSNIAPWQITVGAST 372
P + NI I+V A+
Sbjct: 164 KTPTYPASYDLDNI----ISVAATD 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-11
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 93 EDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLH 137
+I YSY NGFAAKL + A ++ KHP V V +Q +LH
Sbjct: 32 GASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 7e-11
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+A FS +GP+ +KPDI APGV I+ A P + SGTS++
Sbjct: 359 IAIFSGRGPT--RDGRIKPDIAAPGVNILTAS-----PGGG--------YTTRSGTSVAA 403
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASI 617
V+G LL +W + I
Sbjct: 404 AIVAGACALLL----QWGIVRGNDPYLYGEKI 431
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 8e-11
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
D GHGTH T GG G+ G A P+A + KV +
Sbjct: 39 VFDAGGHGTHVSGTIGG-----GGAKGVYIGVA----PEADLLHGKVL----DDGGGSLS 85
Query: 298 DILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFH-AVKH-----GMVVICSAGNS 351
I+A + A+ DV+S+SLGG + AV+ G + + SAGN
Sbjct: 86 QIIAGMEWAVEKDADVVSMSLGG-------TYYSEDPLEEAVEALSNQTGALFVVSAGNE 138
Query: 352 GPTDSTVSNIAPWQITVGASTMDRD 376
G S A ++VGA +DRD
Sbjct: 139 GHGTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 51/161 (31%), Positives = 68/161 (42%), Gaps = 40/161 (24%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKV--CWPPVTGNE 293
D D +GHGTH T G G G + KA + A KV C T
Sbjct: 57 DPDSDCNGHGTHVAGTVG--------------GKTYGVAKKANLVAVKVLDCNGSGTL-- 100
Query: 294 CYDADILAAFDMAIHDGVD-----VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSA 348
+ I+A + +D V ++SLGGG S + + A AV G+VV+ +A
Sbjct: 101 ---SGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA----AAVNAGVVVVVAA 153
Query: 349 GNSGPTDSTVSNI----APWQITVGASTMDRDFPSYVVVSN 385
GNS D+ N AP ITVGA+ D S+ SN
Sbjct: 154 GNSN-QDA--CNYSPASAPEAITVGATDSDDARASF---SN 188
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV I++A+ G LSGTSM+ PHV+G+ L +L P+ SP
Sbjct: 194 DIFAPGVDILSAW---IGSDTA--------TATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 605 AAIKSAIMTTAS 616
A +K+ ++ A+
Sbjct: 243 AEVKARLLNLAT 254
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 4e-10
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 231 LNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGT-AKGGSPKARVAAYKVCWPPV 289
+ +D +GHGTH L G G +P+A + A KV
Sbjct: 29 TGDDNNDYQDGNGHGTHVAGIIAA----------LDNGVGVVGVAPEADLYAVKVL---- 74
Query: 290 TGNE---CYDADILAAFDMAIHDGVDVLSVSLGGG-PSKFFNDSTAIGSFHAVKHGMVVI 345
N+ +DI+A + AI +G+D++++SLGG S + AI A G++V+
Sbjct: 75 --NDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALRE--AIKK--AYAAGILVV 128
Query: 346 CSAGNSGPTDSTVSNIA--PWQITVGASTMDRDFPSY 380
+AGNSG DS+ A P I VGA + + S+
Sbjct: 129 AAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRASF 165
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 15/79 (18%)
Query: 525 IMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMS 584
++A FSS+GPS+ +KPDI+APGV I +A Y + SGTSM+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAVP------GGGYG-------SSSGTSMA 230
Query: 585 CPHVSGIVGLLKTLHPEWS 603
PHV+G+ LL + +P
Sbjct: 231 APHVAGVAALLWSANPSLI 249
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 47/160 (29%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297
P D +GHGTHT+ T GN G G G +P AR A + N DA
Sbjct: 48 PYDDNGHGTHTMGTMVGN---------DGDGQQIGVAPGARWIACRAL----DRNGGNDA 94
Query: 298 DILAAFD--MAIHD----------GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVI 345
D L +A D DV++ S GG A+ ++ A G+ +
Sbjct: 95 DYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWRAA--GIFPV 152
Query: 346 CSAGNSGPTDSTVSN---IAPWQITVGASTMDR---DFPS 379
+AGN GP ST++ P VGA+ + DF S
Sbjct: 153 FAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSS 192
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-09
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 425 LCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL---ADP 481
C L VKGKI++ RG + ++K + A AGA G+++ N G
Sbjct: 21 GCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTGGLGGTVGDPSD 80
Query: 482 HLLPASHINFTDGADL 497
+P I++ DG L
Sbjct: 81 VTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
D +GHGTH A+ G G A G +PKA++ KV +G+
Sbjct: 62 SDAMDDNGHGTHVAGII-------AAATNNGTGVA-GVAPKAKIMPVKVLDANGSGS--- 110
Query: 296 DADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSF--HAVKHGMVVICSAGNSGP 353
ADI A G V+++SLGGG STA+ +A G+VV+ +AGN G
Sbjct: 111 LADIANGIRYAADKGAKVINLSLGGGL-----GSTALQEAINYAWNKGVVVVAAAGNEGV 165
Query: 354 TDSTVSNIAPWQITVGASTMDR---DFPSY 380
+ + P I V A+ D F +Y
Sbjct: 166 SSVSYPAAYPGAIAVAATDQDDKRASFSNY 195
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 23/121 (19%)
Query: 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADI 299
DK GHGT N G KG +P + +Y+V + + I
Sbjct: 51 DKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVFG---SCGSAESSWI 95
Query: 300 LAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFH--------AVKHGMVVICSAGNS 351
+ A A DGVDV+++SLGG ++ A G +V+ +AGN
Sbjct: 96 IKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGND 155
Query: 352 G 352
G
Sbjct: 156 G 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
D++APG I++ P DY +SGTSM+ PHV+G+ LL + P S
Sbjct: 200 DVSAPGGGILSTT-----PDG-DYA-------YMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 605 AAIKSAIMTTA 615
+ ++ A+ TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 25/157 (15%)
Query: 218 RYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKA 277
R Y AV ++ + + D D HGTH G G G +P A
Sbjct: 24 RVSEASYYVAVN--DAGYASNGDGDSHGTHVAGVIAAARD------GGGMH---GVAPDA 72
Query: 278 RVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGS--- 334
+ + + + DADI AA+D GV +++ S GG P+ +T GS
Sbjct: 73 TLYSARASASAGSTFS--DADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130
Query: 335 ---------FHAVKHGMVVICSAGNSGPTDSTVSNIA 362
A G + + +AGN G + +++ A
Sbjct: 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAA 167
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 43/174 (24%), Positives = 60/174 (34%), Gaps = 24/174 (13%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
DT D DGHGTH G +S L KG A PKA++ + +
Sbjct: 48 DTKDDVDGHGTHVAGIIAGK-GNDSSSISLYKGVA----PKAKLYFQDIGDTSGNLSSPP 102
Query: 296 DADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKH-GMVVICSAGNSGPT 354
D + L F G + S S G + + A + ++ + SAGN G
Sbjct: 103 DLNKL--FSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGND 160
Query: 355 DSTVS-------NIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQ---SLSSKG 398
S N+ +TVGAS S + S SS+G
Sbjct: 161 GSNTIGSPATAKNV----LTVGASNNPS--VSNGEGGLGQSDNSDTVASFSSRG 208
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
A+FSS GP+ A LKPD+ A G I G N Y +GTS SC
Sbjct: 186 KASFSSIGPT--ADGRLKPDVMALGTGIYVI----NGDGNITY---------ANGTSFSC 230
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
P ++G++ L HP W+ IK AI+ +AS
Sbjct: 231 PLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-07
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 411 ADAKAANASTEVALLCEAGTLDPKK--VKGKILVCLRGDNARIDKGQQALLAGAVGMVLA 468
+ + C GT D VKGKI++ RG + +K + A AGA +++
Sbjct: 18 PPSSPVGVVAGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIY 77
Query: 469 NAQENGNELLADPHL------LPASHINFTDGADLFR 499
N ++ + L +P I++ DG L
Sbjct: 78 NNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLS 114
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 508 VGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEIL-KPDITAPGVTIIAAYTEAAGPTNE 566
V Y P ++F G PE+ KPD+TAP + GP N
Sbjct: 154 VDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPPN- 212
Query: 567 DYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTA 615
GTS + PH +G+ L+ + +P +PA I+ A+ +TA
Sbjct: 213 -----------FFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA 250
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 525 IMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMS 584
++A FS+ G +V D+ APG I + + +Y+ SGTSM+
Sbjct: 220 LVANFSNYGKKNV-------DVFAPGERIYST------TPDNEYET-------DSGTSMA 259
Query: 585 CPHVSGIVGLLKTLHPEWSPAAIKSAIMTTA 615
P VSG+ L+ + +P + +K I+ +
Sbjct: 260 APVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 527 AAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCP 586
A++S+ G D+ APGV I +T G + + + SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGI---WTTGTGRGSAGDYPGGG-YGSFSGTSFASP 214
Query: 587 HVSGIVGLLKTLHPEWSPAAIKSAIMTT 614
+G+ L+ + +P +PA ++ + +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 48/157 (30%), Positives = 63/157 (40%), Gaps = 18/157 (11%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
D D DGHGT A GLG G +P A++ ++ + Y
Sbjct: 34 DPTSDIDGHGTACAGVAAAV-----GNNGLG---VAGVAPGAKLMPVRI---ADSLGYAY 82
Query: 296 DADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDST---AIGSFHAVKHGMVVICSAGNSG 352
+DI A A +G DV+S S GG S S A K G VV+ +AGNSG
Sbjct: 83 WSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK-GGVVLFAAGNSG 141
Query: 353 PTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRY 389
+ S+ P I V A+ + SY SN Y
Sbjct: 142 RSVSSGYAANPSVIAVAATDSNDARASY---SNYGNY 175
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 20/89 (22%)
Query: 527 AAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCP 586
++FS GP D+ APG I++ G SGTS + P
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSLSPGGDGLAT------------TSGTSFAAP 230
Query: 587 HVSGIVGLLKTLHPEWSPAAIKSAIMTTA 615
VSG L+++ P+ + A ++ I TA
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATA 259
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 64/256 (25%), Positives = 90/256 (35%), Gaps = 50/256 (19%)
Query: 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY 224
GE +I +DTGV +S L + + + K A L G Y
Sbjct: 1 GEGVVIAIVDTGV-----DYSHPDLDIYGNFSWKLKFDYK-AYLLPGMDKWGGFY----- 49
Query: 225 AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGN-FVAKASVFGLGKGTAKGGSPKARVAAYK 283
D HGT S A G + GK +G +P A++AA K
Sbjct: 50 ---------VIMY--DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVK 98
Query: 284 VCWPPVTGNECYDADILAAFDMAIHDG---------VDVLSVSLGGGPSKFFNDSTAIG- 333
W G+ Y A FD VDV+S S G S F A G
Sbjct: 99 ALW---FGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGI--SNFAYTGYAPGL 153
Query: 334 -------SFHAVKHGMVVICSAGNSGPTDSTVSN--IAPWQITVGASTMDRDFPSYVVVS 384
G+ ++ +AGN GP T++ A I+VGA+T + D+ + +
Sbjct: 154 DISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAAT-NFDYRPFYLFG 212
Query: 385 NNKRYKGQ--SLSSKG 398
G S SS+G
Sbjct: 213 YLPGGSGDVVSWSSRG 228
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 514 ATTELGLKPAPIMAAFSSKGPSS--VAP--EILKPDITAPGVTIIAAYTEAAGPTNEDYD 569
AT G + A++S+ GP+ AP + T G T
Sbjct: 196 ATDLRGQR-----ASYSNYGPAVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFL- 249
Query: 570 RRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614
GTSM+ PHV+G+ L+K+++P +PA I+S + +T
Sbjct: 250 ---------QGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 544 PDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWS 603
DI APGV I++A A + ++SGTSM+ PHV+G+ L W+
Sbjct: 213 VDIAAPGVDIVSA----APGGG---------YRSMSGTSMATPHVAGVAAL-------WA 252
Query: 604 PAAIKSAIMTTASIQDNNKGQILNASSYKATPFS-YGAGHIQ 644
A K+ A++ G G
Sbjct: 253 EALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLGL 294
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.5 bits (109), Expect = 4e-05
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 522 PAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGT 581
+ +A+FS+ G + DI APGV I++ + LSGT
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNILSL------SAVNTLPGDGADYVTLSGT 361
Query: 582 SMSCPHVSGIVGLLKTLHP-EWSPAAIKSAIMTTA-----SIQDNNKGQILNASSYKATP 635
SM+ PHVSG+ L+ + +P E +PA +++ I+TTA S DN G L AT
Sbjct: 362 SMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATD 421
Query: 636 FSYGAGHIQPNLA 648
+ G +
Sbjct: 422 VAGGTLPANGTGS 434
|
Length = 508 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 545 DITAPGV-TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLK 596
DI APGV TI++ + G +Y+ LSGTSM+ PHVSG+ L+
Sbjct: 209 DIAAPGVGTILSTVPKLDGDGGGNYEY-------LSGTSMAAPHVSGVAALVL 254
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 50/192 (26%)
Query: 211 NRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTA 270
N +++G F +++S +T D HGT LST G G
Sbjct: 26 NLRILGEYDF----------VDNSNNTNYTDDDHGTAVLSTMAGYT----------PGVM 65
Query: 271 KGGSPKARVAAYKVCWPPVTGNECYDADI-----LAAFDMAIHDGVDVLSVSLGGGPSKF 325
G +P A + T + + + +AA + A GVD++S SLG + F
Sbjct: 66 VGTAPNASYYLAR------TEDVASETPVEEDNWVAAAEWADSLGVDIISSSLG--YTTF 117
Query: 326 FNDS--------------TAIGSFHAVKHGMVVICSAGNSGPTDSTVSNI---APWQITV 368
N + + + A GM+V+ SAGN G T A ++V
Sbjct: 118 DNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSV 177
Query: 369 GASTMDRDFPSY 380
GA + + S+
Sbjct: 178 GAVDANGNKASF 189
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 527 AAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGP--TNEDYDRRRIPFNALSGTSMS 584
++SS+GPS KPD+ A I A+ A G + F+ GTSM+
Sbjct: 222 VSWSSRGPSIAG--DPKPDLAA-----IGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMA 274
Query: 585 CPHVSGIVGLL------KTLHPEWSPAAIKSAIMTTA 615
P +G L+ K E+ P +++ +M+TA
Sbjct: 275 TPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYD 296
+D GHGTH T G V G G + A +A G D
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGG---D 88
Query: 297 ADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGS 334
ILA A+ +G DV+S+SLG + G
Sbjct: 89 GGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 546 ITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPA 605
+ APG I + Y R +SGTS + PHVSG LL P +
Sbjct: 208 LAAPGENIYSTD----PDGGNGYGR-------VSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 606 AIKSAIMTTA 615
++ ++TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 434 KKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHL-LPASHINFT 492
K VKGKI + RG+ ++K A AGAVG+++ N + + +P I+
Sbjct: 44 KDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKE 103
Query: 493 DGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGP 534
DG L + S+K+ LT T+ P +A FSS+GP
Sbjct: 104 DGEALKAALESSKK----LT-FNTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465
PL+ + A C+A D VKG I++ RG DK + A GAV +
Sbjct: 20 PLVPLDPERPAG--------CDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAV 71
Query: 466 VLANAQENGNEL---LADPH---LLPASHINFTDGADL 497
++ N +G L P+ +P I GA L
Sbjct: 72 IVVN-NSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 122 |
| >gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 413 AKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQE 472
A A C A T + GKI + RG K A AGA+ +++AN
Sbjct: 17 VLAGAAPASNTDGCTAFT-NAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVA 75
Query: 473 NGNEL----LADPHLLPASHINFTDGADL 497
G + +PA I+ DG L
Sbjct: 76 GGAPITMGGDDPDITIPAVMISQADGDAL 104
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. Length = 118 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 242 DGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301
GHGTH T +A + G G G G A D + A
Sbjct: 61 GGHGTHVAGT-----IAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAA 115
Query: 302 AFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKH-------GMVVICSAGNS 351
A A +G +L S GG ++ + +++ G +V+ SAGNS
Sbjct: 116 AIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNS 172
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 578 LSGTSMSCPHVSGIVGL----LKTLHPEWSPAAIKSAIMTTA 615
++GTSMS P+ G + L LK ++P +++ A+ TA
Sbjct: 368 MNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 794 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.88 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.71 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.31 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.25 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.89 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.83 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.82 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.81 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.78 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.7 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.68 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.67 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.63 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.62 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.61 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.6 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.57 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.56 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.55 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.52 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.51 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.44 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.21 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.19 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.66 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.28 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.77 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.43 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.3 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.12 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.1 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.65 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.63 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.25 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 95.01 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.3 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 91.15 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 87.03 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 85.55 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 84.48 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.58 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=444.74 Aligned_cols=305 Identities=56% Similarity=0.911 Sum_probs=255.7
Q ss_pred ecccccCCccccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCC-ccccccc
Q 038881 134 RKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKD-AKFLCNR 212 (794)
Q Consensus 134 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~-~~~~~n~ 212 (794)
+++++++++.++|+.... ...+|..+++|+||+|||||||||++||+|.+++..+++..|.+.|..+.. ....|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 467889999999988543 122577899999999999999999999999999999999999999998877 5677999
Q ss_pred cccceeeccccc-ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCC
Q 038881 213 KLIGARYFNKGY-AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG 291 (794)
Q Consensus 213 ki~g~~~~~~~~-~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G 291 (794)
|+++.++|.+++ .......+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. +
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~--~ 155 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD--G 155 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC--C
Confidence 999999998765 2201011223566788999999999999999766655566666778999999999999999874 2
Q ss_pred CCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccc
Q 038881 292 NECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGAS 371 (794)
Q Consensus 292 ~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs 371 (794)
.+..+++++||++|++++++|||||||......+.+.+..++..+.++|++||+||||+|+.....++.+||+++|||+
T Consensus 156 -~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~ 234 (307)
T cd04852 156 -GCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS 234 (307)
T ss_pred -CccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEec
Confidence 4789999999999999999999999999854456778888888999999999999999998887888889999999973
Q ss_pred cCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhh
Q 038881 372 TMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARI 451 (794)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~ 451 (794)
+
T Consensus 235 ~------------------------------------------------------------------------------- 235 (307)
T cd04852 235 T------------------------------------------------------------------------------- 235 (307)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred hHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccC
Q 038881 452 DKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSS 531 (794)
Q Consensus 452 ~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 531 (794)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 038881 532 KGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAI 611 (794)
Q Consensus 532 ~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L 611 (794)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|
T Consensus 236 ----------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L 302 (307)
T cd04852 236 ----------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSAL 302 (307)
T ss_pred ----------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 467999999999999875311 1122334689999999999999999999999999999999999999
Q ss_pred HhcCc
Q 038881 612 MTTAS 616 (794)
Q Consensus 612 ~~TA~ 616 (794)
++||+
T Consensus 303 ~~tA~ 307 (307)
T cd04852 303 MTTAY 307 (307)
T ss_pred HHhcC
Confidence 99985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=453.19 Aligned_cols=304 Identities=17% Similarity=0.144 Sum_probs=217.0
Q ss_pred cccccccCCCcccccccc--ccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeec
Q 038881 143 EFLGLERNGRVESNSIWK--KARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYF 220 (794)
Q Consensus 143 ~~~gl~~~~~~~~~~~~~--~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~ 220 (794)
.+|+++.+. ++.+|+ .+.+|+||+|||||||||++||||.++-... +....|.-....+ ...... -+.+++|
T Consensus 294 ~qWgLd~i~---~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~GrdgiDdD-~nG~vd-d~~G~nf 367 (639)
T PTZ00262 294 LQWGLDLTR---LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRKGIDDD-NNGNVD-DEYGANF 367 (639)
T ss_pred cCcCcchhC---chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCccccccc-cCCccc-ccccccc
Confidence 346666544 445665 4568999999999999999999998641000 0001110000000 000000 1123344
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHH
Q 038881 221 NKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADIL 300 (794)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~ 300 (794)
.++ ..++.|.+||||||||||||... ++..+.||||+|+|+++|+++.. | .+..++++
T Consensus 368 Vd~-----------~~~P~D~~GHGTHVAGIIAA~gn--------N~~Gi~GVAP~AkLi~vKVld~~--G-~G~~sdI~ 425 (639)
T PTZ00262 368 VNN-----------DGGPMDDNYHGTHVSGIISAIGN--------NNIGIVGVDKRSKLIICKALDSH--K-LGRLGDMF 425 (639)
T ss_pred cCC-----------CCCCCCCCCcchHHHHHHhcccc--------CCCceeeeecccccceEEEecCC--C-CccHHHHH
Confidence 432 34567899999999999999742 22345899999999999999876 3 47889999
Q ss_pred HHHHHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------cCC----CC
Q 038881 301 AAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST--------------VSN----IA 362 (794)
Q Consensus 301 ~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------------~~~----~a 362 (794)
+||+||++.|++|||||||+. .+...+..++..|.++|++||+||||+|+.... +++ ..
T Consensus 426 ~AI~yA~~~GA~VINmSlG~~---~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~ 502 (639)
T PTZ00262 426 KCFDYCISREAHMINGSFSFD---EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKL 502 (639)
T ss_pred HHHHHHHHCCCCEEEeccccC---CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccC
Confidence 999999999999999999976 234567788889999999999999999864321 111 24
Q ss_pred CceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEE
Q 038881 363 PWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILV 442 (794)
Q Consensus 363 p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 442 (794)
|++|+|||++.+..
T Consensus 503 ~nVIaVGAv~~d~~------------------------------------------------------------------ 516 (639)
T PTZ00262 503 RNVITVSNLIKDKN------------------------------------------------------------------ 516 (639)
T ss_pred CCEEEEeeccCCCC------------------------------------------------------------------
Confidence 67788887543210
Q ss_pred EecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCC
Q 038881 443 CLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKP 522 (794)
Q Consensus 443 ~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 522 (794)
.
T Consensus 517 -------------------------------------------------------------------------------~ 517 (639)
T PTZ00262 517 -------------------------------------------------------------------------------N 517 (639)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCC
Q 038881 523 APIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602 (794)
Q Consensus 523 ~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l 602 (794)
...++.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|
T Consensus 518 ~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~L 577 (639)
T PTZ00262 518 QYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSL 577 (639)
T ss_pred cccccccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCC
Confidence 0134456677622 24999999999999876 489999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccc-ccccccccccCCCccc
Q 038881 603 SPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYG-AGHIQPNLAMDPGLVY 655 (794)
Q Consensus 603 sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G-~G~vn~~~Al~~~lv~ 655 (794)
+++||+++|++||.++... +..+| .|+||+++|++..+.+
T Consensus 578 T~~qV~~iL~~TA~~l~~~-------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 578 SYEEVIRILKESIVQLPSL-------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CHHHHHHHHHHhCccCCCC-------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999999876321 12233 3899999999876644
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=408.85 Aligned_cols=243 Identities=27% Similarity=0.380 Sum_probs=199.7
Q ss_pred ccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCC
Q 038881 159 WKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTP 238 (794)
Q Consensus 159 ~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 238 (794)
|+++++|+||+|||||||||.+||+|.+. +...+|.. ....
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~------------~~~~ 41 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN------------EKTL 41 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC------------CCCC
Confidence 89999999999999999999999999632 01112221 1234
Q ss_pred CCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEcc
Q 038881 239 RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSL 318 (794)
Q Consensus 239 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~Sl 318 (794)
.|..||||||||||+|+. ..+.||||+|+|+.+|++.+. + .+..+.++++|+|+++++++||||||
T Consensus 42 ~d~~gHGT~VAGiIa~~~-----------~~~~GvAp~a~l~~~~v~~~~--~-~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 42 DDGLGHGTFVAGVIASSR-----------EQCLGFAPDAEIYIFRVFTNN--Q-VSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCcHHHHHHHHHccC-----------CCceeECCCCEEEEEEeecCC--C-CchHHHHHHHHHhhhhcCCCEEEeec
Confidence 577899999999999874 124899999999999999876 3 35678899999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCC
Q 038881 319 GGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV--SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSS 396 (794)
Q Consensus 319 G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 396 (794)
|... +.+.++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 108 G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 162 (255)
T cd07479 108 GGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------------- 162 (255)
T ss_pred cCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------------
Confidence 9862 3445677777888999999999999999765443 346689999998543
Q ss_pred CCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc
Q 038881 397 KGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE 476 (794)
Q Consensus 397 ~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 476 (794)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCC----CCCcccCceEeCCce
Q 038881 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV----APEILKPDITAPGVT 552 (794)
Q Consensus 477 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~ 552 (794)
.+.++.|||+|++.+ .++++||||+|||.+
T Consensus 163 ----------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~ 196 (255)
T cd07479 163 ----------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSG 196 (255)
T ss_pred ----------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCC
Confidence 146789999996532 267899999999999
Q ss_pred EEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcCccc
Q 038881 553 IIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHP----EWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 553 I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lsp~~ik~~L~~TA~~~ 618 (794)
|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 197 i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 197 VYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9987654 3788999999999999999999999998 789999999999999986
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=416.00 Aligned_cols=287 Identities=27% Similarity=0.270 Sum_probs=191.7
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
|+||+|||||||||++||||.++.. ..|.-. +.+...+..+.++..+ ....+.|.+||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~--------~d~~~~~~~g~d~~~~----------~~~~~~D~~gH 58 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK--------FDYKAYLLPGMDKWGG----------FYVIMYDFFSH 58 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc--------cCcCCCccCCcCCCCC----------ccCCCCCcccc
Confidence 8999999999999999999975410 001000 0011112222222211 11346789999
Q ss_pred Ccceeeccccccccccccccc-CCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH-------HHHHh--HhCCceEE
Q 038881 245 GTHTLSTAGGNFVAKASVFGL-GKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA-------AFDMA--IHDGVDVL 314 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~-------ai~~a--~~~g~dVI 314 (794)
||||||||||......+.+++ ....+.||||+|+|+.+|+|.... .+....+.. +++|. .+++++||
T Consensus 59 GThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 59 GTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred chhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 999999999986433222221 123569999999999999997541 232333333 34443 36799999
Q ss_pred EEccCCCCCCC-----CCCHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcC--CCCCceEEeccccCCCCccceEEecCC
Q 038881 315 SVSLGGGPSKF-----FNDSTAIGSFH-AVKHGMVVICSAGNSGPTDSTVS--NIAPWQITVGASTMDRDFPSYVVVSNN 386 (794)
Q Consensus 315 N~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~~--~~ap~vitVgAs~~~~~~~~~~~~~~~ 386 (794)
|||||.....+ ..+..+..... +.++|++||+||||+|+...+.. ..++++|+|||++..+..+.
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~------- 208 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF------- 208 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-------
Confidence 99999863211 11233333333 24899999999999998655443 46789999999764321000
Q ss_pred eEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEE
Q 038881 387 KRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMV 466 (794)
Q Consensus 387 ~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi 466 (794)
+.+.+
T Consensus 209 ------------------~~~~~--------------------------------------------------------- 213 (311)
T cd07497 209 ------------------YLFGY--------------------------------------------------------- 213 (311)
T ss_pred ------------------hhhcc---------------------------------------------------------
Confidence 00000
Q ss_pred EeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCce
Q 038881 467 LANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDI 546 (794)
Q Consensus 467 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI 546 (794)
.....+.++.||||||+. ++++||||
T Consensus 214 ----------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv 239 (311)
T cd07497 214 ----------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDL 239 (311)
T ss_pred ----------------------------------------------------ccCCCCCccccccCCCCc--ccCCCCce
Confidence 001135789999999998 89999999
Q ss_pred EeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcC
Q 038881 547 TAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHP------EWSPAAIKSAIMTTA 615 (794)
Q Consensus 547 ~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lsp~~ik~~L~~TA 615 (794)
+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 240 ~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 240 AAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999876532100 011124789999999999999999999999876 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=409.81 Aligned_cols=270 Identities=22% Similarity=0.226 Sum_probs=202.9
Q ss_pred cCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCC
Q 038881 162 ARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDK 241 (794)
Q Consensus 162 g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~ 241 (794)
|++|+||+|||||||||.+||+|.+...+ ++.+...+... .....|.
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~----------------------~l~~~~~~~~~-----------~~~~~d~ 47 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG----------------------DLPGNVNVLGD-----------LDGGSGG 47 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC----------------------CCCcceeeccc-----------cCCCCCC
Confidence 57999999999999999998865322111 11111111110 1234578
Q ss_pred CCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 242 DGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 242 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
.+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||||||..
T Consensus 48 ~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin~S~g~~ 101 (275)
T cd05562 48 GDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIVDDIGYL 101 (275)
T ss_pred CchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 899999999984 67999999999873 3578999999999999999999999986
Q ss_pred CCCC-CCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCCc-CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCC
Q 038881 322 PSKF-FNDSTAIGSFHAVKH-GMVVICSAGNSGPTDSTV-SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKG 398 (794)
Q Consensus 322 ~~~~-~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~-~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~ 398 (794)
...+ .+..+..++.++.++ |++||+||||+|+..... +...|++|+|||++.......+...+
T Consensus 102 ~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~-------------- 167 (275)
T cd05562 102 NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA-------------- 167 (275)
T ss_pred CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc--------------
Confidence 4333 334677888888887 999999999999854333 45789999999986543110000000
Q ss_pred CCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc
Q 038881 399 LPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL 478 (794)
Q Consensus 399 ~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 478 (794)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCc-eEEeee
Q 038881 479 ADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGV-TIIAAY 557 (794)
Q Consensus 479 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~Sa~ 557 (794)
........+.||++||+. ++++||||+|||+ ++.+++
T Consensus 168 ----------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~ 205 (275)
T cd05562 168 ----------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDG 205 (275)
T ss_pred ----------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCC
Confidence 000012355678899987 8899999999975 344444
Q ss_pred cCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCc
Q 038881 558 TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFS 637 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 637 (794)
.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..
T Consensus 206 ~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~ 261 (275)
T cd05562 206 DG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNA 261 (275)
T ss_pred cC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCC
Confidence 33 478999999999999999999999999999999999999999988742 335678
Q ss_pred ccccccccccccC
Q 038881 638 YGAGHIQPNLAMD 650 (794)
Q Consensus 638 ~G~G~vn~~~Al~ 650 (794)
||||+||+.+|++
T Consensus 262 ~G~G~vda~~Av~ 274 (275)
T cd05562 262 SGSGLVDADRAVA 274 (275)
T ss_pred cCcCcccHHHHhh
Confidence 9999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=420.77 Aligned_cols=315 Identities=29% Similarity=0.363 Sum_probs=236.8
Q ss_pred ccccccC-CCCceEEEEecCCCCCCCCCCcCCCCCCCCC-----ccccccccCCCccccccccccceeecccccccccCC
Q 038881 157 SIWKKAR-YGEDTIIGNLDTGVWPESKSFSDEGLGPIPS-----KWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGP 230 (794)
Q Consensus 157 ~~~~~g~-~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~ 230 (794)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. ....+++.+++.+++|.++. .
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~- 73 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNN----D- 73 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCC----C-
Confidence 3788887 9999999999999999999998754332111 11111111 14466778888888888652 0
Q ss_pred CCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCC
Q 038881 231 LNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDG 310 (794)
Q Consensus 231 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g 310 (794)
+.....|..+|||||||||+|...+.. .+..+.||||+|+|+.+|+++....+ .+....+++|++++++.+
T Consensus 74 ---~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~-~~~~~~~~~ai~~a~~~g 144 (346)
T cd07475 74 ---DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG-STYDDAYAKAIEDAVKLG 144 (346)
T ss_pred ---ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC-CCCHHHHHHHHHHHHHcC
Confidence 011245789999999999999863211 13456999999999999999741112 478889999999999999
Q ss_pred ceEEEEccCCCCCC-CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc----------------CCCCCceEEeccccC
Q 038881 311 VDVLSVSLGGGPSK-FFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV----------------SNIAPWQITVGASTM 373 (794)
Q Consensus 311 ~dVIN~SlG~~~~~-~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~----------------~~~ap~vitVgAs~~ 373 (794)
++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+++.
T Consensus 145 ~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~ 224 (346)
T cd07475 145 ADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK 224 (346)
T ss_pred CCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc
Confidence 99999999998422 4556677888889999999999999998643221 123456666666431
Q ss_pred CCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhH
Q 038881 374 DRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDK 453 (794)
Q Consensus 374 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 453 (794)
..
T Consensus 225 ~~------------------------------------------------------------------------------ 226 (346)
T cd07475 225 KV------------------------------------------------------------------------------ 226 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCC
Q 038881 454 GQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKG 533 (794)
Q Consensus 454 ~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 533 (794)
.....+.++.||+||
T Consensus 227 -----------------------------------------------------------------~~~~~~~~~~~S~~G 241 (346)
T cd07475 227 -----------------------------------------------------------------PNPNGGQMSGFSSWG 241 (346)
T ss_pred -----------------------------------------------------------------CCCCCCccCCCcCCC
Confidence 011135788999999
Q ss_pred CCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhh----CCCCCHHH---
Q 038881 534 PSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL----HPEWSPAA--- 606 (794)
Q Consensus 534 p~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~--- 606 (794)
|+. ++++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 242 ~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~ 306 (346)
T cd07475 242 PTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVD 306 (346)
T ss_pred CCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 998 899999999999999998765 47889999999999999999999997 78999876
Q ss_pred -HHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccC
Q 038881 607 -IKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 607 -ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
||++|++||.+.... ...+..+.+.++|+|+||+.+|++
T Consensus 307 ~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 307 LVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 788999999853211 112446678899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=409.23 Aligned_cols=296 Identities=29% Similarity=0.348 Sum_probs=230.3
Q ss_pred cccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccccc-ccccCCCCCC
Q 038881 156 NSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY-AAAVGPLNSS 234 (794)
Q Consensus 156 ~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~-~~~~~~~~~~ 234 (794)
+.+|+.+++|+||+|||||+|||++||+|.++-. .+.++.+.++|..+. .. .....+
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~--~~~~~~ 60 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDG--TNPPVP 60 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCccccc--ccCCCC
Confidence 5899999999999999999999999999986411 112233333443221 00 000012
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVL 314 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVI 314 (794)
...+.|..||||||||||++...+ ..+.||||+|+|+.+|+++.. + ....+.++++|+++++++++||
T Consensus 61 ~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~~~iI 128 (312)
T cd07489 61 DDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS--G-STTEDTIIAAFLRAYEDGADVI 128 (312)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC--C-CCCHHHHHHHHHHHHhcCCCEE
Confidence 335667799999999999998621 345899999999999999865 3 4678889999999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcCCCCCceEEeccccCCCCccceEEecCCeEEee
Q 038881 315 SVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS---TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 315 N~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
|||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 129 n~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------- 188 (312)
T cd07489 129 TASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------- 188 (312)
T ss_pred EeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------
Confidence 99999873 344577888888899999999999999986532 2234567888888631
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCc
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGV 551 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 551 (794)
+.||+|||+. +...||||+|||+
T Consensus 189 -------------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~ 211 (312)
T cd07489 189 -------------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGG 211 (312)
T ss_pred -------------------------------------------------------CCccCCCCCC--CCCcCccEEcCCC
Confidence 4689999988 7889999999999
Q ss_pred eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCccccCCCcccccCCC
Q 038881 552 TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH-PEWSPAAIKSAIMTTASIQDNNKGQILNASS 630 (794)
Q Consensus 552 ~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~ 630 (794)
+|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..-. ..
T Consensus 212 ~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~ 278 (312)
T cd07489 212 NILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA--LP 278 (312)
T ss_pred CEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc--cc
Confidence 9999987632 268999999999999999999999999 999999999999999998754321100 01
Q ss_pred CCCCCCcccccccccccccCCCccc
Q 038881 631 YKATPFSYGAGHIQPNLAMDPGLVY 655 (794)
Q Consensus 631 ~~~~~~~~G~G~vn~~~Al~~~lv~ 655 (794)
.++++.++|+|+||+.+|++..-.+
T Consensus 279 ~~~~~~~~G~G~vn~~~a~~~~~~~ 303 (312)
T cd07489 279 DLAPVAQQGAGLVNAYKALYATTTL 303 (312)
T ss_pred CCCCHhhcCcceeeHHHHhcCCccc
Confidence 1467789999999999999965433
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=429.84 Aligned_cols=407 Identities=22% Similarity=0.243 Sum_probs=236.4
Q ss_pred CCCCceEEEEecCCCCCCCCCCcC-CCCCCCCCccccccccCCCccccccccccceeecccc-cccccCCCC-CCCCCCC
Q 038881 163 RYGEDTIIGNLDTGVWPESKSFSD-EGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG-YAAAVGPLN-SSFDTPR 239 (794)
Q Consensus 163 ~~G~GV~VaVIDTGId~~Hp~f~~-~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~-~~~~~~~ 239 (794)
.+|+||+|||||||||+.||+|++ ++.+++...|++....+... ....+...+.+. ........+ .+.....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~ 75 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP-----GGYYGGGEYTEEIINAALASDNPYDIVPSR 75 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC-----ccccCceEEeHHHHHHHHhcCCccccCcCC
Confidence 479999999999999999999985 56789999999877654321 111111122210 000000111 1234567
Q ss_pred CCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCC-------CCCChHHHHHHHHHhHhC---
Q 038881 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG-------NECYDADILAAFDMAIHD--- 309 (794)
Q Consensus 240 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G-------~~~~~~~i~~ai~~a~~~--- 309 (794)
|..||||||||||||+..+ +..+.||||+|+|+++|++...... ..+...+++.||+|+++.
T Consensus 76 D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~ 147 (455)
T cd07478 76 DENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALE 147 (455)
T ss_pred CCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHH
Confidence 8999999999999998522 3456899999999999999876210 015788999999999874
Q ss_pred --CceEEEEccCCCC-CCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcCCC-CC------ceEEeccccCCCCcc
Q 038881 310 --GVDVLSVSLGGGP-SKFFNDSTAIGSFHAVKH-GMVVICSAGNSGPTDSTVSNI-AP------WQITVGASTMDRDFP 378 (794)
Q Consensus 310 --g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~-ap------~vitVgAs~~~~~~~ 378 (794)
.+.|||||||... .+...++++.++..+.++ |++||+||||+|....+.... .+ --+.|+.-.. .+.
T Consensus 148 ~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~--~~~ 225 (455)
T cd07478 148 LNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEK--GFN 225 (455)
T ss_pred hCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCc--ceE
Confidence 5789999999873 445667788888887776 999999999999755444321 00 0133332111 110
Q ss_pred ceEEec--CCeEEe-----eeecCCCCCC--CCceeceEEccchhhcccchhhccccCC-CCCCCCCccceEEEEecCCc
Q 038881 379 SYVVVS--NNKRYK-----GQSLSSKGLP--SNKLFPLISAADAKAANASTEVALLCEA-GTLDPKKVKGKILVCLRGDN 448 (794)
Q Consensus 379 ~~~~~~--~~~~~~-----g~~~~~~~~~--~~~~~plv~~~~~~~~~~~~~~~~~c~~-~~~~~~~~~gkivl~~~g~~ 448 (794)
-++-.. +...+. |+....-... ....+.+.+.. ...|-. ...++..-...|.+.
T Consensus 226 ~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~-----------t~i~v~y~~~~~~~g~~~i~i~----- 289 (455)
T cd07478 226 LEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEG-----------TTVYVYYYLPEPYTGDQLIFIR----- 289 (455)
T ss_pred EEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECC-----------eEEEEEEcCCCCCCCCeEEEEE-----
Confidence 000000 000000 0000000000 00000000000 000000 000000011111111
Q ss_pred hhhhHHHHHHHcCceEEEEeccCC-CCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEec------eeeecCC
Q 038881 449 ARIDKGQQALLAGAVGMVLANAQE-NGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRA------TTELGLK 521 (794)
Q Consensus 449 ~~~~~~~~~~~~Ga~gvi~~n~~~-~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~------~~~~~~~ 521 (794)
..+ ...|-.-+.++.... .+. ...++|...+..++..++ ..... .++... .++....
T Consensus 290 -----~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~~~~--~tit~Pa~~~~vitVga~~ 353 (455)
T cd07478 290 -----FKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EPDPY--TTLTIPGTARSVITVGAYN 353 (455)
T ss_pred -----ccC-CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cCCCC--ceEecCCCCCCcEEEEEEe
Confidence 001 112333333332211 111 112333332222221111 11111 122211 1122222
Q ss_pred -CCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC-
Q 038881 522 -PAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH- 599 (794)
Q Consensus 522 -~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~- 599 (794)
..+.++.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++
T Consensus 354 ~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~ 418 (455)
T cd07478 354 QNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGI 418 (455)
T ss_pred CCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhch
Confidence 235699999999998 899999999999999999986 489999999999999999999999975
Q ss_pred -----CCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccccc
Q 038881 600 -----PEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641 (794)
Q Consensus 600 -----p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 641 (794)
|.|++++||++|++||+++.. ..+++++||||
T Consensus 419 ~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 419 VRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred hccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 567999999999999998742 25678999998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=396.18 Aligned_cols=336 Identities=24% Similarity=0.326 Sum_probs=264.8
Q ss_pred ccccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCC--C----------------cceEEEec---ce
Q 038881 45 LFSMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNP--E----------------DAIFYSYT---RH 103 (794)
Q Consensus 45 ~~~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~----------------~~~~~~y~---~~ 103 (794)
....++++|||.|+..... +....|.++++...+..... . ..+.+.|. .+
T Consensus 75 i~~~~~~~YiV~f~~~~~q---------~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~ 145 (501)
T KOG1153|consen 75 IEEALPSRYIVVFKPDASQ---------QKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRV 145 (501)
T ss_pred hhcccccceEEEeCCCccH---------HHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccch
Confidence 4457899999999976543 66778888888776432210 0 01334443 38
Q ss_pred eeeEEEEeCHHHHHHHHcCCCeEEEEecceecccc-----cCCccccccccCCCccc--cccc----cccCCCCceEEEE
Q 038881 104 INGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHT-----THSWEFLGLERNGRVES--NSIW----KKARYGEDTIIGN 172 (794)
Q Consensus 104 ~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~gl~~~~~~~~--~~~~----~~g~~G~GV~VaV 172 (794)
|+|+...++..-+..++++|-++.++++..++... .+....|||.++++... ..-| ..-..|+||..+|
T Consensus 146 ~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv 225 (501)
T KOG1153|consen 146 FRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYV 225 (501)
T ss_pred hhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEE
Confidence 88999999999999999999999999988776543 22333457766665421 1112 1223899999999
Q ss_pred ecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeecc
Q 038881 173 LDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTA 252 (794)
Q Consensus 173 IDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGii 252 (794)
+||||+.+||+|.++ +.|- .| +.. -....|++||||||||+|
T Consensus 226 ~DTGVni~H~dFegR------a~wG-a~-------------------i~~------------~~~~~D~nGHGTH~AG~I 267 (501)
T KOG1153|consen 226 LDTGVNIEHPDFEGR------AIWG-AT-------------------IPP------------KDGDEDCNGHGTHVAGLI 267 (501)
T ss_pred ecccccccccccccc------eecc-cc-------------------cCC------------CCcccccCCCcceeeeee
Confidence 999999999999876 3341 11 110 124568999999999999
Q ss_pred cccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC---------CceEEEEccCCCCC
Q 038881 253 GGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD---------GVDVLSVSLGGGPS 323 (794)
Q Consensus 253 ag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~ 323 (794)
+++. .|||.+++|+++||++++ | ++..+++++++|++++. +..|.|||+|+.
T Consensus 268 ~sKt--------------~GvAK~s~lvaVKVl~~d--G-sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-- 328 (501)
T KOG1153|consen 268 GSKT--------------FGVAKNSNLVAVKVLRSD--G-SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-- 328 (501)
T ss_pred eccc--------------cccccccceEEEEEeccC--C-cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc--
Confidence 9986 688999999999999999 5 78999999999999975 578999999997
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCC-CCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCC
Q 038881 324 KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN-IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSN 402 (794)
Q Consensus 324 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~-~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 402 (794)
..-++..|+++|.+.|+++++||||+..++|..++ .+..+|||||++..
T Consensus 329 --~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~---------------------------- 378 (501)
T KOG1153|consen 329 --RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN---------------------------- 378 (501)
T ss_pred --ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc----------------------------
Confidence 34567888889999999999999999999888775 78899999997542
Q ss_pred ceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCC
Q 038881 403 KLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPH 482 (794)
Q Consensus 403 ~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~ 482 (794)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCC
Q 038881 483 LLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAG 562 (794)
Q Consensus 483 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~ 562 (794)
+.+|.||+||+|+ ||.|||++|+|+|.++..
T Consensus 379 -----------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~ 409 (501)
T KOG1153|consen 379 -----------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN 409 (501)
T ss_pred -----------------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc
Confidence 5899999999999 999999999999988532
Q ss_pred CCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHhcCc
Q 038881 563 PTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE---------WSPAAIKSAIMTTAS 616 (794)
Q Consensus 563 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------lsp~~ik~~L~~TA~ 616 (794)
.....||||||+|||||++|.++.++|. .+|.++|..+..-..
T Consensus 410 -----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 410 -----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred -----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 5678999999999999999999999883 378888877776544
|
|
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-46 Score=392.15 Aligned_cols=248 Identities=24% Similarity=0.271 Sum_probs=203.1
Q ss_pred cccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCC
Q 038881 158 IWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237 (794)
Q Consensus 158 ~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 237 (794)
+|..+++|+||+|||||+|||++||+|.+....+. ..+... ...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~~-----------~~~ 45 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAAA-----------ACQ 45 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCcccc-----------CCC
Confidence 79999999999999999999999999986421110 000000 124
Q ss_pred CCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEc
Q 038881 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVS 317 (794)
Q Consensus 238 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~S 317 (794)
..|..+|||||||||+|+. ...+.||||+|+|+.+|++..... .++..++++||++|+++|++|||||
T Consensus 46 ~~~~~gHGT~VAgii~g~~----------~~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g~~VIN~S 113 (267)
T cd07476 46 DGGASAHGTHVASLIFGQP----------CSSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQGAHIINIS 113 (267)
T ss_pred CCCCCCcHHHHHHHHhcCC----------CCCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCCCCEEEec
Confidence 4567899999999999874 123589999999999999987632 2457899999999999999999999
Q ss_pred cCCCCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCC
Q 038881 318 LGGGPS-KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSS 396 (794)
Q Consensus 318 lG~~~~-~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 396 (794)
||.... ......+..++..+.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 114 ~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------- 171 (267)
T cd07476 114 GGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------------- 171 (267)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------------
Confidence 997632 234456778888899999999999999998777777788999999986431
Q ss_pred CCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc
Q 038881 397 KGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE 476 (794)
Q Consensus 397 ~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 476 (794)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEee
Q 038881 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAA 556 (794)
Q Consensus 477 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa 556 (794)
+.++.||+||+.. .||||+|||.+|+++
T Consensus 172 -----------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~ 199 (267)
T cd07476 172 -----------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGA 199 (267)
T ss_pred -----------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceee
Confidence 2456799999764 388999999999998
Q ss_pred ecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhcCccccC
Q 038881 557 YTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE----WSPAAIKSAIMTTASIQDN 620 (794)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lsp~~ik~~L~~TA~~~~~ 620 (794)
.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 200 ~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 200 ALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred cCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 876 47899999999999999999999999887 8999999999999999854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=382.81 Aligned_cols=238 Identities=26% Similarity=0.331 Sum_probs=193.8
Q ss_pred eEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcc
Q 038881 168 TIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTH 247 (794)
Q Consensus 168 V~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGTh 247 (794)
|+|||||||||++||+|+++ ++..+++.. ....|..+||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~~-------------~~~~~~~~HGT~ 41 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFAG-------------PGAPAPSAHGTA 41 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCCC-------------CCCCCCCCCHHH
Confidence 68999999999999999753 111111111 134568899999
Q ss_pred eeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCCC
Q 038881 248 TLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFN 327 (794)
Q Consensus 248 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 327 (794)
|||||++... .. .||||+|+|+.+|++.....+..++..++++||+||++.+++|||||||+. ..
T Consensus 42 vAgiia~~~~---------~~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~----~~ 106 (239)
T cd05561 42 VASLLAGAGA---------QR--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP----PN 106 (239)
T ss_pred HHHHHhCCCC---------CC--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC----CC
Confidence 9999999751 11 799999999999999865311236788999999999999999999999975 23
Q ss_pred CHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceec
Q 038881 328 DSTAIGSFHAVKHGMVVICSAGNSGPTD-STVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFP 406 (794)
Q Consensus 328 ~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p 406 (794)
..+..++.++.++|++||+||||+|+.. ..++...+++|+||+++.+
T Consensus 107 ~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------------- 154 (239)
T cd05561 107 ALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------------- 154 (239)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------------
Confidence 5677788899999999999999999764 3455567899999985432
Q ss_pred eEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccE
Q 038881 407 LISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPA 486 (794)
Q Consensus 407 lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~ 486 (794)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCC
Q 038881 487 SHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNE 566 (794)
Q Consensus 487 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~ 566 (794)
+.++.||++|+.. ||.|||.+|+++.+.
T Consensus 155 -------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~------- 182 (239)
T cd05561 155 -------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG------- 182 (239)
T ss_pred -------------------------------------CCccccCCCCCcc--------eEEccccceecccCC-------
Confidence 3567899999987 999999999987654
Q ss_pred CCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccccc
Q 038881 567 DYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641 (794)
Q Consensus 567 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 641 (794)
+.|..++|||||||||||++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 183 ------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 183 ------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred ------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 4799999999999999999999999999 9999999999999998743 3456789988
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=392.01 Aligned_cols=285 Identities=39% Similarity=0.552 Sum_probs=218.1
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC-------CCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS-------SFDT 237 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~-------~~~~ 237 (794)
|+||+|||||+|||++||+|.+.. ..+.++...++|.... ..+.+. ....
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDD---YDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCC---CCcccccccccccccCC
Confidence 899999999999999999997531 2233444555554321 000000 1122
Q ss_pred CCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEc
Q 038881 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVS 317 (794)
Q Consensus 238 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~S 317 (794)
..|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++.. + .+...+++++|+++++++++|||||
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~--~-~~~~~~~~~ai~~a~~~~~~Iin~S 126 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPG--G-SGTTDVIIAAIEQAVDDGMDVINLS 126 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCC--C-CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 456899999999999987522 3345899999999999999854 2 4788999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEeccccCCCCccceEEecCCeEEeeeecC
Q 038881 318 LGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV--SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLS 395 (794)
Q Consensus 318 lG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 395 (794)
||.... ...+.+..++.++.++|++||+||||+|...... +...+++|+|||++....
T Consensus 127 ~g~~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------- 186 (295)
T cd07474 127 LGSSVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------- 186 (295)
T ss_pred CCCCCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-------------------
Confidence 998732 2456788888899999999999999998765544 346789999998642100
Q ss_pred CCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc
Q 038881 396 SKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN 475 (794)
Q Consensus 396 ~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~ 475 (794)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccC-CCCCCCCCCcccCceEeCCceEE
Q 038881 476 ELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSS-KGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 476 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS-~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
........|++ .|++. ...+||||+|||++|+
T Consensus 187 ---------------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~ 219 (295)
T cd07474 187 ---------------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIM 219 (295)
T ss_pred ---------------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceE
Confidence 00123334444 45554 7889999999999999
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCC
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKAT 634 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 634 (794)
+++... ...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..++
T Consensus 220 ~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~ 281 (295)
T cd07474 220 STAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYP 281 (295)
T ss_pred eeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCC
Confidence 998763 1378999999999999999999999999999999999999999998755432 1235
Q ss_pred CCcccccccccccc
Q 038881 635 PFSYGAGHIQPNLA 648 (794)
Q Consensus 635 ~~~~G~G~vn~~~A 648 (794)
+..+|+|+||+.+|
T Consensus 282 ~~~~G~G~l~~~~A 295 (295)
T cd07474 282 VSRQGAGRVDALRA 295 (295)
T ss_pred hhccCcceeccccC
Confidence 67899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=381.12 Aligned_cols=245 Identities=30% Similarity=0.375 Sum_probs=196.8
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCC-CCCCCCCC
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT-PRDKDGHG 245 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~-~~d~~gHG 245 (794)
||+|||||||||++||+|.... ...+.++.+.++|.+. ... ..|..+||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~-------------------~~~~~~i~~~~~~~~~-----------~~~~~~~~~~HG 50 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH-------------------LFKNLRILGEYDFVDN-----------SNNTNYTDDDHG 50 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc-------------------cccCCceeeeecCccC-----------CCCCCCCCCCch
Confidence 7999999999999999994210 1123456667777654 112 36788999
Q ss_pred cceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCC
Q 038881 246 THTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKF 325 (794)
Q Consensus 246 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 325 (794)
|||||||+|.. .+.+.||||+|+|+.+|+.....+. ......++.|++++.+.+++|||||||......
T Consensus 51 T~vagiia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~ 119 (261)
T cd07493 51 TAVLSTMAGYT----------PGVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN 119 (261)
T ss_pred hhhheeeeeCC----------CCCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 99999999974 2346899999999999997644222 245667899999999999999999999873221
Q ss_pred C------------CCHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCCCCCceEEeccccCCCCccceEEecCCeEEe
Q 038881 326 F------------NDSTAIGSFHAVKHGMVVICSAGNSGPTD---STVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYK 390 (794)
Q Consensus 326 ~------------~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~ 390 (794)
. ...+..++..+.++|++||+||||+|... ...+...+++|+|||.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~---------------- 183 (261)
T cd07493 120 PTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN---------------- 183 (261)
T ss_pred cccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC----------------
Confidence 1 13467788889999999999999999763 3455577999999985321
Q ss_pred eeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEecc
Q 038881 391 GQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANA 470 (794)
Q Consensus 391 g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~ 470 (794)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCC
Q 038881 471 QENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPG 550 (794)
Q Consensus 471 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 550 (794)
+.++.||++||+. ++++||||+|||
T Consensus 184 -----------------------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G 208 (261)
T cd07493 184 -----------------------------------------------------GNKASFSSIGPTA--DGRLKPDVMALG 208 (261)
T ss_pred -----------------------------------------------------CCCCccCCcCCCC--CCCcCCceEecC
Confidence 3678899999987 899999999999
Q ss_pred ceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 551 VTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 551 ~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
.+|++.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 209 ~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 209 TGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999985433 47899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=379.23 Aligned_cols=247 Identities=32% Similarity=0.414 Sum_probs=194.7
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
|+||+|||||+|||++||+|.+. |.+... ..+...+.+.+.. .....+.|..+|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d~~--------~~~~~~~d~~~H 54 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFDPV--------GNTPLPYDDNGH 54 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCcccccccccCC--------CCCCCCCCCCCc
Confidence 89999999999999999999764 111000 0000001111100 012345678899
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh------------CCce
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH------------DGVD 312 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~------------~g~d 312 (794)
||||||||+|... .+...||||+|+|+.+|+++.. + +...+++++++++++ .+++
T Consensus 55 GT~vagii~g~~~---------~~~~~GvAp~a~i~~~~~~~~~--~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 121 (264)
T cd07481 55 GTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRN--G--GNDADYLRCAQWMLAPTDSAGNPADPDLAPD 121 (264)
T ss_pred hhhhhhheeecCC---------CCCceEECCCCeEEEEEeecCC--C--CcHHHHHHHHHHHHhcccccccccccccCCe
Confidence 9999999998741 2223899999999999999876 3 778899999999875 7899
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cCCCCCceEEeccccCCCCccceEEecCCeEE
Q 038881 313 VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST---VSNIAPWQITVGASTMDRDFPSYVVVSNNKRY 389 (794)
Q Consensus 313 VIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 389 (794)
|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+|||++.+
T Consensus 122 Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------------- 184 (264)
T cd07481 122 VINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------------- 184 (264)
T ss_pred EEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------------
Confidence 99999998732 24556667778889999999999999865443 34567899999985432
Q ss_pred eeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEec
Q 038881 390 KGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLAN 469 (794)
Q Consensus 390 ~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 469 (794)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeC
Q 038881 470 AQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549 (794)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 549 (794)
+.++.||++||.. .+++||||+||
T Consensus 185 ------------------------------------------------------~~~~~~S~~g~~~--~~~~~~dv~Ap 208 (264)
T cd07481 185 ------------------------------------------------------DVLADFSSRGPST--YGRIKPDISAP 208 (264)
T ss_pred ------------------------------------------------------CCCccccCCCCCC--CCCcCceEEEC
Confidence 3678899999988 79999999999
Q ss_pred CceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhcCc
Q 038881 550 GVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE--WSPAAIKSAIMTTAS 616 (794)
Q Consensus 550 G~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lsp~~ik~~L~~TA~ 616 (794)
|.+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 209 G~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 209 GVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999876 37899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=382.56 Aligned_cols=264 Identities=24% Similarity=0.320 Sum_probs=189.6
Q ss_pred CceEEEEecCCCCCCCCCCcCCCCCCCCCccccccc---cCCC-ccccccccccceeeccccc-cc-c--cCCC------
Q 038881 166 EDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICE---NDKD-AKFLCNRKLIGARYFNKGY-AA-A--VGPL------ 231 (794)
Q Consensus 166 ~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~---~g~~-~~~~~n~ki~g~~~~~~~~-~~-~--~~~~------ 231 (794)
++|+|||||||||++||+|++. .|....+ .|.+ ....+-.+ +++++|...+ .. . ..+.
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd-~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDD-VNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCcccc-ccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999864 3322211 1111 11111111 3445554321 00 0 0000
Q ss_pred --CCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC
Q 038881 232 --NSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD 309 (794)
Q Consensus 232 --~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~ 309 (794)
+.+...+.+..+|||||||||++...+ +..+.||||+|+|+.+|++... .....++++||+||++.
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n--------~~g~~GvAp~a~i~~~k~~~~g----~~~~~~i~~Ai~~a~~~ 140 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDN--------GIGIDGVADNVKIMPLRIVPNG----DERDKDIANAIRYAVDN 140 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCC--------CCceEEECCCCEEEEEEEecCC----CcCHHHHHHHHHHHHHC
Confidence 011234456899999999999997521 1235899999999999998643 35778999999999999
Q ss_pred CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---C--------CCCCceEEeccccCCCCcc
Q 038881 310 GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV---S--------NIAPWQITVGASTMDRDFP 378 (794)
Q Consensus 310 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---~--------~~ap~vitVgAs~~~~~~~ 378 (794)
|++|||||||.... .....+..++..+.++|+++|+||||+|...... + ...+++|+|||++...
T Consensus 141 g~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--- 216 (291)
T cd07483 141 GAKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--- 216 (291)
T ss_pred CCcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---
Confidence 99999999997632 2234567777889999999999999998643211 1 1235677777653321
Q ss_pred ceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHH
Q 038881 379 SYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQAL 458 (794)
Q Consensus 379 ~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 458 (794)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCC
Q 038881 459 LAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVA 538 (794)
Q Consensus 459 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 538 (794)
....++.||++|+.
T Consensus 217 ---------------------------------------------------------------~~~~~~~~Sn~G~~--- 230 (291)
T cd07483 217 ---------------------------------------------------------------ENNLVANFSNYGKK--- 230 (291)
T ss_pred ---------------------------------------------------------------CcccccccCCCCCC---
Confidence 01247889999974
Q ss_pred CCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 539 PEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 539 ~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
+|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ----~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ----NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ----ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 34999999999998765 47999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=384.36 Aligned_cols=223 Identities=26% Similarity=0.313 Sum_probs=167.9
Q ss_pred CCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEcc
Q 038881 239 RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSL 318 (794)
Q Consensus 239 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~Sl 318 (794)
.|+.+|||||||||||+.. .+..+.||||+|+|+.+|+++... |..+....+++||++|++.+++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~--------~~~~~~GVAP~A~I~svkv~d~~~-gs~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP--------EEPERNGVAPGAQIVSIKIGDTRL-GSMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC--------CCCceEEecCCCeEEEEEeccCCC-CCccchHHHHHHHHHHHHcCCCEEEecC
Confidence 3678999999999999742 233468999999999999987542 2123346799999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcCC---CCCceEEeccccCCCCccceEEecCCeEEeeeec
Q 038881 319 GGGPSKFFNDSTAIGSFH-AVKHGMVVICSAGNSGPTDSTVSN---IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSL 394 (794)
Q Consensus 319 G~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~~~---~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 394 (794)
|..........+..++.+ +.++|++||+||||+|+..+++.. .++++|+|||+.........
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 987331112233334443 457899999999999988777653 36899999996432210000
Q ss_pred CCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC
Q 038881 395 SSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG 474 (794)
Q Consensus 395 ~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~ 474 (794)
| .
T Consensus 319 --------------y----------------~------------------------------------------------ 320 (412)
T cd04857 319 --------------Y----------------S------------------------------------------------ 320 (412)
T ss_pred --------------c----------------c------------------------------------------------
Confidence 0 0
Q ss_pred ccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEE
Q 038881 475 NELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 475 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
......+.++.||||||+. ++++||||+|||+.|.
T Consensus 321 -------------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~ 355 (412)
T cd04857 321 -------------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIA 355 (412)
T ss_pred -------------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEE
Confidence 0000125789999999998 9999999999999998
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccc
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LHPEWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~ 618 (794)
|.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 356 s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 356 SVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred EcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 752221 13789999999999999999999975 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=375.01 Aligned_cols=264 Identities=26% Similarity=0.335 Sum_probs=202.2
Q ss_pred ccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCC
Q 038881 157 SIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFD 236 (794)
Q Consensus 157 ~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 236 (794)
++|..+++|+||+|+|||||||++||+|.+....... ......+.+... ......
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~------------------~~~~~~~~~~~~-------~~~~~~ 55 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGY------------------DPAVNGYNFVPN-------VGDIDN 55 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCc------------------ccccCCcccccc-------cCCcCC
Confidence 4799999999999999999999999999865110000 000000011000 000123
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEE
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSV 316 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~ 316 (794)
...|..||||||||||++...+....-|.+ .+.|+||+|+|+.+|+++.. + .+....++++|+++++.+++||||
T Consensus 56 ~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~--~-~~~~~~~~~ai~~a~~~g~~Vin~ 130 (273)
T cd07485 56 DVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGR--Y-YVGDDAVAAAIVYAADNGAVILQN 130 (273)
T ss_pred CCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCC--C-CccHHHHHHHHHHHHHcCCcEEEe
Confidence 455788999999999998753222111221 34679999999999999876 2 478889999999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEE
Q 038881 317 SLGGGPSKFFNDSTAIGSFHAVKH-------GMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRY 389 (794)
Q Consensus 317 SlG~~~~~~~~~~~~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 389 (794)
|||......+...+..++..+.++ |++||+||||++......+...+++|+||+++.+
T Consensus 131 S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------------- 195 (273)
T cd07485 131 SWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------------- 195 (273)
T ss_pred cCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------------
Confidence 999874334556677777888888 9999999999998877667778999999985432
Q ss_pred eeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEec
Q 038881 390 KGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLAN 469 (794)
Q Consensus 390 ~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 469 (794)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeC
Q 038881 470 AQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549 (794)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 549 (794)
+.++.||++|+.. ||+||
T Consensus 196 ------------------------------------------------------~~~~~~S~~g~~~--------~i~ap 213 (273)
T cd07485 196 ------------------------------------------------------DNKASFSNYGRWV--------DIAAP 213 (273)
T ss_pred ------------------------------------------------------CCcCccccCCCce--------EEEeC
Confidence 3567899999987 99999
Q ss_pred Cc-eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 038881 550 GV-TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE-WSPAAIKSAIMTT 614 (794)
Q Consensus 550 G~-~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lsp~~ik~~L~~T 614 (794)
|. .|+++++.... ...+.|..++|||||||+|||++|||+|++|+ |+|+|||++|++|
T Consensus 214 G~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 214 GVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99 89888765321 11247899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=370.87 Aligned_cols=257 Identities=31% Similarity=0.462 Sum_probs=204.3
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
|+||+|+|||+|||++||+|.+... ..+.+.... .......|..+|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--------~~~~~~~d~~~H 46 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--------NGRTTPYDDNGH 46 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--------cCCCCCCCCCCc
Confidence 8999999999999999999976411 111111100 012355677899
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC----CceEEEEccCC
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD----GVDVLSVSLGG 320 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~----g~dVIN~SlG~ 320 (794)
||||||||+|..... ...+.||||+|+|+.+|+++.. + .....++++||+++++. +++|||||||.
T Consensus 47 GT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~--~-~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 47 GTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDS--G-SGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred hHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCC--C-CccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 999999999985221 3446899999999999999877 3 46788999999999998 99999999998
Q ss_pred CCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCC
Q 038881 321 GPS-KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS--TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSK 397 (794)
Q Consensus 321 ~~~-~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~ 397 (794)
... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~-------------------- 176 (264)
T cd07487 117 PPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH-------------------- 176 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC--------------------
Confidence 842 446678888999999999999999999998765 444567899999996543200
Q ss_pred CCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc
Q 038881 398 GLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477 (794)
Q Consensus 398 ~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 477 (794)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeee
Q 038881 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAY 557 (794)
Q Consensus 478 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~ 557 (794)
...++.||++||+. ++++||||+|||++|++..
T Consensus 177 ---------------------------------------------~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~ 209 (264)
T cd07487 177 ---------------------------------------------DDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCR 209 (264)
T ss_pred ---------------------------------------------CccccccccCCCCC--CCCcCCCEEccccceEecc
Confidence 02478899999998 8999999999999999986
Q ss_pred cCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 558 TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
+.... ......+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 210 ~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 210 SPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 54211 11122357899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=368.46 Aligned_cols=233 Identities=35% Similarity=0.488 Sum_probs=196.4
Q ss_pred cccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCC
Q 038881 158 IWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237 (794)
Q Consensus 158 ~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 237 (794)
+|..+++|+||+|||||+||+++||+|.++ +...+.|... ..
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~------------~~ 58 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG------------DP 58 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC------------CC
Confidence 778889999999999999999999999753 2223333321 12
Q ss_pred CCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC-----Cce
Q 038881 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD-----GVD 312 (794)
Q Consensus 238 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~-----g~d 312 (794)
..|..+|||||||||+++. .||||+|+|+.+|+++.. + ....+.++++++++++. +++
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~--~-~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCN--G-SGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCC--C-CcCHHHHHHHHHHHHhcccccCCCe
Confidence 5678899999999999864 699999999999999876 3 46788999999999987 489
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEeccccCCCCccceEEecCCeEEee
Q 038881 313 VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS-TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 313 VIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
|||||||... ...+..++.++.++|+++|+||||+|.... ..+...+++|+|||++.+
T Consensus 122 iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 122 VANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred EEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 9999999873 456777888899999999999999997663 444577999999986432
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCc
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGV 551 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 551 (794)
+.++.||++||.. ||+|||.
T Consensus 181 ----------------------------------------------------~~~~~~S~~g~~~--------~i~apG~ 200 (255)
T cd04077 181 ----------------------------------------------------DARASFSNYGSCV--------DIFAPGV 200 (255)
T ss_pred ----------------------------------------------------CCccCcccCCCCC--------cEEeCCC
Confidence 3568899999988 9999999
Q ss_pred eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcc
Q 038881 552 TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASI 617 (794)
Q Consensus 552 ~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~ 617 (794)
+|.++.... .+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 201 ~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 201 DILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999887642 1478999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=363.84 Aligned_cols=242 Identities=29% Similarity=0.399 Sum_probs=204.0
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
...+|..+ +|+||+|+|||+||+++||+|... ++...+++.+.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC-----------
Confidence 56899988 999999999999999999998432 23333344332
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVL 314 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVI 314 (794)
...+.|..+|||||||||++... ....+.|+||+|+|+.+|+++.. + .+...+++++|+++++.+++||
T Consensus 61 ~~~~~d~~~HGT~vagii~~~~~--------~~~~~~Giap~a~l~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~~~ii 129 (260)
T cd07484 61 DSDAMDDNGHGTHVAGIIAAATN--------NGTGVAGVAPKAKIMPVKVLDAN--G-SGSLADIANGIRYAADKGAKVI 129 (260)
T ss_pred CCCCCCCCCcHHHHHHHHhCccC--------CCCceEeECCCCEEEEEEEECCC--C-CcCHHHHHHHHHHHHHCCCeEE
Confidence 22356788999999999998742 12335899999999999999876 3 4678899999999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeec
Q 038881 315 SVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSL 394 (794)
Q Consensus 315 N~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 394 (794)
|||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 130 n~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------- 186 (260)
T cd07484 130 NLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------- 186 (260)
T ss_pred EecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------
Confidence 99999873 4456777778889999999999999998888888889999999985432
Q ss_pred CCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC
Q 038881 395 SSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG 474 (794)
Q Consensus 395 ~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~ 474 (794)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEE
Q 038881 475 NELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 475 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
+.++.||++|+.. |++|||.+|+
T Consensus 187 -------------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~ 209 (260)
T cd07484 187 -------------------------------------------------DKRASFSNYGKWV--------DVSAPGGGIL 209 (260)
T ss_pred -------------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcE
Confidence 3567899999887 9999999999
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccc
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 618 (794)
++.+. +.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 210 ~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 210 STTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred eecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 88765 4789999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=370.96 Aligned_cols=266 Identities=24% Similarity=0.221 Sum_probs=188.8
Q ss_pred EEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcce
Q 038881 169 IIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHT 248 (794)
Q Consensus 169 ~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThV 248 (794)
+|||||||||.+||+|.+. +.....+... .....|..||||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~~-----------~~~~~d~~gHGT~v 44 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSDE-----------PGWTADDLGHGTAV 44 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hccccccccC-----------CCCcCCCCCChHHH
Confidence 7999999999999999753 1111111110 11156899999999
Q ss_pred eecccccccccccccccCCCcccccCCCceEEEEEeecCCC-CCCCCChHHHHHHHHHhHhCC---ceEEEEccCCCCCC
Q 038881 249 LSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPV-TGNECYDADILAAFDMAIHDG---VDVLSVSLGGGPSK 324 (794)
Q Consensus 249 AGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~G~~~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~~~ 324 (794)
||||++.... .....|+||+|+|+.+|+++..+ ........++++||+|+++.+ ++|||||||.....
T Consensus 45 Agiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~ 116 (291)
T cd04847 45 AGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPI 116 (291)
T ss_pred HHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCc
Confidence 9999975421 23458999999999999998762 011356788999999999853 59999999997422
Q ss_pred CC--CCHHHHHHHH-HHhCCcEEEEecCCCCCCCCCc------------CCCCCceEEeccccCCCCccceEEecCCeEE
Q 038881 325 FF--NDSTAIGSFH-AVKHGMVVICSAGNSGPTDSTV------------SNIAPWQITVGASTMDRDFPSYVVVSNNKRY 389 (794)
Q Consensus 325 ~~--~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~------------~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 389 (794)
.. ...+..++.+ +.++|++||+||||++...... +..++++|+|||++.+.....+...
T Consensus 117 ~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~------ 190 (291)
T cd04847 117 DDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY------ 190 (291)
T ss_pred cCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc------
Confidence 11 1245555543 5689999999999999775432 2356799999998765321000000
Q ss_pred eeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEec
Q 038881 390 KGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLAN 469 (794)
Q Consensus 390 ~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 469 (794)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeC
Q 038881 470 AQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549 (794)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 549 (794)
+.......+.||+|||.. ++.+||||+||
T Consensus 191 -------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~ap 219 (291)
T cd04847 191 -------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAF 219 (291)
T ss_pred -------------------------------------------------cccccccCCCccccCCCC--CCCcCCcEEee
Confidence 000011233499999998 99999999999
Q ss_pred CceEEeeecCCCCC-----CCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 550 GVTIIAAYTEAAGP-----TNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 550 G~~I~Sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
|++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 220 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 220 GGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99998765421100 00001122358999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=359.99 Aligned_cols=253 Identities=32% Similarity=0.402 Sum_probs=188.6
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCc
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGT 246 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 246 (794)
||+|||||||||++||+|.+. +.....|..+. ........|..+|||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------~~~~~~~~d~~~HGT 47 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------RISATEVFDAGGHGT 47 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------CCCCCCCCCCCCcHH
Confidence 799999999999999999753 11222222110 001234557889999
Q ss_pred ceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCC
Q 038881 247 HTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFF 326 (794)
Q Consensus 247 hVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 326 (794)
||||||+++.. ++...||||+|+|+.+|++... + +...+++++|+++++.+++|||||||.....
T Consensus 48 ~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~--~--~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 112 (254)
T cd07490 48 HVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDG--G--GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS-- 112 (254)
T ss_pred HHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCC--C--CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--
Confidence 99999999852 3345799999999999999876 3 7889999999999999999999999987432
Q ss_pred CCHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCcee
Q 038881 327 NDSTAIGSFHAVK-HGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405 (794)
Q Consensus 327 ~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 405 (794)
.+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.....+...
T Consensus 113 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~---------------------- 170 (254)
T cd07490 113 EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF---------------------- 170 (254)
T ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC----------------------
Confidence 5566666555554 69999999999998866666788999999997653210000000
Q ss_pred ceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCccc
Q 038881 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLP 485 (794)
Q Consensus 406 plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p 485 (794)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCC
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTN 565 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 565 (794)
.......++.+|.. .....|||++|||.+|+++....
T Consensus 171 -------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~----- 207 (254)
T cd07490 171 -------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA----- 207 (254)
T ss_pred -------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC-----
Confidence 00122223334433 25668999999999999865321
Q ss_pred CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 566 EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 566 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
...+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 208 ----~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 ----NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ----CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11257899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=363.82 Aligned_cols=249 Identities=24% Similarity=0.294 Sum_probs=183.2
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
+..+|+++++|+||+||||||||+..|| |..+++. + ...+..+ .
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~------------------~~~~~~~----------~ 53 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V------------------RVVLAPG----------A 53 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c------------------eeecCCC----------C
Confidence 5689999999999999999999999998 7643210 0 0001100 0
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVL 314 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVI 314 (794)
.....|++||||||||++ .||||+|+|+.+|+++. ....+++||+||++++++||
T Consensus 54 ~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~g~dVI 108 (298)
T cd07494 54 TDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISLSPDII 108 (298)
T ss_pred CCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhcCCCEE
Confidence 124567889999999875 47899999999999753 45678999999999999999
Q ss_pred EEccCCCCCCC----------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEec
Q 038881 315 SVSLGGGPSKF----------FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVS 384 (794)
Q Consensus 315 N~SlG~~~~~~----------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~ 384 (794)
|||||...... ....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 109 n~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g------- 178 (298)
T cd07494 109 SNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG------- 178 (298)
T ss_pred EeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC-------
Confidence 99999863111 1234777888899999999999999974 457788999999997543200
Q ss_pred CCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceE
Q 038881 385 NNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVG 464 (794)
Q Consensus 385 ~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 464 (794)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCcccccc--CCCCCCCCCCcc
Q 038881 465 MVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFS--SKGPSSVAPEIL 542 (794)
Q Consensus 465 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--S~Gp~~~~~~~~ 542 (794)
.....++ ++... ..+++.
T Consensus 179 -----------------------------------------------------------~~~~~~~~~~~~s~-~~~g~~ 198 (298)
T cd07494 179 -----------------------------------------------------------ARRASSYASGFRSK-IYPGRQ 198 (298)
T ss_pred -----------------------------------------------------------cccccccccCcccc-cCCCCc
Confidence 0000111 11111 125677
Q ss_pred cCce----------------EeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHH
Q 038881 543 KPDI----------------TAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAA 606 (794)
Q Consensus 543 KPDI----------------~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ 606 (794)
|||+ +|||..|.++...... .....+.|..++|||||||||||++|||+|++|.|++++
T Consensus 199 ~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~ 273 (298)
T cd07494 199 VPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPER 273 (298)
T ss_pred cCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 7777 4799998765532110 011225799999999999999999999999999999999
Q ss_pred HHHHHHhcCcccc
Q 038881 607 IKSAIMTTASIQD 619 (794)
Q Consensus 607 ik~~L~~TA~~~~ 619 (794)
||.+|++||+++.
T Consensus 274 v~~~l~~ta~~~~ 286 (298)
T cd07494 274 ARSLLNKTARDVT 286 (298)
T ss_pred HHHHHHHhCcccC
Confidence 9999999999874
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=365.09 Aligned_cols=279 Identities=28% Similarity=0.314 Sum_probs=200.4
Q ss_pred ccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCC
Q 038881 161 KARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRD 240 (794)
Q Consensus 161 ~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d 240 (794)
++++|+||+|||||||||++||+|.+.... ......+++.....+.+ ...|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~---------------~~~~~~~~~~~~~~~~~--------------~~~d 52 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN---------------KTNLFHRKIVRYDSLSD--------------TKDD 52 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC---------------cCccCcccEEEeeccCC--------------CCCC
Confidence 578999999999999999999999764210 00111223322222211 2227
Q ss_pred CCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCC
Q 038881 241 KDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGG 320 (794)
Q Consensus 241 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~ 320 (794)
..+|||||||||+|....... ...+.||||+|+|+.+|+++... .......+..+++++.+.+++|||||||.
T Consensus 53 ~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vin~S~G~ 125 (293)
T cd04842 53 VDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSG--NLSSPPDLNKLFSPMYDAGARISSNSWGS 125 (293)
T ss_pred CCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCc--cccCCccHHHHHHHHHHhCCEEEeccCCC
Confidence 899999999999998632211 11469999999999999988762 13567789999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecC
Q 038881 321 GPSKFFNDSTAIGSFHAV-K-HGMVVICSAGNSGPTDS---TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLS 395 (794)
Q Consensus 321 ~~~~~~~~~~~~a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 395 (794)
.... .......++.++. + +|++||+||||++.... ..+...+++|+|||++.......
T Consensus 126 ~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------------- 188 (293)
T cd04842 126 PVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------------- 188 (293)
T ss_pred CCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------------
Confidence 8432 1233344444433 3 79999999999997765 45567899999999765431000
Q ss_pred CCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc
Q 038881 396 SKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN 475 (794)
Q Consensus 396 ~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~ 475 (794)
..|..
T Consensus 189 ----------------------------~~~~~----------------------------------------------- 193 (293)
T cd04842 189 ----------------------------EGGLG----------------------------------------------- 193 (293)
T ss_pred ----------------------------ccccc-----------------------------------------------
Confidence 00000
Q ss_pred cccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEe
Q 038881 476 ELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIA 555 (794)
Q Consensus 476 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~S 555 (794)
.......++.||++||+. ++++||||+|||++|++
T Consensus 194 -------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~ 228 (293)
T cd04842 194 -------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILS 228 (293)
T ss_pred -------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEe
Confidence 001135789999999988 89999999999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhcCc
Q 038881 556 AYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH-----P---EWSPAAIKSAIMTTAS 616 (794)
Q Consensus 556 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lsp~~ik~~L~~TA~ 616 (794)
+.+.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 229 ~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 229 ARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 8754200 011123578899999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=362.33 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=167.7
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH---------
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI--------- 307 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~--------- 307 (794)
...+..+|||||||||+|... ++..+.||||+|+|+.+|+++.. + ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~--------~~~~~~GvAp~a~i~~~~v~~~~--~--~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTN--------NGVGVAGVAWGARILPVRVLGKC--G--GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCC--------CCCCceeecCCCeEEEEEEecCC--C--CcHHHHHHHHHHHhccCcCCCcc
Confidence 345678999999999999852 12335899999999999999876 4 57889999999998
Q ss_pred -hCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEeccccCCCCccceEEecC
Q 038881 308 -HDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD-STVSNIAPWQITVGASTMDRDFPSYVVVSN 385 (794)
Q Consensus 308 -~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~ 385 (794)
.++++|||||||.... ....+..++..+.++|++||+||||++... ...+...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~--~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGA--CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 4578999999998732 145677888899999999999999999776 4555678899999986432
Q ss_pred CeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEE
Q 038881 386 NKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465 (794)
Q Consensus 386 ~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gv 465 (794)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCc
Q 038881 466 VLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPD 545 (794)
Q Consensus 466 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 545 (794)
+.++.||++|+.+ |
T Consensus 201 ----------------------------------------------------------~~~~~~S~~g~~v--------d 214 (285)
T cd07496 201 ----------------------------------------------------------GQRASYSNYGPAV--------D 214 (285)
T ss_pred ----------------------------------------------------------CCcccccCCCCCC--------C
Confidence 3678899999988 9
Q ss_pred eEeCCceEEeeecCCCCCC--CCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 546 ITAPGVTIIAAYTEAAGPT--NEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 546 I~APG~~I~Sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
|.|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 215 i~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 215 VSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999998876532110 00111223578899999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=354.69 Aligned_cols=249 Identities=20% Similarity=0.236 Sum_probs=177.7
Q ss_pred ccccccccC-CCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 155 SNSIWKKAR-YGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 155 ~~~~~~~g~-~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
+..+|+... .|+||+|+|||+|||.+||+|.++.. . +..+
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~--------------------------~---~~~~---------- 44 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI--------------------------T---LISG---------- 44 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc--------------------------c---ccCC----------
Confidence 568998854 59999999999999999999975411 0 0000
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceE
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dV 313 (794)
....|+++|||||||||+|.. +.+| +.||||+|+|+.+|+++ . ....+.|..|++++...++.+
T Consensus 45 --~~~~d~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~-~----~~~~~ai~~A~~~~~~~~v~~ 108 (277)
T cd04843 45 --LTDQADSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTR-V----SNTADAILDAADYLSPGDVIL 108 (277)
T ss_pred --CCCCCCCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecC-C----CCHHHHHHHHHhccCCCCEEE
Confidence 124578899999999999863 1122 48999999999999975 1 123333444444432346778
Q ss_pred EEEccCCCCCCC------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-----------C--CCCCceEEeccccCC
Q 038881 314 LSVSLGGGPSKF------FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV-----------S--NIAPWQITVGASTMD 374 (794)
Q Consensus 314 IN~SlG~~~~~~------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-----------~--~~ap~vitVgAs~~~ 374 (794)
||||||...... ....+..++.++.++|+++|+||||++...... . ...|++|+|||++.+
T Consensus 109 in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~ 188 (277)
T cd04843 109 LEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST 188 (277)
T ss_pred EEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC
Confidence 999999873211 223455677788899999999999998652111 1 123578888875432
Q ss_pred CCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHH
Q 038881 375 RDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKG 454 (794)
Q Consensus 375 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 454 (794)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (277)
T cd04843 189 T------------------------------------------------------------------------------- 189 (277)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCC
Q 038881 455 QQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGP 534 (794)
Q Consensus 455 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 534 (794)
...++.||+||+
T Consensus 190 --------------------------------------------------------------------~~~~~~fSn~G~ 201 (277)
T cd04843 190 --------------------------------------------------------------------GHTRLAFSNYGS 201 (277)
T ss_pred --------------------------------------------------------------------CCccccccCCCC
Confidence 013789999999
Q ss_pred CCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHH
Q 038881 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----L-HPEWSPAAIKS 609 (794)
Q Consensus 535 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~lsp~~ik~ 609 (794)
.. ||.|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+|+|||+
T Consensus 202 ~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~ 270 (277)
T cd04843 202 RV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRE 270 (277)
T ss_pred cc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 87 9999999999998753211 0011123457899999999999999999975 3 49999999999
Q ss_pred HHHhcCc
Q 038881 610 AIMTTAS 616 (794)
Q Consensus 610 ~L~~TA~ 616 (794)
+|++|+.
T Consensus 271 ~L~~t~~ 277 (277)
T cd04843 271 LLTATGT 277 (277)
T ss_pred HHHhcCC
Confidence 9999973
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=351.30 Aligned_cols=240 Identities=28% Similarity=0.372 Sum_probs=190.2
Q ss_pred eEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcc
Q 038881 168 TIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTH 247 (794)
Q Consensus 168 V~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGTh 247 (794)
|+|||||+|||++||+|.+. .++...+.+... .....|..+||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~------------------------~~~~~~~~~~~~-----------~~~~~~~~~HGT~ 45 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK------------------------PKLVPGWNFVSN-----------NDPTSDIDGHGTA 45 (242)
T ss_pred CEEEEecCCCCCCChhhccC------------------------cCccCCccccCC-----------CCCCCCCCCCHHH
Confidence 68999999999999999753 011111222211 1245678999999
Q ss_pred eeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCC-CCC
Q 038881 248 TLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPS-KFF 326 (794)
Q Consensus 248 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-~~~ 326 (794)
|||||+|+.. ....+.||||+|+|+.+|+++.. + .+...++.++++++++.+++|||||||.... ...
T Consensus 46 vAgiiag~~~--------~~~~~~Gvap~a~i~~~~~~~~~--~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 46 CAGVAAAVGN--------NGLGVAGVAPGAKLMPVRIADSL--G-YAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred HHHHHHhccC--------CCceeEeECCCCEEEEEEEECCC--C-CccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 9999998752 12345899999999999999876 3 4688999999999999999999999998732 233
Q ss_pred CCHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCcee
Q 038881 327 NDSTAIGSFHAVK-HGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405 (794)
Q Consensus 327 ~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 405 (794)
...+..++..+.+ +|++||+||||+|......+...+++|+|||++..
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------- 163 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------- 163 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------
Confidence 4567777777888 99999999999998877667788999999986432
Q ss_pred ceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCccc
Q 038881 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLP 485 (794)
Q Consensus 406 plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p 485 (794)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCC
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTN 565 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 565 (794)
+.+++||++||.. |++|||.++.+.......
T Consensus 164 --------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~--- 194 (242)
T cd07498 164 --------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS--- 194 (242)
T ss_pred --------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc---
Confidence 3568899999988 999999999887544211
Q ss_pred CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 566 EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 566 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
......+.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 195 -~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 195 -AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred -cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111223578899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=360.55 Aligned_cols=265 Identities=25% Similarity=0.307 Sum_probs=184.7
Q ss_pred cccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCC
Q 038881 160 KKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPR 239 (794)
Q Consensus 160 ~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 239 (794)
..+++|+||+|||||+|||++||+|.+. .+...+|.+. ....
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~--------------------------~~~~~~~~~~------------~~~~ 43 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGR--------------------------DITTKSFVGG------------EDVQ 43 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCC--------------------------cccCcccCCC------------CCCC
Confidence 3578999999999999999999999754 1112233321 1356
Q ss_pred CCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccC
Q 038881 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLG 319 (794)
Q Consensus 240 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG 319 (794)
|..||||||||||+|+.. ++...||||+|+|+.+|++.... .+....+++||+|+++.+++|||||||
T Consensus 44 d~~gHGT~VAgiiag~~~---------~~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 44 DGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCcHHHHHHHHhcccC---------CCcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 789999999999999752 23347999999999999987663 366777999999999999999999999
Q ss_pred CCCCCC----------CCCHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcCC-----CCCceEEec
Q 038881 320 GGPSKF----------FNDSTAIGSFHA---------------VKHGMVVICSAGNSGPTDSTVSN-----IAPWQITVG 369 (794)
Q Consensus 320 ~~~~~~----------~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~~~~~~-----~ap~vitVg 369 (794)
...... ....+......+ .++|++||+||||++........ ..+++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 863111 111222222233 68999999999999865432221 122333333
Q ss_pred cccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCch
Q 038881 370 ASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNA 449 (794)
Q Consensus 370 As~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 449 (794)
+....
T Consensus 192 ~V~~~--------------------------------------------------------------------------- 196 (297)
T cd07480 192 AVGAL--------------------------------------------------------------------------- 196 (297)
T ss_pred EECCC---------------------------------------------------------------------------
Confidence 32211
Q ss_pred hhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccc
Q 038881 450 RIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAF 529 (794)
Q Consensus 450 ~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 529 (794)
+....|
T Consensus 197 --------------------------------------------------------------------------~~~~~~ 202 (297)
T cd07480 197 --------------------------------------------------------------------------GRTGNF 202 (297)
T ss_pred --------------------------------------------------------------------------CCCCCc
Confidence 111222
Q ss_pred cCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 038881 530 SSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKS 609 (794)
Q Consensus 530 SS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 609 (794)
+++.+ ....||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.
T Consensus 203 ~~~~~----~~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~ 265 (297)
T cd07480 203 SAVAN----FSNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAA 265 (297)
T ss_pred cccCC----CCCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHH
Confidence 22222 223577999999999998876 4899999999999999999999999999999988888
Q ss_pred HHHhcCccccCCCcccccCCCCCCCCCcccccccccc
Q 038881 610 AIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPN 646 (794)
Q Consensus 610 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 646 (794)
+|+.......... .........+|+|++++.
T Consensus 266 ~l~~~l~~~~~~~------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 266 LLQARLTAARTTQ------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHhhcccCC------CCCCCChhhcCCceeecC
Confidence 8874322210000 011335668999998875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=351.26 Aligned_cols=367 Identities=23% Similarity=0.339 Sum_probs=279.9
Q ss_pred hccccccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCc------ceEEEecceeeeEEEEeCH--
Q 038881 42 LSFLFSMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPED------AIFYSYTRHINGFAAKLDD-- 113 (794)
Q Consensus 42 ~~~~~~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~y~~~~ng~s~~~~~-- 113 (794)
.++..++++.+|||.|+..... ..|+..+++.+....-..- .....|...|.-+-++-..
T Consensus 41 ~~f~~tvve~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~ 108 (1033)
T KOG4266|consen 41 NPFNVTVVESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKE 108 (1033)
T ss_pred CccceeeecceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCcc
Confidence 4556678999999999998654 5677778777764332222 2234555566666555432
Q ss_pred ---HHHHHHHcCCCeEEEEecceeccccc------------CCcccc-cc---------------ccC---------CCc
Q 038881 114 ---AVAAEIAKHPKVVSVFLNQGRKLHTT------------HSWEFL-GL---------------ERN---------GRV 153 (794)
Q Consensus 114 ---~~i~~L~~~p~V~~v~~~~~~~~~~~------------~s~~~~-gl---------------~~~---------~~~ 153 (794)
-+|+.|..+|.|+.|.|.+.+..-.. ..-.++ |. ++. +..
T Consensus 109 ~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l 188 (1033)
T KOG4266|consen 109 AVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSML 188 (1033)
T ss_pred chhheeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHh
Confidence 35899999999999999876632100 000000 00 000 011
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
.++.+|+.|++|++|+|||.|||+.-+||.|+. +..-.++++.
T Consensus 189 ~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrn---------------------------vKERTNWTNE---------- 231 (1033)
T KOG4266|consen 189 GADHLWKKGYTGAKVKVAIFDTGLRADHPHFRN---------------------------VKERTNWTNE---------- 231 (1033)
T ss_pred chhhHHhccccCCceEEEEeecccccCCccccc---------------------------hhhhcCCcCc----------
Confidence 468899999999999999999999999999963 1111122221
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceE
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dV 313 (794)
..-.|..||||.|||+|||.. ...|.||+++|+++|||.+.. -...+.+++|++||+..+.||
T Consensus 232 --~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidv 294 (1033)
T KOG4266|consen 232 --DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDV 294 (1033)
T ss_pred --cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcce
Confidence 245578999999999999873 347899999999999998763 367899999999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCC--ceEEeccccCCCCccceEEecCCeEEee
Q 038881 314 LSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAP--WQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 314 IN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap--~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
+|+|+|++ ++++.|+-.-+......+|++|-|+||+||-.++..+++. .||.||..+.
T Consensus 295 LNLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf------------------ 354 (1033)
T KOG4266|consen 295 LNLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF------------------ 354 (1033)
T ss_pred EeeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc------------------
Confidence 99999998 5788888888888999999999999999999998887653 5666664221
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCC----CCCcccCceE
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV----APEILKPDIT 547 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~ 547 (794)
.+.+|.|||||-+.+ ..||+||||+
T Consensus 355 ---------------------------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiV 383 (1033)
T KOG4266|consen 355 ---------------------------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIV 383 (1033)
T ss_pred ---------------------------------------------------cchhhhhccCCcceeecCCcccccCCceE
Confidence 368999999997653 5799999999
Q ss_pred eCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccccCCCc
Q 038881 548 APGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LHPEWSPAAIKSAIMTTASIQDNNKG 623 (794)
Q Consensus 548 APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~ 623 (794)
+-|.+|...-.. .+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++..
T Consensus 384 tYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-- 448 (1033)
T KOG4266|consen 384 TYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-- 448 (1033)
T ss_pred eeccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC--
Confidence 999998865443 3778999999999999999999976 234468999999999999998543
Q ss_pred ccccCCCCCCCCCcccccccccccccC
Q 038881 624 QILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 624 ~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
.-++||+|++|+.++.+
T Consensus 449 ----------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 449 ----------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred ----------chhhccCcchhHHHHHH
Confidence 24789999999999886
|
|
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=343.32 Aligned_cols=227 Identities=32% Similarity=0.471 Sum_probs=188.4
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCc
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGT 246 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 246 (794)
||+|||||+||+++||+|.+. +...++|... ......|..+|||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~----------~~~~~~~~~~HGT 44 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGD----------DNNDYQDGNGHGT 44 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCC----------CCCCCCCCCCCHH
Confidence 799999999999999999753 2222333321 0124567889999
Q ss_pred ceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCC
Q 038881 247 HTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFF 326 (794)
Q Consensus 247 hVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 326 (794)
||||||++... ...+.|+||+|+|+.+|+++.. + .+...+++++++++++.+++|||||||... .
T Consensus 45 ~vA~ii~~~~~---------~~~~~giap~a~i~~~~~~~~~--~-~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~ 109 (229)
T cd07477 45 HVAGIIAALDN---------GVGVVGVAPEADLYAVKVLNDD--G-SGTYSDIIAGIEWAIENGMDIINMSLGGPS---D 109 (229)
T ss_pred HHHHHHhcccC---------CCccEeeCCCCEEEEEEEECCC--C-CcCHHHHHHHHHHHHHCCCCEEEECCccCC---C
Confidence 99999999752 2245899999999999999876 3 456789999999999999999999999862 3
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCce
Q 038881 327 NDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV--SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKL 404 (794)
Q Consensus 327 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 404 (794)
...+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------ 159 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------ 159 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------
Confidence 44566777788999999999999999776664 6678999999986532
Q ss_pred eceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcc
Q 038881 405 FPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLL 484 (794)
Q Consensus 405 ~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~ 484 (794)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCC
Q 038881 485 PASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPT 564 (794)
Q Consensus 485 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~ 564 (794)
+.++.||++|+.. |+.|||.+|+++++.
T Consensus 160 ---------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~----- 187 (229)
T cd07477 160 ---------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN----- 187 (229)
T ss_pred ---------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-----
Confidence 3566899999977 999999999998876
Q ss_pred CCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 565 NEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 565 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 --------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 --------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred --------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 378899999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=346.63 Aligned_cols=249 Identities=28% Similarity=0.399 Sum_probs=190.5
Q ss_pred CceEEEEecCCCCCCCCCCcCCCCCCCCCcccc---ccccCCCccccccccccceeeccccc-ccccCCCCCCCCCCCCC
Q 038881 166 EDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKG---ICENDKDAKFLCNRKLIGARYFNKGY-AAAVGPLNSSFDTPRDK 241 (794)
Q Consensus 166 ~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g---~~~~g~~~~~~~n~ki~g~~~~~~~~-~~~~~~~~~~~~~~~d~ 241 (794)
+||+|||||||||++||+|.++ .|.. .+..+.+ .. ...|.+.. .. .......++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~---~~~~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGID--DD-------GNGYVDDIYGW---NFVNNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcc--cC-------CCCcccCCCcc---cccCCCCCCCCC
Confidence 6899999999999999999864 2221 1111111 00 00111110 00 000113456788
Q ss_pred CCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 242 DGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 242 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
.+|||||||||+|... ....+.||||+|+|+.+|++... + .++..+++++|+++++.+++|||+|||..
T Consensus 63 ~~HGT~va~ii~~~~~--------~~~~~~GvAp~a~l~~~~~~~~~--~-~~~~~~~~~a~~~a~~~~~~vin~S~G~~ 131 (259)
T cd07473 63 NGHGTHVAGIIGAVGN--------NGIGIAGVAWNVKIMPLKFLGAD--G-SGTTSDAIKAIDYAVDMGAKIINNSWGGG 131 (259)
T ss_pred CCcHHHHHHHHHCcCC--------CCCceEEeCCCCEEEEEEEeCCC--C-CcCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 9999999999998752 22335899999999999999876 3 47889999999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCC--CCCceEEeccccCCCCccceEEecCCeEEeeeecCC
Q 038881 322 PSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD---STVSN--IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSS 396 (794)
Q Consensus 322 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 396 (794)
. ....+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.+
T Consensus 132 ~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~---------------------- 186 (259)
T cd07473 132 G---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN---------------------- 186 (259)
T ss_pred C---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC----------------------
Confidence 3 256777888889999999999999998762 23333 35789999985432
Q ss_pred CCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc
Q 038881 397 KGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE 476 (794)
Q Consensus 397 ~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 476 (794)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEee
Q 038881 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAA 556 (794)
Q Consensus 477 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa 556 (794)
+.++.||++||. +||+.|||.++++.
T Consensus 187 -----------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~ 212 (259)
T cd07473 187 -----------------------------------------------DALASFSNYGKK-------TVDLAAPGVDILST 212 (259)
T ss_pred -----------------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEec
Confidence 356679999985 35999999999996
Q ss_pred ecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 557 YTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
.+. +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 213 ~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 213 SPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 654 47899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=342.79 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=120.5
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
+++|+|||||||||++||+|.++ ++..+.|.... +..+.......|..||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~----~~~~~~~~~~~d~~gH 51 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYE----GDGNKVSPYYVSADGH 51 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCC----CCcccCCCCCCCCCCc
Confidence 78999999999999999999753 22223333210 0000001123578899
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCC---CCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG---NECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G---~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
||||||||+ |+||+|+|+.+|+++....+ ..++...+++||+||+++|+||||||||..
T Consensus 52 GT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~ 113 (247)
T cd07491 52 GTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIK 113 (247)
T ss_pred HHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecc
Confidence 999999996 56999999999999865311 135678899999999999999999999987
Q ss_pred CCCC---CCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcC--CCCCceEEeccccC
Q 038881 322 PSKF---FNDSTAIGSFHAVKHGMVVICSAGNSGPTDS-TVS--NIAPWQITVGASTM 373 (794)
Q Consensus 322 ~~~~---~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~--~~ap~vitVgAs~~ 373 (794)
.... ....+..++.+|.++|++||+||||+|.... .++ ...|++|+|||++.
T Consensus 114 ~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 114 KPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred cccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 3211 2566888888999999999999999997764 333 45689999999654
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=352.32 Aligned_cols=249 Identities=19% Similarity=0.224 Sum_probs=183.1
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
+...+|+.+++|+||+|+|||||||++||+|.++... ...++|.... .
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~----~---- 74 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDND----P---- 74 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCC----C----
Confidence 3678999999999999999999999999999754110 0122232210 0
Q ss_pred CCCCC--CCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCc
Q 038881 234 SFDTP--RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGV 311 (794)
Q Consensus 234 ~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~ 311 (794)
...+ .|..||||||||||+|.... .....||||+|+|+.+|+++.. .....+..++.++.+ .+
T Consensus 75 -~~~~~~~~~~gHGT~vAgiiag~~~~--------~~~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~ 139 (297)
T cd04059 75 -DPTPRYDDDNSHGTRCAGEIAAVGNN--------GICGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNPD-YI 139 (297)
T ss_pred -CCCCccccccccCcceeeEEEeecCC--------CcccccccccceEeEEEecCCc-----cccHHHHHHHhcccC-Cc
Confidence 1112 27889999999999998521 1134899999999999998754 344556666666554 46
Q ss_pred eEEEEccCCCCCCC----CCCHHHHHHHHHHh-----CCcEEEEecCCCCCCCC--CcC--CCCCceEEeccccCCCCcc
Q 038881 312 DVLSVSLGGGPSKF----FNDSTAIGSFHAVK-----HGMVVICSAGNSGPTDS--TVS--NIAPWQITVGASTMDRDFP 378 (794)
Q Consensus 312 dVIN~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~--~~~--~~ap~vitVgAs~~~~~~~ 378 (794)
+|||||||...... .......++.++.+ +|++||+||||+|.... ... ...|++|+|||++.+
T Consensus 140 ~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---- 215 (297)
T cd04059 140 DIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---- 215 (297)
T ss_pred eEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC----
Confidence 99999999873211 22234444445443 69999999999997322 222 356889999986432
Q ss_pred ceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHH
Q 038881 379 SYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQAL 458 (794)
Q Consensus 379 ~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 458 (794)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCC
Q 038881 459 LAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVA 538 (794)
Q Consensus 459 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 538 (794)
+.++.||++|+..
T Consensus 216 -----------------------------------------------------------------g~~~~~s~~g~~~-- 228 (297)
T cd04059 216 -----------------------------------------------------------------GVRASYSEVGSSV-- 228 (297)
T ss_pred -----------------------------------------------------------------CCCcCCCCCCCcE--
Confidence 4677899999988
Q ss_pred CCcccCceEeCCce-------EEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 038881 539 PEILKPDITAPGVT-------IIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAI 611 (794)
Q Consensus 539 ~~~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L 611 (794)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|
T Consensus 229 ------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L 292 (297)
T cd04059 229 ------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHIL 292 (297)
T ss_pred ------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHH
Confidence 99999987 66555431 01367889999999999999999999999999999999999
Q ss_pred HhcCc
Q 038881 612 MTTAS 616 (794)
Q Consensus 612 ~~TA~ 616 (794)
++||+
T Consensus 293 ~~TA~ 297 (297)
T cd04059 293 ALTAR 297 (297)
T ss_pred HHhcC
Confidence 99985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=352.42 Aligned_cols=274 Identities=31% Similarity=0.476 Sum_probs=208.1
Q ss_pred EEEEecCCCCCCCCCCc-CCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcc
Q 038881 169 IIGNLDTGVWPESKSFS-DEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTH 247 (794)
Q Consensus 169 ~VaVIDTGId~~Hp~f~-~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGTh 247 (794)
+|||||||||++||+|. ++ ....++.+.+.|.++. .......|..+||||
T Consensus 1 ~V~viDtGid~~h~~~~~~~---------------------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~HGT~ 51 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN---------------------FIWSKVPGGYNFVDGN--------PNPSPSDDDNGHGTH 51 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT---------------------EEEEEEEEEEETTTTB--------STTTSSSTSSSHHHH
T ss_pred CEEEEcCCcCCCChhHccCC---------------------cccccccceeeccCCC--------CCcCccccCCCccch
Confidence 69999999999999997 32 0112233344454331 112356678899999
Q ss_pred eeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH-hCCceEEEEccCCCC---C
Q 038881 248 TLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI-HDGVDVLSVSLGGGP---S 323 (794)
Q Consensus 248 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~---~ 323 (794)
|||||++.. . . ......|+||+|+|+.+|+++.. + .....++++|++++ +.+++|||||||... .
T Consensus 52 va~ii~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~--~--~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~ 120 (282)
T PF00082_consen 52 VAGIIAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNS--G--GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPD 120 (282)
T ss_dssp HHHHHHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTT--S--EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSH
T ss_pred hhhhccccc-c-c-----ccccccccccccccccccccccc--c--cccccccchhhhhhhccCCccccccccccccccc
Confidence 999999985 2 1 22344899999999999998765 3 67888999999999 899999999999831 1
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCC
Q 038881 324 KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST---VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLP 400 (794)
Q Consensus 324 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 400 (794)
....+.+..+...+.++|+++|+||||+|..... .+...+++|+||+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------------- 174 (282)
T PF00082_consen 121 PSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------------- 174 (282)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------------
T ss_pred cccccccccccccccccCcceeeccccccccccccccccccccccccccccccc--------------------------
Confidence 1223345566668899999999999999876653 34456889999985421
Q ss_pred CCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCC
Q 038881 401 SNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLAD 480 (794)
Q Consensus 401 ~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~ 480 (794)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCC
Q 038881 481 PHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEA 560 (794)
Q Consensus 481 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~ 560 (794)
+.++.||++|+.. .++++||||+|||.+|++.++..
T Consensus 175 -------------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~ 210 (282)
T PF00082_consen 175 -------------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGS 210 (282)
T ss_dssp -------------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTT
T ss_pred -------------------------------------------ccccccccccccc-ccccccccccccccccccccccc
Confidence 3568899997543 27899999999999999888763
Q ss_pred CCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccc
Q 038881 561 AGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGA 640 (794)
Q Consensus 561 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 640 (794)
.. ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++.... ....+..|||
T Consensus 211 ~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~ 272 (282)
T PF00082_consen 211 DR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGW 272 (282)
T ss_dssp ES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTT
T ss_pred cc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccC
Confidence 21 25788999999999999999999999999999999999999999886211 2345668899
Q ss_pred cccccccccC
Q 038881 641 GHIQPNLAMD 650 (794)
Q Consensus 641 G~vn~~~Al~ 650 (794)
|+||+.+|++
T Consensus 273 G~in~~~a~~ 282 (282)
T PF00082_consen 273 GLINAEKALN 282 (282)
T ss_dssp SBE-HHHHHH
T ss_pred ChhCHHHHhC
Confidence 9999999974
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=331.34 Aligned_cols=221 Identities=23% Similarity=0.263 Sum_probs=174.1
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccc-ccccccCCCCCCCCCCCCCCCCC
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNK-GYAAAVGPLNSSFDTPRDKDGHG 245 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~-~~~~~~~~~~~~~~~~~d~~gHG 245 (794)
||+|||||||||++||+|.+.-. ..+.+.. .+ ........|..|||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------------------------~~~~~~~~~~-------~~~~~~~~d~~gHG 47 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------------------------DGEVTIDLEI-------IVVSAEGGDKDGHG 47 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------------------------cccccccccc-------ccCCCCCCCCCCcH
Confidence 79999999999999999976410 1111110 00 00123456788999
Q ss_pred cceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCC
Q 038881 246 THTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKF 325 (794)
Q Consensus 246 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 325 (794)
|||||||++. +|+++|+.+|+++.. + .+..+.+++||+|+++++++|||||||.... .
T Consensus 48 T~vAgiia~~------------------~p~~~i~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~-~ 105 (222)
T cd07492 48 TACAGIIKKY------------------APEAEIGSIKILGED--G-RCNSFVLEKALRACVENDIRIVNLSLGGPGD-R 105 (222)
T ss_pred HHHHHHHHcc------------------CCCCeEEEEEEeCCC--C-CcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC-C
Confidence 9999999864 699999999999876 3 4788999999999999999999999998732 2
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCcee
Q 038881 326 FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405 (794)
Q Consensus 326 ~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 405 (794)
....+..++.++.++|+++|+||||++.... .+...+++|+||+.+.+.
T Consensus 106 ~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------ 154 (222)
T cd07492 106 DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------ 154 (222)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------------
Confidence 2345677788888999999999999986543 256678999999753221
Q ss_pred ceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCccc
Q 038881 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLP 485 (794)
Q Consensus 406 plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p 485 (794)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCC
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTN 565 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 565 (794)
.. +.+++. +|+.|||.+|+++.+.
T Consensus 155 ---------------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~------ 178 (222)
T cd07492 155 ---------------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPH------ 178 (222)
T ss_pred ---------------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCC------
Confidence 11 112333 3999999999998776
Q ss_pred CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 566 EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 566 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 179 -------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 -------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 37899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=344.76 Aligned_cols=252 Identities=25% Similarity=0.277 Sum_probs=175.3
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc--cccccCCCCCCCCCCCCCCCC
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG--YAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~--~~~~~~~~~~~~~~~~d~~gH 244 (794)
.|+|||||||||++||+|.+.-. ...+.+... +...............|..||
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 55 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS-------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLGH 55 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc-------------------------ccccccccCCCcCCccccccCCCCcCCCCCCc
Confidence 38999999999999999985310 000011000 000000000012345678999
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCC
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSK 324 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 324 (794)
||||||+|++.. ...||||+|+|+.+|+++.. + .....+++++|++|++++++|||||||.....
T Consensus 56 GT~vAgiia~~~------------~~~GvAp~a~i~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 56 GTAVAGQIAANG------------NIKGVAPGIGIVSYRVFGSC--G-SAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred HhHHHHHHhcCC------------CCceeCCCCEEEEEEeecCC--C-CcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 999999999863 12499999999999999876 3 35788999999999999999999999986321
Q ss_pred CC--------CCHHHHHHHHHHhCCcEEEEecCCCCCCCCC----------------------cCCCCCceEEeccccCC
Q 038881 325 FF--------NDSTAIGSFHAVKHGMVVICSAGNSGPTDST----------------------VSNIAPWQITVGASTMD 374 (794)
Q Consensus 325 ~~--------~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~----------------------~~~~ap~vitVgAs~~~ 374 (794)
.. ...+..++..+.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~- 199 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN- 199 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC-
Confidence 11 1345666777889999999999999965411 1123345555554322
Q ss_pred CCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHH
Q 038881 375 RDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKG 454 (794)
Q Consensus 375 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 454 (794)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCC
Q 038881 455 QQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGP 534 (794)
Q Consensus 455 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 534 (794)
.+.++.||++|+
T Consensus 200 --------------------------------------------------------------------~~~~~~~S~~g~ 211 (294)
T cd07482 200 --------------------------------------------------------------------NGNLSSFSNYGN 211 (294)
T ss_pred --------------------------------------------------------------------CCCcCccccCCC
Confidence 246778999987
Q ss_pred CCCCCCcccCceEeCCceEEeeecCCCC---CCC------CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCH-
Q 038881 535 SSVAPEILKPDITAPGVTIIAAYTEAAG---PTN------EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP- 604 (794)
Q Consensus 535 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp- 604 (794)
.. +|++|||+++......... ... .......+.|..++|||||||+|||++|||+|++|.|++
T Consensus 212 ~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~ 284 (294)
T cd07482 212 SR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPP 284 (294)
T ss_pred Cc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcH
Confidence 54 4999999988532211100 000 001123458899999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 038881 605 AAIKSAIMTT 614 (794)
Q Consensus 605 ~~ik~~L~~T 614 (794)
.|||++|++|
T Consensus 285 ~~v~~~L~~T 294 (294)
T cd07482 285 DEAIRILYNT 294 (294)
T ss_pred HHHHHHHhhC
Confidence 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=334.06 Aligned_cols=244 Identities=25% Similarity=0.370 Sum_probs=187.1
Q ss_pred CCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCC
Q 038881 164 YGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDG 243 (794)
Q Consensus 164 ~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~g 243 (794)
+|+||+|+|||+||+++||+|.+.... ...+.... ........|..+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~-------~~~~~~~~~~~~ 47 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVN-------DAGYASNGDGDS 47 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------cccccccc-------cccCCCCCCCCC
Confidence 699999999999999999999864111 00000000 000124557889
Q ss_pred CCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCC
Q 038881 244 HGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPS 323 (794)
Q Consensus 244 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 323 (794)
|||||||||+|+.. .....|+||+|+|+.+|+++... ..+....+.++++++++.+++|||||||....
T Consensus 48 HGT~vagiiag~~~---------~~~~~GiAp~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~ 116 (267)
T cd04848 48 HGTHVAGVIAAARD---------GGGMHGVAPDATLYSARASASAG--STFSDADIAAAYDFLAASGVRIINNSWGGNPA 116 (267)
T ss_pred hHHHHHHHHhcCcC---------CCCcccCCcCCEEEEEeccCCCC--cccchHHHHHHHHHHHhCCCeEEEccCCCCCc
Confidence 99999999999852 24568999999999999998752 13677889999999999999999999999842
Q ss_pred CC------------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcC---------CCCCceEEeccccCCCCccceEE
Q 038881 324 KF------------FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVS---------NIAPWQITVGASTMDRDFPSYVV 382 (794)
Q Consensus 324 ~~------------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~---------~~ap~vitVgAs~~~~~~~~~~~ 382 (794)
.. ....+...+..+.++|++||+||||++....... ...+++|+||+++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------- 189 (267)
T cd04848 117 IDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------- 189 (267)
T ss_pred ccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------
Confidence 21 4455777778899999999999999986543332 2457899999865432
Q ss_pred ecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCc
Q 038881 383 VSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGA 462 (794)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 462 (794)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCcccc--ccCCCCCCCCCC
Q 038881 463 VGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAA--FSSKGPSSVAPE 540 (794)
Q Consensus 463 ~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~ 540 (794)
.... ||++|+..
T Consensus 190 --------------------------------------------------------------~~~~~~~s~~~~~~---- 203 (267)
T cd04848 190 --------------------------------------------------------------TIASYSYSNRCGVA---- 203 (267)
T ss_pred --------------------------------------------------------------Ccccccccccchhh----
Confidence 2222 47887643
Q ss_pred cccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 541 ILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 541 ~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
..++++|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 204 -~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 -ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 2347999999999987631 137889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=308.62 Aligned_cols=355 Identities=21% Similarity=0.261 Sum_probs=230.5
Q ss_pred CCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 242 DGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 242 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
.-|||||||||+|+..+. ....||||+|+|+.+++.+..- |..-+...+.+|+..++++.+||||||+|-.
T Consensus 310 g~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RL-gsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRL-GSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccc-cccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 459999999999996332 2457999999999999976542 2123456789999999999999999999987
Q ss_pred C-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCC---CCCceEEeccccCCCCccceEEecCCeEEeeeecCCC
Q 038881 322 P-SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN---IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSK 397 (794)
Q Consensus 322 ~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~---~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~ 397 (794)
. -+.....+..+-..+.+.|+++|.||||+||.-++++. ....+|.|||.-......+.
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~----------------- 443 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE----------------- 443 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh-----------------
Confidence 3 22233345444445668899999999999999888775 33588999984332111000
Q ss_pred CCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc
Q 038881 398 GLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477 (794)
Q Consensus 398 ~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 477 (794)
|.+.
T Consensus 444 -------y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 444 -------YSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred -------hhhh---------------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeee
Q 038881 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAY 557 (794)
Q Consensus 478 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~ 557 (794)
..-...+..||||||+. ||-+--.|.|||+.|.|--
T Consensus 448 ------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP 483 (1304)
T KOG1114|consen 448 ------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVP 483 (1304)
T ss_pred ------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCc
Confidence 00024578899999999 9999999999999987643
Q ss_pred cCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCC
Q 038881 558 TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKA 633 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 633 (794)
.-.. ..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++..
T Consensus 484 ~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------ 540 (1304)
T KOG1114|consen 484 QYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------ 540 (1304)
T ss_pred hhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------
Confidence 2211 2557899999999999999999965 567899999999999999998543
Q ss_pred CCCcccccccccccccCCCccccCCchhhhhhhhcCCCCccceEecccccccCCCCCCCCCCCCCeEEeecCC---ceEE
Q 038881 634 TPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLS---GSII 710 (794)
Q Consensus 634 ~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ps~~~~~~~---~~~~ 710 (794)
.++.||.|+|++.+|.+- |. +.--.|.-.++| +..-.| .+|... |-+.+.. .+..
T Consensus 541 d~faqG~GmlqVdkAyEy-L~-----q~~~~f~~~l~f----~~v~Vg--N~~srG----------IyLRep~~~~~p~e 598 (1304)
T KOG1114|consen 541 DSFAQGQGMLQVDKAYEY-LA-----QSDFSFPNALGF----INVNVG--NSCSRG----------IYLREPTQVCSPSE 598 (1304)
T ss_pred chhccCcceeehhHHHHH-HH-----HhhhcCCcccee----EEEeec--cccccc----------eEecCCcccCCccc
Confidence 478999999999999861 00 000111222222 011111 123221 1111110 1111
Q ss_pred EEEE----EEecCC----CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEe---
Q 038881 711 VSRT----VRNVGS----PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWAD--- 779 (794)
Q Consensus 711 ~~~t----v~n~~~----~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~--- 779 (794)
+++- +.|--. ...|.+.+.-..-..+.--|..+-+ .++.+.+.|+|+++. ...+.+++.|.--|
T Consensus 599 ~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~---l~~G~hy~eV~gyD~~~ 673 (1304)
T KOG1114|consen 599 HTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTG---LAPGVHYTEVLGYDTAN 673 (1304)
T ss_pred cceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcC---CCCCcceEEEEEeecCC
Confidence 2211 122111 1223322221111124445777766 567899999999987 55556677776543
Q ss_pred -CCccEEEeEEEEE
Q 038881 780 -DKQHQVRSPIVVN 792 (794)
Q Consensus 780 -~~~~~v~~P~~~~ 792 (794)
+.++.+|||+.|-
T Consensus 674 p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 674 PSRGPLFRIPVTVI 687 (1304)
T ss_pred cccCceEEeeeEEE
Confidence 2579999999864
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=293.09 Aligned_cols=193 Identities=23% Similarity=0.241 Sum_probs=142.7
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHh--HhCCceEE
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMA--IHDGVDVL 314 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a--~~~g~dVI 314 (794)
...|.+||||||||||||. .|++|+++|+..++... ..+.+.++++|+ .+.+++||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~-------~~~~~~~~i~~~~~~~~gv~VI 89 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK-------SNNGQWQECLEAQQNGNNVKII 89 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC-------CCCccHHHHHHHHHhcCCceEE
Confidence 3457899999999999997 35679999997666321 233456777787 56799999
Q ss_pred EEccCCCCCCC------CCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCC-----cCCCCCceEEeccccCCCCccceEE
Q 038881 315 SVSLGGGPSKF------FNDSTAIGSFHAVKH-GMVVICSAGNSGPTDST-----VSNIAPWQITVGASTMDRDFPSYVV 382 (794)
Q Consensus 315 N~SlG~~~~~~------~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~-----~~~~ap~vitVgAs~~~~~~~~~~~ 382 (794)
|||||...... ..+.+..++..+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 90 NmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------ 163 (247)
T cd07488 90 NHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------ 163 (247)
T ss_pred EeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC------
Confidence 99999873221 223466677776666 99999999999975422 2345789999999754321
Q ss_pred ecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCc
Q 038881 383 VSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGA 462 (794)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 462 (794)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCC--CCCCCCC
Q 038881 463 VGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKG--PSSVAPE 540 (794)
Q Consensus 463 ~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G--p~~~~~~ 540 (794)
....+.||++| |+. ++
T Consensus 164 ------------------------------------------------------------~~~~s~~sn~~~~~~~--~~ 181 (247)
T cd07488 164 ------------------------------------------------------------RFFASDVSNAGSEINS--YG 181 (247)
T ss_pred ------------------------------------------------------------cceecccccccCCCCC--CC
Confidence 01234556654 443 78
Q ss_pred cccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 038881 541 ILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP------AAIKSAIMTT 614 (794)
Q Consensus 541 ~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp------~~ik~~L~~T 614 (794)
..||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ .++|.+|+++
T Consensus 182 ~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 182 RRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred CceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 899999999999998 22 36889999999999999999999999887764 4567777665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=272.13 Aligned_cols=197 Identities=34% Similarity=0.486 Sum_probs=158.6
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH-hCCceEEE
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI-HDGVDVLS 315 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~-~~g~dVIN 315 (794)
...+..+||||||++|++... .....|+||+++|+.+|+..... ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~---------~~~~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASAN---------NGGGVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCC---------CCCCEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 455788999999999998852 12227999999999999988762 367889999999999 89999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CcCCCCCceEEeccccCCCCccceEEecCCeEEee
Q 038881 316 VSLGGGPSKFFNDSTAIGSFHAVKH-GMVVICSAGNSGPTDS---TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 316 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
||||..... ....+...+..+.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999998432 345577777788887 9999999999997766 4566789999999865432
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCcc-ccccCCCCCCCCCCcccCceEeCC
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIM-AAFSSKGPSSVAPEILKPDITAPG 550 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG 550 (794)
.. ..++++|+ |||+.|||
T Consensus 170 -----------------------------------------------------~~~~~~~~~~~--------~~~~~apg 188 (241)
T cd00306 170 -----------------------------------------------------TPASPSSNGGA--------GVDIAAPG 188 (241)
T ss_pred -----------------------------------------------------CccCCcCCCCC--------CceEEeCc
Confidence 11 13445554 55999999
Q ss_pred ceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 551 VTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 551 ~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
.++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 189 ~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 189 GDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999875111 12478999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=244.97 Aligned_cols=274 Identities=28% Similarity=0.406 Sum_probs=199.5
Q ss_pred ccccccc--cCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCC
Q 038881 155 SNSIWKK--ARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLN 232 (794)
Q Consensus 155 ~~~~~~~--g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~ 232 (794)
....|.. +.+|+|++|+|||+||+..||+|.+.. ...++|.+..
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~--------------------------~~~~~~~~~~-------- 174 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSA--------------------------VAGGDFVDGD-------- 174 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccc--------------------------ccccccccCC--------
Confidence 4567877 899999999999999999999997641 0112333220
Q ss_pred CCCC-CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCC-
Q 038881 233 SSFD-TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDG- 310 (794)
Q Consensus 233 ~~~~-~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g- 310 (794)
.. ...|.++|||||+|++++.... ......|+||+++++.+|++.... | .....+++++|++++..+
T Consensus 175 --~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~-g-~~~~~~~~~~i~~~~~~~~ 243 (508)
T COG1404 175 --PEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGG-G-SGELSDVAEGIEGAANLGG 243 (508)
T ss_pred --CCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCC-C-cccHHHHHHHHHHHHhcCC
Confidence 11 2468899999999999984200 123358999999999999998663 3 577888899999999999
Q ss_pred -ceEEEEccCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----cCCCC--CceEEeccccCCCCccceEE
Q 038881 311 -VDVLSVSLGGGPSKFFNDSTAIGSFHAVKHG-MVVICSAGNSGPTDST----VSNIA--PWQITVGASTMDRDFPSYVV 382 (794)
Q Consensus 311 -~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~a--p~vitVgAs~~~~~~~~~~~ 382 (794)
+++||||+|..........+..++..+...| +++|+|+||.+..... .+... +.+++||+.+.
T Consensus 244 ~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------- 314 (508)
T COG1404 244 PADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------- 314 (508)
T ss_pred CCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------
Confidence 9999999998511223445666666777777 9999999999976531 11111 35666666322
Q ss_pred ecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCc
Q 038881 383 VSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGA 462 (794)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 462 (794)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcc
Q 038881 463 VGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEIL 542 (794)
Q Consensus 463 ~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 542 (794)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------~~~~~~~s~~g~~~------ 328 (508)
T COG1404 315 ------------------------------------------------------------SDTVASFSNDGSPT------ 328 (508)
T ss_pred ------------------------------------------------------------CCccccccccCCCC------
Confidence 14678899999741
Q ss_pred cCceEeCCceEEe-----eecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCc
Q 038881 543 KPDITAPGVTIIA-----AYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHP-EWSPAAIKSAIMTTAS 616 (794)
Q Consensus 543 KPDI~APG~~I~S-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lsp~~ik~~L~~TA~ 616 (794)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|.+||+++.+| .+++.+++..+..++.
T Consensus 329 ~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
T COG1404 329 GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG 397 (508)
T ss_pred CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence 1299999999988 444421 2489999999999999999999999999 8999999999888876
Q ss_pred cccCCCcccccCCCCCCCCCcccccccccccccC
Q 038881 617 IQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
.. ........++.|..+...+..
T Consensus 398 ~~-----------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 398 LT-----------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred cc-----------cCCccccccccCccccccccc
Confidence 30 001234456666666555544
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-23 Score=208.99 Aligned_cols=173 Identities=17% Similarity=0.248 Sum_probs=112.4
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
...+|..|++|++|+++|+|.||||-|||++.+ ..-..+++|..+ .|.+.+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n------------------------ynaeasydfssn-----dpfpyp 200 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------------YNAEASYDFSSN-----DPFPYP 200 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------------cCceeecccccC-----CCCCCC
Confidence 578999999999999999999999999999742 222334455432 222211
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-CCceE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVDV 313 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-~g~dV 313 (794)
.....-.+.|||.|||-+++... ++.+| .|||.+.++..+|+++. ....++++|-...-+ ...+|
T Consensus 201 rytddwfnshgtrcagev~aard--ngicg------vgvaydskvagirmldq------pymtdlieansmghep~kihi 266 (629)
T KOG3526|consen 201 RYTDDWFNSHGTRCAGEVVAARD--NGICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGHEPSKIHI 266 (629)
T ss_pred cccchhhhccCccccceeeeecc--CCcee------eeeeeccccceeeecCC------chhhhhhhhcccCCCCceEEE
Confidence 11111268999999998887653 33455 59999999999999985 356677666433222 36789
Q ss_pred EEEccCCCCCCC-CCCH---HHHHHHHHHhC-----CcEEEEecCCCCCC-CCCcC--CCCCceEEecc
Q 038881 314 LSVSLGGGPSKF-FNDS---TAIGSFHAVKH-----GMVVICSAGNSGPT-DSTVS--NIAPWQITVGA 370 (794)
Q Consensus 314 IN~SlG~~~~~~-~~~~---~~~a~~~a~~~-----Gv~vV~AAGN~G~~-~~~~~--~~ap~vitVgA 370 (794)
.+-|||...... .+.| ..+|+.+-+++ |-++|.|.|..|.+ .|... ..+-|.|++-+
T Consensus 267 ysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 267 YSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred EecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 999999874322 2222 33333333333 56899999987743 22222 23456666654
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-17 Score=177.84 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=79.4
Q ss_pred CcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC---CceEEEEccCCCCCCC---CCCHHHHHHHHHHhCC
Q 038881 268 GTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD---GVDVLSVSLGGGPSKF---FNDSTAIGSFHAVKHG 341 (794)
Q Consensus 268 ~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~G 341 (794)
....||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||...... +.+.+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 346899999999999997532 34577788888876 9999999999973221 2355777778899999
Q ss_pred cEEEEecCCCCCCCC-----------CcCCCCCceEEeccccCCC
Q 038881 342 MVVICSAGNSGPTDS-----------TVSNIAPWQITVGASTMDR 375 (794)
Q Consensus 342 v~vV~AAGN~G~~~~-----------~~~~~ap~vitVgAs~~~~ 375 (794)
|+||+|+||+|...+ .++..+|||++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999997654 2346789999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=117.94 Aligned_cols=117 Identities=31% Similarity=0.363 Sum_probs=91.3
Q ss_pred CceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCC-
Q 038881 402 NKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLAD- 480 (794)
Q Consensus 402 ~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~- 480 (794)
....+++|. ..|...++...+++|||+||+|+.|.+.+|..+++++||.|+|++|+..........
T Consensus 25 ~~~~~lv~~-------------g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDA-------------GLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEc-------------cCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 456778873 345556666778999999999999999999999999999999999987643222211
Q ss_pred CCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCC
Q 038881 481 PHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSS 536 (794)
Q Consensus 481 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 536 (794)
...+|+++|+.++|+.|.+++++ .+++.+..+.. ..+.+.++.||||||+.
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999988 45555554444 45667899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-11 Score=111.00 Aligned_cols=123 Identities=42% Similarity=0.727 Sum_probs=98.2
Q ss_pred EEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCc-hhhhHHHHHHH
Q 038881 381 VVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDN-ARIDKGQQALL 459 (794)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~ 459 (794)
+.|+|++++.|++++...+ ..+++++..... .......|.+..+...+++||||||+|+.| .+.+|..++++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~ 74 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKA 74 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHH
Confidence 6789999999999996543 356777632211 223457899888888999999999999999 99999999999
Q ss_pred cCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEE
Q 038881 460 AGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGY 510 (794)
Q Consensus 460 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 510 (794)
+||.|+|++++.............+|++.|+.++|..|++|++++.+++++
T Consensus 75 ~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 75 AGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999999987643333333467999999999999999999998776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-09 Score=90.72 Aligned_cols=78 Identities=27% Similarity=0.347 Sum_probs=57.8
Q ss_pred cEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCC----CCCCcceEEEecceeeeEEEEeCHHHHHHHHcCCCeEE
Q 038881 52 HHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGN----DNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVS 127 (794)
Q Consensus 52 ~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~ 127 (794)
+|||+|++.... ......|.+++.+++.+. .....++.+.|...||||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 699999998543 223567777777554321 34567899999999999999999999999999999999
Q ss_pred EEecceeccc
Q 038881 128 VFLNQGRKLH 137 (794)
Q Consensus 128 v~~~~~~~~~ 137 (794)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=92.26 Aligned_cols=82 Identities=22% Similarity=0.377 Sum_probs=69.0
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc--c--CCCCcccEEEEeccchHHH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL--L--ADPHLLPASHINFTDGADL 497 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~--~--~~~~~~p~~~i~~~~g~~l 497 (794)
....|.+.++...+++|||+|++||.|+|.+|..+|+++||.++|+||+....... . .....+|+++|+..+|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 45689999988889999999999999999999999999999999999987631111 1 1345789999999999999
Q ss_pred HHHHhc
Q 038881 498 FRDVNS 503 (794)
Q Consensus 498 ~~~~~~ 503 (794)
.+.+.+
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 998864
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=95.13 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=74.0
Q ss_pred hccccCCCCC--CCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc-cc---cCCCCcccEEEEeccchH
Q 038881 422 VALLCEAGTL--DPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN-EL---LADPHLLPASHINFTDGA 495 (794)
Q Consensus 422 ~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~---~~~~~~~p~~~i~~~~g~ 495 (794)
....|.+... ++.++.|+|+|++||.|+|.+|..+|+++||.++|+||+...+. .+ ......+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3568998877 56789999999999999999999999999999999999986321 11 112347899999999999
Q ss_pred HHHHHHhcCCCcEEE
Q 038881 496 DLFRDVNSTKRPVGY 510 (794)
Q Consensus 496 ~l~~~~~~~~~~~~~ 510 (794)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999988776654
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=93.92 Aligned_cols=88 Identities=28% Similarity=0.318 Sum_probs=73.1
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc---ccC--CCCcccEEEEeccchHHH
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE---LLA--DPHLLPASHINFTDGADL 497 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 497 (794)
...|.+.++...+++|||+||+|+.|.|.+|..+++++||.++|++|+...... ... ....+|+++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 467998888888999999999999999999999999999999999998763211 111 345699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 038881 498 FRDVNSTKRPVGY 510 (794)
Q Consensus 498 ~~~~~~~~~~~~~ 510 (794)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887665543
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=90.92 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=72.6
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC-cc-c--cC----CCCcccEEEEeccch
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG-NE-L--LA----DPHLLPASHINFTDG 494 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-~~-~--~~----~~~~~p~~~i~~~~g 494 (794)
...|.+... ..+++|||+|++||.|+|.+|..+|+++||.++|+||+.... .. + .. ....+|+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 568999999999999999999999999999999999986531 11 1 11 234789999999999
Q ss_pred HHHHHHHhcCCCcEEEEE
Q 038881 495 ADLFRDVNSTKRPVGYLT 512 (794)
Q Consensus 495 ~~l~~~~~~~~~~~~~i~ 512 (794)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999888777653
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-08 Score=89.69 Aligned_cols=79 Identities=30% Similarity=0.402 Sum_probs=64.4
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCC----CccccCCCCcccEEEEeccchHHHH
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQEN----GNELLADPHLLPASHINFTDGADLF 498 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~----~~~~~~~~~~~p~~~i~~~~g~~l~ 498 (794)
...|.+..+...+++||||||+||.|+|.+|..+++++||.|+|++|.... ..........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 456777788889999999999999999999999999999999999992211 2223445678999999999999999
Q ss_pred HHH
Q 038881 499 RDV 501 (794)
Q Consensus 499 ~~~ 501 (794)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.4e-08 Score=88.78 Aligned_cols=88 Identities=25% Similarity=0.194 Sum_probs=71.3
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc----CCCCcccEEEEeccchHHH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL----ADPHLLPASHINFTDGADL 497 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 497 (794)
....|.+.... .+++|||+||+|+.|.|.+|..+++++||.|+|++|+........ .....+|+++|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45689888773 469999999999999999999999999999999999876421111 1234699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 038881 498 FRDVNSTKRPVGY 510 (794)
Q Consensus 498 ~~~~~~~~~~~~~ 510 (794)
++|++.+.+.+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999987665543
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.8e-08 Score=89.43 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=69.3
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC-----ccc--c-----CCCCcccEEEEe
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG-----NEL--L-----ADPHLLPASHIN 490 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-----~~~--~-----~~~~~~p~~~i~ 490 (794)
...|.+... +.+++|||+|++||.|+|.+|..+++++||.++|++|+.... ... . .....+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 557899999999999999999999999999999999876532 111 1 123578999999
Q ss_pred ccchHHHHHHHhcCCCcEE
Q 038881 491 FTDGADLFRDVNSTKRPVG 509 (794)
Q Consensus 491 ~~~g~~l~~~~~~~~~~~~ 509 (794)
..+|+.|++++..+.+.++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988765544
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=88.42 Aligned_cols=88 Identities=25% Similarity=0.350 Sum_probs=72.2
Q ss_pred hccccCCCC--CCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc-cc-c----CCCCcccEEEEeccc
Q 038881 422 VALLCEAGT--LDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN-EL-L----ADPHLLPASHINFTD 493 (794)
Q Consensus 422 ~~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~-~----~~~~~~p~~~i~~~~ 493 (794)
....|.++. +...+++|||+||+|+.|.+.+|..+++++||.|+|++++..... .. . .....+|++.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345698877 778899999999999999999999999999999999999876321 11 1 134579999999999
Q ss_pred hHHHHHHHhcCCCcEE
Q 038881 494 GADLFRDVNSTKRPVG 509 (794)
Q Consensus 494 g~~l~~~~~~~~~~~~ 509 (794)
|..|++++.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-07 Score=82.69 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=62.8
Q ss_pred EEeecCCceEEEEEEEEecCC-CceEEEEEeC--------CCC----------c-EEEEEccEEEEecCCcEEEEEEEEE
Q 038881 700 ITVPKLSGSIIVSRTVRNVGS-PGTYIARVRN--------PKG----------I-SVSVEPRSLKFLRVGEEKNFKVTIK 759 (794)
Q Consensus 700 ~~~~~~~~~~~~~~tv~n~~~-~~ty~~~~~~--------~~g----------~-~v~~~p~~~~~~~~~~~~~~~vt~~ 759 (794)
|++++.....++++||+|.|+ ..+|+++... ..| . .+...|.+|++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345555667899999999999 9999998651 011 1 67788899999 8999999999999
Q ss_pred Eccc-ccCCCCeEEEEEEEEeCCc-cEEEeEEE
Q 038881 760 VRKV-RAATKDYVFGDLVWADDKQ-HQVRSPIV 790 (794)
Q Consensus 760 ~~~~-~~~~~~~~~G~~~~~~~~~-~~v~~P~~ 790 (794)
+... ....+.+++|+|.++++.. +.++|||+
T Consensus 80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9552 2356899999999998655 49999995
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=87.40 Aligned_cols=86 Identities=26% Similarity=0.292 Sum_probs=69.9
Q ss_pred cccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc----ccCCCCcccEEEEeccchHHHHH
Q 038881 424 LLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE----LLADPHLLPASHINFTDGADLFR 499 (794)
Q Consensus 424 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~ 499 (794)
..|.+.++ +.+++|||+|++||.|.|.+|..+++++||.++|+||+...+.. .......+|+++|+..+|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46876655 35799999999999999999999999999999999998732211 11224569999999999999999
Q ss_pred HHhcCCCcEEE
Q 038881 500 DVNSTKRPVGY 510 (794)
Q Consensus 500 ~~~~~~~~~~~ 510 (794)
.+..+.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988776554
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=102.71 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=100.3
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
....|..+++|.++.|+|.|+|++..||+.... ....+.+++... +..+..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~-----~~~p~~ 72 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRH-----DNDPEP 72 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecC-----CCCccc
Confidence 568999999999999999999999999998642 112233333321 111101
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-CCceE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVDV 313 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-~g~dV 313 (794)
..+....+.|||-||+-.+.... . ..-..|+++++++..++++... ..+...+...... .-+++
T Consensus 73 ~~~~~~~~~~g~~Ca~~~a~~~~--~------~~C~vg~~~~~~~~g~~~l~~~-------v~~~~~~~~~~~~~~~~di 137 (431)
T KOG3525|consen 73 RCDGTNENKHGTRCAGCVAARAN--N------LTCGVGVAYNATIGGIRMLAGC-------VSDAVEAPSLGFGPCHIDI 137 (431)
T ss_pred ccCCCCccccCCCCCcccccccC--C------CcCCCCcccCccccceeeeeee-------cccceecccccCCCCCcee
Confidence 12223468899999999998741 1 1223799999999999998643 1133333332222 35789
Q ss_pred EEEccCCCCCC-CCCC---HHHHHHHH-----HHhCCcEEEEecCCCCCCCCC
Q 038881 314 LSVSLGGGPSK-FFND---STAIGSFH-----AVKHGMVVICSAGNSGPTDST 357 (794)
Q Consensus 314 IN~SlG~~~~~-~~~~---~~~~a~~~-----a~~~Gv~vV~AAGN~G~~~~~ 357 (794)
-..|||..... .... ....+... ...+|-++|+|.||.|.....
T Consensus 138 ~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~ 190 (431)
T KOG3525|consen 138 YSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDS 190 (431)
T ss_pred ecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccc
Confidence 99999987321 1111 12222222 335678999999998865433
|
|
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=88.23 Aligned_cols=84 Identities=24% Similarity=0.306 Sum_probs=68.4
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc-----C-CCCcccEEEEeccchHH
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL-----A-DPHLLPASHINFTDGAD 496 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~-----~-~~~~~p~~~i~~~~g~~ 496 (794)
...|.+.. .+++|||+|++||.|+|.+|..+++++||.++|+||+........ . ....+|+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 479999999999999999999999999999999999765321111 1 13579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 038881 497 LFRDVNSTKRPVG 509 (794)
Q Consensus 497 l~~~~~~~~~~~~ 509 (794)
|++.+..+.+.++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998776544
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=87.12 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=61.7
Q ss_pred CCCCCCccceEEEEecCCch-----hhhHHHHHHHcCceEEEEeccC--CCCc-cccCC---CCcccEEEEeccchHHHH
Q 038881 430 TLDPKKVKGKILVCLRGDNA-----RIDKGQQALLAGAVGMVLANAQ--ENGN-ELLAD---PHLLPASHINFTDGADLF 498 (794)
Q Consensus 430 ~~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~gvi~~n~~--~~~~-~~~~~---~~~~p~~~i~~~~g~~l~ 498 (794)
++...+++|||+|++||.|. |.+|.++++++||.++|+||+. +... ....+ ...+|+++|+..+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 45566899999999999999 9999999999999999999997 3211 11111 458999999999999999
Q ss_pred HHHhcC
Q 038881 499 RDVNST 504 (794)
Q Consensus 499 ~~~~~~ 504 (794)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-07 Score=85.68 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=69.0
Q ss_pred ccccCCCCCC--CC----CccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc-c----------cCCCCccc
Q 038881 423 ALLCEAGTLD--PK----KVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE-L----------LADPHLLP 485 (794)
Q Consensus 423 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~-~----------~~~~~~~p 485 (794)
...|.+.... +. ...++|+|++||.|+|.+|..+|+++||.++|+||+.+.... . ......+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678876543 22 378999999999999999999999999999999998653211 1 01223689
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEE
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGY 510 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~ 510 (794)
+++|+..+|+.|+..+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=84.90 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=68.9
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc-cCCCCcccEEEEeccchHHHHHH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL-LADPHLLPASHINFTDGADLFRD 500 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~ 500 (794)
....|.+...+..+++|||+|++||.|.|.+|..+++++||.++|+||+.+..... ..+...+|.+.+ .++|+.|++.
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~ 118 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDA 118 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHH
Confidence 34689987666668999999999999999999999999999999999987643211 122334566666 9999999999
Q ss_pred HhcCCCcEEE
Q 038881 501 VNSTKRPVGY 510 (794)
Q Consensus 501 ~~~~~~~~~~ 510 (794)
+..+.+.+++
T Consensus 119 l~~G~~vtv~ 128 (129)
T cd02124 119 LAAGSNVTVD 128 (129)
T ss_pred HhcCCeEEEe
Confidence 9887665543
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-07 Score=83.93 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=65.8
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC-c-ccc----CCCCcccEEEEeccchH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG-N-ELL----ADPHLLPASHINFTDGA 495 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-~-~~~----~~~~~~p~~~i~~~~g~ 495 (794)
....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|+||+.... . ... .....+|+++|+..+|+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35689766 5588999999999999999999999999999999999887642 1 111 22347999999999999
Q ss_pred HHHHHHhcC
Q 038881 496 DLFRDVNST 504 (794)
Q Consensus 496 ~l~~~~~~~ 504 (794)
.|+.++..+
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999877643
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.44 E-value=7e-07 Score=85.91 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=69.3
Q ss_pred ccccCCCCCCC---CCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc-cccC-----CCCcccEEEEeccc
Q 038881 423 ALLCEAGTLDP---KKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN-ELLA-----DPHLLPASHINFTD 493 (794)
Q Consensus 423 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~~~-----~~~~~p~~~i~~~~ 493 (794)
...|.+....+ .++.|+|+|++||.|+|.+|..+|+++||.++|++|+..... .... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46898777644 789999999999999999999999999999999999875421 1111 13479999999999
Q ss_pred hHHHHHHHhcCCC
Q 038881 494 GADLFRDVNSTKR 506 (794)
Q Consensus 494 g~~l~~~~~~~~~ 506 (794)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=75.28 Aligned_cols=76 Identities=29% Similarity=0.362 Sum_probs=62.2
Q ss_pred CCCCCCccceEEEEecCCc--hhhhHHHHHHHcCceEEEEeccCCCCcccc-------CCCCcccEEEEeccchHHHHHH
Q 038881 430 TLDPKKVKGKILVCLRGDN--ARIDKGQQALLAGAVGMVLANAQENGNELL-------ADPHLLPASHINFTDGADLFRD 500 (794)
Q Consensus 430 ~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~-------~~~~~~p~~~i~~~~g~~l~~~ 500 (794)
++...+++|||+|++++.+ .+.+|..++.++||.|+|++|+........ .....+|++.|+.++|+.|.+.
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 4446679999999999999 889999999999999999998765432111 1235799999999999999999
Q ss_pred HhcCC
Q 038881 501 VNSTK 505 (794)
Q Consensus 501 ~~~~~ 505 (794)
++.+.
T Consensus 117 l~~g~ 121 (127)
T cd04819 117 AERND 121 (127)
T ss_pred HhcCC
Confidence 98754
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.2e-06 Score=98.04 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred cccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCc-eEEEEccCCCC---CCC--CCCHHHHHHHHHHhCCc
Q 038881 269 TAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGV-DVLSVSLGGGP---SKF--FNDSTAIGSFHAVKHGM 342 (794)
Q Consensus 269 ~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~-dVIN~SlG~~~---~~~--~~~~~~~a~~~a~~~Gv 342 (794)
...-+||.|+|..|-.-. .....+..|+++....-+ -++-.||+... ..+ .-+.+......|..+|+
T Consensus 287 ~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGI 359 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGI 359 (1174)
T ss_pred hhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccce
Confidence 346689999999987721 233344444444333211 34445666541 111 22345555567889999
Q ss_pred EEEEecCCCCCCCCC--------cCCCCCceEEecc
Q 038881 343 VVICSAGNSGPTDST--------VSNIAPWQITVGA 370 (794)
Q Consensus 343 ~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 370 (794)
.+++|+|-+|....+ .+..+|++++||.
T Consensus 360 Ti~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 360 TIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999999865532 2347899999997
|
|
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=67.90 Aligned_cols=78 Identities=22% Similarity=0.135 Sum_probs=62.0
Q ss_pred CCCCccceEEEEecCCc------hhhhH-------HHHHHHcCceEEEEeccCC-------CCcccc-CCCCcccEEEEe
Q 038881 432 DPKKVKGKILVCLRGDN------ARIDK-------GQQALLAGAVGMVLANAQE-------NGNELL-ADPHLLPASHIN 490 (794)
Q Consensus 432 ~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~gvi~~n~~~-------~~~~~~-~~~~~~p~~~i~ 490 (794)
...+++|||||++++.| .|..| ...+.++||.++|++|... .+.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88888 6999999999999998642 222111 223569999999
Q ss_pred ccchHHHHHHHhcCCCcEE
Q 038881 491 FTDGADLFRDVNSTKRPVG 509 (794)
Q Consensus 491 ~~~g~~l~~~~~~~~~~~~ 509 (794)
.+++..|.+.++.+.....
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00054 Score=67.15 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=56.4
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCC------------------Ccccc------------C---
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQEN------------------GNELL------------A--- 479 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~------------------~~~~~------------~--- 479 (794)
..+++|||+|+++|.|.+.+|.++|+++||+|+|+|++... |..+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 46899999999999999999999999999999999998421 00000 0
Q ss_pred -CCCcccEEEEeccchHHHHHHHhc
Q 038881 480 -DPHLLPASHINFTDGADLFRDVNS 503 (794)
Q Consensus 480 -~~~~~p~~~i~~~~g~~l~~~~~~ 503 (794)
....||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 123589999999999999998854
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0033 Score=68.71 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=66.9
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCC------CccccCCCCcccEEEEeccchHHHHHHHhcCCC
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQEN------GNELLADPHLLPASHINFTDGADLFRDVNSTKR 506 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 506 (794)
...+++|++++.||.|.|.+|...++++||.++++.|+... ++........||+++|+.++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 45689999999999999999999999999999999998542 222333457899999999999999987777776
Q ss_pred cEEEEEec
Q 038881 507 PVGYLTRA 514 (794)
Q Consensus 507 ~~~~i~~~ 514 (794)
.++.+...
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 66655543
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0045 Score=58.38 Aligned_cols=63 Identities=27% Similarity=0.249 Sum_probs=49.9
Q ss_pred ceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCc------------------hhhhHHHHHHHcCceE
Q 038881 403 KLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDN------------------ARIDKGQQALLAGAVG 464 (794)
Q Consensus 403 ~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g 464 (794)
...|+|+.+... ....|...++...|++|||||+.++.| .+..|...++++||.|
T Consensus 20 ~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 456666644321 234577788888999999999999877 4778999999999999
Q ss_pred EEEeccCC
Q 038881 465 MVLANAQE 472 (794)
Q Consensus 465 vi~~n~~~ 472 (794)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0065 Score=56.92 Aligned_cols=49 Identities=33% Similarity=0.380 Sum_probs=42.8
Q ss_pred cccCCCCCCCCCccceEEEEecCCch------------hhhHHHHHHHcCceEEEEeccCC
Q 038881 424 LLCEAGTLDPKKVKGKILVCLRGDNA------------RIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 424 ~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
..|...++...+++|||||+.++.|. +..|.+++.++||.|+|++++..
T Consensus 36 ~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 36 PELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred cCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 46777788888999999999998863 67899999999999999999854
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.2 Score=44.55 Aligned_cols=81 Identities=23% Similarity=0.226 Sum_probs=62.2
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEeCCccEE
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQV 785 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~~~~~~v 785 (794)
...+.+++++|.+. ...|++.........++++|..-.+ ++|++.++.|++.... ..+ .+.+.|.++- .+..+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~---~~g-~~~~~l~i~~-e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK---PLG-DYEGSLVITT-EGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC---CCc-eEEEEEEEEE-CCeEE
Confidence 56778889999999 9999998754335567788877667 8999999999999643 333 4588888876 45689
Q ss_pred EeEEEEEe
Q 038881 786 RSPIVVNP 793 (794)
Q Consensus 786 ~~P~~~~~ 793 (794)
.+|+-++.
T Consensus 94 ~i~v~a~~ 101 (102)
T PF14874_consen 94 EIPVKAEV 101 (102)
T ss_pred EEEEEEEE
Confidence 99987764
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0098 Score=56.78 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=42.5
Q ss_pred ccccCCCCCCCCCccceEEEEecCC------------------chhhhHHHHHHHcCceEEEEeccCC
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGD------------------NARIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
...|...++...+++|||||+.++. |.+..|..++.++||.|||+|++..
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3457777777889999999998763 6678999999999999999999865
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.015 Score=54.74 Aligned_cols=39 Identities=21% Similarity=0.079 Sum_probs=36.8
Q ss_pred CCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCC
Q 038881 434 KKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 434 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
.+++|||+|++.|...+..|.++|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 679999999999999999999999999999999999854
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.019 Score=58.30 Aligned_cols=40 Identities=38% Similarity=0.421 Sum_probs=37.1
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCC
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
..+++|||||+++|.+.+.+|..+|+++||+|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5689999999999999889999999999999999999864
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.067 Score=45.11 Aligned_cols=56 Identities=29% Similarity=0.371 Sum_probs=37.8
Q ss_pred ceEEEEEEEEecCC--CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 707 GSIIVSRTVRNVGS--PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 707 ~~~~~~~tv~n~~~--~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
...+++++|+|.|. ....++++..|.|-.+...|.++.--++|++++++++|++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 57889999999997 466889999999988888888775448999999999999975
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.033 Score=51.92 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc------c----CCCCcccEEEEec
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL------L----ADPHLLPASHINF 491 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~------~----~~~~~~p~~~i~~ 491 (794)
....|.+.. +.-+..|.|.|++||+|+|..|..+++++||..+|+..+.....+. . .+...+|++++-.
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 456776542 2446788999999999999999999999999999998876543221 2 2346899999999
Q ss_pred cchHHHHHHHhcCCCcEEEEE
Q 038881 492 TDGADLFRDVNSTKRPVGYLT 512 (794)
Q Consensus 492 ~~g~~l~~~~~~~~~~~~~i~ 512 (794)
.+|..+..-++.....-+.|.
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred cceEEEehhHHHhCCccEEEe
Confidence 999877776665554444443
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.11 Score=55.99 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=63.5
Q ss_pred cccCCCCC---CCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc----CCCCcccEEEEeccchHH
Q 038881 424 LLCEAGTL---DPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL----ADPHLLPASHINFTDGAD 496 (794)
Q Consensus 424 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 496 (794)
.+|++... ........++|+.||+|+|.+|..+|+++|..++|+||+........ .....+++++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 13456788999999999999999999999999999999877553322 234678999999999999
Q ss_pred HHHHHhcC
Q 038881 497 LFRDVNST 504 (794)
Q Consensus 497 l~~~~~~~ 504 (794)
|+.|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99976443
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.7 Score=39.66 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred eEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEccc
Q 038881 708 SIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKV 763 (794)
Q Consensus 708 ~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~ 763 (794)
.-.+++++.|.+. +.+|+++++.++|+++......+++ ++|++.++.|.+.+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 3478889999999 9999999998889999654588889 79999999999999873
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.99 Score=43.52 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=34.5
Q ss_pred CCCCCCccceEEEEecCCch-------------------hhhHHHHHHHcCceEEEEeccCC
Q 038881 430 TLDPKKVKGKILVCLRGDNA-------------------RIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 430 ~~~~~~~~gkivl~~~g~~~-------------------~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
++...|++|||||+.++.-. +..|.+.+.+.||.|+|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 55678999999999875432 33599999999999999997643
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=85.55 E-value=5.4 Score=36.72 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=50.5
Q ss_pred CceEEEEEEEEecCC-CceEEEEEeC----CCC--------------------cEEEEEccEEEEecCCcEEEEEEEEEE
Q 038881 706 SGSIIVSRTVRNVGS-PGTYIARVRN----PKG--------------------ISVSVEPRSLKFLRVGEEKNFKVTIKV 760 (794)
Q Consensus 706 ~~~~~~~~tv~n~~~-~~ty~~~~~~----~~g--------------------~~v~~~p~~~~~~~~~~~~~~~vt~~~ 760 (794)
+...+++++|+|.++ ..+|.+++.. ..| --+++ |..+++ +++++++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 367899999999998 9999988632 111 01222 445888 79999999999999
Q ss_pred cccccCCCCeEEEEEEEEe
Q 038881 761 RKVRAATKDYVFGDLVWAD 779 (794)
Q Consensus 761 ~~~~~~~~~~~~G~~~~~~ 779 (794)
.. ..-.+-+-|.|.++.
T Consensus 104 P~--~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 104 PK--KAFDGIILGGIYFSE 120 (121)
T ss_pred CC--CCcCCEEEeeEEEEe
Confidence 77 445566778787764
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=84.48 E-value=15 Score=33.56 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=45.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeC---CC----CcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEE
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRN---PK----GISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWA 778 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~---~~----g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~ 778 (794)
+..+.+++|+|.++ +..+.+.+.. .. .-.+.++|..+++ ++|++++|.| +.... .+.+.-..=+|.++
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~--~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK--LPIDRESLYRLSFR 89 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG--S-SSS-EEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC--CCCCceEEEEEEEE
Confidence 34577899999998 6677777654 11 1257899999999 7999999999 76433 23443334455554
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.58 E-value=0.99 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.5
Q ss_pred ccCCCCceEEEEecCCCCCCCCCCc
Q 038881 161 KARYGEDTIIGNLDTGVWPESKSFS 185 (794)
Q Consensus 161 ~g~~G~GV~VaVIDTGId~~Hp~f~ 185 (794)
..|.|+||+|||+|||||+.-|-+.
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCce
Confidence 3679999999999999999988875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 794 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-118 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 2e-94 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 1e-11 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 6e-07 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 5e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 9e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 9e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 9e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 1e-05 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-05 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-05 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 1e-05 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-05 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 1e-05 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 1e-05 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 2e-05 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-05 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-05 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-05 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-05 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-05 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 4e-05 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 4e-05 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 6e-05 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 6e-05 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 6e-05 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 1e-04 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 2e-04 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 4e-04 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 4e-04 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 4e-04 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 4e-04 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 5e-04 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 5e-04 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 5e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 5e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 5e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 5e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 5e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 6e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 720 bits (1859), Expect = 0.0
Identities = 235/667 (35%), Positives = 350/667 (52%), Gaps = 34/667 (5%)
Query: 138 TTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWK 197
TTH+ +FL L S+ +W + G+D I+ LD+G+WPES SF D+G+ IP +WK
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 198 GICENDKDA-KFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNF 256
GIC+ +CNRKLIGA YFNKG A +N + ++ RD DGHGTH S GNF
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 257 VAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSV 316
S FG GTA+G +P+AR+A YK + + +D++AA D A+ DGVD++S+
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFN----EGTFTSDLIAAMDQAVADGVDMISI 171
Query: 317 SLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRD 376
S G + D+ +I SF A+ G++V SAGN GP +++N +PW + V + DR
Sbjct: 172 SYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRT 231
Query: 377 FPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKV 436
F + + N + +G SL + P+I + E +
Sbjct: 232 FAGTLTLGNGLKIRGWSLFP-ARAFVRDSPVIYNKTLSDCS--------SEELLSQVENP 282
Query: 437 KGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGAD 496
+ I++C + D+ + A + + E+ + P +N +G
Sbjct: 283 ENTIVICDDNGDFS-DQMRIITRARLKAAIFIS--EDPGVFRSATFPNPGVVVNKKEGKQ 339
Query: 497 LFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAA 556
+ V ++ P +T T L KPAP++AA S++GPS I KPDI APGV I+AA
Sbjct: 340 VINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAA 399
Query: 557 YTEAAGPTNEDYD-RRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTA 615
Y T+ + + SGTSM+ PH +GI +LK HPEWSP+AI+SA+MTTA
Sbjct: 400 YPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTA 459
Query: 616 SIQDNNKGQILNASSYK-ATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKT 674
DN + I ++ + K ATP GAGH+ PN A+DPGLVYD T DY+N LC+L + +
Sbjct: 460 DPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEE 519
Query: 675 QIALFSDKTYRCPEYVSTANFNYPS-ITVPKLSGSI-----IVSRTVRNVGSP-GTYIAR 727
Q + + +A+ NYPS I + + G+ RTV NVG TY A+
Sbjct: 520 QFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAK 579
Query: 728 VRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVW-ADDKQHQVR 786
++ PK ++SV P+ L F E++++ +T +R + + G + W + H VR
Sbjct: 580 LKAPKNSTISVSPQILVFKNKNEKQSYTLT--IRYIGDEGQSRNVGSITWVEQNGNHSVR 637
Query: 787 SPIVVNP 793
SPIV +P
Sbjct: 638 SPIVTSP 644
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 709 bits (1832), Expect = 0.0
Identities = 260/663 (39%), Positives = 379/663 (57%), Gaps = 51/663 (7%)
Query: 138 TTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWK 197
TT SW+FLG ++ ++++ + ++G LDTG+WPES SF DEG P P KWK
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 198 GICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFV 257
G CE + F CNRK+IGAR ++ G + G +N PRD +GHGTHT STA G V
Sbjct: 54 GTCETSNN--FRCNRKIIGARSYHIGRPISPGDVNG----PRDTNGHGTHTASTAAGGLV 107
Query: 258 AKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVS 317
++A+++GLG GTA+GG P AR+AAYKVCW + C D DILAA+D AI DGVD++S+S
Sbjct: 108 SQANLYGLGLGTARGGVPLARIAAYKVCWN----DGCSDTDILAAYDDAIADGVDIISLS 163
Query: 318 LGGG-PSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRD 376
+GG P +F D+ AIGSFHAV+ G++ SAGN GP T ++++PW ++V ASTMDR
Sbjct: 164 VGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRK 223
Query: 377 FPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKV 436
F + V + N + ++G S+++ N+ +PL+S D + C +++P +
Sbjct: 224 FVTQVQIGNGQSFQGVSINT---FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLL 280
Query: 437 KGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGAD 496
KGKI+VC L GA G+++ + AD + LP+S ++ D
Sbjct: 281 KGKIVVCEASFG---PHEFFKSLDGAAGVLMT----SNTRDYADSYPLPSSVLDPNDLLA 333
Query: 497 LFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAA 556
R + S + P + ++TT L AP++ +FSS+GP+ +++KPDI+ PGV I+AA
Sbjct: 334 TLRYIYSIRSPGATIFKSTTILN-ASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAA 392
Query: 557 YTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
+ A RR FN +SGTSMSCPH++GI +KT +P WSPAAIKSA+MTTAS
Sbjct: 393 WPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTAS 449
Query: 617 IQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQI 676
+ F+YG+GH+ P A+ PGLVYD E+DY+ FLC GYN +
Sbjct: 450 PMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAV 501
Query: 677 ALFSDKTYRCPE--YVSTANFNYPSITV---PKLSGSIIVSRTVRNVGSP-GTYIARVRN 730
+ C + NYPS + P + + +RT+ +V TY A +
Sbjct: 502 RRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISA 561
Query: 731 PKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQVRSPIV 790
P+G+++SV P L F +G+ K+F +T++ + V LVW+D H VRSPI
Sbjct: 562 PQGLTISVNPNVLSFNGLGDRKSFTLTVRG----SIKGFVVSASLVWSDGV-HYVRSPIT 616
Query: 791 VNP 793
+
Sbjct: 617 ITS 619
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 515 bits (1327), Expect = e-170
Identities = 125/662 (18%), Positives = 215/662 (32%), Gaps = 93/662 (14%)
Query: 156 NSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFL-----C 210
++ +KA G T++ +D G +++ + K E K +
Sbjct: 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV 66
Query: 211 NRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTA 270
N K+ ++K HGTH GN A
Sbjct: 67 NDKVAYYHDYSKD------------GKTAVDQEHGTHVSGILSGN----APSETKEPYRL 110
Query: 271 KGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGG--GPSKFFND 328
+G P+A++ +V G Y + A AI+ G V+++S G D
Sbjct: 111 EGAMPEAQLLLMRVEIV--NGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPD 168
Query: 329 STAIGSFHAVKHGMVVICSAGNSGPTDSTVS---NIAPWQITVGASTMDRDFPSYVVVSN 385
T +A G+ ++ SAGN P VG + S
Sbjct: 169 ETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSP 228
Query: 386 NKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLR 445
+K+ +K P++S + A D K VKGKI + R
Sbjct: 229 DKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIER 288
Query: 446 GDNARIDKGQQALLAGAVGMVLANAQENGNEL-LADPHLLPASHINFTDGADLFRDVNST 504
GD DK +A AGAVG+++ + Q+ G + L + +PA+ I+ DG L + T
Sbjct: 289 GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKT 348
Query: 505 KRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPT 564
L ++ FSS G ++ +KPDI APG I+++
Sbjct: 349 ITF----NATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANNK--- 399
Query: 565 NEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAA--------IKSAIMTTAS 616
+ LSGTSMS P V+GI+GLL+ + P K +M++A+
Sbjct: 400 ----------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 449
Query: 617 IQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQI 676
+ + +P GAG + A + +T+ D + L +
Sbjct: 450 ALYDEDEKAY------FSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKF 501
Query: 677 ALFSDKTYRCPEYVSTANFNYPSITVPKLSGSIIVSRTVRNVGSPGTYIARVRNPKGISV 736
+ ++ V S V + +
Sbjct: 502 EV--------------------TVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLY 541
Query: 737 SVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKD------YVFGDLVW--ADDKQHQVRSP 788
+ + + K V I + ++ G + + K+ + P
Sbjct: 542 ETSWQKIT-IPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIP 600
Query: 789 IV 790
+
Sbjct: 601 YI 602
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 93/458 (20%), Positives = 162/458 (35%), Gaps = 123/458 (26%)
Query: 232 NSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG 291
++ P + + HGTH T A A+ G+ G + A + KV
Sbjct: 53 TGNWYQPGNNNAHGTHVAGTIA----AIANNEGVV-GVM--PNQNANIHIVKVF------ 99
Query: 292 NEC---YDADILAAFDMAI-HDGVDVLSVSLGG-GPSKFFNDSTAIGSFHAVKHGMVVIC 346
NE Y + ++AA D + G +V+++SLGG G + + A+ + +G+++I
Sbjct: 100 NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERN--ALNT--HYNNGVLLIA 155
Query: 347 SAGNSGPTDSTVSNIA--PWQITVGASTMDRDFPSY------VVVS----------NNKR 388
+AGN+G DS+ S A ++V A + D ++ V +S
Sbjct: 156 AAGNAG--DSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGE 213
Query: 389 YKGQSLSSKGLP---------SNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGK 439
+ ++ G + S A A ++T C
Sbjct: 214 GRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMA 273
Query: 440 ILVCLR-------GDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFT 492
+CL I+ + AGA G+++ + + L +P L+ A+
Sbjct: 274 NKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN--SALPGLQNPFLVDANSDITV 331
Query: 493 DGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVT 552
P + RAT +A + G S+ ++ G
Sbjct: 332 --------------PSVSVDRATG---------LALKAKLGQST--------TVSNQG-- 358
Query: 553 IIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIM 612
N+DY +GTSM+ PHVSG+ L+ + HPE S + +++A+
Sbjct: 359 ------------NQDY-------EYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALN 399
Query: 613 TTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650
TA D L+ + G G I A
Sbjct: 400 ATA--DD------LSVAGRD---NQTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 8e-23
Identities = 70/297 (23%), Positives = 103/297 (34%), Gaps = 69/297 (23%)
Query: 102 RHINGFAAKLDDAVAAEIA-----------KHPKVVSVFLNQGRKLHTTHSWEFLGLERN 150
I A K+ IA + V + + K+ GL+ +
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETE----GLDES 122
Query: 151 -GRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFL 209
+V + ++W G IG +DTG+
Sbjct: 123 AAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG----------------------- 159
Query: 210 CNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGT 269
K+IG F +N P D +GHGTH S A G A G
Sbjct: 160 ---KVIGWVDF----------VNGKTT-PYDDNGHGTHVASIAAGTGAA-------SNGK 198
Query: 270 AKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI----HDGVDVLSVSLGGGPSKF 325
KG +P A++ KV +DI+ D A+ G+ V+++SLG S
Sbjct: 199 YKGMAPGAKLVGIKVL---NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSD 255
Query: 326 FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN--IAPWQITVGASTMDRDFPSY 380
DS + +A G+VV+ +AGNSGP TV + A ITVGA +
Sbjct: 256 GTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVITDF 312
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 2e-21
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+ FSS+GP++ LKP++ APG IIAA D + A GT+M+
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHV+GI LL HP W+P +K+A++ TA + +YGAG +
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETAD----------IVKPDEIADIAYGAGRVNA 412
Query: 646 NLAMDPGLVYDLTENDYLN 664
A LT Y++
Sbjct: 413 YKAAYYDNYAKLTFTGYVS 431
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-22
Identities = 46/229 (20%), Positives = 82/229 (35%), Gaps = 35/229 (15%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+ ++S+ P + APG I + T ++GTSM+
Sbjct: 419 VYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQ----FTMSKS-------QLMNGTSMAA 465
Query: 586 PHVSGIVGL----LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641
PHV+G V L LK + E+SP +IK AI TA+ PF+ G G
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------VDPFAQGHG 513
Query: 642 HIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCP-EYVSTANFNYPSI 700
+ A + + ++++ L F +G N + R +Y + +
Sbjct: 514 LLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYNVYIEPIFYND 573
Query: 701 TVPKLSGSIIVSRTVRNVGSP-----GTYIARVRNPKGISVSVEPRSLK 744
+ + + S G ++ + I+V V+P L+
Sbjct: 574 KEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 1e-20
Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 20/190 (10%)
Query: 223 GYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAY 282
+ V + + HGTH S A GN + G +P A++ +
Sbjct: 251 SISVNVHDEGNVLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSM 301
Query: 283 KVCWPPVTGNECYDADILAAFDMAI-----HDGVDVLSVSLGGGPSKFFNDSTAIGSFHA 337
+ + E ++ A + +DV+++S G + +
Sbjct: 302 TIGDGRLGSME-TGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEV 360
Query: 338 V-KHGMVVICSAGNSGPTDSTVSN----IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQ 392
V K+G+V + SAGN GP TV P I VGA + + +
Sbjct: 361 VNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGNVY 420
Query: 393 SLSSKGLPSN 402
+ +S+ +
Sbjct: 421 TWTSRDPCID 430
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 5e-20
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 514 ATTELGLKPAPIMAAFSSKGPSS----VAPEILKPDITAPGVTIIAAYTEAAGPTNEDYD 569
A + +A +SS+G S + +I+APG ++ + +
Sbjct: 191 ALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-----YNGG--- 242
Query: 570 RRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNAS 629
+N +SGTSM+ PHVSG+ + +P S ++S + A + + A+
Sbjct: 243 -----YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA--KSVDIKGGYGAA 295
Query: 630 SYKATPFSYGAGHIQ 644
+ G G +
Sbjct: 296 IGDDY--ASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 52/243 (21%), Positives = 79/243 (32%), Gaps = 59/243 (24%)
Query: 152 RVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCN 211
+ +N G I LDTGV +
Sbjct: 12 AIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVN------------------------- 46
Query: 212 RKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAK 271
+ + F G ++ D++GHGTH TA A G
Sbjct: 47 -NVEQCKDF-------TGATTPINNSCTDRNGHGTHVAGTAL------ADGGSDQAGIY- 91
Query: 272 GGSPKARVAAYKVCWPPVTGNE--CYDADILAAFDMAIHDGV-----DVLSVSLGGG-PS 323
G +P A + AYKV + Y DI AA A ++S+SLG +
Sbjct: 92 GVAPDADLWAYKVL-----LDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANN 146
Query: 324 KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN--IAPWQITVGASTMDRDFPSYV 381
+ A+ A G++++ +AGNSG + T+ P I V A + +Y
Sbjct: 147 SLISS--AVNY--AYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYR 202
Query: 382 VVS 384
V
Sbjct: 203 VAD 205
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 57/317 (17%), Positives = 97/317 (30%), Gaps = 87/317 (27%)
Query: 102 RHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNG--------RV 153
+ I + ++ K P V V + L SW G + RV
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 154 ESNSIWKKARYGEDTI-IGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNR 212
++ S+W I + LDTGV + +
Sbjct: 91 KAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAW---------------------- 128
Query: 213 KLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKG 272
+ G +++ D++GHGTH + T G G
Sbjct: 129 ----------CVSTLRGKVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV-G 169
Query: 273 GSPKARVAAYKVCWPPVTGNEC---YDADILAAFDMAIHD-------------------- 309
+P ++ + +V + +DI + AI
Sbjct: 170 VAPGVQIYSVRVL------DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDD 223
Query: 310 GVDVLSVSLGG-GPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITV 368
+V+S+SLGG + D I A G+V++ ++GN G + P I V
Sbjct: 224 AAEVISMSLGGPADDSYLYD--MIIQ--AYNAGIVIVAASGNEGAPSPSYPAAYPEVIAV 279
Query: 369 GASTMDRDFPSYVVVSN 385
GA + + S+ SN
Sbjct: 280 GAIDSNDNIASF---SN 293
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 47/138 (34%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+A+FS++ P +++APGV I++ Y ++ Y L GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTYP------DDSY-------ETLMGTAMAT 324
Query: 586 PHVSGIVGLLKTLH-------------PEWSPAAIKSAIMTTASIQDNNKGQILNASSYK 632
PHVSG+V L++ + + S ++ + TA +
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA-----------DDLGPT 373
Query: 633 ATPFSYGAGHIQPNLAMD 650
YG G ++ LA+
Sbjct: 374 GWDADYGYGVVRAALAVQ 391
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 6e-19
Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 50/251 (19%)
Query: 151 GRVESNSIWKKARY-GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFL 209
G V+++ G+ I+ DTG+ S ++G
Sbjct: 6 GIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSM------HEAFRG----------- 48
Query: 210 CNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGT 269
K+ + + D +GHGTH + GN KG
Sbjct: 49 ---KITALYALGRT------------NNANDTNGHGTHVAGSVLGNGST-------NKGM 86
Query: 270 AKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDS 329
A P+A + + G +++ F A G + + S G + +
Sbjct: 87 A----PQANLVFQSIM-DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTD 141
Query: 330 TAIGSFHAVKHGMVVICSAGNSGPTDSTVSN--IAPWQITVGASTMDRDFPSYVVVSNNK 387
+ + K+ M ++ +AGN GP T+S A ITVGA+ R + N
Sbjct: 142 SRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINH 201
Query: 388 RYKGQSLSSKG 398
SS+G
Sbjct: 202 VA---QFSSRG 209
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 9e-15
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 21/137 (15%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAY------TEAAGPTNEDYDRRRIPFNALS 579
+A FSS+GP+ +KPD+ APG I++A + + Y +
Sbjct: 202 VAQFSSRGPTKDG--RIKPDVMAPGTFILSARSSLAPDSSFWANHDSKY-------AYMG 252
Query: 580 GTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYG 639
GTSM+ P V+G V L+ + K +++ A I Y + G
Sbjct: 253 GTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAAD----IGLGY--PNGNQG 306
Query: 640 AGHIQPNLAMDPGLVYD 656
G + + +++ V +
Sbjct: 307 WGRVTLDKSLNVAYVNE 323
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 1e-18
Identities = 53/301 (17%), Positives = 86/301 (28%), Gaps = 67/301 (22%)
Query: 96 IFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLER-NGRVE 154
I + + + GF K+ + K P V + + + W LER
Sbjct: 111 ILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQSI-PW---NLERITPPRY 166
Query: 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKL 214
++ G + LDT + + + EG R +
Sbjct: 167 RADEYQPPDGGSLVEVYLLDTSIQSDHREI--EG-----------------------RVM 201
Query: 215 IGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGS 274
+ D HGTH G G AK
Sbjct: 202 VTDFENVPEEDGTRFH-----RQASKCDSHGTHLAGVVSGRDA----------GVAK--- 243
Query: 275 PKARVAAYKV--CWPPVTGNECYDADILAAFDMAIHD------GVDVLSVSLGGGPSKFF 326
A + + +V C + + L + G V+ + L GG S+
Sbjct: 244 -GASMRSLRVLNC-----QGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVL 297
Query: 327 NDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSN 385
N A + G+V++ +AGN S AP ITVGA+ + +
Sbjct: 298 NA--ACQR--LARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVTLGTLGT 353
Query: 386 N 386
N
Sbjct: 354 N 354
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 3e-12
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
D+ APG II A + T F + SGTS + HV+GI ++ + PE +
Sbjct: 360 DLFAPGEDIIGAS--SDCSTC---------FVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 605 AAIKSAIMTTAS 616
A ++ ++ ++
Sbjct: 409 AELRQRLIHFSA 420
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 5e-18
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
A+FSS G + ++ APG + + Y PTN + L+GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTY-----PTNT--------YATLNGTSMAS 223
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHV+G L+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLINV 269
Query: 646 NLA 648
A
Sbjct: 270 EAA 272
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 8e-17
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
D +GHGTH T G G +P + A KV +
Sbjct: 55 AYNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVL---NSSGSGS 102
Query: 296 DADILAAFDMAIHDGVDVLSVSLGGG-PSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPT 354
+ I++ + A +G+DV+++SLGG S A+ +A G+VV+ +AGNSG +
Sbjct: 103 YSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQ--AVD--NAYARGVVVVAAAGNSGNS 158
Query: 355 DSTVSNI----APWQITVGASTMDRDFPSYVVVSN 385
ST + I VGA + + S+ S+
Sbjct: 159 GSTNTIGYPAKYDSVIAVGAVDSNSNRASF---SS 190
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 7e-18
Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 31/170 (18%)
Query: 469 NAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAA 528
N + +L A + PA++ + V V L +
Sbjct: 183 NDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR----VAALAQYRKGETPVLHGGGIT 238
Query: 529 FSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHV 588
S G + V DI APG I P + SGTS + V
Sbjct: 239 GSRFGNNWV-------DIAAPGQNITFLR-----PDAK--------TGTGSGTSEATAIV 278
Query: 589 SGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQ-----ILNASSYKA 633
SG++ + + +P + +K ++ +A + + +LNA KA
Sbjct: 279 SGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKVTEGRVLNA--EKA 326
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 39/168 (23%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
HGT S G G P A +++ +V V +
Sbjct: 81 KKSEALYIHGTAMASLIASR-----------YGIY-GVYPHALISSRRVIPDGVQDSWIR 128
Query: 296 DADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFH-----AVKHGMVVICSAGN 350
+ + + ++++S G ++A + +++ + GN
Sbjct: 129 AIESIMSNVFLAPGEEKIINISGGQK-----GVASASVWTELLSRMGRNNDRLIVAAVGN 183
Query: 351 SG-----------------PTDSTVSNIAPWQITVGASTMDRDFPSYV 381
G S+V+ I V A R + V
Sbjct: 184 DGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPV 231
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 35/125 (28%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
A+FSS GP + D+ APGV+I + P N+ + A +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTL-----PGNK--------YGAYNGTSMAS 224
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHV+G L+ + HP W+ ++S++ T + F YG G I
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTT--------------TKLGDSFYYGKGLINV 270
Query: 646 NLAMD 650
A
Sbjct: 271 QAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 24/159 (15%)
Query: 232 NSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG 291
S + +D + HGTH T G G +P A + A KV
Sbjct: 52 PSETNPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVL---GAD 99
Query: 292 NECYDADILAAFDMAIHDGVDVLSVSLGG-GPSKFFNDSTAIGSFHAVKHGMVVICSAGN 350
+ I+ + AI + +DV+++SLGG S A+ AV G+VV+ +AGN
Sbjct: 100 GSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA--AVD--KAVASGVVVVAAAGN 155
Query: 351 SGPTDSTVSNI----APWQITVGASTMDRDFPSYVVVSN 385
G + S+ + P I VGA S+ S+
Sbjct: 156 EGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASF---SS 191
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 20/232 (8%)
Query: 159 WKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGAR 218
+ I +D F + + W E + + +
Sbjct: 42 HNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQG 101
Query: 219 YFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKAR 278
K A+ + + H H ST G G +P R
Sbjct: 102 LKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQ---------EHSPVF-GIAPNCR 151
Query: 279 VAAYKVCWPPVTGNE--CYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDST---AIG 333
V + ++ A D+A+ G +++ + + AI
Sbjct: 152 VINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK 211
Query: 334 SFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSN 385
+ ++++ GN+ + + P + VGA+ +D + SN
Sbjct: 212 K--CQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHF---SN 258
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 30/129 (23%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
FS+ G ++ K I APG I+ A P E+ R L+GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQ-----PCTEEPVR-------LTGTSMAA 295
Query: 586 PHVSGIVGLLKTLHPE----WSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641
P ++GI LL +L + A+++A++ TA D P G
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVV---------EEPERCLRG 346
Query: 642 HIQPNLAMD 650
+ AM
Sbjct: 347 FVNIPGAMK 355
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 35/123 (28%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
A+FS G DI APGV + + Y P + + +L+GTSM+
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTY-----PGST--------YASLNGTSMAT 218
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHV+G L+K +P WS I++ + TA + YG+G +
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTA--TSL------------GSTNLYGSGLVNA 264
Query: 646 NLA 648
A
Sbjct: 265 EAA 267
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 8e-16
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNE-- 293
+ +D +GHGTH T G G +P A + A KV G
Sbjct: 54 PSTQDGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVL-----GASGS 99
Query: 294 CYDADILAAFDMAIHDGVDVLSVSLGG-GPSKFFNDSTAIGSFHAVKHGMVVICSAGNSG 352
+ I + A ++G+ V ++SLG PS A+ A G++V+ ++GNSG
Sbjct: 100 GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ--AVN--SATSRGVLVVAASGNSG 155
Query: 353 PTDSTVSNIAPWQITVGASTMDRDFPSYVVVSN 385
+ + VGA+ + + S+ S
Sbjct: 156 AGSISYPARYANAMAVGATDQNNNRASF---SQ 185
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 54/281 (19%), Positives = 92/281 (32%), Gaps = 75/281 (26%)
Query: 119 IAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVW 178
+ K + +++ L G+E VE+ ++W+ + G IIG +DTG
Sbjct: 1 MRKFRLIPYKQVDKVSALSEV-PM---GVEI---VEAPAVWRASAKGAGQIIGVIDTGCQ 53
Query: 179 PESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTP 238
+ ++ ++IG
Sbjct: 54 VDHPDLAE--------------------------RIIGGVNL-------TTDYGGDETNF 80
Query: 239 RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNE--CYD 296
D +GHGTH T G G G +PKA + K +
Sbjct: 81 SDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKAL-----SGDGSGEM 126
Query: 297 ADILAAFDMAI------HDGVDVLSVSLGGG-PSKFFNDSTAIGSFHAVKHGMVVICSAG 349
I A A+ + + ++++SLGG S+ +D A+ AV + + V+C+AG
Sbjct: 127 GWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD--AVKY--AVSNNVSVVCAAG 182
Query: 350 NSGPTDSTVSNI-----APWQITVGASTMDRDFPSYVVVSN 385
N G + I VGA D + +N
Sbjct: 183 NEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDF---TN 220
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 26/95 (27%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
++ F++ DI APGV I + Y + Y LSGT+M+
Sbjct: 215 LSDFTNTNEE--------IDIVAPGVGIKSTYL------DSGY-------AELSGTAMAA 253
Query: 586 PHVSGIVGLLKTLHPE-----WSPAAIKSAIMTTA 615
PHV+G + L+ L + S I + ++ A
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRA 288
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 7e-16
Identities = 40/160 (25%), Positives = 58/160 (36%), Gaps = 24/160 (15%)
Query: 223 GYAAAVGPLNSSFDTPRDKDGHGTHTLST--AGGNFVAKASVFGLGKGTAKGGSPKARVA 280
GY A + GTH T A + GKG G +P A++
Sbjct: 179 GYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD----------GKGIV-GVAPGAKIM 227
Query: 281 AYKV---CWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGG-GPSKFFNDSTAIGSFH 336
+ D + A A G V++ S GG G S + A +
Sbjct: 228 PIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE--AFD--Y 283
Query: 337 AVKHGMVVICSAGNSGPTDSTVSNIA--PWQITVGASTMD 374
A++HG+V++ SAGN+ +DS A P I V A
Sbjct: 284 AMEHGVVMVVSAGNNT-SDSHHQYPAGYPGVIQVAALDYY 322
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 2e-15
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 514 ATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRI 573
A G +A FSS+ + APGVTI++ E ++
Sbjct: 318 ALDYYG--GTFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVP 367
Query: 574 P-----FNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNA 628
++ GTSM+ PHV+G+V +L P P I+ + TA
Sbjct: 368 ATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA-----------FD 416
Query: 629 SSYKATPFSYGAGHIQPNLAMD 650
+ G G ++ + A+
Sbjct: 417 FNGNGWDHDTGYGLVKLDAALQ 438
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 23/152 (15%)
Query: 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYD 296
P D + HGTH A G A G +P R+ A + +G
Sbjct: 65 DPMDLNNHGTHVAGIAAA-------ETNNATGIA-GMAPNTRILAVRALDRNGSG---TL 113
Query: 297 ADILAAFDMAIHDGVDVLSVSLGG-GPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD 355
+DI A A G +V+++SLG + + A+ +A G VV+ +AGN+G
Sbjct: 114 SDIADAIIYAADSGAEVINLSLGCDCHTTTLEN--AVN--YAWNKGSVVVAAAGNNG--S 167
Query: 356 STVSNIA--PWQITVGASTMDRDFPSYVVVSN 385
ST A I VGA S+ SN
Sbjct: 168 STTFEPASYENVIAVGAVDQYDRLASF---SN 196
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 36/125 (28%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+A+FS+ G D+ APGV I++ T Y +SGTSM+
Sbjct: 191 LASFSNYGTW--------VDVVAPGVDIVSTIT------GNRY-------AYMSGTSMAS 229
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHV+G+ LL + + I+ AI T A T + G I
Sbjct: 230 PHVAGLAALLASQGR--NNIEIRQAIEQT-------------ADKISGTGTYFKYGRINS 274
Query: 646 NLAMD 650
A+
Sbjct: 275 YNAVT 279
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNEC- 294
TP++ +GHGTH A V G A G +PKA + A +V +
Sbjct: 63 STPQNGNGHGTHCAGIAAA-------VTNNSTGIA-GTAPKASILAVRVL------DNSG 108
Query: 295 --YDADILAAFDMAIHDGVDVLSVSLGGG-PSKFFNDSTAIGSFHAVKHGMVVICSAGNS 351
+ A G V+S+SLGG + A+ +A G VV+ +AGN+
Sbjct: 109 SGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ--AVN--YAWNKGSVVVAAAGNA 164
Query: 352 GPTDSTVSNIA--PWQITVGASTMDRDFPSYVVVSN 385
G ++ + A I V ++ + + S+ S
Sbjct: 165 G--NTAPNYPAYYSNAIAVASTDQNDNKSSF---ST 195
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 36/125 (28%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
++FS+ G D+ APG +I + Y PT+ + +LSGTSM+
Sbjct: 190 KSSFSTYGSW--------VDVAAPGSSIYSTY-----PTST--------YASLSGTSMAT 228
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHV+G+ GLL + S + I++AI T A T + G +
Sbjct: 229 PHVAGVAGLLASQGR--SASNIRAAIENT-------------ADKISGTGTYWAKGRVNA 273
Query: 646 NLAMD 650
A+
Sbjct: 274 YKAVQ 278
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 48/254 (18%), Positives = 87/254 (34%), Gaps = 40/254 (15%)
Query: 146 GLERNGRVESNSIWKKARYGEDTIIGNLDTGVW--PESKSFSDEGLGPIPSKWKGICEND 203
V+++ +W G++ ++ +DTG+ + + G I + + +
Sbjct: 12 HYFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDG 71
Query: 204 KDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVF 263
+DA + A G D HG+H T V
Sbjct: 72 RDAD--------PFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAA-------VT 116
Query: 264 GLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI----------HDGVDV 313
G A G + A+V + YD+DI A + V
Sbjct: 117 NNRIGVA-GVAYGAKVVPVRAL----GRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKV 171
Query: 314 LSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIA--PWQITVGAS 371
+++SLG +N T I A + G +V+ +AGN +++ + ++VGA+
Sbjct: 172 INMSLGSDGQCSYNAQTMIDR--ATRLGALVVVAAGNEN-QNASNTWPTSCNNVLSVGAT 228
Query: 372 TMDRDFPSYVVVSN 385
T S+ SN
Sbjct: 229 TSRGIRASF---SN 239
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAY-TEAAGPTNEDYDRRRIPFNALSGTSMS 584
A+FS+ G D+ APG I++ + P ++ Y + ++GTSM+
Sbjct: 234 RASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDAY-------SFMAGTSMA 278
Query: 585 CPHVSGIVGLLK----TLHPEWSPAAIKSAIMTTA 615
PHVSG+ L+ +++ +PA +K +++T
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTT 313
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 29/135 (21%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIP---------FN 576
++ FS+ G + DI APG + + + +
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 577 ALSGTSMSCPHVSGIVGLLKT-LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATP 635
+GT+++ P VSG + L+ H E P + S
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHG------------TSKNNKPF 449
Query: 636 FSYGAGHIQPNLAMD 650
YG G + A++
Sbjct: 450 SRYGHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 41/269 (15%), Positives = 70/269 (26%), Gaps = 95/269 (35%)
Query: 159 WKKARYGEDTIIGNLDTGV-----------WPESKSFSDEGLGPIPSKWKGICENDKDAK 207
+ +T I +DTGV +SK+ G + +
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVP---------LNGFRGTEPEE- 188
Query: 208 FLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGK 267
D+ GHGT N
Sbjct: 189 ------------------------TGDVHDVNDRKGHGTMVSGQTSAN------------ 212
Query: 268 GTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFN 327
G G +P + Y+V + + A A +DG V+++S+G N
Sbjct: 213 GKLIGVAPNNKFTMYRV----FGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKN 268
Query: 328 DSTAIGSFH-------------AVKHGMVVICSAGNSGPTDSTVSNIAPWQ--------- 365
D A K +V+ +AGN G + + +
Sbjct: 269 DHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVK 328
Query: 366 ---------ITVGASTMDRDFPSYVVVSN 385
+TVG++ + + SN
Sbjct: 329 DVPASMDNVVTVGSTDQKSNLSEF---SN 354
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
++FS+ G DI APG +I +++ + TN +SGTSM+
Sbjct: 187 RSSFSNYGTCL--------DIYAPGSSITSSWYTSNSATN-----------TISGTSMAS 227
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
PHV+G+ L +P SPA + + + T A+
Sbjct: 228 PHVAGVAALYLDENPNLSPAQVTNLLKTRAT 258
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKV--CWPPVTGNE 293
D +GHGTH T GG+ G AK V +V C
Sbjct: 64 YDATDCNGHGTHVAGTIGGSTY----------GVAK----NVNVVGVRVLNC-----SGS 104
Query: 294 CYDADILAAFDMAI--HDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNS 351
++ ++A + G V ++SLGGG S+ +D A+ + AV G+ + +AGN
Sbjct: 105 GSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDD--AVNA--AVAAGITFVVAAGND 160
Query: 352 GPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSN 385
S A ITVG++T + S+ SN
Sbjct: 161 NSNACNYSPARAADAITVGSTTSNDSRSSF---SN 192
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 40/184 (21%)
Query: 223 GYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAY 282
+ G +++ D++GHGTH + T G G +P ++ +
Sbjct: 54 CVSTLRGKVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGVQIYSV 104
Query: 283 KVCWPPVTGNECYDADILAAFDMAIHD--------------------GVDVLSVSLGG-G 321
+V +G +DI + AI +V+S+SLGG
Sbjct: 105 RVLDARGSG---SYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA 161
Query: 322 PSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYV 381
+ D I A G+V++ ++GN G + P I VGA + + S+
Sbjct: 162 DDSYLYD--MIIQ--AYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF- 216
Query: 382 VVSN 385
SN
Sbjct: 217 --SN 218
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 47/138 (34%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+A+FS++ P +++APGV I++ Y P + + L GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTY-----PDDS--------YETLMGTAMAT 249
Query: 586 PHVSGIVGLLKTLH-------------PEWSPAAIKSAIMTTASIQDNNKGQILNASSYK 632
PHVSG+V L++ + + S ++ + TA +
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA-----------DDLGPT 298
Query: 633 ATPFSYGAGHIQPNLAMD 650
YG G ++ LA+
Sbjct: 299 GWDADYGYGVVRAALAVQ 316
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
A+FS+ G D+ APG +I +A+ + T L+GTSM+
Sbjct: 185 RASFSNYGSCV--------DLFAPGASIPSAWYTSDTATQ-----------TLNGTSMAT 225
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
PHV+G+ L +P +PA++ SAI+ A+
Sbjct: 226 PHVAGVAALYLEQNPSATPASVASAILNGAT 256
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 31/155 (20%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKV--CWPPVTGNE 293
+D +GHGTH T GG G AK + A +V C
Sbjct: 62 GNGQDCNGHGTHVAGTIGGVTY----------GVAK----AVNLYAVRVLDC-----NGS 102
Query: 294 CYDADILAAFDMAIHDGVD--VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNS 351
+ ++A D + V ++SLGGG S ++ A+ + ++ G+V +AGN
Sbjct: 103 GSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDN--AVKN--SIAAGVVYAVAAGND 158
Query: 352 GPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSN 385
S +TVGA+T S+ SN
Sbjct: 159 NANACNYSPARVAEALTVGATTSSDARASF---SN 190
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
D+ APG II A + T F + SGTS + HV+GI ++ + PE +
Sbjct: 208 DLFAPGEDIIGAS--SDCSTC---------FVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 605 AAIKSAIMTTAS 616
A ++ ++ ++
Sbjct: 257 AELRQRLIHFSA 268
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 35/176 (19%), Positives = 52/176 (29%), Gaps = 32/176 (18%)
Query: 220 FNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARV 279
D HGTH G G AK A +
Sbjct: 50 VTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA----------GVAK----GASM 95
Query: 280 AAYKV--CWPPVTGNECYDADILAAFDMAIHD------GVDVLSVSLGGGPSKFFNDSTA 331
+ +V C + + L + G V+ + L GG S+ N A
Sbjct: 96 RSLRVLNC-----QGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA--A 148
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSNN 386
+ G+V++ +AGN S AP ITVGA+ + + N
Sbjct: 149 CQR--LARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVTLGTLGTN 202
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 9e-13
Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 36/160 (22%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKV--CWPPVTGNE 293
T RD GHGTH T G G AK K + KV
Sbjct: 62 STARDGHGHGTHCAGTIGSKTW----------GVAK----KVSIFGVKVLDD-----SGS 102
Query: 294 CYDADILAAFDMAIHDGVD-------VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVIC 346
++I+A D D V S+SLGGG S N A G+ V
Sbjct: 103 GSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQ--AAAR--LQSSGVFVAV 158
Query: 347 SAGNSGPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSN 385
+AGN + S P TVGA+ + ++ SN
Sbjct: 159 AAGNDNRDAANTSPASEPTVCTVGATDSNDVRSTF---SN 195
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+ FS+ G DI APG +I + + N +SGTSM+
Sbjct: 190 RSTFSNYGRVV--------DIFAPGTSITSTWI------GGRT-------NTISGTSMAT 228
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
PH++G+ L L S A+ I T ++
Sbjct: 229 PHIAGLAAYLFGLEGG-SAGAMCGRIQTLST 258
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKV--CWPPVTGNE 293
D +GHGTH T GG S +G+ K + +V C
Sbjct: 62 ADSSDCNGHGTHVAGTIGG------SQYGVAK--------NVNIVGVRVLSC-----SGS 102
Query: 294 CYDADILAAFDMAI--HDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNS 351
+ +++ D G V ++SLGGG S + A+ A++ G+ + +AGNS
Sbjct: 103 GTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDS--AVQG--AIQSGVSFMLAAGNS 158
Query: 352 GPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSN 385
S P +TVG++T S+ SN
Sbjct: 159 NADACNTSPARVPSGVTVGSTTSSDSRSSF---SN 190
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 21/91 (23%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
++FS+ G D+ APG I +A+ + + +SGTSM+
Sbjct: 185 RSSFSNWGSCV--------DLFAPGSQIKSAWYDGG-------------YKTISGTSMAT 223
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
PHV+G+ L + +P + + + AS
Sbjct: 224 PHVAGVAALYLQENNGLTPLQLTGLLNSRAS 254
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 44/163 (26%), Positives = 59/163 (36%), Gaps = 36/163 (22%)
Query: 233 SSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKV--CWPPVT 290
+ + + RD +GHGTH T G G AK K ++ KV
Sbjct: 58 TYYYSSRDGNGHGTHCAGTVGSRTY----------GVAK----KTQLFGVKVLDD----- 98
Query: 291 GNECYDADILAAFDMAIHDGVD-------VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMV 343
+ I+A D D + V S+SLGGG S N A G++
Sbjct: 99 NGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNS--AAAR--LQSSGVM 154
Query: 344 VICSAGNSGPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSN 385
V +AGN+ S P TVGAS S+ SN
Sbjct: 155 VAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSF---SN 194
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
++FS+ G + DI PG I++ + ++SGTSM+
Sbjct: 189 RSSFSNYGSV-L-------DIFGPGTDILSTWI------GGST-------RSISGTSMAT 227
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
PHV+G+ L TL + A+ I TA+
Sbjct: 228 PHVAGLAAYLMTLGKT-TAASACRYIADTAN 257
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 1e-07
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 28/163 (17%)
Query: 232 NSSFDTPR-DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVT 290
N++ PR D HGT A+ G G A+++ ++
Sbjct: 87 NTNLPKPRLSDDYHGTRCAGEI-------AAKKGNNFCGV-GVGYNAKISGIRI-----L 133
Query: 291 GNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKH---------G 341
+ D A+ + D D+ S S G + A+ G
Sbjct: 134 SGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKG 192
Query: 342 MVVICSAGNSGPTDSTVSNIA----PWQITVGASTMDRDFPSY 380
+ + ++GN G + + IT+GA P Y
Sbjct: 193 AIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPY 235
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 576 NALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATP 635
N+ GTS + P +G+ LL +P + ++ + +A + N S+
Sbjct: 266 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 325
Query: 636 -FSYGAGHI 643
YG G I
Sbjct: 326 SHRYGFGKI 334
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-06
Identities = 112/732 (15%), Positives = 197/732 (26%), Gaps = 254/732 (34%)
Query: 52 HHCCQKGAHSHGPELSAVDLHRVTESHYE-------FLGSFLHGND--NPEDAIFYSYTR 102
HH H H +D E Y+ F +F+ D + +D +
Sbjct: 2 HH------HHH------MDFE-TGEHQYQYKDILSVFEDAFVDNFDCKDVQD-----MPK 43
Query: 103 HINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKA 162
I L I V + +L W
Sbjct: 44 SI------LSKEEIDHIIMSKDAV----SGTLRL---------------------FWTLL 72
Query: 163 RYGEDTIIGNLDTGVWPESKSFSDEGLGP----IPSKWKGICE--NDKDAKFLCNRKLIG 216
E+ + + F +E L + S K + ++ R
Sbjct: 73 SKQEEMV------------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--- 117
Query: 217 ARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTA-----GGNFVAKASVFGLGKGTAK 271
R +N + + ++ R + L A V + G+
Sbjct: 118 -RLYN------DNQVFAKYNVSRLQP---YLKLRQALLELRPAKNVL---IDGVL----- 159
Query: 272 GGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTA 331
GS K VA + C + D I ++L + T
Sbjct: 160 -GSGKTWVAL----------DVCLSYKVQCKMDFKIF------WLNLK----NCNSPETV 198
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFP-SYVV---VSNNK 387
+ + + + ++ + + I Q + + + +V V N K
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 388 RYKGQSLSSKGL--PSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLR 445
+ +LS K L K D +A +T ++L + TL P +VK
Sbjct: 258 AWNAFNLSCKILLTTRFK-----QVTDFLSAATTTHISLDHHSMTLTPDEVKS------- 305
Query: 446 GDNARIDKGQQALLAGAVGMV---LANAQENGNELLADPHLLPASHINFTDGADLFRDVN 502
LL + L N ++ S + D ++ VN
Sbjct: 306 ------------LLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATWDNWKHVN 351
Query: 503 STKRPVGYLTRATTELG---LKPAPI------MAAF--SSKGPSSVAPEILKPDITAPGV 551
K LT E L+PA ++ F S+ P+ + ++ D+ V
Sbjct: 352 CDK-----LTT-IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-SLIWFDVIKSDV 404
Query: 552 TIIAA----------------------YTEAAGPTNEDY-------DRRRIPFNALSGTS 582
++ Y E +Y D IP
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP-KTFDSDD 463
Query: 583 MSCPHVSG----IVG--LLKTLHPE-------------WSPAAIK---SAIMTTASIQDN 620
+ P++ +G L HPE + I+ +A + SI +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 621 NKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNK------- 673
+ YK +I N DP Y+ N L+FL + N
Sbjct: 524 ----LQQLKFYK--------PYICDN---DP--KYERLVNAILDFLPKIEENLICSKYTD 566
Query: 674 -TQIALFSDKTY 684
+IAL ++
Sbjct: 567 LLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 9e-05
Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 54/180 (30%)
Query: 12 QHNTNNKVAKQLAVASN----EDF--HFKSFP-FP---LI----LSFL-------FSMLQ 50
+H +K+ + + N ++ F FP I LS + M+
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 51 THHCCQKGA------------HS-----HGPELSAVDLHRVTESHYEFLGSFLHGN--DN 91
+ + S + LHR HY +F +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 92 PEDAIFYSYT-RHINGFAAKLDDAVAAEIAKHPKVVSVFLN---QGRKL-HTTHSWEFLG 146
D FYS+ H+ + + + VFL+ +K+ H + +W G
Sbjct: 468 YLDQYFYSHIGHHL--KNIEHPE----RMTLFRM---VFLDFRFLEQKIRHDSTAWNASG 518
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 74/223 (33%)
Query: 21 KQ-LA--VASNEDFHFKSFPFPLI-LSF--------LFSMLQT------HHCCQKGAHSH 62
K +A V + F + L+ + MLQ + + HS
Sbjct: 163 KTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 63 GPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKH 122
+L S L L + + L + V ++
Sbjct: 222 NIKLR-------IHSIQAELRRLLKSKPYENCLL-------V------LLN-V-----QN 255
Query: 123 PKVVSVFLNQGRKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESK 182
K + F + L TT R +V ++ + A ++ S
Sbjct: 256 AKAWNAFNLSCKILLTT---------RFKQV-TDFL-SAATTTHISLD--------HHSM 296
Query: 183 SFS-DEGLGPIPSKWKGICEND--KDAK----FLCNRKLIGAR 218
+ + DE + K+ D ++ + +I
Sbjct: 297 TLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLS--IIAES 336
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 14/65 (21%), Positives = 26/65 (40%)
Query: 579 SGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSY 638
+GTS S P +GI+ L + + ++ ++ T+ N + SY
Sbjct: 258 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 317
Query: 639 GAGHI 643
G G +
Sbjct: 318 GYGLL 322
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 64/240 (26%)
Query: 159 WKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGAR 218
W + G ++ LD G+ D L GA
Sbjct: 31 WAQGFTGHGIVVSILDDGIEKNH--------------------PD-----LAGNYDPGAS 65
Query: 219 YFNKGYAAAVGPLNSSFDTPRDKDGHGTH---TLSTAGGNFVAKASVFGLGKGTAKGGSP 275
+ P T + + HGT ++ N G G +
Sbjct: 66 FDVNDQDPDPQP----RYTQMNDNRHGTRCAGEVAAVANN----------GVCGV-GVAY 110
Query: 276 KARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVDVLSVSLGG--------GPSKFF 326
AR+ ++ VT D + A + ++ + + + S S G GP++
Sbjct: 111 NARIGGVRMLDGEVT-------DAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLA 163
Query: 327 NDSTAIGSFHAVK-HGMVVICSAGNSGPTDSTVS----NIAPWQITVGASTMDRDFPSYV 381
++ G G + + ++GN G + + + + +++ ++T + P Y
Sbjct: 164 EEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYS 223
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 7e-04
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 87 HGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSV 128
I + + + GF K+ + K P V +
Sbjct: 64 AARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 105
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 794 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 99.09 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.0 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 99.0 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.99 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.74 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.73 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.32 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.83 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.99 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.95 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.44 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.34 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.47 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 86.59 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 85.24 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 80.71 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 80.11 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-118 Score=1047.53 Aligned_cols=628 Identities=37% Similarity=0.638 Sum_probs=567.3
Q ss_pred ccCCccccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCC-ccccccccccc
Q 038881 138 TTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKD-AKFLCNRKLIG 216 (794)
Q Consensus 138 ~~~s~~~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~-~~~~~n~ki~g 216 (794)
++++|+|+||.. ...+|..+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.|.+ ....||+|+++
T Consensus 1 Tt~s~~flgl~~-----~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNP-----SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCS-----SSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred CCCChHHcCCCC-----chhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence 578999999974 357999999999999999999999999999999999999999999999988 77899999999
Q ss_pred eeeccccc-ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCC
Q 038881 217 ARYFNKGY-AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295 (794)
Q Consensus 217 ~~~~~~~~-~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~ 295 (794)
+++|.+++ .. ......+..+++|.+||||||||||||+.+++.+.+|++.+.+.||||+|+|+++|+++.. | +.
T Consensus 76 ~~~f~~~~~~~-~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~--g--~~ 150 (649)
T 3i6s_A 76 ANYFNKGILAN-DPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE--G--TF 150 (649)
T ss_dssp EEECCHHHHHH-CTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT--E--EC
T ss_pred eEeccCccccc-ccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC--C--CC
Confidence 99999776 33 1112224567889999999999999999988889999988999999999999999999987 4 89
Q ss_pred hHHHHHHHHHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCC
Q 038881 296 DADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDR 375 (794)
Q Consensus 296 ~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~ 375 (794)
.+++++||+||+++|+||||||||.....+..+++.+++++|.++|++||+||||+|+...++.+.+||+|+|||++.+|
T Consensus 151 ~~~i~~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr 230 (649)
T 3i6s_A 151 TSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR 230 (649)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeeccc
Confidence 99999999999999999999999998667788999999999999999999999999999999999999999999999999
Q ss_pred CccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCc--cceEEEEecCCchhhhH
Q 038881 376 DFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKV--KGKILVCLRGDNARIDK 453 (794)
Q Consensus 376 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~g~~~~~~~ 453 (794)
.|..++.+++++++.|.+++..... ...+|+++.. ....|.+..++...+ +||||+|+|+.|.+.+|
T Consensus 231 ~f~~~~~lgng~~~~g~sl~~~~~~-~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k 299 (649)
T 3i6s_A 231 TFAGTLTLGNGLKIRGWSLFPARAF-VRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQM 299 (649)
T ss_dssp EEEEEEEETTSCEEEEECCCSSCBC-EEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHH
T ss_pred ceeeEEEeCCCcEEeeeecccCccc-CcceeeEecc----------cccccccccccccccccCCcEEEEeCCCccHHHH
Confidence 9999999999999999999877654 6789999854 356899888887777 99999999999999999
Q ss_pred HHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCC
Q 038881 454 GQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKG 533 (794)
Q Consensus 454 ~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 533 (794)
..+++++|+.|+|++|+. .....+.+.+|+++|+..+|+.|+.|++++.+++++|.+..+..+....+.++.|||||
T Consensus 300 ~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrG 376 (649)
T 3i6s_A 300 RIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARG 376 (649)
T ss_dssp HHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCS
T ss_pred HHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCC
Confidence 999999999999999987 34556778999999999999999999999999999999999998888899999999999
Q ss_pred CCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCC-CCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 038881 534 PSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDR-RRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIM 612 (794)
Q Consensus 534 p~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~ 612 (794)
|+...++++||||+|||++|+++|+..........+. ....|..+||||||||||||++|||||+||+|+|++||++||
T Consensus 377 P~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLm 456 (649)
T 3i6s_A 377 PSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMM 456 (649)
T ss_dssp SCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred CCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 9987779999999999999999998865433322222 336899999999999999999999999999999999999999
Q ss_pred hcCccccCCCcccccC-CCCCCCCCcccccccccccccCCCccccCCchhhhhhhhcCCCCccceEeccccccc--CCCC
Q 038881 613 TTASIQDNNKGQILNA-SSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYR--CPEY 689 (794)
Q Consensus 613 ~TA~~~~~~g~~~~~~-~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 689 (794)
+||.++++.+.++.+. .+.+++++.||+|+||+.+|++||||||.+.+||+.|||++||+.++|+.|++.++. |++
T Consensus 457 tTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~- 535 (649)
T 3i6s_A 457 TTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN- 535 (649)
T ss_dssp HTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC-
T ss_pred cccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC-
Confidence 9999999999998875 466888999999999999999999999999999999999999999999999998888 986
Q ss_pred CCCCCCCCCeEEeec-CCce-----EEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 690 VSTANFNYPSITVPK-LSGS-----IIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 690 ~~~~~~n~ps~~~~~-~~~~-----~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
...+||||||++.. +.+. ++|+|||||||. ..||+++++.|.|++|+|+|.+|+|++.+|+++|+|||+...
T Consensus 536 -~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~ 614 (649)
T 3i6s_A 536 -PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIG 614 (649)
T ss_dssp -CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECC
T ss_pred -chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecc
Confidence 46799999999987 5555 899999999999 899999999999999999999999988899999999999876
Q ss_pred cccCCCCeEEEEEEEEeC-CccEEEeEEEEEe
Q 038881 763 VRAATKDYVFGDLVWADD-KQHQVRSPIVVNP 793 (794)
Q Consensus 763 ~~~~~~~~~~G~~~~~~~-~~~~v~~P~~~~~ 793 (794)
...+.|.||+|+|+++ +.|.||+||+|++
T Consensus 615 --~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~ 644 (649)
T 3i6s_A 615 --DEGQSRNVGSITWVEQNGNHSVRSPIVTSP 644 (649)
T ss_dssp --C---CCCEEEEEEEETTSCCEEEEEEEEEE
T ss_pred --cCCCceEEEEEEEEcCCCCeEEEEeEEEEE
Confidence 4567789999999996 7899999999986
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-109 Score=967.09 Aligned_cols=612 Identities=42% Similarity=0.751 Sum_probs=516.8
Q ss_pred ccCCccccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccce
Q 038881 138 TTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGA 217 (794)
Q Consensus 138 ~~~s~~~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~ 217 (794)
++++|+|+||+ ..+|.+..+|+||+|||||||||++||+|.++++++++.+|+|.|+.+.+ +.||+|++++
T Consensus 1 tt~s~~flGl~-------~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~--~~~n~k~ig~ 71 (621)
T 3vta_A 1 TTRSWDFLGFP-------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNN--FRCNRKIIGA 71 (621)
T ss_dssp CCSHHHHTTCC-------TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSS--CCCCSSEEEE
T ss_pred CCCChhHcCCC-------ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCC--cccCcceeee
Confidence 57899999997 36888889999999999999999999999999999999999999998865 7899999999
Q ss_pred eecccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChH
Q 038881 218 RYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDA 297 (794)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~ 297 (794)
++|..+. .....+..+++|++||||||||||||+.+.+.+.+|.+.+.++||||+|+|++||+|++. | |..+
T Consensus 72 ~~~~~~~----~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~--g--~~~~ 143 (621)
T 3vta_A 72 RSYHIGR----PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND--G--CSDT 143 (621)
T ss_dssp EECCCSS----SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETT--E--ECHH
T ss_pred eecccCC----ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCC--C--CCHH
Confidence 9998763 111223557889999999999999999988888888888899999999999999999987 4 8899
Q ss_pred HHHHHHHHhHhCCceEEEEccCCCC-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCC
Q 038881 298 DILAAFDMAIHDGVDVLSVSLGGGP-SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRD 376 (794)
Q Consensus 298 ~i~~ai~~a~~~g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~ 376 (794)
++++||++|+++|+||||||||+.. ..+..+++++++++|.++|++||+||||+|+...++++.+||+++|++++.++.
T Consensus 144 di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~ 223 (621)
T 3vta_A 144 DILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRK 223 (621)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccc
Confidence 9999999999999999999999873 446678899999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHH
Q 038881 377 FPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQ 456 (794)
Q Consensus 377 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 456 (794)
+...+.++++..+.+.++.... ...+++++..+.............|.+..++..+++|||++|.++. ..+..+
T Consensus 224 ~~~~~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~---~~~~~~ 297 (621)
T 3vta_A 224 FVTQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF---GPHEFF 297 (621)
T ss_dssp EEEEEEETTSCEEEEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC---CHHHHH
T ss_pred ceeeEEeccCceeeeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecCC---ChhHHh
Confidence 9999999999999998876543 5678888877766555566677889999999999999999998754 456777
Q ss_pred HHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCC
Q 038881 457 ALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSS 536 (794)
Q Consensus 457 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 536 (794)
....|+.+++++++... ..+.+.+|...++..++..++.|+..+..+.+.+...... .....+.++.||||||+.
T Consensus 298 ~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSSrGP~~ 372 (621)
T 3vta_A 298 KSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNR 372 (621)
T ss_dssp HHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSCCCSCT
T ss_pred hhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecCCCCCC
Confidence 88899999999987653 2356789999999999999999999999988888665544 345678999999999998
Q ss_pred CCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 537 VAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 537 ~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
..++++||||+|||++|+|+++....... ......|..|||||||||||||++|||||+||+|+|++||++||+||+
T Consensus 373 ~~~~ilKPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~ 449 (621)
T 3vta_A 373 ATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTAS 449 (621)
T ss_dssp TCTTSCSCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCB
T ss_pred CCCCeeccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCC
Confidence 77899999999999999999986543322 234468999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccCCCCCCCCCcccccccccccccCCCccccCCchhhhhhhhcCCCCccceEecccccccCCCCC--CCCC
Q 038881 617 IQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYV--STAN 694 (794)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 694 (794)
+++..+. +..+++||+|+||+.+|++||||||++.+||+.|||+++|++++++.+++....|+... ...+
T Consensus 450 ~~~~~~~--------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (621)
T 3vta_A 450 PMNARFN--------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWD 521 (621)
T ss_dssp CCCTTTC--------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGG
T ss_pred cccccCC--------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccc
Confidence 8876543 56788999999999999999999999999999999999999999999999988898644 3779
Q ss_pred CCCCeEEee---cCCceEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCe
Q 038881 695 FNYPSITVP---KLSGSIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDY 770 (794)
Q Consensus 695 ~n~ps~~~~---~~~~~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~ 770 (794)
||||||++. .+..+++|+|||||++. ..||+++++.|.|++|+|+|.+|+|++.+|+++|+|||+. ..++.|
T Consensus 522 lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~----~~~~~~ 597 (621)
T 3vta_A 522 LNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG----SIKGFV 597 (621)
T ss_dssp SCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE----CCCSSE
T ss_pred cccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe----cCCCce
Confidence 999999985 44568899999999999 9999999999999999999999999888999999999976 467889
Q ss_pred EEEEEEEEeCCccEEEeEEEEEe
Q 038881 771 VFGDLVWADDKQHQVRSPIVVNP 793 (794)
Q Consensus 771 ~~G~~~~~~~~~~~v~~P~~~~~ 793 (794)
+||+|+|++ +.|.||+||+|+.
T Consensus 598 ~~g~l~w~d-~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 598 VSASLVWSD-GVHYVRSPITITS 619 (621)
T ss_dssp EEEEEEEEC-SSCCCEEEEEEEC
T ss_pred EEEEEEEEc-CCEEEEeCEEEEE
Confidence 999999998 8999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-81 Score=760.77 Aligned_cols=541 Identities=24% Similarity=0.311 Sum_probs=422.2
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCC----------C-ccccccccccceeecccc
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDK----------D-AKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~----------~-~~~~~n~ki~g~~~~~~~ 223 (794)
+..+|..+++|+||+|||||||||++||+|.+. ..|++.|..+. . .+.+||+|++++++|.++
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 458999999999999999999999999999853 56766665321 1 345899999999999754
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
. ...|..||||||||||||+.+.+.+ .++.+.||||+|+|+++|+|++. |..+..+++++||
T Consensus 80 ~------------~~~D~~gHGThVAgiiAg~~~~~~~----~~~~~~GvAP~A~l~~~kv~~~~--g~~~~~~~i~~Ai 141 (926)
T 1xf1_A 80 G------------KTAVDQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVN--GLADYARNYAQAI 141 (926)
T ss_dssp S------------CCCCSSTTTTHHHHSSCCCCCCCCS----CSCCTTTTCTTSEEEEEECCCCS--CHHHHHHHHHHHH
T ss_pred C------------CCCCCCCcHHHHHHHHhCCCccCcc----cCCceEEECCCCEEEEEEeecCC--CCCCcHHHHHHHH
Confidence 1 2238899999999999998654332 13567999999999999999876 3124567899999
Q ss_pred HHhHhCCceEEEEccCCCC--CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCC-------------CCCcCC--CCCceE
Q 038881 304 DMAIHDGVDVLSVSLGGGP--SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPT-------------DSTVSN--IAPWQI 366 (794)
Q Consensus 304 ~~a~~~g~dVIN~SlG~~~--~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~-------------~~~~~~--~ap~vi 366 (794)
++|+++|+||||||||+.. ...+.+++..+++.|.++|++||+||||+|+. ..++.+ .+||+|
T Consensus 142 ~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vi 221 (926)
T 1xf1_A 142 RDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTL 221 (926)
T ss_dssp HHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSE
T ss_pred HHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceE
Confidence 9999999999999999873 33456778889999999999999999999963 223333 479999
Q ss_pred EeccccCCCCccceEEe-cCCeEEeeeecCC-CCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEe
Q 038881 367 TVGASTMDRDFPSYVVV-SNNKRYKGQSLSS-KGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCL 444 (794)
Q Consensus 367 tVgAs~~~~~~~~~~~~-~~~~~~~g~~~~~-~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~ 444 (794)
+|||++.++.+...+.+ +++....+.++.. ..+.....+|+++... .|.+..+ .+++||||||+
T Consensus 222 tVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gkivl~~ 287 (926)
T 1xf1_A 222 TVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGKIALIE 287 (926)
T ss_dssp EEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTSEEEEE
T ss_pred EEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCeEEEEE
Confidence 99999999988888877 4443333333321 1222357789998532 4776666 68999999999
Q ss_pred cCCchhhhHHHHHHHcCceEEEEeccCCCCccc-cCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCC
Q 038881 445 RGDNARIDKGQQALLAGAVGMVLANAQENGNEL-LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPA 523 (794)
Q Consensus 445 ~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 523 (794)
|+.|.+.+|..+++++||.|+|++|+....... ......+|+.+|+..+|..|+. ....+.++............
T Consensus 288 rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~ 363 (926)
T 1xf1_A 288 RGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASG 363 (926)
T ss_dssp CCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSC
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCc
Confidence 999999999999999999999999987643322 2345789999999999998874 33344443333323445567
Q ss_pred CccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hC
Q 038881 524 PIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LH 599 (794)
Q Consensus 524 ~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~ 599 (794)
+.++.||||||+. ++++||||+|||++|+|++++ +.|..+||||||||||||++|||+| .|
T Consensus 364 ~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~ 428 (926)
T 1xf1_A 364 TKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQY 428 (926)
T ss_dssp SBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSS
T ss_pred ceeccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHHHHhccC
Confidence 8999999999997 999999999999999999976 3899999999999999999999964 59
Q ss_pred CCCCHHH----HHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccCCCccccCCchhhhhhhhcCCCCccc
Q 038881 600 PEWSPAA----IKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQ 675 (794)
Q Consensus 600 p~lsp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~ 675 (794)
|+|+|+| ||++||+||+++...+. ...+++++||+|+||+.+|+++.+ |+|..+++..
T Consensus 429 P~~sp~~~~~~Iks~L~~TA~~~~~~~~------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~- 490 (926)
T 1xf1_A 429 PDMTPSERLDLAKKVLMSSATALYDEDE------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS- 490 (926)
T ss_dssp SSSHHHHHHHHHHHHHHHHSBCCEEGGG------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS-
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcccCCC------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc-
Confidence 9999997 99999999998754321 224678899999999999999854 5677665432
Q ss_pred eEecccccccCCCCCCCCCCCCCeEEeecCCceEEEEEEEEecCC-C--ceEEEEEeC--CCCcEEEEEccEEEEe----
Q 038881 676 IALFSDKTYRCPEYVSTANFNYPSITVPKLSGSIIVSRTVRNVGS-P--GTYIARVRN--PKGISVSVEPRSLKFL---- 746 (794)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~n~ps~~~~~~~~~~~~~~tv~n~~~-~--~ty~~~~~~--~~g~~v~~~p~~~~~~---- 746 (794)
+|.++++....+++|||+|+|+ + .+|++++.. |.+..++++|..+.+.
T Consensus 491 -----------------------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~ 547 (926)
T 1xf1_A 491 -----------------------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQK 547 (926)
T ss_dssp -----------------------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEE
T ss_pred -----------------------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCe
Confidence 3344444567899999999997 4 567777765 6688888888765443
Q ss_pred ---cCCcEEEEEEEEEEccc------ccCCCCeEEEEEEEEeC-Ccc-EEEeEEEEEe
Q 038881 747 ---RVGEEKNFKVTIKVRKV------RAATKDYVFGDLVWADD-KQH-QVRSPIVVNP 793 (794)
Q Consensus 747 ---~~~~~~~~~vt~~~~~~------~~~~~~~~~G~~~~~~~-~~~-~v~~P~~~~~ 793 (794)
++||+++|+|||++... .++++.|+||+|+|+++ +.| .||+||++..
T Consensus 548 vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 548 ITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred EEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 45999999999998620 13467789999999953 545 5999999864
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-61 Score=553.36 Aligned_cols=364 Identities=32% Similarity=0.457 Sum_probs=289.3
Q ss_pred cEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHHHHH-----------H
Q 038881 52 HHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEI-----------A 120 (794)
Q Consensus 52 ~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L-----------~ 120 (794)
.|||+|++.... +...++++.+ ..++.++|+ .|+||+++++++++++| +
T Consensus 37 ~~iV~~~~~~~~------------~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~ 96 (539)
T 3afg_A 37 STIIMFDNQADK------------EKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNA 96 (539)
T ss_dssp EEEEEESSHHHH------------HHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CC
T ss_pred EEEEEECCCCCH------------HHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccc
Confidence 599999985311 2223334332 257889997 79999999999999999 8
Q ss_pred cCCCeEEEEecceecccccCCcccccccc-CCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccc
Q 038881 121 KHPKVVSVFLNQGRKLHTTHSWEFLGLER-NGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGI 199 (794)
Q Consensus 121 ~~p~V~~v~~~~~~~~~~~~s~~~~gl~~-~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~ 199 (794)
++|+|++|++++.+++.... ++++. ..+..+..+|..+++|+||+|||||||||++||+|.+
T Consensus 97 ~~~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------------- 159 (539)
T 3afg_A 97 QLSGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------------- 159 (539)
T ss_dssp CCTTEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT-------------
T ss_pred cCCCeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC-------------
Confidence 99999999999988765321 12211 1122356899999999999999999999999999964
Q ss_pred cccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceE
Q 038881 200 CENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARV 279 (794)
Q Consensus 200 ~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L 279 (794)
++++.++|.++ ...+.|++||||||||||+|.... ..+.+.||||+|+|
T Consensus 160 -------------~i~~~~d~~~~-----------~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l 208 (539)
T 3afg_A 160 -------------KVIGWVDFVNG-----------KTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKL 208 (539)
T ss_dssp -------------TEEEEEETTTC-----------CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEE
T ss_pred -------------CEeeeEECCCC-----------CCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEE
Confidence 35566677643 235678999999999999987421 12346899999999
Q ss_pred EEEEeecCCCCCCCCChHHHHHHHHHhHhC----CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 038881 280 AAYKVCWPPVTGNECYDADILAAFDMAIHD----GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD 355 (794)
Q Consensus 280 ~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~ 355 (794)
+.+|++++. | .+..+++++||+||+++ |++|||||||........+.+..++.++.++|++||+||||+|+..
T Consensus 209 ~~~kv~~~~--g-~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~ 285 (539)
T 3afg_A 209 VGIKVLNGQ--G-SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNK 285 (539)
T ss_dssp EEEECSCTT--S-EEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSS
T ss_pred EEEEeecCC--C-CcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCC
Confidence 999999876 4 47789999999999975 9999999999885445678899999999999999999999999865
Q ss_pred CCc--CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCC
Q 038881 356 STV--SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDP 433 (794)
Q Consensus 356 ~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~ 433 (794)
.++ +..++++|+|||++.+
T Consensus 286 ~~~~~Pa~~~~vitVgA~~~~----------------------------------------------------------- 306 (539)
T 3afg_A 286 YTVGSPAAASKVITVGAVDKY----------------------------------------------------------- 306 (539)
T ss_dssp SCCCTTTTCSSSEEEEEECTT-----------------------------------------------------------
T ss_pred CcccCCccCCceEEEeeecCC-----------------------------------------------------------
Confidence 443 4567999999985431
Q ss_pred CCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEe
Q 038881 434 KKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTR 513 (794)
Q Consensus 434 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 513 (794)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHH
Q 038881 514 ATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVG 593 (794)
Q Consensus 514 ~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 593 (794)
+.+++||||||+. ++++||||+|||++|+++++...... ......|..++|||||||||||++|
T Consensus 307 ----------~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~sGTSmAaP~VAG~aA 370 (539)
T 3afg_A 307 ----------DVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAPGTAMATPHVAGIAA 370 (539)
T ss_dssp ----------SCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEECSHHHHHHHHHHHHH
T ss_pred ----------cccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCCC----CCCcccccccCchHHHHHHHHHHHH
Confidence 3788999999998 89999999999999999986532110 1112369999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccCC
Q 038881 594 LLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 594 Ll~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
||+|++|+|+|++||++|++||+++...+ .+++.||+|+||+.+|++.
T Consensus 371 Ll~~~~p~~s~~~vk~~L~~tA~~~~~~~----------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 371 LLLQAHPSWTPDKVKTALIETADIVKPDE----------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHSBCSSGGG----------CSBTTTBTCBCCHHHHHTG
T ss_pred HHHHHCCCCCHHHHHHHHHhhCccCCCCC----------CCccCccCCccCHHHHhhh
Confidence 99999999999999999999999874321 2467899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=515.74 Aligned_cols=344 Identities=24% Similarity=0.344 Sum_probs=278.4
Q ss_pred ccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHHHHHHcCCCeEEEEe
Q 038881 51 THHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFL 130 (794)
Q Consensus 51 ~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~ 130 (794)
.+|||+||+.... .++++.. ..++.+.|. .+++|+++++++++++|+++|+|++|++
T Consensus 3 ~~~iV~~~~~~~~---------------~~~~~~~-------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~ 59 (395)
T 2z2z_A 3 IRVIVSVDKAKFN---------------PHEVLGI-------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEF 59 (395)
T ss_dssp EEEEEEECTTTCC---------------HHHHHHT-------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEE
T ss_pred EEEEEEECCCccH---------------HHHHHHc-------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEE
Confidence 5899999996422 1233332 357889998 5999999999999999999999999999
Q ss_pred cceecccccCC-----------ccccccccCCCccccccccccCCCCc--eEEEEecCCCCCCCCCCcCCCCCCCCCccc
Q 038881 131 NQGRKLHTTHS-----------WEFLGLERNGRVESNSIWKKARYGED--TIIGNLDTGVWPESKSFSDEGLGPIPSKWK 197 (794)
Q Consensus 131 ~~~~~~~~~~s-----------~~~~gl~~~~~~~~~~~~~~g~~G~G--V~VaVIDTGId~~Hp~f~~~g~~~~~~~~~ 197 (794)
++.++++.... ...|++..+. +..+|..+ +|+| |+|||||||||++||+|.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~---~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~---------- 125 (395)
T 2z2z_A 60 DHQAVLLGKPSWLGGGSTQPAQTIPWGIERVK---APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------- 125 (395)
T ss_dssp CCEEEECCEECC------CCSCCCCHHHHHTT---CGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG----------
T ss_pred eeeecccCCCCcccccccCccccCCcchhhcC---HHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc----------
Confidence 99887643221 1235555443 56899988 9999 99999999999999999743
Q ss_pred cccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCc
Q 038881 198 GICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKA 277 (794)
Q Consensus 198 g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A 277 (794)
+..+++|..+. ...+..+..|.+||||||||||+|.. ++..+.||||+|
T Consensus 126 ----------------~~~~~~~~~~~------~~~~~~~~~d~~gHGT~vAgiia~~~---------n~~g~~GvAp~a 174 (395)
T 2z2z_A 126 ----------------IAWCVSTLRGK------VSTKLRDCADQNGHGTHVIGTIAALN---------NDIGVVGVAPGV 174 (395)
T ss_dssp ----------------EEEEEECGGGC------CBCCHHHHBCSSSHHHHHHHHHHCCC---------SSSSCCCSSTTC
T ss_pred ----------------cccCccccCCc------ccCCCCCCCCCCCCHHHHHHHHHeec---------CCCceEEECCCC
Confidence 34444554331 00001124678999999999999873 122358999999
Q ss_pred eEEEEEeecCCCCCCCCChHHHHHHHHHhHhC--------------------CceEEEEccCCCCCCCCCCHHHHHHHHH
Q 038881 278 RVAAYKVCWPPVTGNECYDADILAAFDMAIHD--------------------GVDVLSVSLGGGPSKFFNDSTAIGSFHA 337 (794)
Q Consensus 278 ~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~~~a~~~a 337 (794)
+|+.+|++++. | .+..+++++||+||+++ +++|||||||... ....+..++.++
T Consensus 175 ~l~~~kv~~~~--g-~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a 248 (395)
T 2z2z_A 175 QIYSVRVLDAR--G-SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQA 248 (395)
T ss_dssp EEEEEECSCTT--S-EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHH
T ss_pred EEEEEEEecCC--C-CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHHHHHHHHH
Confidence 99999999876 4 46789999999999987 9999999999873 245677788889
Q ss_pred HhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcc
Q 038881 338 VKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAAN 417 (794)
Q Consensus 338 ~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~ 417 (794)
.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 249 ~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------------------- 285 (395)
T 2z2z_A 249 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN------------------------------------------- 285 (395)
T ss_dssp HHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------------------------------------------
T ss_pred HHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecCC-------------------------------------------
Confidence 9999999999999998877777888999999986432
Q ss_pred cchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHH
Q 038881 418 ASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADL 497 (794)
Q Consensus 418 ~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 497 (794)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCcccee
Q 038881 498 FRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNA 577 (794)
Q Consensus 498 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~ 577 (794)
+.++.||+||| +|+|||++|+|+++. +.|..
T Consensus 286 --------------------------~~~a~fS~~G~----------~v~APG~~i~s~~~~-------------~~y~~ 316 (395)
T 2z2z_A 286 --------------------------DNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYET 316 (395)
T ss_dssp --------------------------SCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEE
T ss_pred --------------------------CCCCcccCCCC----------CEEeCCCCeeeecCC-------------CceEe
Confidence 47789999997 689999999999976 48999
Q ss_pred eccccchhhHHHHHHHHHHhhCC-------------CCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccc
Q 038881 578 LSGTSMSCPHVSGIVGLLKTLHP-------------EWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644 (794)
Q Consensus 578 ~sGTSmAaP~VAG~aALl~q~~p-------------~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn 644 (794)
++|||||||||||++|||+|++| .|++.+||++|++||+++... ..+..||||+||
T Consensus 317 ~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vd 385 (395)
T 2z2z_A 317 LMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVR 385 (395)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCC
T ss_pred cCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC-----------CCCCCccCceeC
Confidence 99999999999999999999999 999999999999999987432 236789999999
Q ss_pred cccccCC
Q 038881 645 PNLAMDP 651 (794)
Q Consensus 645 ~~~Al~~ 651 (794)
+.+|++.
T Consensus 386 ~~~A~~~ 392 (395)
T 2z2z_A 386 AALAVQA 392 (395)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-55 Score=499.79 Aligned_cols=358 Identities=18% Similarity=0.213 Sum_probs=275.1
Q ss_pred CccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHHHHHHc-CCCeEEE
Q 038881 50 QTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAK-HPKVVSV 128 (794)
Q Consensus 50 ~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~-~p~V~~v 128 (794)
.+.|||++++. ....++++.. +.++.+.|. .+++|+++++++++++|++ +|+|++|
T Consensus 44 ~~~yiv~~~~~---------------~~~~~~~~~~-------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v 100 (471)
T 3t41_A 44 ELYYSVEYKNT---------------ATFNKLVKKK-------SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYI 100 (471)
T ss_dssp CEEEEEEESCH---------------HHHHHHHHHH-------TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEE
T ss_pred ceEEEEEcCCH---------------HHHHHHHHhC-------CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEE
Confidence 45799988773 2233344333 246778886 6999999999999999999 9999999
Q ss_pred EecceecccccCC----------ccccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCcccc
Q 038881 129 FLNQGRKLHTTHS----------WEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKG 198 (794)
Q Consensus 129 ~~~~~~~~~~~~s----------~~~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g 198 (794)
++++.+++..... ...|++..+.. ...+|..+.+|+||+|||||||||++||+|.++- |.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~--~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~ 171 (471)
T 3t41_A 101 NATCSTCITSEKTIDRTSNESLFSRQWDMNKITN--NGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STD 171 (471)
T ss_dssp EECCSSCBCCCCCCCC---CCSCCCCHHHHTTTT--TTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTT
T ss_pred EecceeccccccccccCCCCccccccccHhhccC--cHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccC
Confidence 9998887654321 12345554431 1368999999999999999999999999998641 111
Q ss_pred ccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCce
Q 038881 199 ICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKAR 278 (794)
Q Consensus 199 ~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~ 278 (794)
. ..++....|... ......+...+.|..||||||||||+|+. .+.||||+|+
T Consensus 172 ~------------~~~~~~~~~~~~----~~~~~~~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~ 223 (471)
T 3t41_A 172 S------------KNLVPLNGFRGT----EPEETGDVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNK 223 (471)
T ss_dssp C------------EECCCTTCGGGC----CTTCCCCTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSC
T ss_pred C------------cccccCCCccCC----CcccCCCCCCCcCCCCccchhhheeecCC------------ceeEECCCCe
Confidence 0 001111111111 00111123356789999999999999863 2589999999
Q ss_pred EEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCC-CC------------CCCCHHHHHHHHHHhCCcEEE
Q 038881 279 VAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGP-SK------------FFNDSTAIGSFHAVKHGMVVI 345 (794)
Q Consensus 279 L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~-~~------------~~~~~~~~a~~~a~~~Gv~vV 345 (794)
|+.+|++++. .+...++++||+++++++++|||||||... .. ...+.+..++..+.++|++||
T Consensus 224 l~~~kv~~~~----~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV 299 (471)
T 3t41_A 224 FTMYRVFGSK----KTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVV 299 (471)
T ss_dssp EEEEECCSSS----CCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeccCC----CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEE
Confidence 9999999874 378999999999999999999999999841 00 122457788888999999999
Q ss_pred EecCCCCCCCCC------------------cCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceece
Q 038881 346 CSAGNSGPTDST------------------VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPL 407 (794)
Q Consensus 346 ~AAGN~G~~~~~------------------~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl 407 (794)
+||||+|..... .+..++++|+|||++.+
T Consensus 300 ~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~~--------------------------------- 346 (471)
T 3t41_A 300 AAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQK--------------------------------- 346 (471)
T ss_dssp EECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECTT---------------------------------
T ss_pred EEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCCC---------------------------------
Confidence 999999976542 45677899999986432
Q ss_pred EEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEE
Q 038881 408 ISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPAS 487 (794)
Q Consensus 408 v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~ 487 (794)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCce---------------
Q 038881 488 HINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVT--------------- 552 (794)
Q Consensus 488 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~--------------- 552 (794)
+.+++||+|||+. |||+|||++
T Consensus 347 ------------------------------------~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~ 383 (471)
T 3t41_A 347 ------------------------------------SNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNE 383 (471)
T ss_dssp ------------------------------------SSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHT
T ss_pred ------------------------------------CCCCCccCCCCCC-------CeEEecCCCccccccccccccccc
Confidence 4688999999963 499999987
Q ss_pred -------EEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCccccCCCcc
Q 038881 553 -------IIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHP-EWSPAAIKSAIMTTASIQDNNKGQ 624 (794)
Q Consensus 553 -------I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lsp~~ik~~L~~TA~~~~~~g~~ 624 (794)
|+++++. +.|..++|||||||||||++|||+|++| .++|++||++|++||.+...
T Consensus 384 ~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~---- 446 (471)
T 3t41_A 384 GYMHKENILTTANN-------------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN---- 446 (471)
T ss_dssp TTHHHHSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC----
T ss_pred ccccCceeEecCCC-------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC----
Confidence 8888866 4899999999999999999999999999 89999999999999987532
Q ss_pred cccCCCCCCCCCcccccccccccccCCC
Q 038881 625 ILNASSYKATPFSYGAGHIQPNLAMDPG 652 (794)
Q Consensus 625 ~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 652 (794)
.++..||||+||+.+|++..
T Consensus 447 --------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 447 --------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp --------CCHHHHTTCBBCHHHHTTTT
T ss_pred --------CCcCccccChhCHHHHHHHH
Confidence 35678999999999999853
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-55 Score=507.93 Aligned_cols=380 Identities=21% Similarity=0.211 Sum_probs=279.5
Q ss_pred cccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCH----HHHHHHH-
Q 038881 46 FSMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDD----AVAAEIA- 120 (794)
Q Consensus 46 ~~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~----~~i~~L~- 120 (794)
...++++|||+||+.. ...++++.+ + .++.+.+. .+++++++++. +.+++|+
T Consensus 27 ~~~~~~~~IV~~k~~~---------------~~~~~~~~~-g------~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~ 83 (671)
T 1r6v_A 27 GEYTEGKILVGYNDRS---------------EVDKIVKAV-N------GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKA 83 (671)
T ss_dssp TSBCTTEEEEEESSHH---------------HHHHHHHHH-T------CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTT
T ss_pred CccCCccEEEEECCCc---------------CHHHHHHhc-C------CeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHh
Confidence 3578999999999842 112233332 1 45677776 78999999864 3456776
Q ss_pred -cCCCeEEEEecceecccc----c-----------------------CCccccccccCCCcccccc-ccccCCCCceEEE
Q 038881 121 -KHPKVVSVFLNQGRKLHT----T-----------------------HSWEFLGLERNGRVESNSI-WKKARYGEDTIIG 171 (794)
Q Consensus 121 -~~p~V~~v~~~~~~~~~~----~-----------------------~s~~~~gl~~~~~~~~~~~-~~~g~~G~GV~Va 171 (794)
++|+|++|||+..+++.. . .....|++..+. +..+ |+. ++|+||+||
T Consensus 84 ~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~---~~~a~w~~-~tG~gV~VA 159 (671)
T 1r6v_A 84 LALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG---VTQQLWEE-ASGTNIIVA 159 (671)
T ss_dssp SCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT---CCHHHHHH-CSCTTCEEE
T ss_pred ccCCCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccC---Cchhhhhc-cCCCCCEEE
Confidence 489999999997664431 0 001234554433 5566 888 899999999
Q ss_pred EecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeec
Q 038881 172 NLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLST 251 (794)
Q Consensus 172 VIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 251 (794)
|||||||++||+|.++ ++.++.+..+. ..+...+..|.+|||||||||
T Consensus 160 VIDTGVd~~HpdL~~~--------------------------~~~g~~~~~~~------~~p~~~d~~d~~gHGThVAGi 207 (671)
T 1r6v_A 160 VVDTGVDGTHPDLEGQ--------------------------VIAGYRPAFDE------ELPAGTDSSYGGSAGTHVAGT 207 (671)
T ss_dssp EEESCCBTTSGGGTTT--------------------------BCCEEEGGGTE------EECTTCBCCTTCSHHHHHHHH
T ss_pred EEeCCCCCCCcccccc--------------------------EEecccccCCC------cCCCCCCCccCCCcchhhhhh
Confidence 9999999999999754 11112211110 000012345678999999999
Q ss_pred ccccccccccccccCCCcccccCCCceEEEEEeecC----CCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCCC
Q 038881 252 AGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWP----PVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFN 327 (794)
Q Consensus 252 iag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~----~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 327 (794)
|||.. ++..+.||||+|+|+.+|+++. ...| ....+.+++||+||+++|++|||||||+.. +.
T Consensus 208 IAa~~---------ng~gv~GVAP~A~I~~vkv~~~~~~~~g~g-~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s 274 (671)
T 1r6v_A 208 IAAKK---------DGKGIVGVAPGAKIMPIVIFDDPALVGGNG-YVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YS 274 (671)
T ss_dssp HHCCC---------SSSSCCCSCTTSEEEEEESBCCHHHHCTTS-BCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CC
T ss_pred hhccC---------CCCceEEECCCCEEEEEEeccCccccCCCC-ccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CC
Confidence 99974 1233589999999999999986 1112 345678999999999999999999999862 34
Q ss_pred CHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceec
Q 038881 328 DSTAIGSFHAVKHGMVVICSAGNSGPTD-STVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFP 406 (794)
Q Consensus 328 ~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p 406 (794)
..+..++..|.++|++||+||||+|... ..++...|++|+|||++.+..
T Consensus 275 ~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~------------------------------ 324 (671)
T 1r6v_A 275 YTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------------ 324 (671)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT------------------------------
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC------------------------------
Confidence 5678888899999999999999999765 455667899999999643210
Q ss_pred eEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccE
Q 038881 407 LISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPA 486 (794)
Q Consensus 407 lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~ 486 (794)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCC-
Q 038881 487 SHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTN- 565 (794)
Q Consensus 487 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~- 565 (794)
...+++||++||.+ ||+|||++|+|+++.......
T Consensus 325 ------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~ 360 (671)
T 1r6v_A 325 ------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYE 360 (671)
T ss_dssp ------------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCC
T ss_pred ------------------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccc
Confidence 01478999999987 999999999999876422110
Q ss_pred ----CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccccc
Q 038881 566 ----EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641 (794)
Q Consensus 566 ----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 641 (794)
.......+.|..++|||||||||||++|||+|++|+|+|.+||++|++||+++...+ .+..||||
T Consensus 361 ~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g-----------~d~~~G~G 429 (671)
T 1r6v_A 361 GHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYG 429 (671)
T ss_dssp CCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----------CBTTTBTC
T ss_pred cccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-----------CCCCcccc
Confidence 001112357999999999999999999999999999999999999999999875332 35689999
Q ss_pred ccccccccCCCccccCCchhh
Q 038881 642 HIQPNLAMDPGLVYDLTENDY 662 (794)
Q Consensus 642 ~vn~~~Al~~~lv~~~~~~~~ 662 (794)
+||+.+|++..|..+....+|
T Consensus 430 ~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 430 LVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp BCCHHHHHHCCCCSSSEEEEE
T ss_pred eeCHHHHhhhhcCCCCCccce
Confidence 999999999887766544444
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=524.86 Aligned_cols=375 Identities=19% Similarity=0.169 Sum_probs=62.1
Q ss_pred ccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHHHHHHcCCCeE
Q 038881 47 SMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVV 126 (794)
Q Consensus 47 ~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~ 126 (794)
..+|++|||+||++... ...+.+.+++...+.+. ....++.+.|++.|+||+++++++++++|+++|+|+
T Consensus 72 ~~ipg~YIV~lk~~~~~---------~~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~ 141 (692)
T 2p4e_P 72 WRLPGTYVVVLKEETHL---------SQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVD 141 (692)
T ss_dssp GEEEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEE
T ss_pred ccCCCcEEEEECCCCCH---------HHHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCce
Confidence 47899999999997643 33344445554433211 123578999999999999999999999999999999
Q ss_pred EEEecceecccccCCccccccccCCCcc-ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCC
Q 038881 127 SVFLNQGRKLHTTHSWEFLGLERNGRVE-SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKD 205 (794)
Q Consensus 127 ~v~~~~~~~~~~~~s~~~~gl~~~~~~~-~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~ 205 (794)
+||+++.+..+ ... |++.++.... ....|..+.+|+||+|||||||||++||+|.++. .|.
T Consensus 142 ~Vepd~~v~~~-~~p---WgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~------~~~-------- 203 (692)
T 2p4e_P 142 YIEEDSSVFAQ-SIP---WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV------MVT-------- 203 (692)
T ss_dssp EEEEEEEEEEC---------------------------------------------------------------------
T ss_pred EEEeccccccC-CCC---cchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCce------Eec--------
Confidence 99999987652 223 4665544321 2347888899999999999999999999998641 010
Q ss_pred ccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEee
Q 038881 206 AKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVC 285 (794)
Q Consensus 206 ~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~ 285 (794)
.+.+..+. ++. .....+.|.+||||||||||+|+. .||||+|+|+++|++
T Consensus 204 -----------~~~~~~d~---dg~--~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl 253 (692)
T 2p4e_P 204 -----------DFENVPEE---DGT--RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVL 253 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------ccccccCC---CCC--cccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEee
Confidence 00111000 000 001245689999999999999874 699999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHhHhC------CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-
Q 038881 286 WPPVTGNECYDADILAAFDMAIHD------GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV- 358 (794)
Q Consensus 286 ~~~~~G~~~~~~~i~~ai~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~- 358 (794)
++. | .++.+++++||+|++++ +++|||||||+.. ...+..++.++.++|++||+||||+|.+....
T Consensus 254 ~~~--G-~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~s 326 (692)
T 2p4e_P 254 NCQ--G-KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYS 326 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCC--C-CCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccC
Confidence 876 4 46888999999999986 8999999999863 34566667788999999999999999876544
Q ss_pred CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccc
Q 038881 359 SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKG 438 (794)
Q Consensus 359 ~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 438 (794)
+...|++|+|||++.+...
T Consensus 327 PA~~~~vItVGA~d~~~~~------------------------------------------------------------- 345 (692)
T 2p4e_P 327 PASAPEVITVGATNAQDQP------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCEEEEEEEcCCCCc-------------------------------------------------------------
Confidence 4578999999997543200
Q ss_pred eEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeee
Q 038881 439 KILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTEL 518 (794)
Q Consensus 439 kivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 518 (794)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhh
Q 038881 519 GLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL 598 (794)
Q Consensus 519 ~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 598 (794)
...-+.||+|||.+ ||+|||++|+|+++... ..|..++|||||||||||++|||+|+
T Consensus 346 ----a~~ss~fSn~G~~v--------DI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~ 402 (692)
T 2p4e_P 346 ----VTLGTLGTNFGRCV--------DLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSA 402 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cccccccCCCCCce--------eEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHH
Confidence 00112389999854 99999999999987631 37899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCccccCCCccccc-----CCC----CCCCCCcccccc--cccccccC
Q 038881 599 HPEWSPAAIKSAIMTTASIQDNNKGQILN-----ASS----YKATPFSYGAGH--IQPNLAMD 650 (794)
Q Consensus 599 ~p~lsp~~ik~~L~~TA~~~~~~g~~~~~-----~~~----~~~~~~~~G~G~--vn~~~Al~ 650 (794)
+|+|+|++||++|++||.+..-...++.. ..+ .+.....+|+|+ .++..+..
T Consensus 403 ~P~ltp~qVk~~L~~tA~~~~~~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 403 EPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHhccccccCCCCCccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence 99999999999999999764322111100 001 011345578888 77776654
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=495.57 Aligned_cols=391 Identities=21% Similarity=0.293 Sum_probs=282.1
Q ss_pred ccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 144 FLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
.|+++++. +..+|..+ |+||+|||||||||++||+|.++ ++..+++...
T Consensus 5 ~W~l~~i~---~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~~~~~~~~ 53 (441)
T 1y9z_A 5 PWGQTFVG---ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT 53 (441)
T ss_dssp CHHHHHTT---CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS
T ss_pred CCChhhcC---hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC--------------------------cccCcccCCC
Confidence 35666554 56889864 77999999999999999999753 1111122110
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCc--eEEEEEeecCCCCCCCCChHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKA--RVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A--~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
.+...+.|..||||||||||++... +..+.||||+| +|+.+|+++.. | .+..+++++
T Consensus 54 ---------~~~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAP~a~~~l~~~kv~~~~--g-~~~~~~~~~ 112 (441)
T 1y9z_A 54 ---------GNWYQPGNNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEA--G-WGYSSSLVA 112 (441)
T ss_dssp ---------CCTTCCCSSCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETT--E-ECCSSCHHH
T ss_pred ---------CCCCCCCCCCCcHHHHHHHHhcccC---------CCCceEecCCCCCEEEEEEEeCCC--C-CcCHHHHHH
Confidence 0123466889999999999999751 22358999995 99999999876 3 467889999
Q ss_pred HHHHhHhC-CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccce
Q 038881 302 AFDMAIHD-GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSY 380 (794)
Q Consensus 302 ai~~a~~~-g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~ 380 (794)
||+||+++ |++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+.....+
T Consensus 113 ai~~a~~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~ 189 (441)
T 1y9z_A 113 AIDTCVNSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAF 189 (441)
T ss_dssp HHHHHHHTTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTT
T ss_pred HHHHHHHhcCCcEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCcc
Confidence 99999999 9999999999873 2345677888899999999999999998877778888999999999887654333
Q ss_pred EEecCCe-----------------------EEeeeecCCCCC-CCCceec--eEEccchhhcccchhhccccCCC--CCC
Q 038881 381 VVVSNNK-----------------------RYKGQSLSSKGL-PSNKLFP--LISAADAKAANASTEVALLCEAG--TLD 432 (794)
Q Consensus 381 ~~~~~~~-----------------------~~~g~~~~~~~~-~~~~~~p--lv~~~~~~~~~~~~~~~~~c~~~--~~~ 432 (794)
...+... .+.|.+++.... +....++ +.+..... ..........|... .++
T Consensus 190 S~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~~~ 268 (441)
T 1y9z_A 190 SQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTSFS 268 (441)
T ss_dssp SCCCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTEEE
T ss_pred ccCCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhcccccccccc
Confidence 2222211 122222221100 0000000 11111100 00001123457654 567
Q ss_pred CCCccceEEEEecCCc-----hhhhHHHHHHHcCceEEEEeccCCCCcc------ccCCCCcccEEEEeccchHHHHHHH
Q 038881 433 PKKVKGKILVCLRGDN-----ARIDKGQQALLAGAVGMVLANAQENGNE------LLADPHLLPASHINFTDGADLFRDV 501 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~-----~~~~~~~~~~~~Ga~gvi~~n~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~~~ 501 (794)
..+++|||++|+|+.| .+.+|..+++++|+.++|++|+...... .......+|.++++..+|+.|++++
T Consensus 269 ~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~ 348 (441)
T 1y9z_A 269 CGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKL 348 (441)
T ss_dssp CCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTT
T ss_pred CCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHh
Confidence 8899999999999876 7889999999999999999998642111 1223467999999999999999877
Q ss_pred hcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccc
Q 038881 502 NSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGT 581 (794)
Q Consensus 502 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGT 581 (794)
.+. . .+ ++... +.|..+|||
T Consensus 349 ~~~----~-----------------------------------t~--------~~~~~-------------~~y~~~sGT 368 (441)
T 1y9z_A 349 GQS----T-----------------------------------TV--------SNQGN-------------QDYEYYNGT 368 (441)
T ss_dssp TSE----E-----------------------------------EE--------EEEEE-------------ESEEEECSH
T ss_pred cCC----c-----------------------------------cc--------ccccC-------------CCceeeccc
Confidence 431 1 01 11111 389999999
Q ss_pred cchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccCCCccccCCchh
Q 038881 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTEND 661 (794)
Q Consensus 582 SmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~ 661 (794)
|||||||||++|||+|+||+|+|++||++||+||++++..+ ++.+||+|+||+.+|+ |
T Consensus 369 SmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~-----------~ 426 (441)
T 1y9z_A 369 SMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAK-----------A 426 (441)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHH-----------H
T ss_pred ccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHH-----------H
Confidence 99999999999999999999999999999999999886543 3567999999999996 5
Q ss_pred hhhhhhcCCCC
Q 038881 662 YLNFLCALGYN 672 (794)
Q Consensus 662 ~~~~~~~~~~~ 672 (794)
|+.|||++++.
T Consensus 427 ~~~~lc~~~~~ 437 (441)
T 1y9z_A 427 YLDESCTGPTD 437 (441)
T ss_dssp HHHHCTTCC--
T ss_pred HHHhhhcCCCC
Confidence 99999998854
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=441.98 Aligned_cols=265 Identities=28% Similarity=0.418 Sum_probs=224.8
Q ss_pred ccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 144 FLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
.|++..+. +..+|..+++|+||+|+|||||| .+||+|+ +...++|..+
T Consensus 5 ~W~l~~i~---~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~----------------------------~~~~~~~~~~ 52 (269)
T 1gci_A 5 PWGISRVQ---APAAHNRGLTGSGVKVAVLDTGI-STHPDLN----------------------------IRGGASFVPG 52 (269)
T ss_dssp CHHHHHTT---HHHHHHTTCSCTTCEEEEEESCC-CCCTTCC----------------------------EEEEEECSTT
T ss_pred CcChhhcC---cHHHHhcCCCCCCCEEEEECCCC-CCCHhhc----------------------------ccCCcccCCC
Confidence 35665544 67899999999999999999999 8999994 2233455432
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
.....|..||||||||||+|.. +...+.||||+|+|+.+|+++.. | .+..+++++||
T Consensus 53 -----------~~~~~d~~gHGT~vAgiia~~~---------~~~~~~GvAp~a~l~~~~v~~~~--g-~~~~~~~~~ai 109 (269)
T 1gci_A 53 -----------EPSTQDGNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGAS--G-SGSVSSIAQGL 109 (269)
T ss_dssp -----------CCSCSCSSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTT--S-CBCHHHHHHHH
T ss_pred -----------CCCCCCCCCChHHHHHHHhcCc---------CCCCcEEeCCCCEEEEEEeECCC--C-CcCHHHHHHHH
Confidence 2235688999999999999863 12235899999999999999876 3 46889999999
Q ss_pred HHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEe
Q 038881 304 DMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVV 383 (794)
Q Consensus 304 ~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~ 383 (794)
+|+++++++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 110 ~~a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------- 177 (269)
T 1gci_A 110 EWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------- 177 (269)
T ss_dssp HHHHHTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------
T ss_pred HHHHHCCCeEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC---------
Confidence 9999999999999999873 2456778888999999999999999998877777788999999986432
Q ss_pred cCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCce
Q 038881 384 SNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAV 463 (794)
Q Consensus 384 ~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 463 (794)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCccc
Q 038881 464 GMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILK 543 (794)
Q Consensus 464 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 543 (794)
+.++.||++||.+
T Consensus 178 ------------------------------------------------------------~~~~~~S~~G~~~------- 190 (269)
T 1gci_A 178 ------------------------------------------------------------NNRASFSQYGAGL------- 190 (269)
T ss_dssp ------------------------------------------------------------SCBCTTCCCSTTE-------
T ss_pred ------------------------------------------------------------CCCCCCCCCCCCc-------
Confidence 3678999999976
Q ss_pred CceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCc
Q 038881 544 PDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKG 623 (794)
Q Consensus 544 PDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~ 623 (794)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 191 -di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---- 252 (269)
T 1gci_A 191 -DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---- 252 (269)
T ss_dssp -EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----
T ss_pred -ceEecCCCeEeecCC-------------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----
Confidence 999999999999876 47999999999999999999999999999999999999999999862
Q ss_pred ccccCCCCCCCCCcccccccccccccC
Q 038881 624 QILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 624 ~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
++..||+|+||+.+|++
T Consensus 253 ----------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 ----------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp ----------CHHHHTTCBCCHHHHTC
T ss_pred ----------CCCCcccCccCHHHHcC
Confidence 35689999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=444.90 Aligned_cols=265 Identities=28% Similarity=0.430 Sum_probs=222.4
Q ss_pred cccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccccc
Q 038881 145 LGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY 224 (794)
Q Consensus 145 ~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~ 224 (794)
|+++.+. +..+|..+++|+||+|+|||||||++||+|+ +..+++|..+
T Consensus 6 w~l~~i~---~~~~~~~g~~G~gv~VaViDtGid~~h~~l~----------------------------~~~g~~~~~~- 53 (274)
T 1r0r_E 6 YGIPLIK---ADKVQAQGFKGANVKVAVLDTGIQASHPDLN----------------------------VVGGASFVAG- 53 (274)
T ss_dssp THHHHTT---HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC----------------------------EEEEEECSTT-
T ss_pred CchhhcC---CHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc----------------------------CCCCccccCC-
Confidence 4655543 6789999999999999999999999999994 2233445432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHH
Q 038881 225 AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFD 304 (794)
Q Consensus 225 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~ 304 (794)
.....|..||||||||||++.. +...+.||||+|+|+.+|+++.. | .+..+++++||+
T Consensus 54 ----------~~~~~d~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~~v~~~~--g-~~~~~~i~~ai~ 111 (274)
T 1r0r_E 54 ----------EAYNTDGNGHGTHVAGTVAALD---------NTTGVLGVAPSVSLYAVKVLNSS--G-SGSYSGIVSGIE 111 (274)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCS---------SSSBCCCSSTTSEEEEEECSCTT--S-EECHHHHHHHHH
T ss_pred ----------CCCCCCCCCCHHHHHHHHHccC---------CCCceEEECCCCEEEEEEEECCC--C-CccHHHHHHHHH
Confidence 1235678999999999999863 12335899999999999999876 3 468889999999
Q ss_pred HhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcCCCCCceEEeccccCCCCccce
Q 038881 305 MAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD----STVSNIAPWQITVGASTMDRDFPSY 380 (794)
Q Consensus 305 ~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~ap~vitVgAs~~~~~~~~~ 380 (794)
|+++++++|||||||... ....+..++.++.++|++||+||||+|... ..++...+++|+|||++.+
T Consensus 112 ~a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~------ 182 (274)
T 1r0r_E 112 WATTNGMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------ 182 (274)
T ss_dssp HHHHTTCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT------
T ss_pred HHHHcCCCEEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC------
Confidence 999999999999999873 245678888899999999999999999763 3345567899999986432
Q ss_pred EEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHc
Q 038881 381 VVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLA 460 (794)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 460 (794)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCC
Q 038881 461 GAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPE 540 (794)
Q Consensus 461 Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 540 (794)
+.++.||++||.+
T Consensus 183 ---------------------------------------------------------------~~~~~~S~~G~~~---- 195 (274)
T 1r0r_E 183 ---------------------------------------------------------------SNRASFSSVGAEL---- 195 (274)
T ss_dssp ---------------------------------------------------------------SCBCTTCCCSTTE----
T ss_pred ---------------------------------------------------------------CCcCccCCCCCCc----
Confidence 3678999999865
Q ss_pred cccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccC
Q 038881 541 ILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDN 620 (794)
Q Consensus 541 ~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~ 620 (794)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 196 ----di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g- 257 (274)
T 1r0r_E 196 ----EVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG- 257 (274)
T ss_dssp ----EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-
T ss_pred ----eEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC-
Confidence 999999999999876 47999999999999999999999999999999999999999999862
Q ss_pred CCcccccCCCCCCCCCcccccccccccccC
Q 038881 621 NKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 621 ~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
++..||+|+||+.+|++
T Consensus 258 -------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 -------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -------------CHHHHTTCBCCHHHHTC
T ss_pred -------------CCCCcccCccCHHHHhC
Confidence 35689999999999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-52 Score=440.32 Aligned_cols=268 Identities=27% Similarity=0.331 Sum_probs=219.1
Q ss_pred ccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 144 FLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
+|++..+. +..+|+.+..|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 12 ~w~l~~i~---~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~--------------------------~~~~~~~~~~ 62 (280)
T 1dbi_A 12 QYGPQNTY---TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN 62 (280)
T ss_dssp CCTTGGGT---HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT
T ss_pred CCChhhcC---cHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC--------------------------cccceeccCC
Confidence 45665543 678999988888999999999999999999743 4455566543
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
..++.|..||||||||||+|...+ ...+.||||+|+|+.+|+++.+ | .+..+++++||
T Consensus 63 -----------~~~~~d~~gHGT~vAgiia~~~~~--------~~g~~GvAp~a~l~~~kv~~~~--g-~~~~~~i~~ai 120 (280)
T 1dbi_A 63 -----------DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRN--G-SGTLSDIADAI 120 (280)
T ss_dssp -----------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTT--S-CCCHHHHHHHH
T ss_pred -----------CCCCCCCCCcHHHHHHHHhCcCCC--------CCcceEeCCCCEEEEEEEECCC--C-CcCHHHHHHHH
Confidence 234578899999999999987521 2235899999999999999876 4 47889999999
Q ss_pred HHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEe
Q 038881 304 DMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVV 383 (794)
Q Consensus 304 ~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~ 383 (794)
+|+++++++|||||||... ....+..++.++.++|++||+||||+|......+...+++|+|||++.+
T Consensus 121 ~~a~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------- 188 (280)
T 1dbi_A 121 IYAADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--------- 188 (280)
T ss_dssp HHHHHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---------
T ss_pred HHHHHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC---------
Confidence 9999999999999999862 3456788888999999999999999998766677788999999986432
Q ss_pred cCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCce
Q 038881 384 SNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAV 463 (794)
Q Consensus 384 ~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 463 (794)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCccc
Q 038881 464 GMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILK 543 (794)
Q Consensus 464 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 543 (794)
+.++.||++||.+
T Consensus 189 ------------------------------------------------------------~~~~~~S~~G~~~------- 201 (280)
T 1dbi_A 189 ------------------------------------------------------------DRLASFSNYGTWV------- 201 (280)
T ss_dssp ------------------------------------------------------------SCBCTTBCCSTTC-------
T ss_pred ------------------------------------------------------------CCcCCCCCCCCCc-------
Confidence 3678999999876
Q ss_pred CceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCc
Q 038881 544 PDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKG 623 (794)
Q Consensus 544 PDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~ 623 (794)
||+|||++|+++++. +.|..++|||||||||||++|||++ |.+++.+||++|++||+++...
T Consensus 202 -dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~-- 263 (280)
T 1dbi_A 202 -DVVAPGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT-- 263 (280)
T ss_dssp -CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB--
T ss_pred -eEEEecCCeEeecCC-------------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC--
Confidence 999999999999875 4899999999999999999999987 8999999999999999987421
Q ss_pred ccccCCCCCCCCCcccccccccccccC
Q 038881 624 QILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 624 ~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
...||+|+||+.+|++
T Consensus 264 -----------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 264 -----------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----------TTTBSSEECCHHHHHT
T ss_pred -----------CCcccCCEECHHHHhc
Confidence 3579999999999986
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-52 Score=441.74 Aligned_cols=268 Identities=28% Similarity=0.409 Sum_probs=223.4
Q ss_pred ccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 144 FLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
.|+++.+. +..+|..+++|+||+|||||||||++||+|+. ..+++|..+
T Consensus 5 ~w~l~~i~---~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----------------------------~~g~~~~~~ 53 (281)
T 1to2_E 5 PYGVSQIK---APALHSQGYTGSNVKVAVIDSGIDSSHPDLKV----------------------------AGGASMVPS 53 (281)
T ss_dssp CHHHHHTT---HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECCTT
T ss_pred CcchhhcC---hHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC----------------------------cCCccccCC
Confidence 35665544 67899999999999999999999999999942 223344332
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
+.....|..||||||||||+|.. +...+.||||+|+|+.+|+++.+ | .+..++++++|
T Consensus 54 ----------~~~~~~d~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~--g-~~~~~~i~~ai 111 (281)
T 1to2_E 54 ----------ETNPFQDNNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGAD--G-SGQYSWIINGI 111 (281)
T ss_dssp ----------CCCTTCCSSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTT--S-EECHHHHHHHH
T ss_pred ----------CCCCCCCCCCcHHHHHHHHhccC---------CCCcceeeCCCCEEEEEEEeCCC--C-CccHHHHHHHH
Confidence 01123678999999999999863 12335899999999999999876 3 46789999999
Q ss_pred HHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcCCCCCceEEeccccCCCCccc
Q 038881 304 DMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD----STVSNIAPWQITVGASTMDRDFPS 379 (794)
Q Consensus 304 ~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~ap~vitVgAs~~~~~~~~ 379 (794)
+|+++++++|||||||... ....+..++.++.++|++||+||||+|... ..++...|++|+|||++.+
T Consensus 112 ~~a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~----- 183 (281)
T 1to2_E 112 EWAIANNMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS----- 183 (281)
T ss_dssp HHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-----
T ss_pred HHHHHCCCcEEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC-----
Confidence 9999999999999999873 245688888899999999999999999763 3345567899999986431
Q ss_pred eEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHH
Q 038881 380 YVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALL 459 (794)
Q Consensus 380 ~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 459 (794)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCC
Q 038881 460 AGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAP 539 (794)
Q Consensus 460 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 539 (794)
+.++.||++||.+
T Consensus 184 ----------------------------------------------------------------~~~~~fS~~G~~~--- 196 (281)
T 1to2_E 184 ----------------------------------------------------------------NQRASFSSVGPEL--- 196 (281)
T ss_dssp ----------------------------------------------------------------SCBCTTCCCSTTC---
T ss_pred ----------------------------------------------------------------CCcCCcCCCCCCc---
Confidence 4678999999976
Q ss_pred CcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcccc
Q 038881 540 EILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQD 619 (794)
Q Consensus 540 ~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~ 619 (794)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|+++|||++|++||+++.
T Consensus 197 -----di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g 258 (281)
T 1to2_E 197 -----DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG 258 (281)
T ss_dssp -----CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS
T ss_pred -----eEEecCCCeEeecCC-------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC
Confidence 999999999999876 47999999999999999999999999999999999999999998862
Q ss_pred CCCcccccCCCCCCCCCcccccccccccccCC
Q 038881 620 NNKGQILNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 620 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
+++.||||+||+.+|++.
T Consensus 259 --------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 --------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --------------CHHHHTTCBCCHHHHTSS
T ss_pred --------------CCCCcccceecHHHHhhh
Confidence 356899999999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=452.50 Aligned_cols=274 Identities=27% Similarity=0.390 Sum_probs=223.1
Q ss_pred cccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccc
Q 038881 143 EFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNK 222 (794)
Q Consensus 143 ~~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~ 222 (794)
..|+++.+. +..+|..+++|+||+|||||||||++||+|.++ ++.+++|..
T Consensus 21 ~~w~l~~i~---~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~ 71 (327)
T 2x8j_A 21 VPMGVEIVE---APAVWRASAKGAGQIIGVIDTGCQVDHPDLAER--------------------------IIGGVNLTT 71 (327)
T ss_dssp CCHHHHHTT---HHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG--------------------------EEEEEECSS
T ss_pred cCcchhhcC---hHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc--------------------------ccCCccccC
Confidence 345666554 678999999999999999999999999999742 455566665
Q ss_pred cc-ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH
Q 038881 223 GY-AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 223 ~~-~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
++ .. .....|..||||||||||+|.. .+..+.||||+|+|+.+|+++.. | .+..+++++
T Consensus 72 ~~~~~--------~~~~~d~~gHGT~VAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~--g-~~~~~~i~~ 131 (327)
T 2x8j_A 72 DYGGD--------ETNFSDNNGHGTHVAGTVAAAE---------TGSGVVGVAPKADLFIIKALSGD--G-SGEMGWIAK 131 (327)
T ss_dssp GGGGC--------TTCCCCSSSHHHHHHHHHHCCC---------CSSBCCCSSTTCEEEEEECSCTT--S-EECHHHHHH
T ss_pred CCCCC--------CCCCCCCCCchHHHHHHHhccC---------CCCCcEeeCCCCEEEEEEeECCC--C-CcCHHHHHH
Confidence 43 11 2235688999999999999974 12335899999999999999876 3 467899999
Q ss_pred HHHHhHh------CCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-----CCcCCCCCceEEecc
Q 038881 302 AFDMAIH------DGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD-----STVSNIAPWQITVGA 370 (794)
Q Consensus 302 ai~~a~~------~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-----~~~~~~ap~vitVgA 370 (794)
||+||++ .+++|||||||... ....+..++..+.++|++||+||||+|... ..++...+++|+|||
T Consensus 132 ai~~a~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga 208 (327)
T 2x8j_A 132 AIRYAVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGA 208 (327)
T ss_dssp HHHHHHHCCCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEE
T ss_pred HHHHHHhhcccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEE
Confidence 9999999 89999999999873 245677888899999999999999999752 344557799999998
Q ss_pred ccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchh
Q 038881 371 STMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNAR 450 (794)
Q Consensus 371 s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 450 (794)
++.+
T Consensus 209 ~~~~---------------------------------------------------------------------------- 212 (327)
T 2x8j_A 209 VDFD---------------------------------------------------------------------------- 212 (327)
T ss_dssp ECTT----------------------------------------------------------------------------
T ss_pred ECCC----------------------------------------------------------------------------
Confidence 6432
Q ss_pred hhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCcccccc
Q 038881 451 IDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFS 530 (794)
Q Consensus 451 ~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 530 (794)
+.++.||
T Consensus 213 -------------------------------------------------------------------------~~~~~fS 219 (327)
T 2x8j_A 213 -------------------------------------------------------------------------LRLSDFT 219 (327)
T ss_dssp -------------------------------------------------------------------------CCBSCC-
T ss_pred -------------------------------------------------------------------------CCCCCcc
Confidence 4678999
Q ss_pred CCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhh-----CCCCCHH
Q 038881 531 SKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL-----HPEWSPA 605 (794)
Q Consensus 531 S~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~lsp~ 605 (794)
++||.+ ||+|||++|+++++. +.|..++|||||||||||++|||+|+ +|.|++.
T Consensus 220 ~~G~~~--------di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~ 278 (327)
T 2x8j_A 220 NTNEEI--------DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSET 278 (327)
T ss_dssp --CCCC--------SEEEECSSEEEECST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred CCCCCc--------eEecCcCceEeecCC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence 999865 999999999999875 47999999999999999999999999 9999999
Q ss_pred HHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccCC
Q 038881 606 AIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 606 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
+||++|++||+++. .++..+|+|+||+.+|++.
T Consensus 279 ~v~~~L~~tA~~~g-------------~~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 279 EIYAQLVRRATPIG-------------FTAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp HHHHHHHTTEECCS-------------SCHHHHTTCEECTTHHHHH
T ss_pred HHHHHHHHhCccCC-------------CCCCceeeeEECHHHHHHh
Confidence 99999999999862 2467899999999999973
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-53 Score=465.51 Aligned_cols=306 Identities=18% Similarity=0.192 Sum_probs=200.7
Q ss_pred cccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCcccccccccc----ceeecccccccccCCC
Q 038881 156 NSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLI----GARYFNKGYAAAVGPL 231 (794)
Q Consensus 156 ~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~----g~~~~~~~~~~~~~~~ 231 (794)
..+|..+..|+||+|||||||||++||+|++....+....|...++.........+..+. ..+.+.... ...
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 96 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEAL----EAV 96 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHH----HHH
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcccccccccccc----ccc
Confidence 489999999999999999999999999999876666667777655433210000000000 000000000 000
Q ss_pred CCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCC--CCCCChHHHHHHHHHhHhC
Q 038881 232 NSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVT--GNECYDADILAAFDMAIHD 309 (794)
Q Consensus 232 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~--G~~~~~~~i~~ai~~a~~~ 309 (794)
.++..++.|.+||||||||||+|+. ++.+.||||+|+|+.+|++..... ...+...++++||+++++.
T Consensus 97 ~~~~~~~~D~~gHGThVAGiiag~~----------~~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~ 166 (357)
T 4h6x_A 97 IPDTKDRIVLNDHACHVTSTIVGQE----------HSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALEL 166 (357)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHCCT----------TSSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHT
T ss_pred cCCCCCCcCCCCcHHHHHHHHhccC----------CCCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHc
Confidence 0112234567899999999999974 224589999999999999754310 0024556789999999999
Q ss_pred CceEEEEccCCCC-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeE
Q 038881 310 GVDVLSVSLGGGP-SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKR 388 (794)
Q Consensus 310 g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~ 388 (794)
|++|||||||... .....+.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 167 g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------- 232 (357)
T 4h6x_A 167 GANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD-------------- 232 (357)
T ss_dssp TCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT--------------
T ss_pred CCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC--------------
Confidence 9999999999873 3345667888888999999999999999998877777888999999986432
Q ss_pred EeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEe
Q 038881 389 YKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLA 468 (794)
Q Consensus 389 ~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 468 (794)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEe
Q 038881 469 NAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITA 548 (794)
Q Consensus 469 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 548 (794)
+.++.||+||+.. .||||+|
T Consensus 233 -------------------------------------------------------~~~~~fSn~G~~~-----~~~di~A 252 (357)
T 4h6x_A 233 -------------------------------------------------------GTPCHFSNWGGNN-----TKEGILA 252 (357)
T ss_dssp -------------------------------------------------------SSBCTTCC---CT-----TTTEEEE
T ss_pred -------------------------------------------------------CcccccccCCCCC-----Cccceee
Confidence 4788999999753 5899999
Q ss_pred CCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCccccCCCcc
Q 038881 549 PGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL----HPEWSPAAIKSAIMTTASIQDNNKGQ 624 (794)
Q Consensus 549 PG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~ik~~L~~TA~~~~~~g~~ 624 (794)
||++|+++++.. +.|..++|||||||||||++|||+++ +|.|+++|||++|++||++++...
T Consensus 253 PG~~i~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~-- 318 (357)
T 4h6x_A 253 PGEEILGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV-- 318 (357)
T ss_dssp ECSSEEECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------
T ss_pred cCCCeEeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC--
Confidence 999999998763 36778999999999999999999954 668999999999999999875322
Q ss_pred cccCCCCCCCCCcccccccccccccC
Q 038881 625 ILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 625 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
...+.+||+|+||+.+|++
T Consensus 319 -------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 319 -------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp -------------CTTCBCCHHHHHH
T ss_pred -------CCCcccceeEEecHHHHHH
Confidence 2346789999999999997
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=434.26 Aligned_cols=267 Identities=28% Similarity=0.405 Sum_probs=224.9
Q ss_pred ccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 144 FLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
+|++..+. +..+|+.. +|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 12 ~w~l~~i~---~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~ 61 (279)
T 1thm_A 12 QYGPQKIQ---APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN 61 (279)
T ss_dssp CCHHHHTT---HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT
T ss_pred ccChhhCC---hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC--------------------------ccccccccCC
Confidence 45565543 67899886 799999999999999999999743 4455666543
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
...+.|..||||||||||+|...+ ...+.||||+|+|+.+|+++.. | .++.+++++||
T Consensus 62 -----------~~~~~d~~gHGT~vAgiia~~~~n--------~~g~~GvAp~a~l~~~~v~~~~--g-~~~~~~~~~ai 119 (279)
T 1thm_A 62 -----------DSTPQNGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNS--G-SGTWTAVANGI 119 (279)
T ss_dssp -----------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTT--S-CCCHHHHHHHH
T ss_pred -----------CCCCCCCCCcHHHHHHHHhCccCC--------CCccEEeCCCCEEEEEEeeCCC--C-CccHHHHHHHH
Confidence 234578899999999999997522 2235899999999999999876 3 46888999999
Q ss_pred HHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEe
Q 038881 304 DMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVV 383 (794)
Q Consensus 304 ~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~ 383 (794)
+||++++++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 120 ~~a~~~g~~Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------- 187 (279)
T 1thm_A 120 TYAADQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------- 187 (279)
T ss_dssp HHHHHTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------
T ss_pred HHHHHCCCCEEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC---------
Confidence 9999999999999999873 3456788888999999999999999998777777888999999986432
Q ss_pred cCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCce
Q 038881 384 SNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAV 463 (794)
Q Consensus 384 ~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 463 (794)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCccc
Q 038881 464 GMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILK 543 (794)
Q Consensus 464 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 543 (794)
+.++.||++||.+
T Consensus 188 ------------------------------------------------------------~~~~~fS~~G~~~------- 200 (279)
T 1thm_A 188 ------------------------------------------------------------DNKSSFSTYGSWV------- 200 (279)
T ss_dssp ------------------------------------------------------------SCBCTTCCCCTTC-------
T ss_pred ------------------------------------------------------------CCcCCcCCCCCce-------
Confidence 3678999999876
Q ss_pred CceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCc
Q 038881 544 PDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKG 623 (794)
Q Consensus 544 PDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~ 623 (794)
||+|||++|+++++. +.|..++|||||||||||++||| ++|.+++++||++|++||+++...
T Consensus 201 -dv~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-- 262 (279)
T 1thm_A 201 -DVAAPGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-- 262 (279)
T ss_dssp -CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB--
T ss_pred -EEEEcCCCeEEEeCC-------------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC--
Confidence 999999999999876 47999999999999999999999 579999999999999999987432
Q ss_pred ccccCCCCCCCCCcccccccccccccC
Q 038881 624 QILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 624 ~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
...||+|+||+.+|++
T Consensus 263 -----------~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 263 -----------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -----------TTTBSSEECCHHHHHH
T ss_pred -----------CccccCCeeCHHHHhc
Confidence 2469999999999985
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=433.39 Aligned_cols=290 Identities=27% Similarity=0.342 Sum_probs=228.3
Q ss_pred ccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 144 FLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
.|++..+. +..+|..+++|+||+|||||||||++||+|.++ +...++|...
T Consensus 7 ~W~l~~i~---~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~--------------------------~~~~~~~~~~ 57 (310)
T 2ixt_A 7 PWGIKAIY---NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGA 57 (310)
T ss_dssp CHHHHHHH---TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSS
T ss_pred CCchhhcC---chhhhhccCCCCCcEEEEEecCCCCCCHHHhhc--------------------------ccccccccCC
Confidence 34555443 678999999999999999999999999999753 3344555532
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
. +.......|..||||||||||++.... +...+.||||+|+|+.+|+++.. | .+..+++++||
T Consensus 58 ~-------~~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~--g-~~~~~~~~~ai 120 (310)
T 2ixt_A 58 T-------TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS--G-SGYSDDIAAAI 120 (310)
T ss_dssp S-------SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT--S-CCCHHHHHHHH
T ss_pred C-------CCCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCC--C-CCcHHHHHHHH
Confidence 1 000123568899999999999987411 22345899999999999999876 3 46889999999
Q ss_pred HHhHhCCc-----eEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC--CCcCCCCCceEEeccccCCCC
Q 038881 304 DMAIHDGV-----DVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD--STVSNIAPWQITVGASTMDRD 376 (794)
Q Consensus 304 ~~a~~~g~-----dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~--~~~~~~ap~vitVgAs~~~~~ 376 (794)
+|++++++ +|||||||... ....+..++.++.++|++||+||||+|... ..++...+++|+|||++...
T Consensus 121 ~~a~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~- 196 (310)
T 2ixt_A 121 RHAADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ- 196 (310)
T ss_dssp HHHHHHHHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-
T ss_pred HHHHHhhhccCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-
Confidence 99999888 99999999873 245677888889999999999999999763 34556779999999864210
Q ss_pred ccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHH
Q 038881 377 FPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQ 456 (794)
Q Consensus 377 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 456 (794)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCC--ccccccCCCC
Q 038881 457 ALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAP--IMAAFSSKGP 534 (794)
Q Consensus 457 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~Gp 534 (794)
..+ .++.||++||
T Consensus 197 -----------------------------------------------------------------~~g~~~~~~~S~~G~ 211 (310)
T 2ixt_A 197 -----------------------------------------------------------------QNGTYRVADYSSRGY 211 (310)
T ss_dssp -----------------------------------------------------------------ETTEEEECTTSCCCC
T ss_pred -----------------------------------------------------------------cCCCeeeccccCCCC
Confidence 012 6788999999
Q ss_pred CCCC----CCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 038881 535 SSVA----PEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSA 610 (794)
Q Consensus 535 ~~~~----~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 610 (794)
.... ..+.||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++++||++
T Consensus 212 ~~~~g~~~~~~~~~di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~ 278 (310)
T 2ixt_A 212 ISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSN 278 (310)
T ss_dssp TTTTTSSSCCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred ccCCccccccCCCeeEECCCCCEeeecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 5321 134599999999999999875 48999999999999999999999999999999999999
Q ss_pred HHhcCccccCCCcccccCCCCCCCCCccccccccc
Q 038881 611 IMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645 (794)
Q Consensus 611 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 645 (794)
|++||++++..+. .......+..+|||++|+
T Consensus 279 L~~tA~~~~~~~~----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 279 LQERAKSVDIKGG----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp HHHHHHTSCCCBS----TTCCSSSBTTTBTCBCCC
T ss_pred HHhhCcccCCCCC----cccccCCccccccceeec
Confidence 9999998764321 112355678999999986
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-51 Score=434.82 Aligned_cols=266 Identities=20% Similarity=0.191 Sum_probs=212.1
Q ss_pred cCCC-CceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCC
Q 038881 162 ARYG-EDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRD 240 (794)
Q Consensus 162 g~~G-~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d 240 (794)
..+| +||+|||||||||++||+|.++ .+..+.+... .......|
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~---------~~~~~d~~ 47 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA--------------------------DLTVLPTLAP---------TAARSDGF 47 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC--------------------------EEEECCCSSC---------CCCCTTCH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC--------------------------eeecCcCCCC---------CCCCCCCC
Confidence 3578 7999999999999999999754 1111122211 00122335
Q ss_pred CCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCC
Q 038881 241 KDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGG 320 (794)
Q Consensus 241 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~ 320 (794)
.+||||||||||+|+. +..+.||||+|+|+.+|++.+... .....++++||+||++++++|||||||.
T Consensus 48 ~~gHGT~VAGiiag~~----------~~~~~GvAp~a~l~~~kv~~~~~~--~~~~~~i~~ai~~a~~~~~~Vin~S~G~ 115 (282)
T 3zxy_A 48 MSAHGTHVASIIFGQP----------ETSVPGIAPQCRGLIVPIFSDDRR--RITQLDLARGIERAVNAGAHIINISGGE 115 (282)
T ss_dssp HHHHHHHHHHHHHCCT----------TSSSCCSSTTSEEEEEECSCSSSS--CCCHHHHHHHHHHHHHTTCSEEEECCCE
T ss_pred CCCcccceeehhhccC----------CceeeeeccccceEeeEeeccccc--cchHHHHHHHHHHhhccCCeEEeccCcc
Confidence 6799999999999874 223589999999999999876532 4678899999999999999999999997
Q ss_pred CC-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCC
Q 038881 321 GP-SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGL 399 (794)
Q Consensus 321 ~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 399 (794)
.. .......+..++..+.++|+++|+||||+|......+...+++|+|||++.+
T Consensus 116 ~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------- 170 (282)
T 3zxy_A 116 LTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH------------------------- 170 (282)
T ss_dssp EESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-------------------------
T ss_pred ccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-------------------------
Confidence 63 2234455777888899999999999999998877777788999999986432
Q ss_pred CCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccC
Q 038881 400 PSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLA 479 (794)
Q Consensus 400 ~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~ 479 (794)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecC
Q 038881 480 DPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTE 559 (794)
Q Consensus 480 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~ 559 (794)
+.++.||+||+. ..||||+|||++|+++++.
T Consensus 171 --------------------------------------------~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~ 201 (282)
T 3zxy_A 171 --------------------------------------------GHPLDFSNWGST-----YEQQGILAPGEDILGAKPG 201 (282)
T ss_dssp --------------------------------------------SCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT
T ss_pred --------------------------------------------CccccccCCCCC-----ccccceeccCcceeeecCC
Confidence 467889999864 3688999999999999876
Q ss_pred CCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC----CCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCC
Q 038881 560 AAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH----PEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATP 635 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 635 (794)
+.|..++|||||||||||++|||+|++ |.++|+|||++|++||++++.. .+...
T Consensus 202 -------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~---------~~~~~ 259 (282)
T 3zxy_A 202 -------------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD---------APEQA 259 (282)
T ss_dssp -------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------------C
T ss_pred -------------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC---------CCCcc
Confidence 489999999999999999999999874 7899999999999999886432 13345
Q ss_pred CcccccccccccccC
Q 038881 636 FSYGAGHIQPNLAMD 650 (794)
Q Consensus 636 ~~~G~G~vn~~~Al~ 650 (794)
..+|+|+||+.+|++
T Consensus 260 ~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 260 RRCLAGRLNVSGAFT 274 (282)
T ss_dssp GGGTTCBCCHHHHHH
T ss_pred CceeeeEeCHHHHHH
Confidence 689999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-51 Score=440.61 Aligned_cols=274 Identities=27% Similarity=0.412 Sum_probs=225.0
Q ss_pred ccccccCCCccccccccccCCCC--ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecc
Q 038881 144 FLGLERNGRVESNSIWKKARYGE--DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFN 221 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~--GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~ 221 (794)
.|++..+. +..+|+.+ +|+ ||+|||||||||++||+|.++ +...++|.
T Consensus 9 ~W~l~~i~---~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~ 58 (320)
T 2z30_A 9 PWGIERVK---APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------------------------IAWCVSTL 58 (320)
T ss_dssp CHHHHHTT---CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG--------------------------EEEEEECG
T ss_pred CCChhhcC---hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc--------------------------cccCcccc
Confidence 45666554 67899988 999 999999999999999999743 33444554
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH
Q 038881 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
.+. ......+..|..||||||||||+|.. ++..+.||||+|+|+.+|+++.. | .+..+++++
T Consensus 59 ~~~------~~~~~~~~~d~~gHGT~vAgiia~~~---------n~~g~~GvAp~a~l~~~~v~~~~--g-~~~~~~i~~ 120 (320)
T 2z30_A 59 RGK------VSTKLRDCADQNGHGTHVIGTIAALN---------NDIGVVGVAPGVQIYSVRVLDAR--G-SGSYSDIAI 120 (320)
T ss_dssp GGC------CBCCHHHHBCSSSHHHHHHHHHHCCS---------SSBSCCCSSTTCEEEEEECSCTT--S-EEEHHHHHH
T ss_pred CCc------cCCCCCCCCCCCCCHHHHHHHHHccc---------CCCceEeeCCCCEEEEEEeeCCC--C-CccHHHHHH
Confidence 331 00001123578999999999999863 12235899999999999999876 4 467899999
Q ss_pred HHHHhHhC--------------------CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCC
Q 038881 302 AFDMAIHD--------------------GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNI 361 (794)
Q Consensus 302 ai~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ 361 (794)
||+||+++ +++|||||||... ....+..++.++.++|++||+||||+|.....++..
T Consensus 121 ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~ 197 (320)
T 2z30_A 121 GIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAA 197 (320)
T ss_dssp HHHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTT
T ss_pred HHHHHHhCcccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCccc
Confidence 99999987 9999999999873 245677788889999999999999999887777788
Q ss_pred CCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEE
Q 038881 362 APWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKIL 441 (794)
Q Consensus 362 ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 441 (794)
.|++|+|||++.+
T Consensus 198 ~~~vi~Vga~~~~------------------------------------------------------------------- 210 (320)
T 2z30_A 198 YPEVIAVGAIDSN------------------------------------------------------------------- 210 (320)
T ss_dssp STTEEEEEEECTT-------------------------------------------------------------------
T ss_pred CCCeEEEEeeCCC-------------------------------------------------------------------
Confidence 8999999986432
Q ss_pred EEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCC
Q 038881 442 VCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLK 521 (794)
Q Consensus 442 l~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 521 (794)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC--
Q 038881 522 PAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH-- 599 (794)
Q Consensus 522 ~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-- 599 (794)
+.++.||++|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 211 --~~~~~~S~~g~----------~v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~ 265 (320)
T 2z30_A 211 --DNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQ 265 (320)
T ss_dssp --SCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcCcccCCCC----------CEEeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchh
Confidence 46789999997 789999999999876 489999999999999999999999998
Q ss_pred -----------CCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccCC
Q 038881 600 -----------PEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 600 -----------p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
|.|++.+||++|++||+++... ..+..||+|+||+.+|++.
T Consensus 266 ~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 266 KYGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcCCceeCHHHHHHH
Confidence 9999999999999999987432 2356899999999999863
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=436.04 Aligned_cols=272 Identities=23% Similarity=0.259 Sum_probs=219.4
Q ss_pred cccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCC
Q 038881 156 NSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSF 235 (794)
Q Consensus 156 ~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 235 (794)
+++|+....++||+|||||||||++||+|.++ .+.+..+|..+ +.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~-------------------------~~~~~~~~~~~----------~~ 55 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA-------------------------DLTRLPSLVSG----------EA 55 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC-------------------------EEEECC-----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC-------------------------cccCCCcccCC----------CC
Confidence 48999987779999999999999999999754 11122223222 01
Q ss_pred CCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEE
Q 038881 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLS 315 (794)
Q Consensus 236 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN 315 (794)
....|.+||||||||||+|+. ++.+.||||+|+|+.+|++.+.. + .+....+++||+||++++++|||
T Consensus 56 ~~~~d~~gHGThVAGiiag~~----------~~~~~GVAp~a~l~~~kv~~~~~-~-~~~~~~i~~ai~~a~~~g~~vi~ 123 (306)
T 4h6w_A 56 NANGSMSTHGTHVASIIFGQH----------DSPVTGIAPQCRGLIVPVFADES-L-KLSQLDLSRAIEQAVNNGANIIN 123 (306)
T ss_dssp ---CCCCHHHHHHHHHHHCCT----------TSSSCCSSTTSEEEECCCCCSSS-C-CCCHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCCCCchHHHHHHHHccc----------cCCcceeccccccceeecccccc-c-cchHHHHHHHHHHhhcccceeee
Confidence 234467899999999999874 23458999999999999987653 2 47888999999999999999999
Q ss_pred EccCCCC-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeec
Q 038881 316 VSLGGGP-SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSL 394 (794)
Q Consensus 316 ~SlG~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 394 (794)
+|||... .......+..++..+.++|++||+||||+|.....++...+++|+|||++..
T Consensus 124 ~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 183 (306)
T 4h6w_A 124 VSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ-------------------- 183 (306)
T ss_dssp ECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT--------------------
T ss_pred ccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC--------------------
Confidence 9999762 2334456778888999999999999999998777777788999999986432
Q ss_pred CCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC
Q 038881 395 SSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG 474 (794)
Q Consensus 395 ~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~ 474 (794)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEE
Q 038881 475 NELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 475 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
+.+++||++|+. ..||||+|||++|+
T Consensus 184 -------------------------------------------------~~~~~~s~~g~~-----~~~~di~APG~~i~ 209 (306)
T 4h6w_A 184 -------------------------------------------------GKPVDFSNWGDA-----YQKQGILAPGKDIL 209 (306)
T ss_dssp -------------------------------------------------SCBCSSSCBCHH-----HHHHEEEEECSSEE
T ss_pred -------------------------------------------------CCccccccccCC-----cCcceeecCCcCcc
Confidence 366789999964 36889999999999
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCccccCCCcccccCCC
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL----HPEWSPAAIKSAIMTTASIQDNNKGQILNASS 630 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~ 630 (794)
++++. +.|..++|||||||||||++|||+++ +|.|+|+|||++|++||+++...+
T Consensus 210 s~~~~-------------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-------- 268 (306)
T 4h6w_A 210 GAKPN-------------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-------- 268 (306)
T ss_dssp EECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT--------
T ss_pred cccCC-------------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC--------
Confidence 99876 48999999999999999999999864 699999999999999999875433
Q ss_pred CCCCCCcccccccccccccC
Q 038881 631 YKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 631 ~~~~~~~~G~G~vn~~~Al~ 650 (794)
......||+|+||+.+|++
T Consensus 269 -~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 269 -TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp -CSCGGGGTTCBCCHHHHHH
T ss_pred -CCCCCCcceeecCHHHHHH
Confidence 2234579999999999997
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=439.53 Aligned_cols=279 Identities=17% Similarity=0.133 Sum_probs=221.6
Q ss_pred ccccccCCCccccccccccCCCC--ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecc
Q 038881 144 FLGLERNGRVESNSIWKKARYGE--DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFN 221 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~--GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~ 221 (794)
.|++..+. +..+|+. ++|+ ||+||||||||| +||+|.++ ++..++|.
T Consensus 24 ~W~l~~i~---~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~--------------------------~~~~~~~~ 72 (347)
T 2iy9_A 24 PWYFDAIG---LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS--------------------------EFAKFSFT 72 (347)
T ss_dssp CHHHHHHT---CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC--------------------------EEEEEECB
T ss_pred CcchhhCC---hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC--------------------------cccCCccc
Confidence 34555443 5689988 8999 999999999999 99999753 34445554
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH
Q 038881 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
++- .+. ......|..||||||||||+|. .| +.||||+|+|+.+|+++.. + .. ++++
T Consensus 73 ~~~----~~~--~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~--~--~~--~~~~ 128 (347)
T 2iy9_A 73 QDG----SPF--PVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDG--V--QD--SWIR 128 (347)
T ss_dssp TTC----CSS--CCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSB--C--TT--HHHH
T ss_pred CCC----CCC--CCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCC--C--HH--HHHH
Confidence 320 000 1124567889999999999986 22 3899999999999999765 2 22 9999
Q ss_pred HHHHhHhC------CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCC-------CCCcCCCCC-----
Q 038881 302 AFDMAIHD------GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPT-------DSTVSNIAP----- 363 (794)
Q Consensus 302 ai~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~-------~~~~~~~ap----- 363 (794)
||+||+++ +++|||||||..........+..++..+.++|++||+||||+|.. ...++...+
T Consensus 129 ai~~a~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~ 208 (347)
T 2iy9_A 129 AIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSV 208 (347)
T ss_dssp HHHHHHTCTTSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHH
T ss_pred HHHHHHhhhhcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCcccccc
Confidence 99999999 999999999987433455678888889999999999999999975 334555677
Q ss_pred -----ceEEeccccC--CCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCc
Q 038881 364 -----WQITVGASTM--DRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKV 436 (794)
Q Consensus 364 -----~vitVgAs~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 436 (794)
++|+|||++. +....
T Consensus 209 ~~~~~~vi~Vga~~~~~~g~~~---------------------------------------------------------- 230 (347)
T 2iy9_A 209 NKKQDPVIRVAALAQYRKGETP---------------------------------------------------------- 230 (347)
T ss_dssp HHHTCCEEEEEEECCCCTTSCC----------------------------------------------------------
T ss_pred ccccCCEEEEEEcccCCCCcee----------------------------------------------------------
Confidence 9999999754 21000
Q ss_pred cceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEecee
Q 038881 437 KGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATT 516 (794)
Q Consensus 437 ~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~ 516 (794)
T Consensus 231 -------------------------------------------------------------------------------- 230 (347)
T 2iy9_A 231 -------------------------------------------------------------------------------- 230 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHH
Q 038881 517 ELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLK 596 (794)
Q Consensus 517 ~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 596 (794)
.....++.||++||+ ||||+|||++|+++++. +.|..++|||||||||||++|||+
T Consensus 231 ----~~~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~ 286 (347)
T 2iy9_A 231 ----VLHGGGITGSRFGNN-------WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMT 286 (347)
T ss_dssp ----CBCCCSSSCBCBCTT-------TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHH
T ss_pred ----cccCCCCCCCCCCCC-------CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHH
Confidence 001356799999994 56999999999999875 489999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccCC
Q 038881 597 TLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 597 q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
|++|+|++.+||++|++||+++...+ +..+|+|+||+.+|++.
T Consensus 287 ~~~p~lt~~~v~~~L~~tA~~~~~~~------------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 287 SCNPRATATELKRTLLESADKYPSLV------------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHCTTSCHHHHHHHHHHHSEECGGGT------------TTSGGGEECCHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhCccCCCCC------------CccccCCEecHHHHHHH
Confidence 99999999999999999999874332 36899999999999974
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=469.28 Aligned_cols=355 Identities=23% Similarity=0.227 Sum_probs=249.9
Q ss_pred CCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-----CCceE
Q 038881 239 RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-----DGVDV 313 (794)
Q Consensus 239 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-----~g~dV 313 (794)
.|++||||||||||||.. ++..+.||||+|+|+.+|+++... +.......++.+|.+|++ .+++|
T Consensus 267 ~D~~GHGThVAGIIAa~~---------N~~g~~GVAP~AkI~~vKVld~~~-g~~~t~s~l~~AI~~Aid~a~~~~gadV 336 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIVSMTIGDGRL-GSMETGTALVRAMTKVMELCRDGRRIDV 336 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC---------SSSSSCCSCTTCEEEEEECBCTTT-SSCBCHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCcHHHHHHHHhcCC---------CCCCceeecCCCEEEEEEeccCCC-CcccChHHHHHHHHHHHHHHhhcCCceE
Confidence 478999999999999984 233458999999999999997653 212356778888888877 79999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHH-hCCcEEEEecCCCCCCCCCc--CC--CCCceEEeccccCCCCccceEEecCCeE
Q 038881 314 LSVSLGGGPSKFFNDSTAIGSFHAV-KHGMVVICSAGNSGPTDSTV--SN--IAPWQITVGASTMDRDFPSYVVVSNNKR 388 (794)
Q Consensus 314 IN~SlG~~~~~~~~~~~~~a~~~a~-~~Gv~vV~AAGN~G~~~~~~--~~--~ap~vitVgAs~~~~~~~~~~~~~~~~~ 388 (794)
||||||........+.+..++.++. ++|++||+||||+|+...++ ++ .++++|+|||++...........
T Consensus 337 INmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~----- 411 (1354)
T 3lxu_X 337 INMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM----- 411 (1354)
T ss_dssp EEECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------
T ss_pred EEcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-----
Confidence 9999999854334567777888875 89999999999999875554 33 37999999998654311000000
Q ss_pred EeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEe
Q 038881 389 YKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLA 468 (794)
Q Consensus 389 ~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 468 (794)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEe
Q 038881 469 NAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITA 548 (794)
Q Consensus 469 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 548 (794)
.....+.+++||||||+. ++++||||+|
T Consensus 412 --------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaA 439 (1354)
T 3lxu_X 412 --------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCA 439 (1354)
T ss_dssp --------------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEE
T ss_pred --------------------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEe
Confidence 000125789999999998 8999999999
Q ss_pred CCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccccCCCcc
Q 038881 549 PGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LHPEWSPAAIKSAIMTTASIQDNNKGQ 624 (794)
Q Consensus 549 PG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~~ 624 (794)
||++|+++..... ++|..++|||||||||||++|||++ .+|.|++.+||++|++||+++..
T Consensus 440 PG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~---- 504 (1354)
T 3lxu_X 440 PGGAIASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY---- 504 (1354)
T ss_dssp EC--------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT----
T ss_pred cCceEEEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC----
Confidence 9999998865321 4789999999999999999999986 79999999999999999998743
Q ss_pred cccCCCCCCCCCcccccccccccccCCCccccCCchhhhhhhhcCCCC-ccceEecccccccCCCCCCCCCCCCCeEEee
Q 038881 625 ILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYN-KTQIALFSDKTYRCPEYVSTANFNYPSITVP 703 (794)
Q Consensus 625 ~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~n~ps~~~~ 703 (794)
.+++.||+|+||+.+|++..+.++....+++.|.|..+.+ ...|.+... .+
T Consensus 505 --------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR~~---~~----------------- 556 (1354)
T 3lxu_X 505 --------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQG---VQ----------------- 556 (1354)
T ss_dssp --------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEECSS---CC-----------------
T ss_pred --------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEecc---cc-----------------
Confidence 2467899999999999999999999999999999998853 222221110 00
Q ss_pred cCCceEEEEE----EEEecC---C--Cce--EEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEE
Q 038881 704 KLSGSIIVSR----TVRNVG---S--PGT--YIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVF 772 (794)
Q Consensus 704 ~~~~~~~~~~----tv~n~~---~--~~t--y~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~ 772 (794)
....++++ ++.|.. . ... -++.+.... --| ..|..+.+ .++.++|.|.++++. ...+.++
T Consensus 557 --~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv-~~p~~l~l--~~~~r~~~v~vDp~~---L~~G~h~ 627 (1354)
T 3lxu_X 557 --RNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWV-QCGAFLDL--SYGTRSIAVRVDPTG---LQPGVHS 627 (1354)
T ss_dssp --CSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTE-EECSCEEC--TTSCEEEEEEECGGG---CCSEEEE
T ss_pred --CCceEEEEEEeeeecCcccCChhhccceEEEEEEecCC-Cce-ecccceee--cCCCceEEEEECCCC---CCCccee
Confidence 12233333 342211 1 212 222222211 123 34888877 578899999999987 4557789
Q ss_pred EEEEEEeC----CccEEEeEEEEE
Q 038881 773 GDLVWADD----KQHQVRSPIVVN 792 (794)
Q Consensus 773 G~~~~~~~----~~~~v~~P~~~~ 792 (794)
+.|..-+. .++..|||+.|-
T Consensus 628 ~~v~~~D~~~~~~gp~f~ipvTv~ 651 (1354)
T 3lxu_X 628 AVIRAYDTDCVQKGSLFEIPVTVV 651 (1354)
T ss_dssp EEEEEEESSCTTSCCSEEEEEEEE
T ss_pred EEEEEEEcCCcccCceEEeeEEEE
Confidence 99987653 369999999874
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=413.40 Aligned_cols=248 Identities=26% Similarity=0.378 Sum_probs=209.0
Q ss_pred ccccccCCCc--cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecc
Q 038881 144 FLGLERNGRV--ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFN 221 (794)
Q Consensus 144 ~~gl~~~~~~--~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~ 221 (794)
.|+|+++.+. +...+|..+++|+||+|||||||||++||+|.++ ++.+++|.
T Consensus 5 ~W~l~~i~~~~~~~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~ 58 (284)
T 1sh7_A 5 IWGLDRIDQRNLPLDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR--------------------------SVSGYDFV 58 (284)
T ss_dssp CHHHHHHTCSSSSCCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC--------------------------EEEEEETT
T ss_pred CcChhhcCCcccCchhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccccccc
Confidence 4566555432 3467899999999999999999999999999753 34455665
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH
Q 038881 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
++ ...+.|..||||||||||+|.. .||||+|+|+.+|+++.. | .+..+++++
T Consensus 59 ~~-----------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~--g-~~~~~~~~~ 110 (284)
T 1sh7_A 59 DN-----------DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCS--G-SGTTSGVIS 110 (284)
T ss_dssp TT-----------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTT--S-CBCHHHHHH
T ss_pred CC-----------CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCC--C-CcCHHHHHH
Confidence 43 2346688999999999999863 699999999999999876 4 478899999
Q ss_pred HHHHhHh--CCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEeccccCCCCcc
Q 038881 302 AFDMAIH--DGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS-TVSNIAPWQITVGASTMDRDFP 378 (794)
Q Consensus 302 ai~~a~~--~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~ 378 (794)
||+|+++ .+++|||||||.. ....+..++.++.++|++||+||||+|.... ..+...|++|+|||++.+
T Consensus 111 ai~~a~~~~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---- 182 (284)
T 1sh7_A 111 GVDWVAQNASGPSVANMSLGGG----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS---- 182 (284)
T ss_dssp HHHHHHHHCCSSEEEEECCCBS----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT----
T ss_pred HHHHHHhCCCCCcEEEeCCCCC----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC----
Confidence 9999997 4799999999987 3456788888999999999999999997653 345578999999986432
Q ss_pred ceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHH
Q 038881 379 SYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQAL 458 (794)
Q Consensus 379 ~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 458 (794)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCC
Q 038881 459 LAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVA 538 (794)
Q Consensus 459 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 538 (794)
+.++.||++||.+
T Consensus 183 -----------------------------------------------------------------~~~~~~S~~G~~~-- 195 (284)
T 1sh7_A 183 -----------------------------------------------------------------DSRSSFSNWGSCV-- 195 (284)
T ss_dssp -----------------------------------------------------------------SBBCTTCCBSTTC--
T ss_pred -----------------------------------------------------------------CCcCcccCCCCcc--
Confidence 4678999999976
Q ss_pred CCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccc
Q 038881 539 PEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 539 ~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 618 (794)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|+++|||++|++||++.
T Consensus 196 ------di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 256 (284)
T 1sh7_A 196 ------DLFAPGSQIKSAWYD-------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASEN 256 (284)
T ss_dssp ------CEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred ------EEEeccCCeEEecCC-------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence 999999999999876 4799999999999999999999999999999999999999999875
Q ss_pred c
Q 038881 619 D 619 (794)
Q Consensus 619 ~ 619 (794)
.
T Consensus 257 ~ 257 (284)
T 1sh7_A 257 K 257 (284)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=441.29 Aligned_cols=295 Identities=24% Similarity=0.309 Sum_probs=226.1
Q ss_pred cccccc-ccCCCCceEEEEecCCCCC------CCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccc
Q 038881 155 SNSIWK-KARYGEDTIIGNLDTGVWP------ESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAA 227 (794)
Q Consensus 155 ~~~~~~-~g~~G~GV~VaVIDTGId~------~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~ 227 (794)
++.+|+ .+++|+||+|||||||||+ .||+|.++ +...++|.+.
T Consensus 10 ~~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~--------------------------i~~~~~~~~~---- 59 (434)
T 1wmd_A 10 ADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK--------------------------ITALYALGRT---- 59 (434)
T ss_dssp HHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC--------------------------EEEEEETTTT----
T ss_pred chhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC--------------------------EeeeccccCC----
Confidence 458997 7999999999999999999 79999743 3344455432
Q ss_pred cCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH
Q 038881 228 VGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI 307 (794)
Q Consensus 228 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~ 307 (794)
..+.|..||||||||||+|+. ..+.||||+|+|+.+|+++..+.. .+...++.++|++++
T Consensus 60 --------~~~~d~~gHGT~VAgiiag~g-----------~~~~GvAp~a~l~~~~v~~~~g~~-~~~~~~~~~ai~~a~ 119 (434)
T 1wmd_A 60 --------NNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTLFSQAY 119 (434)
T ss_dssp --------TCCCCSSSHHHHHHHHHHCCS-----------SSSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHHHHHHH
T ss_pred --------CCCCCCCCcHHHHHHHHHcCC-----------CCceeeCCCCEEEEEEeecCCCcc-ccccHHHHHHHHHHH
Confidence 256688999999999999863 125799999999999999876211 114568999999999
Q ss_pred hCCceEEEEccCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCCCCCC--cCCCCCceEEeccccCCCCccceEEec
Q 038881 308 HDGVDVLSVSLGGGPSKFFNDSTAIGSFHA-VKHGMVVICSAGNSGPTDST--VSNIAPWQITVGASTMDRDFPSYVVVS 384 (794)
Q Consensus 308 ~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~~--~~~~ap~vitVgAs~~~~~~~~~~~~~ 384 (794)
+++++|||||||...... .+....++.++ .++|++||+||||+|..... .+..++++|+|||++..+...
T Consensus 120 ~~g~~Vin~S~G~~~~~~-~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~------ 192 (434)
T 1wmd_A 120 SAGARIHTNSWGAAVNGA-YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF------ 192 (434)
T ss_dssp HTTCSEEEECCCBCCTTC-CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG------
T ss_pred hcCCeEEEecCCCCcCCc-CCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc------
Confidence 999999999999874222 24455566555 58999999999999976543 445789999999976432000
Q ss_pred CCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceE
Q 038881 385 NNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVG 464 (794)
Q Consensus 385 ~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 464 (794)
. .
T Consensus 193 -----------------------------------------~-----------------------------------~-- 194 (434)
T 1wmd_A 193 -----------------------------------------G-----------------------------------S-- 194 (434)
T ss_dssp -----------------------------------------C-----------------------------------G--
T ss_pred -----------------------------------------C-----------------------------------c--
Confidence 0 0
Q ss_pred EEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccC
Q 038881 465 MVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKP 544 (794)
Q Consensus 465 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 544 (794)
.....+.++.||+|||+. ++++||
T Consensus 195 ------------------------------------------------------~~~~~~~~a~fS~~G~~~--~g~~kp 218 (434)
T 1wmd_A 195 ------------------------------------------------------YADNINHVAQFSSRGPTK--DGRIKP 218 (434)
T ss_dssp ------------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCC
T ss_pred ------------------------------------------------------ccCCCCccccccCCCCCC--CCCCCc
Confidence 000135889999999998 899999
Q ss_pred ceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCC-----CHHHHHHHHHhcCcccc
Q 038881 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW-----SPAAIKSAIMTTASIQD 619 (794)
Q Consensus 545 DI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l-----sp~~ik~~L~~TA~~~~ 619 (794)
||+|||++|+++++........ .....+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++.
T Consensus 219 di~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~ 297 (434)
T 1wmd_A 219 DVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG 297 (434)
T ss_dssp CEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS
T ss_pred eEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC
Confidence 9999999999998642210000 00013589999999999999999999999998865 89999999999998752
Q ss_pred CCCcccccCCCCCCCCCcccccccccccccCCC
Q 038881 620 NNKGQILNASSYKATPFSYGAGHIQPNLAMDPG 652 (794)
Q Consensus 620 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 652 (794)
. ..+++.||||+||+.+|++..
T Consensus 298 ~-----------~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 298 L-----------GYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp S-----------CSSCTTTTTCBCCHHHHHTCE
T ss_pred C-----------CCCCccCCcCeEeHHHhcccc
Confidence 1 346789999999999999753
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-49 Score=428.99 Aligned_cols=299 Identities=22% Similarity=0.323 Sum_probs=220.5
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCC-ccccccccc---cceeecccccccccC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKD-AKFLCNRKL---IGARYFNKGYAAAVG 229 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~-~~~~~n~ki---~g~~~~~~~~~~~~~ 229 (794)
++..+|+.+++|+||+||||||||+ +||+|.++-.. .|+ ..... .....+.+. .....+.+.+. .+
T Consensus 20 ~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~ 89 (340)
T 3lpc_A 20 KADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYD---FISNSQISLDGDGRDADPFDEGDWFDNWA--CG 89 (340)
T ss_dssp CHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEE---CCCCHHHHCSSSSSBSCCBCCCCCBCTTT--TS
T ss_pred CHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----Ccc---ccCCccccccCCCccCCcccccccccccc--cc
Confidence 3779999999999999999999998 99999754110 110 00000 000000000 00000000000 00
Q ss_pred CCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-
Q 038881 230 PLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH- 308 (794)
Q Consensus 230 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~- 308 (794)
..+.......|..||||||||||+|...+ ...+.||||+|+|+.+|+++.. + +...+++++|+|+++
T Consensus 90 ~~~~~~~~~~d~~gHGT~vAgiia~~~~~--------~~g~~GvAp~a~l~~~~v~~~~--~--~~~~~~~~ai~~a~~~ 157 (340)
T 3lpc_A 90 GRPDPRKERSDSSWHGSHVAGTIAAVTNN--------RIGVAGVAYGAKVVPVRALGRC--G--GYDSDISDGLYWAAGG 157 (340)
T ss_dssp CTTCGGGSCBCCCCHHHHHHHHHHCCCSS--------SSSCCCTTTTSEEEEEECCBTT--B--CCHHHHHHHHHHHHTC
T ss_pred CCCCcccCCCCCCCCHHHHHHHHHccCCC--------CCcceeecCCCEEEEEEEecCC--C--CcHHHHHHHHHHHhcc
Confidence 00011223568899999999999997522 2235899999999999999876 3 688999999999998
Q ss_pred ---------CCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEeccccCCCCcc
Q 038881 309 ---------DGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS-TVSNIAPWQITVGASTMDRDFP 378 (794)
Q Consensus 309 ---------~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~ 378 (794)
.+++|||||||... .....+..++.++.++|++||+||||+|.... .++...+++|+|||++.+
T Consensus 158 ~~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---- 231 (340)
T 3lpc_A 158 RIAGIPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR---- 231 (340)
T ss_dssp CCTTSCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT----
T ss_pred cccccccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC----
Confidence 89999999999862 23455777888899999999999999997654 345678999999986432
Q ss_pred ceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHH
Q 038881 379 SYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQAL 458 (794)
Q Consensus 379 ~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 458 (794)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCC
Q 038881 459 LAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVA 538 (794)
Q Consensus 459 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 538 (794)
+.++.||++||.+
T Consensus 232 -----------------------------------------------------------------~~~~~~S~~g~~~-- 244 (340)
T 3lpc_A 232 -----------------------------------------------------------------GIRASFSNYGVDV-- 244 (340)
T ss_dssp -----------------------------------------------------------------SSBCTTCCBSTTC--
T ss_pred -----------------------------------------------------------------CCcCCCCCCCCCc--
Confidence 4678999999854
Q ss_pred CCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhh-C---CCCCHHHHHHHHHhc
Q 038881 539 PEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL-H---PEWSPAAIKSAIMTT 614 (794)
Q Consensus 539 ~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~lsp~~ik~~L~~T 614 (794)
||+|||++|+++++..... .....|..++|||||||||||++|||+|+ + |.|++++||++|++|
T Consensus 245 ------di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~t 312 (340)
T 3lpc_A 245 ------DLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312 (340)
T ss_dssp ------CEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred ------eEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhc
Confidence 9999999999998764321 11246999999999999999999999998 5 999999999999999
Q ss_pred CccccCCCcccccCCCCCCCCCcccccccccccccCC
Q 038881 615 ASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 615 A~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
|+++.. .++..+|+|+||+.+|++.
T Consensus 313 A~~~~~------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 313 TSPFNG------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp CBCCSS------------CCSSCCCSSBCCHHHHHHH
T ss_pred CCcCCC------------CCCCCcccceecHHHHHHH
Confidence 998632 2456899999999999974
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=409.01 Aligned_cols=249 Identities=28% Similarity=0.398 Sum_probs=208.1
Q ss_pred ccccccCCCc--cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecc
Q 038881 144 FLGLERNGRV--ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFN 221 (794)
Q Consensus 144 ~~gl~~~~~~--~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~ 221 (794)
.|+|+++.+. +...+|..+++|+||+|+|||||||++||+|.++ +..+++|.
T Consensus 7 ~W~l~~i~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~--------------------------~~~~~d~~ 60 (278)
T 2b6n_A 7 TWGIDRIDQRNLPLDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR--------------------------ASSGYDFI 60 (278)
T ss_dssp CHHHHHHTCSSSSCCSEEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETT
T ss_pred CCCccccCCccCCcchhcccCCCCCCCEEEEEeCCCCCCChhHhcc--------------------------cccCeecC
Confidence 4555554432 3467899999999999999999999999999753 33445555
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH
Q 038881 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
++ ..++.|..||||||||||+|.. .||||+|+|+.+|++++. | .+..+++++
T Consensus 61 ~~-----------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~--g-~~~~~~~~~ 112 (278)
T 2b6n_A 61 DN-----------DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCS--G-SGSNSGVIA 112 (278)
T ss_dssp TT-----------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT--S-CCCHHHHHH
T ss_pred CC-----------CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCC--C-CccHHHHHH
Confidence 43 2345788999999999999863 699999999999999876 3 468899999
Q ss_pred HHHHhHh--CCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cCCCCCceEEeccccCCCCcc
Q 038881 302 AFDMAIH--DGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST-VSNIAPWQITVGASTMDRDFP 378 (794)
Q Consensus 302 ai~~a~~--~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~~~~~~ 378 (794)
||+|+++ .+++|||||||... ...+..++.++.++|++||+||||+|...+. .+...+++|+|||++.+
T Consensus 113 ai~~a~~~~~g~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---- 184 (278)
T 2b6n_A 113 GINWVKNNASGPAVANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN---- 184 (278)
T ss_dssp HHHHHHHHCCSSEEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----
T ss_pred HHHHHHhCCCCCeEEEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC----
Confidence 9999997 59999999999863 4567788888999999999999999976543 35578999999986432
Q ss_pred ceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHH
Q 038881 379 SYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQAL 458 (794)
Q Consensus 379 ~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 458 (794)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCC
Q 038881 459 LAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVA 538 (794)
Q Consensus 459 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 538 (794)
+.++.||++||.+
T Consensus 185 -----------------------------------------------------------------~~~~~~S~~G~~~-- 197 (278)
T 2b6n_A 185 -----------------------------------------------------------------DSRSSFSNYGTCL-- 197 (278)
T ss_dssp -----------------------------------------------------------------SBBCTTCCBSTTC--
T ss_pred -----------------------------------------------------------------CCcCCcCCCCCCC--
Confidence 4678999999966
Q ss_pred CCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccc
Q 038881 539 PEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 539 ~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 618 (794)
||+|||++|+++++... +.|..++|||||||||||++|||+|++|+|+++|||++|++||++.
T Consensus 198 ------di~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 198 ------DIYAPGSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp ------CEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred ------eEEeCCCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 99999999999986521 3789999999999999999999999999999999999999999874
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=408.48 Aligned_cols=249 Identities=27% Similarity=0.379 Sum_probs=209.6
Q ss_pred cccccccCCC--ccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeec
Q 038881 143 EFLGLERNGR--VESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYF 220 (794)
Q Consensus 143 ~~~gl~~~~~--~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~ 220 (794)
..|++.++.. .+...+|..+++|+||+|||||||||++||+|.++ +...++|
T Consensus 6 ~~W~l~~i~~~~~~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~ 59 (276)
T 4dzt_A 6 APWGLDRIDQRDLPLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR--------------------------ARVGYDA 59 (276)
T ss_dssp CCHHHHHHTSSSSSCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEET
T ss_pred CCCChhhcCCccCCcccceecCCCCCCcEEEEEccCCCCCChhHccC--------------------------eeccccC
Confidence 3455554433 23568899999999999999999999999999753 3334444
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHH
Q 038881 221 NKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADIL 300 (794)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~ 300 (794)
..+ ...|..||||||||||+|.. .||||+|+|+.+|++++. + .+....++
T Consensus 60 ~~~-------------~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~--~-~~~~~~~~ 109 (276)
T 4dzt_A 60 LGG-------------NGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCN--G-SGSTSGVI 109 (276)
T ss_dssp TSS-------------CSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT--S-CCCHHHHH
T ss_pred CCC-------------CCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCC--C-CcCHHHHH
Confidence 432 45678999999999999873 799999999999999877 3 47889999
Q ss_pred HHHHHhHhC--CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-CCCCCceEEeccccCCCCc
Q 038881 301 AAFDMAIHD--GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV-SNIAPWQITVGASTMDRDF 377 (794)
Q Consensus 301 ~ai~~a~~~--g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-~~~ap~vitVgAs~~~~~~ 377 (794)
++|+|+++. +++|||||||.. ....+..++.++.++|++||+||||+|...... +...+++|+|||++.+
T Consensus 110 ~ai~~~~~~~~~~~vin~S~g~~----~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--- 182 (276)
T 4dzt_A 110 AGVDWVTRNHRRPAVANMSLGGG----VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS--- 182 (276)
T ss_dssp HHHHHHHHHCCSSEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---
T ss_pred HHHHHHHhcCCCCeEEEECCCCC----CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC---
Confidence 999999986 999999999986 356688888899999999999999999765544 5578899999986432
Q ss_pred cceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHH
Q 038881 378 PSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQA 457 (794)
Q Consensus 378 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 457 (794)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCC
Q 038881 458 LLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV 537 (794)
Q Consensus 458 ~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~ 537 (794)
+.++.||++||+.
T Consensus 183 ------------------------------------------------------------------~~~~~~S~~g~~~- 195 (276)
T 4dzt_A 183 ------------------------------------------------------------------DARASFSNYGSCV- 195 (276)
T ss_dssp ------------------------------------------------------------------SBBCTTCCBSTTC-
T ss_pred ------------------------------------------------------------------CCcCCcCCCCCCc-
Confidence 4778999999987
Q ss_pred CCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcc
Q 038881 538 APEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASI 617 (794)
Q Consensus 538 ~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~ 617 (794)
||+|||++|+++++... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 196 -------dv~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~ 257 (276)
T 4dzt_A 196 -------DLFAPGASIPSAWYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATT 257 (276)
T ss_dssp -------CEEEECSSEEEECTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEE
T ss_pred -------eEEeCCCCeEccccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcC
Confidence 99999999999987632 378999999999999999999999999999999999999999998
Q ss_pred cc
Q 038881 618 QD 619 (794)
Q Consensus 618 ~~ 619 (794)
..
T Consensus 258 ~~ 259 (276)
T 4dzt_A 258 GR 259 (276)
T ss_dssp SC
T ss_pred Cc
Confidence 64
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-48 Score=408.57 Aligned_cols=255 Identities=28% Similarity=0.364 Sum_probs=209.0
Q ss_pred cccccccCCCcc---ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceee
Q 038881 143 EFLGLERNGRVE---SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARY 219 (794)
Q Consensus 143 ~~~gl~~~~~~~---~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~ 219 (794)
..|+|+++.... ....|. ..+|+||+|+|||||||++||+|.++ +...++
T Consensus 6 ~~W~l~~i~~~~~~~~~~~~~-~~~G~gv~VaViDsGvd~~H~~l~~~--------------------------~~~~~~ 58 (279)
T 2pwa_A 6 APWGLARISSTSPGTSTYYYD-ESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKT 58 (279)
T ss_dssp CCHHHHHHTCSSTTCCCEECC-TTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEE
T ss_pred CCcChhhcCCCCccccccccc-CCCCCCCEEEEEeCCCCCCChhHhCc--------------------------cccccC
Confidence 345666554321 122454 37999999999999999999999753 333444
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHH
Q 038881 220 FNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADI 299 (794)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i 299 (794)
|.+ .+.|..||||||||||+|.. .||||+|+|+.+|+++.. | .+..+++
T Consensus 59 ~~~--------------~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~--g-~~~~~~~ 107 (279)
T 2pwa_A 59 YYY--------------SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDN--G-SGQYSTI 107 (279)
T ss_dssp SSS--------------CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT--S-CCCHHHH
T ss_pred CCC--------------CCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCC--C-CcCHHHH
Confidence 431 35678999999999999863 799999999999999876 3 4788999
Q ss_pred HHHHHHhHhCCc-------eEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cCCCCCceEEeccc
Q 038881 300 LAAFDMAIHDGV-------DVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST-VSNIAPWQITVGAS 371 (794)
Q Consensus 300 ~~ai~~a~~~g~-------dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~ap~vitVgAs 371 (794)
++||+|++++++ +|||||||.. ....+..++.++.++|++||+||||+|..... ++...|++|+|||+
T Consensus 108 ~~ai~~a~~~~~~~~~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~ 183 (279)
T 2pwa_A 108 IAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGAS 183 (279)
T ss_dssp HHHHHHHHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEE
T ss_pred HHHHHHHHhcCccccCCCccEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEe
Confidence 999999999887 9999999976 34678888889999999999999999976543 45578999999986
Q ss_pred cCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhh
Q 038881 372 TMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARI 451 (794)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~ 451 (794)
+.+
T Consensus 184 ~~~----------------------------------------------------------------------------- 186 (279)
T 2pwa_A 184 DRY----------------------------------------------------------------------------- 186 (279)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 432
Q ss_pred hHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccC
Q 038881 452 DKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSS 531 (794)
Q Consensus 452 ~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 531 (794)
+.++.||+
T Consensus 187 ------------------------------------------------------------------------~~~~~~S~ 194 (279)
T 2pwa_A 187 ------------------------------------------------------------------------DRRSSFSN 194 (279)
T ss_dssp ------------------------------------------------------------------------SBBCTTCC
T ss_pred ------------------------------------------------------------------------CCcCCcCC
Confidence 46789999
Q ss_pred CCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 038881 532 KGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAI 611 (794)
Q Consensus 532 ~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L 611 (794)
|||.+ ||+|||++|+++++. +.|..++|||||||||||++|||+|+ |++++.|||++|
T Consensus 195 ~G~~~--------di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L 252 (279)
T 2pwa_A 195 YGSVL--------DIFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYI 252 (279)
T ss_dssp BSTTC--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHH
T ss_pred CCCcc--------eEEEecCCeEEeecC-------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 99976 999999999999876 37899999999999999999999999 999999999999
Q ss_pred HhcCccccCCCcccccCCCCCCCCCccccccccc
Q 038881 612 MTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645 (794)
Q Consensus 612 ~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 645 (794)
++||++... ..+|+|..|+
T Consensus 253 ~~tA~~~~~---------------~~~~~g~~n~ 271 (279)
T 2pwa_A 253 ADTANKGDL---------------SNIPFGTVNL 271 (279)
T ss_dssp HHHSEESCC---------------BSCCTTSCCE
T ss_pred HHhCccccc---------------CCCCCCCccE
Confidence 999987521 2367777776
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=428.64 Aligned_cols=293 Identities=15% Similarity=0.151 Sum_probs=218.9
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
++..+|..+++|+||+|||||||||++||+|.++- .....++|.++. ..+.
T Consensus 26 ~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~~---~~p~-- 76 (471)
T 1p8j_A 26 NVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------------------DPGASFDVNDQD---PDPQ-- 76 (471)
T ss_dssp CCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------------------CGGGCEETTTTB---SCCC--
T ss_pred ChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc------------------------CccCcccccCCC---CCCC--
Confidence 47899999999999999999999999999997530 011234444321 0010
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-CCce
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVD 312 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-~g~d 312 (794)
+.....|.+||||||||||+|...+ +..+.||||+|+|+.+|+++ +..+++++|++++++ ++++
T Consensus 77 ~~~~~~d~~gHGT~vAGiiaa~~~n--------~~g~~GvAp~a~i~~~rv~~-------g~~~~~~~ai~~a~~~~~~~ 141 (471)
T 1p8j_A 77 PRYTQMNDNRHGTRCAGEVAAVANN--------GVCGVGVAYNARIGGVRMLD-------GEVTDAVEARSLGLNPNHIH 141 (471)
T ss_dssp CCCCTTCTTCHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECSS-------SCCCHHHHHHHHTSCTTTCC
T ss_pred CccCCCCCCCcHHHHHHHHHeeccC--------CCCCEEECCCCeEEEEEccC-------CchhHHHHHHHhhhccCCCe
Confidence 1124568899999999999996421 22358999999999999985 246689999999999 9999
Q ss_pred EEEEccCCCCCC----CCCCHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----cCCCCCceEEeccccCCCCccc
Q 038881 313 VLSVSLGGGPSK----FFNDSTAIGSFHAVK-----HGMVVICSAGNSGPTDST----VSNIAPWQITVGASTMDRDFPS 379 (794)
Q Consensus 313 VIN~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~----~~~~ap~vitVgAs~~~~~~~~ 379 (794)
|||||||..... .....+..++.++.+ +|++||+||||+|..... ....++++|+|||++.+
T Consensus 142 Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~----- 216 (471)
T 1p8j_A 142 IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF----- 216 (471)
T ss_dssp EEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-----
T ss_pred EEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC-----
Confidence 999999986321 112234445555543 699999999999975322 12356899999986432
Q ss_pred eEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHH
Q 038881 380 YVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALL 459 (794)
Q Consensus 380 ~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 459 (794)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCC
Q 038881 460 AGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAP 539 (794)
Q Consensus 460 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 539 (794)
+.++.||++||.. .
T Consensus 217 ----------------------------------------------------------------g~~a~~S~~g~~~--~ 230 (471)
T 1p8j_A 217 ----------------------------------------------------------------GNVPWYSEACSST--L 230 (471)
T ss_dssp ----------------------------------------------------------------SCCCTTCCBCTTC--C
T ss_pred ----------------------------------------------------------------CCcccccCCCCcc--e
Confidence 4678999999987 5
Q ss_pred CcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcccc
Q 038881 540 EILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQD 619 (794)
Q Consensus 540 ~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~ 619 (794)
...+|...+||.+|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||++++
T Consensus 231 ~~~~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~ 298 (471)
T 1p8j_A 231 ATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAH 298 (471)
T ss_dssp EEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTT
T ss_pred EEeCCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCC
Confidence 555666667778999997641 36899999999999999999999999999999999999999999876
Q ss_pred CCCcccccCCCCCCCCCcccccccccccccCCCc
Q 038881 620 NNKGQILNASSYKATPFSYGAGHIQPNLAMDPGL 653 (794)
Q Consensus 620 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 653 (794)
.....+.........+..||+|+||+.+|++...
T Consensus 299 ~~~~~~~~n~~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 299 LNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp CCCSCCEECTTSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCCCEEEcHhHHHHHhh
Confidence 4332222111122345789999999999998543
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=420.57 Aligned_cols=291 Identities=20% Similarity=0.228 Sum_probs=208.5
Q ss_pred cccccCCCcc-ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 145 LGLERNGRVE-SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 145 ~gl~~~~~~~-~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
|+|+++.+.. ....|..+++|+||+|+|||||||++||+|.++- ....+.+..+
T Consensus 4 WgL~rI~~~~~~~~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------------------------~~~~~~~v~~ 58 (546)
T 2qtw_B 4 WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------------------------MVTDFENVPE 58 (546)
T ss_dssp HHHHHTSCSSCC--------CCTTSEEEEEESCCCTTSTTTTTTE-------------------------EEEEEECCCC
T ss_pred CChhhcCCCcccchhcccCCCCCCcEEEEECCCCCCCChHHcccc-------------------------cccCcccccC
Confidence 5676665432 2347888999999999999999999999997540 0011111110
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
. .+. .......|..||||||||||+|+. .||||+|+|+.+|+++.+ | .++.+++++||
T Consensus 59 ~---dg~--~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~--G-~g~~s~ii~ai 116 (546)
T 2qtw_B 59 E---DGT--RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQ--G-KGTVSGTLIGL 116 (546)
T ss_dssp C---C---------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT--S-EEEHHHHHHHH
T ss_pred C---CCc--cccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCC--C-CcCHHHHHHHH
Confidence 0 000 001245688999999999999874 699999999999999876 4 46789999999
Q ss_pred HHhHhC------CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-CCCCCceEEeccccCCCC
Q 038881 304 DMAIHD------GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV-SNIAPWQITVGASTMDRD 376 (794)
Q Consensus 304 ~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-~~~ap~vitVgAs~~~~~ 376 (794)
+|+++. +++|||||||+. +...+..++.++.++|++||+||||+|.+.... +...|++|+|||++.+..
T Consensus 117 ~~a~~~~~~~~~g~~VINmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~ 192 (546)
T 2qtw_B 117 EFIRKSQLVQPVGPLVVLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQ 192 (546)
T ss_dssp HHHHHHHHHSCCSCEEEEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSC
T ss_pred HHHHHhhhhccCCCeEEEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCC
Confidence 999974 899999999975 345678888899999999999999999765433 557899999999764320
Q ss_pred ccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHH
Q 038881 377 FPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQ 456 (794)
Q Consensus 377 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 456 (794)
.
T Consensus 193 ~------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 193 P------------------------------------------------------------------------------- 193 (546)
T ss_dssp B-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCC
Q 038881 457 ALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSS 536 (794)
Q Consensus 457 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 536 (794)
...-..||++|+.+
T Consensus 194 ------------------------------------------------------------------a~~s~~fSn~G~~v 207 (546)
T 2qtw_B 194 ------------------------------------------------------------------VTLGTLGTNFGRCV 207 (546)
T ss_dssp ------------------------------------------------------------------CEETTEECCBSTTC
T ss_pred ------------------------------------------------------------------ccccCCcCCCCCcc
Confidence 00011389999855
Q ss_pred CCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 537 VAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 537 ~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|+|||++|++||.
T Consensus 208 --------DI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt 268 (546)
T 2qtw_B 208 --------DLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSA 268 (546)
T ss_dssp --------CEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSE
T ss_pred --------eEEecCccEEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcc
Confidence 99999999999987632 37899999999999999999999999999999999999999997
Q ss_pred cccCCCcccc------cCC---CCCCCCCcccccc--cccccccC
Q 038881 617 IQDNNKGQIL------NAS---SYKATPFSYGAGH--IQPNLAMD 650 (794)
Q Consensus 617 ~~~~~g~~~~------~~~---~~~~~~~~~G~G~--vn~~~Al~ 650 (794)
+.......+. ... ..+.....+|+|+ .++..+..
T Consensus 269 ~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 269 KDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp ESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred ccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 6432211110 000 1111456688998 88887775
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=425.23 Aligned_cols=285 Identities=18% Similarity=0.210 Sum_probs=217.6
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
++..+|..+++|+||+|||||||||++||+|.++- ...++++|.++. .
T Consensus 42 ~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~~--------~ 89 (503)
T 2id4_A 42 NVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF------------------------CAEGSWDFNDNT--------N 89 (503)
T ss_dssp CCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB------------------------CGGGCEETTTTB--------S
T ss_pred ChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc------------------------cccCcccCCCCC--------C
Confidence 46789999999999999999999999999997541 011234554331 0
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceE
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dV 313 (794)
......|.+||||||||||+|...+ +..+.||||+|+|+.+|+++.. +...++++||+|+++++ +|
T Consensus 90 ~~~p~~d~~gHGT~vAGiiaa~~~n--------~~~~~GvAp~a~i~~~rv~~~~-----~~~~~~~~ai~~a~~~~-~I 155 (503)
T 2id4_A 90 LPKPRLSDDYHGTRCAGEIAAKKGN--------NFCGVGVGYNAKISGIRILSGD-----ITTEDEAASLIYGLDVN-DI 155 (503)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECTTSC-----CCHHHHHHHTTTTTTTC-SE
T ss_pred CCCCCCCCCChHHHHHHHHHhccCC--------CCCcEEECCCCEEEEEEeeCCC-----CChHHHHHHHHhHhhcC-CE
Confidence 0122357889999999999997422 2234899999999999999743 67889999999999988 99
Q ss_pred EEEccCCCCCC-C---CCCHHHHHHHHHH-----hCCcEEEEecCCCCCCCC--CcC--CCCCceEEeccccCCCCccce
Q 038881 314 LSVSLGGGPSK-F---FNDSTAIGSFHAV-----KHGMVVICSAGNSGPTDS--TVS--NIAPWQITVGASTMDRDFPSY 380 (794)
Q Consensus 314 IN~SlG~~~~~-~---~~~~~~~a~~~a~-----~~Gv~vV~AAGN~G~~~~--~~~--~~ap~vitVgAs~~~~~~~~~ 380 (794)
||||||..... . ....+..++.++. .+|++||+||||+|.... .++ ..++++|+|||++.+
T Consensus 156 in~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~------ 229 (503)
T 2id4_A 156 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK------ 229 (503)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT------
T ss_pred EEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC------
Confidence 99999986321 1 2234566666665 479999999999996532 222 256789999986432
Q ss_pred EEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHc
Q 038881 381 VVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLA 460 (794)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 460 (794)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCC
Q 038881 461 GAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPE 540 (794)
Q Consensus 461 Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 540 (794)
+.++.||++||..
T Consensus 230 ---------------------------------------------------------------~~~a~~S~~g~~~---- 242 (503)
T 2id4_A 230 ---------------------------------------------------------------DLHPPYSEGCSAV---- 242 (503)
T ss_dssp ---------------------------------------------------------------SCCCTTCCCCTTE----
T ss_pred ---------------------------------------------------------------CCcCCcCCCCCcc----
Confidence 4678999999988
Q ss_pred cccCceEe----CCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 541 ILKPDITA----PGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 541 ~~KPDI~A----PG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
|++| ||..|+++.... +.|..++|||||||||||++|||+|++|+|++++||++|++||+
T Consensus 243 ----~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 306 (503)
T 2id4_A 243 ----MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 306 (503)
T ss_dssp ----EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred ----eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccc
Confidence 8887 899999995431 47999999999999999999999999999999999999999999
Q ss_pred cccCC-CcccccCCCCCCCCCcccccccccccccCCCc
Q 038881 617 IQDNN-KGQILNASSYKATPFSYGAGHIQPNLAMDPGL 653 (794)
Q Consensus 617 ~~~~~-g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 653 (794)
++... ...+.........+..||+|+||+.+|++...
T Consensus 307 ~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 307 GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp CCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred cCCCCcCCCceecCCCCccCcccCCcEecHHHHHHHHh
Confidence 87643 11111111122345689999999999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-46 Score=394.07 Aligned_cols=230 Identities=28% Similarity=0.391 Sum_probs=197.2
Q ss_pred ccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCC
Q 038881 157 SIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFD 236 (794)
Q Consensus 157 ~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 236 (794)
.+|... +|+||+|||||||||++||+|.++ +...+.|..+
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~------------- 63 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR--------------------------AKQIKSYAST------------- 63 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEECSSS-------------
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc--------------------------cccccCCCCC-------------
Confidence 566665 999999999999999999999753 3334444432
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCC------
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDG------ 310 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g------ 310 (794)
..|..||||||||||+|+. .||||+|+|+.+|+++.. | .+..++++++|+|+++++
T Consensus 64 -~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~--~-~~~~~~~~~ai~~~~~~~~~~~~~ 125 (279)
T 3f7m_A 64 -ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDS--G-SGSLSNIIAGMDFVASDRQSRNCP 125 (279)
T ss_dssp -SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT--S-CCCHHHHHHHHHHHHHHGGGSCCT
T ss_pred -CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCC--C-CcCHHHHHHHHHHHHhccccccCC
Confidence 2378999999999999863 799999999999999876 3 478899999999999876
Q ss_pred -ceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-CCCCCceEEeccccCCCCccceEEecCCeE
Q 038881 311 -VDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV-SNIAPWQITVGASTMDRDFPSYVVVSNNKR 388 (794)
Q Consensus 311 -~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-~~~ap~vitVgAs~~~~~~~~~~~~~~~~~ 388 (794)
++|||||||.. ....+..++.++.++|++||+||||+|...... +...+++|+|||++.+
T Consensus 126 ~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 187 (279)
T 3f7m_A 126 RRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN-------------- 187 (279)
T ss_dssp TEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------
T ss_pred CCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC--------------
Confidence 99999999976 456788888899999999999999999765444 4577999999986432
Q ss_pred EeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEe
Q 038881 389 YKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLA 468 (794)
Q Consensus 389 ~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 468 (794)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEe
Q 038881 469 NAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITA 548 (794)
Q Consensus 469 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 548 (794)
+.++.||++||.+ ||+|
T Consensus 188 -------------------------------------------------------~~~~~~S~~g~~~--------di~A 204 (279)
T 3f7m_A 188 -------------------------------------------------------DVRSTFSNYGRVV--------DIFA 204 (279)
T ss_dssp -------------------------------------------------------SBBCTTCCBSTTC--------CEEE
T ss_pred -------------------------------------------------------CCCCCCCCCCCCC--------eEEE
Confidence 4778999999976 9999
Q ss_pred CCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcccc
Q 038881 549 PGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQD 619 (794)
Q Consensus 549 PG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~ 619 (794)
||++|+++++. +.|..++|||||||+|||++|||+|++|. ++++||++|++||++..
T Consensus 205 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 205 PGTSITSTWIG-------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp ECSSEEEECGG-------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred CCCCeEeecCC-------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 99999999876 47899999999999999999999999999 99999999999998753
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=418.58 Aligned_cols=298 Identities=19% Similarity=0.176 Sum_probs=202.9
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
++..+|..+++|+||+|||||||||++||||.++ ...+.++|.++. .
T Consensus 58 nv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-------------------------~~~~~~~~~~~~------~-- 104 (600)
T 3hjr_A 58 NLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-------------------------VRPGSKNVVTGS------D-- 104 (600)
T ss_dssp CCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-------------------------BCSCCBCTTTSS------S--
T ss_pred CHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-------------------------cccCcceeecCC------C--
Confidence 4678999999999999999999999999999753 011223343321 0
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH-HHhHhCCce
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF-DMAIHDGVD 312 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai-~~a~~~g~d 312 (794)
+.....|.+||||||||||||.. + +..+.||||+|+|+.+|++++. + .+..++++.|+ +++..++++
T Consensus 105 dp~p~~~~~gHGThVAGiIAa~~----n-----~~g~~GVAp~A~l~~~rvl~~~--~-~~~~~~~~~a~~~~~~~~~~~ 172 (600)
T 3hjr_A 105 DPTPTDPDTAHGTSVSGIIAAVD----N-----AIGTKGIAPRAQLQGFNLLDDN--S-QQLQKDWLYALGDSNASRDNR 172 (600)
T ss_dssp CCCCCSTTCCHHHHHHHHHHCCS----S-----SSSCCCSSTTCEEEEECTTSTT--C-CCCHHHHHHHTTSSHHHHTCS
T ss_pred CCCCCCCCCChHHHHHHHHhEeC----C-----CCCcEEeCCCCEEEEEEeecCC--C-CccHHHHHHHhhhhhhhcCCC
Confidence 11233467899999999999863 1 2224899999999999999876 3 45677777776 567778999
Q ss_pred EEEEccCCCC-CCCCCCHH-----HHHHHH--HHhCCcEEEEecCCCCCCCCCc----------------------CCCC
Q 038881 313 VLSVSLGGGP-SKFFNDST-----AIGSFH--AVKHGMVVICSAGNSGPTDSTV----------------------SNIA 362 (794)
Q Consensus 313 VIN~SlG~~~-~~~~~~~~-----~~a~~~--a~~~Gv~vV~AAGN~G~~~~~~----------------------~~~a 362 (794)
|||+|||... .....+.. ..++.. ...+|+++|+||||.+...... ...+
T Consensus 173 I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~ 252 (600)
T 3hjr_A 173 VFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSN 252 (600)
T ss_dssp EEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGS
T ss_pred EEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCcccc
Confidence 9999999762 11222221 122221 2367999999999976321000 0011
Q ss_pred CceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEE
Q 038881 363 PWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILV 442 (794)
Q Consensus 363 p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 442 (794)
+++|+|||+
T Consensus 253 ~~~IsVgA~----------------------------------------------------------------------- 261 (600)
T 3hjr_A 253 FWNLVVSAL----------------------------------------------------------------------- 261 (600)
T ss_dssp SSEEEEEEE-----------------------------------------------------------------------
T ss_pred CcceEEeee-----------------------------------------------------------------------
Confidence 223333322
Q ss_pred EecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCC
Q 038881 443 CLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKP 522 (794)
Q Consensus 443 ~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 522 (794)
..
T Consensus 262 ------------------------------------------------------------------------------~~ 263 (600)
T 3hjr_A 262 ------------------------------------------------------------------------------NA 263 (600)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred ------------------------------------------------------------------------------cC
Confidence 12
Q ss_pred CCccccccCCCCCCCCCCcccCceEeCCceE--------EeeecCCCCCC-------------CCCCCCCCccceeeccc
Q 038881 523 APIMAAFSSKGPSSVAPEILKPDITAPGVTI--------IAAYTEAAGPT-------------NEDYDRRRIPFNALSGT 581 (794)
Q Consensus 523 ~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I--------~Sa~~~~~~~~-------------~~~~~~~~~~y~~~sGT 581 (794)
.+.++.||++|+.. +++|||..+ .+..++..... ..........|..++||
T Consensus 264 ~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGT 335 (600)
T 3hjr_A 264 DGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGT 335 (600)
T ss_dssp TSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSH
T ss_pred CCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccc
Confidence 36788999999988 999999762 22222211000 00111223468899999
Q ss_pred cchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCccccc--------------------CCCCCCCCCccccc
Q 038881 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILN--------------------ASSYKATPFSYGAG 641 (794)
Q Consensus 582 SmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~--------------------~~~~~~~~~~~G~G 641 (794)
|||||||||++|||+|++|+|+++|||++|++||++++....|+.. ..........||+|
T Consensus 336 SmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG 415 (600)
T 3hjr_A 336 SSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFG 415 (600)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTC
T ss_pred cccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCc
Confidence 9999999999999999999999999999999999999876655321 11112235579999
Q ss_pred ccccccccCCCc
Q 038881 642 HIQPNLAMDPGL 653 (794)
Q Consensus 642 ~vn~~~Al~~~l 653 (794)
+||+.+|++...
T Consensus 416 ~vDA~~aV~~A~ 427 (600)
T 3hjr_A 416 LIDVNKALELAA 427 (600)
T ss_dssp BCCHHHHHHHHT
T ss_pred eecHHHHHHHhh
Confidence 999999997543
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-25 Score=253.32 Aligned_cols=97 Identities=27% Similarity=0.430 Sum_probs=76.9
Q ss_pred cccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh---CCceEEEEccCCCCCCC---CCCHHHHHHHHHHhCCc
Q 038881 269 TAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH---DGVDVLSVSLGGGPSKF---FNDSTAIGSFHAVKHGM 342 (794)
Q Consensus 269 ~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~Gv 342 (794)
.+.||||+|+|+.|++. ...+.++++|+||++ ++++|||||||.....+ +...+..++.+|..+||
T Consensus 273 ~~~gvAp~a~i~~~~~~--------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi 344 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP--------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGV 344 (552)
T ss_dssp HHHHHCTTSEEEEEECC--------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCCeEEEEEcC--------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCe
Confidence 45899999999999972 246789999999998 79999999999873211 12346666777889999
Q ss_pred EEEEecCCCCCCC--------CCcCCCCCceEEeccccC
Q 038881 343 VVICSAGNSGPTD--------STVSNIAPWQITVGASTM 373 (794)
Q Consensus 343 ~vV~AAGN~G~~~--------~~~~~~ap~vitVgAs~~ 373 (794)
+||+||||+|... ..++..+|+|++||+++.
T Consensus 345 ~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 345 TVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEEEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999999653 234467899999999754
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-22 Score=214.90 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=79.0
Q ss_pred cccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-CCceEEEEccCCCCC----CCCCCHHHHHHHHHHhCCcEEE
Q 038881 271 KGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVDVLSVSLGGGPS----KFFNDSTAIGSFHAVKHGMVVI 345 (794)
Q Consensus 271 ~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~----~~~~~~~~~a~~~a~~~Gv~vV 345 (794)
..+||+++++.|++.+.. + +..++++++|+||++ ++++|||||||.... ..+.+.+..++.+|..+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~--~--~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv 165 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS--A--SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFS 165 (372)
T ss_dssp HHTTSCEEEEEEEEECTT--S--STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEE
T ss_pred hhcCCCCcEEEEEeCCCC--C--cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 457999999999998654 2 678899999999998 899999999998621 1123456677777889999999
Q ss_pred EecCCCCCCCC-------------CcCCCCCceEEeccccC
Q 038881 346 CSAGNSGPTDS-------------TVSNIAPWQITVGASTM 373 (794)
Q Consensus 346 ~AAGN~G~~~~-------------~~~~~ap~vitVgAs~~ 373 (794)
+||||+|...+ .++..+|+|++||+++.
T Consensus 166 ~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 166 VSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp EECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred EEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 99999997643 23457899999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=99.09 E-value=9.7e-11 Score=105.49 Aligned_cols=81 Identities=14% Similarity=0.012 Sum_probs=68.7
Q ss_pred cccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHHHHHHcCCCe
Q 038881 46 FSMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKV 125 (794)
Q Consensus 46 ~~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V 125 (794)
...+|++|||+|++.... .....|.+|+.+++.+ .....++.|.|++.|+||+++|+++++++|+++|+|
T Consensus 33 ~~~ip~~YIV~lk~~~~~---------~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V 102 (114)
T 2w2n_P 33 PWRLPGTYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHV 102 (114)
T ss_dssp GGEEEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTE
T ss_pred ccCCCCcEEEEECCCCCH---------HHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCc
Confidence 357899999999987532 4556889999988764 234578999999999999999999999999999999
Q ss_pred EEEEecceecc
Q 038881 126 VSVFLNQGRKL 136 (794)
Q Consensus 126 ~~v~~~~~~~~ 136 (794)
.+||+|+.++.
T Consensus 103 ~~VE~D~~v~~ 113 (114)
T 2w2n_P 103 DYIEEDSSVFA 113 (114)
T ss_dssp EEEEEEEEEEE
T ss_pred cEEEeCceEec
Confidence 99999998764
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-10 Score=126.41 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=63.2
Q ss_pred cccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH--hCCceEEEEccCCCCCCC---CCCHHHHHHHHHHhCCcEEE
Q 038881 271 KGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI--HDGVDVLSVSLGGGPSKF---FNDSTAIGSFHAVKHGMVVI 345 (794)
Q Consensus 271 ~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~--~~g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~Gv~vV 345 (794)
.++++...++.+-..+.. ...+.++..+++.. .+.++|||+|||...... +...+...+.++..+||.|+
T Consensus 262 ~a~~~~i~~~~~~~~g~~-----~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~ 336 (544)
T 3edy_A 262 MSAGANISTWVYSSPGRH-----EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLL 336 (544)
T ss_dssp HHHSTTSEEEEECCCSCC-----TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hccCCCceEEEEecCCcc-----cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 455666666655432111 12234555454433 356899999999973211 22335555667889999999
Q ss_pred EecCCCCCCC----------CCcCCCCCceEEeccccC
Q 038881 346 CSAGNSGPTD----------STVSNIAPWQITVGASTM 373 (794)
Q Consensus 346 ~AAGN~G~~~----------~~~~~~ap~vitVgAs~~ 373 (794)
+|+||+|... ..+++.+|||++||+++.
T Consensus 337 ~ASGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 337 FASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp EECCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred EecCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999999643 134567899999999764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=91.62 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=57.3
Q ss_pred ccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHHHHHHcCCCeE
Q 038881 47 SMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVV 126 (794)
Q Consensus 47 ~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~ 126 (794)
..+|++|||+||++... . ..+..+++. ...++.++|++ |+||+++++++++++|+++|+|.
T Consensus 5 ~~i~~~YIV~~k~~~~~---------~--~~~~~~~~~-------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~ 65 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGFKS---------C--AKKEDVISE-------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVA 65 (80)
T ss_dssp ---CCEEEEEECTTCCS---------H--HHHHHHHHT-------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEE
T ss_pred ccCCCCEEEEECCCCCh---------H--HHHHHHHHH-------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCcc
Confidence 46899999999997643 1 112222221 23689999998 99999999999999999999999
Q ss_pred EEEecceecccccC
Q 038881 127 SVFLNQGRKLHTTH 140 (794)
Q Consensus 127 ~v~~~~~~~~~~~~ 140 (794)
+||+|+.++++++.
T Consensus 66 ~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 66 YVEEDKLYRALSAT 79 (80)
T ss_dssp EEEECCEEEECCC-
T ss_pred EEEeCcEEEEeeec
Confidence 99999999887653
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-10 Score=102.69 Aligned_cols=94 Identities=12% Similarity=-0.046 Sum_probs=69.1
Q ss_pred ccccccchhhc-cccccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEe
Q 038881 33 FKSFPFPLILS-FLFSMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKL 111 (794)
Q Consensus 33 ~~~~~~~~~~~-~~~~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~ 111 (794)
.....+|++.. .....+|++|||+||++... .....|.+++.+++.+. ....++.|.|++.|+||++++
T Consensus 29 ~~~~~Apl~~~~~~~~~Ip~~YIV~~K~~~~~---------~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~~~~~GFaa~l 98 (124)
T 2qtw_A 29 EHGTTATFHRCAKDPWRLPGTYVVVLKEETHL---------SQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKM 98 (124)
T ss_dssp ----CCEEECCSSGGGEEEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEEC
T ss_pred cccccccccccCCcccCCCCCEEEEECCCCCH---------HHHHHHHHHHHHHHhhc-ccCCceEEEecccceEEEEEc
Confidence 44456666554 34567999999999997643 33455666665543221 134689999999999999999
Q ss_pred CHHHHHHHHcCCCeEEEEecceecc
Q 038881 112 DDAVAAEIAKHPKVVSVFLNQGRKL 136 (794)
Q Consensus 112 ~~~~i~~L~~~p~V~~v~~~~~~~~ 136 (794)
+++++++|+++|+|.+|++|+.++.
T Consensus 99 ~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 99 SGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CHHHHHHHHcCCCCcEEEeCceEec
Confidence 9999999999999999999998764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-08 Score=96.10 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=75.9
Q ss_pred hccccCCCCCCCCC-------ccceEEEEecCC-chhhhHHHHHHHcCceEEEEeccCCCCccc----cCCCCcccEEEE
Q 038881 422 VALLCEAGTLDPKK-------VKGKILVCLRGD-NARIDKGQQALLAGAVGMVLANAQENGNEL----LADPHLLPASHI 489 (794)
Q Consensus 422 ~~~~c~~~~~~~~~-------~~gkivl~~~g~-~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~----~~~~~~~p~~~i 489 (794)
+...|.+..+.... .++||+|++||. |+|.+|..+|+++||.++|+||+...+... ......+|+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 45789887653222 579999999999 999999999999999999999985322211 122357999999
Q ss_pred eccchHHHHHHHhcCCCcEEEEEece
Q 038881 490 NFTDGADLFRDVNSTKRPVGYLTRAT 515 (794)
Q Consensus 490 ~~~~g~~l~~~~~~~~~~~~~i~~~~ 515 (794)
+..+|+.|++++..+...+++|....
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999988888887764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=82.85 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=58.5
Q ss_pred ccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEec-ceeeeEEEEeCHHHHHHHHcC--CCeEE
Q 038881 51 THHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYT-RHINGFAAKLDDAVAAEIAKH--PKVVS 127 (794)
Q Consensus 51 ~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~-~~~ng~s~~~~~~~i~~L~~~--p~V~~ 127 (794)
++|||+||++.+. ...+.|.+++...- .++.+.|. ..|+||+++++++.+++|+++ |.|.+
T Consensus 3 ~sYIV~lk~~~~~---------~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~ 66 (76)
T 1v5i_B 3 GKFIVIFKNDVSE---------DKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (76)
T ss_dssp EEEEEEECTTCCH---------HHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred ceEEEEECCCCCH---------HHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcE
Confidence 6899999997643 45567777777652 46889994 799999999999999999999 89999
Q ss_pred EEecceecc
Q 038881 128 VFLNQGRKL 136 (794)
Q Consensus 128 v~~~~~~~~ 136 (794)
||+|+.+++
T Consensus 67 VE~D~~v~~ 75 (76)
T 1v5i_B 67 IEEDHVAHA 75 (76)
T ss_dssp EEECCEEEC
T ss_pred EcCCcEEeC
Confidence 999998764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00028 Score=56.22 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=38.9
Q ss_pred CcceEEEecceeeeEEEEeCHHHHHHHHcCCCeEEEEecceec
Q 038881 93 EDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRK 135 (794)
Q Consensus 93 ~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~ 135 (794)
+.++.++|. .+++++++++.+.++.|+++|+|++||+|...+
T Consensus 22 gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 22 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 478999998 899999999999999999999999999998764
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0028 Score=70.29 Aligned_cols=73 Identities=25% Similarity=0.334 Sum_probs=59.8
Q ss_pred CCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc--cc-CCCCcccEEEEeccchHHHHHHHh
Q 038881 430 TLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE--LL-ADPHLLPASHINFTDGADLFRDVN 502 (794)
Q Consensus 430 ~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l~~~~~ 502 (794)
++...+++|||||++++.|.|..|..+|+++||.|+|++++...... +. .....+|++.|+.++++.|..++.
T Consensus 107 D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 107 DVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred hcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 44445899999999999999999999999999999999998642211 11 134679999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.021 Score=63.69 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=61.4
Q ss_pred CCCccceEEEEecCCch---------hhhH----HHHHHHcCceEEEEeccCCCCcc--------ccCCCCcccEEEEec
Q 038881 433 PKKVKGKILVCLRGDNA---------RIDK----GQQALLAGAVGMVLANAQENGNE--------LLADPHLLPASHINF 491 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~---------~~~~----~~~~~~~Ga~gvi~~n~~~~~~~--------~~~~~~~~p~~~i~~ 491 (794)
..+++|||||++++.|. +..| ..+|.++||.|+|++++...... .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 56899999999998884 3444 35799999999999997542211 111235799999999
Q ss_pred cchHHHHHHHhcCCCcEEEEEec
Q 038881 492 TDGADLFRDVNSTKRPVGYLTRA 514 (794)
Q Consensus 492 ~~g~~l~~~~~~~~~~~~~i~~~ 514 (794)
++++.|+..+..+...++++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998876666665543
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0056 Score=71.74 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=56.6
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCC----C---------------------------ccccC--
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQEN----G---------------------------NELLA-- 479 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~----~---------------------------~~~~~-- 479 (794)
..+++|||+|+++|.|.+.+|..+|+++||.|+|+|++... + ....+
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 45799999999999999999999999999999999986320 0 00000
Q ss_pred ---------------CCCcccEEEEeccchHHHHHHHhc
Q 038881 480 ---------------DPHLLPASHINFTDGADLFRDVNS 503 (794)
Q Consensus 480 ---------------~~~~~p~~~i~~~~g~~l~~~~~~ 503 (794)
....||++.|+..+++.|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 124689999999999999997754
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.014 Score=67.65 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc------------------ccc----------------C
Q 038881 434 KKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN------------------ELL----------------A 479 (794)
Q Consensus 434 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~------------------~~~----------------~ 479 (794)
.+++|||||+++|.|.+.+|..+|+++||.|+|+|++..... ... .
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 589999999999999999999999999999999999753210 000 0
Q ss_pred CCCcccEEEEeccchHHHHHHHh
Q 038881 480 DPHLLPASHINFTDGADLFRDVN 502 (794)
Q Consensus 480 ~~~~~p~~~i~~~~g~~l~~~~~ 502 (794)
....+|+..|+..+++.|+..+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 12368999999999999988664
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.047 Score=49.12 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=54.0
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEeCCccEE
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQV 785 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~~~~~~v 785 (794)
...+.+++++|+|. +..|++....| ++++|.+.++ ++|++..++|+|.+.. .+.+.+.+.+.-+++..+
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~~-----~g~~~~~l~v~~~~g~~~ 110 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQS-----VGDHSGRLIVCYDTGEKV 110 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCSS-----SBCCCCBCEEEESSSCEE
T ss_pred CeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcCC-----CccEEEEEEEEECCCCEE
Confidence 67888999999999 88888876543 7889999999 7999999999998865 223455555543244555
Q ss_pred EeEE
Q 038881 786 RSPI 789 (794)
Q Consensus 786 ~~P~ 789 (794)
.+++
T Consensus 111 ~v~L 114 (122)
T 2ys4_A 111 FVSL 114 (122)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 5543
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.47 E-value=0.29 Score=60.55 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.5
Q ss_pred ccCCCCceEEEEecCCCCCCCCCCcC
Q 038881 161 KARYGEDTIIGNLDTGVWPESKSFSD 186 (794)
Q Consensus 161 ~g~~G~GV~VaVIDTGId~~Hp~f~~ 186 (794)
..+.|+||+|||+|||||+.+|-|+-
T Consensus 31 P~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 31 PEYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TTCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCCccEEEEEeCCCCCCCCccee
Confidence 35799999999999999999999963
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.59 E-value=6.4 Score=35.89 Aligned_cols=86 Identities=16% Similarity=0.036 Sum_probs=60.6
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCC----CCcEEEEEccEEEEecCCcEEEEEEEEEEccc--ccC-C-CCeEEEEEEE
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRNP----KGISVSVEPRSLKFLRVGEEKNFKVTIKVRKV--RAA-T-KDYVFGDLVW 777 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~~----~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~--~~~-~-~~~~~G~~~~ 777 (794)
...+-+++++|.|. +.+|++..... ..--++++|..-++ .+|++.++.|++.++.. ... . ..-++--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 55678899999999 99999985321 12236778999999 79999999999987542 000 1 1223556777
Q ss_pred EeCCccEEEeEEEEEe
Q 038881 778 ADDKQHQVRSPIVVNP 793 (794)
Q Consensus 778 ~~~~~~~v~~P~~~~~ 793 (794)
.=.++....||+-..|
T Consensus 122 ~Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNY 137 (140)
T ss_dssp EETTSCEEEEEEEEEE
T ss_pred EeecCCcEEEEEeccc
Confidence 6446788889987655
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=0.48 Score=52.47 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=26.0
Q ss_pred CCccccccCCCCCCCCCCcccCceEeCCceEEeeecC
Q 038881 523 APIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTE 559 (794)
Q Consensus 523 ~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~ 559 (794)
.+.++.||++|+.+ ||+|||++|+++++.
T Consensus 183 ~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 183 NLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp TCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 46899999999876 999999999999874
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=80.71 E-value=6.1 Score=34.81 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=43.6
Q ss_pred eEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 708 SIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 708 ~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
.-.+++.+.|... +.+|.++++..+++++. .+..+++ ++++..++.|.+....
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 3577888999999 99999999887776653 3556888 7999999999999876
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.11 E-value=1.7 Score=37.81 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=43.3
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeC-CCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRN-PKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~-~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
...+.+++++|.|+ +..|++.... +.+..++++|..-++ .+|++++++|++.+..
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII 82 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC
Confidence 46778899999999 9999984321 113457789999888 7899999999998854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 794 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-39 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 4e-07 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 3e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-09 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-08 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 2e-09 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 4e-09 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-06 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 9e-09 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 4e-07 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 4e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-04 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 9e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 0.001 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 0.002 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 149 bits (376), Expect = 2e-39
Identities = 78/442 (17%), Positives = 139/442 (31%), Gaps = 68/442 (15%)
Query: 232 NSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG 291
++ P + + HGTH T +G G P + V G
Sbjct: 53 TGNWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPNQNANIHIVKVFNEAG 103
Query: 292 NECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNS 351
+ + A G +V+++SLGG S + +G+++I +AGN+
Sbjct: 104 WGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNA---LNTHYNNGVLLIAAAGNA 160
Query: 352 GPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAA 411
G + + ++V A + D ++ ++ +
Sbjct: 161 GDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVE------------------ISGPG 202
Query: 412 DAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471
+A + + L + ++ R + + A A G LA
Sbjct: 203 EAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGA-LAECT 261
Query: 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSS 531
NG S N + L V + + I+ +S
Sbjct: 262 VNGTSF---------SCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNS 312
Query: 532 KGPSSVAPEIL--KPDITAPGVTIIAAYTEA----AGPTNEDYDRRRIPFNALSGTSMSC 585
P P ++ DIT P V++ A A G + ++ + +GTSM+
Sbjct: 313 ALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMAT 372
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHVSG+ L+ + HPE S + +++A+ TA G G I
Sbjct: 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINA 421
Query: 646 NLAMDPGLVYDLTENDYLNFLC 667
A YL+ C
Sbjct: 422 VAAK-----------AYLDESC 432
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 67.0 bits (162), Expect = 6e-12
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 544 PDITAPGVTIIAAYTEAAGPTNEDYDRRRIP-----FNALSGTSMSCPHVSGIVGLLKTL 598
+ APGVTI++ E ++ ++ GTSM+ PHV+G+V +L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 599 HPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGL 653
P P I+ + TA N + + G G ++ + A+ L
Sbjct: 398 FPNAKPWQIRKLLENTA--------FDFNGNGW---DHDTGYGLVKLDAALQGPL 441
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 51.2 bits (121), Expect = 4e-07
Identities = 40/236 (16%), Positives = 66/236 (27%), Gaps = 49/236 (20%)
Query: 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKL 214
+ +W++A G + I+ +DTGV
Sbjct: 144 TQQLWEEAS-GTNIIVAVVDTGVDGTHPDLEG---------------------------- 174
Query: 215 IGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGS 274
GY A + GTH T G +
Sbjct: 175 ----QVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD---------GKGIVGVA 221
Query: 275 PKARVAAYKVCWPPVTGNE---CYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTA 331
P A++ + P D + A A G V++ S GG ++ +
Sbjct: 222 PGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG---WGYSYTMK 278
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVS-NIAPWQITVGASTMDRDFPSYVVVSNN 386
+A++HG+V++ SAGN+ P I V A S+
Sbjct: 279 EAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSR 334
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 63.0 bits (151), Expect = 3e-11
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602
+I+APG ++ + + +N +SGTSM+ PHVSG+ + +P
Sbjct: 224 DIEISAPGSSVYSTWYNGG-------------YNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 603 SPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
S ++S + A D G + ++ G G +
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFGFAR 308
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 57.7 bits (138), Expect = 1e-09
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 27/124 (21%)
Query: 525 IMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMS 584
+ A S+ +S + + ++ APG + + Y + L+GTSM+
Sbjct: 176 VGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNT-------------YATLNGTSMA 222
Query: 585 CPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
PHV+G L+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLIN 268
Query: 645 PNLA 648
A
Sbjct: 269 VEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 54.6 bits (130), Expect = 1e-08
Identities = 48/295 (16%), Positives = 95/295 (32%), Gaps = 59/295 (20%)
Query: 152 RVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCN 211
++++ + + G + + LDTG+
Sbjct: 10 LIKADKVQAQGFKGANVKVAVLDTGIQASHPDL--------------------------- 42
Query: 212 RKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAK 271
++G F G D +GHGTH T +
Sbjct: 43 -NVVGGASFVAGE-----------AYNTDGNGHGTHVAGTVAALDNTTGVLGV------- 83
Query: 272 GGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTA 331
+P + A KV + I++ + A +G+DV+++S + +
Sbjct: 84 --APSVSLYAVKVLNS---SGSGSYSGIVSGIEWATTNGMDVINMS---LGGASGSTAMK 135
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQ----ITVGASTMDRDFPSYVVVSNNK 387
+A G+VV+ +AGNSG + ST + P + I VGA + + S+ V
Sbjct: 136 QAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAEL 195
Query: 388 RYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVAL-LCEAGTLDPKKVKGKIL 441
+ ++ + + + AL L + L +V+ ++
Sbjct: 196 EVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 250
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 14/72 (19%), Positives = 27/72 (37%)
Query: 579 SGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSY 638
+GTS S P +GI+ L + + ++ ++ T+ N + SY
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 316
Query: 639 GAGHIQPNLAMD 650
G G + +
Sbjct: 317 GYGLLDAGAMVA 328
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 56.1 bits (134), Expect = 4e-09
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 35/124 (28%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
A+FS G DI APGV N + +L+GTSM+
Sbjct: 180 RASFSQYGAG--------LDIVAPGV-------------NVQSTYPGSTYASLNGTSMAT 218
Query: 586 PHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQP 645
PHV+G L+K +P WS I++ + TA+ + YG+G +
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN--------------LYGSGLVNA 264
Query: 646 NLAM 649
A
Sbjct: 265 EAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 16/207 (7%)
Query: 236 DTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECY 295
+ +D +GHGTH T G +P A + A KV +G+
Sbjct: 54 PSTQDGNGHGTHVAGT---------IAALNNSIGVLGVAPSAELYAVKVLGASGSGSVS- 103
Query: 296 DADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD 355
I + A ++G+ V ++SL S + + A G++V+ ++GNSG
Sbjct: 104 --SIAQGLEWAGNNGMHVANLSL---GSPSPSATLEQAVNSATSRGVLVVAASGNSGAGS 158
Query: 356 STVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKA 415
+ + VGA+ + + S+ ++ + + ++
Sbjct: 159 ISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMAT 218
Query: 416 ANASTEVALLCEA-GTLDPKKVKGKIL 441
+ + AL+ + + +++ +
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLK 245
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 55.3 bits (132), Expect = 9e-09
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 27/108 (25%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602
+ D+ APGV+I + Y +GTSM+ PHV+G L+ + HP W
Sbjct: 195 ELDVMAPGVSIQSTLP------GNKYGAY-------NGTSMASPHVAGAAALILSKHPNW 241
Query: 603 SPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650
+ ++S++ T + + F YG G I A
Sbjct: 242 TNTQVRSSLENTTTKLGD--------------SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 49.9 bits (118), Expect = 4e-07
Identities = 50/295 (16%), Positives = 96/295 (32%), Gaps = 58/295 (19%)
Query: 152 RVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCN 211
++++ ++ + G + + +D+G+
Sbjct: 10 QIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL--------------------------- 42
Query: 212 RKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAK 271
K+ G S + +D + HGTH VA
Sbjct: 43 -KVAGGASMV----------PSETNPFQDNNSHGTH---------VAGTVAALNNSIGVL 82
Query: 272 GGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTA 331
G +P A + A KV +G + I+ + AI + +DV+++SLGG +
Sbjct: 83 GVAPSASLYAVKVLGADGSG---QYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAV 139
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVS----NIAPWQITVGASTMDRDFPSYVVVSNNK 387
AV G+VV+ +AGN G + S+ + P I VGA S+ V
Sbjct: 140 ---DKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPEL 196
Query: 388 RYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEA-GTLDPKKVKGKIL 441
+S + + + + + + AL+ +V+ +
Sbjct: 197 DVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLE 251
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 542 LKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE 601
+KPD+ APG I++A + A ++ + + + GTSM+ P V+G V L+ +
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 602 -----WSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650
P+ +K+A++ A + G G + + +++
Sbjct: 275 NRGITPKPSLLKAALIAGA-----------ADIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 565 NEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616
+ ++SGTSM+ PHV+G+ L TL + +A + I TA+
Sbjct: 207 DILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTAN 257
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 579 SGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS-IQDNNKGQILNASSYKATPFS 637
GTS + P +G+ LL +P + ++ + +A ++ N G +++ K
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320
Query: 638 YGAGHIQPNLAMD 650
YG G I + ++
Sbjct: 321 YGFGKIDAHKLIE 333
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 3e-06
Identities = 42/290 (14%), Positives = 79/290 (27%), Gaps = 52/290 (17%)
Query: 152 RVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCN 211
++ W + I +DTGV + + D
Sbjct: 17 NTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMD-------- 68
Query: 212 RKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAK 271
+ H + N
Sbjct: 69 --------------------------LNNHGTHVAGIAAAETNNA-----------TGIA 91
Query: 272 GGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTA 331
G +P R+ A + +G +DI A A G +V+++SLG ++
Sbjct: 92 GMAPNTRILAVRALDRNGSG---TLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN-- 146
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391
+A G VV+ +AGN+G + + I VGA S+
Sbjct: 147 -AVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTWVDVVA 205
Query: 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKIL 441
+ + + +S + + + ALL G + +++ I
Sbjct: 206 PGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQG-RNNIEIRQAIE 254
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 561 AGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDN 620
A + + +SGTSM+ PHV+G+ LL + I+ AI T
Sbjct: 205 APGVDIVSTITGNRYAYMSGTSMASPHVAGLAALL--ASQGRNNIEIRQAIEQT------ 256
Query: 621 NKGQILNASSYKATPFSYGAGHIQPNLAMD 650
A T + G I A+
Sbjct: 257 -------ADKISGTGTYFKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 45.9 bits (107), Expect = 9e-06
Identities = 45/290 (15%), Positives = 79/290 (27%), Gaps = 53/290 (18%)
Query: 152 RVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCN 211
++++ W A G I +DTGV + + +G + +
Sbjct: 17 KIQAPQAWDIAE-GSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHC 75
Query: 212 RKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAK 271
+ A N A
Sbjct: 76 AGIAAAVTNNSTGIA--------------------------------------------- 90
Query: 272 GGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTA 331
G +PKA + A +V +G + A G V+S+SLGG
Sbjct: 91 GTAPKASILAVRVLDNSGSGTWTA---VANGITYAADQGAKVISLSLGGTVGNSGLQQ-- 145
Query: 332 IGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391
+A G VV+ +AGN+G T I V ++ + + S+ +
Sbjct: 146 -AVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAA 204
Query: 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKIL 441
S + +S + + LL G ++ I
Sbjct: 205 PGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQG-RSASNIRAAIE 253
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 561 AGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDN 620
A ++ + +LSGTSM+ PHV+G+ GLL S + I++AI TA D
Sbjct: 204 APGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA---DK 258
Query: 621 NKGQILNASSYKATPFSYGAGHIQPNLAMD 650
G T + G + A+
Sbjct: 259 ISG----------TGTYWAKGRVNAYKAVQ 278
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 38.8 bits (89), Expect = 0.002
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 14/142 (9%)
Query: 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYK 283
+ +A G + + T + +G ++ G L + G + A
Sbjct: 47 FTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEWD------LDSQSIVGSAGGAVQQLLF 100
Query: 284 VCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFH-----AV 338
+ + + AF+ A+ D V + G N + + A
Sbjct: 101 YMAD---QSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAA 157
Query: 339 KHGMVVICSAGNSGPTDSTVSN 360
G S+G+ G +
Sbjct: 158 AQGQTFSVSSGDEGVYECNNRG 179
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 794 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.85 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.76 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.63 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.23 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.21 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=6.3e-54 Score=504.57 Aligned_cols=374 Identities=22% Similarity=0.212 Sum_probs=273.5
Q ss_pred ccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHH----HHH--H
Q 038881 47 SMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVA----AEI--A 120 (794)
Q Consensus 47 ~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i----~~L--~ 120 (794)
+.++++|||+||+.. ...++++.+ . .++.+.+. .++.+.++++...+ +.+ .
T Consensus 28 ~~~~~~~iV~~k~~~---------------~~~~~~~~~-~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (671)
T d1r6va_ 28 EYTEGKILVGYNDRS---------------EVDKIVKAV-N------GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKAL 84 (671)
T ss_dssp SBCTTEEEEEESSHH---------------HHHHHHHHH-T------CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTS
T ss_pred CcCCCeEEEEECCcc---------------CHHHHHHhc-C------CEEEEEec-ccceEEEEcCchhHHHHHHHHHHh
Confidence 478999999999842 222333333 1 45566666 56777777754332 233 3
Q ss_pred cCCCeEEEEecceeccccc---------------------------CCccccccccCCCccccccccccCCCCceEEEEe
Q 038881 121 KHPKVVSVFLNQGRKLHTT---------------------------HSWEFLGLERNGRVESNSIWKKARYGEDTIIGNL 173 (794)
Q Consensus 121 ~~p~V~~v~~~~~~~~~~~---------------------------~s~~~~gl~~~~~~~~~~~~~~g~~G~GV~VaVI 173 (794)
.+|+|++|||+....+... .....|+++.+. +..+|....+|+||+||||
T Consensus 85 ~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~---~~~a~~~~~tG~gV~VaVi 161 (671)
T d1r6va_ 85 ALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG---VTQQLWEEASGTNIIVAVV 161 (671)
T ss_dssp CCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT---CCHHHHHHCSCTTCEEEEE
T ss_pred cCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcC---ccHHHHhcCCCCCCEEEEE
Confidence 5799999999865443210 001124444332 4455555679999999999
Q ss_pred cCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeeccc
Q 038881 174 DTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAG 253 (794)
Q Consensus 174 DTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiia 253 (794)
|||||++||+|.++ ++..+++..+.. .+...++.|..||||||||||+
T Consensus 162 DtGvd~~Hpdl~~~--------------------------~~~~~~~~~~~~------~~~~~~~~d~~gHGT~VAGiia 209 (671)
T d1r6va_ 162 DTGVDGTHPDLEGQ--------------------------VIAGYRPAFDEE------LPAGTDSSYGGSAGTHVAGTIA 209 (671)
T ss_dssp ESCCBTTSGGGTTT--------------------------BCCEEEGGGTEE------ECTTCBCCTTCSHHHHHHHHHH
T ss_pred cCCcCCCChhhcCC--------------------------cccCccccccCC------CCCCCcCcccCCCCccccceee
Confidence 99999999999754 233333332210 0012345678899999999999
Q ss_pred ccccccccccccCCCcccccCCCceEEEEEeecCC----CCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCCCCH
Q 038881 254 GNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPP----VTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDS 329 (794)
Q Consensus 254 g~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~----~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 329 (794)
|.. ++..+.||||+|+|+++|++++. ..| ......+++||+||+++|++|||||||+. .....
T Consensus 210 a~~---------~~~g~~GvAp~a~l~~~rv~~~~~~~~~~g-~~~~~~i~~ai~~a~~~g~~Vin~S~g~~---~~~~~ 276 (671)
T d1r6va_ 210 AKK---------DGKGIVGVAPGAKIMPIVIFDDPALVGGNG-YVGDDYVAAGIIWATDHGAKVMNHSWGGW---GYSYT 276 (671)
T ss_dssp CCC---------SSSSCCCSCTTSEEEEEESBCCHHHHCTTS-BCCHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHH
T ss_pred eec---------cccceeeecCcceEEEEEecccccccCCCC-cccHHHHHHHHHHHHhCCCcEEecccccc---cCChH
Confidence 975 22345899999999999999752 113 46778899999999999999999999986 24456
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceE
Q 038881 330 TAIGSFHAVKHGMVVICSAGNSGPTDS-TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLI 408 (794)
Q Consensus 330 ~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv 408 (794)
+..++..+.++|+++|+||||++.+.. ..+...|++|+|||++....
T Consensus 277 ~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~-------------------------------- 324 (671)
T d1r6va_ 277 MKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG-------------------------------- 324 (671)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT--------------------------------
T ss_pred HHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCC--------------------------------
Confidence 778888999999999999999987653 45567899999998643210
Q ss_pred EccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEE
Q 038881 409 SAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASH 488 (794)
Q Consensus 409 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~ 488 (794)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCC--
Q 038881 489 INFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNE-- 566 (794)
Q Consensus 489 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~-- 566 (794)
...+++||+|||.+ ||+|||++|+|+++........
T Consensus 325 ----------------------------------~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~ 362 (671)
T d1r6va_ 325 ----------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGH 362 (671)
T ss_dssp ----------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCC
T ss_pred ----------------------------------cceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccc
Confidence 12678999999987 9999999999998754322111
Q ss_pred ---CCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccccccc
Q 038881 567 ---DYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHI 643 (794)
Q Consensus 567 ---~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~v 643 (794)
......+.|..++|||||||||||++|||+|++|+|++.|||++|++||++++.. ..+..||||+|
T Consensus 363 ~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~v 431 (671)
T d1r6va_ 363 NENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLV 431 (671)
T ss_dssp CTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBC
T ss_pred cccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChh
Confidence 1122356899999999999999999999999999999999999999999987543 34678999999
Q ss_pred ccccccCCCcccc
Q 038881 644 QPNLAMDPGLVYD 656 (794)
Q Consensus 644 n~~~Al~~~lv~~ 656 (794)
|+.+||+..+...
T Consensus 432 na~~Av~~~~~~~ 444 (671)
T d1r6va_ 432 KLDAALQGPLPTQ 444 (671)
T ss_dssp CHHHHHHCCCCSS
T ss_pred CHHHHhhCcCCCC
Confidence 9999998765443
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.4e-49 Score=447.24 Aligned_cols=380 Identities=21% Similarity=0.264 Sum_probs=247.2
Q ss_pred cccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccccc
Q 038881 145 LGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY 224 (794)
Q Consensus 145 ~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~ 224 (794)
||+..+. ++.+|. .+|+||+|||||||||++||+|+++ ++..+++...
T Consensus 6 wg~~~i~---a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~--------------------------~~~~~~~~~~- 53 (435)
T d1v6ca_ 6 WGQTFVG---ATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT- 53 (435)
T ss_dssp HHHHHTT---GGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS-
T ss_pred ccHhhcC---cchhhh--cCCCCcEEEEEcCCCCCCChhhccC--------------------------eeeeeccCCC-
Confidence 4665544 556666 4899999999999999999999753 2223333221
Q ss_pred ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCC--CceEEEEEeecCCCCCCCCChHHHHHH
Q 038881 225 AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSP--KARVAAYKVCWPPVTGNECYDADILAA 302 (794)
Q Consensus 225 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP--~A~L~~~kv~~~~~~G~~~~~~~i~~a 302 (794)
.+...+.|++||||||||||||+. .+..+.|||| +++|+.+|++.... .+...++++|
T Consensus 54 --------~~~~~~~d~~gHGThvAgiiag~~---------~~~g~~GvAp~~~~~l~~~~~~~~~~---~~~~~~~~~a 113 (435)
T d1v6ca_ 54 --------GNWYQPGNNNAHGTHVAGTIAAIA---------NNEGVVGVMPNQNANIHIVKVFNEAG---WGYSSSLVAA 113 (435)
T ss_dssp --------CCTTCCCSSCCHHHHHHHHHHCCC---------SSSBCCCSSCSSCSEEEEEECEETTE---ECCSSCHHHH
T ss_pred --------CCCCCCCCCCCcHHHHHHHHhccC---------CCCceEEEecccCceeeeeecccccc---cchhhhhhhH
Confidence 013356789999999999999975 1234589999 89999999988763 3567789999
Q ss_pred HHHhHh-CCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceE
Q 038881 303 FDMAIH-DGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYV 381 (794)
Q Consensus 303 i~~a~~-~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~ 381 (794)
|+++++ .+++|||+|||... ....+..++..+.++|++||+||||+|....++++.++++|+|||++.+.....+.
T Consensus 114 ~~~a~~~~~~~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s 190 (435)
T d1v6ca_ 114 IDTCVNSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFS 190 (435)
T ss_dssp HHHHHHTTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTS
T ss_pred HHHHhhcccceEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCccccc
Confidence 999986 59999999999873 34456677788999999999999999998888888999999999998776543322
Q ss_pred EecCCeEE--eeeecCCCCCCCCce-------------------eceEEccchhhccc----chhhcccc--CCCCCCCC
Q 038881 382 VVSNNKRY--KGQSLSSKGLPSNKL-------------------FPLISAADAKAANA----STEVALLC--EAGTLDPK 434 (794)
Q Consensus 382 ~~~~~~~~--~g~~~~~~~~~~~~~-------------------~plv~~~~~~~~~~----~~~~~~~c--~~~~~~~~ 434 (794)
..+....+ .|..+.......... ..+........... .......| ....+...
T Consensus 191 ~~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (435)
T d1v6ca_ 191 QYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCG 270 (435)
T ss_dssp CCCSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECC
T ss_pred CCCCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecc
Confidence 22221111 111100000000000 00000000000000 00000001 11122234
Q ss_pred CccceEEEEecCC-----chhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEE
Q 038881 435 KVKGKILVCLRGD-----NARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVG 509 (794)
Q Consensus 435 ~~~gkivl~~~g~-----~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 509 (794)
++.+++.++.+.. .........+...++.+++.+++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 312 (435)
T d1v6ca_ 271 NMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNS-------------------------------------- 312 (435)
T ss_dssp CCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCS--------------------------------------
T ss_pred ccccccceeeccCCccccceeeeeceeecccCCcceEEeccC--------------------------------------
Confidence 5667777776633 234455556666666666555432
Q ss_pred EEEeceeeecCCCCCccccccCCCCCCC--CCCcccCceEeCCceEEeeecCCC----CCCCCCCCCCCccceeeccccc
Q 038881 510 YLTRATTELGLKPAPIMAAFSSKGPSSV--APEILKPDITAPGVTIIAAYTEAA----GPTNEDYDRRRIPFNALSGTSM 583 (794)
Q Consensus 510 ~i~~~~~~~~~~~~~~~a~fSS~Gp~~~--~~~~~KPDI~APG~~I~Sa~~~~~----~~~~~~~~~~~~~y~~~sGTSm 583 (794)
.+|... ..+..||||.+||..|.++..... ...........+.|..||||||
T Consensus 313 ----------------------~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSM 370 (435)
T d1v6ca_ 313 ----------------------ALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSM 370 (435)
T ss_dssp ----------------------SSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHH
T ss_pred ----------------------CCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHH
Confidence 222211 124578999999988875532100 0000000112357999999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccC
Q 038881 584 SCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 584 AaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
|||||||++|||+|+||+|+++|||++||+||+++.. .+++++||+|+||+.+|++
T Consensus 371 AaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 371 ATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC-----------CCCCCCcccceecHHHHHH
Confidence 9999999999999999999999999999999998732 4567899999999999964
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=5e-49 Score=416.16 Aligned_cols=267 Identities=27% Similarity=0.338 Sum_probs=217.3
Q ss_pred cccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccccc
Q 038881 145 LGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY 224 (794)
Q Consensus 145 ~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~ 224 (794)
|+++.+. ++.+|+++++|+||+|||||||||++||+|.++ ++..++|...
T Consensus 13 w~l~~i~---~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~--------------------------~~~~~~~~~~- 62 (280)
T d1dbia_ 13 YGPQNTY---TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN- 62 (280)
T ss_dssp CTTGGGT---HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT-
T ss_pred cChhhCC---HHHHHhccCCCCCeEEEEEccCcCCCChhhcCC--------------------------eeecccccCC-
Confidence 4555443 789999999999999999999999999999743 4444555432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHH
Q 038881 225 AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFD 304 (794)
Q Consensus 225 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~ 304 (794)
...+.|.++|||||||+|++... ....+.||||+|+|+.+|+++.+ + .+...++++||+
T Consensus 63 ----------~~~~~d~~~HGT~vag~i~~~~~--------~~~~~~GvAp~a~l~~~~v~~~~--~-~~~~~~~~~ai~ 121 (280)
T d1dbia_ 63 ----------DYDPMDLNNHGTHVAGIAAAETN--------NATGIAGMAPNTRILAVRALDRN--G-SGTLSDIADAII 121 (280)
T ss_dssp ----------BSCCCCSSSHHHHHHHHHHCCCS--------SSSSCCCSSSSCEEEEEECCCTT--S-CCCHHHHHHHHH
T ss_pred ----------CCccccccccccceeEeeecccc--------CCCceeEEeccCEEEEEEEeCCC--C-CcCHHHHHHHHH
Confidence 23567889999999999998742 23456899999999999999876 3 578999999999
Q ss_pred HhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEec
Q 038881 305 MAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVS 384 (794)
Q Consensus 305 ~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~ 384 (794)
+++++|++|||||||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 122 ~a~~~g~~iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~----------- 187 (280)
T d1dbia_ 122 YAADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ----------- 187 (280)
T ss_dssp HHHHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-----------
T ss_pred HHHHcCCcEeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC-----------
Confidence 999999999999999872 334456677789999999999999999777777778899999998543
Q ss_pred CCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceE
Q 038881 385 NNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVG 464 (794)
Q Consensus 385 ~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 464 (794)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccC
Q 038881 465 MVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKP 544 (794)
Q Consensus 465 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 544 (794)
.+.++.||++||..
T Consensus 188 ----------------------------------------------------------~~~~a~~S~~g~~~-------- 201 (280)
T d1dbia_ 188 ----------------------------------------------------------YDRLASFSNYGTWV-------- 201 (280)
T ss_dssp ----------------------------------------------------------TSCBCTTBCCSTTC--------
T ss_pred ----------------------------------------------------------CCCcCCcCCCCCcc--------
Confidence 24788999999987
Q ss_pred ceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcc
Q 038881 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQ 624 (794)
Q Consensus 545 DI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~ 624 (794)
|++|||.+|++.... ..|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 202 d~~apg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~---- 262 (280)
T d1dbia_ 202 DVVAPGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG---- 262 (280)
T ss_dssp CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT----
T ss_pred cccCCccceeccccC-------------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC----
Confidence 999999999998876 48899999999999999999999995 56899999999999987632
Q ss_pred cccCCCCCCCCCcccccccccccccC
Q 038881 625 ILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 625 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
++..||+|+||+++||+
T Consensus 263 ---------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 ---------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp ---------BTTTBSSEECCHHHHHT
T ss_pred ---------CCCcCCCCeEcHHHHcC
Confidence 35679999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=4.4e-49 Score=415.68 Aligned_cols=265 Identities=28% Similarity=0.435 Sum_probs=220.0
Q ss_pred cccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccccc
Q 038881 145 LGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY 224 (794)
Q Consensus 145 ~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~ 224 (794)
|||+.+. ++.+|.++++|+||+|||||||||++||+|+ +...++|..+
T Consensus 6 wgl~~i~---~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~----------------------------~~~~~~~~~~- 53 (274)
T d1r0re_ 6 YGIPLIK---ADKVQAQGFKGANVKVAVLDTGIQASHPDLN----------------------------VVGGASFVAG- 53 (274)
T ss_dssp THHHHTT---HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC----------------------------EEEEEECSTT-
T ss_pred cchhhcC---hHHHHHcCCCCCCeEEEEECCCCCCCChhhc----------------------------ccCCccccCC-
Confidence 4665543 6789999999999999999999999999995 2234455543
Q ss_pred ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHH
Q 038881 225 AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFD 304 (794)
Q Consensus 225 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~ 304 (794)
...+.|.++|||||||||++.. ....+.|+||+|+|+.+|+++.. + .+..++++++++
T Consensus 54 ----------~~~~~d~~gHGT~vAgii~~~~---------~~~~~~gvap~a~i~~~~~~~~~--~-~~~~~~i~~ai~ 111 (274)
T d1r0re_ 54 ----------EAYNTDGNGHGTHVAGTVAALD---------NTTGVLGVAPSVSLYAVKVLNSS--G-SGSYSGIVSGIE 111 (274)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCS---------SSSBCCCSSTTSEEEEEECSCTT--S-EECHHHHHHHHH
T ss_pred ----------CCCCCCcccccccccccccccc---------ccccccccCCCcEEEEEEEeCCC--C-CcCHHHHHHHHH
Confidence 2345678899999999999875 22335899999999999999876 3 467899999999
Q ss_pred HhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC----CcCCCCCceEEeccccCCCCccce
Q 038881 305 MAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS----TVSNIAPWQITVGASTMDRDFPSY 380 (794)
Q Consensus 305 ~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~----~~~~~ap~vitVgAs~~~~~~~~~ 380 (794)
++.+++++|+|+|||... ..........++.++++++|+||||+|.... ..+...+++|+|||++.+
T Consensus 112 ~a~~~~~~i~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------ 182 (274)
T d1r0re_ 112 WATTNGMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------ 182 (274)
T ss_dssp HHHHTTCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT------
T ss_pred HHHhcCCceecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC------
Confidence 999999999999999873 3344556667889999999999999986532 233466899999986432
Q ss_pred EEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHc
Q 038881 381 VVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLA 460 (794)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 460 (794)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCC
Q 038881 461 GAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPE 540 (794)
Q Consensus 461 Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 540 (794)
+.++.||++||.+
T Consensus 183 ---------------------------------------------------------------~~~~~~s~~g~~~---- 195 (274)
T d1r0re_ 183 ---------------------------------------------------------------SNRASFSSVGAEL---- 195 (274)
T ss_dssp ---------------------------------------------------------------SCBCTTCCCSTTE----
T ss_pred ---------------------------------------------------------------CCcccccCCCCCE----
Confidence 4678999999865
Q ss_pred cccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccC
Q 038881 541 ILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDN 620 (794)
Q Consensus 541 ~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~ 620 (794)
||+|||++|+++.+. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 196 ----di~APG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~- 257 (274)
T d1r0re_ 196 ----EVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG- 257 (274)
T ss_dssp ----EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-
T ss_pred ----EEEecCCCcccccCC-------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-
Confidence 999999999999876 48899999999999999999999999999999999999999998752
Q ss_pred CCcccccCCCCCCCCCcccccccccccccC
Q 038881 621 NKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 621 ~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
++..||+|+||+.+|++
T Consensus 258 -------------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 -------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -------------CHHHHTTCBCCHHHHTC
T ss_pred -------------CCCceEcCeecHHHhcC
Confidence 34679999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2e-48 Score=411.70 Aligned_cols=266 Identities=29% Similarity=0.417 Sum_probs=225.7
Q ss_pred cccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccccc
Q 038881 145 LGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY 224 (794)
Q Consensus 145 ~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~ 224 (794)
|+++.+. ++.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++
T Consensus 13 w~l~~i~---a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~--------------------------~~~~~~~~~~- 61 (279)
T d1thma_ 13 YGPQKIQ---APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN- 61 (279)
T ss_dssp CHHHHTT---HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT-
T ss_pred cChhhCC---HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC--------------------------eecccccccc-
Confidence 5666554 78999987 999999999999999999999753 4555666543
Q ss_pred ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHH
Q 038881 225 AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFD 304 (794)
Q Consensus 225 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~ 304 (794)
+..+.|..+|||||||+|++... ....+.||||+|+|+.+|++... + .+...+++++|+
T Consensus 62 ----------~~~~~d~~~HGT~vag~i~~~~~--------~~~~~~GvAp~a~l~~~~v~~~~--~-~~~~~~~~~ai~ 120 (279)
T d1thma_ 62 ----------DSTPQNGNGHGTHCAGIAAAVTN--------NSTGIAGTAPKASILAVRVLDNS--G-SGTWTAVANGIT 120 (279)
T ss_dssp ----------BSCCCCSSSHHHHHHHHHHCCCS--------SSSSCCCSSTTCEEEEEECSCTT--S-CCCHHHHHHHHH
T ss_pred ----------CcccccccccccccceeeeeccC--------CCccccccCCcceEEEEEEEecC--C-CCcHHHHHHHHH
Confidence 34567889999999999998752 23456899999999999999876 3 478899999999
Q ss_pred HhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEec
Q 038881 305 MAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVS 384 (794)
Q Consensus 305 ~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~ 384 (794)
++++.+++|+|+|||.. ........+...+.++|+++|+|+||+|..........+++|+|||++.+
T Consensus 121 ~~~~~~~~i~n~S~G~~---~~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~---------- 187 (279)
T d1thma_ 121 YAADQGAKVISLSLGGT---VGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN---------- 187 (279)
T ss_dssp HHHHTTCSEEEECCCBS---SCCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT----------
T ss_pred HHhhcCCceeccccCcc---ccchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC----------
Confidence 99999999999999987 33445667777899999999999999998887777788999999986432
Q ss_pred CCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceE
Q 038881 385 NNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVG 464 (794)
Q Consensus 385 ~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 464 (794)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccC
Q 038881 465 MVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKP 544 (794)
Q Consensus 465 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 544 (794)
+.++.||++|++.
T Consensus 188 -----------------------------------------------------------~~~~~~S~~G~~~-------- 200 (279)
T d1thma_ 188 -----------------------------------------------------------DNKSSFSTYGSWV-------- 200 (279)
T ss_dssp -----------------------------------------------------------SCBCTTCCCCTTC--------
T ss_pred -----------------------------------------------------------CCCccccCCCceE--------
Confidence 4678999999987
Q ss_pred ceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcc
Q 038881 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQ 624 (794)
Q Consensus 545 DI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~ 624 (794)
||+|||.+|+++.+. +.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.
T Consensus 201 di~Apg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~----- 260 (279)
T d1thma_ 201 DVAAPGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS----- 260 (279)
T ss_dssp CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT-----
T ss_pred EEeeeeeccccccCc-------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC-----
Confidence 999999999999877 4799999999999999999999999765 89999999999998763
Q ss_pred cccCCCCCCCCCcccccccccccccC
Q 038881 625 ILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 625 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
..+..||+|+||+.+||+
T Consensus 261 --------g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 261 --------GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp --------TBTTTBSSEECCHHHHHH
T ss_pred --------CCCCcceeeeEcHHHhhC
Confidence 235679999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.1e-48 Score=411.91 Aligned_cols=266 Identities=28% Similarity=0.418 Sum_probs=219.8
Q ss_pred ccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccc
Q 038881 146 GLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYA 225 (794)
Q Consensus 146 gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~ 225 (794)
+|+.+. ++.+|+++++|+||+|||||||||++||+|+.. ..++|....
T Consensus 7 ~l~~i~---a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~----------------------------~~~~~~~~~- 54 (281)
T d1to2e_ 7 GVSQIK---APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA----------------------------GGASMVPSE- 54 (281)
T ss_dssp HHHHTT---HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE----------------------------EEEECCTTC-
T ss_pred ChHHhC---cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc----------------------------CCccccCCC-
Confidence 454443 789999999999999999999999999999632 223333220
Q ss_pred cccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHH
Q 038881 226 AAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDM 305 (794)
Q Consensus 226 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~ 305 (794)
.....+..+|||||||||+|.. .+....||||+|+|+.+|+++.+ + .+...+++++|++
T Consensus 55 ---------~~~~~~~~~HGT~vAgiiag~~---------~~~~~~giAp~a~l~~~kv~~~~--~-~~~~~~~~~ai~~ 113 (281)
T d1to2e_ 55 ---------TNPFQDNNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGAD--G-SGQYSWIINGIEW 113 (281)
T ss_dssp ---------CCTTCCSSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTT--S-EECHHHHHHHHHH
T ss_pred ---------CCCCcCcCCCCceeecccccCC---------CCCCcceeecccEEEEEEEeCCC--C-CcCHHHHHHHHHH
Confidence 1123346799999999999874 22335899999999999999876 3 4678899999999
Q ss_pred hHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC----cCCCCCceEEeccccCCCCccceE
Q 038881 306 AIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST----VSNIAPWQITVGASTMDRDFPSYV 381 (794)
Q Consensus 306 a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~----~~~~ap~vitVgAs~~~~~~~~~~ 381 (794)
++..+++|+|+|||.. .....+..++..+.++|+++|+||||+|..... .+...+++|+|||++.+
T Consensus 114 a~~~~~~v~n~S~g~~---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------- 183 (281)
T d1to2e_ 114 AIANNMDVINMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS------- 183 (281)
T ss_dssp HHHTTCSEEEECEEBS---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-------
T ss_pred HHhccccccccccCCC---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC-------
Confidence 9999999999999986 345667788888999999999999999865332 34567899999986432
Q ss_pred EecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcC
Q 038881 382 VVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAG 461 (794)
Q Consensus 382 ~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~G 461 (794)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCc
Q 038881 462 AVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEI 541 (794)
Q Consensus 462 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 541 (794)
+.++.||++||.+
T Consensus 184 --------------------------------------------------------------~~~~~~S~~G~~~----- 196 (281)
T d1to2e_ 184 --------------------------------------------------------------NQRASFSSVGPEL----- 196 (281)
T ss_dssp --------------------------------------------------------------SCBCTTCCCSTTC-----
T ss_pred --------------------------------------------------------------CCCCcccCCCCCc-----
Confidence 4678999999987
Q ss_pred ccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCC
Q 038881 542 LKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNN 621 (794)
Q Consensus 542 ~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~ 621 (794)
|++|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.|++++||++|++||+++.
T Consensus 197 ---d~~apG~~i~s~~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-- 258 (281)
T d1to2e_ 197 ---DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-- 258 (281)
T ss_dssp ---CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--
T ss_pred ---cccCCCCCceeecCC-------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--
Confidence 999999999999876 47899999999999999999999999999999999999999998762
Q ss_pred CcccccCCCCCCCCCcccccccccccccCC
Q 038881 622 KGQILNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 622 g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
++..||+|+||+.+|++-
T Consensus 259 ------------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 ------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ------------CHHHHTTCBCCHHHHTSS
T ss_pred ------------CCCCcccCcccHHHHHhh
Confidence 245799999999999983
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=3e-48 Score=408.08 Aligned_cols=257 Identities=28% Similarity=0.413 Sum_probs=219.2
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
+..+|.++++|+||+|+||||||| +||+|... ..++|.++
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~----------------------------~~~~~~~~----------- 52 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR----------------------------GGASFVPG----------- 52 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE----------------------------EEEECSTT-----------
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc----------------------------ccccccCC-----------
Confidence 679999999999999999999998 89999532 23344432
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVL 314 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVI 314 (794)
...+.|.++|||||||||++.. ......|+||+|+|+.+|++... + .+....+.++++++..+++++|
T Consensus 53 ~~~~~d~~~HGT~vAgii~~~~---------~~~~~~giap~a~i~~~~v~~~~--~-~~~~~~~~~ai~~~~~~~~~~i 120 (269)
T d1gcia_ 53 EPSTQDGNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGAS--G-SGSVSSIAQGLEWAGNNGMHVA 120 (269)
T ss_dssp CCSCSCSSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTT--S-CBCHHHHHHHHHHHHHTTCSEE
T ss_pred CCCccccchhhheecccccccC---------CCccccccCCceEEEEEEEecCC--C-CccHHHHHHHHHHHHhcccccc
Confidence 2355678999999999999875 23445799999999999999877 3 4788899999999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeec
Q 038881 315 SVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSL 394 (794)
Q Consensus 315 N~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 394 (794)
|+|||... .......+...+.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 121 n~s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 177 (269)
T d1gcia_ 121 NLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------------------- 177 (269)
T ss_dssp EECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------------
T ss_pred cccccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC--------------------
Confidence 99999872 3344556777899999999999999998877777888999999986432
Q ss_pred CCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC
Q 038881 395 SSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG 474 (794)
Q Consensus 395 ~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~ 474 (794)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEE
Q 038881 475 NELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 475 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
+.++.||++||.. ||+|||.++.
T Consensus 178 -------------------------------------------------~~~~~~S~~G~~~--------di~Apg~~~~ 200 (269)
T d1gcia_ 178 -------------------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQ 200 (269)
T ss_dssp -------------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEE
T ss_pred -------------------------------------------------CCcccccCCCCCc--------eEEEeeecce
Confidence 4678999999987 9999999999
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCC
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKAT 634 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 634 (794)
++.+. ..|..++|||||||+|||++|||+|++|+|++++||++|++||+++. +
T Consensus 201 ~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------------~ 253 (269)
T d1gcia_ 201 STYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------S 253 (269)
T ss_dssp EEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------C
T ss_pred eccCC-------------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------C
Confidence 98876 48999999999999999999999999999999999999999998763 2
Q ss_pred CCcccccccccccccC
Q 038881 635 PFSYGAGHIQPNLAMD 650 (794)
Q Consensus 635 ~~~~G~G~vn~~~Al~ 650 (794)
+..||+|+||+++|++
T Consensus 254 ~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 254 TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHTTCBCCHHHHTC
T ss_pred CCCcccCeEcHHHhcC
Confidence 4569999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=1.5e-43 Score=379.64 Aligned_cols=296 Identities=25% Similarity=0.326 Sum_probs=222.1
Q ss_pred ccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc
Q 038881 144 FLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG 223 (794)
Q Consensus 144 ~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~ 223 (794)
.||+.++. +..+|..+++|+||+|+|||||||++||+|.++ +...++|...
T Consensus 7 ~wgl~~i~---~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~--------------------------~~~~~~~~~~ 57 (309)
T d2ixta1 7 PWGIKAIY---NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGA 57 (309)
T ss_dssp CHHHHHHH---TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSS
T ss_pred ChhHhhcC---ChhhhccCCCCCCeEEEEEccCCCCCChhHhcc--------------------------ccccccccCC
Confidence 35665543 678999999999999999999999999999753 3444555432
Q ss_pred cccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHH
Q 038881 224 YAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAF 303 (794)
Q Consensus 224 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai 303 (794)
. ........|..||||||||||+|.... ....+.||||+|+|+.++++... + .+..++++.++
T Consensus 58 ~-------~~~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~--~-~~~~~~~~~~~ 120 (309)
T d2ixta1 58 T-------TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS--G-SGYSDDIAAAI 120 (309)
T ss_dssp S-------SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT--S-CCCHHHHHHHH
T ss_pred C-------CCCCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCC--C-Ccccccccccc
Confidence 1 001234567889999999999987421 23345899999999999998876 3 46888999999
Q ss_pred HHhHhC-----CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcC--CCCCceEEeccccCCCC
Q 038881 304 DMAIHD-----GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVS--NIAPWQITVGASTMDRD 376 (794)
Q Consensus 304 ~~a~~~-----g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~--~~ap~vitVgAs~~~~~ 376 (794)
+++++. ...|+|+||+.. ........++..+.++|+++|+||||++....... ...+++++|++.+....
T Consensus 121 ~~a~~~~~~~~~~~v~~~s~~~~---~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~ 197 (309)
T d2ixta1 121 RHAADQATATGTKTIISMSLGSS---ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ 197 (309)
T ss_dssp HHHHHHHHHHTCCEEEEECCCBS---SCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccc---ccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccc
Confidence 998875 447999999986 23445566677889999999999999987655433 35678888887532110
Q ss_pred ccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHH
Q 038881 377 FPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQ 456 (794)
Q Consensus 377 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 456 (794)
....
T Consensus 198 ~~~~---------------------------------------------------------------------------- 201 (309)
T d2ixta1 198 NGTY---------------------------------------------------------------------------- 201 (309)
T ss_dssp TTEE----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCC
Q 038881 457 ALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSS 536 (794)
Q Consensus 457 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 536 (794)
..........++++|+..
T Consensus 202 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 219 (309)
T d2ixta1 202 --------------------------------------------------------------RVADYSSRGYISTAGDYV 219 (309)
T ss_dssp --------------------------------------------------------------EECTTSCCCCTTTTTSSS
T ss_pred --------------------------------------------------------------cccccccccccccccccc
Confidence 000012445567777765
Q ss_pred CCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 537 VAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 537 ~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
....||||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 220 --~~~~~vdi~apG~~~~s~~~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~ 284 (309)
T d2ixta1 220 --IQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAK 284 (309)
T ss_dssp --CCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred --cCCCcceeecCCCceeeecCC-------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCc
Confidence 667899999999999999876 48899999999999999999999999999999999999999999
Q ss_pred cccCCCcccccCCCCCCCCCccccccccc
Q 038881 617 IQDNNKGQILNASSYKATPFSYGAGHIQP 645 (794)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 645 (794)
+++..+.. ......++.+|+|++|+
T Consensus 285 ~~~~~~~~----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 285 SVDIKGGY----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp TSCCCBST----TCCSSSBTTTBTCBCCC
T ss_pred cCCCCCCc----CCccCCCcccCCCEecC
Confidence 87644321 12345677889999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=3.8e-43 Score=370.97 Aligned_cols=255 Identities=27% Similarity=0.358 Sum_probs=202.3
Q ss_pred ccccccCCCcc--ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecc
Q 038881 144 FLGLERNGRVE--SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFN 221 (794)
Q Consensus 144 ~~gl~~~~~~~--~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~ 221 (794)
.|||+++.+.. ...+|....+|+||+|||||||||++||+|.++ +...+.+
T Consensus 7 ~wgl~~i~~~~~~~~~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~--------------------------~~~~~~~- 59 (279)
T d2pwaa1 7 PWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTY- 59 (279)
T ss_dssp CHHHHHHTCSSTTCCCEECCTTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEES-
T ss_pred CCchhhhCCCCcCCCcceecCCCCCCeEEEEECcCCCCCChhhcCC--------------------------ceeccCC-
Confidence 35666554332 234444566999999999999999999999753 1111111
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH
Q 038881 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
+..+.|.+||||||||||+|.. .|+||+|+|+.+|++.... ....+.+..
T Consensus 60 -------------~~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~---~~~~~~~~~ 109 (279)
T d2pwaa1 60 -------------YYSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG---SGQYSTIIA 109 (279)
T ss_dssp -------------SSCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHH
T ss_pred -------------CCCcccccCccccccccccccc--------------cccCCCccccceeeecCCc---ccccccccc
Confidence 1245578899999999999864 6899999999999988763 467888999
Q ss_pred HHHHhHhC-------CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cCCCCCceEEeccccC
Q 038881 302 AFDMAIHD-------GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST-VSNIAPWQITVGASTM 373 (794)
Q Consensus 302 ai~~a~~~-------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~ 373 (794)
+++++... +++|+|+|||.. ..+.+..++.++.++|+++|+||||++..... .+...|++|+|||++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~i~n~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~ 185 (279)
T d2pwaa1 110 GMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR 185 (279)
T ss_dssp HHHHHHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT
T ss_pred hhheecccccccccccccceeccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee
Confidence 99998763 456999999986 44567778888999999999999999876544 3456789999998643
Q ss_pred CCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhH
Q 038881 374 DRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDK 453 (794)
Q Consensus 374 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 453 (794)
+
T Consensus 186 ~------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 186 Y------------------------------------------------------------------------------- 186 (279)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCC
Q 038881 454 GQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKG 533 (794)
Q Consensus 454 ~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 533 (794)
+.++.||++|
T Consensus 187 ----------------------------------------------------------------------g~~~~~S~~G 196 (279)
T d2pwaa1 187 ----------------------------------------------------------------------DRRSSFSNYG 196 (279)
T ss_dssp ----------------------------------------------------------------------SBBCTTCCBS
T ss_pred ----------------------------------------------------------------------CCCccccCCC
Confidence 4778999999
Q ss_pred CCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 038881 534 PSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMT 613 (794)
Q Consensus 534 p~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~ 613 (794)
|.. ||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|.++++++|. |++
T Consensus 197 ~~~--------dv~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ 254 (279)
T d2pwaa1 197 SVL--------DIFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IAD 254 (279)
T ss_dssp TTC--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHH
T ss_pred Ccc--------ccccccccccccccC-------------CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHH
Confidence 987 999999999999876 4899999999999999999999999999999888775 677
Q ss_pred cCccccCCCcccccCCCCCCCCCccccccccc
Q 038881 614 TASIQDNNKGQILNASSYKATPFSYGAGHIQP 645 (794)
Q Consensus 614 TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 645 (794)
||++. .....|+|++|+
T Consensus 255 ta~~~---------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 255 TANKG---------------DLSNIPFGTVNL 271 (279)
T ss_dssp HSEES---------------CCBSCCTTSCCE
T ss_pred hCcCC---------------CCCCCCCCChhh
Confidence 88653 234578999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=3.4e-41 Score=362.53 Aligned_cols=300 Identities=24% Similarity=0.295 Sum_probs=221.7
Q ss_pred ccccccc-cCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 155 SNSIWKK-ARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 155 ~~~~~~~-g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
++.+|.. |++|+||+|||||||||++||+|.... ....++...+.+..
T Consensus 10 ~~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~--------------------~~~~~~~~~~~~~~----------- 58 (318)
T d1wmda2 10 ADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE--------------------AFRGKITALYALGR----------- 58 (318)
T ss_dssp HHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT--------------------TTTTCEEEEEETTT-----------
T ss_pred chhHHHccCccccCeEEEEEcCCcCCCCcccccCc--------------------ccCCcEEeecCCCC-----------
Confidence 3477875 999999999999999999999996430 11122333333221
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceE
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dV 313 (794)
.....|..||||||||||+|+. ....||||+|+|+.+|+++..... ......+..+++++...+++|
T Consensus 59 -~~~~~d~~gHGT~vAgiiag~~-----------~~~~GvAp~a~l~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 125 (318)
T d1wmda2 59 -TNNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTLFSQAYSAGARI 125 (318)
T ss_dssp -TTCCCCSSSHHHHHHHHHHCCS-----------SSSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHHHHHHHHTTCSE
T ss_pred -CCCCCCCCCCCccceeeccccc-----------cccchhhhcccceeeeeeeecccc-cccchhhHHHHHHHHhcCCce
Confidence 2345678999999999999864 123799999999999999876311 234566888999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCC--CCCceEEeccccCCCCccceEEecCCeEEee
Q 038881 314 LSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN--IAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 314 IN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
+|+|||.............+...+.++++++|+|+||.|........ ..++++++.+........
T Consensus 126 ~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------- 192 (318)
T d1wmda2 126 HTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF------------- 192 (318)
T ss_dssp EEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-------------
T ss_pred eecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-------------
Confidence 99999988544455556666667889999999999999977665543 456777777643221000
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
+
T Consensus 193 ----------------------------------~--------------------------------------------- 193 (318)
T d1wmda2 193 ----------------------------------G--------------------------------------------- 193 (318)
T ss_dssp ----------------------------------C---------------------------------------------
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCc
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGV 551 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 551 (794)
........+..||++||.. ....|||+.|||.
T Consensus 194 ----------------------------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~ 225 (318)
T d1wmda2 194 ----------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGT 225 (318)
T ss_dssp ----------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECS
T ss_pred ----------------------------------------------cccccccccccccccCCCc--CCCcccceeecCc
Confidence 0000124677899999987 7789999999999
Q ss_pred eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC-----CCCCHHHHHHHHHhcCccccCCCcccc
Q 038881 552 TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH-----PEWSPAAIKSAIMTTASIQDNNKGQIL 626 (794)
Q Consensus 552 ~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p~lsp~~ik~~L~~TA~~~~~~g~~~~ 626 (794)
+|+++.......... .......|..++|||||||+|||++|||+|++ +.+++.+||++|++||+++..
T Consensus 226 ~i~~~~~~~~~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~------ 298 (318)
T d1wmda2 226 FILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL------ 298 (318)
T ss_dssp SEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS------
T ss_pred eEEeccccccccCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC------
Confidence 999987664322111 11122467889999999999999999999974 467899999999999987633
Q ss_pred cCCCCCCCCCcccccccccccccC
Q 038881 627 NASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 627 ~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
..++..||||+||+.+||+
T Consensus 299 -----~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 299 -----GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -----CSSCTTTTTCBCCHHHHHT
T ss_pred -----CCCCCCeeeceecHHHHhC
Confidence 3457789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-39 Score=348.36 Aligned_cols=295 Identities=15% Similarity=0.175 Sum_probs=197.6
Q ss_pred ccccccCCC--ccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecc
Q 038881 144 FLGLERNGR--VESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFN 221 (794)
Q Consensus 144 ~~gl~~~~~--~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~ 221 (794)
+|.++++.. +++..+|..+++|+||+|||||||||++||+|.++ +.....|.
T Consensus 13 qw~l~~~~~~~in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~--------------------------~~~~~~~~ 66 (334)
T d1p8ja2 13 QWYLSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGN--------------------------YDPGASFD 66 (334)
T ss_dssp CTTTSCTTSCSCCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGG--------------------------BCGGGCEE
T ss_pred cCCCCCCcccCCCHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhc--------------------------cccCCCcc
Confidence 345554332 34678999999999999999999999999999753 11111111
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH
Q 038881 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA 301 (794)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ 301 (794)
... ..+.........|..+|||||||||++...+ +....|+||+++++.+|+++. .....+.
T Consensus 67 ~~~---~~~~~~~~~~~~~~~gHGT~vAgiia~~~~n--------~~~~~g~a~~a~~~~~~~~~~-------~~~~~~~ 128 (334)
T d1p8ja2 67 VND---QDPDPQPRYTQMNDNRHGTRCAGEVAAVANN--------GVCGVGVAYNARIGGVRMLDG-------EVTDAVE 128 (334)
T ss_dssp TTT---TBSCCCCCCCTTCTTCHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECSSS-------CCCHHHH
T ss_pred ccC---CCCccccccccccCccchhhhhhhhhhcccc--------ccccccccccccccchhhccc-------cccchHH
Confidence 100 0011111234457899999999999987522 223479999999999999753 3345667
Q ss_pred HHHHhHh-CCceEEEEccCCCCC-CCCCCH--------HHHHHHHHHhCCcEEEEecCCCCCCCCCcCC----CCCceEE
Q 038881 302 AFDMAIH-DGVDVLSVSLGGGPS-KFFNDS--------TAIGSFHAVKHGMVVICSAGNSGPTDSTVSN----IAPWQIT 367 (794)
Q Consensus 302 ai~~a~~-~g~dVIN~SlG~~~~-~~~~~~--------~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~----~ap~vit 367 (794)
++.++++ .+++++|+|||.... .....+ +..+...+..+|+++|+||||++........ ..+.+++
T Consensus 129 ~~~~~~~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~ 208 (334)
T d1p8ja2 129 ARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLS 208 (334)
T ss_dssp HHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEE
T ss_pred HHHHHhhhcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccc
Confidence 7777765 689999999998631 111111 2233345667899999999998755433221 2345566
Q ss_pred eccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCC
Q 038881 368 VGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGD 447 (794)
Q Consensus 368 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 447 (794)
|++++..
T Consensus 209 v~~~~~~------------------------------------------------------------------------- 215 (334)
T d1p8ja2 209 ISSATQF------------------------------------------------------------------------- 215 (334)
T ss_dssp EEEECTT-------------------------------------------------------------------------
T ss_pred ccccccC-------------------------------------------------------------------------
Confidence 6654322
Q ss_pred chhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccc
Q 038881 448 NARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMA 527 (794)
Q Consensus 448 ~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 527 (794)
+..+
T Consensus 216 ----------------------------------------------------------------------------g~~~ 219 (334)
T d1p8ja2 216 ----------------------------------------------------------------------------GNVP 219 (334)
T ss_dssp ----------------------------------------------------------------------------SCCC
T ss_pred ----------------------------------------------------------------------------Ccee
Confidence 3445
Q ss_pred cccCCCCCCCCCCcccCceEeCCc-----eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCC
Q 038881 528 AFSSKGPSSVAPEILKPDITAPGV-----TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602 (794)
Q Consensus 528 ~fSS~Gp~~~~~~~~KPDI~APG~-----~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l 602 (794)
.||++|+... .+..+||. .+.+... ...|..++|||||||+|||++|||+|++|+|
T Consensus 220 ~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~l 280 (334)
T d1p8ja2 220 WYSEACSSTL------ATTYSSGNQNEKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNL 280 (334)
T ss_dssp TTCCBCTTCC------EEEECCCSTTSCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred eecccCCccc------cccccccccccccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCC
Confidence 5666665441 13333332 2332222 1478899999999999999999999999999
Q ss_pred CHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccC
Q 038881 603 SPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 603 sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
++.|||++|++||.+.......+.........+..||+|+||+++||+
T Consensus 281 t~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 281 TWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp CHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHH
T ss_pred CHHHHHHHHHHhCcccCCCCccccccCCCcccCCCCcceEeCHHHHHH
Confidence 999999999999998765443333222233345679999999999997
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-38 Score=346.20 Aligned_cols=287 Identities=17% Similarity=0.186 Sum_probs=204.3
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
++..+|..+++|+||+|||||||||++||+|.++-. ..+.++|.+.. .
T Consensus 34 n~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~------------------------~~~~~~~~~~~--------~ 81 (339)
T d2id4a2 34 NVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC------------------------AEGSWDFNDNT--------N 81 (339)
T ss_dssp CCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC------------------------GGGCEETTTTB--------S
T ss_pred CHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc------------------------cccccccccCC--------C
Confidence 467999999999999999999999999999976410 11223443321 0
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceE
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dV 313 (794)
......+..+|||||||+|++... .+....||||+|+|+.++++... ....++..++.+++.. .+|
T Consensus 82 ~~~~~~~~~~HGT~vag~iaa~~~--------~~~~~~Gvap~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~v 147 (339)
T d2id4a2 82 LPKPRLSDDYHGTRCAGEIAAKKG--------NNFCGVGVGYNAKISGIRILSGD-----ITTEDEAASLIYGLDV-NDI 147 (339)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSS--------SSSSCCCTTTTSEEEEEECTTSC-----CCHHHHHHHTTTTTTT-CSE
T ss_pred ccCCCcccccccceeeeccccccc--------ccccccccccccccceEEEeecc-----ccchHHHHHHHHHHhh-CCE
Confidence 122445678999999999998742 22335899999999999997643 6778888888887765 489
Q ss_pred EEEccCCCCCC-CC---CCH-----HHHHHHHHHhCCcEEEEecCCCCCCCCCcC--C--CCCceEEeccccCCCCccce
Q 038881 314 LSVSLGGGPSK-FF---NDS-----TAIGSFHAVKHGMVVICSAGNSGPTDSTVS--N--IAPWQITVGASTMDRDFPSY 380 (794)
Q Consensus 314 IN~SlG~~~~~-~~---~~~-----~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~--~--~ap~vitVgAs~~~~~~~~~ 380 (794)
+|+|||..... .. ... ...+...+..+|+++|+||||++....... . ..+.+++|++++.
T Consensus 148 ~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 220 (339)
T d2id4a2 148 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH------- 220 (339)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-------
T ss_pred EeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccc-------
Confidence 99999976211 11 111 223334566799999999999875433221 1 2234444444321
Q ss_pred EEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHc
Q 038881 381 VVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLA 460 (794)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 460 (794)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCC
Q 038881 461 GAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPE 540 (794)
Q Consensus 461 Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 540 (794)
.+..+.||++|+..
T Consensus 221 --------------------------------------------------------------~g~~~~~s~~~~~~---- 234 (339)
T d2id4a2 221 --------------------------------------------------------------KDLHPPYSEGCSAV---- 234 (339)
T ss_dssp --------------------------------------------------------------TSCCCTTCCCCTTE----
T ss_pred --------------------------------------------------------------cccccccccccCcc----
Confidence 23556677777643
Q ss_pred cccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccC
Q 038881 541 ILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDN 620 (794)
Q Consensus 541 ~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~ 620 (794)
...++..+||..|.++.... ..|..++|||||||||||++|||+|++|+|++.|||.+|++||.+++.
T Consensus 235 ~~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~ 302 (339)
T d2id4a2 235 MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEK 302 (339)
T ss_dssp EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTT
T ss_pred ceeeeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCC
Confidence 34557888999998776542 368899999999999999999999999999999999999999998754
Q ss_pred CCccc-ccCCCCCCCCCcccccccccccccCC
Q 038881 621 NKGQI-LNASSYKATPFSYGAGHIQPNLAMDP 651 (794)
Q Consensus 621 ~g~~~-~~~~~~~~~~~~~G~G~vn~~~Al~~ 651 (794)
....- .+.......+..||||+||+.+||+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 303 NADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp CGGGCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred CCCccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 43211 12222344566799999999999974
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=1.1e-31 Score=292.10 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=108.9
Q ss_pred cccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCC
Q 038881 160 KKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPR 239 (794)
Q Consensus 160 ~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 239 (794)
.++++|+||+|||||||||++||+|.+. |. .+... .....+.
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~---------------------~~~~~---------~~~~~~~ 59 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FA---------------------SLGVS---------APQVVSV 59 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HH---------------------HTTCC---------CCCEEEE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hh---------------------hcCCC---------CCCCcee
Confidence 4689999999999999999999999631 00 00000 0011234
Q ss_pred CCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH---hCCceEEEE
Q 038881 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI---HDGVDVLSV 316 (794)
Q Consensus 240 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~---~~g~dVIN~ 316 (794)
|.++|+|||+|++++...... .....+.||||+|+|+.+|++... ..++.++++++ +++++|||+
T Consensus 60 ~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~Vin~ 127 (357)
T d1t1ga_ 60 SVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD--------AGFLNAITTAVHDPTHKPSIVSI 127 (357)
T ss_dssp ESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH--------HHHHHHHHHHHHCTTTCCSEEEE
T ss_pred CCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccCC--------CchHHHHHHHHHhhhcCCeEEec
Confidence 567899999999886532111 112235899999999999996533 33445555544 569999999
Q ss_pred ccCCCCCCC---CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------cCCCCCceEEecccc
Q 038881 317 SLGGGPSKF---FNDSTAIGSFHAVKHGMVVICSAGNSGPTDST--------VSNIAPWQITVGAST 372 (794)
Q Consensus 317 SlG~~~~~~---~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------~~~~ap~vitVgAs~ 372 (794)
|||...... ....+......+..+|+++|+|+||+|..... .....+++++|++..
T Consensus 128 S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 128 SWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp CCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred ccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 999863211 12335556667888999999999999854322 123457888888753
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=9.9e-29 Score=270.45 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=115.1
Q ss_pred cCCCCceEEEEecCCCCCC-CCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCC
Q 038881 162 ARYGEDTIIGNLDTGVWPE-SKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRD 240 (794)
Q Consensus 162 g~~G~GV~VaVIDTGId~~-Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d 240 (794)
..+|+||+|||||+|.++. |+||.. + .....+...... ......+
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~---------f------------~~~~~~~~~~~~-------------~~~~~~~ 66 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQ---------F------------TSANGLASVNTQ-------------TIQTGSS 66 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHH---------H------------HHHTTCCCCCEE-------------EEECSCT
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHH---------H------------HHhcCCCCCCCC-------------eecCCCC
Confidence 4589999999999998764 666631 0 000000000000 0112335
Q ss_pred CCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-CCceEEEEccC
Q 038881 241 KDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVDVLSVSLG 319 (794)
Q Consensus 241 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-~g~dVIN~SlG 319 (794)
..+||||+++++.+.. ....+.||||+|+|+.++++.+. + .....+++++|+++++ .+++|||+|||
T Consensus 67 ~~~~~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~--~-~~~~~~~~~a~~~a~~~~~~~Vis~S~g 134 (369)
T d1ga6a_ 67 NGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQ--S-ASGNTGLTQAFNQAVSDNVAKVINVSLG 134 (369)
T ss_dssp TSCCCBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECT--T-SSTTHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred CCCCCCCCCcceeecc---------ccccccccccCceEEEEEEeCCC--C-CcchHHHHHHHHHHHHcCCCceeecccc
Confidence 6789999999988653 12235899999999999999876 3 4678899999999986 57999999999
Q ss_pred CCC----CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC-------------cCCCCCceEEecccc
Q 038881 320 GGP----SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST-------------VSNIAPWQITVGAST 372 (794)
Q Consensus 320 ~~~----~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-------------~~~~ap~vitVgAs~ 372 (794)
... .....+.+..++.++.++|++||+||||+|...+. .+...+++++|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 135 WCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp EEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 862 12233456667778889999999999999864321 223568899999854
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=4.3e-09 Score=83.94 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred CccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEecceeeeEEEEeCHHHHHHHHcCCCeEEEE
Q 038881 50 QTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVSVF 129 (794)
Q Consensus 50 ~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~ 129 (794)
.++|||.||++.+. .....+..++.+. +.++.+.|+ .||||+++|++++++.|+++|+|.+||
T Consensus 1 e~~YIV~fK~~~~~---------~~~~~~~~~v~~~-------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE 63 (71)
T d1scjb_ 1 EKKYIVGFKQTMSA---------MSSAKKKDVISQK-------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVE 63 (71)
T ss_dssp CEEEEEEECSSSSC---------CSHHHHHHHHHTT-------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEE
T ss_pred CCcEEEEECCCCCh---------HHHHHHHHHHHHc-------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEe
Confidence 36899999998654 3334555555432 467999998 799999999999999999999999999
Q ss_pred ecceecc
Q 038881 130 LNQGRKL 136 (794)
Q Consensus 130 ~~~~~~~ 136 (794)
+|+.++.
T Consensus 64 ~D~v~~a 70 (71)
T d1scjb_ 64 EDHIAHE 70 (71)
T ss_dssp ECCEEEE
T ss_pred CCcEEEc
Confidence 9998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.76 E-value=7.6e-09 Score=82.75 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=53.0
Q ss_pred CccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCcceEEEec-ceeeeEEEEeCHHHHHHHHcCCC--eE
Q 038881 50 QTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPEDAIFYSYT-RHINGFAAKLDDAVAAEIAKHPK--VV 126 (794)
Q Consensus 50 ~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~-~~~ng~s~~~~~~~i~~L~~~p~--V~ 126 (794)
.|+|||+||++.+. ...+.+..++...- ..+.+.|. +.|+||+++++++.++.|+++|. |.
T Consensus 2 aG~YIVvlK~~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~ 65 (72)
T d1v5ib1 2 AGKFIVIFKNDVSE---------DKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLID 65 (72)
T ss_dssp CEEEEEEECTTCCH---------HHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred CccEEEEECCCCCH---------HHHHHHHHHHHhcC-------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCc
Confidence 48999999997643 44456666665542 34667777 68999999999999999998655 99
Q ss_pred EEEecce
Q 038881 127 SVFLNQG 133 (794)
Q Consensus 127 ~v~~~~~ 133 (794)
+||+|+.
T Consensus 66 yVE~D~V 72 (72)
T d1v5ib1 66 SIEEDHV 72 (72)
T ss_dssp EEEECCE
T ss_pred eECCCCC
Confidence 9999863
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.00086 Score=62.69 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc------------------cccC---------------
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN------------------ELLA--------------- 479 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~------------------~~~~--------------- 479 (794)
..+++|||+|+++|.+.+.+|..+|+.+||.|+|+|.+..... .+.+
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 3578999999999999999999999999999999998643210 0000
Q ss_pred -CCCcccEEEEeccchHHHHHHHh
Q 038881 480 -DPHLLPASHINFTDGADLFRDVN 502 (794)
Q Consensus 480 -~~~~~p~~~i~~~~g~~l~~~~~ 502 (794)
..-.||+.-|+..+++.|+..+.
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcCCeeeCCHHHHHHHHHHcC
Confidence 01348999999999999999774
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.23 E-value=0.034 Score=46.31 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=62.1
Q ss_pred CCCCCeEEeecCCceEEEEEEEEecCC-C-ceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeE
Q 038881 694 NFNYPSITVPKLSGSIIVSRTVRNVGS-P-GTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYV 771 (794)
Q Consensus 694 ~~n~ps~~~~~~~~~~~~~~tv~n~~~-~-~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~ 771 (794)
.+..|++.+.- +...+++++|+|.++ . ..-++.++.|.|=++. +..+.+ ++|++++++++|++... ...+.|.
T Consensus 5 p~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~-a~~G~Y~ 79 (103)
T d1w8oa1 5 PFTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAG-TTPGRYR 79 (103)
T ss_dssp CEECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTT-CCCEEEE
T ss_pred cccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCC-CCCceEE
Confidence 35567777654 478999999999998 4 4467788899987665 445556 89999999999999763 4556664
Q ss_pred EEEEEEEeCCccEEEeEEEE
Q 038881 772 FGDLVWADDKQHQVRSPIVV 791 (794)
Q Consensus 772 ~G~~~~~~~~~~~v~~P~~~ 791 (794)
.. +..+. ++......+-+
T Consensus 80 i~-~~a~~-~~~~~s~t~tv 97 (103)
T d1w8oa1 80 VG-ATLRT-SAGNASTTFTV 97 (103)
T ss_dssp EE-EEEEE-TTEEEEEEEEE
T ss_pred EE-EEEEe-CCcceEEEEEE
Confidence 44 44555 33333334433
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.007 Score=58.14 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=36.5
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
..+++|||+|+++|.+.+.+|..+|+..||+|+|+|++.
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 458999999999999999999999999999999999974
|