Citrus Sinensis ID: 038885

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
MWVTAIALLLAFVSADNTPKIERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW
cHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEccccccccccHHHHHHHHHccHHHcccccEEcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHcccccEEEcccccccHHHHHHcccEEEEcccccccccHHHHHHHcccEEEEEEcccccccccccccccEEEEEccccHHcHHHHHHcccHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccccccEEccccEEcccccccccccccc
cHHHHHHHHHHHHHcccccccccEccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEccHcHcEEEEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccHHHHHcccHHHccccccHccccccccccccccEEcccccccccccHHccccccccccEEEEEccccccccccccccEEEEHHHHHHHccccccccEcccccccccHHHHHHccEEEEcccccccccHHHHHHHHHccccEEEEccccccccccccHccEEEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEccccEEEEcccccccccccc
MWVTAIALLLAFVsadntpkierisgsagdvleddpvgKLKVYVYELpskynkklllkdprcLTHMFAAEIFMHRFllsspvrtlnpeeadwfytpiyptcdltptglplpfksprmMRSAIQLIssnwpywnrtegadhffvvphdfgacfHYQEEKAIERGILPLLQRATLVQTFGqrnhvclnegsitippyappqkmqahqippdtprsIFVYFRglfydvnndpeggyyarGARAAVWEnfknnplfdistdhpttyYEDMQRAIFClcplgwapwsprlVEAVVFGCIpviiaddivlpfadaipweeigmfvaeedvpkldtiltsippevILRKQRllanpsmkramlfpqpaqpgdaFHQILNGLArklphdkstylkpggkflnwtsgpvgdlkpw
MWVTAIALLLAFVSADNTPKierisgsagdvleddpvGKLKVYVYELpskynkklllkdPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTIltsippeviLRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKStylkpggkflnwtsgpvgdlkpw
MWVTAIALLLAFVSADNTPKIERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEggyyargaraaVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW
*WVTAIALLLAFVSADNTPKIERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPY****************RSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLA******************AFHQILNGLARKLPHDKSTYLKPGGKFLNWT**********
MWVTAIALLLAFVSA********************PVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW
MWVTAIALLLAFVSADNTPKIERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW
MWVTAIALLLAFVSAD****************EDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDL***
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SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWVTAIALLLAFVSADNTPKIERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query406 2.2.26 [Sep-21-2011]
Q9FZJ1412 Probable beta-1,4-xylosyl yes no 0.995 0.980 0.921 0.0
Q940Q8415 Probable beta-1,4-xylosyl no no 0.948 0.927 0.901 0.0
Q8S1X7417 Probable glucuronosyltran yes no 0.953 0.928 0.891 0.0
Q8S1X8415 Probable glucuronosyltran no no 0.948 0.927 0.883 0.0
Q7XLG3420 Probable glucuronosyltran no no 0.948 0.916 0.872 0.0
Q6H4N0434 Probable glucuronosyltran no no 0.948 0.887 0.867 0.0
Q8S1X9422 Probable glucuronosyltran no no 0.970 0.933 0.774 0.0
Q33AH8417 Probable glucuronosyltran no no 0.967 0.942 0.761 0.0
Q6NMM8469 Probable glucuronoxylan g no no 0.940 0.814 0.404 4e-85
Q9ZUV3448 Probable glucuronoxylan g no no 0.852 0.772 0.422 2e-81
>sp|Q9FZJ1|IRX10_ARATH Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana GN=IRX10 PE=2 SV=1 Back     alignment and function desciption
 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/406 (92%), Positives = 385/406 (94%), Gaps = 2/406 (0%)

Query: 3   VTAIALLLAFV--SADNTPKIERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLKDP 60
           ++AI L L F   SA    + ERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLL KDP
Sbjct: 7   LSAILLFLFFSASSAKQNVRTERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLQKDP 66

Query: 61  RCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRS 120
           RCLTHMFAAEIFMHRFLLSSPVRT NP+EADWFYTPIYPTCDLTPTGLPLPFKSPRMMRS
Sbjct: 67  RCLTHMFAAEIFMHRFLLSSPVRTRNPDEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRS 126

Query: 121 AIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQR 180
           +IQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQR
Sbjct: 127 SIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQR 186

Query: 181 NHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARA 240
           NHVCL+EGSITIPP+APPQKMQAH IPPD PRSIFVYFRGLFYDVNNDPEGGYYARGARA
Sbjct: 187 NHVCLDEGSITIPPFAPPQKMQAHFIPPDIPRSIFVYFRGLFYDVNNDPEGGYYARGARA 246

Query: 241 AVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD 300
           AVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD
Sbjct: 247 AVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD 306

Query: 301 DIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQP 360
           DIVLPFADAIPWEEIG+FVAE+DVP+LDTILTSIP EVILRKQRLLANPSMKRAMLFPQP
Sbjct: 307 DIVLPFADAIPWEEIGVFVAEKDVPELDTILTSIPTEVILRKQRLLANPSMKRAMLFPQP 366

Query: 361 AQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW 406
           AQPGDAFHQILNGLARKLPHDKS YLK G K LNWT+GPV DLKPW
Sbjct: 367 AQPGDAFHQILNGLARKLPHDKSIYLKTGEKALNWTAGPVADLKPW 412
Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: -
>sp|Q940Q8|IX10L_ARATH Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1 Back     alignment and function description
>sp|Q8S1X7|GT15_ORYSJ Probable glucuronosyltransferase Os01g0926700 OS=Oryza sativa subsp. japonica GN=Os01g0926700 PE=2 SV=1 Back     alignment and function description
>sp|Q8S1X8|GT14_ORYSJ Probable glucuronosyltransferase Os01g0926600 OS=Oryza sativa subsp. japonica GN=Os01g0926600 PE=2 SV=1 Back     alignment and function description
>sp|Q7XLG3|GT42_ORYSJ Probable glucuronosyltransferase Os04g0398600 OS=Oryza sativa subsp. japonica GN=Os04g0398600 PE=2 SV=2 Back     alignment and function description
>sp|Q6H4N0|GT21_ORYSJ Probable glucuronosyltransferase Os02g0520750 OS=Oryza sativa subsp. japonica GN=Os02g0520750 PE=2 SV=1 Back     alignment and function description
>sp|Q8S1X9|GT13_ORYSJ Probable glucuronosyltransferase Os01g0926400 OS=Oryza sativa subsp. japonica GN=Os01g0926400 PE=2 SV=1 Back     alignment and function description
>sp|Q33AH8|GT101_ORYSJ Probable glucuronosyltransferase GUT1 OS=Oryza sativa subsp. japonica GN=GUT1 PE=2 SV=2 Back     alignment and function description
>sp|Q6NMM8|F8H_ARATH Probable glucuronoxylan glucuronosyltransferase F8H OS=Arabidopsis thaliana GN=F8H PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUV3|IRX7_ARATH Probable glucuronoxylan glucuronosyltransferase IRX7 OS=Arabidopsis thaliana GN=IRX7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
224053575412 predicted protein [Populus trichocarpa] 1.0 0.985 0.914 0.0
60657598412 secondary cell wall-related glycosyltran 1.0 0.985 0.906 0.0
15223522412 putative glycosyltransferase [Arabidopsi 0.995 0.980 0.921 0.0
224075447413 predicted protein [Populus trichocarpa] 0.967 0.951 0.938 0.0
297851174412 hypothetical protein ARALYDRAFT_472948 [ 0.995 0.980 0.918 0.0
359473830412 PREDICTED: probable beta-1,4-xylosyltran 1.0 0.985 0.894 0.0
255540029417 catalytic, putative [Ricinus communis] g 0.985 0.959 0.893 0.0
449484890417 PREDICTED: probable beta-1,4-xylosyltran 1.0 0.973 0.886 0.0
225456511416 PREDICTED: probable beta-1,4-xylosyltran 0.997 0.973 0.883 0.0
356508876416 PREDICTED: probable beta-1,4-xylosyltran 1.0 0.975 0.879 0.0
>gi|224053575|ref|XP_002297880.1| predicted protein [Populus trichocarpa] gi|222845138|gb|EEE82685.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/408 (91%), Positives = 387/408 (94%), Gaps = 2/408 (0%)

Query: 1   MWVTAIALLLAFVSADNTPKI--ERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLK 58
           +WV A+ L+  FV      ++  ERISGSAGDVL+DDPVG+LKVYVYELPSKYNKKLL K
Sbjct: 5   LWVFAVVLVFGFVDGKEIERLRTERISGSAGDVLDDDPVGRLKVYVYELPSKYNKKLLQK 64

Query: 59  DPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMM 118
           DPRCLTHMFAAEIFMHRFLLSSPVRTLNP+EADWFY+PIYPTCDLTP GLPLPFKSPRMM
Sbjct: 65  DPRCLTHMFAAEIFMHRFLLSSPVRTLNPDEADWFYSPIYPTCDLTPMGLPLPFKSPRMM 124

Query: 119 RSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFG 178
           RSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQR+TLVQTFG
Sbjct: 125 RSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRSTLVQTFG 184

Query: 179 QRNHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGA 238
           QRNHVCLNEGSITIPP+APPQKMQAHQIPPD PRSIFVYFRGLFYDVNNDPEGGYYARGA
Sbjct: 185 QRNHVCLNEGSITIPPFAPPQKMQAHQIPPDIPRSIFVYFRGLFYDVNNDPEGGYYARGA 244

Query: 239 RAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVII 298
           RAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVII
Sbjct: 245 RAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVII 304

Query: 299 ADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFP 358
           ADDIVLPFADAIPWEEIG+FVAEEDVP LDTILTSIPPEVILRKQRLLANPSMKRAMLFP
Sbjct: 305 ADDIVLPFADAIPWEEIGVFVAEEDVPNLDTILTSIPPEVILRKQRLLANPSMKRAMLFP 364

Query: 359 QPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW 406
           QPAQPGDAFHQILNGLARKLPHD+S YLK G   LNWT+GPVGDLKPW
Sbjct: 365 QPAQPGDAFHQILNGLARKLPHDRSVYLKSGQNILNWTAGPVGDLKPW 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|60657598|gb|AAX33320.1| secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|15223522|ref|NP_174064.1| putative glycosyltransferase [Arabidopsis thaliana] gi|75272002|sp|Q9FZJ1.1|IRX10_ARATH RecName: Full=Probable beta-1,4-xylosyltransferase IRX10; AltName: Full=Glucuronoxylan glucuronosyltransferase 1; Short=AtGUT1; AltName: Full=Glucuronoxylan glucuronosyltransferase 2; AltName: Full=Protein IRREGULAR XYLEM 10; AltName: Full=Xylan xylosyltransferase IRX10 gi|9802541|gb|AAF99743.1|AC004557_22 F17L21.23 [Arabidopsis thaliana] gi|63003872|gb|AAY25465.1| At1g27440 [Arabidopsis thaliana] gi|98960979|gb|ABF58973.1| At1g27440 [Arabidopsis thaliana] gi|332192709|gb|AEE30830.1| putative glycosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224075447|ref|XP_002304637.1| predicted protein [Populus trichocarpa] gi|222842069|gb|EEE79616.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297851174|ref|XP_002893468.1| hypothetical protein ARALYDRAFT_472948 [Arabidopsis lyrata subsp. lyrata] gi|297339310|gb|EFH69727.1| hypothetical protein ARALYDRAFT_472948 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359473830|ref|XP_003631364.1| PREDICTED: probable beta-1,4-xylosyltransferase IRX10L-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540029|ref|XP_002511079.1| catalytic, putative [Ricinus communis] gi|223550194|gb|EEF51681.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449484890|ref|XP_004157009.1| PREDICTED: probable beta-1,4-xylosyltransferase IRX10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225456511|ref|XP_002284685.1| PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Vitis vinifera] gi|147860849|emb|CAN83159.1| hypothetical protein VITISV_022554 [Vitis vinifera] gi|297734521|emb|CBI15768.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508876|ref|XP_003523179.1| PREDICTED: probable beta-1,4-xylosyltransferase IRX10L-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
TAIR|locus:2016004412 GUT2 "AT1G27440" [Arabidopsis 0.995 0.980 0.894 8.2e-202
TAIR|locus:2159198415 GUT1 "AT5G61840" [Arabidopsis 0.972 0.951 0.856 1.7e-192
TAIR|locus:2172676469 F8H "AT5G22940" [Arabidopsis t 0.931 0.805 0.4 2.7e-75
TAIR|locus:2046163448 FRA8 "FRAGILE FIBER 8" [Arabid 0.852 0.772 0.416 6.5e-74
TAIR|locus:2125687593 AT4G32790 "AT4G32790" [Arabido 0.773 0.529 0.289 4e-26
TAIR|locus:1009023450518 AT5G03795 [Arabidopsis thalian 0.704 0.552 0.296 8.6e-26
TAIR|locus:2120933425 AT4G38040 "AT4G38040" [Arabido 0.310 0.296 0.325 8.9e-24
TAIR|locus:2145472480 AT5G25310 "AT5G25310" [Arabido 0.773 0.654 0.281 2.4e-23
TAIR|locus:2145254654 AT5G25820 "AT5G25820" [Arabido 0.763 0.474 0.286 4.8e-23
TAIR|locus:2152632547 AT5G37000 "AT5G37000" [Arabido 0.236 0.175 0.4 2.4e-22
TAIR|locus:2016004 GUT2 "AT1G27440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1953 (692.5 bits), Expect = 8.2e-202, P = 8.2e-202
 Identities = 363/406 (89%), Positives = 374/406 (92%)

Query:     3 VTAIALLLAFV--SADNTPKIERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLLKDP 60
             ++AI L L F   SA    + ERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLL KDP
Sbjct:     7 LSAILLFLFFSASSAKQNVRTERISGSAGDVLEDDPVGKLKVYVYELPSKYNKKLLQKDP 66

Query:    61 RCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRS 120
             RCLTHMFAAEIFMHRFLLSSPVRT NP+EADWFYTPIYPTCDLTPTGLPLPFKSPRMMRS
Sbjct:    67 RCLTHMFAAEIFMHRFLLSSPVRTRNPDEADWFYTPIYPTCDLTPTGLPLPFKSPRMMRS 126

Query:   121 AIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQR 180
             +IQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQR
Sbjct:   127 SIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQR 186

Query:   181 NHVCLNEGSITIPPYAPPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEXXXXXXXXXX 240
             NHVCL+EGSITIPP+APPQKMQAH IPPD PRSIFVYFRGLFYDVNNDPE          
Sbjct:   187 NHVCLDEGSITIPPFAPPQKMQAHFIPPDIPRSIFVYFRGLFYDVNNDPEGGYYARGARA 246

Query:   241 XVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD 300
              VWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD
Sbjct:   247 AVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD 306

Query:   301 DIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQP 360
             DIVLPFADAIPWEEIG+FVAE+DVP+LDTILTSIP EVILRKQRLLANPSMKRAMLFPQP
Sbjct:   307 DIVLPFADAIPWEEIGVFVAEKDVPELDTILTSIPTEVILRKQRLLANPSMKRAMLFPQP 366

Query:   361 AQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLKPW 406
             AQPGDAFHQILNGLARKLPHDKS YLK G K LNWT+GPV DLKPW
Sbjct:   367 AQPGDAFHQILNGLARKLPHDKSIYLKTGEKALNWTAGPVADLKPW 412
GO:0003824 "catalytic activity" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0009834 "secondary cell wall biogenesis" evidence=IMP
GO:0010417 "glucuronoxylan biosynthetic process" evidence=IMP
GO:0080116 "glucuronoxylan glucuronosyltransferase activity" evidence=IMP
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2159198 GUT1 "AT5G61840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172676 F8H "AT5G22940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046163 FRA8 "FRAGILE FIBER 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125687 AT4G32790 "AT4G32790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023450 AT5G03795 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120933 AT4G38040 "AT4G38040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145472 AT5G25310 "AT5G25310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145254 AT5G25820 "AT5G25820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152632 AT5G37000 "AT5G37000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FZJ1IRX10_ARATH2, ., 4, ., 2, ., -0.92110.99500.9805yesno
Q6H4N0GT21_ORYSJ2, ., 4, ., -, ., -0.86750.94820.8870nono
Q8S1X7GT15_ORYSJ2, ., 4, ., -, ., -0.89140.95320.9280yesno
Q8S1X9GT13_ORYSJ2, ., 4, ., -, ., -0.77410.97040.9336nono
Q8S1X8GT14_ORYSJ2, ., 4, ., -, ., -0.88310.94820.9277nono
Q33AH8GT101_ORYSJ2, ., 4, ., -, ., -0.76100.96790.9424nono
Q940Q8IX10L_ARATH2, ., 4, ., 2, ., -0.90120.94820.9277nono
Q7XLG3GT42_ORYSJ2, ., 4, ., -, ., -0.87270.94820.9166nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
pfam03016292 pfam03016, Exostosin, Exostosin family 3e-84
>gnl|CDD|217320 pfam03016, Exostosin, Exostosin family Back     alignment and domain information 
 Score =  258 bits (661), Expect = 3e-84
 Identities = 96/304 (31%), Positives = 140/304 (46%), Gaps = 23/304 (7%)

Query: 39  KLKVYVYELPSKYNKKL--LLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTP 96
            LKVYVY+LP ++N     L +    LTH +AAE  +H+ +L+S  RTL+P+EAD F+ P
Sbjct: 4   GLKVYVYDLPRRFNLLEDVLPETSWYLTHQYAAESILHKSILNSRCRTLDPDEADLFFVP 63

Query: 97  IYPTCDLTPTGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQE 156
            Y +  +    +         + S +     + PYWNR+ G DH  V  H FG     + 
Sbjct: 64  FYTSLSVGTNAVERDL-----LPSELVEWLESLPYWNRSGGRDHIIVNSHPFGGSAFDRL 118

Query: 157 EKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPQKMQAHQ--IPPDTPRSI 214
                  IL +L        F +       +  + +P Y  P  +   +    P + R  
Sbjct: 119 PALNNNTILAVLAGGG----FSEDQFRPGFD--VPLPAYFHPNSVDDLESDGMPPSKRKT 172

Query: 215 FVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLF----DISTDHPTTYYEDMQRAI 270
            ++F G                  R  + E  KN+P F    + S  +P  Y E ++ + 
Sbjct: 173 LLFFAGGPRPAGKGALAN----AIRDLLIEECKNSPDFQCEGNQSCGNPENYMELLRSSR 228

Query: 271 FCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTI 330
           FCL P G  P SPRL +A+  GCIPVII+D   LPF D I W +  + V E D+P L  I
Sbjct: 229 FCLVPPGDTPTSPRLFDALRAGCIPVIISDGWELPFEDVIDWSKFSVRVPENDIPSLPEI 288

Query: 331 LTSI 334
           L +I
Sbjct: 289 LRAI 292

The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. Length = 292

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 406
PF03016302 Exostosin: Exostosin family; InterPro: IPR004263 H 100.0
KOG1021464 consensus Acetylglucosaminyltransferase EXT1/exost 100.0
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 99.95
KOG1022 691 consensus Acetylglucosaminyltransferase EXT2/exost 99.82
cd03801374 GT1_YqgM_like This family is most closely related 95.59
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 95.5
cd03820348 GT1_amsD_like This family is most closely related 95.37
PF00852349 Glyco_transf_10: Glycosyltransferase family 10 (fu 95.26
cd03819355 GT1_WavL_like This family is most closely related 95.18
cd03814364 GT1_like_2 This family is most closely related to 95.04
cd03822366 GT1_ecORF704_like This family is most closely rela 94.74
cd03794394 GT1_wbuB_like This family is most closely related 94.71
cd03818396 GT1_ExpC_like This family is most closely related 94.15
cd03808359 GT1_cap1E_like This family is most closely related 93.94
cd04962371 GT1_like_5 This family is most closely related to 93.69
cd03807365 GT1_WbnK_like This family is most closely related 93.59
cd03800398 GT1_Sucrose_synthase This family is most closely r 93.41
cd03823359 GT1_ExpE7_like This family is most closely related 93.21
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 93.06
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 92.67
PLN02871465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 92.64
PRK15427406 colanic acid biosynthesis glycosyltransferase WcaL 92.62
cd03798377 GT1_wlbH_like This family is most closely related 92.47
cd03809365 GT1_mtfB_like This family is most closely related 92.17
cd03821375 GT1_Bme6_like This family is most closely related 92.08
TIGR03449405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 91.17
TIGR02149388 glgA_Coryne glycogen synthase, Corynebacterium fam 90.77
PRK09814333 beta-1,6-galactofuranosyltransferase; Provisional 90.39
cd04951360 GT1_WbdM_like This family is most closely related 90.07
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 89.76
PF1352492 Glyco_trans_1_2: Glycosyl transferases group 1 89.56
cd03805392 GT1_ALG2_like This family is most closely related 88.91
PRK10307412 putative glycosyl transferase; Provisional 88.73
PRK15484380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 88.51
cd03792372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 88.26
cd03802335 GT1_AviGT4_like This family is most closely relate 88.09
cd04955363 GT1_like_6 This family is most closely related to 88.0
TIGR03087397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 87.44
cd03813475 GT1_like_3 This family is most closely related to 87.44
cd03804351 GT1_wbaZ_like This family is most closely related 87.06
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 87.05
cd04949372 GT1_gtfA_like This family is most closely related 86.24
TIGR02472439 sucr_P_syn_N sucrose-phosphate synthase, putative, 85.93
TIGR02095473 glgA glycogen/starch synthases, ADP-glucose type. 85.2
PRK14099485 glycogen synthase; Provisional 84.86
cd03817374 GT1_UGDG_like This family is most closely related 84.47
cd03825365 GT1_wcfI_like This family is most closely related 84.44
cd03806419 GT1_ALG11_like This family is most closely related 83.71
PRK00654466 glgA glycogen synthase; Provisional 83.17
PF0091998 UPF0004: Uncharacterized protein family UPF0004; I 82.58
cd03811353 GT1_WabH_like This family is most closely related 81.63
PRK14098489 glycogen synthase; Provisional 81.35
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses [] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-58  Score=449.68  Aligned_cols=285  Identities=39%  Similarity=0.731  Sum_probs=225.5

Q ss_pred             CCCceEEEEcCCCcCCccccc-----cCCccccCchhhHHHHHHHHccCCccCCCcCCCcEEEeecCCcccc-CCCCCCC
Q 038885           37 VGKLKVYVYELPSKYNKKLLL-----KDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDL-TPTGLPL  110 (406)
Q Consensus        37 ~~~~kIYVYdlP~~fn~~~l~-----~~~~~~~~~y~~E~~~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~-~~~~~~~  110 (406)
                      +.++||||||+|++||++++.     ....|.+++|++|.+|+++|++|+++|.||+|||+||||++.+|.. ..++.+.
T Consensus         2 ~~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~~~   81 (302)
T PF03016_consen    2 HRGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGSPN   81 (302)
T ss_pred             CCCCEEEEEeCCccccccceeccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCCcc
Confidence            568999999999999988872     3456788999999999999999999999999999999999998873 1122222


Q ss_pred             CCChhHHHHHHHHHHHhcCcccccCCCcceEEeecCCCCcccchhhHHHHhhCchhHhhccceee-ecCCCCccc-cCCC
Q 038885          111 PFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQ-TFGQRNHVC-LNEG  188 (406)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~PyWnR~~G~DH~~v~~~D~G~~~~~~~~~a~~~~~~~~~~n~~~l~-~~g~~~~~~-~~~~  188 (406)
                      .........+++..+.+++|||||++|+||||++++|+|.|......        .+..+.+... ..+.....| .+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  153 (302)
T PF03016_consen   82 SGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNP--------RLMNNSIRAVVAFSSFSSSCFRPGF  153 (302)
T ss_pred             chhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccH--------hhhccchhheeccCCCCcCcccCCC
Confidence            22334556677777778999999999999999999999987643221        1222222222 222222333 4667


Q ss_pred             ceecCCCCCCCccccCC---CCCCCCCceeeeecccccccCCCCCCCccchhhHHHHHHHhcCCCceEee-----cCCcc
Q 038885          189 SITIPPYAPPQKMQAHQ---IPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDIS-----TDHPT  260 (406)
Q Consensus       189 DI~iPp~~~p~~~~~~~---~~~~~~R~~l~~F~G~~~~~~~~~~~~~ys~~iR~~l~~~~~~~~~~~~~-----~~~~~  260 (406)
                      ||++|++.++.....+.   .....+|++|++|+|.......+     ++.++|+.|++.|++.+++.+.     +..+.
T Consensus       154 Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~-----~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
T PF03016_consen  154 DIVIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSND-----YSGGVRQRLLDECKSDPDFRCSDGSETCPSPS  228 (302)
T ss_pred             CeeccccccccccCCccccccCCccCCceEEEEeeeccccccc-----cchhhhhHHHHhcccCCcceeeecccccccch
Confidence            99999987655433222   23567899999999997653221     4568999999999988876643     23456


Q ss_pred             cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC
Q 038885          261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI  334 (406)
Q Consensus       261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i  334 (406)
                      +|.+.|++|+|||||+|+++++.||+|||++|||||||+|.+.|||+++|||++|||+|+++++++|+++|++|
T Consensus       229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i  302 (302)
T PF03016_consen  229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI  302 (302)
T ss_pred             HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999986

Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 96.68
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 95.31
3okp_A394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 94.69
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 94.67
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 93.86
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 93.56
2nzw_A371 Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {H 93.55
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 93.19
2f9f_A177 First mannosyl transferase (WBAZ-1); alpha-beta pr 92.72
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 92.67
3oy2_A413 Glycosyltransferase B736L; rossmann fold, GDP-mann 91.19
2r60_A499 Glycosyl transferase, group 1; rossmann-fold; 1.80 91.18
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 89.22
2x0d_A413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 86.73
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 86.26
1rzu_A485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 84.28
3rhz_A339 GTF3, nucleotide sugar synthetase-like protein; gl 83.68
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 81.54
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
Probab=96.68  E-value=0.002  Score=54.96  Aligned_cols=94  Identities=13%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CH
Q 038885          259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PP  336 (406)
Q Consensus       259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~  336 (406)
                      ..+..+.++.+..++.|.-..+.+..+.|||.+||+|||..+..- ...+++.-...  .++..+..++.+.|..+  ++
T Consensus        65 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~-~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~~~~  141 (166)
T 3qhp_A           65 SNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLS-ATRQFALDERS--LFEPNNAKDLSAKIDWWLENK  141 (166)
T ss_dssp             HHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTC-GGGGGCSSGGG--EECTTCHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCC-chhhhccCCce--EEcCCCHHHHHHHHHHHHhCH
Confidence            356789999999999998777888999999999999999943211 11222222233  56666776665555443  56


Q ss_pred             HHHHHHHHHhcccccccceee
Q 038885          337 EVILRKQRLLANPSMKRAMLF  357 (406)
Q Consensus       337 ~~~~~mq~~l~~~~~~~~f~y  357 (406)
                      +...+|.++..+  ....|.|
T Consensus       142 ~~~~~~~~~~~~--~~~~~s~  160 (166)
T 3qhp_A          142 LERERMQNEYAK--SALNYTL  160 (166)
T ss_dssp             HHHHHHHHHHHH--HHHHHC-
T ss_pred             HHHHHHHHHHHH--HHHHCCh
Confidence            667777776553  2244544
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
d2nzwa1349 Alpha1,3-fucosyltransferase FucT {Helicobacter pyl 96.13
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 90.46
d2bisa1437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 89.33
d1rzua_477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 87.79
d2bfwa1196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 85.05
d2f9fa1166 First mannosyl transferase WbaZ {Archaeoglobus ful 84.13
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: FucT-like
domain: Alpha1,3-fucosyltransferase FucT
species: Helicobacter pylori [TaxId: 210]

Probab=96.13  E-value=0.0047  Score=58.51  Aligned_cols=101  Identities=10%  Similarity=0.084  Sum_probs=68.1

Q ss_pred             hhHHHHHHHhcCCCceEeec-------CCcccHHHhhhccceEEecCCC---CCCchhHHHHHHhCceeEEEecc-c--c
Q 038885          237 GARAAVWENFKNNPLFDIST-------DHPTTYYEDMQRAIFCLCPLGW---APWSPRLVEAVVFGCIPVIIADD-I--V  303 (406)
Q Consensus       237 ~iR~~l~~~~~~~~~~~~~~-------~~~~~y~~~l~~S~FCL~p~G~---~~~s~rl~dal~~GCIPVii~d~-~--~  303 (406)
                      +.|..+++.+.+-..+++..       .....-.+.|++.+|+||....   +-.+-.++||+.+|||||..++. +  .
T Consensus       193 ~~R~~~~~~L~k~~~Vd~~G~~~nn~~~~~~~K~~~l~~ykF~l~~EN~~~~~YvTEKi~da~~~g~iPIy~G~~~i~~~  272 (349)
T d2nzwa1         193 PIRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKD  272 (349)
T ss_dssp             HHHHHHHHHHTTTSCCEECSSTTCCSSSCCSCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGT
T ss_pred             chHHHHHHHHhccCeecccCccccCCCCchhhHHHHHhCCCeEEEECCcCCCCCcchHHHHHHhCCeEEEEECCCcHHHc
Confidence            58999999887655554421       1124567889999999997432   34689999999999999999963 2  2


Q ss_pred             CCCCCCCCCCceEEEecCCChhcHHHHHhCCC--HHHHHHHH
Q 038885          304 LPFADAIPWEEIGMFVAEEDVPKLDTILTSIP--PEVILRKQ  343 (406)
Q Consensus       304 lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~--~~~~~~mq  343 (406)
                      +|=...|+..+|      +.+.++.+.|..++  ++.+.+|-
T Consensus       273 f~~~sfI~~~df------~s~~el~~~i~~l~~n~~~Y~~~~  308 (349)
T d2nzwa1         273 FNPKSFVNVHDF------KNFDEAIDYIKYLHTHKNAYLDML  308 (349)
T ss_dssp             SCGGGSEEGGGS------SSHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCccEEEhhhC------CCHHHHHHHHHHHhcCHHHHHHHH
Confidence            442333333333      36777888888775  44555554
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure