Citrus Sinensis ID: 038890
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 569 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJY7 | 620 | Pentatricopeptide repeat- | yes | no | 0.840 | 0.770 | 0.417 | 1e-120 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.894 | 0.787 | 0.373 | 1e-108 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.933 | 0.949 | 0.393 | 1e-108 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.826 | 0.820 | 0.412 | 1e-105 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.813 | 0.679 | 0.413 | 1e-103 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.905 | 0.750 | 0.350 | 1e-101 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.906 | 0.816 | 0.356 | 4e-97 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.852 | 0.779 | 0.357 | 7e-97 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.868 | 0.925 | 0.354 | 1e-96 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.834 | 0.896 | 0.377 | 5e-94 |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/493 (41%), Positives = 316/493 (64%), Gaps = 15/493 (3%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGS-LSYATNVFSHIKR 93
+ C ELK+IH +++K+ +Q D ++ IT+ L FC S S L YA VF R
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQ--DSYA-ITKFLSFCISSTSSDFLPYAQIVFDGFDR 77
Query: 94 SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG 153
D + +N+MIR +C + L LY++MLC+ + TFP LLK C+
Sbjct: 78 PDTFLWNLMIRGFSCSDEPE------RSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAF 131
Query: 154 LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGY 213
++ Q+ K G +DV+ NS+I+ + G A +LFD + D VSWN++I GY
Sbjct: 132 EETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGY 191
Query: 214 LRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK 273
+++G +D+AL LFR+M ++N SW ++I+G+VQ +EAL+LF EMQ+S VE PD
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE----PDN 247
Query: 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333
+++A+ LSACA LGA++ GKW+H YL ++ + D V+G L+DMY KCG +E A VFK
Sbjct: 248 VSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKN 307
Query: 334 MPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393
+ KK AWTA+IS +A +G+G+EA F EM+ G++PN +TF +L+AC+++GLVE+G
Sbjct: 308 IKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEG 367
Query: 394 RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQ 453
+ F M Y ++P + HY C++D+L RAGL EA+R I+ MP++P+ +WGALL C+
Sbjct: 368 KLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACR 427
Query: 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513
+H N+ELGE++ + LI +DP + YV+ +++A ++D +TR LMKE+G+ K VPG
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK-VPG 486
Query: 514 CSSVEVDGVVHEF 526
CS++ ++G HEF
Sbjct: 487 CSTISLEGTTHEF 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/538 (37%), Positives = 333/538 (61%), Gaps = 29/538 (5%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSV--SGSLSYATNVFSHIK 92
I+ C+ +R+L +IH IKS ++ + I R FCA S L YA +F+ +
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILR---FCATSDLHHRDLDYAHKIFNQMP 86
Query: 93 RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTG-ISPDCLTFPFLLKECTKRL 151
+ + +++N +IR SE+++ + + L+ +M+ + P+ TFP +LK C K
Sbjct: 87 QRNCFSWNTIIRG----FSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTG 142
Query: 152 DGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDE---------MSNR- 201
G ++G +K+G D FV ++++ +++ CGF+ AR+LF + M++R
Sbjct: 143 KIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRR 202
Query: 202 ----DVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELF 257
++V WN MI GY+R GD A LF +M++R++ SWN++I+G+ G ++A+E+F
Sbjct: 203 KRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVF 262
Query: 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317
+EM+ + +P+ +T+ SVL A + LG+++ G+W+H Y SG+ D V+G+AL+DM
Sbjct: 263 REMKKGDI----RPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDM 318
Query: 318 YGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTF 377
Y KCG +E+A VF+ +P+++ + W+AMI+ FA++G +A D F +M GVRP+ V +
Sbjct: 319 YSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAY 378
Query: 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMP 437
+ LL+AC+H GLVE+GR F M V +EP + HY CM+D+L R+GL EAE I +MP
Sbjct: 379 INLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP 438
Query: 438 MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497
++PD +W ALLG C+M GNVE+G++VA L+D+ P + YV L +MYA G + +V +
Sbjct: 439 IKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSE 498
Query: 498 TRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
R MKE+ IRK+ PGCS +++DGV+HEF ++ +E+ +L +S ++ G+
Sbjct: 499 MRLRMKEKDIRKD-PGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/552 (39%), Positives = 329/552 (59%), Gaps = 21/552 (3%)
Query: 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLI 66
++S+S + PA S S LR +C MRELK+IH +IK+ + S
Sbjct: 5 ILSFSGVTVPAMPSS-GSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTAS-- 61
Query: 67 TRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYK 126
R+L FC S S ++YA VF+ I + + +N +IR + + + ++
Sbjct: 62 -RVLAFCCASPS-DMNYAYLVFTRINHKNPFVWNTIIRGF------SRSSFPEMAISIFI 113
Query: 127 QMLCTG--ISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMA 184
MLC+ + P LT+P + K + G ++G V+K G+ DD F++N+++ +++
Sbjct: 114 DMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVT 173
Query: 185 CGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGF 244
CG + A +F M DVV+WN+MI+G+ + G +D A +LF M +RN SWNS+I+GF
Sbjct: 174 CGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGF 233
Query: 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304
V+ GR ++AL++F+EMQ E+ VKPD T+ S+L+ACAYLGA + G+W+H Y+ R+
Sbjct: 234 VRNGRFKDALDMFREMQ----EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRF 289
Query: 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFRE 364
+ + ++ TAL+DMY KCGC+E VF+ PKK W +MI A NG+ + A D F E
Sbjct: 290 ELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSE 349
Query: 365 MEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424
+E G+ P+ V+F+G+L+ACAHSG V + F +M+ Y++EP + HY M+++L AG
Sbjct: 350 LERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAG 409
Query: 425 LFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484
L EAE LI++MP+E D +W +LL C+ GNVE+ ++ A+ L LDP YV L +
Sbjct: 410 LLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSN 469
Query: 485 MYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGS--PKVVK-EELVL 541
YA G F++ + R LMKER + KEV GCSS+EVD VHEF G PK + L+
Sbjct: 470 AYASYGLFEEAVEQRLLMKERQMEKEV-GCSSIEVDFEVHEFISCGGTHPKSAEIYSLLD 528
Query: 542 ILNGLSKIMKNG 553
ILN +K+G
Sbjct: 529 ILNWDVSTIKSG 540
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/480 (41%), Positives = 306/480 (63%), Gaps = 10/480 (2%)
Query: 81 LSYATNVFSHIKRSDL--YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138
++YA +F HI+ L + +NI+IRA + + HS + +Y +M +SPD
Sbjct: 8 IAYANPIF-HIRHLKLESFLWNIIIRA-IVHNVSSPQRHSP--ISVYLRMRNHRVSPDFH 63
Query: 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198
TFPFLL L +G + Q++ FG+ D FV+ S+++++ +CG + SA+ +FD+
Sbjct: 64 TFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDS 123
Query: 199 SNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258
++D+ +WN+++ Y ++G +D A LF M +RN+ SW+ +I G+V G+ +EAL+LF+
Sbjct: 124 GSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFR 183
Query: 259 EMQ-SSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317
EMQ E V+P++ T+++VLSAC LGA++ GKWVH Y+ + ++ D+V+GTAL+DM
Sbjct: 184 EMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDM 243
Query: 318 YGKCGCVERAYGVFKEM-PKKDTLAWTAMISVFALNGYGKEAFDTFREME-AEGVRPNHV 375
Y KCG +ERA VF + KKD A++AMI A+ G E F F EM ++ + PN V
Sbjct: 244 YAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSV 303
Query: 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435
TFVG+L AC H GL+ +G+ F MM + + P + HY CM+D+ R+GL EAE I S
Sbjct: 304 TFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIAS 363
Query: 436 MPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495
MPMEPDV +WG+LL G +M G+++ E + LI+LDP+N YV L ++YAK GR+ +V
Sbjct: 364 MPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEV 423
Query: 496 KKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
K R+ M+ +GI K VPGCS VEV+GVVHEF + + E + +L+ + + ++ G+
Sbjct: 424 KCIRHEMEVKGINK-VPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGY 482
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 288/474 (60%), Gaps = 11/474 (2%)
Query: 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138
G + A VF DL ++N +I K E K + +YK M G+ PD +
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYK-KIGEAE-----KAIYVYKLMESEGVKPDDV 258
Query: 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198
T L+ C+ D G Y V + G+ + + N+++ +F CG + AR +FD +
Sbjct: 259 TMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNL 318
Query: 199 SNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258
R +VSW MI GY R G LDV+ LF M+++++ WN++I G VQ R ++AL LFQ
Sbjct: 319 EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQ 378
Query: 259 EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318
EMQ+S+ KPD+IT+ LSAC+ LGA+D G W+H Y+ + L +V +GT+LVDMY
Sbjct: 379 EMQTSNT----KPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMY 434
Query: 319 GKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFV 378
KCG + A VF + +++L +TA+I AL+G A F EM G+ P+ +TF+
Sbjct: 435 AKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFI 494
Query: 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM 438
GLLSAC H G+++ GR F M+ + + P + HY+ M+D+L RAGL EA+RL+ SMPM
Sbjct: 495 GLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPM 554
Query: 439 EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT 498
E D VWGALL GC+MHGNVELGEK A+ L++LDP + YV L MY +A ++D K+
Sbjct: 555 EADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRA 614
Query: 499 RNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKN 552
R +M ERG+ K +PGCSS+EV+G+V EF ++ + E++ L+ L + M++
Sbjct: 615 RRMMNERGVEK-IPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRS 667
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/568 (35%), Positives = 319/568 (56%), Gaps = 53/568 (9%)
Query: 25 ESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYA 84
+ T +L +D ++R L+ +H++II L+ N SL +L+ A + ++ A
Sbjct: 39 QETVFLLGQVLDTYPDIRTLRTVHSRIILED-LRCNS--SLGVKLMR--AYASLKDVASA 93
Query: 85 TNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLL 144
VF I ++ N+MIR S N+ G+ +K++ M + PD TFP +L
Sbjct: 94 RKVFDEIPERNVIIINVMIR------SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVL 147
Query: 145 KECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVV 204
K C+ ++G ++G K G+ +FV N ++S++ CGF++ AR++ DEMS RDVV
Sbjct: 148 KACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 207
Query: 205 SWNAMIIGYLRSGDLDVAL-------------------------------------DLFR 227
SWN++++GY ++ D AL D+F
Sbjct: 208 SWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFF 267
Query: 228 RMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG 287
+M K+++ SWN +I +++ EA+EL+ M++ E PD ++I SVL AC
Sbjct: 268 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFE----PDAVSITSVLPACGDTS 323
Query: 288 AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMIS 347
A+ GK +HGY+ R L ++++ AL+DMY KCGC+E+A VF+ M +D ++WTAMIS
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383
Query: 348 VFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVE 407
+ +G G +A F +++ G+ P+ + FV L+AC+H+GL+E+GR CF +M Y +
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443
Query: 408 PHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQY 467
P + H ACM+D+L RAG EA R I+ M MEP+ VWGALLG C++H + ++G A
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADK 503
Query: 468 LIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFS 527
L L P +YV L ++YAKAGR+++V RN+MK +G++K PG S+VEV+ ++H F
Sbjct: 504 LFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN-PGASNVEVNRIIHTFL 562
Query: 528 MKGSPKVVKEELVLILNGLSKIMKNGGF 555
+ +E+ L+ L K MK G+
Sbjct: 563 VGDRSHPQSDEIYRELDVLVKKMKELGY 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 192/539 (35%), Positives = 312/539 (57%), Gaps = 23/539 (4%)
Query: 18 KVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSV 77
++ PP K L ID+ +++ E+ +IH I++ L + L L A +
Sbjct: 25 RLPPPEK------LAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVL--NLKLHRAYAS 76
Query: 78 SGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC 137
G + ++ +F DL+ + I N + D + LY Q+L + I+P+
Sbjct: 77 HGKIRHSLALFHQTIDPDLFLFTAAI--NTASINGLKD----QAFLLYVQLLSSEINPNE 130
Query: 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDE 197
TF LLK C+ + G ++ V+KFG+ D +V ++ ++ G V SA+ +FD
Sbjct: 131 FTFSSLLKSCSTK----SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR 186
Query: 198 MSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELF 257
M R +VS AMI Y + G+++ A LF M +R+I SWN +I G+ Q G +AL LF
Sbjct: 187 MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLF 246
Query: 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317
Q++ + E KPD+IT+ + LSAC+ +GA++ G+W+H +++ S + +V + T L+DM
Sbjct: 247 QKLLA---EGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDM 303
Query: 318 YGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEA-EGVRPNHVT 376
Y KCG +E A VF + P+KD +AW AMI+ +A++GY ++A F EM+ G++P +T
Sbjct: 304 YSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDIT 363
Query: 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436
F+G L ACAH+GLV +G F M Y ++P + HY C++ +L RAG A I++M
Sbjct: 364 FIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNM 423
Query: 437 PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVK 496
M+ D +W ++LG C++HG+ LG+++A+YLI L+ N YV L ++YA G ++ V
Sbjct: 424 NMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVA 483
Query: 497 KTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
K RNLMKE+GI KE PG S++E++ VHEF +E+ +L +S+ +K+ G+
Sbjct: 484 KVRNLMKEKGIVKE-PGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGY 541
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 180/504 (35%), Positives = 313/504 (62%), Gaps = 19/504 (3%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGS-----LSYATNVFS 89
+ C + +LK IH ++++ + + +RLL C + + L YA +FS
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDV---FVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 90 HIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK 149
I+ +L+ +N++IR C S+ + K Y QML + I PD +TFPFL+K ++
Sbjct: 76 QIQNPNLFVFNLLIR---CFSTGAEPS---KAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 150 RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAM 209
LVG + Q+V+FG +DV+V+NS++ ++ CGF+ +A +F +M RDVVSW +M
Sbjct: 130 MECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189
Query: 210 IIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMV 269
+ GY + G ++ A ++F M RN+F+W+ +I G+ + +A++LF+ M+ E V
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMK----REGV 245
Query: 270 KPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYG 329
++ + SV+S+CA+LGA++ G+ + Y+ +S + ++++GTALVDM+ +CG +E+A
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIH 305
Query: 330 VFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389
VF+ +P+ D+L+W+++I A++G+ +A F +M + G P VTF +LSAC+H GL
Sbjct: 306 VFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGL 365
Query: 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALL 449
VEKG + M+ + +EP + HY C++D+L RAG +EAE I M ++P+ + GALL
Sbjct: 366 VEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALL 425
Query: 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRK 509
G C+++ N E+ E+V LI + P + +YV L ++YA AG++D ++ R++MKE+ ++K
Sbjct: 426 GACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKK 485
Query: 510 EVPGCSSVEVDGVVHEFSMKGSPK 533
PG S +E+DG +++F+M K
Sbjct: 486 P-PGWSLIEIDGKINKFTMGDDQK 508
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 181/511 (35%), Positives = 300/511 (58%), Gaps = 17/511 (3%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS 94
+ K+ E K+I+ II Q++ ++T+++ FC + YAT +F+ +
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSS---FMVTKMVDFC--DKIEDMDYATRLFNQVSNP 71
Query: 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGIS-PDCLTFPFLLKECTKRLDG 153
+++ YN +IRA T+++ +++YKQ+L PD TFPF+ K C
Sbjct: 72 NVFLYNSIIRA------YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSC 125
Query: 154 LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGY 213
+G V+G + KFG V +N++I ++M + A +FDEM RDV+SWN+++ GY
Sbjct: 126 YLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGY 185
Query: 214 LRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK 273
R G + A LF M + I SW ++I+G+ G EA++ F+EMQ + +E PD+
Sbjct: 186 ARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIE----PDE 241
Query: 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333
I++ SVL +CA LG+++ GKW+H Y R G + AL++MY KCG + +A +F +
Sbjct: 242 ISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQ 301
Query: 334 MPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393
M KD ++W+ MIS +A +G A +TF EM+ V+PN +TF+GLLSAC+H G+ ++G
Sbjct: 302 MEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEG 361
Query: 394 RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQ 453
F MMR Y +EP + HY C+ID+L+RAG A + ++MPM+PD +WG+LL C+
Sbjct: 362 LRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCR 421
Query: 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513
GN+++ +L++L+P + YV L ++YA G+++DV + R +++ ++K PG
Sbjct: 422 TPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK-TPG 480
Query: 514 CSSVEVDGVVHEFSMKGSPKVVKEELVLILN 544
S +EV+ +V EF + K E+ ++L
Sbjct: 481 GSLIEVNNIVQEFVSGDNSKPFWTEISIVLQ 511
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (886), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 185/490 (37%), Positives = 292/490 (59%), Gaps = 15/490 (3%)
Query: 39 KNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYT 98
N++ LK+ H +I + + N + F A S +G L YA +VF+H + Y
Sbjct: 26 NNLKTLKQSHCYMIITGLNRDN-----LNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYL 80
Query: 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGAS 158
+N MIRA + + + HS + +Y+++ PD TFPF+LK + D G
Sbjct: 81 HNTMIRALSLL--DEPNAHS-IAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQ 137
Query: 159 VYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGD 218
++GQVV FG V V +I ++ +CG + AR +FDEM +DV WNA++ GY + G+
Sbjct: 138 IHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGE 197
Query: 219 LDVALDLFRRMK--KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITI 276
+D A L M RN SW +I+G+ + GRA EA+E+FQ M + E V+PD++T+
Sbjct: 198 MDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRM----LMENVEPDEVTL 253
Query: 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK 336
+VLSACA LG+++ G+ + Y+ G++ V + A++DMY K G + +A VF+ + +
Sbjct: 254 LAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNE 313
Query: 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396
++ + WT +I+ A +G+G EA F M GVRPN VTF+ +LSAC+H G V+ G+
Sbjct: 314 RNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRL 373
Query: 397 FVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHG 456
F MR Y + P++ HY CMID+L RAG EA+ +I+SMP + + +WG+LL +H
Sbjct: 374 FNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHH 433
Query: 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSS 516
++ELGE+ LI L+P N Y+ L ++Y+ GR+D+ + RN+MK G++K + G SS
Sbjct: 434 DLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKK-MAGESS 492
Query: 517 VEVDGVVHEF 526
+EV+ V++F
Sbjct: 493 IEVENRVYKF 502
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 569 | ||||||
| 356529553 | 540 | PREDICTED: pentatricopeptide repeat-cont | 0.922 | 0.972 | 0.664 | 0.0 | |
| 357503973 | 541 | Pentatricopeptide repeat protein [Medica | 0.926 | 0.974 | 0.612 | 0.0 | |
| 255539647 | 554 | pentatricopeptide repeat-containing prot | 0.632 | 0.649 | 0.680 | 1e-142 | |
| 15239979 | 620 | pentatricopeptide repeat-containing prot | 0.840 | 0.770 | 0.417 | 1e-118 | |
| 147832325 | 622 | hypothetical protein VITISV_030261 [Viti | 0.875 | 0.800 | 0.394 | 1e-118 | |
| 296088765 | 595 | unnamed protein product [Vitis vinifera] | 0.910 | 0.870 | 0.404 | 1e-118 | |
| 225425100 | 622 | PREDICTED: pentatricopeptide repeat-cont | 0.875 | 0.800 | 0.394 | 1e-117 | |
| 297797743 | 649 | pentatricopeptide repeat-containing prot | 0.868 | 0.761 | 0.412 | 1e-117 | |
| 225466163 | 624 | PREDICTED: pentatricopeptide repeat-cont | 0.920 | 0.839 | 0.407 | 1e-115 | |
| 225466196 | 537 | PREDICTED: pentatricopeptide repeat-cont | 0.915 | 0.970 | 0.416 | 1e-113 |
| >gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/531 (66%), Positives = 424/531 (79%), Gaps = 6/531 (1%)
Query: 25 ESTKLILRNA----IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGS 80
ES L LRN I++CKN+RELK+ HTQI+KSP L T D + LITRLL+ C+ S GS
Sbjct: 11 ESLSLTLRNTLSRLIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGS 70
Query: 81 LSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF 140
SYATNVF IK DL YNIMIRA S +DTH K L LYKQM C I P+CLTF
Sbjct: 71 FSYATNVFHMIKNPDLRAYNIMIRAYISMES-GDDTHFCKALMLYKQMFCKDIVPNCLTF 129
Query: 141 PFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN 200
PFLLK CT+ LDG G +++ QV+KFG DV+V NS+ISL+MA G +++AR +FDEM
Sbjct: 130 PFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLV 189
Query: 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEM 260
DVV+WN+M+IG LR+G LD+A+DLFR+M RNI +WNSIITG QGG A+E+LELF EM
Sbjct: 190 TDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEM 249
Query: 261 QSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320
Q S ++MVKPDKITIASVLSACA LGAIDHGKWVHGYLRR+G++CDVVIGTALV+MYGK
Sbjct: 250 QILS-DDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGK 308
Query: 321 CGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGL 380
CG V++A+ +F+EMP+KD AWT MISVFAL+G G +AF+ F EME GV+PNHVTFVGL
Sbjct: 309 CGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGL 368
Query: 381 LSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP 440
LSACAHSGLVE+GRWCF +M+ VY +EP VYHYACM+DILSRA LF E+E LIRSMPM+P
Sbjct: 369 LSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKP 428
Query: 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500
DV+VWGALLGGCQMHGNVELGEKV +LIDL+P NHAFYVN CD+YAKAG FD K+ RN
Sbjct: 429 DVYVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRN 488
Query: 501 LMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMK 551
+MKE+ I K++PGCS +E++G V EFS GS ++ +ELVL+LNGLS MK
Sbjct: 489 IMKEKRIEKKIPGCSMIEINGEVQEFSAGGSSELPMKELVLVLNGLSNEMK 539
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/531 (61%), Positives = 409/531 (77%), Gaps = 4/531 (0%)
Query: 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSL 81
P + K L I++CKN++E+K IHT I+KSP L T D + L TRLL+FC+ S S
Sbjct: 13 PKNLTLKNTLSTLIEQCKNLKEIKIIHTHILKSPILHTRDQYYLFTRLLYFCSFSNYASF 72
Query: 82 SYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFP 141
+YA NVF IK +L YNIMIR+ C + K L LYKQML GI P+ LTFP
Sbjct: 73 NYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNLTFP 132
Query: 142 FLLKECTK-RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN 200
FL+K C++ + G VG ++ V+KFG +DVFV NS+ISLFM G +AR +FDEM
Sbjct: 133 FLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFV 192
Query: 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEM 260
RDVVSWN+M++GYLR+G++++AL+LFR+M RNI +WNSIITG VQ G A+E+LE+F EM
Sbjct: 193 RDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEM 252
Query: 261 QSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320
Q S +++VKPDKITIASVLSACA LG+IDHGKWVH YLR++ ++CDVVIGTALV+MYGK
Sbjct: 253 QFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGK 312
Query: 321 CGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGL 380
CG V++A +F +MP+KD AWTAMISVFAL+G+GK+AFD F EME GV+PNHVTFVGL
Sbjct: 313 CGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGL 372
Query: 381 LSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP 440
LSAC+HSGLVE+GR CF +M+ VY +EP +YHYACM+DILSRA LF EA LIRSMPM+P
Sbjct: 373 LSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKP 432
Query: 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500
DV+VWGALLGGCQMHGN++LGEKVA YLIDL+P NHAFY+NLCD+Y KAG++D K+ RN
Sbjct: 433 DVYVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRN 492
Query: 501 LMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMK 551
MKERGI ++PGCS +E++GVV EFS+ P +EL L+L+ L MK
Sbjct: 493 SMKERGIETKIPGCSIIEINGVVQEFSVGEIP---MKELPLVLDRLRNEMK 540
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/366 (68%), Positives = 295/366 (80%), Gaps = 6/366 (1%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS 94
I CKN+ +LK+IH I+ SP L DH+ LI+RLLFF ALS SGSL+YA ++F +IK+
Sbjct: 5 IQHCKNINQLKQIHALILTSPNLDQKDHYFLISRLLFFAALSDSGSLAYAADIFHYIKKP 64
Query: 95 DLYTYNIMIRANACKSS-ETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG 153
+L YNIMIRA A KS+ + +D + L LYKQMLC ISPDCLTFPFLLKECT+ +
Sbjct: 65 NLPFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDISPDCLTFPFLLKECTRNVAI 124
Query: 154 LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGY 213
G ++G +K G+ D+FVQNS+IS + AC FV+++R LFDEMSNRDVVSWN+MIIGY
Sbjct: 125 YGGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKLFDEMSNRDVVSWNSMIIGY 184
Query: 214 LRSGDLDVALDLFRRMK-KRNIFSWNSIITGFVQGGRAREALELFQEMQ----SSSVEEM 268
LRSGDLD +L+LFR+MK RN+ +WNSIITGFVQGGR +EALE F EMQ +
Sbjct: 185 LRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINNK 244
Query: 269 VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAY 328
V+PDKITIASVLSACA+LGAIDHGKWVH YLRRSGL+CD+VIGTALVDMYGKCGC++RAY
Sbjct: 245 VRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGCLQRAY 304
Query: 329 GVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG 388
VF+EM +KDTLAWTAMISVFALNG+GKEAFD F EMEA GV+PN VTFVGLLSACAHSG
Sbjct: 305 EVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGGVKPNLVTFVGLLSACAHSG 364
Query: 389 LVEKGR 394
LVE GR
Sbjct: 365 LVETGR 370
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/493 (41%), Positives = 316/493 (64%), Gaps = 15/493 (3%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGS-LSYATNVFSHIKR 93
+ C ELK+IH +++K+ +Q D ++ IT+ L FC S S L YA VF R
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQ--DSYA-ITKFLSFCISSTSSDFLPYAQIVFDGFDR 77
Query: 94 SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG 153
D + +N+MIR +C + L LY++MLC+ + TFP LLK C+
Sbjct: 78 PDTFLWNLMIRGFSCSDEPE------RSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAF 131
Query: 154 LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGY 213
++ Q+ K G +DV+ NS+I+ + G A +LFD + D VSWN++I GY
Sbjct: 132 EETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGY 191
Query: 214 LRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK 273
+++G +D+AL LFR+M ++N SW ++I+G+VQ +EAL+LF EMQ+S VE PD
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE----PDN 247
Query: 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333
+++A+ LSACA LGA++ GKW+H YL ++ + D V+G L+DMY KCG +E A VFK
Sbjct: 248 VSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKN 307
Query: 334 MPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393
+ KK AWTA+IS +A +G+G+EA F EM+ G++PN +TF +L+AC+++GLVE+G
Sbjct: 308 IKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEG 367
Query: 394 RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQ 453
+ F M Y ++P + HY C++D+L RAGL EA+R I+ MP++P+ +WGALL C+
Sbjct: 368 KLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACR 427
Query: 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513
+H N+ELGE++ + LI +DP + YV+ +++A ++D +TR LMKE+G+ K VPG
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK-VPG 486
Query: 514 CSSVEVDGVVHEF 526
CS++ ++G HEF
Sbjct: 487 CSTISLEGTTHEF 499
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/515 (39%), Positives = 318/515 (61%), Gaps = 17/515 (3%)
Query: 15 SPAKVSPPNK---ESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLF 71
+P +P ++ ES + + C NM EL++IH Q++K+ + S +LL
Sbjct: 2 APILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPAS---KLLA 58
Query: 72 FCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT 131
FCA SGSL+YA VF I R + + +N MIR +N + L LY ML
Sbjct: 59 FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGY------SNSKEPEEALLLYHHMLYH 112
Query: 132 GISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSA 191
+ + TFPFLLK C+ ++ ++K G +++ NS+++++ G + SA
Sbjct: 113 SVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSA 172
Query: 192 RMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAR 251
R+LFD++ RD VSWN+MI GY + G++++A ++F M +RNI SW S+I+G V G+ +
Sbjct: 173 RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPK 232
Query: 252 EALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311
EAL LF MQ++ + K D + + S L ACA LG +D GKW+H Y+++ ++ D ++G
Sbjct: 233 EALNLFHRMQTAGI----KLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 288
Query: 312 TALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVR 371
L+DMY KCG +E A VF++M +K WTAMIS +A++G G+EA + F +M+ GV
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 348
Query: 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431
PN +TF G+L+AC+H+GLV + + F M ++ +P + HY CM+D+L RAGL EAE
Sbjct: 349 PNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEE 408
Query: 432 LIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491
LI +MP++P+ +WGALL C +HGN+ELG+++ + LI +DP + Y++L ++A AG
Sbjct: 409 LIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGE 468
Query: 492 FDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEF 526
++ + R MKE+G+ K +PGCS + V+G HEF
Sbjct: 469 WNQAARVRRQMKEQGVSK-LPGCSVISVNGTAHEF 502
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/569 (40%), Positives = 336/569 (59%), Gaps = 51/569 (8%)
Query: 21 PPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHH-SLITRLLFFCALSVSG 79
P + KL + + CK+++ LK+IH IIK+ + + D ++ TRL CA S+
Sbjct: 30 PHDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKT--MPSPDAQLTISTRLSALCAQSLPI 87
Query: 80 SLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLT 139
YA ++ + ++ +L YN +IR A + ND+ G L +YKQML GI PD T
Sbjct: 88 DPRYALSLLAQLRTPNLPLYNAIIRGLA---TSNNDSIEG--LVVYKQMLSKGIVPDNYT 142
Query: 140 FPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS 199
PF+LK C + G V+GQ +K G+ DV+V N+++ ++ C + SAR +FD
Sbjct: 143 IPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSP 202
Query: 200 NRDVVSWNAMIIGY----------------------------------LRSGDLDVALDL 225
RD+VSW MI GY L+ GD + A +
Sbjct: 203 QRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKV 262
Query: 226 FRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY 285
F+ M +N+ SWNS+I+G Q G+ +E+L +F++MQ V KPD +T+ +VL++CA
Sbjct: 263 FQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGV----KPDDVTLVAVLNSCAN 318
Query: 286 LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAM 345
LG ++ GKWVH YL R+ + D IG ALVDMY KCG +++A VF+ M +KD ++TAM
Sbjct: 319 LGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAM 378
Query: 346 ISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYL 405
I A++G G +A D F EM G+ P+ VTFVG+L+AC+H GLVE+GR F M +Y
Sbjct: 379 IVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYN 438
Query: 406 VEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVA 465
+ P + HY CM+D+L RAGL +EAE IR+MP+EPD FV GALLG C++HG VELGE V
Sbjct: 439 LRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVM 498
Query: 466 QYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHE 525
+ + ++P YV + ++Y+ A R+ D K R MKER + K PGCSS+E+DGV+HE
Sbjct: 499 KKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEK-TPGCSSIELDGVIHE 557
Query: 526 FSM--KGSPKVVKEELVLILNGLSKIMKN 552
F K PK+ +E+ +L+ + +KN
Sbjct: 558 FQKGDKSHPKI--KEIYKLLDEIMSHLKN 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/515 (39%), Positives = 318/515 (61%), Gaps = 17/515 (3%)
Query: 15 SPAKVSPPNK---ESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLF 71
+P +P ++ ES + + C NM EL++IH Q++K+ + S +LL
Sbjct: 2 APILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPAS---KLLA 58
Query: 72 FCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT 131
FCA SGSL+YA VF I R + + +N MIR +N + L LY ML
Sbjct: 59 FCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGY------SNSKEPEEALLLYHHMLYH 112
Query: 132 GISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSA 191
+ + TFPFLLK C+ ++ ++K G +++ NS+++++ G + SA
Sbjct: 113 SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSA 172
Query: 192 RMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAR 251
R+LFD++ RD VSWN+MI GY + G++++A ++F M +RNI SW S+I+G V G+ +
Sbjct: 173 RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPK 232
Query: 252 EALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311
EAL LF MQ++ + K D + + S L ACA LG +D GKW+H Y+++ ++ D ++G
Sbjct: 233 EALNLFHRMQTAGI----KLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 288
Query: 312 TALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVR 371
L+DMY KCG +E A VF++M +K WTAMIS +A++G G+EA + F +M+ GV
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 348
Query: 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431
PN +TF G+L+AC+H+GLV + + F M ++ +P + HY CM+D+L RAGL EAE
Sbjct: 349 PNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEE 408
Query: 432 LIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491
LI +MP++P+ +WGALL C +HGN+ELG+++ + LI +DP + Y++L ++A AG
Sbjct: 409 LIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGE 468
Query: 492 FDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEF 526
++ + R MKE+G+ K +PGCS + V+G HEF
Sbjct: 469 WNQAARVRRQMKEQGVSK-LPGCSVISVNGTAHEF 502
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/509 (41%), Positives = 320/509 (62%), Gaps = 15/509 (2%)
Query: 19 VSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVS 78
V P S ++ N C ELK+IH +++K+ +Q D ++ IT+ L C S S
Sbjct: 34 VGPLLSGSCYCMMPNTETRCSKQEELKQIHARMLKTGLIQ--DSYA-ITKFLSCCISSTS 90
Query: 79 GS-LSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC 137
L YA VF R D + +N+MIR +C + L LY++MLC +
Sbjct: 91 SDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPE------RSLLLYQRMLCCSAPHNA 144
Query: 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDE 197
TFP LLK C+ ++ Q+ K G +DV+ NS+I+ + A G A +LFD
Sbjct: 145 YTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDR 204
Query: 198 MSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELF 257
+ D VSWN++I GY ++G +D+AL LFR+M ++N SW ++I+G+VQ G +EAL+LF
Sbjct: 205 IPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLF 264
Query: 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317
EMQ+S VE PD +++A+ LSACA LGA++ GKW+H YL ++ + D V+G L+DM
Sbjct: 265 HEMQNSDVE----PDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDM 320
Query: 318 YGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTF 377
Y KCG + A VFK + +K AWTA+IS +A +G+G+EA F EM+ G++PN +TF
Sbjct: 321 YAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITF 380
Query: 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMP 437
+L+AC+++GLVE+G+ F M Y ++P + HY C++D+LSRAGL EA+R I+ MP
Sbjct: 381 TTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMP 440
Query: 438 MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497
++P+ +WGALL C++H N+ELGE++ + LI +DP + YV+ +++A ++D +
Sbjct: 441 LKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAE 500
Query: 498 TRNLMKERGIRKEVPGCSSVEVDGVVHEF 526
TR LMKE+G+ K VPGCS++ ++G HEF
Sbjct: 501 TRRLMKEQGVAK-VPGCSTISLEGTTHEF 528
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/540 (40%), Positives = 323/540 (59%), Gaps = 16/540 (2%)
Query: 18 KVSPPNKESTKL--ILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCAL 75
+ SPP+ S K + +D C M ELK+ H+QII+ ND + R++ FCA+
Sbjct: 8 QASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADND---AMGRVIKFCAI 64
Query: 76 SVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP 135
S SG L+YA VF I D Y YN + R N C+ +Y +ML +SP
Sbjct: 65 SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARN------CIFMYSRMLHKSVSP 118
Query: 136 DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLF 195
+ T+P L++ C G ++ V+KFG D F N++I +++ + AR +F
Sbjct: 119 NKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVF 178
Query: 196 DEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALE 255
D M RDVVSW ++I GY + G +D A ++F M +RN SWN++I +VQ R EA
Sbjct: 179 DNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFA 238
Query: 256 LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALV 315
LF M+ E V DK AS+LSAC LGA++ GKW+HGY+ +SG++ D + T ++
Sbjct: 239 LFDRMRL----ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVI 294
Query: 316 DMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV 375
DMY KCGC+E+A VF E+P+K +W MI A++G G+ A + F+EME E V P+ +
Sbjct: 295 DMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGI 354
Query: 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435
TFV +LSACAHSGLVE+G+ F M V ++P + H+ CM+D+L RAGL EA +LI
Sbjct: 355 TFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE 414
Query: 436 MPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495
MP+ PD V GAL+G C++HGN ELGE++ + +I+L+P N YV L ++YA AGR++DV
Sbjct: 415 MPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDV 474
Query: 496 KKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
K R LM +RG++K PG S +E + V EF G +E+ L+ + + +++ G+
Sbjct: 475 AKVRKLMNDRGVKK-APGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGY 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/536 (41%), Positives = 330/536 (61%), Gaps = 15/536 (2%)
Query: 17 AKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALS 76
A V +S++ +L + +D+C M +K+I + + S L D + R++ FCA+S
Sbjct: 3 ASVGSKYLKSSRRVL-SLLDQCVTMAHIKQIQSHLTVSGTL--FDPFA-AGRIISFCAVS 58
Query: 77 VSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPD 136
G +S+A +F + R + +N M+RA T+ L LYK ML TG P+
Sbjct: 59 AQGDISHAYLLFLSLPRRTSFIWNTMLRAF------TDKKEPATVLSLYKYMLSTGFLPN 112
Query: 137 CLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFD 196
TF FLL+ C + D G ++ Q V+ G FVQN ++ L+ +C + SAR LFD
Sbjct: 113 NYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFD 172
Query: 197 EMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALEL 256
NRDVV+W A+I GY +SG + VA LF M ++N SW+++ITG+ Q G REALEL
Sbjct: 173 GSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALEL 232
Query: 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVD 316
F +MQ + +P+ I L+ACA+LGA+D G+W+H Y+ R+ + D ++GTAL+D
Sbjct: 233 FNDMQIAGF----RPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALID 288
Query: 317 MYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376
MY KCGCVE A VF EM +D A+T++IS A +G+ A + F M+ EGV PN VT
Sbjct: 289 MYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVT 348
Query: 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436
F+ LLSAC+ GLVE+G F M ++Y +EP V HY C++D+L RAG+ +A+R++R M
Sbjct: 349 FICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREM 408
Query: 437 PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVK 496
P+EPD +V GALL C++HG+VELG++ + L + + +V L +MYA A +++DV
Sbjct: 409 PLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVA 468
Query: 497 KTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKN 552
K R M+E+ ++K VPGCS +EVDG V EF V +E+VL+L G+ K +K+
Sbjct: 469 KVRKGMEEKKVKK-VPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGIDKHLKS 523
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 569 | ||||||
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.861 | 0.790 | 0.414 | 1.8e-110 | |
| TAIR|locus:2045580 | 559 | AT2G42920 [Arabidopsis thalian | 0.933 | 0.949 | 0.398 | 2.3e-101 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.924 | 0.814 | 0.375 | 3.4e-100 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.826 | 0.820 | 0.414 | 3.1e-99 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.813 | 0.679 | 0.413 | 5.9e-96 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.852 | 0.779 | 0.359 | 6.5e-90 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.866 | 0.923 | 0.354 | 1.1e-89 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.887 | 0.799 | 0.358 | 4.6e-89 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.833 | 0.894 | 0.380 | 1.8e-87 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.910 | 0.701 | 0.335 | 3.7e-87 |
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 210/507 (41%), Positives = 324/507 (63%)
Query: 33 NAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGS-LSYATNVFSHI 91
+ + C ELK+IH +++K+ +Q D ++ IT+ L FC S S L YA VF
Sbjct: 19 SCLQRCSKQEELKQIHARMLKTGLMQ--DSYA-ITKFLSFCISSTSSDFLPYAQIVFDGF 75
Query: 92 KRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRL 151
R D + +N+MIR +C S E + L LY++MLC+ + TFP LLK C+
Sbjct: 76 DRPDTFLWNLMIRGFSC-SDEPE-----RSLLLYQRMLCSSAPHNAYTFPSLLKACSNLS 129
Query: 152 DGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMII 211
++ Q+ K G +DV+ NS+I+ + G A +LFD + D VSWN++I
Sbjct: 130 AFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIK 189
Query: 212 GYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP 271
GY+++G +D+AL LFR+M ++N SW ++I+G+VQ +EAL+LF EMQ+S VE P
Sbjct: 190 GYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE----P 245
Query: 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVF 331
D +++A+ LSACA LGA++ GKW+H YL ++ + D V+G L+DMY KCG +E A VF
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305
Query: 332 KEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE 391
K + KK AWTA+IS +A +G+G+EA F EM+ G++PN +TF +L+AC+++GLVE
Sbjct: 306 KNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365
Query: 392 KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGG 451
+G+ F M Y ++P + HY C++D+L RAGL EA+R I+ MP++P+ +WGALL
Sbjct: 366 EGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKA 425
Query: 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEV 511
C++H N+ELGE++ + LI +DP + YV+ +++A ++D +TR LMKE+G+ K V
Sbjct: 426 CRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK-V 484
Query: 512 PGCSSVEVDGVVHEFSM--KGSPKVVK 536
PGCS++ ++G HEF + P++ K
Sbjct: 485 PGCSTISLEGTTHEFLAGDRSHPEIEK 511
|
|
| TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 220/552 (39%), Positives = 334/552 (60%)
Query: 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLI 66
++S+S + PA S + S LR +C MRELK+IH +IK+ + S
Sbjct: 5 ILSFSGVTVPAMPSSGSL-SGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTAS-- 61
Query: 67 TRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYK 126
R+L FC S S ++YA VF+ I + + +N +IR + +SS + ++
Sbjct: 62 -RVLAFCCASPS-DMNYAYLVFTRINHKNPFVWNTIIRGFS-RSSFPE-----MAISIFI 113
Query: 127 QMLCTG--ISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMA 184
MLC+ + P LT+P + K + G ++G V+K G+ DD F++N+++ +++
Sbjct: 114 DMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVT 173
Query: 185 CGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGF 244
CG + A +F M DVV+WN+MI+G+ + G +D A +LF M +RN SWNS+I+GF
Sbjct: 174 CGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGF 233
Query: 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304
V+ GR ++AL++F+EMQ E+ VKPD T+ S+L+ACAYLGA + G+W+H Y+ R+
Sbjct: 234 VRNGRFKDALDMFREMQ----EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRF 289
Query: 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFRE 364
+ + ++ TAL+DMY KCGC+E VF+ PKK W +MI A NG+ + A D F E
Sbjct: 290 ELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSE 349
Query: 365 MEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424
+E G+ P+ V+F+G+L+ACAHSG V + F +M+ Y++EP + HY M+++L AG
Sbjct: 350 LERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAG 409
Query: 425 LFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484
L EAE LI++MP+E D +W +LL C+ GNVE+ ++ A+ L LDP YV L +
Sbjct: 410 LLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSN 469
Query: 485 MYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEF-SMKGS-PKVVK-EELVL 541
YA G F++ + R LMKER + KEV GCSS+EVD VHEF S G+ PK + L+
Sbjct: 470 AYASYGLFEEAVEQRLLMKERQMEKEV-GCSSIEVDFEVHEFISCGGTHPKSAEIYSLLD 528
Query: 542 ILNGLSKIMKNG 553
ILN +K+G
Sbjct: 529 ILNWDVSTIKSG 540
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 210/559 (37%), Positives = 343/559 (61%)
Query: 14 NSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFC 73
NSPA SP + S+ L I+ C+ +R+L +IH IKS Q D + +L FC
Sbjct: 13 NSPAS-SPASHPSS---LFPQINNCRTIRDLSQIHAVFIKSG--QMRDTLAA-AEILRFC 65
Query: 74 ALSV--SGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT 131
A S L YA +F+ + + + +++N +IR SE+++ + + L+ +M+
Sbjct: 66 ATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRG----FSESDEDKALIAITLFYEMMSD 121
Query: 132 G-ISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTS 190
+ P+ TFP +LK C K G ++G +K+G D FV ++++ +++ CGF+
Sbjct: 122 EFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKD 181
Query: 191 ARMLFDE---------MSNR-----DVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFS 236
AR+LF + M++R ++V WN MI GY+R GD A LF +M++R++ S
Sbjct: 182 ARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVS 241
Query: 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296
WN++I+G+ G ++A+E+F+EM+ + +P+ +T+ SVL A + LG+++ G+W+H
Sbjct: 242 WNTMISGYSLNGFFKDAVEVFREMKKGDI----RPNYVTLVSVLPAISRLGSLELGEWLH 297
Query: 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGK 356
Y SG+ D V+G+AL+DMY KCG +E+A VF+ +P+++ + W+AMI+ FA++G
Sbjct: 298 LYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAG 357
Query: 357 EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416
+A D F +M GVRP+ V ++ LL+AC+H GLVE+GR F M V +EP + HY CM
Sbjct: 358 DAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCM 417
Query: 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476
+D+L R+GL EAE I +MP++PD +W ALLG C+M GNVE+G++VA L+D+ P +
Sbjct: 418 VDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDS 477
Query: 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVK 536
YV L +MYA G + +V + R MKE+ IRK+ PGCS +++DGV+HEF ++
Sbjct: 478 GAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD-PGCSLIDIDGVLHEFVVEDDSHPKA 536
Query: 537 EELVLILNGLSKIMKNGGF 555
+E+ +L +S ++ G+
Sbjct: 537 KEINSMLVEISDKLRLAGY 555
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 199/480 (41%), Positives = 305/480 (63%)
Query: 81 LSYATNVFSHIKRSDL--YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138
++YA +F HI+ L + +NI+IRA S HS + +Y +M +SPD
Sbjct: 8 IAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQ-RHSP--ISVYLRMRNHRVSPDFH 63
Query: 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198
TFPFLL L +G + Q++ FG+ D FV+ S+++++ +CG + SA+ +FD+
Sbjct: 64 TFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDS 123
Query: 199 SNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258
++D+ +WN+++ Y ++G +D A LF M +RN+ SW+ +I G+V G+ +EAL+LF+
Sbjct: 124 GSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFR 183
Query: 259 EMQSSSVEE-MVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317
EMQ E V+P++ T+++VLSAC LGA++ GKWVH Y+ + ++ D+V+GTAL+DM
Sbjct: 184 EMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDM 243
Query: 318 YGKCGCVERAYGVFKEM-PKKDTLAWTAMISVFALNGYGKEAFDTFREME-AEGVRPNHV 375
Y KCG +ERA VF + KKD A++AMI A+ G E F F EM ++ + PN V
Sbjct: 244 YAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSV 303
Query: 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435
TFVG+L AC H GL+ +G+ F MM + + P + HY CM+D+ R+GL EAE I S
Sbjct: 304 TFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIAS 363
Query: 436 MPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495
MPMEPDV +WG+LL G +M G+++ E + LI+LDP+N YV L ++YAK GR+ +V
Sbjct: 364 MPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEV 423
Query: 496 KKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
K R+ M+ +GI K VPGCS VEV+GVVHEF + + E + +L+ + + ++ G+
Sbjct: 424 KCIRHEMEVKGINK-VPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGY 482
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 196/474 (41%), Positives = 288/474 (60%)
Query: 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138
G + A VF DL ++N +I K E K + +YK M G+ PD +
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYK-KIGEAE-----KAIYVYKLMESEGVKPDDV 258
Query: 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198
T L+ C+ D G Y V + G+ + + N+++ +F CG + AR +FD +
Sbjct: 259 TMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNL 318
Query: 199 SNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258
R +VSW MI GY R G LDV+ LF M+++++ WN++I G VQ R ++AL LFQ
Sbjct: 319 EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQ 378
Query: 259 EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318
EMQ+S+ KPD+IT+ LSAC+ LGA+D G W+H Y+ + L +V +GT+LVDMY
Sbjct: 379 EMQTSNT----KPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMY 434
Query: 319 GKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFV 378
KCG + A VF + +++L +TA+I AL+G A F EM G+ P+ +TF+
Sbjct: 435 AKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFI 494
Query: 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM 438
GLLSAC H G+++ GR F M+ + + P + HY+ M+D+L RAGL EA+RL+ SMPM
Sbjct: 495 GLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPM 554
Query: 439 EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT 498
E D VWGALL GC+MHGNVELGEK A+ L++LDP + YV L MY +A ++D K+
Sbjct: 555 EADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRA 614
Query: 499 RNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKN 552
R +M ERG+ K +PGCSS+EV+G+V EF ++ + E++ L+ L + M++
Sbjct: 615 RRMMNERGVEK-IPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRS 667
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 181/504 (35%), Positives = 314/504 (62%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCA-----LSVSGSLSYATNVFS 89
+ C + +LK IH ++++ + +D + +RLL C + L YA +FS
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLI--SDVF-VASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 90 HIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK 149
I+ +L+ +N++IR C S+ + K Y QML + I PD +TFPFL+K ++
Sbjct: 76 QIQNPNLFVFNLLIR---CFSTGAEPS---KAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 150 RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAM 209
LVG + Q+V+FG +DV+V+NS++ ++ CGF+ +A +F +M RDVVSW +M
Sbjct: 130 MECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189
Query: 210 IIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMV 269
+ GY + G ++ A ++F M RN+F+W+ +I G+ + +A++LF+ M+ E V
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMK----REGV 245
Query: 270 KPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYG 329
++ + SV+S+CA+LGA++ G+ + Y+ +S + ++++GTALVDM+ +CG +E+A
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIH 305
Query: 330 VFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389
VF+ +P+ D+L+W+++I A++G+ +A F +M + G P VTF +LSAC+H GL
Sbjct: 306 VFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGL 365
Query: 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALL 449
VEKG + M+ + +EP + HY C++D+L RAG +EAE I M ++P+ + GALL
Sbjct: 366 VEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALL 425
Query: 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRK 509
G C+++ N E+ E+V LI + P + +YV L ++YA AG++D ++ R++MKE+ ++K
Sbjct: 426 GACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKK 485
Query: 510 EVPGCSSVEVDGVVHEFSMKGSPK 533
PG S +E+DG +++F+M K
Sbjct: 486 P-PGWSLIEIDGKINKFTMGDDQK 508
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 181/510 (35%), Positives = 301/510 (59%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS 94
+ K+ E K+I+ II Q++ ++T+++ FC + + YAT +F+ +
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSS---FMVTKMVDFCD-KIE-DMDYATRLFNQVSNP 71
Query: 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGIS-PDCLTFPFLLKECTKRLDG 153
+++ YN +IRA T+++ +++YKQ+L PD TFPF+ K C
Sbjct: 72 NVFLYNSIIRAY------THNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSC 125
Query: 154 LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGY 213
+G V+G + KFG V +N++I ++M + A +FDEM RDV+SWN+++ GY
Sbjct: 126 YLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGY 185
Query: 214 LRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK 273
R G + A LF M + I SW ++I+G+ G EA++ F+EMQ + +E PD+
Sbjct: 186 ARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIE----PDE 241
Query: 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333
I++ SVL +CA LG+++ GKW+H Y R G + AL++MY KCG + +A +F +
Sbjct: 242 ISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQ 301
Query: 334 MPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393
M KD ++W+ MIS +A +G A +TF EM+ V+PN +TF+GLLSAC+H G+ ++G
Sbjct: 302 MEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEG 361
Query: 394 RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQ 453
F MMR Y +EP + HY C+ID+L+RAG A + ++MPM+PD +WG+LL C+
Sbjct: 362 LRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCR 421
Query: 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513
GN+++ +L++L+P + YV L ++YA G+++DV + R +++ ++K PG
Sbjct: 422 TPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK-TPG 480
Query: 514 CSSVEVDGVVHEFSMKGSPKVVKEELVLIL 543
S +EV+ +V EF + K E+ ++L
Sbjct: 481 GSLIEVNNIVQEFVSGDNSKPFWTEISIVL 510
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 187/522 (35%), Positives = 308/522 (59%)
Query: 35 IDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS 94
ID+ +++ E+ +IH I++ L + + ++ L A + G + ++ +F
Sbjct: 36 IDKSQSVDEVLQIHAAILRHNLL-LHPRYPVLN-LKLHRAYASHGKIRHSLALFHQTIDP 93
Query: 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGL 154
DL+ + I N + D + LY Q+L + I+P+ TF LLK C+ +
Sbjct: 94 DLFLFTAAI--NTASINGLKD----QAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS--- 144
Query: 155 VGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYL 214
G ++ V+KFG+ D +V ++ ++ G V SA+ +FD M R +VS AMI Y
Sbjct: 145 -GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYA 203
Query: 215 RSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI 274
+ G+++ A LF M +R+I SWN +I G+ Q G +AL LFQ++ + E KPD+I
Sbjct: 204 KQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLA---EGKPKPDEI 260
Query: 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEM 334
T+ + LSAC+ +GA++ G+W+H +++ S + +V + T L+DMY KCG +E A VF +
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320
Query: 335 PKKDTLAWTAMISVFALNGYGKEAFDTFREMEA-EGVRPNHVTFVGLLSACAHSGLVEKG 393
P+KD +AW AMI+ +A++GY ++A F EM+ G++P +TF+G L ACAH+GLV +G
Sbjct: 321 PRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEG 380
Query: 394 RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQ 453
F M Y ++P + HY C++ +L RAG A I++M M+ D +W ++LG C+
Sbjct: 381 IRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCK 440
Query: 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513
+HG+ LG+++A+YLI L+ N YV L ++YA G ++ V K RNLMKE+GI KE PG
Sbjct: 441 LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKE-PG 499
Query: 514 CSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
S++E++ VHEF +E+ +L +S+ +K+ G+
Sbjct: 500 ISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGY 541
|
|
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 186/489 (38%), Positives = 293/489 (59%)
Query: 40 NMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTY 99
N++ LK+ H +I + + N + + + + C S +G L YA +VF+H + Y +
Sbjct: 27 NLKTLKQSHCYMIITGLNRDNLN---VAKFIEAC--SNAGHLRYAYSVFTHQPCPNTYLH 81
Query: 100 NIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASV 159
N MIRA + E N HS + +Y+++ PD TFPF+LK + D G +
Sbjct: 82 NTMIRALSLLD-EPN-AHS-IAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQI 138
Query: 160 YGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDL 219
+GQVV FG V V +I ++ +CG + AR +FDEM +DV WNA++ GY + G++
Sbjct: 139 HGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEM 198
Query: 220 DVALDLFRRMK--KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIA 277
D A L M RN SW +I+G+ + GRA EA+E+FQ M +VE PD++T+
Sbjct: 199 DEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVE----PDEVTLL 254
Query: 278 SVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK 337
+VLSACA LG+++ G+ + Y+ G++ V + A++DMY K G + +A VF+ + ++
Sbjct: 255 AVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNER 314
Query: 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCF 397
+ + WT +I+ A +G+G EA F M GVRPN VTF+ +LSAC+H G V+ G+ F
Sbjct: 315 NVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLF 374
Query: 398 VMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGN 457
MR Y + P++ HY CMID+L RAG EA+ +I+SMP + + +WG+LL +H +
Sbjct: 375 NSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHD 434
Query: 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSV 517
+ELGE+ LI L+P N Y+ L ++Y+ GR+D+ + RN+MK G++K + G SS+
Sbjct: 435 LELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKK-MAGESSI 493
Query: 518 EVDGVVHEF 526
EV+ V++F
Sbjct: 494 EVENRVYKF 502
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 179/534 (33%), Positives = 306/534 (57%)
Query: 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSL 81
PNK + +++ A E ++ + +H +KS +D + L C S G L
Sbjct: 129 PNKYTFPFLIKAAA-EVSSLSLGQSLHGMAVKSAV--GSD--VFVANSLIHCYFSC-GDL 182
Query: 82 SYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFP 141
A VF+ IK D+ ++N MI K S K L+L+K+M + +T
Sbjct: 183 DSACKVFTTIKEKDVVSWNSMINGFVQKGSPD------KALELFKKMESEDVKASHVTMV 236
Query: 142 FLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR 201
+L C K + G V + + V ++ + N+++ ++ CG + A+ LFD M +
Sbjct: 237 GVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 296
Query: 202 DVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQ 261
D V+W M+ GY S D + A ++ M +++I +WN++I+ + Q G+ EAL +F E+Q
Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQ 356
Query: 262 SSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC 321
+++ +K ++IT+ S LSACA +GA++ G+W+H Y+++ G+ + + +AL+ MY KC
Sbjct: 357 ---LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413
Query: 322 GCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381
G +E++ VF + K+D W+AMI A++G G EA D F +M+ V+PN VTF +
Sbjct: 414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473
Query: 382 SACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPD 441
AC+H+GLV++ F M Y + P HYAC++D+L R+G +A + I +MP+ P
Sbjct: 474 CACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPS 533
Query: 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501
VWGALLG C++H N+ L E L++L+P N +V L ++YAK G++++V + R
Sbjct: 534 TSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKH 593
Query: 502 MKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
M+ G++KE PGCSS+E+DG++HEF + + E++ L+ + + +K+ G+
Sbjct: 594 MRVTGLKKE-PGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGY 646
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 569 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-94 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-90 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-59 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-32 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = 1e-94
Identities = 160/479 (33%), Positives = 250/479 (52%), Gaps = 48/479 (10%)
Query: 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138
GS A VFS ++ D ++ MI S + K L+ Y M +SPD +
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMI------SGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 139 TFPFLLKECTK--RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFD 196
T +L C LD VG ++ + G+ V V N++I +
Sbjct: 391 TIASVLSACACLGDLD--VGVKLHELAERKGLISYVVVANALIEM--------------- 433
Query: 197 EMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALEL 256
Y + +D AL++F + ++++ SW SII G R EAL
Sbjct: 434 ----------------YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477
Query: 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVD 316
F++M + +KP+ +T+ + LSACA +GA+ GK +H ++ R+G+ D + AL+D
Sbjct: 478 FRQMLLT-----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532
Query: 317 MYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376
+Y +CG + A+ F +KD ++W +++ + +G G A + F M GV P+ VT
Sbjct: 533 LYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436
F+ LL AC+ SG+V +G F M Y + P++ HYAC++D+L RAG +EA I M
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 437 PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVK 496
P+ PD VWGALL C++H +VELGE AQ++ +LDP + +Y+ LC++YA AG++D+V
Sbjct: 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711
Query: 497 KTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555
+ R M+E G+ + PGCS VEV G VH F +E+ +L G + MK G
Sbjct: 712 RVRKTMRENGLTVD-PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 3e-90
Identities = 144/448 (32%), Positives = 222/448 (49%), Gaps = 42/448 (9%)
Query: 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138
G L A +F + +L ++ +I + + + L+++M G +
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTII------GGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198
TF +L+ G ++ V+K GV D FV ++I ++ CG + AR +FD M
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
Query: 199 SNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258
+ V+WN+M+ GY G + EAL L+
Sbjct: 286 PEKTTVAWNSMLAGY-------------------------------ALHGYSEEALCLYY 314
Query: 259 EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318
EM+ S V D+ T + ++ + L ++H K H L R+G D+V TALVD+Y
Sbjct: 315 EMRDSGV----SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370
Query: 319 GKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFV 378
K G +E A VF MP+K+ ++W A+I+ + +G G +A + F M AEGV PNHVTF+
Sbjct: 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430
Query: 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM 438
+LSAC +SGL E+G F M + ++P HYACMI++L R GL EA +IR P
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490
Query: 439 EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT 498
+P V +W ALL C++H N+ELG A+ L + P YV L ++Y +GR + K
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550
Query: 499 RNLMKERGIRKEVPGCSSVEVDGVVHEF 526
+K +G+ P C+ +EV H F
Sbjct: 551 VETLKRKGLSM-HPACTWIEVKKQDHSF 577
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (535), Expect = 8e-59
Identities = 142/472 (30%), Positives = 219/472 (46%), Gaps = 67/472 (14%)
Query: 12 LLNSPAKVSPPNKESTKLILRNAIDECKNMRELKE---IHTQIIKSPCLQTNDHHSLITR 68
LL S ++ P E + L C+ R ++E + ++ + S H SL R
Sbjct: 73 LLESMQELRVPVDEDAYVAL---FRLCEWKRAVEEGSRVCSRALSS-------HPSLGVR 122
Query: 69 L--LFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYK 126
L G L +A VF + DL+++N+++ A K+ ++ L LY
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA-KAGYFDEA-----LCLYH 176
Query: 127 QMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACG 186
+ML G+ PD TFP +L+ C D G V+ VV+FG DV V N++I++++ CG
Sbjct: 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 187 FVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQ 246
V SAR++FD M RD +SWNAMI GY +G+ L+LF M+
Sbjct: 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR---------------- 280
Query: 247 GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDC 306
E V PD +TI SV+SAC LG G+ +HGY+ ++G
Sbjct: 281 -------------------ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366
DV + +L+ MY G A VF M KD ++WTAMIS + NG +A +T+ ME
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 367 AEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYAC----MIDILSR 422
+ V P+ +T +LSACA G ++ G + H + Y +I++ S+
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYSK 436
Query: 423 AGLFSEAERLIRSMPMEPDVFVWGALLGG-CQMHGNVELGEKVAQYLIDLDP 473
+A + ++P E DV W +++ G + E Q L+ L P
Sbjct: 437 CKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-40
Identities = 93/316 (29%), Positives = 147/316 (46%), Gaps = 49/316 (15%)
Query: 157 ASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRS 216
+VY V G D ++ N V+ + + CG + AR LFDEM
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----------------- 185
Query: 217 GDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITI 276
+RN+ SW +II G V G REA LF+EM E+ + T
Sbjct: 186 --------------ERNLASWGTIIGGLVDAGNYREAFALFREM----WEDGSDAEPRTF 227
Query: 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK 336
+L A A LG+ G+ +H + ++G+ D + AL+DMY KCG +E A VF MP+
Sbjct: 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
Query: 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396
K T+AW +M++ +AL+GY +EA + EM GV + TF ++ + L+E +
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK-- 345
Query: 397 FVMMRHVYLV----EPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGC 452
H L+ + ++D+ S+ G +A + MP + ++ W AL+ G
Sbjct: 346 ---QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGY 401
Query: 453 QMHGN----VELGEKV 464
HG VE+ E++
Sbjct: 402 GNHGRGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-32
Identities = 94/339 (27%), Positives = 148/339 (43%), Gaps = 45/339 (13%)
Query: 122 LKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISL 181
LKL + M + D + L + C + G+ V + + V + N+++S+
Sbjct: 71 LKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130
Query: 182 FMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSII 241
F+ G + A +F +M RD+ SWN ++ GY ++G D AL L+ RM W
Sbjct: 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML------WAG-- 182
Query: 242 TGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRR 301
V+PD T VL C + + G+ VH ++ R
Sbjct: 183 ---------------------------VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215
Query: 302 SGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDT 361
G + DV + AL+ MY KCG V A VF MP++D ++W AMIS + NG E +
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275
Query: 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP----HVYHYACMI 417
F M V P+ +T ++SAC G GR H Y+V+ V +I
Sbjct: 276 FFTMRELSVDPDLMTITSVISACELLGDERLGR-----EMHGYVVKTGFAVDVSVCNSLI 330
Query: 418 DILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHG 456
+ G + EAE++ M + D W A++ G + +G
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 1e-21
Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 49/307 (15%)
Query: 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLR 300
I V GR REALELF+ +++ + T +++ AC L +I K V+ ++
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTL---PASTYDALVEACIALKSIRCVKAVYWHVE 150
Query: 301 RSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFD 360
SG + D + ++ M+ KCG + A +F EMP+++ +W +I G +EAF
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210
Query: 361 TFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVY---HYAC-M 416
FREM +G TFV +L A A G G+ H +++ V +C +
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ-----QLHCCVLKTGVVGDTFVSCAL 265
Query: 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVE-----------LGEKVA 465
ID+ S+ G +A + MP E W ++L G +HG E G +
Sbjct: 266 IDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 466 QY-------------LIDLDPLNHAFYVN------------LCDMYAKAGRFDDVKKTRN 500
Q+ L++ HA + L D+Y+K GR +D + +
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 501 LMKERGI 507
M + +
Sbjct: 385 RMPRKNL 391
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 9e-19
Identities = 76/343 (22%), Positives = 159/343 (46%), Gaps = 22/343 (6%)
Query: 139 TFPFLLKEC--TKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFD 196
TF L+ C ++ +DG + V V + G+ D + ++IS G V + +F
Sbjct: 439 TFNMLMSVCASSQDIDGALR--VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496
Query: 197 EMSNR----DVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNI----FSWNSIITGFVQGG 248
EM N +V ++ A+I G R+G + A + M+ +N+ +N++I+ Q G
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556
Query: 249 RAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDV 308
A ++ EM++ + + PD IT+ +++ ACA G +D K V+ + +
Sbjct: 557 AVDRAFDVLAEMKAET--HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 309 VIGTALVDMYGKCGCVERAYGVFKEMPKK----DTLAWTAMISVFALNGYGKEAFDTFRE 364
+ T V+ + G + A ++ +M KK D + ++A++ V G +AF+ ++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 365 MEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424
+G++ V++ L+ AC+++ +K + ++ + L P V +I L
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGN 733
Query: 425 LFSEA-ERL--IRSMPMEPDVFVWGALLGGCQMHGNVELGEKV 464
+A E L ++ + + P+ + LL + + ++G +
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-16
Identities = 67/315 (21%), Positives = 125/315 (39%), Gaps = 60/315 (19%)
Query: 238 NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHG 297
NS + G+ +AL+L + MQ E V D+ ++ C + A++ G V
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQ----ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS 110
Query: 298 YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKE 357
S V +G A++ M+ + G + A+ VF +MP++D +W ++ +A GY E
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170
Query: 358 AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV--YHYAC 415
A + M GVRP+ TF +L C G+ + R V+ HV + +
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCG--GIPD-----LARGREVHA---HVVRFGFEL 220
Query: 416 MIDILS-------RAGLFSEAERLIRSMPMEPDVFVWGALLGG----------------- 451
+D+++ + G A + MP D W A++ G
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTM 279
Query: 452 ------------------CQMHGNVELGEKVAQYLIDLD-PLNHAFYVNLCDMYAKAGRF 492
C++ G+ LG ++ Y++ ++ + +L MY G +
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 493 DDVKKTRNLMKERGI 507
+ +K + M+ +
Sbjct: 340 GEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-10
Identities = 78/312 (25%), Positives = 126/312 (40%), Gaps = 65/312 (20%)
Query: 214 LRSGDLDVALDLFRRMKKRNIFSWNSII-TGFVQGGRAREALELFQEMQSSSVEEMVKPD 272
LR G + +DL M+KR + + I F + + + A V+E +
Sbjct: 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA-----------VKEAFRFA 429
Query: 273 KI-------TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325
K+ T ++S CA ID V ++ +GL D + T L+ K G V+
Sbjct: 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 326 RAYGVFKEM------PKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVG 379
+ VF EM T + A+I A G +AF + M ++ V+P+ V F
Sbjct: 490 AMFEVFHEMVNAGVEANVHT--FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPME 439
L+SAC SG V++ D+L+ AE + P++
Sbjct: 548 LISACGQSGAVDRA-----------------------FDVLAEMK----AE----THPID 576
Query: 440 PDVFVWGALLGGCQMHGNVELGEKVAQ----YLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495
PD GAL+ C G V+ ++V Q Y I P + VN C ++ G +D
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC---SQKGDWDFA 633
Query: 496 KKTRNLMKERGI 507
+ MK++G+
Sbjct: 634 LSIYDDMKKKGV 645
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 4e-10
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 202 DVVSWNAMIIGYLRSGDLDVALDLFRRMKKR----NIFSWNSIITGF 244
DVV++N +I GY + G ++ AL LF MKKR N+++++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386
D + + +I + G +EA F EM+ G++PN T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 72/313 (23%), Positives = 123/313 (39%), Gaps = 72/313 (23%)
Query: 231 KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAID 290
KR + ++ GR ++ ++L ++M+ + +M DKI A AC A
Sbjct: 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDM---DKIYHAKFFKACKKQRA-- 421
Query: 291 HGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFA 350
V+ A+ K + + ++SV A
Sbjct: 422 ---------------------------------VKEAFRFAKLIRNPTLSTFNMLMSVCA 448
Query: 351 LNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV 410
+ A R ++ G++ + + L+S CA SG V+ F M VE +V
Sbjct: 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANV 507
Query: 411 YHYACMIDILSRAGLFSEA---ERLIRSMPMEPDVFVWGALLGGCQMHGNVE-----LGE 462
+ + +ID +RAG ++A ++RS ++PD V+ AL+ C G V+ L E
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
Query: 463 KVAQ-YLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDG 521
A+ + ID D H L A AG+ D K EV
Sbjct: 568 MKAETHPIDPD---HITVGALMKACANAGQVDRAK---------------------EVYQ 603
Query: 522 VVHEFSMKGSPKV 534
++HE+++KG+P+V
Sbjct: 604 MIHEYNIKGTPEV 616
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 4e-08
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 233 NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACA 284
++ ++N++I G+ + G+ EAL+LF EM+ +KP+ T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG----IKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 204 VSWNAMIIGYLRSGDLDVALDLFRRMKKRNI 234
V++N++I GY ++G L+ AL+LF+ MK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 204 VSWNAMIIGYLRSGDLDVALDLFRRMKKRNI 234
V++N +I G ++G ++ AL+LF+ MK+R I
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 235 FSWNSIITGFVQGGRAREALELFQEMQSSSV 265
++NS+I+G+ + G+ EALELF+EM+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVE 266
++N++I G + GR EALELF+EM+ +E
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 4e-04
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 202 DVVSWNAMIIGYLRSGDLDVALDLFRRMK 230
DVV++N +I G R+G +D A++L M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK 149
D+ TYN +I CK + + LKL+ +M GI P+ T+ L+ K
Sbjct: 2 DVVTYNTLIDG-YCKKGKVE-----EALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 171 DVFVQNSVISLFMACGFVTSARMLFDEMSNR----DVVSWNAMIIGY 213
DV N++I + G V A LF+EM R +V +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 341 AWTAMISVFALNGYGKEAFDTFREMEAEGV 370
+ ++IS + G +EA + F+EM+ +GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 231 KRNIFSWNSIITGFVQGGRAREALELFQEMQ 261
K ++ ++N++I G + GR EA+EL EM+
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 203 VVSWNAMIIGYLRSGDLDVALDLFRRMKKRNI 234
+ ++NA+++ ++GD D+AL + MK +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373
+ +I G +EA + F+EM+ G+ P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRP 372
+ A++ A G A EM+A G++P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 569 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.87 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.81 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.61 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.28 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.21 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.99 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.9 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.87 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.85 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.8 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.66 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.63 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.46 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.4 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.39 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.38 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.38 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.36 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.32 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.26 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.25 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.22 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.15 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.07 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.05 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.0 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.99 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.93 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.88 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.62 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.54 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.32 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.3 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.27 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.21 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.14 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.04 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.95 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.94 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.85 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.84 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.76 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.59 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.58 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.54 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.39 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.35 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.31 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.0 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.96 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.61 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.59 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.55 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.52 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.32 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.01 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.96 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.78 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.29 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.27 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.19 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.92 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.76 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.49 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.13 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.85 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.77 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.61 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.59 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.38 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.16 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.06 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.01 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.85 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.81 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.56 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.54 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.21 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.98 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.98 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.98 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.95 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.65 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.65 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.34 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.2 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.57 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.54 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.46 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.82 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.64 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.52 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.41 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.27 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 87.03 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.55 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.23 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.04 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.67 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.57 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.9 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.81 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.46 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.43 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.17 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.07 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.79 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.5 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.22 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.18 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.99 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.89 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.78 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 81.71 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 81.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 81.19 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.06 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.73 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.44 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.11 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-76 Score=634.47 Aligned_cols=545 Identities=32% Similarity=0.550 Sum_probs=484.2
Q ss_pred HHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHH
Q 038890 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATN 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~ 86 (569)
+.|..+++.|++.+..|+..++..++..+...+++..+.+++..+.+.|+.+++ .+++.|+.+|+++ |+++.|.+
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~n~Li~~y~k~--g~~~~A~~ 243 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV---DVVNALITMYVKC--GDVVSARL 243 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc---chHhHHHHHHhcC--CCHHHHHH
Confidence 445555555555555555555555555555555555555666666666666666 7889999999999 99999999
Q ss_pred HhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 038890 87 VFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKF 166 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 166 (569)
+|++|+.+|..+||++|.+|++.|++. +|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~------eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECL------EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHH------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------------
Q 038890 167 GVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--------------- 231 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 231 (569)
|+.||..+||+|+.+|+++|++++|.++|++|..||..+|++++.+|++.|++++|+++|++|.+
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 99999999999999999999999999999999998888888888888887777777777776621
Q ss_pred ------------------------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccc----------------------
Q 038890 232 ------------------------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSV---------------------- 265 (569)
Q Consensus 232 ------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------------------- 265 (569)
++..+|+.|+.+|++.|++++|.++|++|.+.+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 1223344445555555555555555555432110
Q ss_pred ----cCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhH
Q 038890 266 ----EEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLA 341 (569)
Q Consensus 266 ----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 341 (569)
..++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+
T Consensus 478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 124789999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILS 421 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (569)
|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 422 RAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
+.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++.+++|++...|..|++.|.+.|+|++|.++.+.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCcccccc
Q 038890 502 MKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRGLSM 564 (569)
Q Consensus 502 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 564 (569)
|++.|++++ |++||+++++.+|.|.+++.+||+.+++.+.++++.++|++.||+||+..+++
T Consensus 717 M~~~g~~k~-~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~ 778 (857)
T PLN03077 717 MRENGLTVD-PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD 778 (857)
T ss_pred HHHcCCCCC-CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc
Confidence 999999999 99999999999999999999999999999999999999999999999887653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-74 Score=599.08 Aligned_cols=522 Identities=28% Similarity=0.436 Sum_probs=505.0
Q ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC----CCCcccHH
Q 038890 26 STKLILRNAIDECKNMRELKEIHTQIIKSP-CLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK----RSDLYTYN 100 (569)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 100 (569)
.+...++..+...|++++|.++|+.+...+ ..++. .+|+.++..+++. ++++.|.+++..+. .||..+||
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~---~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPA---STYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 367888889999999999999999999865 56788 8999999999999 99999999999886 58999999
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVIS 180 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 180 (569)
.++.+|++.|+++ .|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.
T Consensus 163 ~Li~~y~k~g~~~------~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 163 RVLLMHVKCGMLI------DARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHhcCCCHH------HHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 9999999999999 99999999964 8999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
+|++.|..+.+.+++..+.+ +|..+|++++.+|++.|++++|.++|++|.++|+++||.++.+|++.|++++|+++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999887765 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK 336 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 336 (569)
|++|. ..|+.||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+++.|+++|++.|++++|.++|++|.+
T Consensus 313 f~~M~----~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 313 YYEMR----DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHH----HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
+|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 038890 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+++|++.|++++|.+++++|+..|+..+|++|+.+|...|+++.|..+++++.+.+|++...|..|+.+|.+.|++++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCccccccccc
Q 038890 497 KTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRGLSMEAQ 567 (569)
Q Consensus 497 ~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 567 (569)
++++.|.+.|+++. |+++|+++.+.++.|++++..||..+++.+.+.++..+|++.||+||+..+++|..
T Consensus 549 ~v~~~m~~~g~~k~-~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 549 KVVETLKRKGLSMH-PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HHHHHHHHcCCccC-CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 99999999999998 99999999999999999999999999999999999999999999999999888753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-65 Score=545.91 Aligned_cols=521 Identities=30% Similarity=0.456 Sum_probs=461.2
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT 85 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~ 85 (569)
.+.|..+++.|.+.+.+|+..++..++..+...+.+..+.+++..+.+.+..++. .+++.++..|+++ |+++.|.
T Consensus 67 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~n~li~~~~~~--g~~~~A~ 141 (857)
T PLN03077 67 LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV---RLGNAMLSMFVRF--GELVHAW 141 (857)
T ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc---hHHHHHHHHHHhC--CChHHHH
Confidence 4678889999988888999988888888888889999999999999999998888 8999999999999 9999999
Q ss_pred HHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038890 86 NVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK 165 (569)
Q Consensus 86 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 165 (569)
++|++|++||+.+||.+|.+|++.|+++ +|+++|++|...|+.||..||+.++.+|+..+++..+.+++..+.+
T Consensus 142 ~~f~~m~~~d~~~~n~li~~~~~~g~~~------~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 142 YVFGKMPERDLFSWNVLVGGYAKAGYFD------EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHhcCCCCCeeEHHHHHHHHHhCCCHH------HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh------------------------------
Q 038890 166 FGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLR------------------------------ 215 (569)
Q Consensus 166 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~------------------------------ 215 (569)
.|+.||..++|+|+.+|+++|++++|.++|++|.++|..+||+++.+|++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 99999999999999999999999999999998887766666666665555
Q ss_pred ----------------------------------------cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHH
Q 038890 216 ----------------------------------------SGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALE 255 (569)
Q Consensus 216 ----------------------------------------~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 255 (569)
.|++++|.++|++|..+|..+|+.++.+|.+.|++++|++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 5555666666666666778888888889999999999999
Q ss_pred HHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 256 LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 256 ~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
+|++|. ..|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.
T Consensus 376 lf~~M~----~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 376 TYALME----QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHH----HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 999998 7788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHH
Q 038890 336 KKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYAC 415 (569)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+. +.|+.++..+++.
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~na 529 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNA 529 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechH
Confidence 99999999999999999999999999999986 599999999999999999999999999999998 6788999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHH
Q 038890 416 MIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD-PLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
|+++|++.|++++|.++|+.+ .||..+|++++.+|.+.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 999999999999999999988 7899999999999999999999999999998865 4467788999999999999999
Q ss_pred HHHHHHHHH-HCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCccc
Q 038890 495 VKKTRNLMK-ERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRG 561 (569)
Q Consensus 495 A~~~~~~m~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 561 (569)
|.++|+.|. +.|+.|+...+.. ++....+.+..+++.+.+ ++| +..||...
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~---------lv~~l~r~G~~~eA~~~~----~~m---~~~pd~~~ 659 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYAC---------VVDLLGRAGKLTEAYNFI----NKM---PITPDPAV 659 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHH---------HHHHHHhCCCHHHHHHHH----HHC---CCCCCHHH
Confidence 999999998 6788887322221 233334556677777776 344 35666543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=526.57 Aligned_cols=516 Identities=17% Similarity=0.223 Sum_probs=467.7
Q ss_pred CCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCccc
Q 038890 20 SPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCL-QTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYT 98 (569)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 98 (569)
..+++.+.+..+...+.++|++++|.++|+.|.+.++. ++. ..+..++..|.+. |.+++|.++|+.|..|+..+
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~---v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~T 439 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK---IYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLST 439 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHH
Confidence 34456677778888888999999999999999999864 444 6777889999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHH
Q 038890 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSV 178 (569)
Q Consensus 99 ~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 178 (569)
|+.+|.+|++.|+++ .|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+
T Consensus 440 yn~LL~a~~k~g~~e------~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 440 FNMLMSVCASSQDID------GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHHHHHHhCcCHH------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCChhHHHHHHHHHHhCC
Q 038890 179 ISLFMACGFVTSARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMK------KRNIFSWNSIITGFVQGG 248 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g 248 (569)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999965 899999999999999999999999999995 479999999999999999
Q ss_pred ChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHH
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAY 328 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 328 (569)
++++|.++|+.|. ..++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 594 ~ldeA~elf~~M~----e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 594 QVDRAKEVYQMIH----EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred CHHHHHHHHHHHH----HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 329 GVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 329 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. ..
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~ 748 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RL 748 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hc
Confidence 99999974 68999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----c-------------------CCH
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM---PMEPDVFVWGALLGGCQM----H-------------------GNV 458 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------~~~ 458 (569)
|+.||..+|+.++.+|++.|++++|.+++.+| ++.||..+|+.++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 89999999999999999999999999999999 899999999999876542 1 123
Q ss_pred HHHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchH
Q 038890 459 ELGEKVAQYLIDLD-PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKE 537 (569)
Q Consensus 459 ~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (569)
+.|..+|++|.+.+ .++..+|..++.++.+.+..+.+..+++.|...+..|+...++ ..++.+ ... ..
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~-----~Li~g~----~~~--~~ 897 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLS-----TLVDGF----GEY--DP 897 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhH-----HHHHhh----ccC--hH
Confidence 67999999999977 5678899999988889999999999999887777766533332 222222 211 35
Q ss_pred HHHHHHHHHHHHHHhCCcccCccc----ccccc
Q 038890 538 ELVLILNGLSKIMKNGGFGQYIRG----LSMEA 566 (569)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~~~~----~~~~~ 566 (569)
++..++ ++|...|+.|+..+ |++++
T Consensus 898 ~A~~l~----~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 898 RAFSLL----EEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHH----HHHHHcCCCCCcccccCceEEEc
Confidence 677777 99999999999973 55543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=513.85 Aligned_cols=526 Identities=18% Similarity=0.209 Sum_probs=467.4
Q ss_pred HHHHhhhcCCCCCCCC-CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHH
Q 038890 6 QMVSYSLLNSPAKVSP-PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYA 84 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A 84 (569)
-+.|..+++.|.+.+. +++...+..+...+.+.|.+++|..++..+.. |+. .+|+.++..|++. |+++.|
T Consensus 386 l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~---~Tyn~LL~a~~k~--g~~e~A 456 (1060)
T PLN03218 386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL---STFNMLMSVCASS--QDIDGA 456 (1060)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH---HHHHHHHHHHHhC--cCHHHH
Confidence 3678999999988885 45666667788889899999999999998875 677 8999999999999 999999
Q ss_pred HHHhhcCC----CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHH
Q 038890 85 TNVFSHIK----RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVY 160 (569)
Q Consensus 85 ~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 160 (569)
.++|+.|. .||..+||.+|.+|++.|+.+ .|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd------~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD------AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999997 489999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038890 161 GQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS------NRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--- 231 (569)
Q Consensus 161 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 231 (569)
+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999995 38999999999999999999999999999985
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchh
Q 038890 232 -RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVI 310 (569)
Q Consensus 232 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (569)
|+..+|+.+|.+|++.|++++|.++|++|. ..|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~----~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMK----KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 577899999999999999999999999999 888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMP----KKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999995 589999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----c-------------------CCHHHHHHHHHhC---CCCC
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----A-------------------GLFSEAERLIRSM---PMEP 440 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p 440 (569)
.|+++.|.++|..|. +.|+.||..+|+.++..|.+ + +..++|..+|++| |+.|
T Consensus 767 ~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999 78899999999999876432 1 1246799999999 9999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEE
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDL-DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEV 519 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 519 (569)
|..||+.++.++...++.+.+..+++.+... .+++..+|+.|++++.+. .++|..++++|...|+.|+...-.+ .+
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~-~~ 922 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKS-PI 922 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccC-ce
Confidence 9999999998888889999999999887654 466788999999988432 3689999999999999998431111 11
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCC-cccCc
Q 038890 520 DGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGG-FGQYI 559 (569)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~ 559 (569)
.-.++. -+-+..+.++..|-+-.+..-+.| --|..
T Consensus 923 ~~d~~~-----~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~ 958 (1060)
T PLN03218 923 VIDAEE-----LPVFAAEVYLLTILKGLKHRLAAGAKLPNV 958 (1060)
T ss_pred EEEccc-----CcchhHHHHHHHHHHHHHHHHhccCcCCcc
Confidence 111222 233456666666666656666666 34443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-58 Score=480.54 Aligned_cols=482 Identities=18% Similarity=0.278 Sum_probs=440.4
Q ss_pred HHHHhhhcCCCCCCC-CCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHH
Q 038890 6 QMVSYSLLNSPAKVS-PPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYA 84 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A 84 (569)
.+.|..++..|...+ .+++..++..++..+.+.++++.+.+++..+.+.|+.|++ .+++.|+.+|+++ |+++.|
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~---~~~n~Li~~y~k~--g~~~~A 177 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ---YMMNRVLLMHVKC--GMLIDA 177 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch---HHHHHHHHHHhcC--CCHHHH
Confidence 467888888887654 4678889999999999999999999999999999999999 9999999999999 999999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHH
Q 038890 85 TNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVV 164 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 164 (569)
.++|++|++||..+||.+|.+|++.|+++ +|+++|++|.+.|+.||..||+.++.+|+..|..+.+.+++..+.
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~------~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYR------EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHH------HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHH
Q 038890 165 KFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK----KRNIFSWNSI 240 (569)
Q Consensus 165 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l 240 (569)
+.|+.||..++|+|+.+|+++|++++|.++|++|.++|+.+||+++.+|++.|++++|+++|++|. .||..||+.+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999995 5899999999
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
+.+|++.|++++|.+++..|. ..|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.||.+|++
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~----~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLI----RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHhccchHHHHHHHHHHH----HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999 78899999999999999999999999999999985 4789999999999999
Q ss_pred cCChHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 321 CGCVERAYGVFKEMP----KKDTLAWTAMISVFALNGYGKEAFDTFREMEA-EGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.|+.++|.++|++|. .||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999996 47999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
+++++. +.|+..+|+.|+.+|...|+++.|..+++++ +..|+ ..+|..++..|.+.|++++|.++++.|.+.+-
T Consensus 484 ~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 484 MIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 998764 5899999999999999999999999999998 77774 67999999999999999999999999998662
Q ss_pred C--ChhHHHHHH---HHH--------HHcCChHHHHHHHHHHHHCCCCCC
Q 038890 474 L--NHAFYVNLC---DMY--------AKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 474 ~--~~~~~~~l~---~~~--------~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
. ....|..+. ..+ ....-++...++..+|.+.|..|+
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~ 609 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 111111100 000 001124566778889999999987
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-30 Score=281.53 Aligned_cols=503 Identities=12% Similarity=0.061 Sum_probs=314.8
Q ss_pred HHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHH
Q 038890 8 VSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNV 87 (569)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~ 87 (569)
.|...++.....+ |.++.....++.++...|++++|...++...+..+ .+. ..+..+...+... |++++|.+.
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~--~~~~~A~~~ 419 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENA---AARTQLGISKLSQ--GDPSEAIAD 419 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH---HHHHHHHHHHHhC--CChHHHHHH
Confidence 3444444433222 33344555566666666666666666666655422 122 3444455555555 555555555
Q ss_pred hhcCCC-------------------------------------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHH
Q 038890 88 FSHIKR-------------------------------------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLC 130 (569)
Q Consensus 88 ~~~~~~-------------------------------------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~ 130 (569)
|+.+.. .+...|+.+...+...|++. +|.+.|+++.+
T Consensus 420 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~a~~ 493 (899)
T TIGR02917 420 LETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA------KAREAFEKALS 493 (899)
T ss_pred HHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHH------HHHHHHHHHHh
Confidence 554432 23344555555555555555 55555555554
Q ss_pred CCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHH
Q 038890 131 TGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWN 207 (569)
Q Consensus 131 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 207 (569)
.. +.+...+..+...+...|++++|..+++.+.+.++. +..++..+...+.+.|+.++|...++++.. .+...+.
T Consensus 494 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 571 (899)
T TIGR02917 494 IE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571 (899)
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHH
Confidence 22 112233444444455555555555555555554422 445555555555566666666666655533 2334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHH
Q 038890 208 AMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACA 284 (569)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~ 284 (569)
.++..+...|++++|..+++.+.+ .+...|..+..++...|++++|...|+.+.+. .+.+...+..+..++.
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHH
Confidence 566666666666666666666542 24456666666666667777777766666521 1334555666666666
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHH
Q 038890 285 YLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
..|++++|...++++.+.. +.+...+..++..+...|++++|..+++.+.. .+...+..+...+...|++++|+..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 6777777777776666543 44456666667777777777777777766654 2455666777777788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-C
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-E 439 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 439 (569)
|+++...+ |+..++..+..++...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++ .. +
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 88877743 445666777788888888888888888877543 566778888888888889999999988888 33 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEE
Q 038890 440 PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEV 519 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 519 (569)
++..+++.+...+...|+ ++|+..++++.+..|.++..+..++.++...|++++|.++++++.+.+.. + |....
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~-~~~~~--- 875 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-A-AAIRY--- 875 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-hHHHH---
Confidence 467788888888888888 77999999998888888888889999999999999999999999886643 2 22111
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHH
Q 038890 520 DGVVHEFSMKGSPKVVKEELVLILNGL 546 (569)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 546 (569)
.+.......++.+++.+.++++
T Consensus 876 -----~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 876 -----HLALALLATGRKAEARKELDKL 897 (899)
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHH
Confidence 0111123345677777777554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=278.95 Aligned_cols=457 Identities=10% Similarity=0.058 Sum_probs=395.3
Q ss_pred CCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHH
Q 038890 24 KESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYN 100 (569)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 100 (569)
+......++..+...|++++|..+++.+.+.. +.++ .++..+...|... |++++|.+.|+++.+ .+...+.
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~ 503 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNA---SLHNLLGAIYLGK--GDLAKAREAFEKALSIEPDFFPAAA 503 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCc---HHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34445566677777888888888888887653 3445 7889999999999 999999999998763 3556778
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVIS 180 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 180 (569)
.+...+...|++. +|.+.|+++.+.+ +.+..++..+...+...|+.++|..+++.+.+.++. +...+..++.
T Consensus 504 ~la~~~~~~g~~~------~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 575 (899)
T TIGR02917 504 NLARIDIQEGNPD------DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQ 575 (899)
T ss_pred HHHHHHHHCCCHH------HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 8888899999999 9999999999854 335667888888899999999999999999887643 6677888999
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREAL 254 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 254 (569)
.|.+.|++++|..+++.+.+ .+...|..+...+...|++++|...|+++.+ .+...+..+..++.+.|++++|.
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999875 4677899999999999999999999998864 35667889999999999999999
Q ss_pred HHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 255 ELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 255 ~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
..|+++.+ ..+.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+
T Consensus 656 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 656 TSLKRALE-----LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999863 234568889999999999999999999999998876 667788889999999999999999999987
Q ss_pred CC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 335 PK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 335 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
.. ++..++..++.++...|++++|...++++.+.. +.+...+..+...|...|++++|...|+.+.+.. +.++..
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 806 (899)
T TIGR02917 730 LKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVV 806 (899)
T ss_pred HhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHH
Confidence 64 455778888999999999999999999998863 4467788889999999999999999999999654 677889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
++.+...+...|+ .+|+.+++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..++.++.+.|
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 9999999999999 8899999988 4444 55678888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 038890 491 RFDDVKKTRNLMKE 504 (569)
Q Consensus 491 ~~~~A~~~~~~m~~ 504 (569)
++++|.+++++|++
T Consensus 886 ~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 886 RKAEARKELDKLLN 899 (899)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-22 Score=220.30 Aligned_cols=482 Identities=12% Similarity=0.037 Sum_probs=369.5
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCC----------------CCCchhHHH---
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCL----------------QTNDHHSLI--- 66 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~--- 66 (569)
.+.|...++...+.. |.++.....++.++...|+.++|...++++.+.... .++.....+
T Consensus 163 ~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 163 RPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 345666777665555 556777889999999999999999999887653210 000000000
Q ss_pred -------------------------------HHHHHHhhcCCCCChhHHHHHhhcCCC--C-CcccHHHHHHHHhcCCCC
Q 038890 67 -------------------------------TRLLFFCALSVSGSLSYATNVFSHIKR--S-DLYTYNIMIRANACKSSE 112 (569)
Q Consensus 67 -------------------------------~~l~~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~ 112 (569)
......+... |++++|...|++..+ | +...+..+...+.+.|++
T Consensus 242 l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 242 LQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 1113345556 999999999998763 3 667888999999999999
Q ss_pred CCCCChhHHHHHHHHHHHCCCCCCcc---cHH------------HHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHH
Q 038890 113 TNDTHSGKCLKLYKQMLCTGISPDCL---TFP------------FLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNS 177 (569)
Q Consensus 113 ~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 177 (569)
+ +|+..|++..+.. |+.. .+. .....+...|++++|...|+++++..+. +...+..
T Consensus 320 ~------eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~ 390 (1157)
T PRK11447 320 A------RAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLG 390 (1157)
T ss_pred H------HHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 9 9999999998853 4432 111 1234567889999999999999998643 6677788
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------------hhHHHHHHH
Q 038890 178 VISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKKRN------------IFSWNSIIT 242 (569)
Q Consensus 178 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~l~~ 242 (569)
+..++...|++++|.+.|++..+ | +...+..+...|. .++.++|+..++.+.... ...+..+..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999876 3 4456666777764 568899999998876421 223556677
Q ss_pred HHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
.+...|++++|+..|++.++. .+-+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 889999999999999998742 23356777888899999999999999999998754 445556666666778899
Q ss_pred ChHHHHHHHhhCCCCC----h---------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 323 CVERAYGVFKEMPKKD----T---------LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
+.++|...++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 9999999999886431 1 1123456678889999999999872 34455677778889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
+++|+..|+.+.+.. +.+...+..++.+|...|++++|++.++.. ...| +..++..+..++...|++++|.+++++
T Consensus 619 ~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999654 557889999999999999999999999988 4455 455677788889999999999999999
Q ss_pred HhhcCCCCh------hHHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCCCCCc
Q 038890 468 LIDLDPLNH------AFYVNLCDMYAKAGRFDDVKKTRNLMK-ERGIRKEVPG 513 (569)
Q Consensus 468 ~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~ 513 (569)
+....|+++ .++..++..+.+.|++++|...|++.. ..|+.|..|.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 998765543 456677899999999999999999884 4567666554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-22 Score=217.17 Aligned_cols=484 Identities=10% Similarity=0.003 Sum_probs=285.3
Q ss_pred hhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchh------------HHHHHHH
Q 038890 3 KKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHH------------SLITRLL 70 (569)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~~~~~l~ 70 (569)
+...+.|.+.|+...... |.++......+.++...|+.++|.+.++.+.+..+....... .....+.
T Consensus 41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 344566777777665555 556777888888888999999999999999988644332000 0123345
Q ss_pred HHhhcCCCCChhHHHHHhhcCCCCCcccHHH----HHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHH
Q 038890 71 FFCALSVSGSLSYATNVFSHIKRSDLYTYNI----MIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLK 145 (569)
Q Consensus 71 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 145 (569)
..+... |++++|.+.|+.+.+.++..... ........|++. +|++.|+++.+.. | +...+..+..
T Consensus 120 ~ll~~~--g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~------~A~~~L~~ll~~~--P~~~~~~~~LA~ 189 (1157)
T PRK11447 120 RLLATT--GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP------EAINQLQRLNADY--PGNTGLRNTLAL 189 (1157)
T ss_pred HHHHhC--CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH------HHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 567788 99999999999887533322211 111112346666 9999999998853 5 4445666777
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCC--------------------------------CcHhH-------------------
Q 038890 146 ECTKRLDGLVGASVYGQVVKFGVC--------------------------------DDVFV------------------- 174 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~~~~g~~--------------------------------~~~~~------------------- 174 (569)
.+...|+.++|...++++.+.... |+...
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 788889999999998887543210 00000
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---hHHH------
Q 038890 175 --QNSVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNI---FSWN------ 238 (569)
Q Consensus 175 --~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------ 238 (569)
......++...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 00123456677899999999988765 3 667888888999999999999999988764 321 1121
Q ss_pred ------HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHH
Q 038890 239 ------SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 239 ------~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
.....+.+.|++++|...|+++... .+.+...+..+..++...|++++|...|+++.+.. +.+...+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQV-----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2234677889999999999998732 23456677778888899999999999999888764 33344444
Q ss_pred HHHHHH------------------------------------------HhcCChHHHHHHHhhCCC--C-ChhHHHHHHH
Q 038890 313 ALVDMY------------------------------------------GKCGCVERAYGVFKEMPK--K-DTLAWTAMIS 347 (569)
Q Consensus 313 ~l~~~~------------------------------------------~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 347 (569)
.+...| ...|++++|.+.|++..+ | +...+..+..
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444443 234444444444444432 1 2333444444
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-----------------------
Q 038890 348 VFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY----------------------- 404 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------- 404 (569)
.+...|++++|+..++++.+.. +.+...+..+...+...++.++|...++.+....
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 5555555555555555544321 1122222222223344455555555554432100
Q ss_pred ---------------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 405 ---------------LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 405 ---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
..+.+...+..+...+.+.|++++|+..|++. ...| +...+..++..+...|++++|++.++.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00112223333444444555555555555544 2233 344555555555555555555555555
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 468 LIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 468 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+.+..|+++..+..++.++.+.|++++|.++++++..
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5555555555555555555555555555555555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=187.35 Aligned_cols=439 Identities=13% Similarity=0.125 Sum_probs=346.9
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHH
Q 038890 28 KLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIR 104 (569)
Q Consensus 28 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 104 (569)
...++.-+.+.|++++|++.-..+-...+...+ ....+-..+... .+.+.-..--....+ .-..+|+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~----~llll~ai~~q~--~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE----RLLLLSAIFFQG--SRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCccc----ceeeehhhhhcc--cchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 455666667778888887766666555433333 222222334443 333332222222222 23477888889
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh-HHHHHHHHH
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF-VQNSVISLF 182 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~ 182 (569)
.+-..|++. .|+..|+.|++ ++| ....|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+.+....
T Consensus 125 ~~kerg~~~------~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 125 ILKERGQLQ------DALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLL 194 (966)
T ss_pred HHHHhchHH------HHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHH
Confidence 999999999 99999999998 456 56789999999999999999999999998865 4443 333455556
Q ss_pred HhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCChHHHHHH
Q 038890 183 MACGFVTSARMLFDEMSN--RD-VVSWNAMIIGYLRSGDLDVALDLFRRMKKRN---IFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 183 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
...|++.+|...|.+..+ |. ...|+.|.-.+-..|+...|++-|++..+-| ...|-.|...|-..+.+++|+..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 668999999998888766 43 3579999999999999999999999988643 35788999999999999999999
Q ss_pred HHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 257 FQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
|.+... ..| ....+..+...|...|.++.|+..|++..+.. +.-+..|+.|..++-..|++.+|...|.+..
T Consensus 275 Y~rAl~------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 275 YLRALN------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHh------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 998762 234 46677888888899999999999999998864 4457889999999999999999999999876
Q ss_pred C---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-H
Q 038890 336 K---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-V 410 (569)
Q Consensus 336 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 410 (569)
. ....+.+.|...+...|.++.|..+|....+ +.|. ....+.|...|-+.|++++|+..+++..+ +.|+ .
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHH
Confidence 4 3567788899999999999999999998887 4555 45788888999999999999999999885 3565 5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
..|+.+...|...|+.+.|++.+.+. .+.|.. ...+.|...+...|++.+|++.++.+.++.|+.+.++-.++.++.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 78999999999999999999999988 777754 5888999999999999999999999999999999999999888776
Q ss_pred cCChHH
Q 038890 489 AGRFDD 494 (569)
Q Consensus 489 ~g~~~~ 494 (569)
..+|.+
T Consensus 503 vcdw~D 508 (966)
T KOG4626|consen 503 VCDWTD 508 (966)
T ss_pred Hhcccc
Confidence 666554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-21 Score=181.67 Aligned_cols=444 Identities=13% Similarity=0.090 Sum_probs=350.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCc-ccHH-HHH-HHHhcCCCCCCCCC
Q 038890 41 MRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDL-YTYN-IMI-RANACKSSETNDTH 117 (569)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~li-~~~~~~~~~~~~~~ 117 (569)
...+-.+.++..+.+.. +. -...|..-.-+. |++++|++.-..+-+.|. .+=+ .++ ..+.+..+++
T Consensus 31 s~~s~~v~qq~~~t~~~-~~----~~l~lah~~yq~--gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d---- 99 (966)
T KOG4626|consen 31 SSGSSSVLQQFNKTHEG-SD----DRLELAHRLYQG--GDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLD---- 99 (966)
T ss_pred cccchHHHHHhccCCcc-ch----hHHHHHHHHHhc--cCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchh----
Confidence 33344455555544322 12 234445444555 999999988776654322 1111 122 3344444444
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhh
Q 038890 118 SGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDE 197 (569)
Q Consensus 118 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 197 (569)
+...--....+. .+--..+|..+.+.+-..|+++.|+.+++.+++..+. ....|..+..++...|+.+.|.+.|-+
T Consensus 100 --~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 100 --KSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred --hhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 333322222221 2235678999999999999999999999999998644 678899999999999999999999998
Q ss_pred cCC--CChhH-HHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc
Q 038890 198 MSN--RDVVS-WNAMIIGYLRSGDLDVALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP 271 (569)
Q Consensus 198 ~~~--~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p 271 (569)
..+ |+... .+.+...+...|+.++|...|.+..+ |. ...|+.|...+-.+|+...|+..|++.++ +.|
T Consensus 176 alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk------ldP 249 (966)
T KOG4626|consen 176 ALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK------LDP 249 (966)
T ss_pred HHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc------CCC
Confidence 877 44333 33455566678999999999988765 43 45799999999999999999999999873 345
Q ss_pred c-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHH
Q 038890 272 D-KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMIS 347 (569)
Q Consensus 272 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 347 (569)
+ ...|-.+...|...+.++.|...|.++.... +.....+..+...|-..|.+|.|+..|++..+. -+..|+.|..
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 4 5678899999999999999999999887764 445677888888899999999999999998763 3578999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH
Q 038890 348 VFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (569)
++-..|++.+|.+.|.+.+.. .|+ ....+.|...+...|.++.|..+|....+.+ +--....+.|...|...|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccH
Confidence 999999999999999999874 444 5688999999999999999999999988543 33357889999999999999
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++|+..|++. .++|+. ..|+.+...|...|+.+.|++.+.+++..+|.-..+++.|+..|-..|++.+|+.-++...+
T Consensus 405 ~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999999998 888975 58999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCC
Q 038890 505 RGIRKEVP 512 (569)
Q Consensus 505 ~g~~~~~~ 512 (569)
++||.|
T Consensus 485 --lkPDfp 490 (966)
T KOG4626|consen 485 --LKPDFP 490 (966)
T ss_pred --cCCCCc
Confidence 566654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-19 Score=186.02 Aligned_cols=440 Identities=12% Similarity=0.023 Sum_probs=292.5
Q ss_pred cChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCcccHHHHHHHHhcCCCCCCCC
Q 038890 39 KNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--SDLYTYNIMIRANACKSSETNDT 116 (569)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~~~ 116 (569)
|++++|...|++.++..+.. + .++..|...|.+. |+.++|+..+++..+ |+-..|..++..+ +++.
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~---~~~~~LA~~yl~~--g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~--- 125 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-I---PLTLYLAEAYRHF--GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEV--- 125 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-H---HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccCh---
Confidence 77778888888877764433 4 6777777888887 888888887777664 3222333323222 5555
Q ss_pred ChhHHHHHHHHHHHCCCCCCcc-c---------------------------------------HHHH-HHHHHccCCcHH
Q 038890 117 HSGKCLKLYKQMLCTGISPDCL-T---------------------------------------FPFL-LKECTKRLDGLV 155 (569)
Q Consensus 117 ~~~~A~~~~~~m~~~g~~p~~~-~---------------------------------------~~~l-l~~~~~~~~~~~ 155 (569)
+|..+|+++.... |+.. . .... ...|...++++.
T Consensus 126 ---kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 ---KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred ---hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 7777777776532 3221 1 2222 444556677777
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038890 156 GASVYGQVVKFGVCDDVFVQNSVISLFMA-CGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--- 231 (569)
Q Consensus 156 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 231 (569)
|+.++..+.+.++. +......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|..+++++..
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 77777777776643 44445556666666 355 6666666554445777888899999999999999999988731
Q ss_pred --C-----------------------------------------------------------------------------
Q 038890 232 --R----------------------------------------------------------------------------- 232 (569)
Q Consensus 232 --~----------------------------------------------------------------------------- 232 (569)
|
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 0
Q ss_pred ----------------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCC---------------------------
Q 038890 233 ----------------NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMV--------------------------- 269 (569)
Q Consensus 233 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------------------- 269 (569)
+....--+.-...+.|+.++|.++|+...... ..+.
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-GDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-cccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 00000000111223444555555555443200 0000
Q ss_pred ----------------------------------Cc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHH
Q 038890 270 ----------------------------------KP--DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTA 313 (569)
Q Consensus 270 ----------------------------------~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (569)
++ +...+..+..++.. +++++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 11 22233333333333 45555666555555442 34333333
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCH
Q 038890 314 LVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSGLV 390 (569)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 390 (569)
+...+...|++++|...|+++.. ++...+..+...+...|+.++|...+++..+.. |+. ..+..+...+...|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 44455678888888888887654 334456666777888899999999998888753 333 3333444445566999
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
++|...++...+. .|+...|..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++
T Consensus 593 ~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999853 477889999999999999999999999998 5566 5567888888999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 469 IDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 469 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+..|.++.++..++.++...|++++|...+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-19 Score=187.96 Aligned_cols=392 Identities=11% Similarity=-0.014 Sum_probs=290.5
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHH
Q 038890 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSV 178 (569)
Q Consensus 99 ~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 178 (569)
+......+.+.|++. .|+..|++.++ +.|+...|..+..++...|+++.|...++..++..+. +...+..+
T Consensus 130 ~k~~G~~~~~~~~~~------~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~ 200 (615)
T TIGR00990 130 LKEKGNKAYRNKDFN------KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRR 200 (615)
T ss_pred HHHHHHHHHHcCCHH------HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 334556677778888 99999999987 5688888888888899999999999999999987643 66788889
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------
Q 038890 179 ISLFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSGDLDVALDLFRRMKK------------------------ 231 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 231 (569)
..+|...|++++|...|...... +......++..+........+...++.-..
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999999998877654321 111111111111111111222222221111
Q ss_pred -----CCh---hHHHHHHHH---HHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038890 232 -----RNI---FSWNSIITG---FVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYL 299 (569)
Q Consensus 232 -----~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 299 (569)
.+. ..+..+... ....+++++|.+.|+.....+ ...| +...+..+...+...|++++|...+++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000 011111111 122468999999999987321 1233 4566778888889999999999999999
Q ss_pred HHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 038890 300 RRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376 (569)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 376 (569)
.+.. +.....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...
T Consensus 358 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 358 IELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 8764 44466788889999999999999999998754 367889999999999999999999999998853 224567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-F-------VWGA 447 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ 447 (569)
+..+..++.+.|++++|+..|+...+.. +.+...|+.+..++...|++++|+..|++. ...|+. . .++.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 7788888999999999999999998544 456788999999999999999999999987 444421 1 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
....+...|++++|.++++++.+.+|.+..++..++.++.+.|++++|.++|++..+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22233447999999999999999999999999999999999999999999999987643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-19 Score=186.13 Aligned_cols=468 Identities=11% Similarity=0.002 Sum_probs=336.3
Q ss_pred HHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHH
Q 038890 8 VSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNV 87 (569)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~ 87 (569)
.|...++...+.+|. ++.....++..+...|+.++|+...+...+..+ +. ...+..+ +.. +++++|..+
T Consensus 62 ~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n--~~~~~~L----a~i--~~~~kA~~~ 130 (987)
T PRK09782 62 TAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GD--ARLERSL----AAI--PVEVKSVTT 130 (987)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--cc--HHHHHHH----HHh--ccChhHHHH
Confidence 566667766666644 478888999999999999999999999988743 33 1333333 333 667888888
Q ss_pred hhcCCC--CC-cccHHHHHHH------------------H-hc----CCC-----------CCCCCChhHHHHHHHHHHH
Q 038890 88 FSHIKR--SD-LYTYNIMIRA------------------N-AC----KSS-----------ETNDTHSGKCLKLYKQMLC 130 (569)
Q Consensus 88 ~~~~~~--~~-~~~~~~li~~------------------~-~~----~~~-----------~~~~~~~~~A~~~~~~m~~ 130 (569)
++++.. |+ ...+..+... + .+ .|. +..-++++.|++++.++.+
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 888763 32 2222222221 0 00 001 0012455589999999999
Q ss_pred CCCCCC-cccHHHHHHHHHc-cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh
Q 038890 131 TGISPD-CLTFPFLLKECTK-RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-----RDV 203 (569)
Q Consensus 131 ~g~~p~-~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~ 203 (569)
.+ |. ..-...+..++.. .++ +.+..+++. .+..+...+..++..|.+.|+.++|.++++++.. |..
T Consensus 211 ~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 211 QN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred cC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 75 43 3345566667776 466 777777553 3345788899999999999999999999998864 222
Q ss_pred hHHHHH------------------------------HHHHHh--------------------------------------
Q 038890 204 VSWNAM------------------------------IIGYLR-------------------------------------- 215 (569)
Q Consensus 204 ~~~~~l------------------------------~~~~~~-------------------------------------- 215 (569)
.+|... +..+.+
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 222111 111111
Q ss_pred -------------------------cCCHHHHHHHHHhcCC---------------------------------------
Q 038890 216 -------------------------SGDLDVALDLFRRMKK--------------------------------------- 231 (569)
Q Consensus 216 -------------------------~g~~~~A~~~~~~~~~--------------------------------------- 231 (569)
.|+.++|.++|+....
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 5666666666655421
Q ss_pred -----------------------------C--ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHH
Q 038890 232 -----------------------------R--NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVL 280 (569)
Q Consensus 232 -----------------------------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll 280 (569)
+ +...|..+..++.. ++.++|...+.+... ..|+......+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~------~~Pd~~~~L~lA 516 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ------RQPDAWQHRAVA 516 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH------hCCchHHHHHHH
Confidence 0 22234444555544 677778887777652 236655544455
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHH---HHHHHHHcCChhH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTA---MISVFALNGYGKE 357 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~ 357 (569)
..+...|++++|...++++... +|+...+..+..++.+.|++++|...|+...+.++..... +.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 5567899999999999987654 4555556677888999999999999999887654333333 3333445599999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038890 358 AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM- 436 (569)
Q Consensus 358 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 436 (569)
|+..+++..+. .|+...+..+..++.+.|++++|...++...... +.+...+..+..++...|++++|++.+++.
T Consensus 595 Al~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999874 5678889999999999999999999999999654 556788899999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 437 PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 437 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...| +...+..+..++...|++++|+..++++.+..|++..+....++...+..+++.|.+-+++-...+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5556 567899999999999999999999999999999999999999999999999999999888765543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-20 Score=180.40 Aligned_cols=297 Identities=15% Similarity=0.068 Sum_probs=191.4
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C------hhHHHHHHHHHHhCCCh
Q 038890 181 LFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKKR-N------IFSWNSIITGFVQGGRA 250 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~g~~ 250 (569)
.+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666665544 2 2234444555555555555555555544421 1 12344444555555555
Q ss_pred HHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHH
Q 038890 251 REALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGV 330 (569)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (569)
++|..+|+++. .. .+++..++..++..+...|++++|...++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------- 178 (389)
T PRK11788 124 DRAEELFLQLV----DE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------- 178 (389)
T ss_pred HHHHHHHHHHH----cC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------
Confidence 55555555543 11 123334444444444444444444444444443321110000
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH
Q 038890 331 FKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV 410 (569)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 410 (569)
....+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.++++++.... -....
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 249 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHH
Confidence 01134456667778889999999999888753 2235577778888999999999999999988532 11124
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH-
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK- 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 488 (569)
.+++.++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..+++++.+..|++. .+..++..+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhc
Confidence 56788999999999999999999998 5577777778889999999999999999999999988876 45555555553
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCCCc
Q 038890 489 --AGRFDDVKKTRNLMKERGIRKEVPG 513 (569)
Q Consensus 489 --~g~~~~A~~~~~~m~~~g~~~~~~~ 513 (569)
.|+.+++..++++|.+.++.|+ |.
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~-p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRK-PR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCC-CC
Confidence 5699999999999999999888 64
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-17 Score=175.92 Aligned_cols=195 Identities=10% Similarity=-0.058 Sum_probs=131.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCC-------hhHHHHHHHHHHHc
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLD-CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKD-------TLAWTAMISVFALN 352 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~ 352 (569)
..+...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++...+ ......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667888888888887776522 221 22234667788888888888887765422 12345556677788
Q ss_pred CChhHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGV-----------RPNH---VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
|++++|..+++.+..... .|+. ..+..+...+...|+.++|+..++++.... +.+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 888888888888776421 1231 234455566777788888888888877543 556677777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
.+...|++++|++.+++. ...|+ ...+...+..+...|++++|+..++++++..|+++.+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 888888888888888877 55564 4556666667777888888888888888888887643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-17 Score=166.49 Aligned_cols=439 Identities=12% Similarity=-0.007 Sum_probs=329.3
Q ss_pred CCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHH
Q 038890 21 PPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYN 100 (569)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 100 (569)
.|..+.+....+-+..+.|++..|...++++++..+...+ .++ .++..+... |+.++|+..+++...|+...+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~---av~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~ 103 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG---QVD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSR 103 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh---hHH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHH
Confidence 3445566677777778889999999999999998655444 455 888999999 9999999999999877554443
Q ss_pred -HH--HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH
Q 038890 101 -IM--IRANACKSSETNDTHSGKCLKLYKQMLCTGISPD-CLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN 176 (569)
Q Consensus 101 -~l--i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 176 (569)
.+ ...+...|++. +|+++|+++.+.. |+ +..+..++..+...++.++|+..++.+.+.. |+...+.
T Consensus 104 ~llalA~ly~~~gdyd------~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l 173 (822)
T PRK14574 104 GLASAARAYRNEKRWD------QALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYM 173 (822)
T ss_pred HHHHHHHHHHHcCCHH------HHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHH
Confidence 33 34667779999 9999999999954 54 4566667777889999999999999998864 4455554
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhH--------HHHHHHHH
Q 038890 177 SVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKKR-NIFS--------WNSIITGF 244 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~l~~~~ 244 (569)
.++..+...++..+|++.++++.+ | +...+..+...+.+.|-...|+++..+-+.- +... ...+++.-
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 444445446667669999999977 4 5667788899999999999999998876631 1111 11111110
Q ss_pred -----HhCCCh---HHHHHHHHHchhccccCCCCccHH----HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHH
Q 038890 245 -----VQGGRA---REALELFQEMQSSSVEEMVKPDKI----TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 245 -----~~~g~~---~~a~~~~~~m~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
....++ +.|+.-++.+... ....++... ...-.+.++...+++.++...|+.+...+.+....+..
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~--~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTR--WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhh--ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 012233 4455555555421 111232222 22344567788999999999999999988765667888
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-----------CC
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPKK---------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGV-----------RP 372 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p 372 (569)
.+.++|...+++++|..+|+.+... +......|..++...+++++|..+++++.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 9999999999999999999988542 223356788999999999999999999987321 12
Q ss_pred C--HH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 038890 373 N--HV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGA 447 (569)
Q Consensus 373 ~--~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 447 (569)
+ -. .+..++..+...|+..+|++.++.+.... |-|......+.+.+...|.+.+|++.++.. ...|+ ..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 2 22 34455677889999999999999998544 678899999999999999999999999877 55664 567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
.+.++...+++++|..+.+.+.+..|+++.+-
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88888999999999999999999999988543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-17 Score=172.40 Aligned_cols=330 Identities=12% Similarity=0.000 Sum_probs=261.4
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHH
Q 038890 136 DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIG 212 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 212 (569)
+......++..+.+.|+++.|..+++..+...+. +...+..++.+....|++++|...|+++.. | +...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344556677788999999999999999888755 444555566777789999999999999876 3 45678888899
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCH
Q 038890 213 YLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAI 289 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 289 (569)
+...|++++|...|++..+ | +...+..+...+...|++++|...++.+.. .. +.+...+..+ ..+...|++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~----~~-P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ----EV-PPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hC-CCCHHHHHHH-HHHHHcCCH
Confidence 9999999999999999875 3 456788889999999999999999998752 11 2223333333 347788999
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhH----HHHHH
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKE----AFDTF 362 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~ 362 (569)
++|...++.+.+....++......+..++...|++++|...|+.... .+...+..+...+...|++++ |+..|
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999987765334445555667888899999999999998764 356778888999999999985 89999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038890 363 REMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD 441 (569)
Q Consensus 363 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 441 (569)
++..+.. +.+...+..+...+...|++++|...++...... +.+...+..+..++.+.|++++|+..|+++ ...|+
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 9988752 2245688888899999999999999999998643 445677888899999999999999999988 55666
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 442 VFV-WGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 442 ~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
... +..+..++...|+.++|...|+++.+..|.+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 543 4445677889999999999999999988774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-18 Score=168.93 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=215.1
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CC------hhHHHHHHHHHHhc
Q 038890 144 LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RD------VVSWNAMIIGYLRS 216 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~ 216 (569)
...+...|+++.|...|.++.+.++ .+..++..+...+...|++++|..+++.+.. ++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4445678999999999999999864 3667889999999999999999999998876 22 24678889999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc----HHHHHHHHHHHHccCCH
Q 038890 217 GDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD----KITIASVLSACAYLGAI 289 (569)
Q Consensus 217 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~ 289 (569)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+ .+..+. ...+..+...+...|++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK----LGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999975 4567899999999999999999999999973 222221 11233444555566666
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
++|...++++.+.. +. +...+..+...+...|++++|+++|+++.+.+
T Consensus 197 ~~A~~~~~~al~~~-p~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 197 DAARALLKKALAAD-PQ-------------------------------CVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHHHhHC-cC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 66666666655432 11 22344556666777777777777777777643
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038890 370 VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGAL 448 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 448 (569)
......++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+..++..+
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 2222356677788888888888888888888743 366666788888888999999999988877 667888888887
Q ss_pred HHHHHh---cCCHHHHHHHHHHHhh
Q 038890 449 LGGCQM---HGNVELGEKVAQYLID 470 (569)
Q Consensus 449 ~~~~~~---~~~~~~a~~~~~~~~~ 470 (569)
+..+.. .|+.+++...++++.+
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHH
Confidence 777654 4578888888888776
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-17 Score=171.24 Aligned_cols=387 Identities=9% Similarity=-0.014 Sum_probs=283.1
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 038890 103 IRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLF 182 (569)
Q Consensus 103 i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 182 (569)
+......|+.. +|+++|.+..... +.+...+..+..++...|++++|..+++..++..+. +...+..+..++
T Consensus 22 ~~ia~~~g~~~------~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l 93 (765)
T PRK10049 22 LQIALWAGQDA------EVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTL 93 (765)
T ss_pred HHHHHHcCCHH------HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34456677777 8888888887521 233445777778888888899998888888887533 556667788888
Q ss_pred HhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHH
Q 038890 183 MACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALEL 256 (569)
Q Consensus 183 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~ 256 (569)
...|++++|...++++.+ | +.. +..+...+...|+.++|+..++++.+ | +...+..+..++...|..++|+..
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 888999999888888765 3 445 77788888888999999988888774 3 344566677788888888889888
Q ss_pred HHHchhccccCCCCccH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHHHh-CCCCcch-hH----HHHHH
Q 038890 257 FQEMQSSSVEEMVKPDK------ITIASVLSACA-----YLGAI---DHGKWVHGYLRRS-GLDCDVV-IG----TALVD 316 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~ 316 (569)
++... . .|+. .....+++... ..+++ ++|...++.+.+. ...|+.. .+ ...+.
T Consensus 173 l~~~~----~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 173 IDDAN----L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHhCC----C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 88765 2 2221 11122222222 12234 6778888888754 1222221 11 11133
Q ss_pred HHHhcCChHHHHHHHhhCCCCC---h-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCC
Q 038890 317 MYGKCGCVERAYGVFKEMPKKD---T-LAWTAMISVFALNGYGKEAFDTFREMEAEGVRP---NHVTFVGLLSACAHSGL 389 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~ 389 (569)
++...|++++|...|+.+.+.+ + .....+...+...|++++|+..|+++.+..... .......+..++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4567799999999999998642 1 122335778999999999999999987643211 12455666778899999
Q ss_pred HHHHHHHHHHhHHhcC----------CCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 390 VEKGRWCFVMMRHVYL----------VEPH---VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
+++|..+++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999885431 0122 235567888899999999999999998 4444 66788899999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 455 HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.|++++|++.++++.+..|++..++..++..+.+.|++++|..+++++.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-17 Score=170.82 Aligned_cols=343 Identities=12% Similarity=0.021 Sum_probs=268.7
Q ss_pred CChhHHHHHhhcCCC------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccC
Q 038890 79 GSLSYATNVFSHIKR------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPD-CLTFPFLLKECTKRL 151 (569)
Q Consensus 79 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 151 (569)
.+++.---.|...++ .+....-.++..+.+.|++. .|+.+++...... |+ ...+..++.+....|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETD------VGLTLLSDRVLTA--KNGRDLLRRWVISPLASS 90 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcc------hhHHHhHHHHHhC--CCchhHHHHHhhhHhhcC
Confidence 455555555555442 13344556677888999999 9999999998853 43 445555666677899
Q ss_pred CcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038890 152 DGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRR 228 (569)
Q Consensus 152 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (569)
+++.|...++.+.+..+. +...+..+..++...|++++|...+++..+ | +...+..+...+...|++++|...++.
T Consensus 91 ~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 999999999999998644 677888889999999999999999999876 3 566888899999999999999999987
Q ss_pred cCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 038890 229 MKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD 305 (569)
Q Consensus 229 ~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 305 (569)
+.. |+ ...+..+ ..+...|++++|...++.+. .....++......+..++...|++++|...++.+.... +
T Consensus 170 ~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l----~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 170 QAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL----PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred HHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH----hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 742 33 3334333 34788999999999999987 33223444555566778889999999999999998875 5
Q ss_pred CcchhHHHHHHHHHhcCChHH----HHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVER----AYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTF 377 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 377 (569)
.+...+..+...|...|++++ |...|++... .+...+..+...+...|++++|+..+++..+. .|+ ...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 567788889999999999986 7888888764 35678889999999999999999999999885 344 4567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEPD 441 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 441 (569)
..+..++...|++++|...++.+.... |+. ..+..+..++...|++++|+..|++. ...|+
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 778889999999999999999988543 443 34455677889999999999999988 44443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-16 Score=165.30 Aligned_cols=251 Identities=13% Similarity=-0.002 Sum_probs=203.6
Q ss_pred cCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCC
Q 038890 216 SGDLDVALDLFRRMKKR------NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGA 288 (569)
Q Consensus 216 ~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 288 (569)
.+++++|...|+...+. ....|+.+...+...|++++|+..|++... ..| +...|..+..++...|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------l~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE------LDPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHCCC
Confidence 47899999999987642 345688888899999999999999999873 234 46678888889999999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
+++|...++.+.+.. +.+..++..+...+...|++++|...|++..+. +...+..+...+.+.|++++|+..|++.
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998875 566788999999999999999999999988653 5667888889999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-H-------hHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038890 366 EAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-V-------YHYACMIDILSRAGLFSEAERLIRSM- 436 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~- 436 (569)
.+.. +.+...+..+..++...|++++|...|+...... |+ . ..++.....+...|++++|.+++++.
T Consensus 460 l~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 460 KKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE---KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8742 3346788888999999999999999999987532 22 1 11222233344579999999999987
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 437 PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 437 ~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
...|+ ...+..+...+.+.|++++|...|+++.++.+....
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 55564 457888999999999999999999999998776443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-15 Score=158.63 Aligned_cols=425 Identities=10% Similarity=-0.003 Sum_probs=312.2
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcc---cHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLY---TYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF 140 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 140 (569)
.....-+-...+. |+++.|+..|++..+.++. .-..++..+...|+.. +|+..+++.. .|+...+
T Consensus 35 ~~~y~~aii~~r~--Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~------~A~~~~eka~----~p~n~~~ 102 (822)
T PRK14574 35 DTQYDSLIIRARA--GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ------EVIDVYERYQ----SSMNISS 102 (822)
T ss_pred hHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH------HHHHHHHHhc----cCCCCCH
Confidence 3334444445566 9999999999998853332 2337788888889999 9999999998 3544444
Q ss_pred HHH---HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHh
Q 038890 141 PFL---LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLR 215 (569)
Q Consensus 141 ~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~ 215 (569)
..+ ...+...|+++.|.++|+.+++..+. +...+..++..+...++.++|++.++++.. |+...+..++..+..
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~ 181 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh
Confidence 433 34677789999999999999998765 567777889999999999999999999988 444444334334444
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHH------HHHHHHHH---
Q 038890 216 SGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKIT------IASVLSAC--- 283 (569)
Q Consensus 216 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~------~~~ll~~~--- 283 (569)
.++..+|+..++++.+ | +...+..+..++.+.|-...|+++..+-. .-+.+...- ....++.-
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-----~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP-----NLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc-----cccCHHHHHHHHHHHHHHHHhhcccc
Confidence 5666669999999875 4 45677888899999999999998888742 111222111 11111111
Q ss_pred --HccCCH---HHHHHHHHHHHHh-C-CCCcchh----HHHHHHHHHhcCChHHHHHHHhhCCCC----ChhHHHHHHHH
Q 038890 284 --AYLGAI---DHGKWVHGYLRRS-G-LDCDVVI----GTALVDMYGKCGCVERAYGVFKEMPKK----DTLAWTAMISV 348 (569)
Q Consensus 284 --~~~~~~---~~a~~~~~~~~~~-~-~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~ 348 (569)
....++ +.|..-++.+... + .|+.... ..-.+-++...|++.++++.|+.+... ...+-..+..+
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 011223 3444444444442 1 1222222 223456778889999999999999853 34556678899
Q ss_pred HHHcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC----------CCCH---
Q 038890 349 FALNGYGKEAFDTFREMEAEG-----VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV----------EPHV--- 410 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~--- 410 (569)
|...+++++|+.+|..+.... ..++......|.-++...+++++|..+++.+.+.... .|+.
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999987643 1223444578889999999999999999999852210 1221
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
..+..++..+...|++.+|++.++++ ...| |......+...+...|.+.+|++.++.+...+|.+..+....+.++..
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 34456778889999999999999999 4445 888999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCC
Q 038890 489 AGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g 506 (569)
.|+|.+|..+.+.+....
T Consensus 497 l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 497 LQEWHQMELLTDDVISRS 514 (822)
T ss_pred hhhHHHHHHHHHHHHhhC
Confidence 999999999998886643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-17 Score=161.19 Aligned_cols=485 Identities=13% Similarity=0.057 Sum_probs=282.7
Q ss_pred HHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHH
Q 038890 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATN 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~ 86 (569)
+.|...+.+.++.+ |+|.+...--+.+....+++..|..+|...+...+.-.+ .+.-.+...+.++ |+.+.|+.
T Consensus 147 ~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a---D~rIgig~Cf~kl--~~~~~a~~ 220 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKA---DVRIGIGHCFWKL--GMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC---CccchhhhHHHhc--cchhhHHH
Confidence 34444444443443 556666666666666778888888888886665443333 2333334455566 77777666
Q ss_pred HhhcCCC----------------------------------------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHH
Q 038890 87 VFSHIKR----------------------------------------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYK 126 (569)
Q Consensus 87 ~~~~~~~----------------------------------------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~ 126 (569)
.|....+ .|+..-+.|..-|...|++. .+..+.+
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~------~v~~la~ 294 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE------RVWHLAE 294 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH------HHHHHHH
Confidence 6665542 24455555555555566666 6666666
Q ss_pred HHHHCCCC--CCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-
Q 038890 127 QMLCTGIS--PDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R- 201 (569)
Q Consensus 127 ~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~- 201 (569)
.+...... .-..+|-.+.+++-..|+++.|..+|.+..+....-....+-.|...|.+.|+++.+...|+.+.+ |
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 66553210 122345556666666777777777776666654332234444566677777777777777776654 2
Q ss_pred ChhHHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH
Q 038890 202 DVVSWNAMIIGYLRSG----DLDVALDLFRRMKKR---NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI 274 (569)
Q Consensus 202 ~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~ 274 (569)
+..+.-.+...|...+ ..+.|..++.+..++ |...|-.+...+....-+ .++.+|......-...+.++.+.
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHH
Confidence 2334444444444442 334455555444432 333444444444333322 22444433221000223335556
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHh---CCCCcc------hhHHHHHHHHHhcCChHHHHHHHhhCCC---------
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRS---GLDCDV------VIGTALVDMYGKCGCVERAYGVFKEMPK--------- 336 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 336 (569)
..+.+...+...|++..|...|...... ...++. .+--.+...+-..++.+.|.+.|..+.+
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 6666666666667777776666665543 111222 1222233344444455555555554432
Q ss_pred ----------------------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc-
Q 038890 337 ----------------------------KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHVTFVGLLSACAH- 386 (569)
Q Consensus 337 ----------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~- 386 (569)
.++..++.+...+.....+..|..-|+...+.- ..+|..+...|...|..
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 234444444445555555555555444443321 12344454555554432
Q ss_pred -----------cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 038890 387 -----------SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQ 453 (569)
Q Consensus 387 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 453 (569)
.+..++|+++|.++.+.+ +.|...-|.+.-+++..|++.+|..+|... .......+|..+..+|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 134677888888887544 567777788888899999999999999888 22335567888999999
Q ss_pred hcCCHHHHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 454 MHGNVELGEKVAQYLIDLD--PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..|++..|++.|+...+.. .+++.+...|++++.+.|++.+|.+.+.......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999887743 4477889999999999999999999888876644
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-16 Score=153.66 Aligned_cols=475 Identities=12% Similarity=0.056 Sum_probs=342.7
Q ss_pred hhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhh
Q 038890 10 YSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFS 89 (569)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 89 (569)
..+++..-+.+ +.||...+.+++-+...|++..+..+............. ....|..+.++|-.. |+++.|...|.
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~-~aes~Y~~gRs~Ha~--Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI-KAESFYQLGRSYHAQ--GDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhh--ccHHHHHHHHH
Confidence 33444332333 567888888999999999999999998888876421111 113477888888888 99999999998
Q ss_pred cCCCC---C-cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHccC----CcHHHHHHH
Q 038890 90 HIKRS---D-LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC-LTFPFLLKECTKRL----DGLVGASVY 160 (569)
Q Consensus 90 ~~~~~---~-~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~----~~~~a~~~~ 160 (569)
+..+. + +..+--+.+.+...|++. .+...|+...+. .||. .|...|...|+..+ ..+.|..++
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle------~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLE------ESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHH------HHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 77642 2 445566778889999998 999999999884 3654 45555555565554 345566666
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038890 161 GQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS--------NRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK- 231 (569)
Q Consensus 161 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 231 (569)
....+.- ..|...|-.+...+.. ++...++.+|.... ..-+...|.+...+...|+++.|...|.....
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 6665554 3366677766666643 44333355554432 25667888888899999999999999887653
Q ss_pred ------CCh------hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 038890 232 ------RNI------FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI-TIASVLSACAYLGAIDHGKWVHGY 298 (569)
Q Consensus 232 ------~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 298 (569)
++. .+-..+...+-..++++.|.+.|..+.+. -|.-. .|.-++......++..+|...++.
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE------HPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH------CchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 122 12334666777788999999999998732 24433 333333333455778888888888
Q ss_pred HHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHH------------cCChhHHHHH
Q 038890 299 LRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLAWTAMISVFAL------------NGYGKEAFDT 361 (569)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~g~~~~A~~~ 361 (569)
+...+ ..++..+..+...|.+..++..|.+-|..+.+ +|+.+.-.|...|.. .+..++|+++
T Consensus 556 ~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 556 ALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 88764 66677778788899999999888886665543 355555555554432 2456789999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----P 437 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 437 (569)
|.+.+... +-|...-+.+.-+++..|++..|..+|....+.. .....+|-.+.++|...|++..|+++|+.. .
T Consensus 635 y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 635 YGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988753 3366777778888899999999999999999644 245678899999999999999999999987 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH-------------------cCChHHHHHH
Q 038890 438 MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK-------------------AGRFDDVKKT 498 (569)
Q Consensus 438 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~ 498 (569)
-+.+..+...|..++.+.|.+.+|.+.+..+....|.++.+...++.+..+ .+..+.|.++
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999998877666655432 3457888899
Q ss_pred HHHHHHCCCC
Q 038890 499 RNLMKERGIR 508 (569)
Q Consensus 499 ~~~m~~~g~~ 508 (569)
|..|...+-+
T Consensus 792 F~~ls~~~d~ 801 (1018)
T KOG2002|consen 792 FTELSKNGDK 801 (1018)
T ss_pred HHHHHhcCCC
Confidence 9999877655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-16 Score=141.00 Aligned_cols=441 Identities=10% Similarity=0.094 Sum_probs=313.9
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--C------CcccHHH
Q 038890 30 ILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--S------DLYTYNI 101 (569)
Q Consensus 30 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~ 101 (569)
.+++.+.......+|+..|+.+++...-|+.. .+-..+...+.+. .++..|.+.++-... | .+...|.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag--~lkmnigni~~kk--r~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAG--ILKMNIGNIHFKK--REFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCc--eeeeeecceeeeh--hhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34455555567889999999999988766653 4555667788888 889999998876542 2 2345566
Q ss_pred HHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh--------
Q 038890 102 MIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF-------- 173 (569)
Q Consensus 102 li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------- 173 (569)
+.-.+.+.|.+. .|+..|+...+. .||-.+-..|+-++...|+.++..+.|..|+.....||..
T Consensus 282 igvtfiq~gqy~------dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~dd 353 (840)
T KOG2003|consen 282 IGVTFIQAGQYD------DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDD 353 (840)
T ss_pred cCeeEEecccch------hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCC
Confidence 667788999999 999999999884 4888776667766677899999999999998864333221
Q ss_pred HHHHHHHHHHhcCC-----------HHHHHHHHhhcCC----CChhH---H------------------HHHHHHHHhcC
Q 038890 174 VQNSVISLFMACGF-----------VTSARMLFDEMSN----RDVVS---W------------------NAMIIGYLRSG 217 (569)
Q Consensus 174 ~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~----~~~~~---~------------------~~l~~~~~~~g 217 (569)
.-..|+.--.+... .+++.-.--++.. ||-.. | -.-...+.+.|
T Consensus 354 p~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 354 PDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 11122222222211 1222221112221 22110 1 01123467799
Q ss_pred CHHHHHHHHHhcCCCChhHH----HHHHH-HHHh-CCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSW----NSIIT-GFVQ-GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDH 291 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~----~~l~~-~~~~-~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 291 (569)
+++.|++++.-..+.|..+- +.|.- -|.+ -.++..|.+.-+..+. .-.-+......-.......|++++
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln-----~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN-----IDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc-----ccccCHHHhhcCCceeeecCcHHH
Confidence 99999999988876654432 22222 2233 3457777776666542 112334444433444556899999
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP---KKDTLAWTAMISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
|...|++.....-......|+ +.-.+...|++++|++.|-++. ..+..+...+...|-...+...|++++-+....
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 999999998765444444454 3445778899999999997765 367778888889999999999999999876653
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 038890 369 GVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGA 447 (569)
Q Consensus 369 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 447 (569)
++.|...+..|...|-+.|+-.+|.+.+-+-.+- ++-+..+...|...|....-+++|+.+|++. -+.|+..-|..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4556778899999999999999999887665533 3678888888999999999999999999999 77899999999
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 448 LLGGCQ-MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 448 l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
++..|. +.|++++|.++++...+..|.+...+..|++.+...|-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 887764 68999999999999999999999999999988877763
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-14 Score=131.23 Aligned_cols=421 Identities=14% Similarity=0.111 Sum_probs=247.2
Q ss_pred CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH-H--------------
Q 038890 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT-N-------------- 86 (569)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~-~-------------- 86 (569)
|....+-+.++.+. .+|.+.++--+|+.+...|.+.++ .+...|++.-+-.-+.++.-|+ +
T Consensus 113 ~~~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~---kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~ 188 (625)
T KOG4422|consen 113 PLQVETENNLLKMI-SSREVKDSCILYERMRSENVDVSE---KVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS 188 (625)
T ss_pred chhhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCH---HHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc
Confidence 34455667777766 567788888899999998888888 6666665543322001121111 1
Q ss_pred ---------HhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHH
Q 038890 87 ---------VFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGA 157 (569)
Q Consensus 87 ---------~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 157 (569)
++-+...++..+|..||.++++-...+ +|.++|++......+.+..+|+.+|.+-.-..+ .
T Consensus 189 sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~E------RA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 189 SWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLE------RARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred ccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHH------HHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 222223356677888888888887777 888888888777677788888888876443222 6
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH----HHhhcCC----CChhHHHHHHHHHHhcCCHHH-HHHHHHh
Q 038890 158 SVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARM----LFDEMSN----RDVVSWNAMIIGYLRSGDLDV-ALDLFRR 228 (569)
Q Consensus 158 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~----~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 228 (569)
++..+|....+.||..++|+++.+..+.|+++.|.. ++.+|.+ |...+|..+|..+++.++..+ |..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 778888888888888888888888888887766544 3444433 677777777777777766644 3333333
Q ss_pred cCC------------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCC-CCcc---HHHHHHHHHHHHccCCHHHH
Q 038890 229 MKK------------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEM-VKPD---KITIASVLSACAYLGAIDHG 292 (569)
Q Consensus 229 ~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~---~~~~~~ll~~~~~~~~~~~a 292 (569)
+.. .+...|...|..|.+..+.+-|.++-.-... |.... +.|+ ..-|..+....+.....+..
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t-g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT-GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc-CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1333455666666666666666655544421 10111 2222 12234444555555566666
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 293 KWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
...|+.|.-.-+-|+..+...++++..-.|+++-..+++..+..-+ ..-+-+--++++..|......|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp 485 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHP 485 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCC
Confidence 6666666555555666666666666666666665555554433211 0111112223333343333334
Q ss_pred CHH---HHHHHHHHHHccCCHHHH-HHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC
Q 038890 373 NHV---TFVGLLSACAHSGLVEKG-RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-------PMEPD 441 (569)
Q Consensus 373 ~~~---~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~ 441 (569)
+.. -+.....-|. . ++.++ ...-.++. . ........+.+...+.|.|+.++|.+++.-. +..|.
T Consensus 486 ~tp~r~Ql~~~~ak~a-a-d~~e~~e~~~~R~r-~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 486 LTPEREQLQVAFAKCA-A-DIKEAYESQPIRQR-A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CChHHHHHHHHHHHHH-H-HHHHHHHhhHHHHH-h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 322 2222221111 0 11111 11122222 2 2455667778888899999999999988766 33455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
......++....+.++..+|...++-+...+-+
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 555556777778888999999999998776644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-12 Score=124.63 Aligned_cols=443 Identities=12% Similarity=0.077 Sum_probs=264.5
Q ss_pred cChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC--------CCCcccHHHHHHHHhcCC
Q 038890 39 KNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK--------RSDLYTYNIMIRANACKS 110 (569)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~ 110 (569)
..++.|..++....+. ++.++ .++......--.. |+.+...++.++-. .-+...|-.=...|-..|
T Consensus 420 etYenAkkvLNkaRe~-iptd~---~IWitaa~LEE~n--gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDR---EIWITAAKLEEAN--GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCCh---hHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 3344444444444432 33333 4444444444444 55544444444322 012233333333344444
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 038890 111 SETNDTHSGKCLKLYKQMLCTGISP--DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV 188 (569)
Q Consensus 111 ~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 188 (569)
... .+..+....+.-|+.- -..|+..-...|.+.+.++-|..+|...++.-+. +..+|......--..|..
T Consensus 494 sv~------TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 494 SVI------TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred Chh------hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcH
Confidence 444 4444444444444332 1224444445555555555555555555554322 344454444444445555
Q ss_pred HHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchh
Q 038890 189 TSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQS 262 (569)
Q Consensus 189 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 262 (569)
++...+|++... | ....|......+...||+..|..++.+.-+ | +...|-.-+.......+++.|..+|.+..
T Consensus 567 Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar- 645 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR- 645 (913)
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh-
Confidence 555555555544 2 333455555555566666666666666543 2 33456566666666667777777776654
Q ss_pred ccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---Ch
Q 038890 263 SSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DT 339 (569)
Q Consensus 263 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 339 (569)
+..|+...|.--+...--.++.++|.+++++..+. ++.-...|-.+...+-+.++.+.|.+.|..=.+. .+
T Consensus 646 -----~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 646 -----SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred -----ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 23455555555555555566667777777666654 2334455666666666667777777666654432 34
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..|-.+...--+.|..-.|..+|++..-.+. -+...|...|+.-.+.|+.+.|..+..+....+ +.+...|..-|..
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~l 796 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWL 796 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHh
Confidence 5566666666666677777777776665432 255666666777777777777777766666443 4555666666666
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 420 LSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
..+.++-.+..+.+++. +.|+.....+...+.....++.|.+.|.+++..+|++..+|..+-..+.+.|.-++-.+++
T Consensus 797 e~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred ccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 66666666666666665 3466777778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHCC
Q 038890 500 NLMKERG 506 (569)
Q Consensus 500 ~~m~~~g 506 (569)
.+.....
T Consensus 875 ~~c~~~E 881 (913)
T KOG0495|consen 875 KKCETAE 881 (913)
T ss_pred HHHhccC
Confidence 8876643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-13 Score=121.77 Aligned_cols=479 Identities=12% Similarity=0.076 Sum_probs=353.1
Q ss_pred chhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCCh
Q 038890 2 SKKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSL 81 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 81 (569)
|++-...|.+++...+..+ ..+.+....++.+-.++..+..|+.+++..+..-+..+ .++...+.+--.. |++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----qlWyKY~ymEE~L--gNi 157 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----QLWYKYIYMEEML--GNI 157 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----HHHHHHHHHHHHh--ccc
Confidence 3445567888888776666 55777888899999999999999999999998743333 4667777777778 999
Q ss_pred hHHHHHhhcCC--CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHH
Q 038890 82 SYATNVFSHIK--RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASV 159 (569)
Q Consensus 82 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 159 (569)
..|.++|+.=. +|+...|++.|..-.+....+ .|..+|++.+- +.|+..+|......--+.|....|..+
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeie------raR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIE------RARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHH------HHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999998755 799999999999999999999 99999999987 669999999999988899999999999
Q ss_pred HHHHHHh-CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhHHHHHHHHHHhcCCHHHHHHHH------
Q 038890 160 YGQVVKF-GV-CDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R---DVVSWNAMIIGYLRSGDLDVALDLF------ 226 (569)
Q Consensus 160 ~~~~~~~-g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~------ 226 (569)
|...++. |- ..+...+.+....-.++..++.|.-+|+-... | ....|..+...--+-|+.....+..
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9998874 31 11334556666666677888899888876654 2 2445666666555667766555543
Q ss_pred --HhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH-------HHHHHHHHH---HccCCHHH
Q 038890 227 --RRMKKR---NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI-------TIASVLSAC---AYLGAIDH 291 (569)
Q Consensus 227 --~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~ 291 (569)
+.+.+. |-.+|-..++.--..|+.+...++|+... .+++|-.. .|.-+=-++ ....+.+.
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI-----anvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI-----ANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 45677778888888899999999999996 34555321 121111111 35678999
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHH----HhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMY----GKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
+.++++...+. +|....|+..+--.| .++.++..|.+++..... |..-+|..-|..-.+.++++.+..++++.
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999884 566677776554444 477899999999988764 56677888888888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 038890 366 EAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFV 444 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 444 (569)
++.+. -+..+|......-...|+.+.|..+|+-......+......|...|+.=...|.+++|..++++. ...+...+
T Consensus 464 le~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 98643 25678888888788899999999999999865544445677888888888999999999999998 44555557
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHhh----cCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 445 WGALLGGCQ-----MHG-----------NVELGEKVAQYLID----LDPLNH--AFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 445 ~~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|.++..--. +.+ ++..|..+|+++.. .+|... ..+....+.=...|...+...+-..|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 766655432 334 66788999998875 333321 22233333334456555555555555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-12 Score=125.62 Aligned_cols=458 Identities=12% Similarity=0.024 Sum_probs=264.8
Q ss_pred CHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcC---CCCCcccHHHHH
Q 038890 27 TKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHI---KRSDLYTYNIMI 103 (569)
Q Consensus 27 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 103 (569)
.....++.+...|++++|..++.++++..+.. + ..|..|...|-.. |+.+++...+-.. ...|...|..+.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-~---~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRN-P---IAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-h---hhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34456677777899999999999999985433 3 6899999999999 9999998776543 345678888888
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH----HHH
Q 038890 104 RANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN----SVI 179 (569)
Q Consensus 104 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~ 179 (569)
....+.|++. +|.-+|.+.++.. +++...+---...|-+.|+...|...|.++....++.|..-+. ..+
T Consensus 215 dls~~~~~i~------qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 215 DLSEQLGNIN------QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHhcccHH------HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 8888888888 9999999999853 2343344445566778899999999999998876543433222 345
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------
Q 038890 180 SLFMACGFVTSARMLFDEMSN-----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----------------------- 231 (569)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 231 (569)
..+...++-+.|.+.++.... -+...++.++..+.+...++.|......+..
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 567777777888888777654 3445677788888887777777766554421
Q ss_pred ---CChhHHH----HHHHHHHhCCChHHHHHHHHHchhccccCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 038890 232 ---RNIFSWN----SIITGFVQGGRAREALELFQEMQSSSVEEM--VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS 302 (569)
Q Consensus 232 ---~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 302 (569)
++..+|. .++-++.+....+....+..... ... +.-+...|.-+..++...|++..|..++..+...
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~----~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV----EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH----HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 0000010 11112222222222222222222 222 2223444555555555555555555555555554
Q ss_pred CCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHH--------CCCC
Q 038890 303 GLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEA--------EGVR 371 (569)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~ 371 (569)
....+..+|-.+..+|...|.++.|.+.|+.+... +...-..|...+.+.|+.++|.++++.+.. .+..
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 33334445555555555555555555555555432 222233334445555555555555555321 1122
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhH--------------------------------------------------
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMR-------------------------------------------------- 401 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------------------------------------------------- 401 (569)
|+..........+.+.|+.++-..+-..+.
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 222222222222233333222111111000
Q ss_pred ------------HhcCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHhC-C----CCCCH---HHHHHHHHHHHhcCCHH
Q 038890 402 ------------HVYLVEPHV--YHYACMIDILSRAGLFSEAERLIRSM-P----MEPDV---FVWGALLGGCQMHGNVE 459 (569)
Q Consensus 402 ------------~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~~---~~~~~l~~~~~~~~~~~ 459 (569)
...++..+. ..+.-++.++++.+++++|+.+...+ . ..++. ..-...+.++...+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 011111111 23456777888999999999988877 1 12222 12234455667889999
Q ss_pred HHHHHHHHHhhc-----CCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 460 LGEKVAQYLIDL-----DPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 460 ~a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.|...++-++.. +|.-...|+.......+.|+-.--.+++..
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 555556666555555555553333333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-11 Score=118.62 Aligned_cols=462 Identities=10% Similarity=0.013 Sum_probs=315.9
Q ss_pred HHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHH
Q 038890 7 MVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATN 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~ 86 (569)
+.++.+|++..+.+ |.||+..-.-+.+-...|++..|+.+...-.+.- +.+. .++...++. ...+.|..
T Consensus 268 kKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSe---DvWLeaiRL------hp~d~aK~ 336 (913)
T KOG0495|consen 268 KKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSE---DVWLEAIRL------HPPDVAKT 336 (913)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchH---HHHHHHHhc------CChHHHHH
Confidence 45677777774444 6788888888888888888888887776665542 2222 455444443 44455555
Q ss_pred HhhcCCCC----------------------------------CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCC
Q 038890 87 VFSHIKRS----------------------------------DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTG 132 (569)
Q Consensus 87 ~~~~~~~~----------------------------------~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g 132 (569)
+.....+. ++..|...+. ..+.. .|.-++.+..+-
T Consensus 337 vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVe----lE~~~------darilL~rAvec- 405 (913)
T KOG0495|consen 337 VVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVE----LEEPE------DARILLERAVEC- 405 (913)
T ss_pred HHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHh----ccChH------HHHHHHHHHHHh-
Confidence 54443321 2222222221 11122 344444444431
Q ss_pred CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChh
Q 038890 133 ISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--------RDVV 204 (569)
Q Consensus 133 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~ 204 (569)
-|. -.-|.-++++..-++.|..+++...+. ++.+..+|.+....--.+|+.+...+++++-.. -+..
T Consensus 406 -cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 406 -CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred -ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 121 112233444555566666666666554 333555665555555566666666666554322 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIAS 278 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ 278 (569)
.|..=...|-+.|..-.+..+...... .--.+|..-...|.+.+.++-|..+|...++ -++-+...|..
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq-----vfp~k~slWlr 555 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ-----VFPCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-----hccchhHHHHH
Confidence 455555555555555555555554432 1234677777788888888888888888752 23445566666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh
Q 038890 279 VLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYG 355 (569)
Q Consensus 279 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 355 (569)
....--..|..+....+++++...- +-....+-.....+-..|+...|+.++..+-+ .+...|...+.....+.++
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~ 634 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDEL 634 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH
Confidence 6666667788888899999888763 45556667777788888999999999887754 3567888888888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 356 KEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 356 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+.|..+|.+... ..|+...|..-+......++.++|.+++++..+.+ +.-...|..+...+-+.++.+.|.+.|..
T Consensus 635 eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 635 ERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 999999998776 46777777777777777899999999999998765 34457888899999999999999999887
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 436 M-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 436 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
- ..-| ....|..|...--+.|.+-+|..++++.+-.+|.+...|...+++-.+.|+.+.|..+..+..+.
T Consensus 711 G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 711 GTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred ccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 3334 55678888888888999999999999999999999999999999999999999999988887664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-13 Score=122.34 Aligned_cols=402 Identities=14% Similarity=0.069 Sum_probs=276.9
Q ss_pred chhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcC--hHHHH-HHHHHHH-------------------hcCCCCC
Q 038890 2 SKKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKN--MRELK-EIHTQII-------------------KSPCLQT 59 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~a~-~~~~~~~-------------------~~~~~~~ 59 (569)
|++.-+++--++..|..++.|-++.....++.+....++ +.-++ +-|-.+. -.-.+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 455557777788899999999888888888887765543 11111 1111111 1112234
Q ss_pred CchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC----CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC
Q 038890 60 NDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR----SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP 135 (569)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p 135 (569)
+ ..+..+|...|+. ...+.|.+++++... -+..++|.+|.+-+ +. ..-+++.+|....+.|
T Consensus 207 ~---et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~------~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 207 D---ETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS------VGKKLVAEMISQKMTP 271 (625)
T ss_pred c---hhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh------ccHHHHHHHHHhhcCC
Confidence 4 7899999999999 999999999999874 36678888886543 33 4467999999999999
Q ss_pred CcccHHHHHHHHHccCCcHH----HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHhhcCC----------
Q 038890 136 DCLTFPFLLKECTKRLDGLV----GASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTS-ARMLFDEMSN---------- 200 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~---------- 200 (569)
|..|+|+++.+.++.|+++. |.+++.+|++.|+.|+..+|..++..+++.++..+ +..++.++..
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998775 45788899999999999999999999999887643 4444444432
Q ss_pred --CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhCCChHHHHHHHHHchhccccC
Q 038890 201 --RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--------RN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVEE 267 (569)
Q Consensus 201 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (569)
.|..-|...+..|.+..|.+-|.++..-+.. ++ ..-|..+....++....+.-..+|+.|. .+
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV----P~ 427 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV----PS 427 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cc
Confidence 2455677888889899999999888665542 22 2346677888889999999999999998 77
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHH
Q 038890 268 MVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMIS 347 (569)
Q Consensus 268 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 347 (569)
-.-|+..+...++++....+.++-.-+++.+++..|..........++..+++.. ..|+...-..+-.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQV 495 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHH
Confidence 7889999999999999999999999999999988875444444333333333322 0122111111111
Q ss_pred HHHHc-CChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH---HHHHHHHH
Q 038890 348 VFALN-GYGKE-AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA---CMIDILSR 422 (569)
Q Consensus 348 ~~~~~-g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~ 422 (569)
.+.+. -++.+ ....-.+|.+..+. ....+.++-.+.+.|..++|.++|..+.+.+.--|.....+ -+++.-.+
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 11110 11112 22233344444333 34455555567788888888888887754444334444444 55566677
Q ss_pred cCCHHHHHHHHHhC
Q 038890 423 AGLFSEAERLIRSM 436 (569)
Q Consensus 423 ~g~~~~A~~~~~~~ 436 (569)
.+.+..|..+++-|
T Consensus 574 ~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLA 587 (625)
T ss_pred cCCHHHHHHHHHHH
Confidence 77888888888777
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=145.20 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=114.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
.+...+.+.|++++|+++++... ....+| |...|..+...+...++++.|...++++...+ +.++..+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~----~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAA----QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 44667778888888888886543 222133 34444445556667888899999888888765 3356667777777
Q ss_pred HHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
...+++++|..+++..-+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 688999999988876643 456677788888999999999999999987543 3456778888889999999999999
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
..+++..+.. |.+......++..+...|+.+++.++++.. ..+.|+..+..+..++...|+.++|...++++.+..
T Consensus 167 ~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999999654 446788899999999999999988888777 223455678889999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
|.|+.+...++.++...|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=120.91 Aligned_cols=382 Identities=14% Similarity=0.075 Sum_probs=251.1
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 038890 104 RANACKSSETNDTHSGKCLKLYKQMLCTGISPD-CLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLF 182 (569)
Q Consensus 104 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 182 (569)
.-|.++|+++ .|++.|.+.++ ..|| +..|.....+|...|+|+...+--...++.++. -...+..-.+++
T Consensus 123 N~~f~~kkY~------eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 123 NKFFRNKKYD------EAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred hhhhhcccHH------HHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 3445556666 99999999998 5688 677777888888999999998888877776532 244555666777
Q ss_pred HhcCCHHHHHHHHh------hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChh------------------
Q 038890 183 MACGFVTSARMLFD------EMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIF------------------ 235 (569)
Q Consensus 183 ~~~g~~~~A~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~------------------ 235 (569)
-..|++++|+.=+. .....+. ..++.-..+.--...+.+-+..=.. |+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~---~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASI---EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 77788877754211 1111000 0111111111111122222221000 1111
Q ss_pred -----HHHHHHHHHH--hCC---ChHHHHHHHHHchhccccCCCC---ccH------HHHHHHHHHHHccCCHHHHHHHH
Q 038890 236 -----SWNSIITGFV--QGG---RAREALELFQEMQSSSVEEMVK---PDK------ITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 236 -----~~~~l~~~~~--~~g---~~~~a~~~~~~m~~~~~~~~~~---p~~------~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
....+..++. ..+ .+.+|.+.+.+-.... ..... .|. .+......-+.-.|+.-.+...|
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~-~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGS-ESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhh-hhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 1111111111 011 2333333333321000 00000 111 11111112234467888888899
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+...+.. +.+...|-.+..+|....+.++.+..|....+ .++.+|..-.....-.+++++|..-|++.... .|+
T Consensus 350 ~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe 426 (606)
T KOG0547|consen 350 DAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPE 426 (606)
T ss_pred HHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chh
Confidence 9888865 33344477788889999999999999998765 46788998888888899999999999998874 443
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------H
Q 038890 374 -HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD---------V 442 (569)
Q Consensus 374 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------~ 442 (569)
...|..+--+..+.+.+++++..|++.++++ +..+..|+.....+...+++++|.+.|+.. .+.|+ +
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 4566666666678899999999999999776 667899999999999999999999999988 44444 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+-..++..-.+ +++.+|+.+++++++++|....++..|+..-.+.|+.++|+++|++-..
T Consensus 505 lV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 505 LVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222222233 8999999999999999999999999999999999999999999998643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-11 Score=113.51 Aligned_cols=431 Identities=11% Similarity=0.087 Sum_probs=315.2
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHH
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQ 175 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 175 (569)
...|--..+--...++.. +|..+|++.+... ..+...|...+..-.+......|..+++..+..-+..|.. |
T Consensus 73 ~~~WikYaqwEesq~e~~------RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-W 144 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQ------RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-W 144 (677)
T ss_pred HHHHHHHHHHHHhHHHHH------HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-H
Confidence 344444444334445555 9999999998854 3455566667777778899999999999998875554443 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChH
Q 038890 176 NSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLRSGDLDVALDLFRRMK--KRNIFSWNSIITGFVQGGRAR 251 (569)
Q Consensus 176 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 251 (569)
--.+-+--..|++..|.++|++..+ |+...|++.|..-.+.+.++.|..++++.. .|++.+|-.....-.+.|+..
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 3344555567999999999999876 999999999999999999999999999965 689999999999999999999
Q ss_pred HHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc--chhHHHHHHHHHhcCChHHHHH
Q 038890 252 EALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCD--VVIGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 329 (569)
.+..+|...... ...-..+...+.+...--.+...++.|..+|+-+.+.- |.+ ...|..+...--+-|+......
T Consensus 225 ~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 225 LARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 999999987632 00111122333444333355677889999998888753 333 4566666655556676555444
Q ss_pred HH--------hhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HccC
Q 038890 330 VF--------KEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV-------TFVGLLSAC---AHSG 388 (569)
Q Consensus 330 ~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~---~~~~ 388 (569)
.. +.+... |-.+|...+..-...|+.+...++|++.... ++|-.. .|.-+--+| ....
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 222222 5567777888888889999999999999875 555321 121111122 3578
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHH----HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHY----ACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
+.+.+.++++...+ -++-...++ ......-.++.++..|.+++... |.-|-..+|...|..-.+.++++....
T Consensus 381 d~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 381 DVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999998885 223333444 44445556889999999999988 888999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHH
Q 038890 464 VAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLIL 543 (569)
Q Consensus 464 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (569)
++++.++.+|.+..+|...+..=...|+++.|..+|+-..+... .+.|..-| . +.+......++.+++..+.
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpellw---k----aYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA-LDMPELLW---K----AYIDFEIEEGEFEKARALY 530 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHHHHH---H----HhhhhhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999998877654 23354444 2 3344445566777888888
Q ss_pred HHHHH
Q 038890 544 NGLSK 548 (569)
Q Consensus 544 ~~l~~ 548 (569)
+++..
T Consensus 531 erlL~ 535 (677)
T KOG1915|consen 531 ERLLD 535 (677)
T ss_pred HHHHH
Confidence 77754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-13 Score=123.42 Aligned_cols=428 Identities=11% Similarity=0.053 Sum_probs=261.0
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHH-----HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIR-----ANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL 138 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 138 (569)
.+...|.+-|... ..+.+|+..++-+.+.-...-..++. .+.+..++. +|++.|+..++.-...+..
T Consensus 202 svl~nlaqqy~~n--dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fs------kaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 202 SVLFNLAQQYEAN--DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFS------KAIKFYRMALDQVPSINKD 273 (840)
T ss_pred HHHHHHHHHhhhh--HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHH------HHHHHHHHHHhhccccchh
Confidence 4455555555555 55566666665555443333222222 233334444 7777777666642222333
Q ss_pred cHHHHHH----HHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------------
Q 038890 139 TFPFLLK----ECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-------------- 200 (569)
Q Consensus 139 ~~~~ll~----~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------- 200 (569)
+-..++. .+.+.|.++.|...|+...+.. |+..+--.|+-++..-|+.++..+.|.+|..
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 3333333 2456777777777777776653 4544333344444456777777777776643
Q ss_pred --CChhHHHH-----HHHHHHhcC--CHHHHHHHHHhcC----CCChh-------------HHHH--------HHHHHHh
Q 038890 201 --RDVVSWNA-----MIIGYLRSG--DLDVALDLFRRMK----KRNIF-------------SWNS--------IITGFVQ 246 (569)
Q Consensus 201 --~~~~~~~~-----l~~~~~~~g--~~~~A~~~~~~~~----~~~~~-------------~~~~--------l~~~~~~ 246 (569)
|+....+. .+.-+.+.+ +-++++-.--++. .|+.. .|.. -...|.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 12221111 111121111 1222221111111 22110 0111 1234778
Q ss_pred CCChHHHHHHHHHchhccccCCCCccHHHHHHHH--HHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCCh
Q 038890 247 GGRAREALELFQEMQSSSVEEMVKPDKITIASVL--SACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCV 324 (569)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 324 (569)
.|+++.|.++++-..+ ..-+.-...-+.+- ..+..-.++..|.++-+...... .-+......-.+.....|++
T Consensus 432 ~~d~~~aieilkv~~~----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEK----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred ccCHHHHHHHHHHHHh----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 8899999888887762 22222222222222 22222345666766666555432 23333333333444567999
Q ss_pred HHHHHHHhhCCCCChhHHHHHH---HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 325 ERAYGVFKEMPKKDTLAWTAMI---SVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 325 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
++|.+.|++....|...-.+|. ..+-..|+.++|++.|-++..- +..+..++..+...|....+..+|++++....
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999988766544443 4567789999999999887653 34467788888899999999999999998776
Q ss_pred HhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 402 HVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
. -++.|+....-|.+.|-+.|+-..|.+..-+- .. +-+..+..-|..-|....-++.++.+|+++.-++|.-...-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 3 35778899999999999999999999886555 33 34777877777778888888999999999998888865555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
..++.++.+.|++.+|..+++.... .++.+
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hr-kfped 693 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHR-KFPED 693 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH-hCccc
Confidence 5566677889999999999998754 34433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-12 Score=114.41 Aligned_cols=328 Identities=12% Similarity=0.050 Sum_probs=218.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhC
Q 038890 169 CDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNI-FSWNSIITGFVQG 247 (569)
Q Consensus 169 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~ 247 (569)
..|...+-....++.+.|..+.|...|......-+..|.+.+....-.-+.+.+..+.......+. ..--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 334444444445566677777777777776654444555555444444444444444433433211 1112344556666
Q ss_pred CChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHhcCChH
Q 038890 248 GRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL--DCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 325 (569)
.+.+++..-..... ..|++.+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.-....++.
T Consensus 241 ~q~~e~~~k~e~l~----~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLS----SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHH----hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 67777777777776 556666666555566666777888888888888887631 123455555442222211111
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 326 RAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 326 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
---...-.+.+-.+.|...+..-|.-.++.++|...|++..+. .|. ...|+.+..-|...++...|.+-++.+.+..
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 1111112223334556666677777788888888888888774 333 4567777777888888888888888888544
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+.|-..|-.|.++|.-.+.+.-|+-+|++. ..+| |...|.+|..+|.+.++.++|++.|.++...+..+...+..|
T Consensus 395 --p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 395 --PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred --chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 567788888888888888888888888888 6666 677888888888888888888888888888877777888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 038890 483 CDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..|.+.++.++|...+++-++
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888888877755
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-12 Score=125.23 Aligned_cols=344 Identities=15% Similarity=0.109 Sum_probs=223.2
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHH
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDV 221 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 221 (569)
+.+...|+++.|..++.+.++..+. +...|-.|..+|-..|+.+++...+-.... .|..-|-.+.....+.|+++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3344458888888888888887644 666777788888888888888776544432 455677777777777888888
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH----HHHHHHHHHHccCCHHHHHH
Q 038890 222 ALDLFRRMKKR---NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI----TIASVLSACAYLGAIDHGKW 294 (569)
Q Consensus 222 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~ 294 (569)
|.-.|.+..+. +...+-.-+..|-+.|+...|.+.|.++... ..+.|.. +...++..+...++.+.|.+
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL----DPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888777653 2333334456777778888888888877632 1122222 23333445555566666666
Q ss_pred HHHHHHH-hCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 295 VHGYLRR-SGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 295 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
.++.... .+-..+...++.++..|.+...++.+......... +|..-|..- ..++ ..-..+++ ...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-~~~~~~~~--~~~~ 373 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-EEPNALCE--VGKE 373 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-cccccccc--CCCC
Confidence 6665554 22234455566666677776666666665544432 121111000 0000 00000000 0111
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHH
Q 038890 370 VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYL--VEPHVYHYACMIDILSRAGLFSEAERLIRSM-PME--PDVFV 444 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~ 444 (569)
..++... .-+.-++.+....+....+...+. ... +.-++..|.-+.++|...|++.+|+.+|..+ ..+ -+...
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 2333333 122223444455554444554444 333 3345678999999999999999999999999 222 35679
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
|..+..+|...|.+++|.+.|++++...|++..+...|...+.+.|+.++|.+++..+.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-12 Score=122.15 Aligned_cols=246 Identities=10% Similarity=0.034 Sum_probs=129.9
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHH--HHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIA--SVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
.+.|+++.|...+.++.+ ..|+..... .....+...|+++.|...++.+.+.. |.++.....+...|.+.|
T Consensus 129 ~~~g~~~~A~~~l~~A~~------~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 129 QQRGDEARANQHLERAAE------LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHCCCHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 455555555555555431 123322211 11334445555555555555554443 334444555555555555
Q ss_pred ChHHHHHHHhhCCCC---Ch--------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 038890 323 CVERAYGVFKEMPKK---DT--------LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 391 (569)
++++|.+++..+.+. +. .+|..++.......+.+...++++.+-+. .+.+......+..++...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 555555555544432 11 12222222223333444444555544322 2334555666666677777777
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 392 KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
+|..++++..+ . +|+.... ++.+....++.+++++.++.. ...| |...+..+...|.+.+++++|.+.|+++.
T Consensus 281 ~A~~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777766663 2 3444222 222333446777777766666 3344 34456666677777777777777777777
Q ss_pred hcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 470 DLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 470 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 356 ~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776664 3455677777777777777777766543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-11 Score=121.25 Aligned_cols=277 Identities=12% Similarity=-0.008 Sum_probs=218.8
Q ss_pred hcCCHHHHHHHHhhcCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH--HHHHHHHhCCChHHHHHH
Q 038890 184 ACGFVTSARMLFDEMSNR--DVVS-WNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSWN--SIITGFVQGGRAREALEL 256 (569)
Q Consensus 184 ~~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~a~~~ 256 (569)
..|+++.|.+.+....+. ++.. |........+.|+++.|...|.++.+ |+..... .....+...|++++|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 379999999998876652 2333 33334455889999999999999875 3433222 336788999999999999
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcch-------hHHHHHHHHHhcCChHHHHH
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVV-------IGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~ 329 (569)
++++.+ . .+-+......+...|.+.|+++.+..++..+.+.+..++.. .+..++.......+.+...+
T Consensus 176 l~~~~~----~-~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 176 VDKLLE----V-APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHh----c-CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999973 2 24567888889999999999999999999999887543321 23334444445566777788
Q ss_pred HHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 038890 330 VFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV 406 (569)
Q Consensus 330 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 406 (569)
+++.+.+ .++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+.+
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 8887764 47788889999999999999999999998874 4454322 3344456699999999999998766
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
+-|+..+..+...+.+.+++++|.+.|+.. ...|+..++..+...+.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567778899999999999999999999999 77899999999999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=125.47 Aligned_cols=280 Identities=14% Similarity=0.047 Sum_probs=220.5
Q ss_pred CCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHH
Q 038890 217 GDLDVALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGK 293 (569)
Q Consensus 217 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 293 (569)
-+..+|+..|...+. +| ..+...+..+|...+++++|.++|+.+.+. ..-..-+...|...+-.+-+. -+.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh----HHH
Confidence 456788888888654 23 345667888999999999999999998743 222233567777777654321 222
Q ss_pred HHHH-HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 294 WVHG-YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 294 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
..+. .+.+. .+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2222 33333 2667899999999999999999999999998764 457788888888999999999999998765
Q ss_pred CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038890 370 VRPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWG 446 (569)
Q Consensus 370 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 446 (569)
+.|.. ..|..+...|.+.++++.|+-.|+.+.+.. +-+.+....+...+.+.|+.++|+++++++ ..+| |+..-.
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 33332 356667788999999999999999998644 456777888889999999999999999999 4444 666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.-+..+...+++++|+..++++++.-|++..++..++..|.+.|+.+.|+.-|.-+.+...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6777788899999999999999999999999999999999999999999998887766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=130.17 Aligned_cols=253 Identities=15% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcC
Q 038890 142 FLLKECTKRLDGLVGASVYGQVVKFG-VCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSG 217 (569)
Q Consensus 142 ~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g 217 (569)
.+...+...|+++.|.++++...... .+.+...|..+.......|+++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44555667777777777775544433 2334555555566666677777777777777652 23345555555 5677
Q ss_pred CHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 038890 218 DLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWV 295 (569)
Q Consensus 218 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 295 (569)
++++|.+++...-+ ++...+..++..+.+.++++++.++++.+.. ....+.+...|..+...+.+.|+.++|...
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE---LPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777776665532 3444556666667777777777777777542 222345566666666667777777777777
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 296 HGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP---KKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
++++.+.. |.+..+...++..+...|+.+++.+++.... ..|+..|..+..++...|+.++|+.+|++..+.. +.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77776654 4445566666666666666666544444332 2344555555556666666666666666655431 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
|......+..++...|+.++|..+...+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4445555555555666666665555444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-11 Score=116.71 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHhhcCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh--hHHHHHHHHHHhCCChHHHHHHH
Q 038890 185 CGFVTSARMLFDEMSN--RDV-VSWNAMIIGYLRSGDLDVALDLFRRMKK--RNI--FSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
.|+++.|.+.+.+..+ |+. ..+-.......+.|+.+.|...|.+..+ |+. ...-.....+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555554433 221 1222333444455555555555555432 222 12222345555566666666666
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSG 303 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 303 (569)
+.+.+ . -+-+...+..+...+...|+++.+...+..+.+.+
T Consensus 177 ~~l~~----~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 177 DKLLE----M-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHH----h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66542 1 12344455555566666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-10 Score=106.77 Aligned_cols=195 Identities=9% Similarity=0.014 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHH
Q 038890 273 KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVF 349 (569)
Q Consensus 273 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 349 (569)
+.|+.++.+.|+-.++.++|...|++..+.+ +.....++.+.+-|....+...|.+.|+...+ .|-..|..+.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 3455555666666666666666666666554 44455566666666666666666666665543 2445666666666
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEA 429 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 429 (569)
...+.+.-|+-.|++..... +-|...|..|..+|.+.++.++|++.|..... .| ..+...+..|...|-+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 66666666666666655531 22455666666666666666666666666653 22 23445566666666666666666
Q ss_pred HHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 430 ERLIRSM-------P-MEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 430 ~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
...|... + +.|. .....-|..-+.+.+++++|..+......-
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 6655544 1 1121 112222333455566666666555555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-10 Score=108.17 Aligned_cols=440 Identities=12% Similarity=0.011 Sum_probs=287.7
Q ss_pred cChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcC--CCCCcccHHHHHHHHhcCCCCCCCC
Q 038890 39 KNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHI--KRSDLYTYNIMIRANACKSSETNDT 116 (569)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~~~ 116 (569)
.++..|.-+=+.+...+ .+| .-...+++.+.-. |+++.|-.+...- .+.|..........+.+..++.
T Consensus 30 ~~y~~a~f~adkV~~l~--~dp---~d~~~~aq~l~~~--~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~--- 99 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLT--NDP---ADIYWLAQVLYLG--RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWD--- 99 (611)
T ss_pred HhhhHHHHHHHHHHhcc--CCh---HHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---
Confidence 44566655555555443 555 5566677777777 7888887776653 3567777777777777777777
Q ss_pred ChhHHHHHHHH----HHHC---------CCCCCccc----HHH-----HH--HHHHccCCcHHHHHHHHHHHHhCCCCcH
Q 038890 117 HSGKCLKLYKQ----MLCT---------GISPDCLT----FPF-----LL--KECTKRLDGLVGASVYGQVVKFGVCDDV 172 (569)
Q Consensus 117 ~~~~A~~~~~~----m~~~---------g~~p~~~~----~~~-----ll--~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 172 (569)
+|..++.. +..- -+.+|..- -+. ++ ..+....+.++|...|.+.+.. |.
T Consensus 100 ---~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~ 172 (611)
T KOG1173|consen 100 ---QALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DA 172 (611)
T ss_pred ---HHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----ch
Confidence 77777762 2100 01111111 000 01 1233344566666666666543 33
Q ss_pred hHHHHHHHHHHhc-CCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhcCCHHHHHHHH--HhcC--CCChhHHHHHHH
Q 038890 173 FVQNSVISLFMAC-GFVTSARMLFDEMSN-----RDVVSWNAMIIGYLRSGDLDVALDLF--RRMK--KRNIFSWNSIIT 242 (569)
Q Consensus 173 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~~--~~~~~~~~~l~~ 242 (569)
..+.++...-... =...+-+.+|+.+.- .+......+.....-...-+.....- ..+. +.+......-..
T Consensus 173 ~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad 252 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD 252 (611)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence 3333322211111 111122333332110 11111111111110000000000000 0000 124444555566
Q ss_pred HHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.++.+. .|..+.+|-++.-.|.-.|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 788899999999999998642 3566667777777888899888777777777765 3777889999999999999
Q ss_pred ChHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 323 CVERAYGVFKEMPKKD---TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
+..+|+++|.+...-| ...|-.+...|+-.|..+.|+..+...-+. ++-...-+..+..-|.+.++.+.|.++|..
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998876543 468999999999999999999999877653 111222233344567889999999999999
Q ss_pred hHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 400 MRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
..... |.|+..++-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..+|.+.+.+++|+..+++++.
T Consensus 406 A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 406 ALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88554 667788888888888889999999999876 1122 456789999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 471 LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 471 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..|.++.++..++-.|...|+++.|.+.|.+..-
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999987654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=122.71 Aligned_cols=277 Identities=13% Similarity=0.060 Sum_probs=218.1
Q ss_pred CHHHHHHHHhhcCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChHHHHHHH
Q 038890 187 FVTSARMLFDEMSN--RDV-VSWNAMIIGYLRSGDLDVALDLFRRMKK------RNIFSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 187 ~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
+..+|...|.++.. +|+ .....+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+.-. +..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~----Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA----LSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH----HHHH
Confidence 45788888888655 343 4556677889999999999999998875 356678877766543322 2222
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK 337 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 337 (569)
.+-+ ...-+-.+.+|.++.++|.-.++++.|.+.|+++.+.+ +....+|+.+..-+.....+|.|...|+.....
T Consensus 410 aq~L----i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 410 AQDL----IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHH----HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2211 22225668999999999999999999999999998865 446788999999999999999999999999887
Q ss_pred ChhHH---HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH
Q 038890 338 DTLAW---TAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHY 413 (569)
Q Consensus 338 ~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 413 (569)
|+..| .-+...|.+.++++.|+-.|++..+- .|. .+....+...+.+.|+.++|+++++++..-. +.|+..-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhH
Confidence 76655 45678899999999999999998874 444 4556667777889999999999999998433 4455555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
-..+..+...+++++|+..+++. .+.|+ ...+..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66777788899999999999999 55664 56788888999999999999999999999998743
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-11 Score=116.31 Aligned_cols=280 Identities=12% Similarity=0.001 Sum_probs=204.0
Q ss_pred HhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccH--HHHHHHHHHHHccCC
Q 038890 214 LRSGDLDVALDLFRRMKK--RNI-FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK--ITIASVLSACAYLGA 288 (569)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~--~~~~~ll~~~~~~~~ 288 (569)
...|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|.+.+.+.. .. .|+. .........+...|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~----~~--~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA----EL--AGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----Hh--CCcCchHHHHHHHHHHHHCCC
Confidence 458999999999988765 332 334445678889999999999999986 22 2443 233335777888999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHH----HHHHHHHcCChhHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTA----MISVFALNGYGKEAFDT 361 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~~ 361 (569)
++.|...++.+.+.. |.+..+...+...|...|+++.|.+.+..+.+. +...+.. ...+....+..+.+.+.
T Consensus 169 ~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 169 LHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999986 667788899999999999999999999988753 3332321 11122333333334445
Q ss_pred HHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHh
Q 038890 362 FREMEAEGV---RPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH---YACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 362 ~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+..+.+... +.+...+..+...+...|+.++|..++++..+.. |+... ...........++.+.+.+.++.
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 555554321 1367788888899999999999999999999654 44331 11122222345788888888887
Q ss_pred C-CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHH--HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 436 M-PMEP-DV--FVWGALLGGCQMHGNVELGEKVAQY--LIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 436 ~-~~~p-~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
. ...| |. ....++...+.+.|++++|.+.|+. ..+..|++ ..+..++..+.+.|+.++|.+++++...
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 4445 33 5677899999999999999999995 66677765 4577999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-09 Score=102.35 Aligned_cols=511 Identities=12% Similarity=0.116 Sum_probs=282.6
Q ss_pred CHHHHHHHHHhhcChHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHH
Q 038890 27 TKLILRNAIDECKNMRELKEIHTQIIKS-PCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRA 105 (569)
Q Consensus 27 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 105 (569)
-...+.+.+..+|++...+..|+..++. .+..+. .++...+...... |-++.+.+++++..+-++..-+-.|..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~---rIW~lyl~Fv~~~--~lPets~rvyrRYLk~~P~~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHD---RIWDLYLKFVESH--GLPETSIRVYRRYLKVAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhc---cchHHHHHHHHhC--CChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4556777788888899999888888765 344455 6788888888888 888999999999888777778888888
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHCC------CCCCcccHHHHHHHHHccCCcHH---HHHHHHHHHHhCCCCc--HhH
Q 038890 106 NACKSSETNDTHSGKCLKLYKQMLCTG------ISPDCLTFPFLLKECTKRLDGLV---GASVYGQVVKFGVCDD--VFV 174 (569)
Q Consensus 106 ~~~~~~~~~~~~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~ 174 (569)
+...+++. +|-+.+...+... .+.+...|.-+-...++.-+.-. ...+++.++.. -+| ...
T Consensus 179 L~~~d~~~------eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~L 250 (835)
T KOG2047|consen 179 LAKSDRLD------EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFL 250 (835)
T ss_pred HHhccchH------HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHH
Confidence 88899988 8888888876432 12233344444444444333222 22333333332 223 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHh----------------cC------CHHHHHHHHHhcC
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLR----------------SG------DLDVALDLFRRMK 230 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~----------------~g------~~~~A~~~~~~~~ 230 (569)
|++|.+-|.+.|.++.|..+|++... -++.-|..+.+.|+. .| +++-.+.-|+.+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 88899999999999999998887655 222223333333332 11 1222223333332
Q ss_pred CC---------------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc-c-HHHHHHHHHHHHccCCHHHHH
Q 038890 231 KR---------------NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP-D-KITIASVLSACAYLGAIDHGK 293 (569)
Q Consensus 231 ~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~ 293 (569)
.. ++..|..-+ -+..|+..+-...|.+..+.- .....+ . ...|..+.+.|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 10 111222211 123344555555555554221 111111 1 234555556666666666666
Q ss_pred HHHHHHHHhCCCCc---chhHHHHHHHHHhcCChHHHHHHHhhCCC-C--------------------ChhHHHHHHHHH
Q 038890 294 WVHGYLRRSGLDCD---VVIGTALVDMYGKCGCVERAYGVFKEMPK-K--------------------DTLAWTAMISVF 349 (569)
Q Consensus 294 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~ 349 (569)
.+|++..+...+-- ..+|..-.+.-.+..+++.|+++.+.... | +...|...+..-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 66666655433222 33444445555555566666665554431 0 122333333333
Q ss_pred HHcCChhHHHHHHHHHHHCC----------------------------------CCCCHH-HHHHHHHHHH---ccCCHH
Q 038890 350 ALNGYGKEAFDTFREMEAEG----------------------------------VRPNHV-TFVGLLSACA---HSGLVE 391 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~----------------------------------~~p~~~-~~~~ll~~~~---~~~~~~ 391 (569)
-..|-++....+|+++.+.. -.|+.. .|+..+.-+. .....+
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 33344444444444443322 123332 3333333332 234678
Q ss_pred HHHHHHHHhHHhcCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHVY--HYACMIDILSRAGLFSEAERLIRSM--PMEPDV--FVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
.|..+|++..+ |++|... .|......=-+.|....|++++++. ++++.. ..|+..|.-....=.+..-..+|
T Consensus 568 raRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 88888888884 4455432 2222233334567788888888888 555433 47777777655555566777888
Q ss_pred HHHhhcCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHH
Q 038890 466 QYLIDLDPLNH--AFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLIL 543 (569)
Q Consensus 466 ~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (569)
+++++.-|++. ......++.=.+.|.++.|..++.--.+.- .|.+.+-.|-.+ -.....||+.+...+++
T Consensus 646 ekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~-dPr~~~~fW~tw-------k~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 646 EKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC-DPRVTTEFWDTW-------KEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC-CCcCChHHHHHH-------HHHHHhcCCHHHHHHHH
Confidence 88888777643 334556677788899999999887654432 222222233222 22345677755555544
Q ss_pred HHHHHHHHhCCcccCccccccc
Q 038890 544 NGLSKIMKNGGFGQYIRGLSME 565 (569)
Q Consensus 544 ~~l~~~~~~~g~~~~~~~~~~~ 565 (569)
++....+ ..|-.|...+.++
T Consensus 718 -RikRsvq-a~yn~~~~~~a~q 737 (835)
T KOG2047|consen 718 -RIKRSVQ-ATYNTDVNSMAHQ 737 (835)
T ss_pred -HHHHHHH-HhhhhhHHHHHHH
Confidence 5533332 2355555444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-10 Score=102.01 Aligned_cols=274 Identities=15% Similarity=0.059 Sum_probs=141.5
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChHHHHHHH
Q 038890 185 CGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKR----NIFSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
.|++..|++...+-.+ .....|..-..+--+.||.+.+-..+.+..++ +...+-.........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5667777666665444 22233444445555566666666666666543 2233444455566666666666666
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcc-------hhHHHHHHHHHhcCChHHHHHH
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDV-------VIGTALVDMYGKCGCVERAYGV 330 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 330 (569)
.++... -+-++.......++|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...
T Consensus 177 ~~ll~~-----~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 177 DQLLEM-----TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHh-----CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 665421 1334555666666666666666666666666666543332 2333344333333334443334
Q ss_pred HhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 038890 331 FKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVE 407 (569)
Q Consensus 331 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 407 (569)
++..+. .++..-.+++.-+...|+.++|.++.++..+.+..|+. ...-.+.+.++...-++..+.-.+.++
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~-- 325 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP-- 325 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC--
Confidence 444432 24444445555555555555555555555555444441 111233444555555555544444442
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
.++..+..|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 22244555555555555555555555544 445555555555555555555555555555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=102.22 Aligned_cols=291 Identities=12% Similarity=0.063 Sum_probs=158.6
Q ss_pred cCCHHHHHHHHhhcCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhcCC-CChh------HHHHHHHHHHhCCChHHHH
Q 038890 185 CGFVTSARMLFDEMSNRDVVS---WNAMIIGYLRSGDLDVALDLFRRMKK-RNIF------SWNSIITGFVQGGRAREAL 254 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~g~~~~a~ 254 (569)
.++.++|.+.|-+|.+.|..| ..+|.+.|-+.|..|.|+++-+.+.+ ||.. ....|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 556667777776666644333 34555666666666666666665543 3321 2334455566666666666
Q ss_pred HHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 255 ELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 255 ~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
.+|..+. ..+ ..-......++..|-...+|++|...-+++.+.+-.+... .+.
T Consensus 128 ~~f~~L~----de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA------------------- 180 (389)
T COG2956 128 DIFNQLV----DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIA------------------- 180 (389)
T ss_pred HHHHHHh----cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHH-------------------
Confidence 6666664 211 1223344555555555566666655555555543222110 011
Q ss_pred CCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH
Q 038890 335 PKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA 414 (569)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (569)
..|--+...+....+.+.|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+.. ...-..+..
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~ 253 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLE 253 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 11223334444456666777777766654211 22233344556666777777777777776322 122234556
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH---HcC
Q 038890 415 CMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA---KAG 490 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g 490 (569)
.|..+|...|+.++....+.++ ...+....-..+........-.+.|..++.+-+...|.-. .+..|++... .-|
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg 332 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhcccccc
Confidence 6777777777777777777666 3344444444455554555556666666666666666533 3444444332 234
Q ss_pred ChHHHHHHHHHHHHCCCCCC
Q 038890 491 RFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 491 ~~~~A~~~~~~m~~~g~~~~ 510 (569)
++.+-..+++.|....++.+
T Consensus 333 ~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred chhhhHHHHHHHHHHHHhhc
Confidence 57777777888876666655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-10 Score=101.47 Aligned_cols=276 Identities=13% Similarity=0.053 Sum_probs=216.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhcCCHHHHHH
Q 038890 149 KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR----DVVSWNAMIIGYLRSGDLDVALD 224 (569)
Q Consensus 149 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~ 224 (569)
-.|++..|++...+..+.+.. ....|..-+.+--..|+.+.+-.++.+..++ +...+-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 359999999999998888755 3445556667778889999999999998773 34467777788889999999998
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccH-------HHHHHHHHHHHccCCHHHHHH
Q 038890 225 LFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK-------ITIASVLSACAYLGAIDHGKW 294 (569)
Q Consensus 225 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~ 294 (569)
-++++.+ .+.........+|.+.|++..+..++..+. +.+.-.|. .+|..+++-....+..+.-..
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~----ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR----KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH----HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 8877654 567788889999999999999999999998 44444443 467777777766666666666
Q ss_pred HHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 295 VHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
.|+..... ...++.+..+++.-+.++|+.++|.++..+..+. |.. -...-.+.+-++...-++..++-.+. .+-
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 66665443 3566778888999999999999999998887664 333 23334456678888888877776654 223
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 446788889999999999999999997773 3699999999999999999999999998876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-09 Score=99.84 Aligned_cols=222 Identities=11% Similarity=-0.026 Sum_probs=174.1
Q ss_pred HHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG 322 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (569)
.+.-.|+.-.|..-|+...+. . +.+...|--+...|....+.++..+.|..+.+.+ +.++.+|..-...+.-.+
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l----~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKL----D-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhc----C-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 455678889999999998732 2 2222237777778999999999999999999886 677888888888899999
Q ss_pred ChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 323 CVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 323 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
++++|..-|++...- +...|-.+..+..+.+.+++++..|++.++. ++-....|+.....+...++++.|.+.|+.
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999988764 4556666777777889999999999999876 455577899999999999999999999998
Q ss_pred hHHhcCC------CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 400 MRHVYLV------EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 400 ~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
..+.-.. .+.+.+-..++..- -.+++..|+.++++. .+.|. ...|..|...-.+.|+.++|+++|++...+
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8753211 11122222333222 348999999999998 77774 468999999999999999999999998775
Q ss_pred C
Q 038890 472 D 472 (569)
Q Consensus 472 ~ 472 (569)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=96.47 Aligned_cols=212 Identities=11% Similarity=0.081 Sum_probs=134.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChh------HHHHHHHHHHhcCCHHHH
Q 038890 150 RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDVV------SWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 150 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~g~~~~A 222 (569)
..+.++|.+.|-+|.+.... +..+.-+|.+.|-+.|.+|.|+++-..+.+ ||.. ....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46788888888888885533 556666788888889999999998887766 4432 344566778889999999
Q ss_pred HHHHHhcCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc----HHHHHHHHHHHHccCCHHHHHHH
Q 038890 223 LDLFRRMKKRN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD----KITIASVLSACAYLGAIDHGKWV 295 (569)
Q Consensus 223 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 295 (569)
+.+|..+.+.+ ......|+..|-+..+|++|+++-+++.+. +-.+. ...|.-+...+....+++.|..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999988633 345677899999999999999999988742 22222 23345555555566677777777
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh----HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 296 HGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL----AWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
+.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|...|+.++....+..+.+
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77766654 222333333444455555555555554444443321 223333344444444444444444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-10 Score=104.07 Aligned_cols=196 Identities=15% Similarity=0.040 Sum_probs=149.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC 384 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 384 (569)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 34455566666666777777776665543 234566667777788888888888888877653 23455667777788
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGE 462 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 462 (569)
...|++++|...++........+.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888999999888888753222334556777888899999999999999888 4344 4567888888999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 463 KVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988888888888899999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-09 Score=105.96 Aligned_cols=427 Identities=14% Similarity=0.086 Sum_probs=237.4
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC----CcccHHHHHHHHhcCCCCCCCCChhHHH
Q 038890 47 IHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS----DLYTYNIMIRANACKSSETNDTHSGKCL 122 (569)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~~~~~~~A~ 122 (569)
++..+...|+.|+. .+|..++.-||.. |+.+.|- +|..|.-+ +...++.++.+..++++.+ .+.
T Consensus 12 fla~~e~~gi~PnR---vtyqsLiarYc~~--gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E------npk 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNR---VTYQSLIARYCTK--GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE------NPK 79 (1088)
T ss_pred HHHHHHHhcCCCch---hhHHHHHHHHccc--CCCcccc-chhhhhcccccccchhHHHHHhccccccccc------CCC
Confidence 44455566666666 6777777777777 7777766 66666532 3455666666666666555 222
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH-------hCCCC-cHh-------------HHHHHHHH
Q 038890 123 KLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK-------FGVCD-DVF-------------VQNSVISL 181 (569)
Q Consensus 123 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~g~~~-~~~-------------~~~~l~~~ 181 (569)
.|.+.||..|+.+|...||+..-..+-+.+.. .|+.. ... .-..++..
T Consensus 80 -----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 80 -----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred -----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH
Confidence 46666777777777777665442222111111 12110 000 01123333
Q ss_pred HHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHh-cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhCCChHHHHHHH
Q 038890 182 FMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLR-SGDLDVALDLFRRMKK-RNIFSWNSIITGFVQGGRAREALELF 257 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 257 (569)
..-.|-++.+++++..++. .+. +....++-+.. ...+++-..+-....+ +++.+|..++..-.-+|+.+.|..++
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 4445666666666665553 111 11112332222 2234444444444444 67777888888777888888888888
Q ss_pred HHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHH-----------
Q 038890 258 QEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVER----------- 326 (569)
Q Consensus 258 ~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----------- 326 (569)
.+|. ..|++.+.+-|-.++-+ .++...++.+++.|...|+.|+..|+...+..+..+|....
T Consensus 228 ~emk----e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~ 300 (1088)
T KOG4318|consen 228 YEMK----EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGF 300 (1088)
T ss_pred HHHH----HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhh
Confidence 8887 66677776666555544 66777777777777777888877777666555554333111
Q ss_pred -------------HHHHHhhC---------CC-------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC-H
Q 038890 327 -------------AYGVFKEM---------PK-------KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG--VRPN-H 374 (569)
Q Consensus 327 -------------A~~~~~~~---------~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~-~ 374 (569)
|.+.++.- ++ ....+|...+.. ...|.-++++++-..|...- ..++ .
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchH
Confidence 11111111 00 012233322221 22444444444444332210 1111 1
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 038890 375 VTFVGLLS------------------------------------------------------------------------ 382 (569)
Q Consensus 375 ~~~~~ll~------------------------------------------------------------------------ 382 (569)
..|..++.
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 11211111
Q ss_pred --------HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 038890 383 --------ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPDVFVWGALL 449 (569)
Q Consensus 383 --------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~ 449 (569)
.|++.-+..+++..-+... .. .-...|..||+.+......+.|..+.++. ....|..-+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye-~~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYE-DL---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 1111111111111111111 11 01245778888888888899999888888 2334666788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLD---PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRK 509 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (569)
+.+.+.+....+..+++++.+.- |.....+..+.......|+.+...++.+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999998732 4334556667777888999999999999999988865
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-07 Score=91.02 Aligned_cols=289 Identities=15% Similarity=0.131 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChh-------HHHHHHHHHHhCCChHHHHHHHHHchhccc-------cCCCC
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKKRNIF-------SWNSIITGFVQGGRAREALELFQEMQSSSV-------EEMVK 270 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~~ 270 (569)
.|..+...|-..|+.+.|..+|++..+-+-. +|-.....-.+..+++.|+++++....... ..+.+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 4667777888889999999999888764322 344444455566778888888877652110 01111
Q ss_pred c------cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC----CCh-
Q 038890 271 P------DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK----KDT- 339 (569)
Q Consensus 271 p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~- 339 (569)
+ +...|...+..--..|-++....+|+.+.+..+. ++.+.-...-.+-...-++++.++|++-.. |+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1233444555555677888888888888887643 222222233334455668888888887654 332
Q ss_pred hHHHHHHHHHHHc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHhHHhcCCCCC--HhH
Q 038890 340 LAWTAMISVFALN---GYGKEAFDTFREMEAEGVRPNHVTFVGLLSA--CAHSGLVEKGRWCFVMMRHVYLVEPH--VYH 412 (569)
Q Consensus 340 ~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 412 (569)
..|+.-+.-+.+. ...+.|..+|++.++ |++|...-+..|+-+ -...|-...|+.++++.... +++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--VKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCHHHHHHH
Confidence 4577666555542 478999999999998 677765433333322 23568888999999987642 3333 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHH
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEPDVF---VWGALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCDMY 486 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 486 (569)
|+..|.--...=-+.....+|++. ..-|+.. ....+...-.+.|..++|..++....+.-+| +..+|...=..=
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 777765444333344445555555 3345543 3333444567899999999999999986644 677888888888
Q ss_pred HHcCChHHHHH
Q 038890 487 AKAGRFDDVKK 497 (569)
Q Consensus 487 ~~~g~~~~A~~ 497 (569)
.+.|+-+-..+
T Consensus 705 vrHGnedT~ke 715 (835)
T KOG2047|consen 705 VRHGNEDTYKE 715 (835)
T ss_pred HhcCCHHHHHH
Confidence 89998443333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-08 Score=90.19 Aligned_cols=448 Identities=11% Similarity=-0.045 Sum_probs=272.8
Q ss_pred HhhhcCCCCCCCCCC-CCCCHHHHHHHHH----hhcChHHHHHHHHHHHhcCC----------------CCCCchhHHHH
Q 038890 9 SYSLLNSPAKVSPPN-KESTKLILRNAID----ECKNMRELKEIHTQIIKSPC----------------LQTNDHHSLIT 67 (569)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~~ 67 (569)
+.+++.-+...++|. .++....+...+. ....+..+.+-|++++.... .+.+.....-.
T Consensus 22 ~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r 101 (564)
T KOG1174|consen 22 AADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRR 101 (564)
T ss_pred HHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHH
Confidence 344555555555543 3333333333332 23457777777777764321 11122224556
Q ss_pred HHHHHhhcCCCCChhHHHHHhhcCCCC-CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 038890 68 RLLFFCALSVSGSLSYATNVFSHIKRS-DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKE 146 (569)
Q Consensus 68 ~l~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 146 (569)
..+..|-.. ++-+.|......++.. ....-|.|+.-+...|.... ++.--+...+..- | .-...|.+
T Consensus 102 ~~aecy~~~--~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~-----~~vl~ykevvrec--p---~aL~~i~~ 169 (564)
T KOG1174|consen 102 RAAECYRQI--GNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHK-----EAVLAYKEVIREC--P---MALQVIEA 169 (564)
T ss_pred HHHHHHHHH--ccchHHHHHHhcCCccccchhHHHHHHHHHhcccccc-----HHHHhhhHHHHhc--c---hHHHHHHH
Confidence 667777777 8888888888887753 34444555554444443330 2222222222110 0 11111111
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc--CCHHHHHHHH--hhcCC---CChhHHHHHHHHHHhcCCH
Q 038890 147 CTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMAC--GFVTSARMLF--DEMSN---RDVVSWNAMIIGYLRSGDL 219 (569)
Q Consensus 147 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~--~~~~~---~~~~~~~~l~~~~~~~g~~ 219 (569)
..+.+ ...+...-..|-...+.|+.......+.+++.+ ++-..|...+ -+... .|+.....+...+...|+.
T Consensus 170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 11111 011111111222223344444444444444433 4433443333 22222 4666778888889999999
Q ss_pred HHHHHHHHhcCCCChhHH---HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 220 DVALDLFRRMKKRNIFSW---NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 220 ~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
++|+..|++..-.|+.+. ....-.+.+.|+++....+...+... ..-....|..-+.......+++.|..+-
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999988765444332 22233456778888887777776521 1122333333334445667888888888
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
++..+.+ +.+...+-.-..++...|+.++|.-.|+.... .+...|.-++..|...|.+.+|..+-+..... +..+
T Consensus 324 eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~s 401 (564)
T KOG1174|consen 324 EKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNS 401 (564)
T ss_pred HHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcc
Confidence 8777654 44555565566778888999999888887653 36789999999999999999998887766553 3445
Q ss_pred HHHHHHHH-HHH-HccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038890 374 HVTFVGLL-SAC-AHSGLVEKGRWCFVMMRHVYLVEPH-VYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALL 449 (569)
Q Consensus 374 ~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 449 (569)
..+...+. ..| ....--++|.+++++..+. .|+ ....+.+...+.+.|..++++.+++.. ...||...-+.|.
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lg 478 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLG 478 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHH
Confidence 66666553 333 3444567888888887742 454 456677888899999999999999988 7788999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
..+...+.+++|.+.|..+.+++|.+..+.
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999986543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.2e-10 Score=109.53 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=81.4
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 038890 123 KLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRD 202 (569)
Q Consensus 123 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 202 (569)
..+-.+...|+.||..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++......|+.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 57788889999999999999999999999999998 9999988777778889999999888888877665 688
Q ss_pred hhHHHHHHHHHHhcCCHHH
Q 038890 203 VVSWNAMIIGYLRSGDLDV 221 (569)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~ 221 (569)
..+|..|..+|...||...
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 8899999999999999765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-07 Score=89.10 Aligned_cols=439 Identities=11% Similarity=0.068 Sum_probs=262.3
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHH--h
Q 038890 30 ILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRAN--A 107 (569)
Q Consensus 30 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~ 107 (569)
+=++.....+++++|.+.-..++..++ .++ ..+..=+-+.... +++++|+.+.+.-........-.+-.+| .
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~---~a~~cKvValIq~--~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVP-DDE---DAIRCKVVALIQL--DKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCC-CcH---hhHhhhHhhhhhh--hHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 334444455789999999999998874 333 4555555555666 8999999777665422221111134444 4
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhc
Q 038890 108 CKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCD-DVFVQNSVISLFMAC 185 (569)
Q Consensus 108 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~ 185 (569)
+.+..+ +|+..++ |..++.. +...-...|.+.|++++|.++|+.+.+.+.+. +...-..++. .
T Consensus 91 rlnk~D------ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~ 155 (652)
T KOG2376|consen 91 RLNKLD------EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----V 155 (652)
T ss_pred HcccHH------HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----H
Confidence 566667 9998888 3344333 55555566889999999999999998876432 1222222222 1
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHhcC--------CCC-----hh-----HHHHHHHHH
Q 038890 186 GFVTSARMLFDEMSNRDVVSWNAMI---IGYLRSGDLDVALDLFRRMK--------KRN-----IF-----SWNSIITGF 244 (569)
Q Consensus 186 g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~l~~~~ 244 (569)
+-.-.+. +.+........+|..+. -.++..|++.+|+++++... ..| .. .---|...+
T Consensus 156 ~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 156 AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 2122222 34444443344444443 34567899999999998872 111 11 122355677
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHH---HHHccCC-HH-HHHHHHH------------HHHHhCCCCc
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLS---ACAYLGA-ID-HGKWVHG------------YLRRSGLDCD 307 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~---~~~~~~~-~~-~a~~~~~------------~~~~~~~~~~ 307 (569)
...|+.++|..+|...++.. ++|........+ +.....+ ++ .++..++ .+... ..-.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~-----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~ 308 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN-----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQA 308 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc-----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHH
Confidence 88999999999999987432 345433322222 2211111 11 1111111 11110 0011
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCCCC-hhHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPKKD-TLAWTAMISVFAL--NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC 384 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 384 (569)
...-+.++..| .+..+.+.++........ ...+..++....+ ...+..+..++...-+....-........+...
T Consensus 309 i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11123333333 356677777777776543 3444455544332 235777888887766542222234555556677
Q ss_pred HccCCHHHHHHHHH--------HhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCH----HHHHH
Q 038890 385 AHSGLVEKGRWCFV--------MMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPDV----FVWGA 447 (569)
Q Consensus 385 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~----~~~~~ 447 (569)
...|+++.|.+++. .+.+ . .-.+.+...+...+.+.++-+.|.+++.+. ...+.. .++..
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~-~--~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILE-A--KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhh-h--ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 88999999999998 4442 2 233445566777788888877777777665 111222 23344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
+...-.+.|+.++|...++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 444456789999999999999999999999999999999886 677787776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-08 Score=95.88 Aligned_cols=367 Identities=16% Similarity=0.088 Sum_probs=222.3
Q ss_pred CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-ChhHH
Q 038890 132 GISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN----R-DVVSW 206 (569)
Q Consensus 132 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~ 206 (569)
.+.-|...|..+.-++...|+++.+.+.|++....-+. ....|..+...|..+|.-..|..+++.-.. | |+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34456667777777777777777777777777664433 455666677777777777777777766544 2 22222
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhC-----------CChHHHHHHHHHchhcccc
Q 038890 207 NAMIIGYL-RSGDLDVALDLFRRMKK--------RNIFSWNSIITGFVQG-----------GRAREALELFQEMQSSSVE 266 (569)
Q Consensus 207 ~~l~~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~ 266 (569)
-..-..|. +.+..+++++.-.+... .....|..+.-+|... ....++++.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~---~ 473 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ---F 473 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh---c
Confidence 22222222 23445554444333321 1223333333333221 123456666666653 2
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---------
Q 038890 267 EMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--------- 337 (569)
Q Consensus 267 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 337 (569)
.+..|+...|.+ --|+-.++++.|....++..+.+-..+...+..|.-.+...+++.+|+.+.+.....
T Consensus 474 d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred CCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 223333333332 234556677777777777777654566666666666667777777777666544321
Q ss_pred ----------C----hhHHHHHHHHHH------H-----------------cCChhHHHHHHHHH--------HHCC---
Q 038890 338 ----------D----TLAWTAMISVFA------L-----------------NGYGKEAFDTFREM--------EAEG--- 369 (569)
Q Consensus 338 ----------~----~~~~~~li~~~~------~-----------------~g~~~~A~~~~~~m--------~~~~--- 369 (569)
| ..+...++..+- . .++..+|......+ ...|
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 0 011111111111 0 01111111111111 0001
Q ss_pred ------CC--CCH------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 370 ------VR--PNH------VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 370 ------~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+. |+. ..|......+...+..+++...+.+..... +.....|......+...|.+++|.+.|..
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11 221 123344456677788888887777776433 45567788888889999999999999988
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 436 M-PMEPD-VFVWGALLGGCQMHGNVELGEK--VAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 436 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
. .+.|+ +....++...+.+.|+..-|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|....+..
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8 67775 4588899999999999888888 9999999999999999999999999999999999999987754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-10 Score=100.24 Aligned_cols=225 Identities=12% Similarity=-0.021 Sum_probs=158.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcC
Q 038890 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DTLAWTAMISVFALNG 353 (569)
Q Consensus 277 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 353 (569)
..+.++|.+.|.+.+|++.++...+. .|-+.||..|..+|.+..++..|+.+|.+-.+ | ++....-+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34555556666666666655555443 34445555566666666666666666655543 2 2222334455566667
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLI 433 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (569)
+.++|.++|+...+.. +.+.....++...|...++++-|+.+++.+. ..|+ -++..|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777888887777642 2344555566667777788888888888887 4553 56777888888888888888888777
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 434 RSM---PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 434 ~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+. -..|+ ..+|..+.......||+..|.+.|+-+...++++...+++|+-.-.+.|++++|..++....+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 766 22233 45788888888889999999999999999999999999999999999999999999999876643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-08 Score=90.22 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=99.9
Q ss_pred HHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCC
Q 038890 34 AIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKS 110 (569)
Q Consensus 34 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 110 (569)
=+....++..|+.+++.....+-.... .+...+...+-+. |++++|...+..+.+ ++...|-.+.....--|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~---~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEED---SLQLWIAHCYFHL--GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhH---HHHHHHHHHHHhh--ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 344567788888888777755544444 5666677777777 888888888887764 34455555554444456
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCCCCcccHHH-HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 038890 111 SETNDTHSGKCLKLYKQMLCTGISPDCLTFPF-LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVT 189 (569)
Q Consensus 111 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 189 (569)
.+. +|..+-.+. |+...... ++....+.++-++-..+.+.+.+. ..---+|..+..-.-.+.
T Consensus 106 ~Y~------eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 106 QYI------EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred HHH------HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHH
Confidence 666 666665443 33333333 334445666666665555544332 122234444444455677
Q ss_pred HHHHHHhhcCC--CChhHHHHHH-HHHHhcCCHHHHHHHHHhc
Q 038890 190 SARMLFDEMSN--RDVVSWNAMI-IGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 190 ~A~~~~~~~~~--~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~ 229 (569)
+|.++++++.. |.-...|..+ -+|.+..-++-+.+++.-.
T Consensus 169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 88888887765 3333444333 3455555555555555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=106.39 Aligned_cols=229 Identities=16% Similarity=0.178 Sum_probs=147.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHh-----C-CCCcc-hhHHHHHHHHHhcCChHHHHHHHhhCCC--------C--
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRS-----G-LDCDV-VIGTALVDMYGKCGCVERAYGVFKEMPK--------K-- 337 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-- 337 (569)
++..+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++++|..+|+++.. .
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334444455555555555544444432 1 01111 1223345555566666666555555432 1
Q ss_pred -ChhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--CC
Q 038890 338 -DTLAWTAMISVFALNGYGKEAFDTFREMEA-----EGV-RPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYL--VE 407 (569)
Q Consensus 338 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 407 (569)
-..+++.|...|.+.|++++|...+++..+ .|. .|.. ..++.+...|+..+++++|..+++...+... +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 123455556666666666666655555432 122 2222 2456667778888999999988887665432 11
Q ss_pred CC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---
Q 038890 408 PH----VYHYACMIDILSRAGLFSEAERLIRSM---------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID--- 470 (569)
Q Consensus 408 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 470 (569)
++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 367899999999999999999999887 22232 45778899999999999999999998765
Q ss_pred -cCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 471 -LDPL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 471 -~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
.+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344 45678999999999999999999998885
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-09 Score=96.26 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=106.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHH
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFAL 351 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 351 (569)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444332 22334444444555555555555555544432 233344555555566
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 038890 352 NGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAE 430 (569)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (569)
.|++++|...+++.......| ....+..+..++...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665432212 23345555666667777777777777766432 334556666777777777777777
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 431 RLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 431 ~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
..+++. .. +.+...+..+...+...|+.+.|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777766 22 224455556666666777777777776666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-07 Score=92.75 Aligned_cols=434 Identities=13% Similarity=0.077 Sum_probs=232.2
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC--Cccc-HHHHHHHHh
Q 038890 31 LRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS--DLYT-YNIMIRANA 107 (569)
Q Consensus 31 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~ 107 (569)
.+.++...|++++|+..++...+. +.... .+.......+.+. |+.++|..+|..+... +-.. |..+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~---~~~E~rA~ll~kL--g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKL---AVLEKRAELLLKL--GRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHH---HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 456778889999999998776654 33444 6888889999999 9999999999998853 3333 344444442
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 038890 108 CKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG-LVGASVYGQVVKFGVCDDVFVQNSVISLFMACG 186 (569)
Q Consensus 108 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 186 (569)
...... ....+...++|+.+...- |.......+.-.+.....+ ..+..++..+++.|++ .+++.|-..|....
T Consensus 84 ~~~~~~-~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLS-DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred hhcccc-cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 232211 223347788888887642 5555554443333332223 2455677777788865 34556666666444
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCh--hHHHHHHHHHHhCCChHHHHHHHHHchhc
Q 038890 187 FVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK-KRNI--FSWNSIITGFVQGGRAREALELFQEMQSS 263 (569)
Q Consensus 187 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 263 (569)
+.+-...++..... .....+.+.... ..-. .|+. .++..+...|...|++++|++++++....
T Consensus 158 K~~~i~~l~~~~~~-----------~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 158 KAAIIESLVEEYVN-----------SLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHHHHHHHHH-----------hhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 44444444333211 000001100000 0001 1222 23345556666677777777777766521
Q ss_pred cccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh----
Q 038890 264 SVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDT---- 339 (569)
Q Consensus 264 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 339 (569)
.+..+..|..-.+.+-+.|++.+|...++.+.... .-|..+.+..+..+.+.|++++|.+++....+.+.
T Consensus 224 -----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 224 -----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 12235566666666777777777777777766654 45566666666667777777777777666655431
Q ss_pred ------hHH--HHHHHHHHHcCChhHHHHHHHHHHHC-------CC--------CCCHHHHHHHHHHHHccCC-------
Q 038890 340 ------LAW--TAMISVFALNGYGKEAFDTFREMEAE-------GV--------RPNHVTFVGLLSACAHSGL------- 389 (569)
Q Consensus 340 ------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~-------~~--------~p~~~~~~~ll~~~~~~~~------- 389 (569)
..| .....+|.+.|++..|+.-|....+. .+ +.+..+|..+++..-+...
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~ra 377 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRA 377 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHH
Confidence 122 22345566677766666555544321 10 1122233333332211111
Q ss_pred HHHHHHHHHHhHHhcCCCC-----------CHhHHHHHHHHH---HHcCCHHHHHHHHH-----------hC------CC
Q 038890 390 VEKGRWCFVMMRHVYLVEP-----------HVYHYACMIDIL---SRAGLFSEAERLIR-----------SM------PM 438 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~ 438 (569)
...|.+++-.+........ +..--..+..-. .+...-+++...-. .. +.
T Consensus 378 a~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (517)
T PF12569_consen 378 AKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKK 457 (517)
T ss_pred HHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcC
Confidence 1233344433332110000 000001111100 11111111111110 00 12
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 439 EPDVFVWGALLGGCQMHG-NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.||+. ..-+.+.. -.++|.++++-+.+..|++..+|..-...|.+.|++--|.+.+.+
T Consensus 458 D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 458 DDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 23332 12233444 458999999999999999999999999999999999999887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-08 Score=92.78 Aligned_cols=445 Identities=10% Similarity=-0.014 Sum_probs=279.2
Q ss_pred CCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC-------
Q 038890 21 PPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR------- 93 (569)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~------- 93 (569)
...+|..-.-+++++.-.|.++.|..+...-.-. ..+. .....+...+.+. .+++.|..++...+.
T Consensus 45 l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~---~cryL~~~~l~~l--k~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDI---ACRYLAAKCLVKL--KEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhH---HHHHHHHHHHHHH--HHHHHHHHHhcccchhhcchhh
Confidence 3477788889999998888888887666554322 2344 5666666777777 889999999883320
Q ss_pred --CC--------ccc----HHHHHHHHhcCCCCC-CCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHH
Q 038890 94 --SD--------LYT----YNIMIRANACKSSET-NDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGAS 158 (569)
Q Consensus 94 --~~--------~~~----~~~li~~~~~~~~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 158 (569)
.+ ..- -+.-.+.|.-+|..- ...+.++|.+.|.+... .|...|..+..--.. ..-.+.+
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~--~mlt~~E 191 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA--HMLTAQE 191 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH--HhcchhH
Confidence 11 111 112222233333322 22223377777777665 344444443322111 1111112
Q ss_pred HHHHHHHhCCC----CcHhHHHHHHHHHHhcCCHHHHHHHH--hhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 159 VYGQVVKFGVC----DDVFVQNSVISLFMACGFVTSARMLF--DEMS--NRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 159 ~~~~~~~~g~~----~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
.++.+...... -+......+.....-...-+.....- +.+. +.++........-+...+++.+...+++...
T Consensus 192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL 271 (611)
T ss_pred HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence 22222221111 11111111111110000000000000 0011 1344455556666777899999999998887
Q ss_pred CCC---hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc
Q 038890 231 KRN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCD 307 (569)
Q Consensus 231 ~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 307 (569)
+.+ ...+..-|.++...|+..+-.-+=.++++ ..|-...+|-++.-.|...|...+|.+.|.+....+ +.-
T Consensus 272 e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-----~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~f 345 (611)
T KOG1173|consen 272 EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-----LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTF 345 (611)
T ss_pred hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH-----hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccc
Confidence 643 34555666788888888887777777752 245567888888888888899999999998877654 223
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSA 383 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 383 (569)
...|-.+...|.-.|..|.|...|....+ ..-..+.-+..-|.+.++.+.|.+.|.+... +.| |+..++-+.-.
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVV 423 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhhe
Confidence 45677888889999999999888876543 1222233355567888999999999988776 444 45556655555
Q ss_pred HHccCCHHHHHHHHHHhHHhcC-CC----CCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYL-VE----PHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 456 (569)
....+.+.+|..+|+.....-. +. .-..+++.|..+|.+.+.+++|+..++.. -.+.|..++.++.-.+...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 5667889999999887762110 01 13356889999999999999999999988 33447889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+++.|++.|.++..+.|++..+-..|..+.
T Consensus 504 nld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 504 NLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred ChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999876666555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-10 Score=97.49 Aligned_cols=230 Identities=13% Similarity=0.053 Sum_probs=194.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
+.+.++|.+.|.+.+|.+.|+.-++ -.|-+.||..+-++|.+..++..|+.++.+-.+. .|.++.......+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 4688899999999999999998763 3577889999999999999999999999988775 36666666778888
Q ss_pred HHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
+...++.++|.++|+.+.+. ++.....+...|.-.++.+-|+..|+++++.|+. +...|+.+.-+|...++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999999988764 5555666677788899999999999999999976 7788899999999999999999
Q ss_pred HHHHHhHHhcCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 395 WCFVMMRHVYLVEPH--VYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
.-|+...... -.|+ ..+|-.+.....-.|++.-|.+.|+-. ....+...++.|.-.-.+.|++++|..++..+..
T Consensus 379 ~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9998887432 2344 467888999999999999999999987 3333567899999999999999999999999999
Q ss_pred cCCCCh
Q 038890 471 LDPLNH 476 (569)
Q Consensus 471 ~~p~~~ 476 (569)
..|.-.
T Consensus 458 ~~P~m~ 463 (478)
T KOG1129|consen 458 VMPDMA 463 (478)
T ss_pred hCcccc
Confidence 988743
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-09 Score=106.60 Aligned_cols=257 Identities=13% Similarity=-0.028 Sum_probs=181.9
Q ss_pred ChhHHHHHHHHHHh-----CCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHH---------ccCCHHHHHHHHH
Q 038890 233 NIFSWNSIITGFVQ-----GGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACA---------YLGAIDHGKWVHG 297 (569)
Q Consensus 233 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~ 297 (569)
+...|...+.+-.. .+.+++|...|++..+ ..|+ ...+..+..++. ..+++++|...++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 34445555554321 2346789999999873 2343 445555554443 2345889999999
Q ss_pred HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038890 298 YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH 374 (569)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 374 (569)
++.+.+ +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~ 405 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTR 405 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 998876 66778888888999999999999999998764 3 4667888899999999999999999999885 4443
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHH
Q 038890 375 -VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVF-VWGALLG 450 (569)
Q Consensus 375 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~ 450 (569)
..+..++..+...|++++|...++++.+.. +| ++..+..+..++...|++++|...+.++ ...|+.. ..+.+..
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~ 483 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYA 483 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 233334445666899999999999887443 34 4556778888999999999999999988 4555544 4445555
Q ss_pred HHHhcCCHHHHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 451 GCQMHGNVELGEKVAQYLIDL---DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+...| +.|...++.+.+. .+.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 566666 4777777776653 3444433 44556667777777766 7776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-08 Score=93.96 Aligned_cols=403 Identities=14% Similarity=0.127 Sum_probs=262.2
Q ss_pred CCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHC
Q 038890 55 PCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT 131 (569)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~ 131 (569)
.+..++ .+|..|.-+...+ |+++.+-+.|++... .....|+.+-..+...|... .|+.+++.-...
T Consensus 318 ~~qnd~---ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s------~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 318 KFQNDA---AIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDS------KAVNLLRESLKK 386 (799)
T ss_pred hhcchH---HHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccch------HHHHHHHhhccc
Confidence 455677 8999999999999 999999999998774 34577888888899999988 999999887764
Q ss_pred CCCCCcccHHHHH-HHHH-ccCCcHHHHHHHHHHHHh--CC--CCcHhHHHHHHHHHHhcC-----------CHHHHHHH
Q 038890 132 GISPDCLTFPFLL-KECT-KRLDGLVGASVYGQVVKF--GV--CDDVFVQNSVISLFMACG-----------FVTSARML 194 (569)
Q Consensus 132 g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~g-----------~~~~A~~~ 194 (569)
.-.|+..+-..++ +.|. +.+..+++.++-.++++. +. ......|..+.-+|...- ...++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 3224444433333 4454 457888888887777762 21 123445555555554321 23456677
Q ss_pred HhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccC
Q 038890 195 FDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEE 267 (569)
Q Consensus 195 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (569)
+++..+ .|..+...+.--|+..++.+.|.+...+..+ .+...|..|.-.+...+++.+|+.+.+.... +.
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~---E~ 543 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE---EF 543 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---Hh
Confidence 777754 3333333344557778899999988877653 4677899999999999999999999988753 11
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH---------------------hCC-------CCcchhHHHHHHHHH
Q 038890 268 MVKPDKITIASVLSACAYLGAIDHGKWVHGYLRR---------------------SGL-------DCDVVIGTALVDMYG 319 (569)
Q Consensus 268 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~ 319 (569)
| -|......-+..-...++.+++......+.. .|. .....++..+.....
T Consensus 544 ~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 G--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred h--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 1 1111111111111223333333332222211 010 011222222222111
Q ss_pred hcC---ChHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 038890 320 KCG---CVERAYGVFKEMPKKD------TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLV 390 (569)
Q Consensus 320 ~~g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 390 (569)
..+ ..+..+..+.....++ ...|......+.+.++.++|...+.+.... .+-....|......+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhh
Confidence 111 1111111111111222 234666677788889999999888877664 233456677777778889999
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER--LIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
++|.+.|....... +.++.+..++..++.+.|+..-|.. ++.++ .+.| +...|..+...+.+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999998887533 4457888999999999998887777 88888 6666 67899999999999999999999999
Q ss_pred HHhhcCCCCh
Q 038890 467 YLIDLDPLNH 476 (569)
Q Consensus 467 ~~~~~~p~~~ 476 (569)
.+.++++.+|
T Consensus 779 aa~qLe~S~P 788 (799)
T KOG4162|consen 779 AALQLEESNP 788 (799)
T ss_pred HHHhhccCCC
Confidence 9999887765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-08 Score=96.51 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhc----C-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVY----L-VEPH-VYHYACMIDILSRAGLFSEAERLIRSM--------PMEP 440 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p 440 (569)
.+++.|...|...|++++|.++++++.... + ..+. ...++.+...|.+.+...+|.++|.+. +..|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 356666666666777777766666655322 1 1111 345566777777777777777766665 3345
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 441 DV-FVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 441 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+. .+|..|...|...|+++.|+++.+.+..
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 54 5899999999999999999999988764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-07 Score=88.85 Aligned_cols=101 Identities=11% Similarity=0.155 Sum_probs=74.8
Q ss_pred CCCHhHH--HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 407 EPHVYHY--ACMIDILSRAGLFSEAERLIRSM-PMEPDVF-VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 407 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+|....| -.++..+-+.|+++.|..+++.. +-.|+.. .|..=.+.+...|++++|..+++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4555444 45677788888999998888887 6566654 454555667788899999999999888887665444466
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 483 CDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
+.-..++++.++|.++.......|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 6777788888888888888877765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-09 Score=105.38 Aligned_cols=228 Identities=11% Similarity=-0.061 Sum_probs=171.9
Q ss_pred ccHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHH---------hcCChHHHHHHHhhCCC
Q 038890 271 PDKITIASVLSACA-----YLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYG---------KCGCVERAYGVFKEMPK 336 (569)
Q Consensus 271 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 336 (569)
.+...|...+++.. ..+++++|...+++..+.. |.+...+..+..+|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34555555555532 1235678999999998764 344556666655544 23458899999998765
Q ss_pred ---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhH
Q 038890 337 ---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-VYH 412 (569)
Q Consensus 337 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 412 (569)
.+...+..+...+...|++++|+..|++..+.+ +.+...+..+..++...|++++|...++...+.. |+ ...
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~ 408 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAA 408 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhh
Confidence 366788888888999999999999999999853 2245677888889999999999999999998643 43 333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM--PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
+..++..+...|++++|+..+++. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 344455577789999999999887 22354 445677788888999999999999999888888888888888888888
Q ss_pred CChHHHHHHHHHHHHC
Q 038890 490 GRFDDVKKTRNLMKER 505 (569)
Q Consensus 490 g~~~~A~~~~~~m~~~ 505 (569)
| ++|...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 4888888877543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-06 Score=84.76 Aligned_cols=438 Identities=13% Similarity=0.039 Sum_probs=256.1
Q ss_pred hhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCCCC
Q 038890 37 ECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKSSET 113 (569)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 113 (569)
..+.+...+...+.+++..+.... +.....-.+... |+.++|......-.+ .+.+.|..+.-.+-...++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHge----slAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGE----SLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccch----hHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence 346677777777777774333333 333333333444 888999988887665 45678888877666667777
Q ss_pred CCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 038890 114 NDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSAR 192 (569)
Q Consensus 114 ~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 192 (569)
+|+..|..... +.||.. .+.-+--.-++.|+++........+.+..+. ....|..++.++.-.|+...|.
T Consensus 93 ------eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 93 ------EAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred ------HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 456554 4443433346778888888888888776533 5567778888888889999888
Q ss_pred HHHhhcCC-----CChhHHHH------HHHHHHhcCCHHHHHHHHHhcCCC--ChhH-HHHHHHHHHhCCChHHHHHHHH
Q 038890 193 MLFDEMSN-----RDVVSWNA------MIIGYLRSGDLDVALDLFRRMKKR--NIFS-WNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 193 ~~~~~~~~-----~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
.+++...+ ++...+.. ........|..+.|.+.+...... |-.. -..-...+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 88776654 34433322 234456688888888887766542 2222 2344567888899999999999
Q ss_pred HchhccccCCCCccHHHHHHHHHHHH-ccCCHHHHH-HHHHHHHHhCCCCcchhHHHHHHHHHhcCC-hHHHHHHHhhCC
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACA-YLGAIDHGK-WVHGYLRRSGLDCDVVIGTALVDMYGKCGC-VERAYGVFKEMP 335 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 335 (569)
.++. ..||..-|...+..+. +..+.-++. .+|....+. .|.......+--....... .+..-.++....
T Consensus 244 ~Ll~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 244 RLLE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 8873 2466666655544333 233333333 555554432 1111110111000111111 222222333322
Q ss_pred CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHH----CC----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHH
Q 038890 336 KK-DTLAWTAMISVFALNGYGKEAFDTFREMEA----EG----------VRPNH--VTFVGLLSACAHSGLVEKGRWCFV 398 (569)
Q Consensus 336 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 398 (569)
+. -+.++..+.+.|-.....+-..++...+.. .| -+|.. .|+..++..+-..|+++.|..+++
T Consensus 316 ~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 316 SKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred hcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 22 223334444333222222111111111111 11 13444 355566777888899999998888
Q ss_pred HhHHhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-
Q 038890 399 MMRHVYLVEPH-VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL- 474 (569)
Q Consensus 399 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~- 474 (569)
... .+ .|+ +..|..-.+.+...|++++|..++++. .+ .||...-..-..-..+.++.++|.+++....+.+-.
T Consensus 396 ~AI-dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 396 LAI-DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHh-cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 888 33 354 356666678888889999999988888 33 345444435555566788888888888877664421
Q ss_pred --C------hhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 475 --N------HAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 475 --~------~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
+ ..+...=+.+|.+.|++.+|++=|.
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 1 1112233567778887777765433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-09 Score=88.04 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
+...+..+|...|+...|..-+++.++. .|+ ..++..+...|.+.|+.+.|.+-|+...... +.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 3455677888889999999999888875 344 4678888888889999999999998888543 4556788888888
Q ss_pred HHHcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 420 LSRAGLFSEAERLIRSMPMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
+|..|++++|...|++.-..| -..+|..+..+..+.|+++.|...|++..+.+|..+.....+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 899999999999998882222 2457888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 038890 496 KKTRNLMKERGI 507 (569)
Q Consensus 496 ~~~~~~m~~~g~ 507 (569)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=75.62 Aligned_cols=50 Identities=26% Similarity=0.512 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888864
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-07 Score=82.51 Aligned_cols=404 Identities=11% Similarity=0.014 Sum_probs=190.2
Q ss_pred CChhHHHHHhhcCCC------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 038890 79 GSLSYATNVFSHIKR------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLD 152 (569)
Q Consensus 79 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 152 (569)
.++..|..+++.-.. .++..| +...+.+-|+++ +|+..|.-+.+.. .|+......|.-...-.|.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~------~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYE------EALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHH------HHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 455566655554331 122233 223455667777 7777777776643 3444444444444445566
Q ss_pred cHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038890 153 GLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK- 231 (569)
Q Consensus 153 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 231 (569)
+.+|..+-... +.++..-..+...-.+.|+-++-..+-..+... ..--.++....-..-.+++|++++.++..
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666654332 112223333444455566655555544444331 12223344444444556777777777664
Q ss_pred -CChhHHHHH-HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHH--------------
Q 038890 232 -RNIFSWNSI-ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWV-------------- 295 (569)
Q Consensus 232 -~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-------------- 295 (569)
|+....|.- .-+|.+..-++-+.++++-.++ .++.++...+..+....+.=+-..|..-
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~-----q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR-----QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH-----hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 333334433 3355666666666666655542 1222233333322222221111111111
Q ss_pred HHHHHHhCC------------CC-----cchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcC-----
Q 038890 296 HGYLRRSGL------------DC-----DVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNG----- 353 (569)
Q Consensus 296 ~~~~~~~~~------------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 353 (569)
.+.+.+.++ -| -+.....|+-.|.+.+++.+|..+.+++...++.-|-.-...++..|
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 111111110 00 01122234445677777777777777776555544433333333333
Q ss_pred --ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 038890 354 --YGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAE 430 (569)
Q Consensus 354 --~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (569)
+..-|.+.|.-.-+.+..-|. ..--++..++.-..+++..+.++..+.. +-...|. .--.+..+++..|.+.+|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~-Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDD-FNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcch-hhhHHHHHHHHhcChHHHH
Confidence 233444444433333322221 1122233344444566666666666663 3222222 2234566667777777777
Q ss_pred HHHHhC-CCC-CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhcC-CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 431 RLIRSM-PME-PDVFVWGAL-LGGCQMHGNVELGEKVAQYLIDLD-PLN-HAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 431 ~~~~~~-~~~-p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++|-.+ +-+ .|..+|.++ .++|.+.+.++.|..++ ++.+ |.+ ......++.-|.+++.+=-|.+.|+.+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 776666 211 244444443 34455666666655443 3322 221 223344555666667666666666666554
Q ss_pred CC
Q 038890 506 GI 507 (569)
Q Consensus 506 g~ 507 (569)
..
T Consensus 491 DP 492 (557)
T KOG3785|consen 491 DP 492 (557)
T ss_pred CC
Confidence 43
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-07 Score=82.90 Aligned_cols=300 Identities=14% Similarity=0.095 Sum_probs=203.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHhCC
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMI---IGYLRSGDLDVALDLFRRMKKRNIFSWNSI---ITGFVQGG 248 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g 248 (569)
.--+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-|.+..+..+..+.+- ...+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 334666777788888888888888887776666654 357777888888877777764332222222 34678888
Q ss_pred ChHHHHHHHHHchhccccCCCCccHH----------HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKI----------TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.+++|..-|+.+++.....+...+.. .....+..+...|+...++.....+.+.. +.+...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 88888888888874432222221111 12233455667888999999888888764 67788888888999
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH----HHHH---------HH
Q 038890 319 GKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT----FVGL---------LS 382 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l---------l~ 382 (569)
...|++..|+.-++...+ .+...+.-+-..+...|+.+.++...++.++ +.||... |..| +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999887766543 4667777777788888999999988888877 4666532 2111 11
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMH 455 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 455 (569)
.....+++.++....+...+. .|. ...+..+-.++...|++.+|++...+. .+.|| ..++.--..+|.--
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 223445666666666666532 233 123345556677778888888887777 66665 66777777778777
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..++.|+.-|+.+.+.++++..+-.
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHH
Confidence 8888888888888888887765443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-06 Score=79.16 Aligned_cols=283 Identities=11% Similarity=0.035 Sum_probs=209.3
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchh
Q 038890 232 RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKIT-IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVI 310 (569)
Q Consensus 232 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (569)
.|+.....+...+...|+.++|+..|++.+. +.|+..+ .....-.+...|+.+....+...+.... ..+...
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~------~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC------ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh------CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 4777889999999999999999999999762 3344322 2222333467888888888877776543 223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPKKD---TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAH 386 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 386 (569)
|..-+.......++..|+.+-++..+.+ ...+-.-...+...|+.++|.-.|+..... .| +...|..|+.+|..
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHh
Confidence 3333444556678999999988877644 444544456788889999999999987763 43 56899999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMI-DILS-RAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGE 462 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~ 462 (569)
.|.+.+|...-+...+.. +.+..+.+.+. ..+. ....-++|..+++.. .+.|+- ...+.+...|...|..+.++
T Consensus 381 ~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 999999988877776544 45566665553 3322 223457899999887 778875 46777888899999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHH
Q 038890 463 KVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLI 542 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (569)
.++++.....|+. .....|++.+...+.+.+|.+.|...... +|+.+..++-
T Consensus 459 ~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---------------------------dP~~~~sl~G 510 (564)
T KOG1174|consen 459 KLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ---------------------------DPKSKRTLRG 510 (564)
T ss_pred HHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------------------------CccchHHHHH
Confidence 9999999988874 57889999999999999999999876542 3355677778
Q ss_pred HHHHHHHHHhC
Q 038890 543 LNGLSKIMKNG 553 (569)
Q Consensus 543 ~~~l~~~~~~~ 553 (569)
+.++.++|++.
T Consensus 511 l~~lEK~~~~~ 521 (564)
T KOG1174|consen 511 LRLLEKSDDES 521 (564)
T ss_pred HHHHHhccCCC
Confidence 88888888743
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=75.21 Aligned_cols=50 Identities=30% Similarity=0.644 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc
Q 038890 232 RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY 285 (569)
Q Consensus 232 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~ 285 (569)
||+.+||.+|++|++.|++++|.++|++|. ..|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~----~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK----KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHcC
Confidence 567777777777777777777777777777 66777777777777777653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.2e-08 Score=89.87 Aligned_cols=218 Identities=10% Similarity=-0.028 Sum_probs=142.5
Q ss_pred CChHHHHHHHHHchhccccCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 248 GRAREALELFQEMQSSSVEEMVKPD--KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
+..+.++.-+.+++.. ....|+ ...|..+...+...|++++|...|++..+.. +.+...++.+...+...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~---~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILAS---RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHcc---ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4556666666666521 112222 3456666677778888888888888887765 556778888888888888888
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 326 RAYGVFKEMPK--K-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 326 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
.|...|+...+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|.....
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888887754 2 4567777888888889999999999888874 44433222222234456788999988876553
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSE--AERLIRSM-PM----EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
.. +|+...+ .+.. ...|+... +.+.+.+. .. .| ....|..+...+...|++++|+..|+++.+.+|+
T Consensus 194 ~~--~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 KL--DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hC--CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22 3332222 2222 23444433 33333222 11 12 2357888899999999999999999999999975
Q ss_pred Ch
Q 038890 475 NH 476 (569)
Q Consensus 475 ~~ 476 (569)
+.
T Consensus 269 ~~ 270 (296)
T PRK11189 269 NF 270 (296)
T ss_pred hH
Confidence 43
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-06 Score=86.33 Aligned_cols=210 Identities=13% Similarity=0.167 Sum_probs=148.4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--CcchhHHHH---------------------------HHHHHhc
Q 038890 271 PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD--CDVVIGTAL---------------------------VDMYGKC 321 (569)
Q Consensus 271 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l---------------------------~~~~~~~ 321 (569)
-|+...+..+.++...+-+.+-.++++++.-.+-. .+...-+.| .......
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 35555666677777778888888888876643211 111112222 2233344
Q ss_pred CChHHHHHHHhhCCC-------------------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 038890 322 GCVERAYGVFKEMPK-------------------------KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376 (569)
Q Consensus 322 g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 376 (569)
+-+++|..+|++... ..+..|..+..+-.+.|...+|++-|-+. -|...
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 557778888776542 14567999999999999999998887543 26678
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 456 (569)
|.-++..+.+.|.+++-.+++...+++. -.|.+ -+.|+-+|.+.++..+.++++. -||......+..-|...|
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKV-REPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhh
Confidence 9999999999999999999998887443 24444 4579999999999988877765 478888888888899999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.++.|.-+|.. ...|..|+..+...|.+..|...-++
T Consensus 1209 ~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1209 MYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888877765 34566777777777777776654443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-07 Score=79.00 Aligned_cols=386 Identities=12% Similarity=0.047 Sum_probs=234.7
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH-
Q 038890 99 YNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN- 176 (569)
Q Consensus 99 ~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 176 (569)
+.+.+..+.+..++. .|++++..-.++. | +....+.|..+|....++..|...|+++-..- |...-|.
T Consensus 13 ftaviy~lI~d~ry~------DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl 82 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYA------DAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL 82 (459)
T ss_pred hHHHHHHHHHHhhHH------HHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH
Confidence 556666667777777 9999998888754 5 55666777777888899999999999987754 3332222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHH--HHhcCCHHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChHH
Q 038890 177 SVISLFMACGFVTSARMLFDEMSN-RDVVSWNAMIIG--YLRSGDLDVALDLFRRMK-KRNIFSWNSIITGFVQGGRARE 252 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 252 (569)
--...+.+.+.+.+|+++...|.. ++...-..-+.+ .-..+|+..+..++++.+ +.+..+.+.......+.|+++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 123445678899999999988877 333222222222 335789999999999998 4667777778888889999999
Q ss_pred HHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcch---------------------hH
Q 038890 253 ALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVV---------------------IG 311 (569)
Q Consensus 253 a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~ 311 (569)
|++-|+...+ ..|..| ...|+..+ +..+.++.+.|.+...++.++|+...+. .-
T Consensus 163 AvqkFqaAlq---vsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQ---VSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHh---hcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999874 444444 34565544 4567789999999999998877542211 01
Q ss_pred HHHH-------HHHHhcCChHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038890 312 TALV-------DMYGKCGCVERAYGVFKEMPKK-----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVG 379 (569)
Q Consensus 312 ~~l~-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 379 (569)
..++ ..+.+.|+++.|.+.+-.|+.+ |++|...+.-.-. .+++.+..+-+.-+.+.+. -...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 1222 2345778888888888888753 6666555433222 2444444444454555433 23567777
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCC-CCHhHHHHHHHHHH-HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVE-PHVYHYACMIDILS-RAGLFSEAERLIRSMPMEPDVFVWGALLGGC-QMHG 456 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~~ 456 (569)
++-.||+..-++.|-.++.+-.. .... .+...|+ |+++++ ..-..++|.+-++...-......-...+..- .+..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888777755431 1111 2233333 333333 3345566655444431000000000111110 1111
Q ss_pred CHH----HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 457 NVE----LGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 457 ~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+-+ .+++-+++..+.. ..+....++.|.+..++..+.++|+.-.+.-
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 211 1222222322222 2245566677888899999999998776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-08 Score=92.76 Aligned_cols=212 Identities=13% Similarity=0.059 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCCc--chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHH
Q 038890 287 GAIDHGKWVHGYLRRSG-LDCD--VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFD 360 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 360 (569)
+..+.+..-+.++.... ..|+ ...+..+...|...|++++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 1222 35577888899999999999999998764 367889999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 038890 361 TFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--P 437 (569)
Q Consensus 361 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 437 (569)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+.. |+..........+...+++++|...|.+. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999874 454 5677888888899999999999999998543 43322222223345678899999999765 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 438 MEPDVFVWGALLGGCQMHGNVELGEKVAQYLI-------DLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 438 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
..|+...+ . ......|+...+ +.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.+.
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33433222 2 222345555443 2444444 34466678899999999999999999999999987653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-07 Score=93.71 Aligned_cols=255 Identities=14% Similarity=0.101 Sum_probs=148.0
Q ss_pred HHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc--
Q 038890 244 FVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC-- 321 (569)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 321 (569)
+...|++++|++.+..-. ..+......+......+.+.|+.++|..+|..+.+.+ |.+..-|..+..+....
T Consensus 14 l~e~g~~~~AL~~L~~~~-----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNE-----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHCCCHHHHHHHHHhhh-----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345555555555554431 1122223333444455555555555555555555554 33333333333333111
Q ss_pred ---CChHHHHHHHhhCCCCCh--hHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 322 ---GCVERAYGVFKEMPKKDT--LAWTAMISVFALNGYG-KEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 322 ---g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.+.+...++|+++...-+ .....+.-.+.....+ ..+...+..+...|+++ +|..+-..|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 134444555554433111 1111111111111112 23445556666666543 33334344444444444444
Q ss_pred HHHHhHHhc-------------CCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 038890 396 CFVMMRHVY-------------LVEPHVY--HYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNV 458 (569)
Q Consensus 396 ~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 458 (569)
++....... .-+|... ++..+...|-..|++++|++++++. ...|+ +..|..-...+...|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 544443221 1134443 4466678888999999999999987 66675 56788888889999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 459 ELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 459 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.+|.+.++.++++++.|...-+-.+..+.++|++++|.+++......+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999999999888888888899999999999999998877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-07 Score=79.23 Aligned_cols=197 Identities=11% Similarity=0.022 Sum_probs=115.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC
Q 038890 278 SVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGY 354 (569)
Q Consensus 278 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 354 (569)
.+.-.|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++... .+..+.|....-+|..|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 33444555555555555555555543 34445555555556666666666666655432 244455555555666666
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 038890 355 GKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLI 433 (569)
Q Consensus 355 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 433 (569)
+++|...|++......-|. ..+|..+.-|..+.|+.+.|...|++..+.. +........+.......|++..|..++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666666665432222 2456666666666677777777776666432 233445556666666677777777666
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 434 RSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 434 ~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
+.. +..++...+...|..-...||.+.+.++=.++.+..|.+..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 666 33466666666666666677777777766666666666543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=96.89 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=168.3
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFD 360 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 360 (569)
.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+- +......|...|...|.-..|..
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56677777777777777665 566777888888888777777777777766543 55666677777888888888888
Q ss_pred HHHHHHHCCCC-----C---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 038890 361 TFREMEAEGVR-----P---NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 361 ~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
.|+..+....+ + +...-.. ..+.....+....++|-++....+..+|+.++..|.-.|--.|++++|++.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887654211 0 0000000 122223344556677777776776668888999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 433 IRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 433 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
|+.+ .++| |..+||.|...++...+.++|+..|.+++++.|.-.++...|+-.|...|.|++|.+.|-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9998 7777 56799999999999999999999999999999999999999999999999999999988776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-06 Score=78.90 Aligned_cols=116 Identities=9% Similarity=-0.043 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--------hC-CCCCCHHHHHHHHHHHHhcCCHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIR--------SM-PMEPDVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~~~~~ 459 (569)
.+..+..++....+.+. .....+...++......|+++.|++++. .. .+.-.+.+...+...+.+.++-+
T Consensus 356 ~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCc
Confidence 46777777777764431 1124566677888899999999999998 33 33334455566777788888888
Q ss_pred HHHHHHHHHhhc----CCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 460 LGEKVAQYLIDL----DPLN---HAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 460 ~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.|..++..++.. .+.. ...+..++..-.+.|+-++|..+++++.+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 888888888762 2222 233455566667889999999999999763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=9e-08 Score=88.19 Aligned_cols=249 Identities=11% Similarity=0.075 Sum_probs=155.5
Q ss_pred HHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC
Q 038890 213 YLRSGDLDVALDLFRRMKKR----NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA 288 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 288 (569)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++. . +-.|.......+...+...++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~----~-~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIK----K-SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-----T-TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhc----c-CCChhHHHHHHHHHHHhCccc
Confidence 334566666665444 2111 1223445667777778766544 3332 2 225666666555555544444
Q ss_pred HHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLD-CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
-+.+..-++........ .+..+.......+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444433333222 23333333445566778888888888765 5566677788888999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C
Q 038890 368 EGVRPNHVTFVGLLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-D 441 (569)
Q Consensus 368 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 441 (569)
. ..| .+...+..++.. .+.+..|..+|+++...+ ++++.+.+.+..+....|++++|.+++.+. ...| +
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 4 333 344445554432 346889999999987544 578888888889999999999999988887 4444 5
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCChh
Q 038890 442 VFVWGALLGGCQMHGNV-ELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 477 (569)
..++..++.+....|+. +.+.+++.++....|.++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 56777777777777777 7788888888888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-06 Score=81.40 Aligned_cols=236 Identities=10% Similarity=0.001 Sum_probs=157.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH-----
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG----- 311 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----- 311 (569)
...+.+...+..+++.|.+-+.... .. .-+..-++....+|...|.+..+........+.|- ....-+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~----el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak 299 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKAL----EL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAK 299 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH----hH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHH
Confidence 5567777888888888888888876 22 24444456666778888888877777766665542 111222
Q ss_pred --HHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC
Q 038890 312 --TALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSG 388 (569)
Q Consensus 312 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~ 388 (569)
..+..+|.+.++++.+...|.+...+... -....+....+++....+...- +.|.. .-...-...+.+.|
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 22344666777888888888775432111 1112223344445444444333 22332 12222255678889
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
++..|...|.++.+.. +.|...|....-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++.-..+++.|.+.|+
T Consensus 373 dy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988554 667889999999999999999998877776 44554 3455555666667778999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHH
Q 038890 467 YLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 467 ~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+..+.+|.+..+...+.+++..
T Consensus 451 eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHH
Confidence 9999999988877777776665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-07 Score=84.66 Aligned_cols=372 Identities=12% Similarity=0.056 Sum_probs=228.3
Q ss_pred CCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHhcCCHHHHH
Q 038890 114 NDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDD-VFVQNSVISLFMACGFVTSAR 192 (569)
Q Consensus 114 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~ 192 (569)
..++.+.|+.+|.+.+.-. ++|...|+.-..+++..|+++.|.+=-..-++.. |+ ...|+....++.-.|++++|.
T Consensus 14 s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHH
Confidence 3567888899998888743 2366677788888888899888877666666654 44 456777888888888999999
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHH-HHHHH------hcC-CC------ChhHHHHHHHHHHhC--------
Q 038890 193 MLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVA-LDLFR------RMK-KR------NIFSWNSIITGFVQG-------- 247 (569)
Q Consensus 193 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A-~~~~~------~~~-~~------~~~~~~~l~~~~~~~-------- 247 (569)
..|.+-.+ | +...++-+..++. .+.+ .+.|. ... .| ....|..++..+-+.
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 98888776 3 3345555665551 1111 11111 000 00 111233333322211
Q ss_pred --CChHHHHHHHHHch-----hccc---cCCCCc------------c----------HHHHHHHHHHHHccCCHHHHHHH
Q 038890 248 --GRAREALELFQEMQ-----SSSV---EEMVKP------------D----------KITIASVLSACAYLGAIDHGKWV 295 (569)
Q Consensus 248 --g~~~~a~~~~~~m~-----~~~~---~~~~~p------------~----------~~~~~~ll~~~~~~~~~~~a~~~ 295 (569)
.+...+...+.... ..+. ..+..| | ..-...+.++..+..++..+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11122222221110 0000 001111 0 01234455566666777777777
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh---HHHH-------HHHHHHHcCChhHHHHHHHHH
Q 038890 296 HGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL---AWTA-------MISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~-------li~~~~~~g~~~~A~~~~~~m 365 (569)
+....... -+..-++....+|...|.+..+...-....+.... -|+. +..++.+.++++.|+..|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77776654 45555666777778888777777666654443211 1222 233555567778888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH
Q 038890 366 EAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DV 442 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 442 (569)
......|+.. .+....+++....+...- +.|.. .-...-...+.+.|++..|+..|.++ ...| |.
T Consensus 325 Lte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 325 LTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 5543333221 122333444443333321 22332 11222356678999999999999999 4456 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..|....-+|.+.|.+..|+.-.+..++++|+....|..=+.++.-..+|++|.+.|.+..+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999876644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-06 Score=82.82 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=58.6
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
.....|.+|..+++.+.+.. .-..-|..+...|...|+++.|.++|-+.. .++-.|..|.+.|+|+.|.++-.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 33445555555555444432 122234444455555555555555554322 23334455555555555555444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 364 EMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 364 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
+.. |.......|..-..-+-..|++.+|.+++-.+. .|+. .|..|-+.|..+..+.+..+.
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 332 122222333333333444455555544443332 2322 234444555555555444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-06 Score=83.03 Aligned_cols=193 Identities=14% Similarity=0.090 Sum_probs=120.9
Q ss_pred hcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC-------------CC-cccHHHHH
Q 038890 38 CKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR-------------SD-LYTYNIMI 103 (569)
Q Consensus 38 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~-------------~~-~~~~~~li 103 (569)
-|+++.|-+..+-+... .++..+.+++.+. .+.+-|.-.+-.|.+ ++ ...--+.+
T Consensus 741 iG~MD~AfksI~~IkS~---------~vW~nmA~McVkT--~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKSD---------SVWDNMASMCVKT--RRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHhhh---------HHHHHHHHHhhhh--ccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 36777776666655543 6888889998888 888877777766652 21 11222222
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 038890 104 RANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFM 183 (569)
Q Consensus 104 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 183 (569)
...-|..+ +|..+|.+..+. ..|=+.|...|.+++|.++-+.--+.-+ ..+|.....-+-
T Consensus 810 --AieLgMlE------eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 810 --AIELGMLE------EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLE 869 (1416)
T ss_pred --HHHHhhHH------HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHH
Confidence 24455555 888888887763 3344556677888888777553322111 234444555566
Q ss_pred hcCCHHHHHHHHhhcCC-----------------------CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------
Q 038890 184 ACGFVTSARMLFDEMSN-----------------------RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--------- 231 (569)
Q Consensus 184 ~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 231 (569)
..++.+.|++.|++... +|...|.-....+-..|+.+.|+.+|.....
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C 949 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC 949 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe
Confidence 67788888888776532 3445555566666678888888888876642
Q ss_pred ---------------CChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 232 ---------------RNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 232 ---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
.|......|.+.|-..|++.+|...|.+.+
T Consensus 950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 233445566677777777777777776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-06 Score=82.57 Aligned_cols=256 Identities=12% Similarity=0.056 Sum_probs=158.2
Q ss_pred HHHHHHHH--HhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHC-CC-------
Q 038890 64 SLITRLLF--FCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT-GI------- 133 (569)
Q Consensus 64 ~~~~~l~~--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~-g~------- 133 (569)
.+-..++. +|.-- |+.+.|.+-.+.++ +...|..|.+.|.+.++.+ -|.-.+-.|... |.
T Consensus 727 ~TRkaml~FSfyvti--G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLD------VAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 727 STRKAMLDFSFYVTI--GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLD------VAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred HHHHhhhceeEEEEe--ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhcccc------HHHHhhhhhhhhhhHHHHHHHH
Confidence 45555554 45556 99999988777764 5678999999999998888 776666666432 10
Q ss_pred -CCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHH
Q 038890 134 -SPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDVVSWNAMII 211 (569)
Q Consensus 134 -~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~ 211 (569)
.|+ .+=..+.-.....|-+++|+.+|++.++.+ .|=+.|-..|.+++|.++-+.=.. .=..||.....
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 122 122222222346677888888887776532 334556677888888877554322 12235666666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHH
Q 038890 212 GYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDH 291 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 291 (569)
.+-..+|.+.|++.|++...+--..+..|.. ++.....+.+.+ -|...|......+-..|+.+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~----------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRK----------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhc----------cchHHHHHHHHHHhcccchHH
Confidence 6667778888888887765443333322221 222223333333 233555556666667777888
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
|+.+|..+++ |-++++..|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|.+..
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8777776654 345666667777777777776542 355556667777777778777777777543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-08 Score=90.53 Aligned_cols=245 Identities=10% Similarity=0.048 Sum_probs=170.6
Q ss_pred HHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc
Q 038890 242 TGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC 321 (569)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (569)
+-+.-.|++..++.-.+ .. ......+......+.+++...|+.+.+ +.++.... +|.......+...+...
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~----~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK----SFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH----TSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTS
T ss_pred HHHHHhhhHHHHHHHhh-cc----CCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCc
Confidence 44566799999987666 33 222234456667788899999987754 34444443 66666666666655554
Q ss_pred CChHHHHHHHhhCCC-C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 322 GCVERAYGVFKEMPK-K----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 322 g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
++-+.+..-+++... + +..........+...|++++|++++... .+.......+..+.+.++++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 566677766655442 2 2222222234456679999999988642 3567777788999999999999999
Q ss_pred HHHhHHhcCCCCCHhHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 397 FVMMRHVYLVEPHVYHYACMIDILS----RAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
++.+.+ . ..|. +...+..++. -.+.+.+|..+|+++ ...+++.+++.+..++...|++++|++++.++.+
T Consensus 154 l~~~~~-~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQ-I--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHC-C--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHh-c--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999984 2 3343 3334444433 234689999999999 5567889999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHC
Q 038890 471 LDPLNHAFYVNLCDMYAKAGRF-DDVKKTRNLMKER 505 (569)
Q Consensus 471 ~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 505 (569)
.+|.++.++.+++.+....|+. +.+.+++.++...
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999999988 6677888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-07 Score=78.65 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=117.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC
Q 038890 346 ISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL 425 (569)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (569)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 3457778888776555433221 11 01223667778888888877554 6788999999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGC-QMHGN--VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++.+.+|.++.++..++..+.+.|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998 5556 666777777764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHHCCC
Q 038890 501 LMKERGI 507 (569)
Q Consensus 501 ~m~~~g~ 507 (569)
++.+..-
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-06 Score=80.90 Aligned_cols=194 Identities=12% Similarity=-0.011 Sum_probs=96.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHc
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGV-RPNH--VTFVGLLSACAH 386 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~ 386 (569)
.+...+...|++++|...+++..+ .+...+..+...+...|++++|+..+++...... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 334445555555555555555432 1234445555555556666666666655554311 1121 223345555566
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHH-H--HHHHHHHHcCCHHHHHH------HHHhC-CCCCCHHHHHHHHHHHHhcC
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHY-A--CMIDILSRAGLFSEAER------LIRSM-PMEPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~l~~~~~~~~ 456 (569)
.|++++|..+++.........+..... + .++.-+...|....+.. ..... ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 666666666666654211101111111 1 12222222332221111 11111 10111222234556677888
Q ss_pred CHHHHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 457 NVELGEKVAQYLIDLDPL---------NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.+.|...++.+....-. ........+.++.+.|++++|.+.+......+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888888888887652211 23334556667889999999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-06 Score=79.56 Aligned_cols=192 Identities=12% Similarity=0.010 Sum_probs=90.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC-----C--hhHHHHHHHHH
Q 038890 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK-----D--TLAWTAMISVF 349 (569)
Q Consensus 277 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~li~~~ 349 (569)
..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++.... + ...|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 334444555555555555555555543 333444555555555666666666655554431 1 11233455556
Q ss_pred HHcCChhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHccCCHHHHHHH---HHHhHHh-cCCCCCHhHHHHHHHHHH
Q 038890 350 ALNGYGKEAFDTFREMEAEGV-RPNHVTF-V--GLLSACAHSGLVEKGRWC---FVMMRHV-YLVEPHVYHYACMIDILS 421 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~ 421 (569)
...|++++|+.++++...... .+..... + .++.-+...|....+..+ ....... .+ ............++.
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~ 275 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALA 275 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHh
Confidence 666666666666666543211 1111111 1 122222233322222222 1111100 00 011111124555666
Q ss_pred HcCCHHHHHHHHHhC--CCCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 422 RAGLFSEAERLIRSM--PMEP---D------VFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~--~~~p---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
..|+.+.|...++.+ .... . .........++...|+.+.|.+.+..+..
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777766 0011 1 11122222335678888888888887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-05 Score=88.36 Aligned_cols=326 Identities=10% Similarity=-0.006 Sum_probs=211.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----C--h--hHHHHHHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----R----N--I--FSWNSIITGF 244 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~~ 244 (569)
.....|+++.+...++.+.. .+..........+...|++++|..++..... . + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556788887777777642 2333334455566778999999988876531 1 1 1 1222334556
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CC--cchhHHHHHHHH
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGL---DC--DVVIGTALVDMY 318 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 318 (569)
...|++++|...+++..... ..+..+ .....+.+...+...|+++.|...+.+.....- .+ .......+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 78999999999999876310 111000 113345566667889999999999888765311 11 123445667788
Q ss_pred HhcCChHHHHHHHhhCCC-------CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 038890 319 GKCGCVERAYGVFKEMPK-------KD----TLAWTAMISVFALNGYGKEAFDTFREMEAE--GVRPN--HVTFVGLLSA 383 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~ 383 (569)
...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999998876542 11 123444556677789999999999887542 11122 2344455667
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHY-----ACMIDILSRAGLFSEAERLIRSMPM-E-PDV----FVWGALLGGC 452 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~ 452 (569)
....|+++.|...+........-......+ ...+..+...|+.+.|..++..... . ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999988875421111111111 1122445668999999999877721 1 111 1234566778
Q ss_pred HhcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 453 QMHGNVELGEKVAQYLIDLD------PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
...|++++|...++++.+.. +....+...++.++.+.|+.++|...+.+..+..-
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 88999999999999988742 12335677888999999999999999999987653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.6e-06 Score=84.15 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=113.1
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 326 RAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 326 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
.|...+....+ .+...|+.|.-. ...|++.-|...|-+-.... +-...+|..+.-.+....+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555554432 466677776655 55567766666666554432 22455777777778888899999999988874
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-------PMEPDVFVWGALLGGCQMHGNVELGEKVAQ--------- 466 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------- 466 (569)
-. +.+...|-.........|+.-++..+|..- +-.|+...|..........|+.++-+...+
T Consensus 879 Ld--P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 LD--PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred cC--chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 22 345566666666666778888888877762 334555555555555556666655444333
Q ss_pred -HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 467 -YLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 467 -~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
+.....|+...+|...+....+.+.+.+|.+...+.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334456888888888888888888888888877665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-06 Score=80.19 Aligned_cols=261 Identities=13% Similarity=0.196 Sum_probs=175.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHcc
Q 038890 209 MIIGYLRSGDLDVALDLFRRMKKRNIF--SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYL 286 (569)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~ 286 (569)
.+.+......|.+|+.+++.+...++. -|..+...|...|+++.|.++|.+.- .++-.+..|.+.
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhcc
Confidence 345556688899999999988865544 36778889999999999999998753 345667789999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
|+|+.|.++-.+. .|.......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++.++-.
T Consensus 805 ~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred ccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 9999998876654 34345566677777778889999999999999888875 3677888899998888877643
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----
Q 038890 367 AEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDV---- 442 (569)
Q Consensus 367 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~---- 442 (569)
... -..|...+..-+...|+...|...|-+..+ |.+-+..|...+.|++|..+-+.-|-. |.
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~-n~~k~v 943 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGA-NAEKHV 943 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccc-cHHHHH
Confidence 211 124556666777788888888877765542 455666777777777777766654211 11
Q ss_pred -HHH-------------------HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 443 -FVW-------------------GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 443 -~~~-------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
..| ..-+...+..+.++-|.++-+-..+.. .+.+...++..+...|++++|-+-+-+.
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHH
Confidence 111 111111233444444444444333322 2345566777778889999987766555
Q ss_pred HHC
Q 038890 503 KER 505 (569)
Q Consensus 503 ~~~ 505 (569)
.+.
T Consensus 1022 ikl 1024 (1636)
T KOG3616|consen 1022 IKL 1024 (1636)
T ss_pred hhc
Confidence 443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-05 Score=71.14 Aligned_cols=345 Identities=10% Similarity=0.008 Sum_probs=225.4
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhH-HHHHHHHHH
Q 038890 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVS-WNAMIIGYL 214 (569)
Q Consensus 138 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~ 214 (569)
.-..-+.+.+...|++..|+.-|...++.++. +-.++-.-...|...|+-.-|+.-+.++.+ ||-.. -..-...+.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 33445566677778888888888777664322 222222344567778887777777777665 44321 112234567
Q ss_pred hcCCHHHHHHHHHhcCCCCh------h----------H--HHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHH
Q 038890 215 RSGDLDVALDLFRRMKKRNI------F----------S--WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITI 276 (569)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~~------~----------~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~ 276 (569)
+.|.++.|..-|+.+.+.++ . . ....+..+.-.|+...|+.....+++ -.+.|...+
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-----i~~Wda~l~ 192 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-----IQPWDASLR 192 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-----cCcchhHHH
Confidence 88888888888888764211 1 1 12234456778999999999998863 236788888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh------HHHHH-----
Q 038890 277 ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL------AWTAM----- 345 (569)
Q Consensus 277 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~l----- 345 (569)
..-..+|...|.+..|+.-++..-+.. ..+..++-.+...+...|+.+.++...++..+-|+. .|-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 889999999999999998888877765 445556666778888899999999888887764322 22221
Q ss_pred ----HHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 346 ----ISVFALNGYGKEAFDTFREMEAEGVRPNHV---TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 346 ----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
+......++|.++++..+..++........ .+..+-.++...+++-+|++.-.+..... +.|+.++.--..
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHH
Confidence 223455688999999988888754332222 33445566777899999999988887432 334888888899
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
+|.-..+++.|+.-|+.. .+.++..-.. ...+.|.++.+..- ....|-.|+ --+...-.+..+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~r---------eGle~Akrlkkqs~-----kRDYYKILG--VkRnAsKqEI~K 413 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAR---------EGLERAKRLKKQSG-----KRDYYKILG--VKRNASKQEITK 413 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHhc-----cchHHHHhh--hcccccHHHHHH
Confidence 999999999999999988 5555432110 11223333222211 123444443 344556667778
Q ss_pred HHHHHHHCCC
Q 038890 498 TRNLMKERGI 507 (569)
Q Consensus 498 ~~~~m~~~g~ 507 (569)
.+++|..+-.
T Consensus 414 AYRKlAqkWH 423 (504)
T KOG0624|consen 414 AYRKLAQKWH 423 (504)
T ss_pred HHHHHHHhcC
Confidence 8888877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=76.62 Aligned_cols=304 Identities=14% Similarity=0.096 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHH-HHHHHHhC
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSNR---DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSWNS-IITGFVQG 247 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~ 247 (569)
-+++.+..+.+..++.+|.+++....++ +....+.+..+|-...++..|-..++++.. |...-|.. -...+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3556666667788888888887766652 445667777788888888888888888764 33333332 23566778
Q ss_pred CChHHHHHHHHHchhccccCCCCccHHHHHHHHHH--HHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 248 GRAREALELFQEMQSSSVEEMVKPDKITIASVLSA--CAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
+.+..|+++...|. . .|+...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+++
T Consensus 92 ~i~ADALrV~~~~~----D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 92 CIYADALRVAFLLL----D---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred cccHHHHHHHHHhc----C---CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 88888888888775 2 1222221112222 234455555555555543221 2333333344445566666
Q ss_pred HHHHHHhhCCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHccCCHHHHHHHH
Q 038890 326 RAYGVFKEMPKK----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA----CAHSGLVEKGRWCF 397 (569)
Q Consensus 326 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~ 397 (569)
.|.+-|+...+- +...|+..+ ++.+.|+++.|++...++.++|++-... +++-+.. -...|+. ..+.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccch---HHHH
Confidence 666666655442 233444333 3334556666666666666655542111 1100000 0000000 0000
Q ss_pred HHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 398 VMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
.. .-+..+|.-...+.+.|+++.|.+.+.+| ..+.|+.|+..+.-. -..+++....+-+.-+.+++|
T Consensus 237 ~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 237 QS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 00 00122333334456778888888888888 233466666554432 234556666677777777788
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 474 LNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 474 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
-.+.++..++-.|++..-++-|..++-+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 7778888888888888888888776654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.5e-07 Score=93.26 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=172.4
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVT 376 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 376 (569)
|.....|-..|......++.++|++++++.... -...|.+++..-..-|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 555677888899999999999999999887642 3457888888777788888999999998874 222456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP---DVFVWGALLGGC 452 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 452 (569)
|..|...|.+.+.+++|.++++.|.++++ -....|...+..+.+.++-+.|..++.++ ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999998886 66788999999999999999999999988 3333 344566667777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
++.|+.+++..+|+......|.....|+.+++.-.+.|+.+.++.+|+++...++.+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8999999999999999999999999999999999999999999999999999988753
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-06 Score=85.56 Aligned_cols=233 Identities=14% Similarity=0.094 Sum_probs=183.1
Q ss_pred CCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038890 303 GLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS 382 (569)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 382 (569)
+.+|-...-..+.+.+...|-...|..+|++. ..|...+.+|+..|+..+|..+..+..+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35666677788899999999999999999975 4788889999999999999999988777 4788999999988
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 460 (569)
......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777888998888776532 1122333334578999999999876 5555 56789999999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHH
Q 038890 461 GEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELV 540 (569)
Q Consensus 461 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (569)
|.+.|......+|++...|+++..+|.+.|+-.+|...+++..+.+..+ .--| . .+.--...-++.++++
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~---w~iW---E----Nymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH---WQIW---E----NYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC---Ceee---e----chhhhhhhcccHHHHH
Confidence 9999999999999999999999999999999999999999998887442 2222 2 1222223455788999
Q ss_pred HHHHHHHHHHHhCCcccCccc
Q 038890 541 LILNGLSKIMKNGGFGQYIRG 561 (569)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~~~~ 561 (569)
+...++. .|+..+-.+++..
T Consensus 608 ~A~~rll-~~~~~~~d~~vl~ 627 (777)
T KOG1128|consen 608 KAYHRLL-DLRKKYKDDEVLL 627 (777)
T ss_pred HHHHHHH-HhhhhcccchhhH
Confidence 9988884 5666655555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.1e-07 Score=80.70 Aligned_cols=183 Identities=10% Similarity=-0.041 Sum_probs=113.4
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCCC---Ch---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCH-HHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DT---LAWTAMISVFALNGYGKEAFDTFREMEAEGVR-PNH-VTFV 378 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~ 378 (569)
....+..++..+...|+++.|...|+++... +. .++..+..++...|++++|+..++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445566666777777777777777766532 11 34566667777777777777777777664221 111 1334
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038890 379 GLLSACAHS--------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLG 450 (569)
Q Consensus 379 ~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 450 (569)
.+..++... |+++.|...|+.+.+.+ +.+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 444444433 56667777777766433 122222222211100 00000 001124556
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+...|++++|...++.+.+..|.+ +.++..++.++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7889999999999999999987654 5789999999999999999999999886543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00032 Score=71.94 Aligned_cols=350 Identities=14% Similarity=0.175 Sum_probs=170.9
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCccc-----HHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLT-----FPFLLKECTKRLDGLVGASVYGQVVKFGVC 169 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 169 (569)
|+..-+..+.++...+-+. +-++++++.+-. |+..+ -+.|+-... .-+.....++.+++-..+.
T Consensus 983 dPe~vS~tVkAfMtadLp~------eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa- 1051 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPN------ELIELLEKIVLD---NSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDA- 1051 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcH------HHHHHHHHHhcC---CcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCc-
Confidence 4444455566666666666 666666666532 22221 122222222 2333444444444433221
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 038890 170 DDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGR 249 (569)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 249 (569)
| .+...+...+-+++|..+|++..- +....+.|+. .-++.+.|.+.-++..+| ..|+.+..+-.+.|.
T Consensus 1052 ~------~ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1052 P------DIAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGL 1119 (1666)
T ss_pred h------hHHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCc
Confidence 1 122333444455555555554321 1111111111 123444444444443332 234444444444555
Q ss_pred hHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC------------------------
Q 038890 250 AREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD------------------------ 305 (569)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 305 (569)
..+|.+-|-+. .|+..|..+++.+.+.|.+++-.+++..+++..-.
T Consensus 1120 v~dAieSyika----------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA----------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred hHHHHHHHHhc----------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence 54444444332 23344444455555555555444444444443322
Q ss_pred --CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 306 --CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 306 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
|+..-...+.+-|...|.++.|.-+|. ++.-|..+...+...|++..|.+.-++. .+..||..+-.+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 333333444444444444444444443 3445666777777777777777665542 256677777777
Q ss_pred HHccCCHHHHHHHHHHhHHhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLV--EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 459 (569)
|...+.+.-|. -.|+ -....-...++..|...|.+++.+.+++.. |.+. ....|..|.-.|++- +++
T Consensus 1259 Cvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~ 1329 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPE 1329 (1666)
T ss_pred HhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHH
Confidence 77766665443 2332 234455677888888889999988888876 5443 233455555555443 334
Q ss_pred HHHHHHHHHhh-cC-C------CChhHHHHHHHHHHHcCChHHHHH
Q 038890 460 LGEKVAQYLID-LD-P------LNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 460 ~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
+..+.++-... .+ | +....|..+.-.|.+-..|+.|.-
T Consensus 1330 km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1330 KMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 33333333222 11 1 123446666666666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-05 Score=75.71 Aligned_cols=213 Identities=9% Similarity=-0.041 Sum_probs=127.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh--hHHH
Q 038890 286 LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG-CVERAYGVFKEMPK---KDTLAWTAMISVFALNGYG--KEAF 359 (569)
Q Consensus 286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~ 359 (569)
.+..++|..+..++.+.. +-+..+++....++...| ++++++..++++.+ .+..+|+.....+.+.|.. ++++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 344455555555554443 233334443334444444 35566666655443 2334455444444444442 5566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc---CC----HHHHHHH
Q 038890 360 DTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA---GL----FSEAERL 432 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~ 432 (569)
..++++.+...+ +..+|.....++...|+++++++.++++.+.. +-+...|+....++.+. |. .++++++
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 777777664322 45666666666777777777777777777543 34556666655555443 22 2456666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC----------------
Q 038890 433 IRSM-PMEP-DVFVWGALLGGCQMH----GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG---------------- 490 (569)
Q Consensus 433 ~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 490 (569)
..++ ...| |...|+.+...+... ++..+|.+.+.++.+.+|.++.++..|++.|....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 6444 4455 556777777777663 44567888888888888999999999999998642
Q ss_pred --ChHHHHHHHHHH
Q 038890 491 --RFDDVKKTRNLM 502 (569)
Q Consensus 491 --~~~~A~~~~~~m 502 (569)
..++|.++++.+
T Consensus 286 ~~~~~~a~~~~~~l 299 (320)
T PLN02789 286 LSDSTLAQAVCSEL 299 (320)
T ss_pred cccHHHHHHHHHHH
Confidence 346788888887
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-06 Score=72.42 Aligned_cols=122 Identities=10% Similarity=-0.032 Sum_probs=79.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038890 360 DTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM 438 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 438 (569)
.+|++..+ +.|+. +..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34454444 23332 3345556667777777777777766433 445667777777777777777777777777 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 439 EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 439 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
.| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34 55667777777777777777777777777777777776666655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-05 Score=83.23 Aligned_cols=261 Identities=10% Similarity=-0.020 Sum_probs=129.8
Q ss_pred HHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHhCCChHHHHHHHHHchhccccCC-CCccHHHHHHHHHHH
Q 038890 213 YLRSGDLDVALDLFRRMKK----RNI----FSWNSIITGFVQGGRAREALELFQEMQSSSVEEM-VKPDKITIASVLSAC 283 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~~~~~~~ll~~~ 283 (569)
+...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....-..+ ..+...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3455666666655554321 111 1233444455556666666666655532110111 122334455555556
Q ss_pred HccCCHHHHHHHHHHHHHh----CCC--C-cchhHHHHHHHHHhcCChHHHHHHHhhCCC------C--ChhHHHHHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRS----GLD--C-DVVIGTALVDMYGKCGCVERAYGVFKEMPK------K--DTLAWTAMISV 348 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~ 348 (569)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 6666666666665554431 111 1 122233444555556666666666655422 1 12223334455
Q ss_pred HHHcCChhHHHHHHHHHHHC----CCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC--CHhHHHHHHHHH
Q 038890 349 FALNGYGKEAFDTFREMEAE----GVRPNHVTF--VGLLSACAHSGLVEKGRWCFVMMRHVYLVEP--HVYHYACMIDIL 420 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 420 (569)
+...|+.+.|...+.+.... +..+..... ...+..+...|+.+.|..++........-.+ ....+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 66667777777776665431 110000010 1112333446777777777665542110001 011134566667
Q ss_pred HHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 421 SRAGLFSEAERLIRSM-------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
...|++++|...+++. +..++ ..+...+..++...|+.++|...+.++.+...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 7777777777777665 22221 23455556667777888888888887777553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-06 Score=71.36 Aligned_cols=107 Identities=12% Similarity=-0.057 Sum_probs=92.1
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
.+++...+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555553 1344 3556788899999999999999998 5555 67799999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
|.++.++..++.++.+.|++++|...++......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999997754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-06 Score=81.67 Aligned_cols=250 Identities=13% Similarity=0.027 Sum_probs=179.5
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
..-+.+.|++.+|.-.|+..++. -+-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|..
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq-----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ-----DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh-----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence 34567788888888888887632 24567778888888888888888888888888765 5567777778888888
Q ss_pred cCChHHHHHHHhhCCCCC-hhHHHHHH---------HHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCC
Q 038890 321 CGCVERAYGVFKEMPKKD-TLAWTAMI---------SVFALNGYGKEAFDTFREME-AEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
.|.-..|...++.-.... ...|.... ..+..........++|-++. ..+..+|......|.-.|--.|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888888877653211 00000000 11111122334445555544 45545677777777777888999
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
+++|...|+.+.... +-|..+||.|.-.+....+.++|++.|+++ .++|+- .....|.-.|...|.+.+|...|-.
T Consensus 446 fdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999998543 557789999999999999999999999999 888875 4777888899999999999999998
Q ss_pred HhhcCCC----------ChhHHHHHHHHHHHcCChHHHHHH
Q 038890 468 LIDLDPL----------NHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 468 ~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
++.+.+. +..+|..|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8875432 124677777777777776655443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00011 Score=63.80 Aligned_cols=223 Identities=12% Similarity=0.018 Sum_probs=135.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHH-HHHHHHHHhCCCCcchhHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGK-WVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
-+-++|...|.+.....-.. .+-.|....+..+.......++.+.-. .+.+.+.......+......-...
T Consensus 46 y~~raylAlg~~~~~~~eI~--------~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i 117 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIK--------EGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAII 117 (299)
T ss_pred HHHHHHHHcccccccccccc--------cccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHH
Confidence 34456666665544332222 122344444444444444444433332 334444444333333333444556
Q ss_pred HHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH----SGLVEKG 393 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a 393 (569)
|+..|++++|++...... +....-.=+..+.+..+.+-|...+++|.+- -+..|.+.|..++.+ .+.+..|
T Consensus 118 ~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred hhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 778888888888887733 3333333345566777888888888888763 255677766666543 4567888
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhh
Q 038890 394 RWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNV-ELGEKVAQYLID 470 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 470 (569)
.-+|+++.+++ +|++.+.+....++...|++++|..++++. ....++.++..++-.-...|.. +-..+.+.+++.
T Consensus 193 fyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88888887555 688888888888888888888888888887 4344666666666655555544 555677777777
Q ss_pred cCCCCh
Q 038890 471 LDPLNH 476 (569)
Q Consensus 471 ~~p~~~ 476 (569)
..|..+
T Consensus 271 ~~p~h~ 276 (299)
T KOG3081|consen 271 SHPEHP 276 (299)
T ss_pred cCCcch
Confidence 777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=69.33 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 343 TAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...|.+..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHHHH
Confidence 44555666677777777666664432 12234455557777778888888888888877433 6777888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
.|+++.|..-|.+. .+.| +....+.+.-.+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888877777 4444 455677777777888888888888888888777778888888888888888888877654
Q ss_pred H
Q 038890 501 L 501 (569)
Q Consensus 501 ~ 501 (569)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-05 Score=79.88 Aligned_cols=130 Identities=10% Similarity=0.004 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLG 450 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 450 (569)
+...+..|.......|.+++|..+++.+.+.. +-+......++..+.+.+++++|+..+++. ...|+ ......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 45555555555556666666666666555322 223344455555566666666666666555 33442 334445555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666665555566666666666666666666666665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-06 Score=82.66 Aligned_cols=220 Identities=10% Similarity=0.024 Sum_probs=173.7
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHH
Q 038890 269 VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMI 346 (569)
Q Consensus 269 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 346 (569)
.+|--..-..+...+...|-...|..+++++. .+...+.+|+..|+..+|..+..+-.+ +++..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 44444445556677778888888888888764 456688899999999999998776554 5677777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (569)
.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 7766666678888887764322 22222233345789999999998877554 44567888899999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..|.+.|... ...|| ...|+.+-.+|.+.++-.+|...++++.+.+..+..+|.+......+.|.+++|.+.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999988 66775 469999999999999999999999999999988899999999999999999999999999865
Q ss_pred CC
Q 038890 505 RG 506 (569)
Q Consensus 505 ~g 506 (569)
..
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 43
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-05 Score=78.97 Aligned_cols=175 Identities=12% Similarity=0.019 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038890 153 GLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 153 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (569)
...|...|-+.++..+. =...|..|...|...-+...|.+.|++.-+ .+...+......|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 44555555444444322 234566677777777777777777777665 34556777777777777777777774433
Q ss_pred CCCCh-----hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 038890 230 KKRNI-----FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 230 ~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 304 (569)
.+.+. ..|....-.|.+.++..+|..-|+...+. -+-|...|..+..+|...|.+..|.++|.++...+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC-----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 32211 12222333455666666666666665421 23455566666666666666666666666555432
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
|.+....-...-..+..|++.+|...+..+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 112222122222344555666665555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-05 Score=68.69 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 038890 371 RPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGAL 448 (569)
Q Consensus 371 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 448 (569)
.|+......+-..+...|+-+....+.......+ +.+......++....+.|++..|+..+++. .-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 4543333556677788888888888888766443 456667777999999999999999999999 556688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.-+|.+.|+++.|...|.++.++.|.++..+++++..|.-.|+++.|..++......+-
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=68.99 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=113.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 315 VDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
+..|...|+++.+....+.+..+. ..+...++.++++..++...+.. +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345667777766654443322221 01112566677888888777653 346778888889999999999999
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDIL-SRAGL--FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
..|+...+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++.
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988544 45778888888864 67777 59999999998 5555 66788888889999999999999999999
Q ss_pred hcCCCChhHH
Q 038890 470 DLDPLNHAFY 479 (569)
Q Consensus 470 ~~~p~~~~~~ 479 (569)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9988765433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-07 Score=53.84 Aligned_cols=32 Identities=41% Similarity=0.508 Sum_probs=21.7
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038890 167 GVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 198 (569)
|+.||..+||+|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-05 Score=81.36 Aligned_cols=219 Identities=13% Similarity=0.069 Sum_probs=160.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-hhHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN--------RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK-RN-IFSWNSI 240 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 240 (569)
+...|-..|......++++.|++++++... .-...|.++++.-...|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456777778888888888888888888765 1234688888887778888888888888875 23 3467888
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHH
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-CDVVIGTALVDMYG 319 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 319 (569)
...|.+.+.+++|.++|+.|.+ .+.-....|...+..+.+.++-+.|..++.++.+.-.. -........+..-.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~K-----KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLK-----KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHH-----HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999864 23356677888888888888888888888888775311 13444555666677
Q ss_pred hcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHH
Q 038890 320 KCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH--VTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~ 394 (569)
+.|+.+.+..+|+..... -...|+..+..-.+.|+.+.+..+|++....++.|-. ..|...+..--+.|+-+.++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888877642 4567888888888888888888999988888777654 35555555444555544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-05 Score=71.92 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=127.9
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcc---hhHHHHHHHHHhcCChHHHHHHHhhCCCC---Chh---
Q 038890 270 KPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDV---VIGTALVDMYGKCGCVERAYGVFKEMPKK---DTL--- 340 (569)
Q Consensus 270 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--- 340 (569)
......+......+...|+++.|...++++.... +.+. ..+..+..+|...|++++|...|+.+.+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999998764 2222 46677889999999999999999998642 222
Q ss_pred HHHHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHh
Q 038890 341 AWTAMISVFALN--------GYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVY 411 (569)
Q Consensus 341 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (569)
++..+..++... |+.+.|...|+.+... .|+.. ....+..... . ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------H
Confidence 455556666654 7789999999998875 44432 2222211100 0 00000 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PM---EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
....+...+.+.|++++|+..+++. .. .| ....+..+..++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1225667788999999999998887 22 23 346888899999999999999998888876655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-07 Score=53.15 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=21.8
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666667777777777777777777666665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.5e-05 Score=69.99 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=85.4
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|+++.|+..++.+.... +.|+..+....+.+.+.|+..+|.+.++++ ...|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 445677888888888877544 456666677777888888888888888877 55665 45666777778888888888
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
+.+++.....+|+++..|..|+++|...|+..+|..-.-+.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88888888888888888888888777777666665544443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-06 Score=67.43 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=76.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455566777777888888888888777 3334 5667777788888888888888888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 88888888888888877644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00039 Score=65.24 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=130.9
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACAYLG-AIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
-..+...++.++|+.++.+++. +.|+ ...|+..-.++...| +++++...++.+.+.+ +.+..+++.....+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIR------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3344455666677777766652 1232 233444444444445 4566777776666654 34444555444444
Q ss_pred HhcCCh--HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCH
Q 038890 319 GKCGCV--ERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS---GLV 390 (569)
Q Consensus 319 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~ 390 (569)
.+.|+. +++..+++.+.+ .+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 445542 556666655543 35667777777777777888888888888776433 444454444444333 222
Q ss_pred ----HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----
Q 038890 391 ----EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA----GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG---- 456 (569)
Q Consensus 391 ----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---- 456 (569)
+.......++.... +-+...|+.+...+... +...+|.+.+.+. ...| +...+..|+..+....
T Consensus 196 ~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 34555555555333 45667777777777663 3345577776665 3333 5566777777776432
Q ss_pred --------------CHHHHHHHHHHHhhcCCCChhHHHH
Q 038890 457 --------------NVELGEKVAQYLIDLDPLNHAFYVN 481 (569)
Q Consensus 457 --------------~~~~a~~~~~~~~~~~p~~~~~~~~ 481 (569)
..+.|.++++.+.+.+|-....|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3366777777775566654444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-06 Score=66.46 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
...-.+...+...|++++|..+|+-. ...| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445666678899999999999988 5556 567888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCC
Q 038890 489 AGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g 506 (569)
.|+.+.|.+.|+......
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999886543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00015 Score=75.22 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
+...+..|.....+.|.+++|..+++...+ +.|+. .....+...+.+.+.+++|....+...... +-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 355666666677777777777777777766 34543 355556666777777777777777766432 3445566666
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 417 IDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..++...|++++|..+|++. ...| +..++..+..++...|+.++|...|+++.+...+-...|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 77777777777777777776 2233 3556777777777777777777777777765543334433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0047 Score=63.17 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCC
Q 038890 445 WGALLGGCQMHGNV---ELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEV 511 (569)
Q Consensus 445 ~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 511 (569)
-+.|+..+.+.++. -+|+-+++......|.|..+-..+++.|.-.|-+..|.++++.+--+.|.-|+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 35666777776665 46777777878888888888888888888888888888888888766666653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00025 Score=67.25 Aligned_cols=146 Identities=16% Similarity=0.070 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-VYHYACM 416 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 416 (569)
...+.-....+...|..++|+..+..+... .|+.. ........+...++.++|.+.++.+... .|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHH
Confidence 334444444556779999999999998875 45554 4455567788999999999999999854 355 6677788
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 417 IDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
..+|.+.|++.+|+.++++. ..+-|+..|..|..+|...|+..++... .+..|.-.|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 99999999999999999988 4445788999999999999998877653 4456778899999
Q ss_pred HHHHHHHHHHCC
Q 038890 495 VKKTRNLMKERG 506 (569)
Q Consensus 495 A~~~~~~m~~~g 506 (569)
|...+....+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998887664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0003 Score=60.76 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=97.8
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
+-..|++++|+++++.+.+.. +-|..++.-=+...-..|+.-.|++-+....+.+ ..|...|.-+...|...|++++
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHH
Confidence 345688888888888888764 2344555544445556677778888888777665 7889999999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 429 AERLIRSM-PMEP-DVFVWGALLGGCQMHG---NVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 429 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
|.-.++++ -..| ++..+..+...+...| +.+.+.++|.+++++.|.+...+..+
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 99999999 3344 6666777777655444 67789999999999999766555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-05 Score=75.01 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=99.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 453 (569)
....|+..+...+.++.|..+|+++.+.. |+ ....++..+...++-.+|++++.+. ...| +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34456666777888999999999888532 54 3445778888888888998888887 3334 6667777777788
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
..++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888773
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00017 Score=75.62 Aligned_cols=227 Identities=12% Similarity=0.086 Sum_probs=140.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH
Q 038890 233 NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI-TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311 (569)
Q Consensus 233 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (569)
+...+..|+..+...+++++|.++.+.... ..|+.. .|-.+...+...++...+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~------~~P~~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK------EHKKSISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCCcceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 456788899999999999999999997653 234432 333333355555555544433
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
.++.......++.-+..++..+.+ .+...+..+..+|-+.|+.++|..+|+++++.. +-|....+.+...++.. +
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 223333333334333333333332 133466778888888888888888888888865 33567778888888777 8
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHH---HH--HcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDI---LS--RAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~ 460 (569)
.++|.+++.+....+ .+..-|+.+... ++ ...+.+.-..+.+.+ +..--..++.-+...|...+++++
T Consensus 165 L~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 165 KEKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 888888887776432 111111111111 11 111222222222222 222234455556677888899999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 461 GEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 461 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
+..+++.+.+.+|.|..+...++.+|.
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999999998887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00048 Score=60.01 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=67.1
Q ss_pred HHHHhcCChHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 038890 316 DMYGKCGCVERAYGVFKEMPKK-DTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLV 390 (569)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 390 (569)
..+.+..+.+-|...++.|.+- +..+.+.|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3344555666666666666553 33445545555443 24567777777777654 567777777777777777788
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
++|..+++....+. ..++.+...++.+-...|...+
T Consensus 224 eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 224 EEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChH
Confidence 88877777777544 3455555555555555554433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00055 Score=71.87 Aligned_cols=169 Identities=5% Similarity=-0.016 Sum_probs=105.2
Q ss_pred CCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 133 ISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMII 211 (569)
Q Consensus 133 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 211 (569)
..| +...+..|+..+...+++++|.++.+..++..+. ....|-.+...+...++.+++..+ . ++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~-----------~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--N-----------LID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--h-----------hhh
Confidence 444 3446777888888889999999998877776433 333333344467777776666555 2 222
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCH
Q 038890 212 GYLRSGDLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAI 289 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 289 (569)
......++.-+..+...+.. .+...+..+..+|.+.|+.++|..+++++++ .. +-|....+.+...|+.. ++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK----AD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh----cC-cccHHHHHHHHHHHHHh-hH
Confidence 22233333333333333332 2334666777888888888888888888873 22 45677777777777777 88
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK 336 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 336 (569)
++|..++.++... |...+++..+.+++.++..
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 8888777776554 4444566666666665554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0049 Score=59.40 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHh
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVF 173 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 173 (569)
|+.+|+.||+-+-.+ .++ ++.+.|+++.. +-| .+..|..-|..-....+++..+.+|.+.+..-+ +..
T Consensus 19 di~sw~~lire~qt~-~~~------~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlD 87 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PID------KVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLD 87 (656)
T ss_pred cHHHHHHHHHHHccC-CHH------HHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHh
Confidence 677888888764433 555 78888888876 345 345566667777777888888888887776543 344
Q ss_pred HHHHHHH
Q 038890 174 VQNSVIS 180 (569)
Q Consensus 174 ~~~~l~~ 180 (569)
.|...+.
T Consensus 88 LW~lYl~ 94 (656)
T KOG1914|consen 88 LWKLYLS 94 (656)
T ss_pred HHHHHHH
Confidence 5554444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-05 Score=61.14 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=90.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038890 361 TFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM 438 (569)
Q Consensus 361 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 438 (569)
.|++.... .|+ ......+...+...|++++|...|+.+.... +.+...+..+..++...|++++|..+++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555543 343 3455666777888999999999999988543 557788889999999999999999999888 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 439 EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 439 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
.| +...+..+...+...|++++|...++++.+..|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 56778888889999999999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0071 Score=58.35 Aligned_cols=444 Identities=13% Similarity=0.060 Sum_probs=240.7
Q ss_pred CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCcccH
Q 038890 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--SDLYTY 99 (569)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 99 (569)
|.+..++..++.-+... .+++++..++++... .+..+ ..+..-+..-.+. .+++..+++|.+... -++..|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~---r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLnlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSP---RAWKLYIERELAS--KDFESVEKLFSRCLVKVLNLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCc---HHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhHhHH
Confidence 44555555555555333 799999999999875 33444 7888888888888 999999999998663 478888
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHH-CCCCCCc-ccHHHHHHHH---------HccCCcHHHHHHHHHHHHhCC
Q 038890 100 NIMIRANACKSSETNDTHSGKCLKLYKQMLC-TGISPDC-LTFPFLLKEC---------TKRLDGLVGASVYGQVVKFGV 168 (569)
Q Consensus 100 ~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~g~ 168 (569)
...|. |++.-+....+.-+...+.|+-..+ -|+.+-. ..|...+..+ ....+.+..+++|.+++...+
T Consensus 90 ~lYl~-YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLS-YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHH-HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 88876 4443332222211233444554443 3544432 2344444432 222344556666766655322
Q ss_pred CCcHhHHHHH------HHH-----H--HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh-------cCCHHHHHHHHHh
Q 038890 169 CDDVFVQNSV------ISL-----F--MACGFVTSARMLFDEMSNRDVVSWNAMIIGYLR-------SGDLDVALDLFRR 228 (569)
Q Consensus 169 ~~~~~~~~~l------~~~-----~--~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~ 228 (569)
.-=...|+-. ++. + -+...+-.|.++++++. .+.+++-+ .|--++..++
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~qv--- 237 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQQV--- 237 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHHHH---
Confidence 2111122211 000 0 01123344444444432 12222211 1111111110
Q ss_pred cCCCChhHHHHHHHHHHhCC------C--hHHHHHHHHHchhccccCCCCccHHHHHH-H----HHHHHccCC-------
Q 038890 229 MKKRNIFSWNSIITGFVQGG------R--AREALELFQEMQSSSVEEMVKPDKITIAS-V----LSACAYLGA------- 288 (569)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~g------~--~~~a~~~~~~m~~~~~~~~~~p~~~~~~~-l----l~~~~~~~~------- 288 (569)
..|-.+|..-...+ . .....-.+++... --+..|+.....+ . -+.+...|+
T Consensus 238 ------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll---~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 238 ------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLL---YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSL 308 (656)
T ss_pred ------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhh
Confidence 01111111100000 0 0001111111100 1111222111000 0 011222232
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC---ChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG---CVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
-+++..+++.....-..-+..+|..+...--..- +.+...+.++++.. .-..+|-..+....+......|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566665554333334444444433221111 24555555555443 2345688888888888999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---C
Q 038890 362 FREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM---P 437 (569)
Q Consensus 362 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 437 (569)
|.+..+.+..+ +...+++++..+| .++.+.|.++|+.-.+.+| .++..-...++.+...|+-..|..+|++. .
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988877 5667788887666 5789999999999887763 44555577888899999999999999998 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHHcCChHHHH
Q 038890 438 MEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN----HAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 438 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+.|+ ...|..++.--+.-|+...+.++-++.....|.+ ...-..+++-|.-.+.+..-.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 4444 4699999999999999999999998887655521 122334445555555544333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00034 Score=60.47 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=128.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
|..++-+....|+.+.|...++.+... + |... .-..-..-+...|.+++|+++++.+.+.. +.|..+|..-+-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 334555666778899999999998775 3 4433 32222233556899999999999999655 66778888777777
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC---ChHHH
Q 038890 421 SRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG---RFDDV 495 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 495 (569)
...|+.-+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++=.+|.++..+..+++.+.-.| +++-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888877776 566799999999999999999999999999999999999999999999876655 57778
Q ss_pred HHHHHHHHHCCC
Q 038890 496 KKTRNLMKERGI 507 (569)
Q Consensus 496 ~~~~~~m~~~g~ 507 (569)
.+++.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 888888876543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=69.95 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++.+..... +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345566677777888999999998888877777778888888888889999998888642 2355566666677888999
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP 440 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 440 (569)
++.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+..++.++..|
T Consensus 250 ~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999988543 3455789999999999999999999998885433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00018 Score=59.36 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=75.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLG 450 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~ 450 (569)
|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 34444443 36677777777777775442110 1233344556677777777777777777 222332 23444566
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.+...|++++|+..++.. ...+..+..+...+++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888777552 223335566777888888888888888877653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.7e-06 Score=59.73 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEP---DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45667777777766 2222 344555567777777777777777777 555666666666667778888888888877
Q ss_pred HHH
Q 038890 499 RNL 501 (569)
Q Consensus 499 ~~~ 501 (569)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.03 E-value=9e-05 Score=55.93 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+..+...+...|++++|..++++. ...| +...+..+...+...++++.|.+.++...+..|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677778888888888888877 4444 34667777888888899999999999999988888888888999999999
Q ss_pred ChHHHHHHHHHHHHC
Q 038890 491 RFDDVKKTRNLMKER 505 (569)
Q Consensus 491 ~~~~A~~~~~~m~~~ 505 (569)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.028 Score=57.83 Aligned_cols=159 Identities=11% Similarity=-0.004 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 342 WTAMISVFALNGYGK---EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 342 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
-+.|+..+-+.++.. +|+-+++..... -+-|..+-..+++.|+-.|-+..|...|+.+- ...+..|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd-IK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLD-IKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcc-hHHhhhccchHH-HHH
Confidence 445566666666554 344444443332 12234455566677777777777777777665 333444443332 223
Q ss_pred HHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCCh
Q 038890 419 ILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL----NHAFYVNLCDMYAKAGRF 492 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 492 (569)
-+...|++..+...++.. .+ .-+..----++....+.|.+....++..-=.++... -..+-+..+..++..++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 344566776666666554 11 011111112233334666776665554433333222 234455677777888888
Q ss_pred HHHHHHHHHHH
Q 038890 493 DDVKKTRNLMK 503 (569)
Q Consensus 493 ~~A~~~~~~m~ 503 (569)
++-...+..|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 88888888876
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00019 Score=57.01 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=45.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGC 452 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 452 (569)
.+...+...|++++|...|+.+...+.-.+ ....+..+..++.+.|+++.|...|+.+ ...|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543221000 1223344455555555555555555544 11222 23344444455
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
...|+.++|...++++.+..|+++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.4e-05 Score=65.96 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=90.9
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 461 (569)
..+.+++++|...|....+-. +.|++.|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 456788888888888888432 456777888888888888888888877777 666654 5888888888888899998
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCC
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFD---DVKKTRNLMKERGIRKE 510 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~~~ 510 (569)
++.|+++++++|++......|-.+=.+.+... .+..-++.....|..|+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 88889988888888877777776666555544 33333443344444343
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=57.70 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNL 482 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 482 (569)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999988 33343 3467778899999999999999999999988774 5678899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC
Q 038890 483 CDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.9e-05 Score=54.02 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG-RFDDVKKTRNLMKER 505 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 505 (569)
+..+|..+...+...|++++|+..|+++++.+|.++.++..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999987653
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=5e-05 Score=52.69 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+...+...|++++|+..|+++++..|.++.++..++.++.+.|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678889999999999999999999999999999999999999999999999987643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.1e-05 Score=46.56 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888999999999999999999988888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.3e-05 Score=47.47 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=32.9
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC 137 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 137 (569)
.+||++|.+|++.|+++ +|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~------~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVE------EALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHH------HHHHHHHHHHHcCCCCCC
Confidence 47999999999999999 999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0012 Score=59.30 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=87.4
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCChhHHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG---NVELGEKVAQYLIDLDPLNHAFYVN 481 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~ 481 (569)
+-|...|-.|...|...|+.+.|..-|... .+.| +...+..+..++..+. .-.++..+++++...+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 568899999999999999999999999988 4444 5667777777754432 4578999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 482 LCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 482 l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
|+..+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0013 Score=54.37 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--HhHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPN---HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH--VYHYACM 416 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 416 (569)
|..++..+ ..++...+...++.+.+.... + ......+...+...|++++|...|+.+.... ..|. ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 33444444 367777777777777764221 2 1233344566777788888888888877432 1222 1244456
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 417 IDILSRAGLFSEAERLIRSMP-MEPDVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
...+...|++++|+..++... .......+......+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777778888888888887762 2224455666677788888888888887765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.6e-05 Score=46.68 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=31.9
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP 135 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p 135 (569)
+.+||.+|.+|++.|+++ .|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~------~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPD------AALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHH------HHHHHHHHHHHhCCCC
Confidence 368999999999999999 9999999999999987
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.026 Score=52.94 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 315 VDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+-.. +-++..|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33344445555555555555445555555555555555555444332211 112244444455555555555444
Q ss_pred HHHHH
Q 038890 395 WCFVM 399 (569)
Q Consensus 395 ~~~~~ 399 (569)
.+...
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 44433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00021 Score=68.73 Aligned_cols=107 Identities=11% Similarity=-0.007 Sum_probs=89.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
-...+...|+++.|+..|+++.+.. +.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3455677899999999999998644 456788889999999999999999999988 5556 56788888999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+++|+..|+++++++|.++.+...+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998877766554433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.4e-05 Score=45.28 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888888777776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0013 Score=60.95 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA-CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467888888888888999999999998543 2233444444433 333577888999999999776 577888999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999998 333333 4899999999999999999999999999887754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00046 Score=66.36 Aligned_cols=103 Identities=9% Similarity=-0.060 Sum_probs=83.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
....+...|++++|+..|++.++... -+...|..+..++...|+++.|+..++.+.... +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998532 256778888889999999999999999998644 456788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038890 425 LFSEAERLIRSM-PMEPDVFVWGALLG 450 (569)
Q Consensus 425 ~~~~A~~~~~~~-~~~p~~~~~~~l~~ 450 (569)
++++|+..|++. ...|+.......+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999998 66676554444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00039 Score=59.38 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=69.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777788888888887776 22222 3567777888888888888888888888888888888888888
Q ss_pred HHHHcCC--------------hHHHHHHHHHHHH
Q 038890 485 MYAKAGR--------------FDDVKKTRNLMKE 504 (569)
Q Consensus 485 ~~~~~g~--------------~~~A~~~~~~m~~ 504 (569)
+|...|+ +++|.+++++...
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 8887776 4556666665544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00038 Score=59.26 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=76.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
....|..++..+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888889999999998888 33332 347888889999999999999999999999999888888888
Q ss_pred HHHH-------HcCChHHHHHHHHHH
Q 038890 484 DMYA-------KAGRFDDVKKTRNLM 502 (569)
Q Consensus 484 ~~~~-------~~g~~~~A~~~~~~m 502 (569)
.++. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888777766654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.034 Score=52.62 Aligned_cols=133 Identities=15% Similarity=0.153 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH-HHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHY-ACM 416 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l 416 (569)
..+|...+....+....+.|..+|.+..+.| +.++...+++++..++ .|+...|..+|+.-...+ ||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3456677777788888999999999999988 6677788888887665 588899999999877554 444444 566
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 417 IDILSRAGLFSEAERLIRSM--PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
+..+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77788999999999999976 33333 5689999998899999999998888888877763
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=64.52 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
.-+.+.+++.+|+..|.+. .+.| |.+.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456889999999999998 7777 6677777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 038890 496 KKTRNLMKE 504 (569)
Q Consensus 496 ~~~~~~m~~ 504 (569)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999988765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00055 Score=51.48 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=49.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
+...+...|++++|...++...+.. +.+...+..+..++...|++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3444445555555555555554322 223344555555555566666666666554 2222 33455555666666666
Q ss_pred HHHHHHHHHHHhhcCC
Q 038890 458 VELGEKVAQYLIDLDP 473 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p 473 (569)
++.|...+....+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666655544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0017 Score=65.33 Aligned_cols=141 Identities=12% Similarity=0.012 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHc--c---CCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHHc--------CCHHHHHHHHHh
Q 038890 370 VRPNHVTFVGLLSACAH--S---GLVEKGRWCFVMMRHVYLVEPH-VYHYACMIDILSRA--------GLFSEAERLIRS 435 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 435 (569)
.+.+...|..++++... . ++.+.|..+|++..+. .|+ ...|..+..++... .+...+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34455555555555322 1 2255666666666643 233 33343333332221 122334444444
Q ss_pred C----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCC
Q 038890 436 M----PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEV 511 (569)
Q Consensus 436 ~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 511 (569)
. ....+...+..+.-.....|++++|...++++.+++| +...|..++.++...|+.++|.+.+++..... |..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 2 1233556777776666778899999999999999888 46788889999999999999999888876644 333
Q ss_pred CceeE
Q 038890 512 PGCSS 516 (569)
Q Consensus 512 ~~~~~ 516 (569)
|++.|
T Consensus 487 pt~~~ 491 (517)
T PRK10153 487 NTLYW 491 (517)
T ss_pred chHHH
Confidence 55554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.6e-05 Score=52.04 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=45.3
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|++.|+++.+..|.+..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888999999999999999998888899999999999999999888776543
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0022 Score=59.61 Aligned_cols=154 Identities=8% Similarity=-0.029 Sum_probs=107.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHhHHhcCCCCCHhH------------
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS--ACAHSGLVEKGRWCFVMMRHVYLVEPHVYH------------ 412 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 412 (569)
.++...|++++|.+.--..++.. + ...+..+++ ++-..++.+.+...|++..+ . .|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-l--dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALR-L--DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhc-c--ChhhhhHHhHhhhHHHHH
Confidence 34556788888887766665532 1 122223333 34456778888888877763 2 343211
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 413 -YACMIDILSRAGLFSEAERLIRSM-PM-----EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 413 -~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
+..-..-..+.|++..|.+.|.+. ++ +|+...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 222233456788999999999888 43 44556677777778889999999999999999998888888888889
Q ss_pred HHHcCChHHHHHHHHHHHHCC
Q 038890 486 YAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.-.++|++|.+.+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999888875543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0047 Score=57.53 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC----CCCCHh-H
Q 038890 345 MISVFALN-GYGKEAFDTFREMEA----EGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYL----VEPHVY-H 412 (569)
Q Consensus 345 li~~~~~~-g~~~~A~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~ 412 (569)
+...|... |+++.|++.|++..+ .| .+. ..++..+...+.+.|++++|..+|+++....- ...++. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33444444 556666655555432 11 111 12444555556666666666666666553211 011111 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
+...+-++...|++..|...+++.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223333455566666666666665
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=48.25 Aligned_cols=131 Identities=14% Similarity=0.085 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC------CCCCCHH
Q 038890 370 VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM------PMEPDVF 443 (569)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~ 443 (569)
..|+...-..|..+....|+..+|...|++.. ..-+.-|......+.++....+++..|...+++. +..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 46777777778889999999999999999887 4555678888889999999999999999999887 233443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
-..+...+...|.+.+|+..|+.+.+..|. +.........+.++|+.++|..-+..+.+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445778899999999999999999998876 45666677889999999988876666544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00022 Score=52.46 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=34.8
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVR-PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (569)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++... .. +.+......+..++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-LD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-HH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555543221 122233334555555555555555555411 11 1122233333555555555555555
Q ss_pred HHH
Q 038890 432 LIR 434 (569)
Q Consensus 432 ~~~ 434 (569)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00024 Score=49.24 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
+...+...|++++|+..|++. ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 556888888889999999999999999999888874
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0023 Score=54.57 Aligned_cols=129 Identities=14% Similarity=0.094 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
...+..+...+...|++++|+..|++.......+. ...+..+..++...|++++|...+++..... +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 44566666667777777777777777765432222 2456666666777777777777777766432 2344555566
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
..++...|+...+..-++.. ...+++|.++++++.+.+|++ +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 66666666655544322221 112577888888888888876 434444444444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0006 Score=63.03 Aligned_cols=131 Identities=8% Similarity=-0.064 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhH---HhcCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMR---HVYLVE-PHVYHYACMIDILSRAGLFSEAERLIRSM-------P-MEPDV 442 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 442 (569)
..|..|...|.-.|+++.|+...+.-. +.+|=+ .....+..+..+++-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666666667789999987665322 233311 22457788999999999999999988865 2 12244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDL----D--PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
....+|...|.-..+++.|+.++.+-..+ + .....++-+|+.+|...|..++|+.+.+...+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56778888888888999999988875542 2 224577888999999999999999887776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=50.04 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
...+.+.++++.|.+++++++..+|.++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999886553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0061 Score=61.43 Aligned_cols=139 Identities=13% Similarity=0.015 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHHHH--c---CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHhHH
Q 038890 337 KDTLAWTAMISVFAL--N---GYGKEAFDTFREMEAEGVRPNH-VTFVGLLSACAHS--------GLVEKGRWCFVMMRH 402 (569)
Q Consensus 337 ~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 402 (569)
.+...|...+.+... . ++...|+.+|++..+. .|+. ..+..+..++... .+...+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466777777776443 2 2367889999998884 5653 3444433333211 123344444444332
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
....+.++..|..+.......|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2122445677888877777889999999999999 77789889999999999999999999999999999999774
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0046 Score=57.59 Aligned_cols=162 Identities=12% Similarity=0.179 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHH
Q 038890 173 FVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRS-GDLDVALDLFRRMKK-----RN----IFSWNSIIT 242 (569)
Q Consensus 173 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~l~~ 242 (569)
..+...+..|...|++..|-+++. .+...|... |+++.|++.|++..+ .+ ..++..+..
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344455566667777777666544 355666666 778888777777652 11 235667778
Q ss_pred HHHhCCChHHHHHHHHHchhccccCC-CCccHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCCc--chhHHHHHH
Q 038890 243 GFVQGGRAREALELFQEMQSSSVEEM-VKPDKI-TIASVLSACAYLGAIDHGKWVHGYLRRSG--LDCD--VVIGTALVD 316 (569)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~ 316 (569)
.+.+.|++++|.++|+++.......+ .+.+.. .+...+-++...|+...|...+++..... +..+ ..+...|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 89999999999999998763211111 123332 23334446667788888888888876542 2222 345566677
Q ss_pred HHHhc--CChHHHHHHHhhCCCCChhHHHHH
Q 038890 317 MYGKC--GCVERAYGVFKEMPKKDTLAWTAM 345 (569)
Q Consensus 317 ~~~~~--g~~~~A~~~~~~~~~~~~~~~~~l 345 (569)
++-.. ..++.+..-|+.+.+-|..--..|
T Consensus 244 A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 66543 357777788887777665444333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.099 Score=49.75 Aligned_cols=426 Identities=13% Similarity=0.110 Sum_probs=206.9
Q ss_pred HHHhhcChHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC-CcccHHHHHHH--Hh
Q 038890 34 AIDECKNMRELKEIHTQIIKSPCLQTN---DHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS-DLYTYNIMIRA--NA 107 (569)
Q Consensus 34 ~l~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~ 107 (569)
.|.+.++..++..+|..+.+..- .++ +..-....++++|.. ++.+.-........+. .-..|-.+..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl---~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL---NNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45677899999999999997632 222 112344578888887 4566655555555432 13445455444 34
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHC--CCCCC---c---------ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCC----
Q 038890 108 CKSSETNDTHSGKCLKLYKQMLCT--GISPD---C---------LTFPFLLKECTKRLDGLVGASVYGQVVKFGVC---- 169 (569)
Q Consensus 108 ~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---- 169 (569)
+.+.+. +|++.+....++ +-.|. . .-=+..+..+...|.+.+++.+++++...=++
T Consensus 91 ~~k~~~------kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~ 164 (549)
T PF07079_consen 91 KQKEYR------KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECE 164 (549)
T ss_pred HhhhHH------HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhc
Confidence 567777 899888887665 32221 1 11123445667889999999999888775433
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHH---------HHHHHHhcC----------
Q 038890 170 DDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDV---------ALDLFRRMK---------- 230 (569)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---------A~~~~~~~~---------- 230 (569)
.+..+||.++-.+++.=-++- -+.+...=..-|--++-.|.+.=..-+ +.+++..+.
T Consensus 165 w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 165 WNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred ccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 788889887777665421111 011111001112223333322110000 111111100
Q ss_pred ----------------CCCh-hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHH
Q 038890 231 ----------------KRNI-FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGK 293 (569)
Q Consensus 231 ----------------~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 293 (569)
.|+. .+...+...+.+ +.+++..+.+.+....+..-.+-=..+|..++....+.++...|.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1111 011112222222 223333332222200000000001233444444444445544444
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 294 WVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+.+.-+.-. .|+...-..+ --..+.+..|...|...++ +...=+.+|+......+ |
T Consensus 319 q~l~lL~~l--dp~~svs~Kl----------lls~~~lq~Iv~~DD~~~T----------klr~yL~lwe~~qs~Di--D 374 (549)
T PF07079_consen 319 QYLALLKIL--DPRISVSEKL----------LLSPKVLQDIVCEDDESYT----------KLRDYLNLWEEIQSYDI--D 374 (549)
T ss_pred HHHHHHHhc--CCcchhhhhh----------hcCHHHHHHHHhcchHHHH----------HHHHHHHHHHHHHhhcc--c
Confidence 444443332 1222111111 0111112222211111111 11222344444443322 2
Q ss_pred H-HHHHHHHHH---HHccCC-HHHHHHHHHHhHHhcCCCCCHhHHHHHHH----HHHHc---CCHH---HHHHHHHhCCC
Q 038890 374 H-VTFVGLLSA---CAHSGL-VEKGRWCFVMMRHVYLVEPHVYHYACMID----ILSRA---GLFS---EAERLIRSMPM 438 (569)
Q Consensus 374 ~-~~~~~ll~~---~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~ 438 (569)
. .....|+.+ +-+.|. -++|+.+++.+.+-. +-|...-|.+.. .|..+ ..+. +-...+++.|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 2 222223322 334444 677777777777322 233333222221 12111 1111 22233444466
Q ss_pred CC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 439 EP----DVFVWGALLGG--CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 439 ~p----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.| +...-|.|..+ +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|..++..+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 65 33456666666 5689999999998888889999 7999999999999999999999999874
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0023 Score=52.20 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=76.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChH
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PME-PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFD 493 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 493 (569)
...-+...|++++|..+|+-+ -.. -+..-|..|..++...+++++|+..|..+..+.++||......+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999877 223 366678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 038890 494 DVKKTRNLMKE 504 (569)
Q Consensus 494 ~A~~~~~~m~~ 504 (569)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0018 Score=59.96 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR-AGLFSEAERLIRSM--PMEPDVFVWGALLGG 451 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 451 (569)
.+|..+++.+.+.+..+.|..+|.++.+...+ +..+|-.....-.+ .++.+.|..+|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999844333 34445544444333 56777799999998 444577889999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...++.+.|..+|++++..-|... ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 68999999999999999999999888654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00019 Score=40.88 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0035 Score=49.07 Aligned_cols=87 Identities=16% Similarity=-0.019 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHHH
Q 038890 416 MIDILSRAGLFSEAERLIRSM---PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL---NHAFYVNLCDMYA 487 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 487 (569)
+..++-..|+.++|+.+|++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445556667777777777766 32222 235556666777777777777777777776666 5555566666777
Q ss_pred HcCChHHHHHHHHHH
Q 038890 488 KAGRFDDVKKTRNLM 502 (569)
Q Consensus 488 ~~g~~~~A~~~~~~m 502 (569)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.11 Score=48.74 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQM 454 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (569)
.+.+.-+.-|...|+...|.++-.+.. -|+...|-..+.+++..++|++-..+... +-++..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 345555666777888888777655544 48999999999999999999998887654 2345778889999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 455 HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999988881 1255677889999999998865443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.18 Score=50.58 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=74.4
Q ss_pred CCCcccHHHHHHHHHccCCcHHHHHHHHHHHH-hCCCC--------cHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 038890 134 SPDCLTFPFLLKECTKRLDGLVGASVYGQVVK-FGVCD--------DVFVQNSVISLFMACGFVTSARMLFDEMSNRDVV 204 (569)
Q Consensus 134 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 204 (569)
.|.+..|..+.......-+++.|+..|-+... .|++. +...-.+=+.+ --|.+++|+++|-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 37777888887777777777777777655433 12221 11111112222 24788888888888777664
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHc
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKKR-----NIFSWNSIITGFVQGGRAREALELFQEM 260 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m 260 (569)
.+..+.+.||+-.+.++++.-... -...|+.+...+.....|++|.+.|..-
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677778888887777664321 1245777777777777777777766553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0022 Score=61.85 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPKK------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
......+++......+.+.+..++.+.... ...+..++++.|...|..+.++.++..=...|+-||..+++.|+
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 333344444444444444444444443321 12233455555555555555555555555555555555555555
Q ss_pred HHHHccCCHHHHHHHHHHhH
Q 038890 382 SACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~ 401 (569)
..+.+.|++..|.++...|.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHhhcccHHHHHHHHHHHH
Confidence 55555555555555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.017 Score=47.10 Aligned_cols=85 Identities=8% Similarity=-0.121 Sum_probs=40.4
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|++++|..+|+.+.... +.+...|..|.-++-..|++++|+..|... .+.| |+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 344455555555555444221 233344445555555555555555555544 2222 334444455555555555555
Q ss_pred HHHHHHHhh
Q 038890 462 EKVAQYLID 470 (569)
Q Consensus 462 ~~~~~~~~~ 470 (569)
.+.|+.++.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.034 Score=52.07 Aligned_cols=81 Identities=11% Similarity=-0.142 Sum_probs=45.7
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHH
Q 038890 146 ECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 222 (569)
++.+..++..|+..+...++..+. +..-|..-+..+...|++++|.--.+.-.+ .....+.-.-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 345566777888888888887654 455555555566666777766654443333 1222333334444455555555
Q ss_pred HHHHH
Q 038890 223 LDLFR 227 (569)
Q Consensus 223 ~~~~~ 227 (569)
...|+
T Consensus 137 ~~~~~ 141 (486)
T KOG0550|consen 137 EEKLK 141 (486)
T ss_pred HHHhh
Confidence 55544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.2 Score=50.76 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGC 452 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 452 (569)
...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-+... .+.-|.-++.+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 33445555666677889999988877766 5888889888999999999999888888763 245567788899
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.+.|+.++|.+++-+..... ....+|.+.|++.+|.++--+
T Consensus 755 ~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 99999999998887644322 567788999999998876543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00018 Score=41.03 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=27.7
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCC
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGI 133 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~ 133 (569)
.+||.++++|++.|+++ +|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~------~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFE------EALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHH------HHHHHHHHHhHCcC
Confidence 47999999999999999 99999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00043 Score=48.45 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
.|++++|..+|+.+.... +-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555554332 234444444555555555555555555555
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.043 Score=49.56 Aligned_cols=184 Identities=10% Similarity=-0.033 Sum_probs=102.5
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH----HHHHHHHHccCCcHHHHHHHHHHHHhCCCC
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF----PFLLKECTKRLDGLVGASVYGQVVKFGVCD 170 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 170 (569)
+...+-.....+...|++. +|++.|+.+... -|+.... ..+..++.+.++++.|...+++.++.-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~------~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWK------QAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 3333333444556778888 999999999874 3544322 234566778899999999999998875543
Q ss_pred cHhHHHHHHHHHHh--cC---------------CHH---HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 171 DVFVQNSVISLFMA--CG---------------FVT---SARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 171 ~~~~~~~l~~~~~~--~g---------------~~~---~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
....+...+.+.+. .+ +.. .|...|+ .++.-|=...-..+|...+..+.
T Consensus 103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~-----------~li~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS-----------KLVRGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH-----------HHHHHCcCChhHHHHHHHHHHHH
Confidence 33333333443331 11 111 2222222 23333333333344444333333
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038890 231 KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYL 299 (569)
Q Consensus 231 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 299 (569)
..=...--.+...|.+.|.+..|..-++.+.+. -.+.+........+..+|...|..++|..+...+
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 221122224556778888888888888877642 2333444556666677777777777776665544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.057 Score=53.44 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGC 452 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 452 (569)
..+...+...+-+...+..|-++|..+-. ...+++.....++|++|..+-+.. ...||+. ......+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy--~pyaqwL 814 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY--MPYAQWL 814 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc--chHHHHh
Confidence 34555555555566667777777777653 234666777788888888887777 4444432 2233334
Q ss_pred HhcCCHHHHHH
Q 038890 453 QMHGNVELGEK 463 (569)
Q Consensus 453 ~~~~~~~~a~~ 463 (569)
+...++++|.+
T Consensus 815 AE~DrFeEAqk 825 (1081)
T KOG1538|consen 815 AENDRFEEAQK 825 (1081)
T ss_pred hhhhhHHHHHH
Confidence 44444444444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0035 Score=57.04 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHH
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCD 484 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 484 (569)
|...+..+.+.|++++|+..|+.+ ...|+. ..+..+...+...|++++|...|+.+.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556666666666665 223322 345556666666777777777777776665553 344444566
Q ss_pred HHHHcCChHHHHHHHHHHHHC
Q 038890 485 MYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++...|++++|..+++.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777777766553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.04 Score=49.77 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+..-|.+.|.+..|..-++.+++.-|.+ ..+...++.+|.+.|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4455888999999999999999987764 4557778899999999999999877654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0048 Score=59.56 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=91.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAE--GVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYAC 415 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..++..=. .+|+=||..+++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHHH
Confidence 4445566677777777888999999888764 222234566799999999999999999999888 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 038890 416 MIDILSRAGLFSEAERLIRSM---PMEPDVFVWGALLGGCQMH 455 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 455 (569)
||+.+.+.|++..|.++...| +.-.+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999888 3334445555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=46.48 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG-NVELGEKVAQYLIDLDP 473 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 473 (569)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777777888888888888888777 4445 4557777777888888 68888888888887776
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.007 Score=45.58 Aligned_cols=81 Identities=12% Similarity=-0.007 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCC-CccHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHhCCCC
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMV-KPDKITIASVLSACAYLG--------AIDHGKWVHGYLRRSGLDC 306 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~ 306 (569)
+....|..+...+++.....+|+.++ ..|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...++.|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslk----RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP 102 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLK----RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP 102 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHH----hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC
Confidence 34455666777799999999999999 7788 899999999999887643 2345677899999999999
Q ss_pred cchhHHHHHHHHHh
Q 038890 307 DVVIGTALVDMYGK 320 (569)
Q Consensus 307 ~~~~~~~l~~~~~~ 320 (569)
+..+|+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00038 Score=40.47 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=30.7
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 465 AQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 465 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0083 Score=50.99 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
.|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555566666666666666654322211 23455555666666666666666666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.014 Score=45.67 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=62.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGVRPN--HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMI 417 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~ 417 (569)
.+..++-..|+.++|+.+|++....|+... ...+..+..++...|++++|..+|+.....+ |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 445667778888888888888888776654 2456667777888888888888888887543 32 22223344
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038890 418 DILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~ 436 (569)
.++...|+.++|++.+-..
T Consensus 83 l~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 5667778888887776543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.032 Score=46.20 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=76.9
Q ss_pred CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHH
Q 038890 133 ISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-----RDVVSWN 207 (569)
Q Consensus 133 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 207 (569)
+.|+...-..|..++...|+..+|...|.+...--+..|....-.+.++....+++..|...++++-+ +++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 44666666677777777888888888877776543445666666777777777777777777777655 2344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHH
Q 038890 208 AMIIGYLRSGDLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
.+.+.+...|...+|+..|+.... |+...--.....+.++|+.+++..-+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 556666666666666666666553 333322222333445555544443333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.25 Score=47.06 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFV-WGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~ 451 (569)
...|...+.+..+..-.+.|..+|-++.+..-+.+++..+++++..++ .|+..-|..+|+-- ..-||... -+..+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 456777888888888899999999999954436788999999999776 67888899998865 33455443 3556666
Q ss_pred HHhcCCHHHHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 452 CQMHGNVELGEKVAQYLIDLDP--LNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+...++-+.|..+|+..++.-. .-...|..++.--..-|+...+..+=++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 7788999999999997665322 224678888877777888877776655554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0085 Score=45.14 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=52.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhHHhcCCCCCHhHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGV-RPNHVTFVGLLSACAHSG--------LVEKGRWCFVMMRHVYLVEPHVYHYA 414 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (569)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-..+.+++.+. ..+++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHHH
Confidence 345555566888888888888888888 788888888887765432 2334556666666 455677777777
Q ss_pred HHHHHHHH
Q 038890 415 CMIDILSR 422 (569)
Q Consensus 415 ~l~~~~~~ 422 (569)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 76666543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.038 Score=48.48 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=104.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--------PMEPDVFVWGA 447 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~ 447 (569)
..+.++.++.-.|.+.-....+.+..+.+ -+.++.....|++.-.+.|+.+.|..+|++. +..-+......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44566777777888988999999998644 2456778888999999999999999999855 22223333334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRK 509 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (569)
....+.-++++..|...+.++...+|.++.+.++-+-++.-.|+..+|.+.++.|.+.-..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 44456678899999999999999999999998888878888899999999999998765443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0028 Score=53.99 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHhhcC--CCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc------------
Q 038890 84 ATNVFSHI--KRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK------------ 149 (569)
Q Consensus 84 A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~------------ 149 (569)
-...|+.. ..++-.+|..++..|.+.. ....|+.+-....+..|.+-|+.-|..+|+.||..+=+
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~-~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRD-VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcC-CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 34555555 4577888888888887765 44567777888889999999999999999999987643
Q ss_pred ----cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHhhc
Q 038890 150 ----RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFV-TSARMLFDEM 198 (569)
Q Consensus 150 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 198 (569)
-.+-+-|++++++|...|+-||..++..|+.++++.+.. .+..++.-+|
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 124567899999999999999999999999999887753 3344443333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.3 Score=46.43 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCC-------ChhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKK-------DTLAWTAMISVFAL---NGYGKEAFDTFREMEAEGVRPNHVTFV 378 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~ 378 (569)
.+...++-.|....+++...++.+.+... ....-.....++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33445666788889999999999988764 22333344556666 789999999999876666677888888
Q ss_pred HHHHHHHc---------cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHH----HHHHHH---HhC------
Q 038890 379 GLLSACAH---------SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFS----EAERLI---RSM------ 436 (569)
Q Consensus 379 ~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~------ 436 (569)
.+.+.|-. ....++|+..|.+.-+ +.|+...--.++..+...|... +..++- ...
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 87776532 2235667777765542 3454433223333333334321 222222 111
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 437 -PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 437 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.-..|-..+.+++.++.-.|+.+.|.+.++++.+..|+..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2234666777888888889999999999999998887754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.014 Score=53.06 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=72.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP----DVFVWG 446 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~ 446 (569)
.|...+....+.|++++|...|+.+.+.+ |+ ...+..+..+|...|++++|...|+.+ ...| ....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44444444456688888888888888655 33 246677888888888888888888887 2223 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
.+...+...|+.+.|..+|+.+++..|.+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6667778899999999999999998888653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0015 Score=40.76 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
.++..+...+...|++++|+++++++++..|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999998888764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.008 Score=51.33 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=59.0
Q ss_pred HHHhhC--CCCChhHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------------
Q 038890 329 GVFKEM--PKKDTLAWTAMISVFAL-----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG------------- 388 (569)
Q Consensus 329 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------- 388 (569)
..|+.. ...+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566677777777664 4777888888899999999999999999998875421
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 389 ---LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 389 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
+-+-|++++++|. .+|+-||..++..+++.+++
T Consensus 115 yp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhcc
Confidence 2234444555554 44455555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.056 Score=47.44 Aligned_cols=130 Identities=10% Similarity=0.048 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHH-
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTA- 313 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 313 (569)
.+.+.++..+.-.|.+.-....++++. ....+.++.....+.+...+.|+.+.|...+++..+..-..+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi----~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVI----KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHH----HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 455677777888888888888998887 555566788888888888899999999999987776543444433333
Q ss_pred ----HHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038890 314 ----LVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 314 ----l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
....|...+++..|...|.++... ++..-|.-.-+..-.|+..+|++.++.|...
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334566677888888888877654 4455555555556678888899988888874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0038 Score=44.28 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..|.+.+++++|+++++.+ ...| +...+......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5678888999999988888 5555 5567777888888999999999999999999888765543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0048 Score=59.05 Aligned_cols=63 Identities=13% Similarity=-0.094 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA---FYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
...++.+..+|...|++++|+..|+++++++|++.. +|.+++.+|...|++++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555442 255555555555555555555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0024 Score=46.07 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDL----DPL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+++.+...+...|++++|+..++++.+. ++. ...++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888999888888888753 222 245688899999999999999999887653
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.042 Score=42.66 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
+...|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+.+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34467777777777777653 245556666655555566666666666665433221 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
....+-.++ .+.......+..+..+|+-++-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++++..++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333333332 244455667788889999999999999998877778999999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.54 Score=46.75 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=131.6
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
+..+|...+..-...|+.+.+.-+|+...-+ =...|-..+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567778888888999999999999988765 2345666666666679999998888776654332222221111222
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-HhHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPH-VYHYACMIDILSRAGLFSEAE---RLIRSM-PMEPDVFVWGALLG-----GCQ 453 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~~~ 453 (569)
+-..|++..|..+++.+.... |+ +..-..-+....+.|..+.+. +++... ..+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 446789999999999998654 44 333344555667888888887 444444 11222222222222 244
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR---FDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~ 510 (569)
-.++.+.|..++.++.+..|++...|..++......+. .+--.-+...+...-+.++
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~ 512 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFD 512 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhcccc
Confidence 57899999999999999999999999999988777653 2323334444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0066 Score=50.17 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-----HCCCCCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK-----ERGIRKE 510 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~ 510 (569)
+...++..+...|++++|.+.++++...+|.+...+..++.+|.+.|+..+|.+.|+++. +.|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 455667778899999999999999999999999999999999999999999999999884 4588876
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.091 Score=47.49 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 038890 371 RPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG---LFSEAERLIRSM-PMEP-DVFVW 445 (569)
Q Consensus 371 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 445 (569)
+-|...|..|...|...|++..|...|....+.. ++++..+..+..++.... ...++..+|+++ ..+| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3467899999999999999999999999998665 467777777777765443 457889999999 5555 66777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
..|...+...|++.+|...|+.|.+..|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 7788889999999999999999999888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.026 Score=52.89 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=81.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
..++..+..++.+.+++..|+...... .. ++|...+..=..++...|+++.|...|+++.+.+|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 356788899999999999999998887 33 4577788888899999999999999999999999999998888988887
Q ss_pred HcCChHHH-HHHHHHHHHC
Q 038890 488 KAGRFDDV-KKTRNLMKER 505 (569)
Q Consensus 488 ~~g~~~~A-~~~~~~m~~~ 505 (569)
+..++.+. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77665555 7788888543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.85 Score=46.11 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=28.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
+....-.+..++...|.-++|.+.|-+...|. ..+..|...++|.+|.++-++..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444455556666666666665554443332 23344555556666665555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.14 Score=50.81 Aligned_cols=87 Identities=11% Similarity=0.143 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--Chh---------
Q 038890 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--DTL--------- 340 (569)
Q Consensus 272 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--------- 340 (569)
+..+...+...+.+...+..|.++|..+-+. ..++..+...++|++|..+-+..++- ++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 4445555555555666666777777666432 35667777788888888887777652 211
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 341 --AWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 341 --~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
-|...-.+|.+.|+..+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233466777888888888877654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0045 Score=44.63 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-------P-MEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
.+|+.+...|...|++++|+..|++. + ..|+ ..++..+..++...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666655 1 1122 34666677777777777777777777654
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0068 Score=56.36 Aligned_cols=256 Identities=11% Similarity=-0.003 Sum_probs=141.2
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCC----cccHHHHHHHHHccCCcHHHHHHHHHHHH----hCCCC-cHhHH
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISPD----CLTFPFLLKECTKRLDGLVGASVYGQVVK----FGVCD-DVFVQ 175 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~~ 175 (569)
-+++.|+.. ..+..|+..++.|- -| ...|..|.++|.-.+++++|+++...=+- .|-.. .....
T Consensus 26 RLck~gdcr------aGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 26 RLCKMGDCR------AGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHhccchh------hhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 356667776 77777777777652 12 22455566666667777777766432111 11000 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 038890 176 NSVISLFMACGFVTSARMLFDEMSN---------RDVVSWNAMIIGYLRSGD--------------------LDVALDLF 226 (569)
Q Consensus 176 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 226 (569)
..|...+--.|.+++|..+-.+-.. .....+..+...|...|+ ++.|.+.|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 2233344445555555543222111 111223334444443222 22333333
Q ss_pred HhcCC---------CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCC-CccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 227 RRMKK---------RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMV-KPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 227 ~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
.+-.+ .-...|..|.+.|.-.|+++.|+..-+.-+.-.-+-|- ......+..+.+++.-.|+++.|.+.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 32111 11235777777778888888887665543210001111 123456777888888889999888887
Q ss_pred HHHHH----hCC-CCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCChhHHHHHH
Q 038890 297 GYLRR----SGL-DCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---------KDTLAWTAMISVFALNGYGKEAFDTF 362 (569)
Q Consensus 297 ~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (569)
+.... .|- ......+-+|.+.|.-..++++|+.++.+-.. -...++.+|..+|...|..++|+...
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 76443 221 23455667788888888888888888765321 13456777888888888888888776
Q ss_pred HHHHH
Q 038890 363 REMEA 367 (569)
Q Consensus 363 ~~m~~ 367 (569)
+.-++
T Consensus 339 e~hl~ 343 (639)
T KOG1130|consen 339 ELHLR 343 (639)
T ss_pred HHHHH
Confidence 65543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.16 Score=44.67 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=30.5
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISPDC----LTFPFLLKECTKRLDGLVGASVYGQVVKFG 167 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 167 (569)
.+...|++. +|++.|+.+...- |+. .....++.++.+.|+++.|...++.+++.-
T Consensus 14 ~~~~~g~y~------~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 14 EALQQGDYE------EAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHCT-HH------HHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHCCCHH------HHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345556666 7777777776642 221 133344555666777777777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.59 Score=41.00 Aligned_cols=177 Identities=12% Similarity=0.049 Sum_probs=74.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.....+...|++.+|...|+.+...- .+-+--....-.++.++.+.|+++.|...++.+.+.-......-+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445556666666666666665321 1111122333445556666666666666666665542111111111111111
Q ss_pred HhcCChHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 038890 319 GKCGCVERAYGVFKEMPKKD-------TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 391 (569)
+......... ....| ...+..++.-|=...-..+|...+..+... =...-..+..-|.+.|.+.
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HH
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHH
Confidence 1100000000 00111 012233333333334444444444333221 0011122445567777777
Q ss_pred HHHHHHHHhHHhcCCCCCH----hHHHHHHHHHHHcCCHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHV----YHYACMIDILSRAGLFSEA 429 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 429 (569)
.|..-++.+.+.+ |+. .....++.+|.+.|..+.|
T Consensus 159 aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 159 AAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777654 322 3445566667777766643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.04 Score=52.96 Aligned_cols=99 Identities=8% Similarity=-0.025 Sum_probs=67.1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
.+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|++.++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 45677888888888888888888888886 666764 35888888888888888888888888886322 12111
Q ss_pred HH--HHHHcCChHHHHHHHHHHHHCCCCC
Q 038890 483 CD--MYAKAGRFDDVKKTRNLMKERGIRK 509 (569)
Q Consensus 483 ~~--~~~~~g~~~~A~~~~~~m~~~g~~~ 509 (569)
.. .+....+.++..++++.+...|.+.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1112234446666777777766643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.051 Score=51.07 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
..++..+..++.+.+++..|++...+.++.+|+|..++..-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467778888999999999999999999999999999999999999999999999999999873
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.075 Score=42.11 Aligned_cols=52 Identities=6% Similarity=0.087 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 369 GVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 369 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3557777777777777777777777777777777777666667776666544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=41.14 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=71.0
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH-HHHHHHHHHHcCC
Q 038890 418 DILSRAGLFSEAERLIRSM----PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF-YVNLCDMYAKAGR 491 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~ 491 (569)
....+.|++++|++.|+.+ +..| ....-..++.++.+.++++.|...+++.++++|.++.+ |.....++.....
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3345678888888888877 2222 33456678888999999999999999999999887644 3333333332222
Q ss_pred hHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCc
Q 038890 492 FDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYI 559 (569)
Q Consensus 492 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 559 (569)
.+ ..+..+- +...| -.....+...|++++....++-|.+|.
T Consensus 98 ~~---~~~~~~~--~~drD----------------------~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 98 DE---GSLQSFF--RSDRD----------------------PTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred hh---hHHhhhc--ccccC----------------------cHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 11 2222222 22111 124567788888888877777776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.063 Score=47.85 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
|..++...|++++|..+|..+.+..|. .|..+.-|+.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555555554433 234455555555555555555555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.1 Score=42.89 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhHHhcCCCCCHhHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEG---VRPNHVTFVGLLSACAH---SGLVEKGRWCFVMMRHVYLVEPHVYHYA 414 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (569)
+...++.+|-...+++..+++.+.+.... +.-....-....-++.+ .|+.++|..++..+.... -.+++.+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHH
Confidence 34456667888999999999999998641 11122222334455666 899999999999855333 367888888
Q ss_pred HHHHHHH----H-----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH----HHHhhcC----
Q 038890 415 CMIDILS----R-----AGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGN-VE---LGEKVA----QYLIDLD---- 472 (569)
Q Consensus 415 ~l~~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~~~---- 472 (569)
.+...|. . ....++|++.|.+. .+.||...=-.++..+...|. ++ +..++- ..+.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 8887764 2 22478899999888 666765433333333333332 22 222222 1111221
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
-.+...+.+++.+..-.|++++|.+..++|....
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2355667889999999999999999999998764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.74 Score=46.25 Aligned_cols=159 Identities=12% Similarity=0.082 Sum_probs=101.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEG-VRPNH-----VTFVGLLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHY 413 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 413 (569)
.++....-.||-+.+++.+.+..+.+ +.-.. -.|...+..++. ..+.+.+.++++.+.+.+ |+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 34444444566666666666544321 11100 123333333332 457788999999998765 665554
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHH-HHHH
Q 038890 414 A-CMIDILSRAGLFSEAERLIRSM-PM-----EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVN-LCDM 485 (569)
Q Consensus 414 ~-~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 485 (569)
. .-.+.+...|++++|++.|++. .. +.....+.-+...+....++++|.+.+.++.+...-+..+|.. .+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 3456677889999999999976 11 1233456667777888999999999999999876555555544 4445
Q ss_pred HHHcCCh-------HHHHHHHHHHHHC
Q 038890 486 YAKAGRF-------DDVKKTRNLMKER 505 (569)
Q Consensus 486 ~~~~g~~-------~~A~~~~~~m~~~ 505 (569)
+...|+. ++|.++++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 6677888 8888888887443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.13 Score=47.46 Aligned_cols=161 Identities=8% Similarity=0.025 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEA-EGVRPN---HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYH 412 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 412 (569)
.|..+..++-+..++.+++.+-+.-.. .|..|. -....++..++...+.++++++.|+...+...-..| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444433322 122221 122333555666666777777777666532221112 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-------PMEPDVF-----VWGALLGGCQMHGNVELGEKVAQYLIDLD------PL 474 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~ 474 (569)
+-.|...|.+..+.++|.-+..+. +++.-.. ....+.-++...|....|.+..+++.++. +.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777665554443 2221111 22334445666777777777776665522 22
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 475 NHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
.......+++.|...|+.+.|..-|+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 334455667777777777666665554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.048 Score=44.99 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=17.9
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIR 434 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (569)
...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.++|+
T Consensus 73 ~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 33444444444444443222 2233344444444444444444444433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.6 Score=41.02 Aligned_cols=273 Identities=16% Similarity=0.124 Sum_probs=159.8
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHHH--HHHhCCChHHHHHHHHHchhccccCCCCccHHHHH----HHHHHHHcc
Q 038890 216 SGDLDVALDLFRRMK---KRNIFSWNSIIT--GFVQGGRAREALELFQEMQSSSVEEMVKPDKITIA----SVLSACAYL 286 (569)
Q Consensus 216 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~----~ll~~~~~~ 286 (569)
.||-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|. -|+.|-. .|.-...+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl---------~dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML---------DDPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh---------cChHHHHHhHHHHHHHHHhc
Confidence 345555555444332 223333333332 3345677777777777776 2223322 222223456
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhH--HHHHHHHH--H-HcCChh
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLA--WTAMISVF--A-LNGYGK 356 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~--~~~li~~~--~-~~g~~~ 356 (569)
|..+.|..+-+..-..- +.-.......++..+..|+|+.|+++.+.-.. ++..- --.|+.+- . -..+..
T Consensus 168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 77777776666655432 22344566777777888888888888775432 22211 11122111 1 123455
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 357 EAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 357 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
.|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+.|+.. ..-+++
T Consensus 247 ~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta--~dRlkR 317 (531)
T COG3898 247 SARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA--LDRLKR 317 (531)
T ss_pred HHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH--HHHHHH
Confidence 55555444433 566643 3334457788999999999999988743 46666553333 34555532 222222
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC
Q 038890 436 M----PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA-GRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 436 ~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~ 508 (569)
. ..+| +......+..+....|++..|..--+.+....|.. .+|..|++.-... |+-.++..++-+.+..-..
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 2 3455 45677777888889999999998888888888874 5777777776554 9999999888877664433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.7 Score=41.00 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=72.2
Q ss_pred HHHHHHHHH--ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHH--HHhcCCHHHHHHHHhhcCC-CChh--HHHHHHHH
Q 038890 140 FPFLLKECT--KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISL--FMACGFVTSARMLFDEMSN-RDVV--SWNAMIIG 212 (569)
Q Consensus 140 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~ 212 (569)
|..|=.++. -.||-..|.+.-.+..+. +..|....-.|+.+ -.-.|+++.|.+-|+.|.. |... ....|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 444444433 346777777666554432 22233333334433 3446888888888888876 3222 23333334
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 213 YLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
--+.|+.+.|.+.-++.-. | -...+...+...+..|+|+.|+++++.-.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4567888877777666543 2 23466777888888888888888887765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.18 Score=39.96 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 038890 406 VEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQ 453 (569)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 453 (569)
+.|+..+..+++.+|+..|++..|+++++.. +++.+..+|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666666665555 44445556666665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.21 Score=38.86 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=54.9
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCh---hHHHHHHHHHHHcCCh
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD-PLNH---AFYVNLCDMYAKAGRF 492 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 492 (569)
++...|+.+.|++.|.+. .+-| ....||.-..++.-+|+.++|++-++++.++. +... ..|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455666777777776665 3332 55566766777777777777777777776643 3222 2244445566667777
Q ss_pred HHHHHHHHHHHHCCC
Q 038890 493 DDVKKTRNLMKERGI 507 (569)
Q Consensus 493 ~~A~~~~~~m~~~g~ 507 (569)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777777777666653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.54 Score=46.52 Aligned_cols=161 Identities=16% Similarity=0.053 Sum_probs=95.1
Q ss_pred HHHHhCCChHHHHHHHH-HchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 242 TGFVQGGRAREALELFQ-EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 242 ~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
....-.++++.+.+... .-. ...++ ....+.++.-+.+.|..+.|.++..+- ..-.+...+
T Consensus 269 k~av~~~d~~~v~~~i~~~~l----l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~ 330 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNL----LPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQ 330 (443)
T ss_dssp HHHHHTT-HHH-----HHHHT----GGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhh----cccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHh
Confidence 34455677777666665 111 11122 344666777777778777777664322 123345667
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 321 CGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
.|+++.|.++.++.. +...|..|.......|+++-|.+.|.+..+ +..|+-.|...|+.+.-.++.+..
T Consensus 331 lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 331 LGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp CT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 888888888876655 566888888888888888888888876432 455555667778877776666665
Q ss_pred HHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038890 401 RHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM 438 (569)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (569)
.... -++....++.-.|+.++..+++.+.+.
T Consensus 400 ~~~~-------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 400 EERG-------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHTT--------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHcc-------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 5322 145555566667788888877777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.36 Score=46.76 Aligned_cols=144 Identities=12% Similarity=0.012 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHcc---------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 354 YGKEAFDTFREMEA-EGVRPN-HVTFVGLLSACAHS---------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 354 ~~~~A~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
..+.|..+|.+... ..+.|+ ...|..+..++... .+..+|.++-+...+.. +.|+.....+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 44667777887762 224554 34566665554322 23344555555555433 4556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCChHHHHHH
Q 038890 423 AGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF--YVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~ 498 (569)
.++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++.++.|....+ ....++.|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 77777777777777 555653 355555555666777778888777777777764332 22233344443 45666665
Q ss_pred HH
Q 038890 499 RN 500 (569)
Q Consensus 499 ~~ 500 (569)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 53
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1 Score=40.78 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=76.0
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGA---LLGGCQMHGNVE 459 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 459 (569)
.....|++..|..+|....... +-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456778888888887777443 33455666778888888888888888888743322222222 223333333333
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 460 LGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+... ++.-...+|+|...-..++..|...|+.++|.+.+-.+..+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 22233457888888888888888888888888876666544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.21 Score=45.69 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=115.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHH----HHHHHHHHHcCC
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHY----ACMIDILSRAGL 425 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 425 (569)
.-.|+..+|-..++++++. .+-|...+.-.-.+|...|+.+.-...++++.... .++...| ..+..++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 3467888888888888875 45567777777889999999999999999887543 3555444 344556678999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHHcCChHHHHHHH
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN----HAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
+++|++.-++. .+.| |...-.+....+...|++.++.++..+-...-..+ ...|=..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888 5554 66677788888889999999999888765432221 122344555677889999999999
Q ss_pred HHHHHCCCCCC
Q 038890 500 NLMKERGIRKE 510 (569)
Q Consensus 500 ~~m~~~g~~~~ 510 (569)
+.-.-.....+
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 97755544444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.2 Score=44.81 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=71.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH---VYHYACMIDILSRAGLFSEAERLIRSM----PMEP-DVFVWGA 447 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 447 (569)
.|+.-+.. .+.|++..|...|....+.+ +-+ ...+-.|..++...|++++|..+|..+ +..| -+..+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555543 45677888888888877654 221 244556888888888888888888777 3333 3456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
|.....+.|+.++|...|+++.+..|.++.+-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77788888888999999998888888876543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2 Score=39.09 Aligned_cols=172 Identities=15% Similarity=0.065 Sum_probs=113.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 038890 326 RAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYL 405 (569)
Q Consensus 326 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 405 (569)
...++++.+..+....-..-.......|+..+|..+|......... +......+.+++...|+.+.|..++..+.....
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 4445555554442222223344566789999999999988875322 345666788899999999999999998764321
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCChhHHHHH
Q 038890 406 VEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD--PLNHAFYVNL 482 (569)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l 482 (569)
.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+.+.+ -.+..+-..+
T Consensus 200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 1112222334556666666665555555554456 66677778888899999999998888777644 5577788888
Q ss_pred HHHHHHcCChHHHHHHH
Q 038890 483 CDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~ 499 (569)
+..+.-.|.-+.+..-+
T Consensus 279 le~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 279 LELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88888888555444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.43 Score=39.31 Aligned_cols=87 Identities=8% Similarity=-0.061 Sum_probs=69.5
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 038890 382 SACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~ 459 (569)
.-+...|++++|..+|.-+.. .. ..+..-|..|..++-..+++++|+..|... -. .-|+..+.....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 345678999999999999884 32 456677888999999999999999999877 11 234445666788899999999
Q ss_pred HHHHHHHHHhh
Q 038890 460 LGEKVAQYLID 470 (569)
Q Consensus 460 ~a~~~~~~~~~ 470 (569)
.|...|+.+++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999888
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.14 Score=43.08 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=68.0
Q ss_pred HHHHHcCCHHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 418 DILSRAGLFSEAERLIRSM--PMEP-----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~--~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
.-+...|++++|..-|.+. -.++ ....|..-..++.+.+.++.|+.-..++++++|....++..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3355677777777777666 1111 22345555567788899999999999999999998888888889999999
Q ss_pred ChHHHHHHHHHHHHCC
Q 038890 491 RFDDVKKTRNLMKERG 506 (569)
Q Consensus 491 ~~~~A~~~~~~m~~~g 506 (569)
++++|++-|+++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.7 Score=37.12 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhcCCCChh
Q 038890 458 VELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~ 477 (569)
...|..-|+.+++..|++..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 45677777777777787653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.30 E-value=3.6 Score=41.22 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPDVFVWGAL 448 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l 448 (569)
..+|...+.--...|+.+.+.-+|+...--. ..-...|-..+......|+.+-|..++... +..|....+.+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c--A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC--ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3566666766677788887777777665211 122345555555555667777777776655 333444443333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+. -..|++..|..+++.+.+.-|....+-..-+....+.|+.+.+.
T Consensus 375 f~--e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FE--ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HH--HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 32 34678888888888887655665555555556666777777777
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.2 Score=44.07 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=103.1
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALD 224 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (569)
....-.++++.+.++.+.-.-. +..+....+.++..+-+.|..+.|+++... . ..-.....+.|+++.|.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHH
Confidence 3345568888876665411111 112345578888999999999999988442 1 234566778999999988
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 038890 225 LFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 304 (569)
+-++.. +...|..|.....+.|+++-|.+.|.+.. -+..++-.|.-.|+.+...++.+.....|.
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-------------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 877665 56689999999999999999999999875 245566667778888887777777766652
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhC
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEM 334 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 334 (569)
++....++.-.|+.+++.+++.+.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555667777777776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.6 Score=42.47 Aligned_cols=141 Identities=11% Similarity=0.000 Sum_probs=78.5
Q ss_pred hHHHHHHHhhCC---CCC---hhHHHHHHHHHHHc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038890 324 VERAYGVFKEMP---KKD---TLAWTAMISVFALN---------GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG 388 (569)
Q Consensus 324 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 388 (569)
.+.|..+|.+.. +-| ...|..+..++... .+..+|.++-++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 566777777766 333 33444443333221 22345556666666543 235666666666666667
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVF---VWGALLGGCQMHGNVELGEKV 464 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~~~ 464 (569)
+++.|...|+....-. +....+|........-.|+.++|.+.+++. ...|... .....+..|. ....+.|+.+
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHH
Confidence 7888888887777432 233455555666666678888888877774 5555432 2222222333 3355666666
Q ss_pred HHHH
Q 038890 465 AQYL 468 (569)
Q Consensus 465 ~~~~ 468 (569)
+-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 6543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.25 Score=44.02 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 038890 327 AYGVFKEMP--KKDTLAWTAMISVFALN-----GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG----------- 388 (569)
Q Consensus 327 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 388 (569)
.+..|..+. ++|-.+|...+..|... ++++-....++.|.+.|+.-|..+|+.|+..+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 56777888888777653 567777788899999999999999999998765532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH
Q 038890 389 -----LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 389 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (569)
+-+-++.++++|. .+|+.||-.+-..|+.++.+.+..
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 3345788999998 899999999999999999888764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.2 Score=36.80 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=26.3
Q ss_pred HhcCCHHHHHHHHHHHhh-cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLID-LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
...|.++....-.+-+.. .+|-....-..|+-+-.+.|++.+|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555444443332 2233344455555555566666666666665544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.7 Score=37.29 Aligned_cols=196 Identities=17% Similarity=0.083 Sum_probs=114.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLS 382 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 382 (569)
..........+...+++..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34445555556666666666666555432 233445555555556666677777777666533222 111122222
Q ss_pred -HHHccCCHHHHHHHHHHhHHhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 038890 383 -ACAHSGLVEKGRWCFVMMRHVYLV--EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD--VFVWGALLGGCQMHG 456 (569)
Q Consensus 383 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~ 456 (569)
.+...|+++.+...+..... ..- ......+......+...++.+.+...+... ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56677777777777777643 210 012333334444456677777777777766 33333 456666677777777
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+++.+...+.......|.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777765555666666666666677777777766543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.61 E-value=3.8 Score=38.03 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=52.8
Q ss_pred hcCCHHHHHHHHHhcCC------CCh------hHHHHHHHHHHhCC-ChHHHHHHHHHchhc----cccCCCCccH----
Q 038890 215 RSGDLDVALDLFRRMKK------RNI------FSWNSIITGFVQGG-RAREALELFQEMQSS----SVEEMVKPDK---- 273 (569)
Q Consensus 215 ~~g~~~~A~~~~~~~~~------~~~------~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~----~~~~~~~p~~---- 273 (569)
+.|+++.|..++.+... |+. ..|+.-.. ..+.+ +++.|..++++..+. +-.....|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45566666666655542 111 12333333 33444 777777776665421 0011122222
Q ss_pred -HHHHHHHHHHHccCCHH---HHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 274 -ITIASVLSACAYLGAID---HGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 274 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
.++..++.++...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+.+.+.+.+|.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 34444555555554433 333344444322 12223444344444444555555555555544
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=29.78 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
.|..+...+...|++++|++.++++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.58 E-value=4.7 Score=38.96 Aligned_cols=150 Identities=10% Similarity=-0.063 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-CCCCCHhHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP---NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY-LVEPHVYHY 413 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 413 (569)
...+|..++..+.+.|.++.|...+.++...+..+ .......-+...-..|+..+|...++...... .-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 45567788888888888888888888877643221 22333334555667788888888887777411 101111111
Q ss_pred HHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 414 ACMIDILSRAGLFSEAERL-IRSMPMEPDVFVWGALLGGCQMH------GNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
..+...+.. ..+..... ........-..++..+...+... ++.+++...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000000112333334444444 7888999999999999998888888877766
Q ss_pred HHc
Q 038890 487 AKA 489 (569)
Q Consensus 487 ~~~ 489 (569)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.1 Score=34.82 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILS 421 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (569)
...++..+...+........++.+...+. .+....+.++..|++.+ .+.....++. ..+......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34566666667778888888888777653 45667777777777653 3344444442 122233445777788
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 422 RAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMH-GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+.+.++++..++.+++.. ...+..+... ++++.|.+++.+ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 888888888888887532 2222333333 778888887775 3456677777766543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.091 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34566666666677777777777777666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.7 Score=42.89 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc---cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC-----CCc
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP---DKITIASVLSACAYLGAIDHGKWVHGYLRRSGL-----DCD 307 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~ 307 (569)
.|-.+.+++-+.-++.+++.+-+.-.. ..|..| -......+..++...+.++++.+.|+.+.+... ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~---lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLG---LPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc---CCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 455566666666666666666655442 223333 112333456677777788888888887765321 223
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC-------CChh------HHHHHHHHHHHcCChhHHHHHHHHHHH----CCC
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK-------KDTL------AWTAMISVFALNGYGKEAFDTFREMEA----EGV 370 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~ 370 (569)
..++..|...|.+..|+++|.-+..+..+ .|.. +...|..++-..|....|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 56788899999999999888766554432 2222 233455567777888888877776543 443
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 371 RPN-HVTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 371 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
+|. ......+...|...|+.+.|..-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 332 2355667778888999998887777654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.44 E-value=6.2 Score=39.77 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhhcCC--CChhHHHHHH-HHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhCCChHHHHH
Q 038890 186 GFVTSARMLFDEMSN--RDVVSWNAMI-IGYLRSGDLDVALDLFRRMKKR-------NIFSWNSIITGFVQGGRAREALE 255 (569)
Q Consensus 186 g~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~ 255 (569)
.+.+.|.++++.+.+ |+...|...- +.+...|++++|++.|++.... ....+.-++-.+.-.++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345556666666555 5544443322 3344456666666666654321 11223334445555566666666
Q ss_pred HHHHch
Q 038890 256 LFQEMQ 261 (569)
Q Consensus 256 ~~~~m~ 261 (569)
.|..+.
T Consensus 327 ~f~~L~ 332 (468)
T PF10300_consen 327 YFLRLL 332 (468)
T ss_pred HHHHHH
Confidence 666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.33 Score=43.26 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=86.3
Q ss_pred hHHHHHhhcCC--CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc---------
Q 038890 82 SYATNVFSHIK--RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKR--------- 150 (569)
Q Consensus 82 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------- 150 (569)
-..+..|.... +++-.+|-.++..+... +....++.+--...++.|.+.|+.-|..+|..||+.+-+.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~-sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEK-SVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 34445566665 56777887777776544 2223445556677788999999999999999999876432
Q ss_pred -------CCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHhhcCC
Q 038890 151 -------LDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF-VTSARMLFDEMSN 200 (569)
Q Consensus 151 -------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 200 (569)
.+-+-+.+++++|...|+.||..+-..|+.++.+.|. ..+..+++-+|.+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2345688999999999999999999999999999886 3455555555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.9 Score=39.79 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=111.8
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHH
Q 038890 319 GKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFV----GLLSACAHSGLVE 391 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~ 391 (569)
...|+..+|-..++++.+ .|..++.-.=.++...|+.+.-...+++.... ..||...|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777777777777765 36777777778899999999988899888754 345554333 3344556889999
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM--EP----DVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p----~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
+|++.-++..+.+ +.|.-.-.++...+...|++.++.++..+-.. +. -...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999988887544 45666677888888999999999999887621 11 1123333334456678999999999
Q ss_pred HHHh--hcCCCChhHHH
Q 038890 466 QYLI--DLDPLNHAFYV 480 (569)
Q Consensus 466 ~~~~--~~~p~~~~~~~ 480 (569)
++-+ +.+.++.....
T Consensus 271 D~ei~k~l~k~Da~a~~ 287 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARD 287 (491)
T ss_pred HHHHHHHhhccchhhhh
Confidence 8644 46667766654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=7.3 Score=40.22 Aligned_cols=319 Identities=10% Similarity=0.010 Sum_probs=178.2
Q ss_pred CCCCCCcccHHH-----HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC---HHHHHHHHhhcCC--
Q 038890 131 TGISPDCLTFPF-----LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF---VTSARMLFDEMSN-- 200 (569)
Q Consensus 131 ~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-- 200 (569)
-|++.+..-|.. +|.-+...+.+..|.++-..+...-.. ...+|.....-+.+..+ -+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 356555554544 455566778888888887766332111 14667777777776632 2333344444444
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHchhccc-------
Q 038890 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKR--------NIFSWNSIITGFVQGGRAREALELFQEMQSSSV------- 265 (569)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~------- 265 (569)
....+|..+.+.--..|+++-|..+++.=+.. +..-+...+.-..+.|+.+-...++-.+.+.-.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999988765532 222344555666777777777666666542100
Q ss_pred cCCCCccHHHHHHHHH---------HHHccCCHHHHHHHH-HHHHH-hCCCCcchhHHHHHHHHHhcCChHHHH------
Q 038890 266 EEMVKPDKITIASVLS---------ACAYLGAIDHGKWVH-GYLRR-SGLDCDVVIGTALVDMYGKCGCVERAY------ 328 (569)
Q Consensus 266 ~~~~~p~~~~~~~ll~---------~~~~~~~~~~a~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~------ 328 (569)
....+.....|.-+++ .|....+......+. +.... ..+.+-..........+.+.....-..
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 0001111111222211 011111111111111 11000 000111111222333333333211111
Q ss_pred ----HHHhhCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 329 ----GVFKEMPKK-----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 329 ----~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
.+.+.+... ...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.++...+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 111111111 12344555667778899999988877654 47888888888999999999876665544
Q ss_pred hHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 400 MRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
.+ .+..|...+.+|.+.|+.++|..++-+.+-.+ -...+|.+.|++.+|.+..-+
T Consensus 741 kk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 33 25678889999999999999999999884332 456778888888888776544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=8.1 Score=40.60 Aligned_cols=116 Identities=8% Similarity=-0.065 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHV--YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
..+.+.|...+........+.+.. .++..+.......+...+|...++.. ....+......-+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345566777777665444333322 22333433333332245666666654 222233334444444456777777777
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 464 VAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 464 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.+..|-...........-+++++...|+.++|..+|+.+
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665433344555566677766677777777777765
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.10 E-value=3 Score=34.79 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=14.2
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccCCc
Q 038890 126 KQMLCTGISPDCLTFPFLLKECTKRLDG 153 (569)
Q Consensus 126 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 153 (569)
+.+.+.+++|+...|..++..+.+.|.+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3333445555555555555555555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=5.1 Score=37.14 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh----HHHHHHHHHc
Q 038890 201 RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRA----REALELFQEM 260 (569)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~m 260 (569)
+|.......+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44444444444444444332222222222334444444444445555442 3444455444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.1 Score=36.07 Aligned_cols=197 Identities=14% Similarity=0.018 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHH-H
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRS-GLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMIS-V 348 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~ 348 (569)
..+......+...+.+..+...+...... ........+......+...+++..+...+...... +......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555555444431 22333444445555555556666666666655432 1122222233 6
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHc
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRP----NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRA 423 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 423 (569)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+....... +. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc
Confidence 7778888888888888755 232 23344444444667788999999988888543 23 367788888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 424 GLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 424 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999988888 44554 445555555555777899999999999988876
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.96 E-value=12 Score=41.06 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=58.1
Q ss_pred CccHHHHHHHHHH----HHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHH---
Q 038890 270 KPDKITIASVLSA----CAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAW--- 342 (569)
Q Consensus 270 ~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 342 (569)
.|+...+..+..+ +.....++.|.-.|+..-+. ...+.+|..+|+|.+|+.+..++...-....
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 4566555555444 44566677776666554332 3456778888888888888887776533222
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 343 TAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
..|+.-+...+++-+|-++..+...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 5677777788888888777776553
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.89 Score=35.51 Aligned_cols=88 Identities=13% Similarity=-0.054 Sum_probs=51.6
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH---HHHHHHHHHHhcC
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVF---VWGALLGGCQMHG 456 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~l~~~~~~~~ 456 (569)
....|+.+.|++.|....... +.....||.-..++.-.|+.++|++-+++. +-+ ... .|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 445666666666666655322 445566666666666667777666666655 211 111 2223333466677
Q ss_pred CHHHHHHHHHHHhhcCCC
Q 038890 457 NVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~ 474 (569)
+.+.|..-|+.+.+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777777666644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.76 E-value=3.1 Score=33.80 Aligned_cols=128 Identities=14% Similarity=0.134 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC
Q 038890 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG 217 (569)
Q Consensus 138 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (569)
.....++..+...+.......+++.+.+.+. .+...++.++..|++.+. ......++. ..+.......++.|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 3455677777777888889999999888874 577888999999987643 444455442 233444555677777777
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhC-CChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSWNSIITGFVQG-GRAREALELFQEMQSSSVEEMVKPDKITIASVLSACA 284 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~ 284 (569)
-++++.-++.++.. |...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~----------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ----------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC----------CCHHHHHHHHHHHH
Confidence 77777777776643 22233333333 6677777766652 23445555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.18 Score=29.63 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999988854
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.9 Score=35.44 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCChhHH
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-------PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLIDL----DPLNHAFY 479 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~ 479 (569)
.|....+.+++...+++|-..+.+- .--|+. ..|...+-.+.-..|+..|+..++...++ .+++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3444555566666666665544433 112222 23444455555666777788777776553 36667777
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 038890 480 VNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~ 499 (569)
..|+.+|- .|+.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 77776664 46666666544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.49 E-value=13 Score=40.75 Aligned_cols=141 Identities=17% Similarity=0.083 Sum_probs=79.2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 038890 179 ISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
++.--+.|-+.+|+.++..=.+.-...|.+....+.....+++|.-.|+..-+. ...+.+|...|+|.+|+.+..
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHH
Confidence 333345555566555544322223344555556666677777777666665432 234567777888888888887
Q ss_pred HchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK 337 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 337 (569)
++. .+-.--..+-..|..-+...+++-+|-++..+.... ....+..|++...|++|.++-....+.
T Consensus 990 ql~-----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 990 QLS-----EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred hhc-----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccc
Confidence 774 111111111245556666677777776666655432 123445566677777777776555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.8 Score=36.19 Aligned_cols=62 Identities=6% Similarity=-0.057 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH--HHccCCcHHHHHHHHHHHHhC
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKE--CTKRLDGLVGASVYGQVVKFG 167 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g 167 (569)
..||.+.--+...|+++ .|.+.|+...+-+ |. .-|..+=++ +.-.|++..|.+=+...-+.+
T Consensus 100 ~vfNyLG~Yl~~a~~fd------aa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 100 EVFNYLGIYLTQAGNFD------AAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHhcccch------HHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 45555555556666666 6666666665522 21 112222111 223455666555555554443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.6 Score=41.29 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+++.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455555666666666666666655443 344556666666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.35 E-value=5.9 Score=38.94 Aligned_cols=99 Identities=11% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMP-M-EPDV--FVWGALLGGCQ 453 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 453 (569)
.-+..++.+.|+.++|.+.+.++.+.............|+.++...+.+.++..++.+.. + -|.. .+|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 446667778999999999999998655322344577889999999999999999998872 2 2333 35555443333
Q ss_pred hcCC---------------HHHHHHHHHHHhhcCCCCh
Q 038890 454 MHGN---------------VELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 454 ~~~~---------------~~~a~~~~~~~~~~~p~~~ 476 (569)
..++ -..|.+.+.++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3332 1245677888888776544
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.29 E-value=8.4 Score=37.35 Aligned_cols=50 Identities=6% Similarity=-0.056 Sum_probs=33.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
...|++.++.-.-.-+.+ +.|+..+|..+.-+.....++++|..++..+.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 345677666554444444 66777777777777777777777777777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.66 Score=42.22 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++..++..+...|+++.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666666666666666666666666643
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.1 Score=39.94 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=95.4
Q ss_pred CCCCCCCCHHHHHHHHHhhcC-----hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCC----ChhHHHHHhhc
Q 038890 20 SPPNKESTKLILRNAIDECKN-----MRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSG----SLSYATNVFSH 90 (569)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g----~~~~A~~~~~~ 90 (569)
-.+........++.++...+. +.+...+++.+.+.|...+. .++....-........ ....|.++|+.
T Consensus 52 fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~---y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~ 128 (297)
T PF13170_consen 52 FSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSE---YLYLAALIILEEEEKEDYDEIIQRAKEIYKE 128 (297)
T ss_pred cccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccC---hHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 344555667788888887776 45567899999999998888 5554433333331102 23578889998
Q ss_pred CCC-------CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHc-cCC--cHHHHHH
Q 038890 91 IKR-------SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTK-RLD--GLVGASV 159 (569)
Q Consensus 91 ~~~-------~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~-~~~--~~~a~~~ 159 (569)
|++ ++...+..++.. ...+ -+.-.+.+..+|+.+.+.|...+.. -+.+-+-++.. ..+ ...+..+
T Consensus 129 mKk~H~fLTs~~D~~~a~lLA~--~~~~--~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 129 MKKKHPFLTSPEDYPFAALLAM--TSED--VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHhCccccCccchhHHHHHhc--cccc--HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 884 233444444432 2222 2233457888899998888776443 33333333332 222 3467788
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 038890 160 YGQVVKFGVCDDVFVQNSVISL 181 (569)
Q Consensus 160 ~~~~~~~g~~~~~~~~~~l~~~ 181 (569)
++.+.+.|+++....|..+.-.
T Consensus 205 ~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHcCCccccccccHHHHH
Confidence 9999999988777777654433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.19 E-value=13 Score=39.13 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=72.1
Q ss_pred CChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHH
Q 038890 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGAS 158 (569)
Q Consensus 79 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 158 (569)
|++++|...|-+-...-.. ..+|.-|....... .--..++.+.+.|+ .+...-..|+.+|.+.++.+.-.+
T Consensus 382 gdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~Ik------nLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 382 GDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIK------NLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred CCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHH------HHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHH
Confidence 7777777666554321111 12444444444444 55666667766664 355555666777777777766555
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038890 159 VYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK 230 (569)
Q Consensus 159 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (569)
..+..- .|.. ..-....+..+.+.+-.++|..+-.+... .... +--.+-..+++++|++.+..++
T Consensus 453 fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 453 FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 544332 2211 11233455666666666666666544433 1111 1222334667777777777776
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.92 E-value=6.6 Score=35.12 Aligned_cols=227 Identities=15% Similarity=0.184 Sum_probs=125.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCC--CccHHHHHHHHHHHHccCCHHHHHHHHHHHHH----h-CCCCcch
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMV--KPDKITIASVLSACAYLGAIDHGKWVHGYLRR----S-GLDCDVV 309 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~ 309 (569)
...++..+.+.|++++....|.+++..- ...+ .-+..+.+.++...+.+.+.+....+|+.-.+ . +-..--.
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYI-kSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYI-KSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445667777777777777777764210 0001 12344566666666666666555555543222 1 1122234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCC---------------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCC
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPKK---------------DTLAWTAMISVFALNGYGKEAFDTFREMEAEG-VRPN 373 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 373 (569)
+...|...|...|.+.+..+++.++... -...|..-|..|....+-.+-..+|++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 5567888888888888888888776531 13467777788888888888888888766422 2344
Q ss_pred HHHHHHHHHHH-----HccCCHHHHHHHHHHhHHhcCC--CCCHh---HHHHHHHHHHHcCC----HHHHHHHHHhCCCC
Q 038890 374 HVTFVGLLSAC-----AHSGLVEKGRWCFVMMRHVYLV--EPHVY---HYACMIDILSRAGL----FSEAERLIRSMPME 439 (569)
Q Consensus 374 ~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 439 (569)
+.. ..+|+-| .+.|.+++|..-|-+.-+.+.- .|... -|..|...+.+.|- ..+| +..+..
T Consensus 227 PlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA----KPyKNd 301 (440)
T KOG1464|consen 227 PLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA----KPYKND 301 (440)
T ss_pred hHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc----CCCCCC
Confidence 333 3344444 4568888886544444323321 23222 24455555555541 1111 001234
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 440 PDVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
|.......++.+|. .++..+.++++..-.+
T Consensus 302 PEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQ-NNDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHHHHh-cccHHHHHHHHHhhhc
Confidence 55566777887774 4466666666555444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.76 E-value=2 Score=33.89 Aligned_cols=91 Identities=9% Similarity=0.020 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhh-cCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCc
Q 038890 439 EPDVFVWGALLGGCQMHG---NVELGEKVAQYLID-LDPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 513 (569)
.++..+-..+..++.+.. +..+.+.+++.+.+ -.|. .......|+-++.+.|+|+.+.++.+.+.+.. |
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e--~---- 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE--P---- 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC--C----
Confidence 344444455555555443 34566667777665 2233 23344456666777777777777777765522 2
Q ss_pred eeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcc
Q 038890 514 CSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFG 556 (569)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (569)
+..++.++-+.+.+.|...|++
T Consensus 103 ---------------------~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 103 ---------------------NNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ---------------------CcHHHHHHHHHHHHHHhhccee
Confidence 2335555556666777777654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.58 E-value=6.7 Score=34.38 Aligned_cols=90 Identities=9% Similarity=-0.055 Sum_probs=49.5
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHhhcCCCChhH-------
Q 038890 415 CMIDILSRA-GLFSEAERLIRSM-----PMEPDVFVWGALLG---GCQMHGNVELGEKVAQYLIDLDPLNHAF------- 478 (569)
Q Consensus 415 ~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~~------- 478 (569)
.+...|-.. .++++|+..|+.. +.+.+...-..++. --...+++.+|+++|++......+|+..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 445555443 5677777777766 22333333333333 3467889999999999998765544322
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..-+-++.-.++.-.+...+++..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 22222233333454455555555444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.94 Score=36.47 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=35.0
Q ss_pred HcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 422 RAGLFSEAERLIRSM-PMEP---DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
..++++++..+++.+ -..| ...++... .+...|++++|.++|+.+.+..+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 456666666666666 2233 22333222 23456666666666666666555544444444444444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=36.61 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=43.6
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 421 SRAGLFSEAERLIRSM-PMEPDVFVWGAL-LGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
.+.++.+++..++..+ -..|.......+ ...+...|++.+|.++|+.+.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4667777777777777 334433322211 2234577788888888888777777666555555555555554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.39 Score=29.75 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=23.5
Q ss_pred cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHH
Q 038890 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNS 177 (569)
Q Consensus 139 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 177 (569)
++..+..++...|++++|.++|+++++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 4555666677777777777777777776533 4444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.48 Score=43.51 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=69.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PME-PDVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~ 457 (569)
-..-|.+.|.+++|+..|....... +-+++++..-..+|.+..++..|+.-.... .+. .-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3556888999999999998877433 338888888889999999888887766655 211 112345555555556778
Q ss_pred HHHHHHHHHHHhhcCCCChhH
Q 038890 458 VELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~ 478 (569)
..+|.+-++.+++++|.+...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 888888888888899986543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.92 E-value=19 Score=37.98 Aligned_cols=219 Identities=11% Similarity=0.005 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHhhcChHHH----HHHHHHHHhcC----------CCCCCchhHHHHHHHHHhhcCCCCChhHHHHHh
Q 038890 23 NKESTKLILRNAIDECKNMREL----KEIHTQIIKSP----------CLQTNDHHSLITRLLFFCALSVSGSLSYATNVF 88 (569)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~a----~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 88 (569)
..+...+....++..++++--- ..+.+.+..-+ ..... .+.....-+....+. ..++-|..+.
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L-~ek~le~kL~iL~kK--~ly~~Ai~LA 357 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHEL-IEKDLETKLDILFKK--NLYKVAINLA 357 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeee-eeccHHHHHHHHHHh--hhHHHHHHHH
Confidence 3556667778888888764332 23333333333 00000 002233344455555 7788888877
Q ss_pred hcCCCCCc---ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038890 89 SHIKRSDL---YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK 165 (569)
Q Consensus 89 ~~~~~~~~---~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 165 (569)
+.-..+.. ........-+.+.|+++ .|...|-+-+.. +.|. .++.-+........--.+++.+.+
T Consensus 358 k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~------~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~ 425 (933)
T KOG2114|consen 358 KSQHLDEDTLAEIHRKYGDYLYGKGDFD------EATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHK 425 (933)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhcCCHH------HHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHH
Confidence 76543322 12222334456678888 998888877653 3333 345555555555556677888888
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 038890 166 FGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRD-VVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGF 244 (569)
Q Consensus 166 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 244 (569)
.|+. +...-..|+.+|.+.++.+.-.++.+....-. ..-....+..+.+.+-.++|..+=..... +.. .+.-.+
T Consensus 426 ~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~---vl~ill 500 (933)
T KOG2114|consen 426 KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEW---VLDILL 500 (933)
T ss_pred cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHH---HHHHHH
Confidence 8876 55555679999999999999888877765311 11233455555566666666555444433 222 233344
Q ss_pred HhCCChHHHHHHHHHch
Q 038890 245 VQGGRAREALELFQEMQ 261 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~ 261 (569)
-..+++++|++.+..+.
T Consensus 501 e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCHHHHHHHHhcCC
Confidence 56788999999998874
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.88 E-value=18 Score=37.74 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKKDT 339 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 339 (569)
.....|+..|...+++..|..++-...+++.
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3344588999999999999999988887643
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.86 E-value=5.7 Score=33.03 Aligned_cols=127 Identities=12% Similarity=-0.063 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC--CcccHHHHH---
Q 038890 29 LILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRS--DLYTYNIMI--- 103 (569)
Q Consensus 29 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li--- 103 (569)
+..+.-+...+..++|..-|..+.+.|...-|. ..........+.. |+...|...|+++-.. .+....-+.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~Ypv--LA~mr~at~~a~k--gdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPV--LARMRAATLLAQK--GDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhhc--ccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444455677777777777777776655551 1222223333444 7777777777776531 111111111
Q ss_pred --HHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 038890 104 --RANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVK 165 (569)
Q Consensus 104 --~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 165 (569)
-.+..+|.++ ....-.+.+-..+-+--...-..|.-+..+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYD------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHH------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1233445554 4444444443322111111222333444556666666666666655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.33 Score=28.46 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+|..|...|.+.|++++|+++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777778888888888888887543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.34 Score=39.71 Aligned_cols=87 Identities=9% Similarity=0.066 Sum_probs=63.0
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 038890 141 PFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLD 220 (569)
Q Consensus 141 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (569)
..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|-++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 345677777888888889999998877666788899999999999888888888774333 33345666677777777
Q ss_pred HHHHHHHhcC
Q 038890 221 VALDLFRRMK 230 (569)
Q Consensus 221 ~A~~~~~~~~ 230 (569)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 7777766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=9.3 Score=34.19 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+..-|.+.|.+-.|..-++.+++.-|... ..+..+..+|.+.|-.++|...-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34557889999999999999998766644 44566778899999999998877665443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.61 E-value=20 Score=37.74 Aligned_cols=191 Identities=15% Similarity=0.186 Sum_probs=115.6
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHH-CCCCC--CcccHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCC
Q 038890 94 SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLC-TGISP--DCLTFPFLLKECT-KRLDGLVGASVYGQVVKFGVC 169 (569)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~ 169 (569)
.++..|..+|. .|+..++...+ ..+.| +..++..+...+. ...+++.|+..+.+.....-.
T Consensus 28 ~~l~~Y~kLI~---------------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~ 92 (608)
T PF10345_consen 28 EQLKQYYKLIA---------------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER 92 (608)
T ss_pred hhHHHHHHHHH---------------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46778888885 78888888884 34444 3345555666655 678999999999987665433
Q ss_pred CcH-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C--ChhH----HHHH-HHHHHhcCCHHHHHHHHHhcCC----
Q 038890 170 DDV-----FVQNSVISLFMACGFVTSARMLFDEMSN--R--DVVS----WNAM-IIGYLRSGDLDVALDLFRRMKK---- 231 (569)
Q Consensus 170 ~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~~----~~~l-~~~~~~~g~~~~A~~~~~~~~~---- 231 (569)
++. .....++..+.+.+... |...+++..+ . .... +..+ +..+...++...|.+.++.+..
T Consensus 93 ~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 93 HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 222 12335667777777665 8888777654 1 1122 2222 2223334799999999988753
Q ss_pred -CC--hhHHHHHHHHH--HhCCChHHHHHHHHHchhccc-----cCCCCccHHHHHHHHHHH--HccCCHHHHHHHHHHH
Q 038890 232 -RN--IFSWNSIITGF--VQGGRAREALELFQEMQSSSV-----EEMVKPDKITIASVLSAC--AYLGAIDHGKWVHGYL 299 (569)
Q Consensus 232 -~~--~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~-----~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~ 299 (569)
.+ ..++-.++.+. .+.+..+++.+.++.+..... .....|...++..++..+ ...|+++.+...++++
T Consensus 172 ~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 172 RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 23333444433 355667777777776632100 111345667777777665 4677777777666665
Q ss_pred H
Q 038890 300 R 300 (569)
Q Consensus 300 ~ 300 (569)
.
T Consensus 252 q 252 (608)
T PF10345_consen 252 Q 252 (608)
T ss_pred H
Confidence 4
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.59 E-value=5.7 Score=31.36 Aligned_cols=133 Identities=9% Similarity=0.053 Sum_probs=81.3
Q ss_pred HhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHH
Q 038890 319 GKCGCVERAYGVFKEMPK-KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV---TFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~ 394 (569)
.-.|..++..++..+... .+..-+|-+|.-....-+.+-..++++..-+- .|.. -...++.++...|
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n------ 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRN------ 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhc------
Confidence 445788888888877665 35556777776666666666666666655431 1221 1222333333322
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
.+.......++.+...|+-+.-.+++.+. .-++++.....+..+|.+.|+..++.+++.++-+.+
T Consensus 84 -------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 84 -------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 23344556677788888888888888887 456888888899999999999999999999888766
Q ss_pred C
Q 038890 473 P 473 (569)
Q Consensus 473 p 473 (569)
-
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.44 Score=27.30 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
+|..+...+...|++++|...|+++.+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555556666666666666666666555
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.16 E-value=3.2 Score=37.92 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=75.1
Q ss_pred hCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 038890 302 SGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDT------LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHV 375 (569)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 375 (569)
.|.+....+...++..-....+++.+...+-++..... .+-...++.+ ..-+.++++.++..=+..|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 45566666677777777777888999888877765311 1111222222 3346779999999889999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
+++.++..+.+.+++..|.++...+....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998887777443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.16 E-value=40 Score=40.30 Aligned_cols=317 Identities=8% Similarity=0.002 Sum_probs=171.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----CCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCC
Q 038890 177 SVISLFMACGFVTSARMLFDEM----SNRD-VV-SWNAMIIGYLRSGDLDVALDLFRR-MKKRNIFSWNSIITGFVQGGR 249 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 249 (569)
.+..+-.++|.+..|...++.- .+.+ .. -|-.+...|..-+++|....+... ...++. ..-+.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4555667888899999888883 2211 12 344444588888888888877773 444443 233444567899
Q ss_pred hHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcc-hhHHHHHHHHHhcCChHHHH
Q 038890 250 AREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDV-VIGTALVDMYGKCGCVERAY 328 (569)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 328 (569)
+..|...|+.+.+.+ ++...+++-++......+.+....-..+...... ++.. ..++.=+.+--+.+++|...
T Consensus 1465 ~~da~~Cye~~~q~~-----p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-----PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHHHHHHHHHhhcCC-----CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 999999999986321 3336677777777777777777666554444332 2222 22333345557778888877
Q ss_pred HHHhhCCCCChhHHHHH--HHHHHHcC--ChhHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHccCCHHHHHH
Q 038890 329 GVFKEMPKKDTLAWTAM--ISVFALNG--YGKEAFDTFREMEAEGVRP--------N-HVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 329 ~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~~~~p--------~-~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.... ..+...|... +..+.+.. +.-.-.+.++.+.+.-+.| + ...|..++....-. +.+...+
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~ 1614 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIE 1614 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7766 4444555444 22222221 2111112333332211111 0 12233333222111 1111111
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEP-----DVFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
.+...........+..-|..-+..-....+..+-+--+++. ...| -..+|....+.+...|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11111100000111122222222111111111111112221 1122 24588888888999999999999988
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 467 YLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 467 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
.+.+..++ ..+...+.-+...|+...|+.++++-.+...+
T Consensus 1695 ~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1695 NAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88887744 57888889999999999999999998766543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.06 E-value=6.9 Score=33.33 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNH--VTFVGLLSACAHSGLVEKGRWCFVMMR 401 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 401 (569)
+..+...|++.|+.+.|.+.|.++.+....|.. ..+..+++.+...+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444455555555555555555444333322 233444444555555555555444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.01 E-value=6.6 Score=33.50 Aligned_cols=100 Identities=9% Similarity=0.014 Sum_probs=68.5
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHG 456 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~ 456 (569)
+...|++++|..-|....... ++. ...|..-..++.+.+.++.|+.-..+. .+.|+. ..+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 456778888877777776543 222 245566666778888888888777665 555532 34444455688888
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
.++.|++-|+++.+.+|....+....++.
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999876655554443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.3 Score=27.55 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCc
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGF 555 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (569)
....++-++.+.|++++|.++.+.+.+. .| ....+.++-+.+.+.|+..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP-------------------------~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--EP-------------------------DNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-------------------------S-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--CC-------------------------CcHHHHHHHHHHHHHHhccCC
Confidence 3456778899999999999999999773 23 456778888888889988874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.81 E-value=4.9 Score=40.27 Aligned_cols=132 Identities=12% Similarity=0.005 Sum_probs=77.7
Q ss_pred CHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHH
Q 038890 27 TKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRAN 106 (569)
Q Consensus 27 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 106 (569)
....++..|...|-.++|+.+ .+++. .-+...++. |+++.|.++..+. .+...|..|..+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d--~rFelal~l------grl~iA~~la~e~--~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPD--QRFELALKL------GRLDIAFDLAVEA--NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChh--hhhhhhhhc------CcHHHHHHHHHhh--cchHHHHHHHHHH
Confidence 445666666666666666544 22221 233333333 7777777665443 4567777888887
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 038890 107 ACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACG 186 (569)
Q Consensus 107 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 186 (569)
...+++. .|.+.|.+..+ |..|+-.+...|+.+....+-....+.|.. |....+|...|
T Consensus 677 l~~~~l~------lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g 735 (794)
T KOG0276|consen 677 LSAGELP------LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSG 735 (794)
T ss_pred hhcccch------hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcC
Confidence 8888877 77777776654 445666666667666555555555555522 22223455667
Q ss_pred CHHHHHHHHhhc
Q 038890 187 FVTSARMLFDEM 198 (569)
Q Consensus 187 ~~~~A~~~~~~~ 198 (569)
+++++.+++.+-
T Consensus 736 ~~~~C~~lLi~t 747 (794)
T KOG0276|consen 736 DYEECLELLIST 747 (794)
T ss_pred CHHHHHHHHHhc
Confidence 777776665543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.71 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.++..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.54 E-value=19 Score=35.61 Aligned_cols=159 Identities=12% Similarity=0.102 Sum_probs=88.2
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 038890 136 DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIG 212 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 212 (569)
|.....+++..+..+..+.-...+..+|+..| -+...+-.++.+|... ..+.-..+++++.+ .|++.-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45556666777777777777777777777765 2455566677777666 44555666665544 333333344444
Q ss_pred HHhcCCHHHHHHHHHhcCC------CCh---hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHH
Q 038890 213 YLRSGDLDVALDLFRRMKK------RNI---FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSAC 283 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~ 283 (569)
|-+ ++.+.+...|.++.. .+. ..|..+... -..+.+..+.+...+.. ..|..--...+.-+-.-|
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt---~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQT---KLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHH---hhccchHHHHHHHHHHHh
Confidence 433 666666666655431 111 134443331 13445555555555543 333334445555555666
Q ss_pred HccCCHHHHHHHHHHHHHhC
Q 038890 284 AYLGAIDHGKWVHGYLRRSG 303 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~ 303 (569)
....++.+|.+++..+.+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 67777777777777666544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=15 Score=33.99 Aligned_cols=218 Identities=9% Similarity=-0.045 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFL 143 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 143 (569)
.+....+..+... |..+....+...+..+|...-...+.++..-|+.... .++++..+..+... .|+...-...
T Consensus 38 ~vR~~A~~aL~~~--~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 38 LKRISSIRVLQLR--GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred HHHHHHHHHHHhc--CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 5566666666666 5444333333333445665556666666666653200 01566666666432 2555555455
Q ss_pred HHHHHccCCc-----HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-
Q 038890 144 LKECTKRLDG-----LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG- 217 (569)
Q Consensus 144 l~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g- 217 (569)
+.++...+.. ..+...+.... ..++..+--..+.++++.|+.+....+..-+..+|...-...+.++.+.+
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 5555444321 12222222222 22344555556666666666443333333333355555444555555432
Q ss_pred CHHHHHHHH-HhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 218 DLDVALDLF-RRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 218 ~~~~A~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
+...+...+ ..+..++..+-...+.++.+.|+. .|+..+-... .. ++ .....+.++...|+. ++...+
T Consensus 189 ~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L----~~---~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 189 DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKEL----KK---GT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHH----cC---Cc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 122333333 333345555666666666666663 3444444443 21 11 123455555555554 455555
Q ss_pred HHHHH
Q 038890 297 GYLRR 301 (569)
Q Consensus 297 ~~~~~ 301 (569)
..+.+
T Consensus 258 ~~l~~ 262 (280)
T PRK09687 258 DTLLY 262 (280)
T ss_pred HHHHh
Confidence 55544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.98 E-value=30 Score=36.92 Aligned_cols=215 Identities=14% Similarity=-0.001 Sum_probs=109.1
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcch-------hHHHHH-HHHHhcCChHHHHHHHhhCCC--------CChhHHHHHHH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVV-------IGTALV-DMYGKCGCVERAYGVFKEMPK--------KDTLAWTAMIS 347 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 347 (569)
....++.+|..+..++...-..|+.. .++.|- ......|+++.|.++.+.... .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34556677776666655432222221 112221 122345777777777665432 24556677777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHH---HHHH--HHHHccCCH--HHHHHHHHHhHHhcCCC-----CCHhHHHH
Q 038890 348 VFALNGYGKEAFDTFREMEAEGVRPNHVTF---VGLL--SACAHSGLV--EKGRWCFVMMRHVYLVE-----PHVYHYAC 415 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll--~~~~~~~~~--~~a~~~~~~~~~~~~~~-----~~~~~~~~ 415 (569)
+..-.|+++.|..+..+..+..-.-+...+ ..+. ..+...|+. ......|......+.-. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 788889999888887766543222233222 2222 234456632 23333344333222111 11233444
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-----CCCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhHHH---H
Q 038890 416 MIDILSRAGLFSEAERLIRSM-----PMEPDV--F--VWGALLGGCQMHGNVELGEKVAQYLIDLDPLN--HAFYV---N 481 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---~ 481 (569)
+..++.+ .+.+..-.... ...|.. . .+..|+......|+.+.|...++++......+ ...|. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 44443332222 112222 2 22366777888999999999998887643221 11222 2
Q ss_pred HH--HHHHHcCChHHHHHHHHH
Q 038890 482 LC--DMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 482 l~--~~~~~~g~~~~A~~~~~~ 501 (569)
.+ ......|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 223457888888877665
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=5.2 Score=38.86 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=46.6
Q ss_pred HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 420 LSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
+...|+++.+.+.+... -+.....+..+++......|+++.|....+.|...+-.++.+....+......|-++++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44555666665555554 1222344555555666666666666666666665554444444444444444555666666
Q ss_pred HHHHHHHCC
Q 038890 498 TRNLMKERG 506 (569)
Q Consensus 498 ~~~~m~~~g 506 (569)
.|+++....
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 666654433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.87 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.95 E-value=2.6 Score=38.48 Aligned_cols=53 Identities=17% Similarity=0.037 Sum_probs=21.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIR 434 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 434 (569)
++..+...|+.+.+...++.+.... +-+...|..++.+|.+.|+...|+..|+
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3333333444444444444443222 2333444444444444444444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.52 Score=27.21 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=20.9
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 038890 160 YGQVVKFGVCDDVFVQNSVISLFMACGFVTSAR 192 (569)
Q Consensus 160 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 192 (569)
|++.++..+. +...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555533 6677777777777777777764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.65 E-value=5.9 Score=33.73 Aligned_cols=92 Identities=11% Similarity=-0.059 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCChhHHH---
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM---PMEP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD--PLNHAFYV--- 480 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~--- 480 (569)
..+..+...|.+.|+.+.|.+.|.++ ...| -...+..++......+++..+...+.++...- +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667777788888888888888877 1122 23456667777777888888888877776532 22221111
Q ss_pred -HHHHHHHHcCChHHHHHHHHHH
Q 038890 481 -NLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 481 -~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.-+-.+...|++.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1222345567888888877653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.6 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHH
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~ 500 (569)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677788888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.56 E-value=30 Score=36.42 Aligned_cols=167 Identities=9% Similarity=0.010 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHH-hhcChHHHHHHHHHHHhcCCCCCCc--hhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCC----Cc
Q 038890 24 KESTKLILRNAID-ECKNMRELKEIHTQIIKSPCLQTND--HHSLITRLLFFCALSVSGSLSYATNVFSHIKRS----DL 96 (569)
Q Consensus 24 ~~~~~~~~~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~----~~ 96 (569)
...+...++.+|. ...+++.|+..++......-.+... .......+++.|.+. +... |.+..++..+. ..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~--~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT--NPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc--CHHH-HHHHHHHHHHHHhccCc
Confidence 3446667888877 5578999999998775443222221 123344667777776 5544 88888876531 12
Q ss_pred ccHHHHHH-----HHhcCCCCCCCCChhHHHHHHHHHHHCC---CCCCcccHHHHHHHHH--ccCCcHHHHHHHHHHHHh
Q 038890 97 YTYNIMIR-----ANACKSSETNDTHSGKCLKLYKQMLCTG---ISPDCLTFPFLLKECT--KRLDGLVGASVYGQVVKF 166 (569)
Q Consensus 97 ~~~~~li~-----~~~~~~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 166 (569)
..|....+ .+...+++. .|++.++.+...- ..|-...+..++.++. +.+..+.+.+..+.+...
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~------~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYN------AALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 23333222 222235776 8999999887642 2233444555555543 456677777777777443
Q ss_pred CC---------CCcHhHHHHHHHHH--HhcCCHHHHHHHHhhcC
Q 038890 167 GV---------CDDVFVQNSVISLF--MACGFVTSARMLFDEMS 199 (569)
Q Consensus 167 g~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 199 (569)
.. .|...++..+++.+ ...|+++.+...++.+.
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 23456666666654 46688778877776654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.34 E-value=12 Score=31.36 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcCCCChh
Q 038890 158 SVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG--DLDVALDLFRRMKKRNIF 235 (569)
Q Consensus 158 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~ 235 (569)
++++.+.+.++.|+...+..+++.+.+.|++.....++.--.-+|.......+-.+.... -..-|++++.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 456666778899999999999999999999988888776544455544444443333221 2455666666664 2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRR 301 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 301 (569)
.+..++..+...|++-+|+++.+...+ . +......++.+..+.+|...-..+++-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~---~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK---V-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC---c-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677889999999999999988531 1 111224456666666666655555555544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.87 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
..++.+.|++++|.+.|+++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3334444444444444444444444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.88 E-value=34 Score=36.03 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHHHHHHhcCCCCCC-CCChhHHHHHHHHHHHCC
Q 038890 68 RLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIMIRANACKSSETN-DTHSGKCLKLYKQMLCTG 132 (569)
Q Consensus 68 ~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~-~~~~~~A~~~~~~m~~~g 132 (569)
.++..+.++ |.+++|.++..... ++....+-..+..+....+..- ...-++...-|++..+..
T Consensus 116 a~Iyy~LR~--G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRC--GDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTT--T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhc--CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 445666777 99999999984333 3445666677777766533221 111224555566666543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.82 E-value=61 Score=38.92 Aligned_cols=304 Identities=7% Similarity=-0.044 Sum_probs=157.1
Q ss_pred HHHccCCcHHHHHHHHHH----HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHhcCCHH
Q 038890 146 ECTKRLDGLVGASVYGQV----VKFGVCDDVFVQNSVISLFMACGFVTSARMLFDE-MSNRDVVSWNAMIIGYLRSGDLD 220 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 220 (569)
+-.+.+.+..|.-.++.- ++.. .....+-.+...|+.-+++|....+... ...++. ...|......|++.
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWA 1466 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHH
Confidence 444667888888888773 2211 1223444556699999999998888773 333443 23455677899999
Q ss_pred HHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHH-HHHHHHHccCCHHHHHHHH
Q 038890 221 VALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIA-SVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 221 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~ 296 (569)
.|...|+++.+ |+ ..+++.++......|.++.+.-..+... ....+....++ .-+.+--+.++++.....+
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~-----~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI-----INRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh-----hccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999986 33 5578888887778888887777555553 22233333333 3344446677777766665
Q ss_pred HHHHHhCCCCcchhHHH--HHHHHHhcCChH--HHHHHHhhCC----CC---------ChhHHHHHHHHHHHcCChhHHH
Q 038890 297 GYLRRSGLDCDVVIGTA--LVDMYGKCGCVE--RAYGVFKEMP----KK---------DTLAWTAMISVFALNGYGKEAF 359 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~----~~---------~~~~~~~li~~~~~~g~~~~A~ 359 (569)
. +. +..+|.. ++....+..+-| .-.+..+.+. .+ -...|..++..+.-..-.....
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 11 1111211 222222111110 0001111111 00 0123333333322211110000
Q ss_pred HHHHHHHHCCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHH----hHHhcCCC-CCHhHHHHHHHHHHHcCCHHH
Q 038890 360 DTFREMEAEGVRPNHV------TFVGLLSACAHSGLVEKGRWCFVM----MRHVYLVE-PHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 428 (569)
.+ .+..++.. -|..-+.--....+..+-+-.+++ ...+.+.. .-..+|....+....+|+++.
T Consensus 1615 ~l------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1615 EL------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred Hh------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 00 11222221 111111111111111111111111 11111111 224678888888888999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
|...+-.++..--+..+...+..+...|+...|..+++..++..
T Consensus 1689 A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 98876666222233455566777889999999999999998744
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.57 E-value=1.2 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
++.|+..|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 344444444444444444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.54 E-value=4 Score=30.44 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
+.-+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.+.+- ....|..+++-
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 33466677777777788899999999999999999999999999999877653 23367666643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.1 Score=26.96 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLI 469 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 469 (569)
..+++.+...|...|++++|..+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3578899999999999999999998865
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.82 E-value=5 Score=29.61 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
+.-++.+-++.+....+.|+.....+.+++|.+.+|+..|.++|+-++.+.+ .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4556777777777778889999999999999999999999999998886554 24446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.64 E-value=4 Score=34.22 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=42.0
Q ss_pred HHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 428 EAERLIRSM-PMEPDV-FVWGALLGGCQMHG-----------NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 428 ~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
+|+.-|++. .+.|+. .++..+..++...+ .+++|...|+++.+.+|.|......| ... ++
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~k 125 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL-EMA------AK 125 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HT
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHH------Hh
Confidence 344444444 566754 46666766654333 36677888888888999986444433 333 35
Q ss_pred HHHHHHHHHHCCCCC
Q 038890 495 VKKTRNLMKERGIRK 509 (569)
Q Consensus 495 A~~~~~~m~~~g~~~ 509 (569)
|-++..++.+.+...
T Consensus 126 ap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 126 APELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHSSS--
T ss_pred hHHHHHHHHHHHhhh
Confidence 777777776665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.52 E-value=18 Score=31.42 Aligned_cols=179 Identities=9% Similarity=-0.026 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh-HHHHHHH--HHHHcCChhHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTL-AWTAMIS--VFALNGYGKEAFDTFR 363 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~ 363 (569)
|-+..|..-|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.-.|++.-|.+-|.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 33334444444443332 333567777777777788888888888877665432 2222222 2333567777766555
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH-HHHHHcCCHHHHHHHHHhCCC---
Q 038890 364 EMEAEG-VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI-DILSRAGLFSEAERLIRSMPM--- 438 (569)
Q Consensus 364 ~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~--- 438 (569)
..-+.. -.|-...|..+.. ..-++.+|..-+.+--+ ..|..-|...| ..|.-.=..+.+.+-...-..
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 554432 1222223333322 23345555443332221 12333332222 222111111222111111100
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 439 ---EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 439 ---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
+.-..||--+.+-+...|+.++|..+|+-++..+.
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 01124566667777777788888877777776553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.41 E-value=0.71 Score=37.80 Aligned_cols=130 Identities=11% Similarity=0.114 Sum_probs=82.1
Q ss_pred HHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 038890 101 IMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVIS 180 (569)
Q Consensus 101 ~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 180 (569)
.++..+.+.+.+. .....++.+...+..-+....+.++..|++.++.+...++++ . .+..-...++.
T Consensus 12 ~vi~~~~~~~~~~------~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~ 78 (143)
T PF00637_consen 12 EVISAFEERNQPE------ELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALR 78 (143)
T ss_dssp CCHHHCTTTT-GG------GCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHH
T ss_pred HHHHHHHhCCCHH------HHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHH
Confidence 4566677777777 888999999987655667788899999999988888877776 1 12233456778
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 038890 181 LFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRA 250 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 250 (569)
.|.+.|.++++.-++.++...+.. +..+...++++.|.+...+. .+...|..++..+...+..
T Consensus 79 ~c~~~~l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 79 LCEKHGLYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHTTTSHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHhcchHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 888888888888776654331100 00112233333333222222 3567788888887766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.27 E-value=21 Score=31.75 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=65.8
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHh--CCCCc--HhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhc
Q 038890 141 PFLLKECTKRLDGLVGASVYGQVVKF--GVCDD--VFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRS 216 (569)
Q Consensus 141 ~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (569)
......|...|.++.|-..++..-+. ++.|+ ...|..-+.+.-..++...|.+++ ...-+.+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~-----------gk~sr~lVrl 163 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY-----------GKCSRVLVRL 163 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH-----------HHhhhHhhhh
Confidence 33334455555555555444444331 22333 123333333333334444444432 2334455555
Q ss_pred CCHHHHHHHHHhcCC--------CCh-hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC
Q 038890 217 GDLDVALDLFRRMKK--------RNI-FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG 287 (569)
Q Consensus 217 g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~ 287 (569)
..+++|-..|.+-.. ++. ..|-..|-.+....++..|...++.-.+.+ ...-.-+..+...|+.+|- .|
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip-~f~~sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP-AFLKSEDSRSLENLLTAYD-EG 241 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc-cccChHHHHHHHHHHHHhc-cC
Confidence 555555444443321 111 124445555666677777777777643211 1122334556666666553 45
Q ss_pred CHHHHHHHH
Q 038890 288 AIDHGKWVH 296 (569)
Q Consensus 288 ~~~~a~~~~ 296 (569)
+.+++..++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 555554443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.03 E-value=33 Score=33.83 Aligned_cols=350 Identities=15% Similarity=0.090 Sum_probs=177.0
Q ss_pred chhhHHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhc-ChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCC
Q 038890 2 SKKLQMVSYSLLNSPAKVSPPNKESTKLILRNAIDECK-NMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGS 80 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 80 (569)
++.+-|.|+.+.+.+. .....+-.+...++.++.... ....++.++...++..-...--+..+...|++...-. .+
T Consensus 66 AksHLekA~~i~~~ip-~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id--kD 142 (629)
T KOG2300|consen 66 AKSHLEKAWLISKSIP-SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID--KD 142 (629)
T ss_pred HHHHHHHHHHHHcccc-cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh--cc
Confidence 4667788888888772 222444455556666666555 7778888888887664222222345666777787777 89
Q ss_pred hhHHHHHhhcCCC-CCc--ccHHHHHHHHhc----CCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHH--------HH
Q 038890 81 LSYATNVFSHIKR-SDL--YTYNIMIRANAC----KSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFL--------LK 145 (569)
Q Consensus 81 ~~~A~~~~~~~~~-~~~--~~~~~li~~~~~----~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l--------l~ 145 (569)
+..|.+++.---. .+. ..|--++-.++. .-.+ +..+++++...-..|.+. +.+|..--..+ +.
T Consensus 143 ~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~ 220 (629)
T KOG2300|consen 143 FPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLS 220 (629)
T ss_pred chhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHH
Confidence 9999998654321 122 223222221111 1111 122333555555566554 45555431111 12
Q ss_pred HHHccCCcHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHH-----HHHHHHHHh
Q 038890 146 ECTKRLDGLVGASVYGQVVKF---GVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVSW-----NAMIIGYLR 215 (569)
Q Consensus 146 ~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----~~l~~~~~~ 215 (569)
-|...|+...++..++++.+. +..++ ..+.. ..+ | .--...|..+.+ -..-+| ..+..+|.+
T Consensus 221 yy~~~gq~rt~k~~lkQLQ~siqtist~~-~~h~e--~il---g--sps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~ 292 (629)
T KOG2300|consen 221 YYLLPGQVRTVKPALKQLQDSIQTISTSS-RGHDE--KIL---G--SPSPILFEWLPKEQICALVYLVTVIHSMPAGYFK 292 (629)
T ss_pred HHhcccchhhhHHHHHHHHHHHhccCCCC-CCccc--ccc---C--CCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHH
Confidence 234457777777776666543 21111 00000 000 0 000112222222 011111 112222222
Q ss_pred --cCCHHHHHHHHHhcCCCC--hhHH--------HHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc-------HHHH
Q 038890 216 --SGDLDVALDLFRRMKKRN--IFSW--------NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD-------KITI 276 (569)
Q Consensus 216 --~g~~~~A~~~~~~~~~~~--~~~~--------~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-------~~~~ 276 (569)
.+-.|+|+...++.++.+ ...+ ..++-+-.-.|++.+|++-+..|.+.. . -.|. ....
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~--r~p~~~Llr~~~~~i 369 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWC-T--RFPTPLLLRAHEAQI 369 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-H--hCCchHHHHHhHHHH
Confidence 123455555556665544 1111 222233345789999999888887432 1 1222 1112
Q ss_pred HHHH-HHHHccCCHHHHHHHHHHHHHhCCCCcchh--HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHH--------H
Q 038890 277 ASVL-SACAYLGAIDHGKWVHGYLRRSGLDCDVVI--GTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTA--------M 345 (569)
Q Consensus 277 ~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------l 345 (569)
..++ -.|...+.++.|+.-|....+.-...|... ...+.-.|.+.|+.+.-.++++.+..++..++.. .
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~ 449 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILY 449 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHH
Confidence 2223 334567788888888777766433333322 2345667888888888888888887664333221 1
Q ss_pred HHH--HHHcCChhHHHHHHHHHHH
Q 038890 346 ISV--FALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 346 i~~--~~~~g~~~~A~~~~~~m~~ 367 (569)
+.+ ....+++.+|...+.+-.+
T Consensus 450 v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 450 VYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh
Confidence 111 2346777888877777654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=45 Score=35.28 Aligned_cols=435 Identities=10% Similarity=-0.074 Sum_probs=199.3
Q ss_pred hhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC-CCc-ccHHHHHHHHhcCCCCCC
Q 038890 37 ECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR-SDL-YTYNIMIRANACKSSETN 114 (569)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~ 114 (569)
..|+...+.++-..+... +..+ .+--..+..-... ...++...++++.+. |-. ..-...+..+.+.+++.
T Consensus 45 ~~g~~~~~~~~~~~l~d~--pL~~---yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~- 116 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDY--PLYP---YLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWR- 116 (644)
T ss_pred HCCCHHHHHHHHHhccCC--CcHh---HHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHH-
Confidence 446777766666655322 1122 2222222221122 456666666666553 211 11222333344444444
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH----
Q 038890 115 DTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTS---- 190 (569)
Q Consensus 115 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---- 190 (569)
..++.+ .. .+.+...-+....+....|+.++|......+-..|.. .+..++.++..+.+.|.+..
T Consensus 117 -----~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 117 -----GLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred -----HHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHH
Confidence 444321 11 1233344455666677777766665555555444422 44556666666665554333
Q ss_pred --------------HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH--HhCCChHHHH
Q 038890 191 --------------ARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGF--VQGGRAREAL 254 (569)
Q Consensus 191 --------------A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~ 254 (569)
|..+...+..........++..+ .+...+...+.... ++...-..++.++ ....+.+.|.
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHH
Confidence 33332222111011111111111 12222222222221 1111111111111 1234456777
Q ss_pred HHHHHchhccccCCCCccHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHh
Q 038890 255 ELFQEMQSSSVEEMVKPDKI--TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFK 332 (569)
Q Consensus 255 ~~~~~m~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (569)
.++..... .....+... ....+.......+....+...+...... ..+......-+....+.++++.+...+.
T Consensus 262 ~~~~~~~~---~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 262 LMIPSLVR---AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77776542 222222221 2222322222222244454444443322 1234444555555567777777777777
Q ss_pred hCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHhHHhcCCCC
Q 038890 333 EMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG-RWCFVMMRHVYLVEP 408 (569)
Q Consensus 333 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~ 408 (569)
.|... ...-..-+..++...|+.++|...|+.+... .+|-.++.+ .+.|..-.- .......... +..
T Consensus 337 ~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~--~~~ 407 (644)
T PRK11619 337 RLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPKPDSA--LTQ 407 (644)
T ss_pred hcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCchhhh--hcc
Confidence 77542 2233444566666678888888887776321 123222221 122211000 0000000000 000
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCChhHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD---PLNHAFYVNLCDM 485 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~ 485 (569)
+ .-..-+..+...|+...|...+..+....+......+.......|..+.++.........+ -.-|..|...+..
T Consensus 408 ~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~ 485 (644)
T PRK11619 408 G--PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRR 485 (644)
T ss_pred C--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHH
Confidence 0 1122345566788888888888776223455566666666778888888887776544321 0123346666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC
Q 038890 486 YAKAGRFDDVKKTRNLMKERGIRKE 510 (569)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~~g~~~~ 510 (569)
+.+.-.++.+.-+--...+.++.|+
T Consensus 486 ~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 486 YTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 6666667776654444467788776
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.55 E-value=27 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 038890 341 AWTAMISVFALNGYG---KEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHV 403 (569)
Q Consensus 341 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 403 (569)
+...++.++...+.. ++|..+++.+...... ....+..-+..+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555554443 3344455555432111 1233334445555566677777777776643
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.23 E-value=2.2 Score=24.28 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999988653
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.5 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++..++.++.+.|++++|.++|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.04 E-value=5.9 Score=33.70 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCccc--HHHHHHHH
Q 038890 29 LILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYT--YNIMIRAN 106 (569)
Q Consensus 29 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~ 106 (569)
..++..+..+++++.|...+...+...-+... ..-+-.+|.+..... |.+++|+..++....++-.. ...-...+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l-k~l~~lRLArvq~q~--~k~D~AL~~L~t~~~~~w~~~~~elrGDil 169 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENL-KALAALRLARVQLQQ--KKADAALKTLDTIKEESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHhccccccHHHHHHHHhhhHH
Confidence 34556667789999999999988865322222 113445677777888 99999999999988664333 34444678
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHCC
Q 038890 107 ACKSSETNDTHSGKCLKLYKQMLCTG 132 (569)
Q Consensus 107 ~~~~~~~~~~~~~~A~~~~~~m~~~g 132 (569)
+..|+-. +|..-|++..+.+
T Consensus 170 l~kg~k~------~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQ------EARAAYEKALESD 189 (207)
T ss_pred HHcCchH------HHHHHHHHHHHcc
Confidence 8888888 9999999999875
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.85 E-value=3.3 Score=26.87 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
..+.-++.+.|+++.|.+..+.+.+.+|+|..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 44666789999999999999999999999876543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.67 E-value=19 Score=29.77 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=39.3
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVY-HYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMH 455 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 455 (569)
...++.+.+..++..+.-- .|... .-..-...+++.|++.+|+.+|+++ ...|....-..|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 4566777777777777632 34332 2223344466778888888888887 3344444444555554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.57 E-value=6.8 Score=28.94 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=36.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 433 IRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+-.+..-|++.+..+.+++|.+.+|+..|.++++-++..-..+...|..++
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 333466788888899999999999999999999887754433444555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.90 E-value=7.4 Score=29.10 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 433 IRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+-.+.+-|++.+..+.+.+|.+.+|+..|.++++-++..-.+....|..++
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 333467789999999999999999999999999988875544333666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.81 E-value=16 Score=29.77 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=63.5
Q ss_pred HHHHHHHHHH---HHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038890 374 HVTFVGLLSA---CAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGAL 448 (569)
Q Consensus 374 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 448 (569)
....+.|+.. -...++.+.+..+++.+.-- .|+. ..-..-...+...|++++|+.+|++. ...+....-..|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 3344444443 34588999999999988843 3443 22233445577899999999999999 333343333334
Q ss_pred HHHHHh-cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 449 LGGCQM-HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 449 ~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
...|.. .||. .|...+......|.-.++..+.+.+.
T Consensus 84 ~A~CL~al~Dp-------------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALCLNAKGDA-------------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHhcCCh-------------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 443332 3332 24444444445555566666666665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.46 E-value=2.2 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 358899999999999999999998654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.92 E-value=4.4 Score=37.50 Aligned_cols=93 Identities=18% Similarity=0.118 Sum_probs=65.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 346 ISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
..-|.+.|.+++|++.|..... +.| +.+++..-..+|.+...+..|..-........ ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 4568899999999999998776 456 88888888899999999988877666665321 122344555555555566
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 038890 425 LFSEAERLIRSM-PMEPDV 442 (569)
Q Consensus 425 ~~~~A~~~~~~~-~~~p~~ 442 (569)
...+|.+-++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666666666655 667764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.43 E-value=64 Score=34.00 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=72.0
Q ss_pred HHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCC
Q 038890 32 RNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSS 111 (569)
Q Consensus 32 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 111 (569)
+..+.+.+.+++|+.+-+.....-....+ ..+...++..+.-. |++++|-...-.|...+...|..-+.-++..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i--~kv~~~yI~HLl~~--~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVI--KKVGKTYIDHLLFE--GKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccch--HHHHHHHHHHHHhc--chHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 45667778888887776655543221112 25777788888777 999999999888888888888888888887777
Q ss_pred CCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 038890 112 ETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK 149 (569)
Q Consensus 112 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 149 (569)
.. .++.-+.......++..|..++..+..
T Consensus 439 l~---------~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LT---------DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---------hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 66 344444443223456678888877665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.17 E-value=29 Score=29.78 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=46.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 417 IDILSRAGLFSEAERLIRSMPMEPDVFVWG-----ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
...+...|++++|+.-++..--.|....+. .|.+.....|.++.|...++...+..-. +.....-++++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCc
Confidence 344556666666666666441122222222 2233455566666666666554433222 2234455666666666
Q ss_pred hHHHHHHHHHHHHCC
Q 038890 492 FDDVKKTRNLMKERG 506 (569)
Q Consensus 492 ~~~A~~~~~~m~~~g 506 (569)
-++|+.-|++....+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.07 E-value=62 Score=33.63 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=70.1
Q ss_pred cCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc----C-CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 352 NGYGKEAFDTFREMEA-------EGVRPNHVTFVGLLSACAHS----G-LVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 352 ~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..+.+.|+.+|+...+ .|. ......+..+|.+. . +.+.|..++....+ .| .|+.......+..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYE 336 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHH
Confidence 3455555555555544 331 22333344444432 2 55666666666663 32 2443333222222
Q ss_pred HHH-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 420 LSR-AGLFSEAERLIRSMPMEPDVFVWGALLGGCQ----MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 420 ~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
... ..+...|.++|......-....+..+...+. ...+...|..+++++.+.++............+.. ++++.
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~ 415 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDT 415 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccH
Confidence 222 2345677777766621112222222222221 22366777777777777663322222222223333 66666
Q ss_pred HHHHHHHHHHCCCC
Q 038890 495 VKKTRNLMKERGIR 508 (569)
Q Consensus 495 A~~~~~~m~~~g~~ 508 (569)
+.-.+..+.+.|.+
T Consensus 416 ~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 416 ALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHhhhh
Confidence 66666666665554
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.79 E-value=77 Score=34.48 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCC
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKR 93 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 93 (569)
.-|..|+-.|... |..++|+++|.....
T Consensus 505 ~~y~~Li~LY~~k--g~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATK--GMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence 4578888888888 999999999888764
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.50 E-value=3.3 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
..+...+...|+++.|...++..++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444555555555544444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.22 E-value=57 Score=32.55 Aligned_cols=176 Identities=8% Similarity=0.028 Sum_probs=92.0
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPK--KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
.|.....+++..+....++.-++.+..+|.. .+-..|..++.+|... ..+.-..+|+++.+..+. |...-..|..-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3444445566666666666666666655543 3445566666666666 445566666666654322 22222333333
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC------HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPH------VYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQ 453 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 453 (569)
|.+ ++.+.+..+|.++..+. -|. ...|.-+.... ..+.+....+..++ +...-...+.-+..-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 333 66666666666655322 121 12333333221 23455555555444 32233344455555666
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
...++.+|++++..+.+.+..+..+...++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 67777777777777777666665555555554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.18 E-value=9.4 Score=32.84 Aligned_cols=71 Identities=11% Similarity=-0.029 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHHH
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKF---GVCDDVFVQNSVISLFMACGFVTSA 191 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A 191 (569)
.|++.|-.+...+.--++.....|.. +....|.+++..++...++. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555443323222222222 22345555555555555543 1234555555566665555555554
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.99 E-value=10 Score=34.78 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..+.+-.+|.+.++++.|.++.+.+....|+++.-+.--+-.|.+.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 455666778899999999999999999999999888888999999999999999888876643
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.89 E-value=4.7 Score=35.45 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFV-WGALLGGCQMHGNVEL 460 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~ 460 (569)
|.....++.|...+.+... +.|++ ..|+.-+.++.+..+++.+..-.++. .+.||..- -..+..++.....++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 5555667777776666553 24655 44566677777777777776655555 66666553 3334445566777888
Q ss_pred HHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 461 GEKVAQYLIDLD-----PLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 461 a~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|+..+.++.++. +.-..+...|..+--+.=...+..++.+..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888775422 222344454544433333344444444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.78 E-value=6.4 Score=33.09 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC-----------hHHHHHHHHHHHH
Q 038890 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR-----------FDDVKKTRNLMKE 504 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 504 (569)
+++|+.-|++++.++|....++..++.+|...+. +++|...|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888999999999999999887653 5555556665554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=81.71 E-value=11 Score=33.28 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHhhcC--CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 444 VWGALLGGCQMHGNVEL-------GEKVAQYLIDLD--PL----NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.+..+...|...|+.+. |.+.|.++.+.+ |. .......++....+.|++++|.++|.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45555666777777544 444444444432 22 245666788889999999999999999876553
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=81.25 E-value=1.9 Score=33.59 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=32.7
Q ss_pred ceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCcccccccc
Q 038890 513 GCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIRGLSMEA 566 (569)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 566 (569)
+++|+.. +.|++++.+||.. ++..++...||.|+...+.++.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~ 43 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDV 43 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCc
Confidence 5677544 7999999999988 4446777888999888877754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.19 E-value=41 Score=30.25 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
+.+.|.+.|.+..|..-++++ ..-| ....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445566666666666666666 1111 123445556667777777777665555444445543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.06 E-value=65 Score=32.88 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHH
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREA 253 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 253 (569)
..+.++..+.+.|..++|+++- +|.. .-.....+.|+.+.|.++..+.. +..-|..|.++..+.|++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-----~D~d---~rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-----TDPD---QRFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-----CChh---hhhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhH
Confidence 3445555556666666665541 1111 11223345666666666554432 445677777777777777777
Q ss_pred HHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhh
Q 038890 254 LELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333 (569)
Q Consensus 254 ~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 333 (569)
.+.|.... -|..|+-.+...|+.+....+-....+.|. . |....+|...|+++++.+++..
T Consensus 686 ~EC~~~a~-------------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 686 SECFLRAR-------------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhc-------------chhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 77776654 234455555666666655555555555442 2 2223345566777777776654
Q ss_pred C
Q 038890 334 M 334 (569)
Q Consensus 334 ~ 334 (569)
-
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 4
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.73 E-value=12 Score=34.34 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEG---VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+-..++..-....+++.++..+-++.... ..|+. +-...++.|. .-+.++++.++..-. .+|+-||..+++.+|
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFTFCLLM 142 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcc-hhccccchhhHHHHH
Confidence 34444444445567777777776665421 11211 2222333333 335667777777766 677777878888888
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038890 418 DILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~ 436 (569)
+.+.+.+++.+|.++...|
T Consensus 143 D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHhcccHHHHHHHHHHH
Confidence 8888888777777776665
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.44 E-value=9.6 Score=34.67 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-----HCCCCCC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK-----ERGIRKE 510 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~ 510 (569)
+++.....|...|.+.+|.++.+++...+|-+...+-.|...+...|+--.|.+-++++. +.|+..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 345556678999999999999999999999999999999999999999888888777773 4466554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.11 E-value=58 Score=31.30 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=48.1
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPKK-------DTLAWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
....++..+...+.+.|.++.|...+..+... .+.....-+..+...|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556778888899999999999988887652 345555566777788999999999888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.3 bits (165), Expect = 4e-12
Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 9/196 (4%)
Query: 256 LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALV 315
+ ++ + + P + +A +L ++D + G ++ L A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 316 DMYGKCGCVERAYGV---FKEMPKK----DTLAWTAMISVFALNGYGKEAFDTFREMEAE 368
+ A+ + +K + A++ +A G KE ++
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 369 GVRPNHVTFVGLLSACAHSGLVEKGRW-CFVMMRHVYLVEPHVYHYACMIDILSRAGLFS 427
G+ P+ +++ L C M L ++ A ++ RA +
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF-TAVLLSEEDRATVLK 253
Query: 428 EAERLIRSMPMEPDVF 443
++ + + P +
Sbjct: 254 AVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 1e-08
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 12/155 (7%)
Query: 124 LYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFM 183
L SP LL+E +L V + GQ + + + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 184 ACGFVTSARMLFDEMSNR-------DVVSWNAMIIGYLRSGDLDVALDLFRRMKKR---- 232
+ A L + + +NA+++G+ R G + + +K
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 233 NIFSWNSIITGFVQGGRAREALE-LFQEMQSSSVE 266
++ S+ + + + + +E ++M ++
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 72/483 (14%), Positives = 129/483 (26%), Gaps = 158/483 (32%)
Query: 23 NKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLS 82
N S + +L + + + L+ + + + RLL S
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--------SKP 242
Query: 83 YAT------NVFS--HIKRSDLY------TYNIMIRANACKSSETNDTHSGKCLKLY--- 125
Y NV + +L T + + ++ T
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPD 301
Query: 126 --KQML--CTGISPDCL------TFPFLLKECTKRLDGLVGASV---------YGQVVKF 166
K +L P L T P L ++ S+ + V
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRL--------SIIAESIRDGLATWDNWKHV--- 350
Query: 167 GVCDDVFVQNSVISLFMACGFVTSARMLFDEMS--NRDVVSWNAMIIGYLRSGDLDVALD 224
CD + ++I + R +FD +S +
Sbjct: 351 -NCDKL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSA----------------HIPTI 390
Query: 225 LFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSS-VEEMVKPDKITIASV---- 279
L + W +I + + + ++ S VE+ K I+I S+
Sbjct: 391 LLSLI-------WFDVIK--------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 280 LSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY---------GKCGCVERAYGV 330
A+ H V Y D D +I L D Y ER +
Sbjct: 436 KVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPER-MTL 492
Query: 331 FKE-------MPKK---DTLAWTAMISVFA----LNGYGKEAFDTFREMEAEGVRPNHVT 376
F+ + +K D+ AW A S+ L Y + N
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY------------ICDNDPK 540
Query: 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA------GLFSEAE 430
+ L++A F+ +E ++ D+L A +F EA
Sbjct: 541 YERLVNAILD----------FLPK-----IEENLICSKYT-DLLRIALMAEDEAIFEEAH 584
Query: 431 RLI 433
+ +
Sbjct: 585 KQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 8e-04
Identities = 32/164 (19%), Positives = 49/164 (29%), Gaps = 49/164 (29%)
Query: 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKS-PCLQTNDHHS 64
++ YSL+ KEST I ++ + +H I+ +T D
Sbjct: 410 KLHKYSLVEKQ------PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 65 LITRLLFFCALSVSGSLSYATNVFSHI----------KRSDLYT-----YNIM---IR-- 104
LI L Y +SHI +R L+ + + IR
Sbjct: 464 LIPPYLD----------QY---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 105 --ANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKE 146
A S N LK YK I + + L+
Sbjct: 511 STAWNASGSILNTLQQ---LKFYKPY----ICDNDPKYERLVNA 547
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 7e-04
Identities = 32/263 (12%), Positives = 70/263 (26%), Gaps = 37/263 (14%)
Query: 248 GRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCD 307
G ++ + Q ++ SS P++ V AYL A V ++ S
Sbjct: 13 GSYQQCINEAQRVKPSS------PERDVERDVFLYRAYL-AQRKYGVVLDEIKPSSAPEL 65
Query: 308 VVIGTALVDMYGKCGCVERAYGVFKEM-----PKKDTLAWTAMISVFALNGYGKEAFDTF 362
+ + + +T S++ + A T
Sbjct: 66 QAVR-MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124
Query: 363 REMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVE-----PHVYHYACMI 417
+ + + + + L++ R + + +
Sbjct: 125 HQ-------GDSLECMAMTVQI----LLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 173
Query: 418 DILSRAGLFSEA----ERLIRSMPMEPDVFVWGALLGGCQMH-GNVELGEKVAQYLIDLD 472
+ + +A + + + C M G E E V Q +D D
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLN---GQAACHMAQGRWEAAEGVLQEALDKD 230
Query: 473 PLNHAFYVNLCDMYAKAGRFDDV 495
+ +NL + G+ +V
Sbjct: 231 SGHPETLINLVVLSQHLGKPPEV 253
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 569 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.76 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.55 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.53 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.51 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.5 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.32 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.3 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.27 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.0 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.98 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.86 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.82 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.81 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.74 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.7 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.7 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.69 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.58 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.56 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.47 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.19 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.13 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.07 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.03 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.74 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.35 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.34 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.11 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.0 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.74 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.72 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.49 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.39 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.94 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.65 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.8 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 91.56 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.62 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.42 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.15 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.96 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.14 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.87 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.72 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.03 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.02 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.92 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.71 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.06 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 86.02 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 84.8 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.52 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.49 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 82.08 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.98 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.62 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.39 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.12 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 81.1 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.2 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=331.51 Aligned_cols=460 Identities=9% Similarity=-0.030 Sum_probs=392.3
Q ss_pred CCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC--CCCcccHHH
Q 038890 24 KESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK--RSDLYTYNI 101 (569)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 101 (569)
+...+..++..+...|++++|..+++.+.... |+. ..+..++..|.+. |++++|..+|+.+. .++..+|+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~---~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~ 155 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP---NDAFWLAQVYCCT--GDYARAKCLLTKEDLYNRSSACRYL 155 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH---HHHHHHHHHHHHT--TCHHHHHHHHHHTCGGGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc---hHHHHHHHHHHHc--CcHHHHHHHHHHHhccccchhHHHH
Confidence 34456778888889999999999999999653 455 6778899999999 99999999999984 678999999
Q ss_pred HHHHHhcCCCCCCCCChhHHHHHHHHHHHC---------------CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 038890 102 MIRANACKSSETNDTHSGKCLKLYKQMLCT---------------GISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKF 166 (569)
Q Consensus 102 li~~~~~~~~~~~~~~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 166 (569)
++.+|.+.|+++ +|+++|+++... |.+++..+|..++.++.+.|++++|..+|+++.+.
T Consensus 156 l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 156 AAFCLVKLYDWQ------GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHTTCHH------HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH------HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999 999999953221 22335778999999999999999999999999998
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHH---HhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHH
Q 038890 167 GVCDDVFVQNSVISLFMACGFVTSARML---FDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSW 237 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 237 (569)
++. +...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++.+ ++..+|
T Consensus 230 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (597)
T 2xpi_A 230 DAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308 (597)
T ss_dssp CTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHH
T ss_pred Cch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHH
Confidence 744 556666666555433332221111 222222 2334567778889999999999999999987 788999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEID-----PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcC-----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 999999999999999999999997422 3467789999999999999999999999998764 6678899999999
Q ss_pred HHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGR 394 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 394 (569)
|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998753 467899999999999999999999999999863 347789999999999999999999
Q ss_pred HHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 395 WCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-------PMEPD--VFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.+
T Consensus 462 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 462 EYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998654 567899999999999999999999999988 44777 789999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 466 QYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 466 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+++.+.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=316.78 Aligned_cols=458 Identities=9% Similarity=-0.038 Sum_probs=386.9
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT 85 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~ 85 (569)
.+.|..+++.+.+.. |+..+...++.++..+|++++|..+|+.+... ++++ .++..++..|.++ |++++|.
T Consensus 100 ~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~~~l~~~~~~~--g~~~~A~ 170 (597)
T 2xpi_A 100 YKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSS---ACRYLAAFCLVKL--YDWQGAL 170 (597)
T ss_dssp HHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCH---HHHHHHHHHHHHT--TCHHHHH
T ss_pred chHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccch---hHHHHHHHHHHHH--hhHHHHH
Confidence 355666777665444 35577888999999999999999999988654 5566 8999999999999 9999999
Q ss_pred HHhhcCCCC-------------------CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHH
Q 038890 86 NVFSHIKRS-------------------DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLK 145 (569)
Q Consensus 86 ~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 145 (569)
++|+++... +..+|+.++.+|.+.|++. +|+++|++|.+.+ |+.. .+..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~--p~~~~~~~~l~~ 242 (597)
T 2xpi_A 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD------RAKECYKEALMVD--AKCYEAFDQLVS 242 (597)
T ss_dssp HHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhC--chhhHHHHHHHH
Confidence 999965433 3789999999999999999 9999999999854 6543 4444444
Q ss_pred HHHccCCcHHH--HHH-HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCCHH
Q 038890 146 ECTKRLDGLVG--ASV-YGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLRSGDLD 220 (569)
Q Consensus 146 ~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 220 (569)
.+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 33332222211 111 44455555555666778888999999999999999999988 78999999999999999999
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 221 VALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHG 297 (569)
Q Consensus 221 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 297 (569)
+|+.+|+++.+ .+..+++.++.+|.+.|++++|..+++++.+. .+.+..++..++..|.+.|++++|..+|+
T Consensus 323 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999863 36778999999999999999999999999732 25678899999999999999999999999
Q ss_pred HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038890 298 YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH 374 (569)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 374 (569)
++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+.
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 998865 55678999999999999999999999998753 477899999999999999999999999998763 3478
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVY---LVEPH--VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGA 447 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 447 (569)
.+|..++.+|.+.|++++|..+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 899999999999999999999999998542 45677 789999999999999999999999998 3334 7899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
+..+|...|++++|.+.++++.+.+|.++.++..++.+|.
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-27 Score=229.13 Aligned_cols=371 Identities=13% Similarity=0.061 Sum_probs=314.0
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 038890 103 IRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISL 181 (569)
Q Consensus 103 i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 181 (569)
...+.+.|+++ +|++.++.+.+. .|+.. .+..+...+...|+++.|...++..++..+ .+...+..+..+
T Consensus 6 a~~~~~~g~~~------~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~ 76 (388)
T 1w3b_A 6 AHREYQAGDFE------AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHTCHH------HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHCCCHH------HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHH
Confidence 34556677777 999999999874 46554 444555667888999999999999988763 477889999999
Q ss_pred HHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHH
Q 038890 182 FMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALE 255 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~ 255 (569)
|.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|..
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999998865 4 456799999999999999999999998864 43 4567788889999999999999
Q ss_pred HHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 256 LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 256 ~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
.|+++... .+.+..++..+..++...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..
T Consensus 157 ~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 157 CYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998742 23457888999999999999999999999999875 5567788899999999999999999998764
Q ss_pred C---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 336 K---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 336 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
. .+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+.. +.+..+
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 307 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHH
Confidence 3 367888999999999999999999999998853 2246788889999999999999999999998654 667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+..+...+.+.|++++|...++++ ...| +..++..+..++.+.|++++|...++++.+..|.++.++..++..+.+.|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999999988 5555 57789999999999999999999999999999999999999999888776
Q ss_pred C
Q 038890 491 R 491 (569)
Q Consensus 491 ~ 491 (569)
+
T Consensus 388 ~ 388 (388)
T 1w3b_A 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=225.71 Aligned_cols=353 Identities=13% Similarity=0.049 Sum_probs=309.1
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCH
Q 038890 143 LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDL 219 (569)
Q Consensus 143 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 219 (569)
+...+.+.|++++|...+..+.+..+. +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345567889999999999999988644 567777888899999999999999988765 4667899999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 220 DVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 220 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
++|+..|+++.+ | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999863 4 45679999999999999999999999997421 334566777888899999999999999
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
+++.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9999875 55678899999999999999999999998764 356788999999999999999999999998753 224
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 451 (569)
..++..+..++...|++++|...|+.+.+.. +.+..+|..+..++.+.|++++|++.|+++ ..+.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 6788899999999999999999999998643 446788999999999999999999999998 334578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...|++++|...++++.+..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=233.23 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHhCCC
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA---------IDHGKWVHGYLRRSGLD 305 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~ 305 (569)
..++.+|.+|++.|++++|+++|++|. ..|+.||..||+.+|.+|++.+. ++.|.++|++|...|+.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~----~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEAR----RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH----HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 357778888888888888888888888 67788888888888888876554 67788888888888888
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
||..+|++||.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 8888888888888888888888888888853 688888888888888899999999999999889999999999999
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 382 SACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
.+|++.|+.++|.++|++|. ..+..|+..+|+.++..|..
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999988 67778898999888888765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=230.30 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC---------HH
Q 038890 120 KCLKLYKQMLCTGISPDCL-TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF---------VT 189 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~ 189 (569)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4566677787777766544 5888999999999999999999999999999999999999999987765 68
Q ss_pred HHHHHHhhcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 190 SARMLFDEMSN----RDVVSWNAMIIGYLRSGDLDVALDLFRRMK----KRNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 190 ~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
.|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999965 899999999999999999999999999997 3799999999999999999999999999999
Q ss_pred hccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc
Q 038890 262 SSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC 321 (569)
Q Consensus 262 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (569)
..|+.||..||+.++.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ----~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ----ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp ----HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred ----hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=215.10 Aligned_cols=396 Identities=10% Similarity=-0.069 Sum_probs=313.4
Q ss_pred ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHH
Q 038890 97 YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQN 176 (569)
Q Consensus 97 ~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 176 (569)
..|......+.+.|++. +|+..|+++.+.+ |+..+|..+..++...|+++.|...++.+++.++. +...+.
T Consensus 7 ~~~~~~g~~~~~~g~~~------~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 77 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYD------DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHTSCHH------HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred HHHHHHHHHHHHhccHH------HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHH
Confidence 34556667788888888 9999999998854 78888888999999999999999999999988743 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHH---------------------------
Q 038890 177 SVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLF--------------------------- 226 (569)
Q Consensus 177 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------- 226 (569)
.+..+|.+.|++++|...|+++.. .+......++..+........+.+.+
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 899999999999999999988754 23333333333333322222222211
Q ss_pred -----------HhcC---------CC-ChhHHHHHHHHHHh---CCChHHHHHHHHHchh-----ccc-cCC---CCccH
Q 038890 227 -----------RRMK---------KR-NIFSWNSIITGFVQ---GGRAREALELFQEMQS-----SSV-EEM---VKPDK 273 (569)
Q Consensus 227 -----------~~~~---------~~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~-~~~---~~p~~ 273 (569)
.... .| +...+......+.. .|++++|...|+++.. ... ... .+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 1111 01 13344445555554 8999999999999873 100 000 03346
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFA 350 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 350 (569)
.++..+..++...|++++|...++.+.+.... ...+..+...|...|++++|...|+.+.. .+...|..+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 67888889999999999999999999987633 88889999999999999999999998754 36678999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 038890 351 LNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAE 430 (569)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 430 (569)
..|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999988632 356788889999999999999999999998654 456788999999999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 431 RLIRSM----PMEPD----VFVWGALLGGCQM---HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 431 ~~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
..++++ +..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988 22222 4488899999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHCC
Q 038890 500 NLMKERG 506 (569)
Q Consensus 500 ~~m~~~g 506 (569)
++..+..
T Consensus 473 ~~a~~~~ 479 (514)
T 2gw1_A 473 EESADLA 479 (514)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9998754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-23 Score=208.24 Aligned_cols=433 Identities=9% Similarity=-0.067 Sum_probs=314.4
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHHHH
Q 038890 28 KLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIMIR 104 (569)
Q Consensus 28 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 104 (569)
....+..+...|++++|...|+.+++.. |++ ..+..+...|... |++++|...|+++. ..+...|..+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~---~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDP---VFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCH---HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccH---HHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 4567777888899999999999998876 355 7888888888888 99999999888766 235577888888
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHH---HHH
Q 038890 105 ANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSV---ISL 181 (569)
Q Consensus 105 ~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~ 181 (569)
++...|++. +|+..|+++...+ +++......++..+........+.+.+..+...+..|+....+.- ...
T Consensus 82 ~~~~~g~~~------~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 82 ANEGLGKFA------DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHTTCHH------HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHhhHH------HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 888888888 9999999988864 234445545554444333333333333222221111111111100 000
Q ss_pred HHhcCCHHHHHHHHhhcCC---------C-ChhHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C
Q 038890 182 FMACGFVTSARMLFDEMSN---------R-DVVSWNAMIIGYLR---SGDLDVALDLFRRMKK----------------R 232 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~ 232 (569)
.........+...+..... | +...+......+.. .|++++|+..|+++.+ |
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 0111111112222222211 1 23445555555554 8999999999988654 1
Q ss_pred -ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH
Q 038890 233 -NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311 (569)
Q Consensus 233 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (569)
+..++..+...+...|++++|...|+++... .|+...+..+..++...|++++|...++.+.+.. +.+..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 2456788889999999999999999998742 2337888889999999999999999999998765 5567788
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038890 312 TALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG 388 (569)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 388 (569)
..+...|...|++++|...|+.+.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCC
Confidence 9999999999999999999998643 366788899999999999999999999998753 335678888899999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSR---AGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 459 (569)
++++|...++.+.+...-.++ ...+..+..++.. .|++++|...++++ ...| +..++..+...+...|+++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 999999999998854421222 3388999999999 99999999999988 3334 6778899999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHH
Q 038890 460 LGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+|...++++.+..|.++..+..+
T Consensus 467 ~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 467 EAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999988877665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-23 Score=209.30 Aligned_cols=418 Identities=8% Similarity=0.015 Sum_probs=284.8
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-Cccc
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLT 139 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~ 139 (569)
..+..+...+.+. |++++|.+.|+++. ..+...|..+...+...|++. +|++.|+++.+.+ | +..+
T Consensus 26 ~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~------~A~~~~~~al~~~--p~~~~~ 95 (537)
T 3fp2_A 26 VQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLE------KVIEFTTKALEIK--PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcC--CchHHH
Confidence 4455556666666 66777776666654 235566666666666666666 7777777666632 3 3445
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHH
Q 038890 140 FPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNR------DVVSWNAMIIGY 213 (569)
Q Consensus 140 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~ 213 (569)
+..+...+...|++++|...|+ ..... |+. .+..+..+...+....|...++.+... ........+..+
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH
Confidence 5556666666677777776664 32222 111 112233444445556666666665441 111223344445
Q ss_pred HhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHhC--------CChHHHHHHHHHchhccccCCCCcc-------HHH
Q 038890 214 LRSGDLDVALDLFRRMKKRNIF---SWNSIITGFVQG--------GRAREALELFQEMQSSSVEEMVKPD-------KIT 275 (569)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~p~-------~~~ 275 (569)
....+.+.+...+......+.. ....+...+... |++++|..+|+++.+.. +.+ ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALA 245 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHH
Confidence 5566666666655555543322 233333333222 47888888888887321 122 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALN 352 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 352 (569)
+..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 6666677888899999999999988864 4477888888899999999999999987653 4677888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999988753 2245678888889999999999999999988654 45677888899999999999999999
Q ss_pred HHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 433 IRSM----P----MEPDVFVWGALLGGCQMH----------GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 433 ~~~~----~----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
|+++ + .......+......+... |++++|...++++.+..|.++.++..++.+|.+.|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9887 1 111233345556667777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCC
Q 038890 495 VKKTRNLMKERG 506 (569)
Q Consensus 495 A~~~~~~m~~~g 506 (569)
|.+.+++..+..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999987754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-22 Score=198.06 Aligned_cols=320 Identities=13% Similarity=0.095 Sum_probs=235.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGF 244 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 244 (569)
+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|+..|+++.+ .+..++..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344455555555555555555555555443 2344555555555555555555555555542 2345666666777
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCcc-H---HHHHHH------------HHHHHccCCHHHHHHHHHHHHHhCCCCcc
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPD-K---ITIASV------------LSACAYLGAIDHGKWVHGYLRRSGLDCDV 308 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 308 (569)
.+.|++++|...|+++.. ..|+ . ..+..+ ...+...|++++|...++.+.+.. +.+.
T Consensus 105 ~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHcCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 777777777777777652 1222 2 333333 445788899999999999988765 5677
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH----
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGL---- 380 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l---- 380 (569)
.++..++.+|.+.|++++|...|+++.+ .+..+|..++..+...|++++|+..|+++... .|+ ...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 8888899999999999999999988753 46788999999999999999999999999864 344 3344433
Q ss_pred --------HHHHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038890 381 --------LSACAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVW 445 (569)
Q Consensus 381 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 445 (569)
...+...|++++|...|+.+.+.. |+ ...|..+..++.+.|++++|+..++++ ...| +..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 788899999999999999998643 43 457888999999999999999999998 4445 68899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH------------HHHcC-----ChHHHHHHHHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM------------YAKAG-----RFDDVKKTRNLM 502 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 502 (569)
..+..+|...|++++|...++++.+..|.++.++..++.+ |...| +.+++.+.++++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988844 44444 556677777764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-22 Score=199.50 Aligned_cols=363 Identities=10% Similarity=-0.006 Sum_probs=281.1
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS 199 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 199 (569)
.+...+....... +.+...+..+...+.+.|+++.|..+|+.+++..+. +..++..+..+|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555555532 235567888888999999999999999999987643 78889999999999999999999999987
Q ss_pred C---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHH------------HHHHHhCCChHHHHHHHH
Q 038890 200 N---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RN-I---FSWNSI------------ITGFVQGGRAREALELFQ 258 (569)
Q Consensus 200 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l------------~~~~~~~g~~~~a~~~~~ 258 (569)
+ .+..++..+...|.+.|++++|...|+++.+ |+ . ..+..+ ...+.+.|++++|+..|+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 3567899999999999999999999999875 32 2 455544 445889999999999999
Q ss_pred HchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-- 336 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 336 (569)
++... .+.+..++..+..++...|++++|...++++.+.. +.+..++..++..|...|++++|...|+++..
T Consensus 168 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 168 KILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHH-----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHh-----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99742 24578889999999999999999999999998875 56788899999999999999999999998753
Q ss_pred -CChhHHHHH------------HHHHHHcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 337 -KDTLAWTAM------------ISVFALNGYGKEAFDTFREMEAEGVRPN-----HVTFVGLLSACAHSGLVEKGRWCFV 398 (569)
Q Consensus 337 -~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~ 398 (569)
.+...+..+ ...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 244445444 78899999999999999999884 444 3478888899999999999999999
Q ss_pred HhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHH
Q 038890 399 MMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGG------------CQMHG-----NVE 459 (569)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----~~~ 459 (569)
.+.+.. +.+...|..+..+|...|++++|...++++ ...|+ ...+..+..+ |...| +.+
T Consensus 320 ~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 988543 457899999999999999999999999998 66674 5566665533 33334 567
Q ss_pred HHHHHHHH-HhhcCCCCh----------hHHHHHHHHHHHcCChHH
Q 038890 460 LGEKVAQY-LIDLDPLNH----------AFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 460 ~a~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~ 494 (569)
++.+.+++ +.+..|++. ..+..+..+|...|+.++
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 77888886 666666532 134555556655555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-21 Score=195.80 Aligned_cols=430 Identities=11% Similarity=-0.033 Sum_probs=325.9
Q ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCC---CCCcccHHHH
Q 038890 26 STKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIK---RSDLYTYNIM 102 (569)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 102 (569)
......+..+...|++++|...|+..++..+ .++ ..+..+...|.+. |++++|.+.|+++. ..+...|..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~---~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEP---VFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCH---HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCc---HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4556788889999999999999999998743 344 7899999999999 99999999999876 3467788999
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCC--CCcHhHHHHHHH
Q 038890 103 IRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGV--CDDVFVQNSVIS 180 (569)
Q Consensus 103 i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~ 180 (569)
...+...|++. +|++.|+.+ . ..|+... ..+..+...+....|...++.++...+ .+........+.
T Consensus 100 a~~~~~~g~~~------~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 100 ASANESLGNFT------DAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp HHHHHHHTCHH------HHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred HHHHHHcCCHH------HHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 99999999999 999999743 3 2233221 223334445556788888888866421 111111233455
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHh--------cCCHHHHHHHHHhcCC--CC--------hhHHHH
Q 038890 181 LFMACGFVTSARMLFDEMSNRDVV---SWNAMIIGYLR--------SGDLDVALDLFRRMKK--RN--------IFSWNS 239 (569)
Q Consensus 181 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~ 239 (569)
.+....+.+.+...+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCY 248 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH
Confidence 566788888888777776664433 33333333322 2588999999998875 32 225677
Q ss_pred HHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Q 038890 240 IITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYG 319 (569)
Q Consensus 240 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (569)
+...+...|++++|...|+++.. ..|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 77889999999999999999984 24667888899999999999999999999999876 566788999999999
Q ss_pred hcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 320 KCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 320 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
..|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998753 356789999999999999999999999998863 33566888899999999999999999
Q ss_pred HHHhHHhcCCCC----CHhHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038890 397 FVMMRHVYLVEP----HVYHYACMIDILSRA----------GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 397 ~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 460 (569)
|+.+.+...-.+ ....+..+..++.+. |++++|...|+++ ...| +..++..+...+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 999875431111 122345556778888 9999999999998 3344 67889999999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHH
Q 038890 461 GEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 461 a~~~~~~~~~~~p~~~~~~~ 480 (569)
|.+.++++.+..|.+.....
T Consensus 481 A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999876644
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-19 Score=170.14 Aligned_cols=311 Identities=12% Similarity=0.005 Sum_probs=193.6
Q ss_pred cHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 038890 139 TFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGD 218 (569)
Q Consensus 139 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (569)
.+..+...+...|++++|...|+.+++..+. +...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 66 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------- 66 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Confidence 3444555556666666666666666665432 4555555666666666666666665554330
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc----cHHHHHHH------------HHH
Q 038890 219 LDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP----DKITIASV------------LSA 282 (569)
Q Consensus 219 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p----~~~~~~~l------------l~~ 282 (569)
...+...+..+...+...|++++|...|+++.+ ..| +...+..+ ...
T Consensus 67 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 67 -----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 011233444444444455555555555554431 112 22222222 455
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHH
Q 038890 283 CAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAF 359 (569)
Q Consensus 283 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 359 (569)
+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+ .+...+..+...+...|++++|.
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777777766654 44556666777777777777777777766543 35566777777777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHH------------HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH----hHHHHHHHHHHH
Q 038890 360 DTFREMEAEGVRPN-HVTFV------------GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV----YHYACMIDILSR 422 (569)
Q Consensus 360 ~~~~~m~~~~~~p~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 422 (569)
..|++..+. .|+ ...+. .+...+...|++++|...++.+.+.. +.+. ..+..+..++..
T Consensus 209 ~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 209 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH
Confidence 777777664 222 22222 22556777888888888888887543 2222 234557778888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 423 AGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
.|++++|...+++. ...| +..++..+...+...|++++|...++++.+..|.++.++..+..++...
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88888888888877 3334 6678888888888888888888888888888888888777777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-19 Score=169.55 Aligned_cols=295 Identities=14% Similarity=0.070 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHH
Q 038890 203 VVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASV 279 (569)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~l 279 (569)
+..+..+...+...|++++|+..|+++.+ .+...+..+...+...|++++|...|+++.+. .+.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l 77 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcchHHHHH
Confidence 44566777778888888888888887753 35678888999999999999999999998742 13467888999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCC---CcchhHHHH------------HHHHHhcCChHHHHHHHhhCCC---CChhH
Q 038890 280 LSACAYLGAIDHGKWVHGYLRRSGLD---CDVVIGTAL------------VDMYGKCGCVERAYGVFKEMPK---KDTLA 341 (569)
Q Consensus 280 l~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 341 (569)
..++...|++++|...++.+.+.. + .+...+..+ ...+...|++++|...|+++.+ .+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999999998764 3 344555444 5788999999999999998753 46788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH-------
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA------- 414 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 414 (569)
+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHH
Confidence 9999999999999999999999998863 3467888999999999999999999999998654 33344333
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 415 -----CMIDILSRAGLFSEAERLIRSM-PMEPD-V----FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 415 -----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
.+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|...++++.+..|.++.++..++
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3367799999999999999988 33343 3 23556778899999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCC
Q 038890 484 DMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+|.+.|++++|...+++..+..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998743
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=169.53 Aligned_cols=293 Identities=12% Similarity=0.017 Sum_probs=188.3
Q ss_pred cCCHHHHHH-HHhhcCC--C-----ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHH
Q 038890 185 CGFVTSARM-LFDEMSN--R-----DVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREA 253 (569)
Q Consensus 185 ~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 253 (569)
.|++++|.. .|++... + +...+..+...+.+.|++++|+..|+++.+ .+..++..+..++...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 455555555 5554433 1 233455555555555555555555555542 2334455555555555555555
Q ss_pred HHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhh
Q 038890 254 LELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKE 333 (569)
Q Consensus 254 ~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 333 (569)
...|+++.... +.+..++..+..++...|++++|...++.+.+.. +.+...+..+... ..
T Consensus 118 ~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 118 ISALRRCLELK-----PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------------
T ss_pred HHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------
Confidence 55555554211 2344555555555555555555555555555433 1111111111000 00
Q ss_pred CCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 334 MPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 334 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
... ....+..+.. +...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+..+
T Consensus 178 ~~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 253 (368)
T 1fch_A 178 GAG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLL 253 (368)
T ss_dssp ---------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hhc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHH
Confidence 000 0001112233 338899999999999998753221 47888999999999999999999999998654 456789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----------hhHH
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN-----------HAFY 479 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~ 479 (569)
|..+..++...|++++|+..|+++ ...| +..++..+...+...|++++|...++++.+..|.+ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999998 4344 67899999999999999999999999999988877 7899
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
..++.+|.+.|++++|..++++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999998764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-16 Score=159.08 Aligned_cols=364 Identities=12% Similarity=-0.006 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHH
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTK----RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMA----CGFVTSA 191 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 191 (569)
.+++.++...+.| +...+..+...+.. .++++.|..+|+...+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 4566677666643 66677777777776 799999999999999875 56677788899988 8999999
Q ss_pred HHHHhhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CCChHHHHHHHHHch
Q 038890 192 RMLFDEMSN-RDVVSWNAMIIGYLR----SGDLDVALDLFRRMKKR-NIFSWNSIITGFVQ----GGRAREALELFQEMQ 261 (569)
Q Consensus 192 ~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 261 (569)
...|++..+ .+...+..+...|.. .+++++|+..|++..+. +...+..|...|.. .+++++|.+.|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999998866 467788888888888 88999999999987754 56678888888887 889999999999987
Q ss_pred hccccCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh----cCChHHHHHHHhh
Q 038890 262 SSSVEEMVKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK----CGCVERAYGVFKE 333 (569)
Q Consensus 262 ~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 333 (569)
.. .+...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 179 ----~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 179 ----EQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp ----HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ----HC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 43 367788888888887 899999999999998875 45677778888886 7899999999998
Q ss_pred CCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHhHHh
Q 038890 334 MPK-KDTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS-----GLVEKGRWCFVMMRHV 403 (569)
Q Consensus 334 ~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~ 403 (569)
..+ .+...+..+...+.. .++.++|+.+|++..+.| +...+..+...+... +++++|...|+...+.
T Consensus 249 a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 249 SAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 765 467778888888888 899999999999998764 456667777777776 8999999999999853
Q ss_pred cCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCh
Q 038890 404 YLVEPHVYHYACMIDILSRAG---LFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.+...+..+...|...| ++++|+++|++.-...+...+..+...+.. .+++++|...++++.+.+ ++
T Consensus 326 ----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~ 399 (490)
T 2xm6_A 326 ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LS 399 (490)
T ss_dssp ----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred ----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CH
Confidence 35677888888888867 789999999988222578888899999988 899999999999999865 57
Q ss_pred hHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCC
Q 038890 477 AFYVNLCDMYAK----AGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 477 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 508 (569)
.++..|+.+|.+ .+++++|..+|++..+.+..
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 889999999999 89999999999999988743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-16 Score=161.19 Aligned_cols=365 Identities=9% Similarity=-0.021 Sum_probs=265.7
Q ss_pred CcccHHHHHHHHhc----CCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHh
Q 038890 95 DLYTYNIMIRANAC----KSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTK----RLDGLVGASVYGQVVKF 166 (569)
Q Consensus 95 ~~~~~~~li~~~~~----~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 166 (569)
+...+..+...|.. .+++. +|++.|++..+.| +...+..|...+.. .+++++|..+|+...+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~------~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLT------QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHH------HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHH------HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44555555555544 34444 7777777776653 44455555555655 67777777777777665
Q ss_pred CCCCcHhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhH
Q 038890 167 GVCDDVFVQNSVISLFMA----CGFVTSARMLFDEMSN-RDVVSWNAMIIGYLR----SGDLDVALDLFRRMKK-RNIFS 236 (569)
Q Consensus 167 g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~ 236 (569)
| +...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|+..|++..+ .+...
T Consensus 109 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a 185 (490)
T 2xm6_A 109 G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWS 185 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 5 44555566666666 6677777777776654 345566666666766 6778888888777654 45667
Q ss_pred HHHHHHHHHh----CCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcc
Q 038890 237 WNSIITGFVQ----GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDV 308 (569)
Q Consensus 237 ~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 308 (569)
+..+...|.. .+++++|...|++.. .. .+...+..+...+.. .+++++|..++++..+.+ +.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~----~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSA----TS---GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHH----HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHH----HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 7777777777 788888888888876 32 345666667776664 778888888888887764 34
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHhhCCCC-ChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHH
Q 038890 309 VIGTALVDMYGK----CGCVERAYGVFKEMPKK-DTLAWTAMISVFALN-----GYGKEAFDTFREMEAEGVRPNHVTFV 378 (569)
Q Consensus 309 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~ 378 (569)
..+..+...|.. .+++++|...|+...+. +...+..+...|... ++.++|+.+|++..+.| +...+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 556667777777 78899999999887653 667777888888877 89999999999998865 456666
Q ss_pred HHHHHHHccC---CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038890 379 GLLSACAHSG---LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEAERLIRSMPMEPDVFVWGALLGG 451 (569)
Q Consensus 379 ~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 451 (569)
.+...+...| ++++|..+|+...+. .++..+..+...|.. .+++++|..+|++.-...+...+..+...
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~ 408 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777776656 789999999998853 467788889999988 89999999999988222367788888888
Q ss_pred HHh----cCCHHHHHHHHHHHhhcCCC---ChhHHHHHHHHHHH
Q 038890 452 CQM----HGNVELGEKVAQYLIDLDPL---NHAFYVNLCDMYAK 488 (569)
Q Consensus 452 ~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 488 (569)
|.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 888 89999999999999998854 77777777766554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-18 Score=160.94 Aligned_cols=281 Identities=11% Similarity=-0.002 Sum_probs=165.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGF 244 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 244 (569)
+...+..+...+...|++++|..+|+++.+ .+...+..++..+...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 334444455555555555555555555433 1223334444444444555555554444432 1233444444444
Q ss_pred HhCC-ChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCC
Q 038890 245 VQGG-RAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGC 323 (569)
Q Consensus 245 ~~~g-~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (569)
...| ++++|...|++ +.+.. +.+...+..+...+...|+
T Consensus 101 ~~~~~~~~~A~~~~~~---------------------------------------a~~~~-~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 101 LMVGHKNEHARRYLSK---------------------------------------ATTLE-KTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHSCSCHHHHHHHHHH---------------------------------------HHTTC-TTCTHHHHHHHHHHHHHTC
T ss_pred HHhhhhHHHHHHHHHH---------------------------------------HHHhC-CccHHHHHHHHHHHHHccC
Confidence 4444 44444444444 44332 2233444444455555555
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 324 VERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 324 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
+++|...|+++.+ .+...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5555555544332 223445556666666677777777777666542 224566666777777777777777777776
Q ss_pred HHhcC-------CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 401 RHVYL-------VEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 401 ~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
.+... .+....++..+..++...|++++|...+++. ...| +...+..+...+...|++++|.+.++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 64321 1233567778888888888888888888877 3233 5667888888888888888888888888888
Q ss_pred CCCChhHHHHHHHHH-HHcCCh
Q 038890 472 DPLNHAFYVNLCDMY-AKAGRF 492 (569)
Q Consensus 472 ~p~~~~~~~~l~~~~-~~~g~~ 492 (569)
.|.++.++..++.++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 888888888888877 445553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-17 Score=159.55 Aligned_cols=265 Identities=11% Similarity=0.017 Sum_probs=226.2
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhH
Q 038890 232 RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIG 311 (569)
Q Consensus 232 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (569)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 355667778888888899999999999987422 3345566667788889999999999999998875 5677888
Q ss_pred HHHHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038890 312 TALVDMYGKCG-CVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS 387 (569)
Q Consensus 312 ~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 387 (569)
..+...+...| ++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 99999999999 99999999998764 356789999999999999999999999998853 22456777788999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcC
Q 038890 388 GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM----------EPDVFVWGALLGGCQMHG 456 (569)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~ 456 (569)
|++++|...++.+.+.. +.+...+..+...+...|++++|...++++ .. +.+..++..+...+...|
T Consensus 173 ~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999998544 566789999999999999999999999887 11 334678999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 457 NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 457 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
++++|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999987653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-17 Score=156.71 Aligned_cols=355 Identities=12% Similarity=0.068 Sum_probs=166.4
Q ss_pred HHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCC
Q 038890 31 LRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKS 110 (569)
Q Consensus 31 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 110 (569)
+-.++..+|++++|.+.++.+ +++ .++..|+.++.+. |++++|.+.|.+. +|...|..++.++...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~------~~~---~vWs~La~A~l~~--g~~~eAIdsfika--~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC------NEP---AVWSQLAKAQLQK--GMVKEAIDSYIKA--DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC------CCh---HHHHHHHHHHHHc--CCHHHHHHHHHcC--CCHHHHHHHHHHHHhCC
Confidence 445666788899999888888 234 5788999999999 9999999999664 56778888898888888
Q ss_pred CCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 038890 111 SETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTS 190 (569)
Q Consensus 111 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 190 (569)
+++ +|+..++..++. .+++.+.+.++.++.+.|+++++.++++ .|+..+|+.+...|...|.+++
T Consensus 76 ~~E------eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 76 NWE------ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred CHH------HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 888 999977777663 4667888889999999999988887774 3666789999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCC
Q 038890 191 ARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVK 270 (569)
Q Consensus 191 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 270 (569)
|...|..+ ..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ .
T Consensus 141 A~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~ 204 (449)
T 1b89_A 141 AKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI---------V 204 (449)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT---------T
T ss_pred HHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH---------H
Confidence 99999977 478899999999999999999999883 7888999999999999999995544433 2
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc--CChHHHHHHHhhCCC--------CChh
Q 038890 271 PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC--GCVERAYGVFKEMPK--------KDTL 340 (569)
Q Consensus 271 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~ 340 (569)
.++.-...++..|.+.|.++++..+++...... +-...+|+.|.-+|++- ++..+.++.|..-.. .+..
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 333345568888999999999999998887655 55667777777777754 456666666654433 2466
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...|...++++.|..+ |.+. +|+...-..+.....+..+.+--.+...-.... .| ...+-|+.++
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l 353 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVL 353 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CH--HHHHHHHHHH
Confidence 788888889999999988774 3432 334333333344444555555443333333322 23 3466677777
Q ss_pred HHcCCHHHHHHHHHhCCCCC
Q 038890 421 SRAGLFSEAERLIRSMPMEP 440 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~~~~p 440 (569)
...=++.++..+|+..+.-|
T Consensus 354 ~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 354 SPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp GGGCCHHHHHHHHHHTTCTT
T ss_pred HhccCcHHHHHHHHHcCCcH
Confidence 76777777777777774333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-16 Score=147.51 Aligned_cols=271 Identities=10% Similarity=0.015 Sum_probs=215.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHcc
Q 038890 211 IGYLRSGDLDVALDLFRRMKKRNI----FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYL 286 (569)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~ 286 (569)
+-....|++..|+..++.....+. .....+.++|...|+++.|+..++.. .+|+..++..+...+...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--------~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--------SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--------SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--------CChhHHHHHHHHHHHcCC
Confidence 344567888888888887665332 24456778899999999888755432 357788888888899999
Q ss_pred CCHHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGL-DCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
++.++|.+.++++...+. |.+...+..+..++...|++++|.+.|++ ..+...+..++..+.+.|++++|+..|+++
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999888764 44566777788999999999999999998 567888999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 038890 366 EAEGVRPNHVTF---VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP- 440 (569)
Q Consensus 366 ~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 440 (569)
.+. .|+.... ..++..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|+..|+++ ...|
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 885 3554311 223344456699999999999999764 678899999999999999999999999998 4445
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 441 DVFVWGALLGGCQMHGNVEL-GEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
+..++..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 67789999999999999875 67999999999999986543 455566666665433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-16 Score=159.15 Aligned_cols=408 Identities=10% Similarity=0.002 Sum_probs=279.3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCc-ccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKR--SDL-YTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTF 140 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 140 (569)
..+..++.. ... |+++.|..+|+++.. |+. ..|...+..+.+.|+++ +|..+|++++.. .|+...|
T Consensus 14 ~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~------~a~~~~~ral~~--~p~~~lw 82 (530)
T 2ooe_A 14 DAWSILIRE-AQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYD------KVEKLFQRCLMK--VLHIDLW 82 (530)
T ss_dssp HHHHHHHHH-HHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH------HHHHHHHHHTTT--CCCHHHH
T ss_pred HHHHHHHHH-HHh--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhc--CCChHHH
Confidence 677777774 666 889999999988875 443 35778888888888888 999999998874 3776666
Q ss_pred HHHHHHH-HccCCcHHHHH----HHHHHHHh-CCCC-cHhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCh
Q 038890 141 PFLLKEC-TKRLDGLVGAS----VYGQVVKF-GVCD-DVFVQNSVISLFMA---------CGFVTSARMLFDEMSN-RDV 203 (569)
Q Consensus 141 ~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~ 203 (569)
..++... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|..+|++..+ |+.
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 6666433 34577776655 66666553 5433 45677777766554 5778888888887765 322
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhc--cccC---CCCcc---
Q 038890 204 ---VSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSS--SVEE---MVKPD--- 272 (569)
Q Consensus 204 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~---~~~p~--- 272 (569)
..|..........|. ..+..++. .+.+++..|..++...... ++.. .++|+
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred hHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 122222211100110 11111111 1234456666666542100 0011 13444
Q ss_pred -----HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHHhCCCCcchhHHHHHHHHHh-------cCChH-------
Q 038890 273 -----KITIASVLSACAYL----GAI----DHGKWVHGYLRRSGLDCDVVIGTALVDMYGK-------CGCVE------- 325 (569)
Q Consensus 273 -----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~------- 325 (569)
...|...+...... ++. ..+..+|+++.... +.+..+|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23444444332221 232 46778888888764 6677888888888876 79987
Q ss_pred HHHHHHhhCCC---C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 326 RAYGVFKEMPK---K-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH--VTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 326 ~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
+|..+|++..+ | +...|..++..+...|++++|..+|+++.+. .|+. ..|..++..+.+.|+++.|..+|+.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999998764 3 5778999999999999999999999999984 5543 4788888888889999999999999
Q ss_pred hHHhcCCCCCHhHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 400 MRHVYLVEPHVYHYACMIDI-LSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
..+.. +.+...|...+.. +...|+.++|..+|+.. ...| +...|..++..+...|+.++|..+|+++....|.++
T Consensus 382 Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 98532 2233333332222 34689999999999988 3344 578899999999999999999999999999877655
Q ss_pred h----HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 477 A----FYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 477 ~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
. .|...+....+.|+.+.+..+.+++.+.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 7888888888999999999999988654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=159.10 Aligned_cols=217 Identities=11% Similarity=0.081 Sum_probs=76.9
Q ss_pred CChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHH
Q 038890 79 GSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGAS 158 (569)
Q Consensus 79 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 158 (569)
|++++|.++++++..| ..|..+..++.+.|++. +|++.|.+. +|..+|..++.++...|++++|..
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~------eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVK------EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHH------HHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 8899999999999655 59999999999999999 999999653 677899999999999999999999
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH
Q 038890 159 VYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWN 238 (569)
Q Consensus 159 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 238 (569)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ----------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 88877774 3457788899999999999999888775 377779999999999999999999999987 4788
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA----------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 217 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH----------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc----------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHH
Confidence 9999999999999999999886 2578888888888888888888443322 112222233445555
Q ss_pred HhcCChHHHHHHHhhC
Q 038890 319 GKCGCVERAYGVFKEM 334 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~ 334 (569)
.+.|++++|..+++..
T Consensus 218 ek~G~~eEai~lLe~a 233 (449)
T 1b89_A 218 QDRGYFEELITMLEAA 233 (449)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-15 Score=159.90 Aligned_cols=377 Identities=11% Similarity=0.089 Sum_probs=288.5
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCC-CC-----CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCc
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIK-RS-----DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDC 137 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 137 (569)
.-....++.|... |.+.+|.++++++. .+ +....+.++.+..+. +.. +..+..++.-..
T Consensus 986 eeVs~~vKaf~~a--glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~------Rv~eyI~kLd~~------ 1050 (1630)
T 1xi4_A 986 EEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT------RVMEYINRLDNY------ 1050 (1630)
T ss_pred HHhHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh------hHHHHHHHhhhc------
Confidence 5567778888888 99999999999877 22 335667777777766 445 666666655421
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcC
Q 038890 138 LTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSG 217 (569)
Q Consensus 138 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (569)
...-+...+...|.+++|..+|++.. ......+.+ +-..|++++|.++.+++. +..+|..+..++...|
T Consensus 1051 -d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1051 -DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred -cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 13346677888999999999998862 122222323 227889999999998773 4678889999999999
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHG 297 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 297 (569)
++++|+..|.+. .|...|..++.++.+.|++++|.+.|.... ... +++...+.++.+|++.++++....+.
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr----k~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR----KKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999775 567778889999999999999999999876 322 33333345888999999888644443
Q ss_pred HHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 038890 298 YLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTF 377 (569)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 377 (569)
+ .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|++.+++. .+..+|
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 2 345566777999999999999999999985 48999999999999999999999876 366889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh-
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQM- 454 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~- 454 (569)
..+-.+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.. +..|. ...|..+...+++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 999999999999999987665433 45677889999999999999999999877 65553 3456556666554
Q ss_pred -cCCHHHHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHH
Q 038890 455 -HGNVELGEKVAQYLIDLDP-----LNHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 455 -~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
.++..++.+.|..-....| .+...|..+...|.+.|+++.|...
T Consensus 1328 ~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4456666676665555544 5677899999999999999999953
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-18 Score=163.23 Aligned_cols=257 Identities=10% Similarity=-0.092 Sum_probs=172.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHH
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVD 316 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (569)
+..+...+.+.|++++|...|+++... .+.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ-----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 444444444555555555555544321 12234444444455555555555555555544443 333444455555
Q ss_pred HHHhcCChHHHHHHHhhCCCC-------------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPKK-------------DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVR-PNHVTFVGLLS 382 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~ 382 (569)
+|...|++++|...|+++.+. ....+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 555555555555555544321 1223344577788889999999999999875322 15778889999
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 460 (569)
.+...|++++|...|+.+.+.. +.+..+|..+..+|...|++++|+..|+++ ...| +..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998654 567889999999999999999999999988 4445 57889999999999999999
Q ss_pred HHHHHHHHhhcCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 461 GEKVAQYLIDLDPL------------NHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 461 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
|...++++.+..|. +..+|..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987765 367899999999999999998887664
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-15 Score=157.41 Aligned_cols=416 Identities=12% Similarity=0.056 Sum_probs=302.4
Q ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHH
Q 038890 26 STKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRA 105 (569)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 105 (569)
..-......|...|.+.+|.++++.+.-. ..+-..+..+.+.|+....+. +.....+.......-+ ..-+...
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 33456777788999999999999999944 231122337777777777775 3344444444443222 3446677
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 038890 106 NACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECT-KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMA 184 (569)
Q Consensus 106 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 184 (569)
+...|.++ +|..+|++.. .+...+..+. ..+++++|.++.++. -+..+|..+..++.+
T Consensus 1059 ai~lglyE------EAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1059 AISNELFE------EAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHhCCCHH------HHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 78888888 9999999962 1222223333 678899999988755 256788899999999
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHchh
Q 038890 185 CGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK--RNIFSWNSIITGFVQGGRAREALELFQEMQS 262 (569)
Q Consensus 185 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 262 (569)
.|++++|...|.+. .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|.+.+++++..... .
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~- 1191 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---N- 1191 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---h-
Confidence 99999999999764 6777888899999999999999999987653 33334456999999999988544332 1
Q ss_pred ccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHH
Q 038890 263 SSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAW 342 (569)
Q Consensus 263 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 342 (569)
.++...+..+...|...|++++|..+|..+ ..|..+...|.+.|+++.|.+.+++. .+..+|
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aW 1253 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTW 1253 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHH
Confidence 356667778999999999999999999885 37889999999999999999999987 566889
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH
Q 038890 343 TAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR 422 (569)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (569)
..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +.....|+-+..+|.+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHh
Confidence 9899999999998888876654 33356667788889999999999999998776322 3445567667777665
Q ss_pred c--CCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------cCCCChhHHHH
Q 038890 423 A--GLFSEAERLIRSM-PMEP------DVFVWGALLGGCQMHGNVELGEKVAQYLID------------LDPLNHAFYVN 481 (569)
Q Consensus 423 ~--g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~ 481 (569)
. ++..++.++|..- .++| +...|..++..|.+.|+++.|....-.-.. ..+.++..|..
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyk 1406 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 1406 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHH
Confidence 4 3444555555443 4433 456788888899999999988732222111 13556777777
Q ss_pred HHHHHHHcC---------------ChHHHHHHHH
Q 038890 482 LCDMYAKAG---------------RFDDVKKTRN 500 (569)
Q Consensus 482 l~~~~~~~g---------------~~~~A~~~~~ 500 (569)
.+..|...+ +++.+.++++
T Consensus 1407 ai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1407 AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 777766665 6666666665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-16 Score=158.37 Aligned_cols=414 Identities=10% Similarity=0.030 Sum_probs=283.2
Q ss_pred CCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC--CCcccH
Q 038890 22 PNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR--SDLYTY 99 (569)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 99 (569)
|.+......++.. ...|++++|+.+|+.+++.. |.++ .++..++..+.+. |+++.|..+|++... |++..|
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~---~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p~~~lw 82 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSG---RFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVLHIDLW 82 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCH---HHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCH---HHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCChHHH
Confidence 4455566677774 67899999999999999863 3344 7899999999999 999999999999874 677777
Q ss_pred HHHHHHH-hcCCCCCCCCChhHHHH----HHHHHHHC-CCCCC-cccHHHHHHHHHc---------cCCcHHHHHHHHHH
Q 038890 100 NIMIRAN-ACKSSETNDTHSGKCLK----LYKQMLCT-GISPD-CLTFPFLLKECTK---------RLDGLVGASVYGQV 163 (569)
Q Consensus 100 ~~li~~~-~~~~~~~~~~~~~~A~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 163 (569)
...+... ...|+.. .|.+ +|++.+.. |..|+ ...|...+..... .|+++.|..+|++.
T Consensus 83 ~~~~~~~~~~~~~~~------~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 83 KCYLSYVRETKGKLP------SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp HHHHHHHHHHTTTST------THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchh------hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7777533 3457776 6655 78777653 55553 3456666665544 68899999999999
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cC------
Q 038890 164 VKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRR-------MK------ 230 (569)
Q Consensus 164 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------ 230 (569)
++.........|..........|. ..+..++.. +.++++.|..++.. +.
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 883211112344333322111111 111222111 12334444443332 11
Q ss_pred CCC--------hhHHHHHHHHHHhC----CCh----HHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc-------cC
Q 038890 231 KRN--------IFSWNSIITGFVQG----GRA----REALELFQEMQSSSVEEMVKPDKITIASVLSACAY-------LG 287 (569)
Q Consensus 231 ~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~-------~~ 287 (569)
.|+ ...|...+...... ++. ..+..+|++.... .+.+...|......+.. .|
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhchhhhhcc
Confidence 111 13444444333322 232 3677788887632 24466777777777664 68
Q ss_pred CHH-------HHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch-hHHHHHHHHHHHcCChh
Q 038890 288 AID-------HGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DT-LAWTAMISVFALNGYGK 356 (569)
Q Consensus 288 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~ 356 (569)
+++ +|..++++..+.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 876 8888888887632355677888888889999999999999987653 2 32 47888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 357 EAFDTFREMEAEGVRPNHVTFVGLLSA-CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 357 ~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+|..+|++..+.. +.+...+...... +...|+.++|..+|+...+.. +.++..|..++..+.+.|+.++|..+|++
T Consensus 374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999998752 2223333332222 335899999999999998665 45688999999999999999999999998
Q ss_pred C----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 436 M----PMEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 436 ~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
. +..|+ ...|...+......|+.+.+..+++++.+..|.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 8 22332 458888888888999999999999999998874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-17 Score=157.28 Aligned_cols=253 Identities=11% Similarity=-0.025 Sum_probs=168.6
Q ss_pred hcCCHHHHHH-HHHhcCC--C-----ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHcc
Q 038890 215 RSGDLDVALD-LFRRMKK--R-----NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYL 286 (569)
Q Consensus 215 ~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~ 286 (569)
..|++++|.. .|++... + +...+..+...+.+.|++++|...|+++.+. .+.+..++..+..++...
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHC
Confidence 3456666666 6654432 1 2334556666666666666666666666521 133455555556666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
|++++|...++++.+.. +.+..++. .+...+...|++++|+..++++.
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~-------------------------------~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALM-------------------------------ALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHH-------------------------------HHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666655543 33344444 44444555555555555555554
Q ss_pred HCCCCCCHHHHH---------------HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 038890 367 AEGVRPNHVTFV---------------GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431 (569)
Q Consensus 367 ~~~~~p~~~~~~---------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (569)
..... +...+. ..+..+...|++++|...|+.+.+...-.++..++..+..++.+.|++++|+.
T Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 160 RYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp HTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 43211 111111 02333348899999999999998654221258899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 432 LIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 432 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.++++ ...| +..++..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...++++.+.
T Consensus 239 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99998 3344 67899999999999999999999999999999999999999999999999999999999999764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-17 Score=153.63 Aligned_cols=271 Identities=11% Similarity=-0.043 Sum_probs=180.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLS 281 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~ 281 (569)
.+..+...+...|++++|..+|+++.+ .+...+..+..++...|++++|...|+++... .+.+..++..+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~ 97 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAV 97 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCHHHHHHHHH
Confidence 344455555555555555555555432 23344555555555555555555555555421 1223444555555
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHH-HH-HHHHcCChhHHH
Q 038890 282 ACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAM-IS-VFALNGYGKEAF 359 (569)
Q Consensus 282 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~ 359 (569)
++...|++++|...++.+.+.. +.+...+..+.... ++......+ .. .+...|++++|+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 5555555555555555554432 11111111110000 000001111 22 256678899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038890 360 DTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM 438 (569)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 438 (569)
..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++ ..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999988753 3367788889999999999999999999998554 456788999999999999999999999988 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 439 EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------------NHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 439 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.| +..++..+...+...|++++|.+.++++.+..|. ++.++..++.++.+.|++++|..++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34 6788999999999999999999999999999988 7889999999999999999999988754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-16 Score=145.58 Aligned_cols=247 Identities=10% Similarity=0.042 Sum_probs=203.4
Q ss_pred HHHHHhCCChHHHHHHHHHchhccccCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 241 ITGFVQGGRAREALELFQEMQSSSVEEMVKPDK--ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
++-....|++..|+..++... . ..|+. .....+.++|...|+++.|...++. ..+|+..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~----~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK----P--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC----C--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc----c--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHH
Confidence 345677899999999998865 2 23443 4556778999999999999876644 2467788889999999
Q ss_pred HhcCChHHHHHHHhhCC----CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038890 319 GKCGCVERAYGVFKEMP----KK-DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 393 (569)
...|+.++|.+.++++. .| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999863 23 566778888999999999999999987 45678888999999999999999
Q ss_pred HHHHHHhHHhcCCCCCHhHH---HHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 394 RWCFVMMRHVYLVEPHVYHY---ACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
...|+.+.+.. |+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|+..++++
T Consensus 150 ~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998643 543211 22334445568999999999999 33457889999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHCC
Q 038890 469 IDLDPLNHAFYVNLCDMYAKAGRFDD-VKKTRNLMKERG 506 (569)
Q Consensus 469 ~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g 506 (569)
.+.+|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999976 578999987744
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-16 Score=155.28 Aligned_cols=354 Identities=7% Similarity=-0.045 Sum_probs=242.4
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHh-----C---CCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 038890 136 DCLTFPFLLKECTKRLDGLVGASVYGQVVKF-----G---VCDDVFVQNSVISLFMACGFVTSARMLFDEMSN------- 200 (569)
Q Consensus 136 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 200 (569)
....|+.+...+...|++++|++.|++.++. + ......+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888888999999999999999988763 1 122356788999999999999999998887643
Q ss_pred ----CChhHHHHHHHHHHh--cCCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHhCCChHHHHHHHHHchhccccCC
Q 038890 201 ----RDVVSWNAMIIGYLR--SGDLDVALDLFRRMKK--R-NIFSWNSIITG---FVQGGRAREALELFQEMQSSSVEEM 268 (569)
Q Consensus 201 ----~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~ 268 (569)
....++..+..++.. .+++++|+..|++..+ | +...+..+..+ +...++.++|++.+++..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---- 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---- 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC----
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC----
Confidence 123456666555554 4579999999998764 4 34455554444 456788889999998876321
Q ss_pred CCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhH
Q 038890 269 VKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLA 341 (569)
Q Consensus 269 ~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 341 (569)
+.+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...|++..+ .+..+
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 3455566555555443 467788999999988875 66677888999999999999999999998754 34556
Q ss_pred HHHHHHHHHHc-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 342 WTAMISVFALN-------------------GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 342 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
+..+...|... +..+.|+..+++..+.. +.+..++..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 23567788888777643 22455777888899999999999999998874
Q ss_pred hcCCCCCHh----HHHHHHH-HHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 403 VYLVEPHVY----HYACMID-ILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 403 ~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.. |+.. .+..+.. .+...|++++|+..|++. .+.|+...... ....+.+++++..+.+|.++
T Consensus 363 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CT
T ss_pred cC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCH
Confidence 32 3322 2333333 234678999999999887 66666443222 23455677888888999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
.++..|+.+|...|++++|.+.|++..+.|-.
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp THHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999886643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-17 Score=156.30 Aligned_cols=232 Identities=10% Similarity=-0.027 Sum_probs=196.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHH
Q 038890 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISV 348 (569)
Q Consensus 272 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 348 (569)
+...+..+...+.+.|++++|..+++++.+.. +.+..++..+...|...|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568888899999999999999999999876 66788999999999999999999999998764 467889999999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNH-----------VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+...|++++|+..|+++.+. .|+. ..+..+...+...|++++|...++++.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 2332 2233457788999999999999999996552222688999999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
..|...|++++|+..|+++ ...| +..+|..+..++...|++++|+..++++.+..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 3334 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCC
Q 038890 496 KKTRNLMKERG 506 (569)
Q Consensus 496 ~~~~~~m~~~g 506 (569)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=144.77 Aligned_cols=270 Identities=10% Similarity=0.032 Sum_probs=174.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038890 171 DVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMKK---RNIFSWNSIITGF 244 (569)
Q Consensus 171 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 244 (569)
+...+..+...+...|++++|..+|+++.+ .+..+|..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 334556778889999999999999999865 4667888999999999999999999998864 3567888999999
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHH--HHHhcC
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVD--MYGKCG 322 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g 322 (569)
...|++++|...++++.... +.+...+..+... .++......+.. .+...|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-----TTTTTC------------------------------------------CCTTSHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcc
Confidence 99999999999999987421 1122222222000 000001111111 133444
Q ss_pred ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 323 CVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 323 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
++++|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555554444322 234455556666666666666666666665542 22455666666777777777777777777
Q ss_pred hHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 400 MRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-------------DVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
+.+.. +.+...+..+..++...|++++|...++++ ...| +..+|..+..++...|++++|..++
T Consensus 232 a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66433 345666777777777777777777777766 2222 2556777777777778887777777
Q ss_pred HHHhh
Q 038890 466 QYLID 470 (569)
Q Consensus 466 ~~~~~ 470 (569)
+++.+
T Consensus 310 ~~~l~ 314 (327)
T 3cv0_A 310 AQNVE 314 (327)
T ss_dssp TCCSH
T ss_pred HHHHH
Confidence 66554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-15 Score=134.26 Aligned_cols=219 Identities=9% Similarity=-0.047 Sum_probs=161.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC------C----hhHHHH
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK------D----TLAWTA 344 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~ 344 (569)
.+..+...+...|++++|...++++.+.. .+..++..+..+|...|++++|...|++..+. + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555544 44455555555555555555555555554321 1 456777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
+...+...|++++|+..|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhc
Confidence 788888888888888888888774 3443 34556678899999998887532 345677888999999999
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 425 LFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 425 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
++++|...++++ .. +.+..++..+...+...|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 33 3367888999999999999999999999999999999999999999999999999999999988
Q ss_pred HHCC
Q 038890 503 KERG 506 (569)
Q Consensus 503 ~~~g 506 (569)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-15 Score=130.87 Aligned_cols=196 Identities=13% Similarity=0.028 Sum_probs=151.0
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777777788888888888888877654 356677888888888888888888888888753 22456777788
Q ss_pred HHHHcc-----------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038890 382 SACAHS-----------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALL 449 (569)
Q Consensus 382 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 449 (569)
.++... |++++|...+++..+.. +.+...+..+..++...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 99999999999998654 456788999999999999999999999988 2127888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
.++...|++++|+..++++.+.+|.++.++..++.++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=145.60 Aligned_cols=364 Identities=10% Similarity=-0.034 Sum_probs=229.1
Q ss_pred cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 038890 96 LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCT-----G--ISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFG 167 (569)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 167 (569)
...||.+...+...|+++ +|++.|++..+. + ..| ...+|..+...+...|++++|...+++.++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~------eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNE------AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 445677766777777776 777777665431 1 123 33578888889999999999999999887641
Q ss_pred -----C-C-CcHhHHHHHHHHHHhc--CCHHHHHHHHhhcCC--C-ChhHHHHHHHH---HHhcCCHHHHHHHHHhcCC-
Q 038890 168 -----V-C-DDVFVQNSVISLFMAC--GFVTSARMLFDEMSN--R-DVVSWNAMIIG---YLRSGDLDVALDLFRRMKK- 231 (569)
Q Consensus 168 -----~-~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~- 231 (569)
. . ....++.....++.+. +++++|...|++..+ | +...+..+... +...++.++|++.|++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 1 1245666565566554 468999999998865 4 34455555444 3456777888888887653
Q ss_pred --CChhHHHHHHHHHHh----CCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 038890 232 --RNIFSWNSIITGFVQ----GGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD 305 (569)
Q Consensus 232 --~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 305 (569)
.+...+..+...+.. .|++++|.+.+++.... .+.+...+..+...+...|++++|...++++.+.. |
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-----APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-----CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 345556655555544 46788999999988632 24567788889999999999999999999998875 5
Q ss_pred CcchhHHHHHHHHHhc-------------------CChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 306 CDVVIGTALVDMYGKC-------------------GCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
.+..++..+..+|... +.++.|...|+...+ .+..++..+...+...|++++|+..|+
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 5566677666665432 235667777766542 356778899999999999999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038890 364 EMEAEGVRPNHV--TFVGLLS-ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PME 439 (569)
Q Consensus 364 ~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 439 (569)
+..+....|... .+..+.. .....|++++|+..|++..+. .|+....... ...+..+++.. ...
T Consensus 359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKN 426 (472)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHC
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhC
Confidence 998864433321 2222222 245789999999999998853 4543322222 22333344433 223
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 440 -PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 440 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
.+..+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 36678999999999999999999999999999998887766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=133.59 Aligned_cols=236 Identities=9% Similarity=-0.048 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--Cc----c
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD--CD----V 308 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~ 308 (569)
..+..+...+...|++++|...|++.. ... .+...+..+..++...|++++|...++.+.+.... ++ .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAW----ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH----Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 345566666667777777777777665 322 55566666666677777777777776666653211 11 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG 388 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 388 (569)
.++..+...|...|++++|...|+++...+.. ...+...|++++|+..++++.... +.+...+..+...+...|
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 56666777777777777777777665432111 234556678888888888887742 223457777888888999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQ 466 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 466 (569)
++++|...++.+.+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999988654 456788889999999999999999999888 3334 57788899999999999999999999
Q ss_pred HHhhcC------CCChhHHHHHHH
Q 038890 467 YLIDLD------PLNHAFYVNLCD 484 (569)
Q Consensus 467 ~~~~~~------p~~~~~~~~l~~ 484 (569)
++.+.. |.+..++..+..
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHHH
Confidence 999988 777776666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=133.17 Aligned_cols=244 Identities=8% Similarity=-0.080 Sum_probs=181.2
Q ss_pred hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 246 QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
..|++++|+..|+++.+.. ....+.+..++..+..++...|++++|...++++.+.. +.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4567788888888876311 00112245667777778888888888888888887765 456777888888888888888
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 326 RAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 326 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
+|...|+++.+ .+...+..+...+...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887653 35678888888999999999999999998874 45554444455556677999999999988775
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 403 VYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.. +++...+ .++..+...++.++|...+++. ...|+ ..++..+...+...|++++|...++++.+..|.+.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 44 3444444 4677777888889999999887 33332 57888899999999999999999999999999875
Q ss_pred hHHHHHHHHHHHcCChHHHHHHH
Q 038890 477 AFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 444 66788889999988776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-14 Score=129.69 Aligned_cols=249 Identities=9% Similarity=-0.037 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLS 281 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~ 281 (569)
.+......+...|++++|+..|+++.+ | +...+..+..+|...|++++|+..+++.... ..........|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHHHHH
Confidence 344455556666666666666666542 2 3345566666666666666666666666521 0111111233555555
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHH
Q 038890 282 ACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 282 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-------------------------- 135 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-------------------------- 135 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC--------------------------
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh--------------------------
Confidence 5666666666666666655543 3334445555555555555555555555444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC--
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL---FSEAERLIRSM-- 436 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-- 436 (569)
+. .+.+...+..+...+...+++++|...|+.+.+.. +.+...+..+..++...|+ +++|...++++
T Consensus 136 -----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 136 -----RP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp -----CS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred -----hc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 32 11122333333312222335555555555555332 2234444455555555554 44444444444
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 437 --PMEPD------VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 437 --~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
...|+ ..+|..+...+...|++++|.+.++++.+.+|.++.+...+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888888999999999999999999999888877766554443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=152.94 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEA---EGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
.+|+++|.+|++.|++++|.++|.+|.+ .|+.||..||++||.+|++.|++++|.++|++|. ..|+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHHHH
Confidence 4566666666666666666666665542 3566667777777777777777777777776666 55666677777777
Q ss_pred HHHHHHcCC-HHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038890 417 IDILSRAGL-FSEAERLIRSM---PMEPDVFVWGALLGGC 452 (569)
Q Consensus 417 ~~~~~~~g~-~~~A~~~~~~~---~~~p~~~~~~~l~~~~ 452 (569)
|.++++.|+ .++|.++|++| |+.||..+|++++.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 776666665 35666666666 6666766666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=157.25 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHH
Q 038890 204 VSWNAMIIGYLRSGDLDVALDLFRRMK-------KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITI 276 (569)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~ 276 (569)
.|||++|++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|. ..|+.||..||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G~~PDvvTY 203 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK----DAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCcHHHH
Confidence 478888888888888888888886653 4899999999999999999999999999999 88889999999
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHH
Q 038890 277 ASVLSACAYLGA-IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGV 330 (569)
Q Consensus 277 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (569)
+++|.++++.|+ .+.|.+++++|.+.|+.||..+|+.++..+.+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999987 478889999999999999999999888777665444444333
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-13 Score=133.01 Aligned_cols=343 Identities=11% Similarity=0.023 Sum_probs=200.3
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCCh---hHHHHHhhcCCCCCcccHHHHHHH
Q 038890 29 LILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSL---SYATNVFSHIKRSDLYTYNIMIRA 105 (569)
Q Consensus 29 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~ 105 (569)
..++..+...|++++|...|+...+.+ ++ ..+..|..+|... |+. ++|.+.|++..+.++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~---~A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YS---EAQVGLADIQVGT--RDPAQIKQAEATYRAAADTSPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CC---TGGGTCC------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CH---HHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 357778888899999999999998875 33 3445566666666 888 899999998876677778777775
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 038890 106 NACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG---LVGASVYGQVVKFGVCDDVFVQNSVISLF 182 (569)
Q Consensus 106 ~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 182 (569)
+...+.. ..++.++|+..|++..+.| +...+..|...+...+.. ..+...+......|. ......+...|
T Consensus 79 ~~~~~~~-~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGA-TEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLY 151 (452)
T ss_dssp HHTC--C-CHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHH
T ss_pred HHhCCCC-CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 5555521 1123338999999998865 233666676666654432 345556666655553 34566677777
Q ss_pred HhcCC----HHHHHHHHhhcCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHhC----C
Q 038890 183 MACGF----VTSARMLFDEMSNRDVVSWNAMIIGYLRSG---DLDVALDLFRRMKK---RNIFSWNSIITGFVQG----G 248 (569)
Q Consensus 183 ~~~g~----~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----g 248 (569)
...+. .+.+..+++.....+...+..+...|...| +.++|+..|++..+ ++...+..|...|... +
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 77774 445555566666666667777777887788 77788888777653 2333335566666444 5
Q ss_pred ChHHHHHHHHHchhccccCCCCccHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC---
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKITIASVLSA-C--AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG--- 322 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 322 (569)
++++|...|++.. +-+...+..+... + ...+++++|...|++..+.| +...+..|...|. .|
T Consensus 232 d~~~A~~~~~~aa--------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 232 DEKTAQALLEKIA--------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp CHHHHHHHHHHHG--------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 7778888887763 2344455555554 3 45777888888888777665 4555566666665 44
Q ss_pred --ChHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHH
Q 038890 323 --CVERAYGVFKEMPKKDTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH----SGLVEK 392 (569)
Q Consensus 323 --~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 392 (569)
++++|...|++....++..+..+...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.++
T Consensus 300 ~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 300 PADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp CCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 77777777777663355566666655554 2366777777777666542 2233334444432 346666
Q ss_pred HHHHHHHhH
Q 038890 393 GRWCFVMMR 401 (569)
Q Consensus 393 a~~~~~~~~ 401 (569)
|..+|+...
T Consensus 377 A~~~~~~A~ 385 (452)
T 3e4b_A 377 AYVFSQLAK 385 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-14 Score=140.39 Aligned_cols=376 Identities=9% Similarity=-0.050 Sum_probs=229.1
Q ss_pred HHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCcHhHHHHH
Q 038890 102 MIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG---LVGASVYGQVVKFGVCDDVFVQNSV 178 (569)
Q Consensus 102 li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l 178 (569)
+...+.+.|++. +|++.|++..+.| +...+..+...+...|+. ++|..+|+...+. +...+..+
T Consensus 9 la~~~~~~g~~~------~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L 75 (452)
T 3e4b_A 9 LANEALKRGDTV------TAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHH
T ss_pred HHHHHHhCCCHH------HHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH
Confidence 344455566666 7888887777654 333444444445556666 7777777777654 33444455
Q ss_pred HHHHHhcC-----CHHHHHHHHhhcCC-CChhHHHHHHHHHHhcCCHHH---HHHHHHhcCC-CChhHHHHHHHHHHhCC
Q 038890 179 ISLFMACG-----FVTSARMLFDEMSN-RDVVSWNAMIIGYLRSGDLDV---ALDLFRRMKK-RNIFSWNSIITGFVQGG 248 (569)
Q Consensus 179 ~~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~g 248 (569)
..++...| ++++|...|++..+ .+...+..|...|...+..+. +.+.+....+ .+...+..+...|...+
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 55444444 66777777777655 344566667777766554433 3333333332 35566777777787777
Q ss_pred ChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc----
Q 038890 249 RAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG---AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC---- 321 (569)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 321 (569)
.++++........+.. . ..++..+..+...|...| +.++|...|+...+.| +++...+..|...|...
T Consensus 156 ~~~~~~~~a~~~~~~a-~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAA-L---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHH-T---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHH-H---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 5554444433322110 1 222237777777787788 8888888888888877 45555556677777655
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHH-H--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----CHHHH
Q 038890 322 GCVERAYGVFKEMPKKDTLAWTAMISV-F--ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG-----LVEKG 393 (569)
Q Consensus 322 g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a 393 (569)
+++++|...|+.....++..+..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|
T Consensus 231 ~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 231 PDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp CCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 689999999988773366777777776 3 45789999999999998876 5666667776666 45 99999
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 038890 394 RWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVA 465 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 465 (569)
..+|+... +-++..+..|...|.. ..++++|..+|++.-..-+......|...|.. ..|.++|...+
T Consensus 307 ~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 307 EAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 99998877 3466777788877766 34899999999988212234455566666653 45899999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 466 QYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 466 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+++.+.+++........+......++.++|..+.++...
T Consensus 382 ~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999998865443333333223334567778887776644
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-13 Score=121.12 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=90.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALN 352 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 352 (569)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 3333344444444444444444444332 22233333334444444444444444333221 1233344444444455
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAER 431 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 431 (569)
|++++|+..++++...+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555444222232 2344444455555555555555555554322 2234445555555555555555555
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 432 LIRSM-PME-PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 432 ~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
.++++ ... .+...+..+...+...|++++|.+.++++.+..|.++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 55554 222 233444455555555555555555555555555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-12 Score=119.33 Aligned_cols=222 Identities=7% Similarity=-0.125 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHH
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK----CGCVERAYGVFKEMPK-KDTLAWTAMISV 348 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 348 (569)
.++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+ .+...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444445555555555544442 123344444555555 5555555555554432 244555556666
Q ss_pred HHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 349 FAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 349 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+ . .+...+..+...|
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~ 156 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-L---NDGDGCTILGSLY 156 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-c---CcHHHHHHHHHHH
Confidence 666 677777777777766653 55666666666666 7777777777777764 2 2455666677777
Q ss_pred HH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH----
Q 038890 421 SR----AGLFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK---- 488 (569)
Q Consensus 421 ~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 488 (569)
.. .+++++|+..|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|.+
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 76 77777777777766111345666777777777 7788888888888777765 5667777778877
Q ss_pred cCChHHHHHHHHHHHHCCC
Q 038890 489 AGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~ 507 (569)
.+++++|.+++++..+.|.
T Consensus 235 ~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCSTTHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 7888888888887777653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-13 Score=129.23 Aligned_cols=247 Identities=8% Similarity=0.027 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCCCcchhHH
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGA-IDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
...|+.+...+.+.|++++|+..|++++... +-+...|..+..++...|+ +++|...++++.+.. +.+..+|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 3457777777888888888888888876321 3456777777788888886 888888888888775 55677888
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cC
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH-SG 388 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~ 388 (569)
.+..++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++... -+...|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 888888888888888888887753 4677888888888889999999999999888532 256778888888887 56
Q ss_pred CHHHH-----HHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC----
Q 038890 389 LVEKG-----RWCFVMMRHVYLVEPHVYHYACMIDILSRAG--LFSEAERLIRSMPMEP-DVFVWGALLGGCQMHG---- 456 (569)
Q Consensus 389 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~---- 456 (569)
..++| +..++...+.. +-+...|..+..++...| ++++|++.+.++...| +...+..++..+.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 54666 47788877544 456778888888888888 6888998888874444 5678888888888764
Q ss_pred ----C-HHHHHHHHHHH-hhcCCCChhHHHHHHHHHHHc
Q 038890 457 ----N-VELGEKVAQYL-IDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 457 ----~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 489 (569)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899999999999888766543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=116.80 Aligned_cols=203 Identities=8% Similarity=-0.052 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHH
Q 038890 273 KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVF 349 (569)
Q Consensus 273 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 349 (569)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.. .+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3444444555555555555555555554432 22333444444444444444444444433321 1233344444444
Q ss_pred HHc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHH
Q 038890 350 ALN-GYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFS 427 (569)
Q Consensus 350 ~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (569)
... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHH
Confidence 444 455555555554444212222 2334444444455555555555555444322 223444444444455555555
Q ss_pred HHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhH
Q 038890 428 EAERLIRSM-PME--PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 428 ~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
+|...++++ ... .+...+..+...+...|+.+.+..+++.+.+..|+++.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 555544444 111 233334444444444555555555555544444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=125.35 Aligned_cols=141 Identities=15% Similarity=0.007 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 334444444445555555555555544432 1233444445555555555555555555554322 2334445555555
Q ss_pred HHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 420 LSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+.+.|++++|+..++++ .. +.+..++..+...+...|++++|...++++.+..|.++.++..+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555544 11 123445555555555555555555555555555555554444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=130.91 Aligned_cols=227 Identities=9% Similarity=-0.009 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCC-hHHHHHHHhhCCC---CChhHHHHHHHH
Q 038890 273 KITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGC-VERAYGVFKEMPK---KDTLAWTAMISV 348 (569)
Q Consensus 273 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 348 (569)
...|..+..++...|++++|...++++.+.. +.+..+|..+..++...|+ +++|+..|+++.. .+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5667778888899999999999999999886 6678889999999999997 9999999998864 467899999999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH-cCCHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR-AGLFS 427 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 427 (569)
+...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+.. +.+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998532 257789999999999999999999999999654 5578899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC--------
Q 038890 428 EA-----ERLIRSM-PMEP-DVFVWGALLGGCQMHG--NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG-------- 490 (569)
Q Consensus 428 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 490 (569)
+| ++.|++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777777 4455 5678888888888888 689999999998 889999999999999999975
Q ss_pred -ChHHHHHHHHHH-HH
Q 038890 491 -RFDDVKKTRNLM-KE 504 (569)
Q Consensus 491 -~~~~A~~~~~~m-~~ 504 (569)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 359999999998 55
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.2e-13 Score=122.88 Aligned_cols=227 Identities=7% Similarity=-0.096 Sum_probs=175.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHH
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK--KD----TLAWTAMISVF 349 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~ 349 (569)
+......+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++... ++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556667777777777777776654 34455677777777788888888777776644 22 23478888889
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEA 429 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 429 (569)
...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753 2355788899999999999999999999998542 45677888888444456699999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcC---CCC-----hhHHHHHHHHHHHcCChHHHH
Q 038890 430 ERLIRSM-PMEP-DVFVWGALLGGCQMHGN---VELGEKVAQYLIDLD---PLN-----HAFYVNLCDMYAKAGRFDDVK 496 (569)
Q Consensus 430 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~ 496 (569)
+..|+++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..++..++..|.+.|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998 4445 46788888888888888 888999999998854 432 257888999999999999999
Q ss_pred HHHHHHHHCC
Q 038890 497 KTRNLMKERG 506 (569)
Q Consensus 497 ~~~~~m~~~g 506 (569)
+.+++..+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-12 Score=118.37 Aligned_cols=226 Identities=8% Similarity=-0.110 Sum_probs=174.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcc
Q 038890 233 NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDV 308 (569)
Q Consensus 233 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 308 (569)
+..++..+...+...|++++|...|++.. . +.+...+..+...+.. .+++++|...+++..+.+ +.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC----D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH----H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH
Confidence 44556667777777777777777777776 3 2344566666677777 777777777777777765 55
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038890 309 VIGTALVDMYGK----CGCVERAYGVFKEMPK-KDTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVG 379 (569)
Q Consensus 309 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 379 (569)
..+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666777777777 7888888888776654 356677788888888 899999999999988865 5666777
Q ss_pred HHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038890 380 LLSACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEAERLIRSM-PMEPDVFVWGALLG 450 (569)
Q Consensus 380 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 450 (569)
+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++|+..|++. ... +...+..+..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~ 226 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 7777777 89999999999998853 356778889999999 99999999999987 333 3677888888
Q ss_pred HHHh----cCCHHHHHHHHHHHhhcCCCCh
Q 038890 451 GCQM----HGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 451 ~~~~----~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.+.. .+++++|.+.++++.+.+|++.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8888 8999999999999999988754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-13 Score=120.72 Aligned_cols=197 Identities=11% Similarity=-0.081 Sum_probs=172.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC 384 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 384 (569)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56678888999999999999999998753 467789999999999999999999999998753 33677888899999
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
...|++++|...++.+.. .+..| +...+..+..++...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 22234 5678889999999999999999999988 3334 678899999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...++++.+..|.+...+..++..+.+.|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-13 Score=122.54 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=154.0
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344556666677777777777777776643 356677888888889999999999999988753 3367788889999
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++ .. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998654 557888999999999999999999999988 33 34678899999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 462 EKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...++++.+..|.++.++..++.+|.+.|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-13 Score=118.82 Aligned_cols=192 Identities=16% Similarity=0.027 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHH
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTA 313 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (569)
...+..+...+.+.|++++|...|++..+. -+.+...+..+..++...|++++|...++++.+.. |.+...+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE-----NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 344555555666666666666666665421 13345555555666666666666666666665553 334445555
Q ss_pred HHHHHHhc-----------CChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038890 314 LVDMYGKC-----------GCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVG 379 (569)
Q Consensus 314 l~~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 379 (569)
+..++... |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 55555555 444444444444322 133344444444445555555555555544433 34444444
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
+..++...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444555555555555555444322 23344444444444455555555444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-12 Score=116.63 Aligned_cols=200 Identities=12% Similarity=0.004 Sum_probs=173.5
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLL 381 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 381 (569)
+.+..++..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34566788899999999999999999997653 467789999999999999999999999998753 33677888899
Q ss_pred HHHHcc-CCHHHHHHHHHHhHHhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 382 SACAHS-GLVEKGRWCFVMMRHVYLVEP-HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 382 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
..+... |++++|...++.+.+ .+..| +...+..+..++...|++++|+..++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999985 32223 3678899999999999999999999988 3334 57889999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 458 VELGEKVAQYLIDLDP-LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 899999999999999999999999999987643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-13 Score=132.63 Aligned_cols=120 Identities=11% Similarity=0.016 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHH
Q 038890 204 VSWNAMIIGYLRSGDLDVALDLFRRMKK--R-N----IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKIT 275 (569)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~ 275 (569)
..+......+...|++++|...|+++.+ | + ...+..+...|...|++++|...+++........+..| ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445555666666677776666666542 2 1 23455666666666666666666666653211111111 1334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCC----C-CcchhHHHHHHHHHhcCC
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRSGL----D-CDVVIGTALVDMYGKCGC 323 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~ 323 (569)
+..+...+...|++++|...++++.+... + ....++..+...|...|+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 55555566666666666666665544210 0 012244455555555555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=111.27 Aligned_cols=166 Identities=12% Similarity=0.001 Sum_probs=143.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45678888999999999999999999988753 2256788888899999999999999999988544 45677888888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDV 495 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 495 (569)
..+...++++.|...+.+. ...| +...+..+...+...|++++|++.++++.+.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999888 3344 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCC
Q 038890 496 KKTRNLMKERG 506 (569)
Q Consensus 496 ~~~~~~m~~~g 506 (569)
.+.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999987743
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=135.55 Aligned_cols=230 Identities=10% Similarity=-0.039 Sum_probs=140.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHh----C-CCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---------ChhH
Q 038890 276 IASVLSACAYLGAIDHGKWVHGYLRRS----G-LDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---------DTLA 341 (569)
Q Consensus 276 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 341 (569)
+..+..++...|++++|...++++.+. + .+....++..+...|...|++++|...|++..+. ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444443321 0 0112233444445555555555555554443221 1234
Q ss_pred HHHHHHHHHHcCC-----------------hhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 342 WTAMISVFALNGY-----------------GKEAFDTFREMEAE----GVRP-NHVTFVGLLSACAHSGLVEKGRWCFVM 399 (569)
Q Consensus 342 ~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 399 (569)
+..+...+...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5555666666666 66666666655431 1111 124666777778888888888888887
Q ss_pred hHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038890 400 MRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PM---EP----DVFVWGALLGGCQMHGNVELGEKVAQY 467 (569)
Q Consensus 400 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 467 (569)
..+...-.++ ...+..+..+|...|++++|...+++. .. .. ...++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7643211111 236778888888889998888888776 11 11 145777888888899999999999998
Q ss_pred HhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 468 LIDLDPL------NHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 468 ~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+.+..+. ...++..++.+|.+.|++++|..++++..+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 8875422 2457888999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=128.11 Aligned_cols=262 Identities=14% Similarity=0.048 Sum_probs=165.5
Q ss_pred HHHHHHhCCChHHHHHHHHHchhccccCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHHh----CCC-Ccchh
Q 038890 240 IITGFVQGGRAREALELFQEMQSSSVEEMVKPD----KITIASVLSACAYLGAIDHGKWVHGYLRRS----GLD-CDVVI 310 (569)
Q Consensus 240 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 310 (569)
....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +.+ ....+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444555555555555555554211 111 234444555555555555555555544321 111 11334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCC--------------------hhHHHHH
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPK-----KD----TLAWTAMISVFALNGY--------------------GKEAFDT 361 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 361 (569)
+..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 45555566666666666665555432 11 2255566666666777 7777777
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHH
Q 038890 362 FREMEAE----GVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 362 ~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
+++.... +..| ....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665431 1111 1346677778888899999999998887643211111 24778888999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHH
Q 038890 433 IRSM----PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 433 ~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
+++. +..++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877 11122 457788888999999999999999999875432 245788899999999999999999
Q ss_pred HHHHHHCC
Q 038890 499 RNLMKERG 506 (569)
Q Consensus 499 ~~~m~~~g 506 (569)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99987643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-13 Score=130.88 Aligned_cols=297 Identities=11% Similarity=-0.025 Sum_probs=205.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----
Q 038890 169 CDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R-D----VVSWNAMIIGYLRSGDLDVALDLFRRMKK-----R---- 232 (569)
Q Consensus 169 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---- 232 (569)
......+......+...|++++|...|++..+ | + ..+|..+...+...|++++|...+++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555667788889999999999999998865 3 2 25688889999999999999999988642 1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHHccCC--------------------HHH
Q 038890 233 NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACAYLGA--------------------IDH 291 (569)
Q Consensus 233 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~~~~~--------------------~~~ 291 (569)
...++..+...|...|++++|...+++........+..+. ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2447888899999999999999999999843211111110 3467777788888888 777
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK--DTLAWTAMISVFALNGYGKEAFDTFREMEAEG 369 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (569)
|...+.+..+. +.....+ ...++..+...+...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 76666655432 1111110 12345555566666666666666666654321
Q ss_pred C-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC----
Q 038890 370 V-RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM---- 436 (569)
Q Consensus 370 ~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 436 (569)
. .++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|++++|...+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 236677777788888888888888776643211111 456778888889999999998888877
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCChH
Q 038890 437 PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLD------PLNHAFYVNLCDMYAKAGRFD 493 (569)
Q Consensus 437 ~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 493 (569)
...++ ..++..+...+...|++++|.+.++++.+.. +....++..++..+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 4577888888999999999999999988753 223566778888888888763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=134.52 Aligned_cols=208 Identities=9% Similarity=-0.069 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCCh-HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCV-ERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
+.+...++...... +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433322 33455666666666677777 777777666542 34667888888888899999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc--------CCHHH
Q 038890 366 EAEGVRPNHVTFVGLLSACAHS---------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA--------GLFSE 428 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 428 (569)
.+. .|+...+..+..++... |++++|...|++..+.. +.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57778888888899998 99999999999998654 55688899999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 429 AERLIRSM-PMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 429 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|+..|++. ...| +...|..+..++...|++++|.+.|+++.+.+|.++.++..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998 4455 78899999999999999999999999999999999999999999999999999999755443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-11 Score=121.08 Aligned_cols=415 Identities=9% Similarity=-0.012 Sum_probs=278.9
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHHHHhhcCCC---CCcccHHHHHHHHhcCCC---CCCCC
Q 038890 43 ELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYATNVFSHIKR---SDLYTYNIMIRANACKSS---ETNDT 116 (569)
Q Consensus 43 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~~~ 116 (569)
+....++..+... +.+. ..+..++..+.+. +.++.|..+|+.+.. .+...|...+..-.+.++ ..
T Consensus 50 d~i~~lE~~l~~n-p~d~---~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~--- 120 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDI---FLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA--- 120 (679)
T ss_dssp CHHHHHHHHHHHC-TTCH---HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHH---
T ss_pred HHHHHHHHHHHHC-cCCH---HHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHH---
Confidence 3344555555553 2344 7888888888888 888888888888763 355677777777777776 55
Q ss_pred ChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHccCCc--------HHHHHHHHHHHH-hCC-CC-cHhHHHHHHHHHH-
Q 038890 117 HSGKCLKLYKQMLCTG-ISPDCLTFPFLLKECTKRLDG--------LVGASVYGQVVK-FGV-CD-DVFVQNSVISLFM- 183 (569)
Q Consensus 117 ~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~- 183 (569)
.+..+|++.+... ..|+...|...+....+.++. +...++|+..+. .|. .+ +..+|...+....
T Consensus 121 ---~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 121 ---VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp ---HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 8888998888753 136777777777665554443 334467777665 355 44 3467777776543
Q ss_pred --------hcCCHHHHHHHHhhcCC-CCh---hHHHHHHHHHHh-------------cCCHHHHHHHHHhc-------CC
Q 038890 184 --------ACGFVTSARMLFDEMSN-RDV---VSWNAMIIGYLR-------------SGDLDVALDLFRRM-------KK 231 (569)
Q Consensus 184 --------~~g~~~~A~~~~~~~~~-~~~---~~~~~l~~~~~~-------------~g~~~~A~~~~~~~-------~~ 231 (569)
..++++.+..+|++... |.. .+|......-.. ..+++.|...+.++ .+
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 23456778888888776 321 223221111000 12233344444331 11
Q ss_pred --------------C--C------hhHHHHHHHHHHhCC-------ChHHHHHHHHHchhccccCCCCccHHHHHHHHHH
Q 038890 232 --------------R--N------IFSWNSIITGFVQGG-------RAREALELFQEMQSSSVEEMVKPDKITIASVLSA 282 (569)
Q Consensus 232 --------------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~ 282 (569)
| + ...|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-----~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-----VCFAPEIWFNMANY 352 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-----cCCCHHHHHHHHHH
Confidence 0 0 124555555433332 123456778887631 34567788888887
Q ss_pred HHccCCHHHHH-HHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-------------CC----------
Q 038890 283 CAYLGAIDHGK-WVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-------------KD---------- 338 (569)
Q Consensus 283 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~---------- 338 (569)
+...|+.+.|. .+|+..... +|.+...+...+....+.|+++.|.++|+.+.. |+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 88889988996 999999875 356667778888899999999999999998764 21
Q ss_pred --hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhHHhcCCCCCHhHHHH
Q 038890 339 --TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS-GLVEKGRWCFVMMRHVYLVEPHVYHYAC 415 (569)
Q Consensus 339 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
...|...+....+.|+.+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+...+.+ +.+...|..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHH
Confidence 2357777777778899999999999998751112233443333332333 55999999999999765 556777888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 416 MIDILSRAGLFSEAERLIRSM-PMEP----DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
.++.....|+.+.|..+|++. ...| ....|...+.--...|+.+.+..+.+++.+..|+++.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999889999999999999998 3333 3457888888888999999999999999999998753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=119.48 Aligned_cols=237 Identities=14% Similarity=0.025 Sum_probs=148.5
Q ss_pred ccCCcHHHHHHHHHHHHhCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHH
Q 038890 149 KRLDGLVGASVYGQVVKFGVC---DDVFVQNSVISLFMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVA 222 (569)
Q Consensus 149 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 222 (569)
..|++++|...++.+++.... .+..++..+..++...|++++|...|++..+ .+..+|..+...+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 345566666666666654321 1244555666666666666666666666543 2455666666666666677777
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038890 223 LDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYL 299 (569)
Q Consensus 223 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 299 (569)
...|+++.+ .+...+..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+...
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666666553 34667888888888888888888888888732 344334444445556678888888888877
Q ss_pred HHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038890 300 RRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKD-------TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP 372 (569)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 372 (569)
.... +++...+ .++..+...++.++|...+......+ ...|..+...+...|++++|...|++.... .|
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV 246 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence 7664 3444444 36667777778888888888776542 356667777777777777777777777764 34
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCF 397 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~ 397 (569)
+.. .....++...|++++|...+
T Consensus 247 ~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTC--HHHHHHHHHHHHHHHC----
T ss_pred hhH--HHHHHHHHHHHHHHhhHHHH
Confidence 221 12233445556666665544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=128.14 Aligned_cols=267 Identities=13% Similarity=0.016 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h----hHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHH
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSN--RD-V----VSWNAMIIGYLRSGDLDVALDLFRRMKKR---------NIFSW 237 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 237 (569)
.+..+...+...|++++|...|++..+ |+ . ..|..+...|...|++++|+..|++..+. ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334455566667777777777666543 21 1 24555555555556666666555554320 12234
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDM 317 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (569)
..+...|...|++++|...|++........+-. +....++..+...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDR----------------------------------LSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch----------------------------------HHHHHHHHHHHHH
Confidence 445555555555555555555554211000000 1112334444455
Q ss_pred HHhcCC-----------------hHHHHHHHhhCCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-
Q 038890 318 YGKCGC-----------------VERAYGVFKEMPK-------K--DTLAWTAMISVFALNGYGKEAFDTFREMEAEGV- 370 (569)
Q Consensus 318 ~~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 370 (569)
|...|+ +++|...+++..+ + ....+..+...+...|++++|+..+++..+...
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 555555 5555555444321 1 123566677778888888888888877764211
Q ss_pred CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHhC------
Q 038890 371 RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP----HVYHYACMIDILSRAGLFSEAERLIRSM------ 436 (569)
Q Consensus 371 ~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 436 (569)
.++ ...+..+..++...|++++|...+++......-.. ...++..+..+|...|++++|...+++.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011 23677788888999999999999988764331111 1467788899999999999999999887
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 437 -PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 437 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
+..+ ...++..+...+...|++++|.+.++++.+..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1111 2347788889999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-12 Score=121.16 Aligned_cols=238 Identities=10% Similarity=-0.016 Sum_probs=139.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHchhccccCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C----cchh
Q 038890 237 WNSIITGFVQGGRAREALELFQEMQSSSVEEMVK-PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-C----DVVI 310 (569)
Q Consensus 237 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~ 310 (569)
+..+...+...|++++|...+++........+.. ....++..+...+...|++++|...+++..+.... + ...+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 4444444555555555555554433110000001 11334444445555555555555555544332100 0 1224
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChhHHHHH
Q 038890 311 GTALVDMYGKCGC--------------------VERAYGVFKEMPK-----K----DTLAWTAMISVFALNGYGKEAFDT 361 (569)
Q Consensus 311 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~ 361 (569)
+..+...|...|+ +++|...+++... . ....+..+...+...|++++|+..
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555565 5666555554321 1 123566677777888888888888
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHH
Q 038890 362 FREMEAEGV-RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 362 ~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
+++..+... .++ ..++..+...+...|++++|...+++......-..+ ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 877654210 011 236777778888889999999888877643211111 45677888899999999999999
Q ss_pred HHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 433 IRSM-------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 433 ~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
+++. +..+ ...++..+...+...|++++|...++++.+..+.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8877 1111 1347778888899999999999999999887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-12 Score=123.55 Aligned_cols=224 Identities=8% Similarity=-0.096 Sum_probs=142.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHh----CCCC-cchhHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----ChhHHHHH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRS----GLDC-DVVIGTALVDMYGKCGCVERAYGVFKEMPK-----K-----DTLAWTAM 345 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l 345 (569)
..+...|++++|...++++.+. +.++ ...++..+...|...|+++.|...+.+..+ + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556666666666555442 1111 234455556666666666666655554432 1 12356667
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CC-CCCHhHHHHH
Q 038890 346 ISVFALNGYGKEAFDTFREMEAEGV-RPN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY---LV-EPHVYHYACM 416 (569)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l 416 (569)
...|...|++++|+..|++..+... .++ ..++..+..++...|++++|...+++..+.. +- +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7777777888888877777654210 011 2367777888888888888888888776421 11 2235677888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 417 IDILSRAGLFSEAERLIRSM-------PMEPDVFVWGALLGGCQMHGN---VELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
..++.+.|++++|...+++. +.+.....+..+...+...|+ +++|..++++. ...|....++..++..|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888889988888888876 111122335667777778888 67777777665 22244456788899999
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 038890 487 AKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~ 505 (569)
.+.|++++|...+++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-13 Score=124.43 Aligned_cols=240 Identities=11% Similarity=0.057 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHchhccccC---CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CCC
Q 038890 235 FSWNSIITGFVQGGRAREALELFQEMQSSSVEE---MVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS------GLD 305 (569)
Q Consensus 235 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 305 (569)
.++..+...+...|++++|..+|+++....... ..+.....+..+..++...|++++|...++++.+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566666666666666666666665210000 11223344555555555556666665555554432 111
Q ss_pred CcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHH
Q 038890 306 CDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAE------GVRP-NHVTFV 378 (569)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~ 378 (569)
+. ...++..+...+...|++++|+..+++..+. +..| ....+.
T Consensus 108 ~~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 108 PA------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HH------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hH------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 10 1233444555555555555555555555432 1112 234566
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhc-----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---------CCCC-
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVY-----L-VEPHVYHYACMIDILSRAGLFSEAERLIRSM-P---------MEPD- 441 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~- 441 (569)
.+...+...|++++|...++.+.+.. + -+....++..+..+|...|++++|...++++ . ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 66677777777777777777766431 1 1122356677777777788888887777766 1 1111
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 442 ------VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 442 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222333344566667777778888777888888899999999999999999999998765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=9.9e-12 Score=107.26 Aligned_cols=167 Identities=10% Similarity=0.022 Sum_probs=127.8
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038890 307 DVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA 383 (569)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 383 (569)
+..+|..+...|...|++++|...|++..+ .+..+|..+..++...|++++|+..+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 345566666666666666666666665542 355667777777888888888888888877643 2245666777777
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...++++.+...+....... +.+...+..+..++.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888899999999988887544 456778888899999999999999999888 4444 677889999999999999999
Q ss_pred HHHHHHHhhcCCCCh
Q 038890 462 EKVAQYLIDLDPLNH 476 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~ 476 (569)
++.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-10 Score=107.00 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=135.6
Q ss_pred HHHHHHHHHchhccccCCCCccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHhCCCCcchhHHHHHH
Q 038890 251 REALELFQEMQSSSVEEMVKPDKITIASVLSACA-------YLGAI-------DHGKWVHGYLRRSGLDCDVVIGTALVD 316 (569)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (569)
++|..+|++.... .+.+...|..++..+. ..|++ ++|..+|++..+.-.+.+...+..++.
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5666677766531 1344555555555543 23554 677777777766311334456667777
Q ss_pred HHHhcCChHHHHHHHhhCCC--C-Chh-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHH
Q 038890 317 MYGKCGCVERAYGVFKEMPK--K-DTL-AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC-AHSGLVE 391 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~ 391 (569)
.+.+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 77777777777777776554 2 233 67777777777777777777777777643 22333443332222 1257777
Q ss_pred HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 392 KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-P---MEP--DVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
.|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++
T Consensus 187 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777776544 345667777777777777777777777776 2 244 3456677777777777777777777
Q ss_pred HHHhhcCCCCh
Q 038890 466 QYLIDLDPLNH 476 (569)
Q Consensus 466 ~~~~~~~p~~~ 476 (569)
+++.+..|++.
T Consensus 265 ~~a~~~~p~~~ 275 (308)
T 2ond_A 265 KRRFTAFREEY 275 (308)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHccccc
Confidence 77777777644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-11 Score=117.37 Aligned_cols=233 Identities=7% Similarity=-0.107 Sum_probs=163.7
Q ss_pred HHHHHHhCCChHHHHHHHHHchhccccCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC------CCcchhHH
Q 038890 240 IITGFVQGGRAREALELFQEMQSSSVEEMVKP-DKITIASVLSACAYLGAIDHGKWVHGYLRRSGL------DCDVVIGT 312 (569)
Q Consensus 240 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 312 (569)
....+...|++++|...|++........+-.+ ...++..+..++...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45566777777777777777653210011111 235666677777777777777777777665311 11134567
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK-----KD----TLAWTAMISVFALNGYGKEAFDTFREMEAE----GV-RPNHVTFV 378 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 378 (569)
.+...|...|++++|...|++..+ .+ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888776643 11 246778888899999999999999888762 23 22356788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCC---CCCHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLV---EPHVYHYACMIDILSRAGL---FSEAERLIRSMPMEPD-VFVWGALLGG 451 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 451 (569)
.+..++...|++++|...+++..+...- +.....+..+...+...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999887643211 1112335678888888898 8999999999855554 3477788899
Q ss_pred HHhcCCHHHHHHHHHHHhhcC
Q 038890 452 CQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~ 472 (569)
+...|++++|...++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988743
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-11 Score=102.77 Aligned_cols=163 Identities=12% Similarity=-0.006 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34455556666666666666666655432 2245566666677777777777777777776443 34566777777788
Q ss_pred HHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 038890 421 SRAGLFSEAERLIRSM-P-MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 498 (569)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++.+.|++++|..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776 2 2346677888888888999999999999999998888888999999999999999999999
Q ss_pred HHHHHHCC
Q 038890 499 RNLMKERG 506 (569)
Q Consensus 499 ~~~m~~~g 506 (569)
+++..+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 98886643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=127.44 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=143.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACM 416 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 416 (569)
+..+|+.+...+...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+..|++..+.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3467888888899999999999999998874 444 6788889999999999999999999998644 4567899999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 417 IDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
..+|...|++++|++.|++. .+.| +...|..+..++...|++++|++.|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999988 5556 577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 038890 495 VKKTRNLMKE 504 (569)
Q Consensus 495 A~~~~~~m~~ 504 (569)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-10 Score=107.34 Aligned_cols=212 Identities=8% Similarity=-0.038 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHH
Q 038890 290 DHGKWVHGYLRRSGLDCDVVIGTALVDMYG-------KCGCV-------ERAYGVFKEMPK---K-DTLAWTAMISVFAL 351 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 351 (569)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888764 667788888887776 35886 899999998654 2 55689999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHH-HcCCHHH
Q 038890 352 NGYGKEAFDTFREMEAEGVRPNH-V-TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILS-RAGLFSE 428 (569)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 428 (569)
.|++++|..+|++..+. .|+. . .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 5543 3 78888899999999999999999998533 344555554444322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCC-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 429 AERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDL---DPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 429 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
|..+|++. ...| +...|..++..+.+.|++++|..+|+++.+. .|. +...|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3333 6788999999999999999999999999996 443 6678999999999999999999999999
Q ss_pred HHCC
Q 038890 503 KERG 506 (569)
Q Consensus 503 ~~~g 506 (569)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-09 Score=112.10 Aligned_cols=404 Identities=10% Similarity=0.011 Sum_probs=275.2
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---cHHHHHHHHHHHHhCC-C
Q 038890 94 SDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLD---GLVGASVYGQVVKFGV-C 169 (569)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~ 169 (569)
.|...|..++..+...+... .+..+|+.+... .+.....|...+..-.+.++ .+.+..+|++.+...+ .
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~------~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~ 136 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWK------QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN 136 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred CCHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence 48899999999998888888 999999999985 33355567777777778888 9999999999988652 4
Q ss_pred CcHhHHHHHHHHHHhcCCH--------HHHHHHHhhcC------CC-ChhHHHHHHHHHHh---------cCCHHHHHHH
Q 038890 170 DDVFVQNSVISLFMACGFV--------TSARMLFDEMS------NR-DVVSWNAMIIGYLR---------SGDLDVALDL 225 (569)
Q Consensus 170 ~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~~---------~g~~~~A~~~ 225 (569)
|++..|...+....+.++. +...++|+... .+ +...|...+..... .++++.+..+
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~i 216 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKL 216 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHH
Confidence 7888888888766665543 33446776533 22 34578877765442 3457889999
Q ss_pred HHhcCC-CC--h-hHHH---HHHHHHH----------hCCChHHHHHHHHHchhc--cccCCC------------Cc---
Q 038890 226 FRRMKK-RN--I-FSWN---SIITGFV----------QGGRAREALELFQEMQSS--SVEEMV------------KP--- 271 (569)
Q Consensus 226 ~~~~~~-~~--~-~~~~---~l~~~~~----------~~g~~~~a~~~~~~m~~~--~~~~~~------------~p--- 271 (569)
|++... |. . .+|. .+...+. ...+++.|...+.++... ++...+ ++
T Consensus 217 y~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 217 YKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 998875 21 1 2232 2221110 011234445555543210 101111 11
Q ss_pred -c---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHH-HHHhhCCC---
Q 038890 272 -D---KITIASVLSACAYLG-------AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAY-GVFKEMPK--- 336 (569)
Q Consensus 272 -~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--- 336 (569)
+ ...|...+.---..+ ..+.+..+|+++.... +....+|...+..+...|+.++|. .+|+....
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P 375 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP 375 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence 1 123333333222221 1344567788887763 667888888888889999999996 99887653
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHccCCHHHHHH
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEG---------VRPN------------HVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
.+...|...+......|+++.|..+|+++.... -.|+ ...|...+....+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 355667778888889999999999999988631 0132 2357777777788899999999
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRA-GLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
+|..+.+..+ ......|...+..-.+. ++.+.|..+|+.. ..+.+...|...+......|+.+.|..+|++++...
T Consensus 456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999986411 12234444333333344 4589999999988 333356677788888888999999999999999988
Q ss_pred CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 473 PL---NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 473 p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
|+ ....|..++..-.+.|+.+.+..+.+++.+.-
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 73 55778888888889999999999999997653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.2e-10 Score=106.71 Aligned_cols=263 Identities=11% Similarity=-0.004 Sum_probs=175.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-Cc----ch
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK----ITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-CD----VV 309 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 309 (569)
.....+...|++++|...+++.... ....+. ..+..+...+...|+++.|...+++....... .+ ..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEE----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3445566778888888887776531 111122 24455556677778888888877776642110 11 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CH
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK-------K----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVR--P--NH 374 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~ 374 (569)
++..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 345667778888888888887776542 1 1234556777888889999999999887753221 1 23
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYA-----CMIDILSRAGLFSEAERLIRSM-PMEPD-----VF 443 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~ 443 (569)
.++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4667777888889999999999988774422111111121 2334577899999999999988 22221 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+..+...+...|++++|...++++.+..+. ...++..++.++...|++++|...+++....
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667778888999999999999988764321 1236777888999999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-10 Score=107.81 Aligned_cols=235 Identities=9% Similarity=-0.090 Sum_probs=127.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhccccCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-----cchh
Q 038890 238 NSIITGFVQGGRAREALELFQEMQSSSVEEM-VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLD-C-----DVVI 310 (569)
Q Consensus 238 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~ 310 (569)
......+...|++++|+..|++........+ .+....++..+..++...|+++.|...+.+..+.... + ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566788888888888888763210001 1112445666777777788888877777766542100 0 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHH
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAE----GVRP-NHVTFVGLLSACA 385 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~ 385 (569)
++.+...|...|++++|.+. |++..+. +..+ ...++..+..++.
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~-------------------------------~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPH-------------------------------LEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH-------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34444444455555544444 4443321 1111 1234555566666
Q ss_pred ccCCHHHHHHHHHHhHHh---cCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhc
Q 038890 386 HSGLVEKGRWCFVMMRHV---YLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PM--EPD-VFVWGALLGGCQMH 455 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~ 455 (569)
..|++++|...+++..+. .+-+....++..+..++.+.|++++|...+++. .. .|. ...+..+...+...
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 666666666666655531 011223455666666677777777777766665 11 122 23344444455555
Q ss_pred CC---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 456 GN---VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 456 ~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++ +.+|...+++. ...|.....+..++..|.+.|++++|...+++..+
T Consensus 314 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66 55555555541 11233345566777777777777777777776643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-11 Score=113.92 Aligned_cols=162 Identities=7% Similarity=-0.091 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC----C
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAE----GV-RP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP----H 409 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 409 (569)
.++..+...|...|+++.|+..+++..+. +. .+ ...++..+..+|...|++++|...|++..+...-.+ .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35666677777777877777777776542 11 11 245778888999999999999999988765321112 2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CCChh
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-P-----MEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD-----PLNHA 477 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----p~~~~ 477 (569)
..++..+..+|...|++++|+..+++. . ..| ...++..+...+...|++++|...++++.+.. |....
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467889999999999999999999887 2 334 35678889999999999999999999999864 33344
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGR---FDDVKKTRNL 501 (569)
Q Consensus 478 ~~~~l~~~~~~~g~---~~~A~~~~~~ 501 (569)
.+..+...|...|+ +.+|..++++
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 56777778888888 7778777765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=103.93 Aligned_cols=188 Identities=13% Similarity=-0.065 Sum_probs=92.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLS 382 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~ 382 (569)
+..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+. .|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34445555555555555555555554432 33444444555555555555555555555543 222 334445555
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHV-------YHYACMIDILSRAGLFSEAERLIRSM-PMEPD---VFVWGALLGG 451 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 451 (569)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5555555555555555555332 2222 23444455555555555555555554 33443 2334444444
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+.. .+..+++++....+.+...+.... ....+.+++|...+++..+..
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 432 223334444444444433332222 223344599999999988743
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-12 Score=117.25 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=147.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhCCChHHHHHHHHHchhcccc---CC
Q 038890 203 VVSWNAMIIGYLRSGDLDVALDLFRRMKK--------RN---IFSWNSIITGFVQGGRAREALELFQEMQSSSVE---EM 268 (569)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~~ 268 (569)
..++..+...+...|++++|...|+++.+ .+ ...+..+...|...|++++|...+++....... ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788899999999999999999999864 22 346888999999999999999999999843100 11
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CCCC-cchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhH
Q 038890 269 VKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS------GLDC-DVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLA 341 (569)
Q Consensus 269 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 341 (569)
.+....++..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~----------- 175 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY----------- 175 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-----------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-----------
Confidence 2334667888888999999999999999887764 1111 223344444555555555555544
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc------CCCC
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAE------GVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY------LVEP 408 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 408 (569)
++++.+. +..|+ ..++..+..++...|++++|...++++.+.. ...+
T Consensus 176 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 176 --------------------YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp --------------------HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred --------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444331 11121 2345555666666666666666666655321 0111
Q ss_pred C-------HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 409 H-------VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 409 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
. ...+..+...+...+.+.+|...++.. ...| +..++..+...|...|++++|.+.++++.++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 111222233334445555555666665 2334 4567888899999999999999999999887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.8e-11 Score=117.86 Aligned_cols=211 Identities=10% Similarity=-0.003 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDG-LVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEM 198 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 198 (569)
++++.++...... +.+...+..+...+...|++ ++|...|++.++..+. +...+..+..+|.+.|++++|...|++.
T Consensus 86 ~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 86 KTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766532 23556777777888899999 9999999999998744 6788889999999999999999999988
Q ss_pred CC--CChhHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhC--------CChHHHHHH
Q 038890 199 SN--RDVVSWNAMIIGYLRS---------GDLDVALDLFRRMKK---RNIFSWNSIITGFVQG--------GRAREALEL 256 (569)
Q Consensus 199 ~~--~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------g~~~~a~~~ 256 (569)
.+ |+...+..+...+... |++++|+..|++..+ .+...|..+..+|... |++++|+..
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 66 6667788888888888 888888888888763 3466788888888877 888888888
Q ss_pred HHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 257 FQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 257 ~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
|++..+.. .....+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+..+.
T Consensus 244 ~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 244 YAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88887321 0001367778888888888888888888888887765 4456667777778888888888877766553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-10 Score=101.68 Aligned_cols=204 Identities=10% Similarity=-0.013 Sum_probs=161.0
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHH
Q 038890 270 KPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMI 346 (569)
Q Consensus 270 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 346 (569)
+.|+..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|...|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3566888889999999999999999999999987447777777799999999999999999998764 3567888999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---HhHHHH
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPN-H-------VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH---VYHYAC 415 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 415 (569)
..+...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+...+. .|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHH
Confidence 9999999999999999999885 333 3 45777788889999999999999999853 344 577888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 416 MIDILSRAGLFSEAERLIRSM-P-MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
+..+|...|+. +++++ . ...+...+.... ....+.+++|...++++.+..|.++.+...+...
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 88888766543 23333 1 122344444433 3456678999999999999999998887777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-10 Score=96.32 Aligned_cols=166 Identities=12% Similarity=-0.041 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038890 309 VIGTALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACA 385 (569)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 385 (569)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666778888889999999999888753 56778888899999999999999999988753 335678888889999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038890 386 HSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
..|++++|...++.+.+.. +.+...+..+..++...|++++|...++++ .. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998654 567788899999999999999999999988 32 3467889999999999999999999
Q ss_pred HHHHHhhcCCCChh
Q 038890 464 VAQYLIDLDPLNHA 477 (569)
Q Consensus 464 ~~~~~~~~~p~~~~ 477 (569)
.++++.+..|.+..
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999998877654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-09 Score=103.23 Aligned_cols=221 Identities=11% Similarity=-0.046 Sum_probs=127.4
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCcHh----HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHH
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDDVF----VQNSVISLFMACGFVTSARMLFDEMSN-----RDV----VSWNAMII 211 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~ 211 (569)
..+...|+++.|...++..+......+.. .++.+..++...|++++|...+++... .+. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556789999999998888765332322 455666778888898888888877654 121 22455666
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHH
Q 038890 212 GYLRSGDLDVALDLFRRMKK-------R----NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVL 280 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll 280 (569)
.+...|++++|...+++..+ + ....+..+...+...|++++|...+++........+......++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 67777777777777766542 1 122455566777777888888887777653221111111234566666
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCcc-hhHH-----HHHHHHHhcCChHHHHHHHhhCCCCCh-------hHHHHHHH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLDCDV-VIGT-----ALVDMYGKCGCVERAYGVFKEMPKKDT-------LAWTAMIS 347 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~ 347 (569)
..+...|++++|...+++.......++. ..+. ..+..+...|++++|...++....... ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 6777777777777777776653211111 1111 122335566666666666665543211 12333444
Q ss_pred HHHHcCChhHHHHHHHHH
Q 038890 348 VFALNGYGKEAFDTFREM 365 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m 365 (569)
.+...|++++|...+++.
T Consensus 262 ~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444455555555544443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-10 Score=104.41 Aligned_cols=235 Identities=10% Similarity=0.034 Sum_probs=119.2
Q ss_pred hCCChHHHHHHHHHchhccc---cCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CC-CCcchhHHHHH
Q 038890 246 QGGRAREALELFQEMQSSSV---EEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRS------GL-DCDVVIGTALV 315 (569)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 315 (569)
..|++++|+..|++....-. ....+....++..+..++...|++++|...++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555555442100 1112234556666677777777777777777766543 11 12234455555
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 316 DMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
..|...|++++|...|++.. .++++......+....++..+...+...|++++|..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRAL------------------------EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHH------------------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH------------------------HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55556666655555554322 111111100001123455566666666677777766
Q ss_pred HHHHhHHhc-----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcC--
Q 038890 396 CFVMMRHVY-----L-VEPHVYHYACMIDILSRAGLFSEAERLIRSM----------PMEPD-VFVWGALLGGCQMHG-- 456 (569)
Q Consensus 396 ~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~l~~~~~~~~-- 456 (569)
.+++..+.. + -+....++..+..+|...|++++|..+++++ ...+. ...|..+.......+
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 666665430 0 1112355666677777777777777776655 11222 122333332222222
Q ss_pred ----CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 457 ----NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 457 ----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+..+...++......|....++..++.+|.+.|++++|..++++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223333333333333355566788888888889999999988887754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.8e-09 Score=94.18 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCCC
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMYAKA----------GRFDDVKKTRNLMKERGIRKEVP 512 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~ 512 (569)
..+...+...|++++|+..|+++++..|++ +.++..++.+|... |++++|...++++.+.. |+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~-- 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PD-- 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TT--
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CC--
Confidence 567788999999999999999999999884 45788999999877 99999999999998744 33
Q ss_pred ceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhC
Q 038890 513 GCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNG 553 (569)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (569)
++...++...+.++.+++.+.
T Consensus 228 --------------------~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 --------------------SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------------CTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHHHHHHHh
Confidence 334566777777776666553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.1e-10 Score=115.47 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=105.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSA 383 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 383 (569)
...++.|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+. .| +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 33444444555555555555555544332 23455666666666667777777777776663 33 35667777777
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777543 345677777888888888888888888777 4455 456777788888888888888
Q ss_pred HHHHHHHhhc
Q 038890 462 EKVAQYLIDL 471 (569)
Q Consensus 462 ~~~~~~~~~~ 471 (569)
.+.++++.++
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.9e-09 Score=85.13 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=93.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQM 454 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 454 (569)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|..+++++ .. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455556666677777777776666432 345566666777777777777777777766 22 2356677777888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 455 HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.|++++|.+.++++.+..|.++.++..++.++.+.|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888876643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-08 Score=95.38 Aligned_cols=226 Identities=10% Similarity=-0.030 Sum_probs=134.5
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCcc-HHHHHHHHHHHHccCCHHHHHHHH
Q 038890 218 DLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPD-KITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
++++|...|++. ...|...|++++|...|.+........+.+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666666554 45667778888888888776532101121222 456667777777777777777777
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCC-CC-
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALN-GYGKEAFDTFREMEAEGVR-PN- 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-p~- 373 (569)
++..+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 665542 1222332222 12455666667775 7777777777776542110 01
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-
Q 038890 374 ---HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-----YHYACMIDILSRAGLFSEAERLIRSM-PMEPDVF- 443 (569)
Q Consensus 374 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 443 (569)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|+..|++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2456777778888888888888888877533111111 15667777888888888888888887 5455422
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 444 -----VWGALLGGCQ--MHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 444 -----~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
.+..++.++. ..+++++|+..|+++..++|.....+.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 2344455553 356678888888777777765544333
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=102.09 Aligned_cols=186 Identities=12% Similarity=0.033 Sum_probs=126.4
Q ss_pred HHHhcCChHHHHHHHhhCCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPK-------K--DTLAWTAMISVFALNGYGKEAFDTFREMEAE----GVRP-NHVTFVGLLS 382 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~ 382 (569)
.|...|++++|...|.+... + ...+|+.+..+|...|++++|+..|++..+. |-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666655554432 1 1345667777777777888777777776542 1111 1346778888
Q ss_pred HHHcc-CCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 038890 383 ACAHS-GLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP---DV-----FVWGAL 448 (569)
Q Consensus 383 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l 448 (569)
.|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|+..|++. ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 89986 9999999999988754310111 356888999999999999999999988 2222 21 257778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChh-----HHHHHHHHHH--HcCChHHHHHHHHHH
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPLNHA-----FYVNLCDMYA--KAGRFDDVKKTRNLM 502 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m 502 (569)
..++...|++++|...++++.++.|.... .+..++.++. ..+++++|...|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 88899999999999999999999887544 3445666664 356788888887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-09 Score=98.12 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChhH
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMH----------GNVELGEKVAQYLIDLDPLNHAF 478 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 478 (569)
..+..+|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56788899999999999999988 33333 45777778888766 89999999999999999998643
Q ss_pred ---HHHHHHHHHHcCChHH
Q 038890 479 ---YVNLCDMYAKAGRFDD 494 (569)
Q Consensus 479 ---~~~l~~~~~~~g~~~~ 494 (569)
...+...+.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4445555555554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-08 Score=91.90 Aligned_cols=159 Identities=10% Similarity=0.000 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-----CHhHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEP-----HVYHYA 414 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 414 (569)
++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.+.+. .| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHH
Confidence 33444555555555555555555554433211 2334445555555555566665555555532 23 123333
Q ss_pred HHHHHH--HHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----------CCCChhHH
Q 038890 415 CMIDIL--SRAG--LFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDL----------DPLNHAFY 479 (569)
Q Consensus 415 ~l~~~~--~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~~~ 479 (569)
.|+.++ ...| ++.+|..+|+++ ...|+..+...++.++...|++++|++.++.+.+. +|.++.++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 333331 2222 555555555555 33343222222333555556666666665554443 25555555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 480 VNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 480 ~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
..++......|+ +|.++++++.+
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHH
Confidence 555545555554 55555555554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=9.5e-09 Score=91.54 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNH---AFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
.+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 456678899999999999999999999876 5689999999999999999999999887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-08 Score=90.31 Aligned_cols=180 Identities=12% Similarity=0.041 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038890 292 GKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-----KDTLAWTAMISVFALNGYGKEAFDTFREME 366 (569)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (569)
+...+++....+ +++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444445666777777777777777776533 234566677788888889999999998887
Q ss_pred HCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038890 367 AEGVRP-----NHVTFVGLLSAC--AH--SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM- 436 (569)
Q Consensus 367 ~~~~~p-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 436 (569)
+. .| +..+...+..++ .. .++++.|..+|+++...+ |+..+-..+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 73 55 355556666553 22 338899999999987543 54333334444888999999999998765
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 437 PM----------EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 437 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
.. .| |..++..++......|+ +|.++++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 24 55677567666666777 88999999999999988653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=94.34 Aligned_cols=141 Identities=9% Similarity=-0.078 Sum_probs=105.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL 425 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (569)
..+...|++++|+..+...... .|+ ...+..+...|...|++++|...|++..+.. +.+..+|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 3344556777777777766542 233 2345567777888888888888888887544 4567888888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEK-VAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
+++|+..|++. ...| +...+..+...+.+.|++++|.+ +++++.+++|.++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888887 5455 56788888888888888876555 4688999999999888888888877774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=113.99 Aligned_cols=145 Identities=7% Similarity=-0.096 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. +.+...|..+..+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 344444444444444444444444444321 1123344444444444444444444444444322 2233444444444
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 420 LSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
+.+.|++++ ++.|++. ...| +...|..+..++...|++++|++.|+++.+.+|.+..++..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 444444444 4444444 2222 333444444444444444444444444444444444444444444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=92.67 Aligned_cols=213 Identities=9% Similarity=-0.022 Sum_probs=119.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhcccc---CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-------
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVE---EMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSG------- 303 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 303 (569)
..++..+...|...|++++|...+++....... ...+....++..+..++...|++++|...+.++.+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456788888999999999999999887632100 1123346678888899999999999999998877641
Q ss_pred CCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 038890 304 LDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRP-NHVTFVGLLS 382 (569)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 382 (569)
.+....++..+...|...|++++|...|++..+ ++..... +..| ...++..+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------------~~~~~~~-~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE------------------------IYATRLG-PDDPNVAKTKNNLAS 177 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHSC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------HHHHhcC-CCCHHHHHHHHHHHH
Confidence 122234455555555555665555555543221 1111000 1112 1235555666
Q ss_pred HHHccCCHHHHHHHHHHhHHhc------CCCC-CHhHHHHHHHHHHHc------CCHHHHHHHHHhCC-CCC-CHHHHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVY------LVEP-HVYHYACMIDILSRA------GLFSEAERLIRSMP-MEP-DVFVWGA 447 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~ 447 (569)
++...|++++|...+++..+.. ...+ ....|..+...+... ..+..+...++..+ ..| ...++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6666666666666666655321 0111 122233333333222 22444445555552 223 3457778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDL 471 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~ 471 (569)
+...+...|++++|...++++.+.
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888899999999998887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-08 Score=93.86 Aligned_cols=176 Identities=9% Similarity=-0.072 Sum_probs=142.0
Q ss_pred hHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 038890 324 VERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHV 403 (569)
Q Consensus 324 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 403 (569)
.+.....+......+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4445555555555566677788888999999999999999998753 225678888899999999999999999998854
Q ss_pred cCCCCCHhHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhH
Q 038890 404 YLVEPHVYHY-ACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN--HAF 478 (569)
Q Consensus 404 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 478 (569)
. |+.... ......+...++.++|+..+++. ...| +...+..+...+...|++++|...++++.+.+|.+ ..+
T Consensus 181 ~---p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 D---QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp G---CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred h---cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3 554333 33333466778888888888887 4344 67889999999999999999999999999999987 889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-08 Score=87.08 Aligned_cols=163 Identities=11% Similarity=-0.101 Sum_probs=129.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 337 KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG----LVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
.++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|+...+ .-++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 356667777777777888888888888887765 55666667777776 6 88999999988874 346677
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 413 YACMIDILSR----AGLFSEAERLIRSM-PMEPD---VFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 413 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
+..|...|.. .+++++|+.+|++. ...|+ ...+..|...|.. .+++++|...|+++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7888888876 78999999999988 44443 6788888888888 78999999999999888 56677889
Q ss_pred HHHHHHHHc-C-----ChHHHHHHHHHHHHCCCC
Q 038890 481 NLCDMYAKA-G-----RFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 481 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 508 (569)
.|+.+|... | ++++|..++++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999998864 3 899999999999888753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-08 Score=80.80 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677788888899999999998887653 2356677778888888899999999999888543 45677888888899
Q ss_pred HHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 421 SRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
...|++++|..+++++ .. +.+..++..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 32 336778888889999999999999999999888775
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-07 Score=91.60 Aligned_cols=351 Identities=10% Similarity=-0.026 Sum_probs=200.1
Q ss_pred CChhHHHHHhhcCCC--CCcccHHHHHHHHhcCCC-CCCCCChhHHHHHHHHHHHC-CCCC-CcccHHHHHHHHH----c
Q 038890 79 GSLSYATNVFSHIKR--SDLYTYNIMIRANACKSS-ETNDTHSGKCLKLYKQMLCT-GISP-DCLTFPFLLKECT----K 149 (569)
Q Consensus 79 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~~~~~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~~~~----~ 149 (569)
|+++.+..+|+.... |++..|...+....+.++ .. ....+|+..+.. |..| +...|...+..+. .
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~------~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~ 101 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKF------KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDE 101 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHH------HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhh
Confidence 678888888888764 788888888877666553 23 567788877764 4333 3445555555443 2
Q ss_pred cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038890 150 RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRM 229 (569)
Q Consensus 150 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (569)
.++.+.+..+|+.++...+..-...|...... .+......+..++.+. .+.+..|..+++.+
T Consensus 102 ~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~-----------------~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT-----------------LPIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH-----------------hHHHHHHHHHHHHH
Confidence 35677788888888874322112233322221 1112222333332221 01122233232222
Q ss_pred CC----CChhHHHHHHHHHHhCC--C-----hHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038890 230 KK----RNIFSWNSIITGFVQGG--R-----AREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGY 298 (569)
Q Consensus 230 ~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 298 (569)
.. .+...|...+..-...+ - .+.+..+|++++.. .+.+...|...+.-+...|+.+.|..++++
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-----~p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-----FYYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 23345555555433221 1 34566788887631 345577777777777888999999999999
Q ss_pred HHHhCCCCcchhHHHHHHHHHhcCChHH-HHHHHhhCC--C-------C---ChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038890 299 LRRSGLDCDVVIGTALVDMYGKCGCVER-AYGVFKEMP--K-------K---DTLAWTAMISVFALNGYGKEAFDTFREM 365 (569)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (569)
.... |.+...+.. |....+.++ ...+.+... . + ....|...+....+.++.+.|..+|++.
T Consensus 239 Ai~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 239 GIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8887 444433332 222111111 111222111 0 0 1234555666666677888899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH
Q 038890 366 EAEGVRPNHVTFVGLLSACAH-SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEPDVFV 444 (569)
Q Consensus 366 ~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 444 (569)
.. ...+...|......-.. .++.+.|..+|+...+.. +.++..+...++.....|+.+.|..+|+++. .....
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~l 386 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRM 386 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH
Confidence 32 12244444322222112 236888999998888655 2345556667777788888899999988872 25677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
|...+..-...|+.+.+..+++++.+
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777778888888888887764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=89.14 Aligned_cols=124 Identities=12% Similarity=0.029 Sum_probs=102.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN 457 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 457 (569)
|...+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445567789999999998876322 223556778999999999999999999998 5555 67899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH-HHHHHHC
Q 038890 458 VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKT-RNLMKER 505 (569)
Q Consensus 458 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 505 (569)
+++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5777663
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=102.81 Aligned_cols=160 Identities=10% Similarity=-0.037 Sum_probs=125.2
Q ss_pred cCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 321 CGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCF 397 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 397 (569)
.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356789999999999999999999999998853 235678888999999999999999999
Q ss_pred HHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcC
Q 038890 398 VMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMH---GNVELGEKVAQYLIDLD 472 (569)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 472 (569)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++.+.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998654 456789999999999999999999999998 4444 577888999999999 99999999999999999
Q ss_pred CCChhHHHHHH
Q 038890 473 PLNHAFYVNLC 483 (569)
Q Consensus 473 p~~~~~~~~l~ 483 (569)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888877766
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-07 Score=85.23 Aligned_cols=221 Identities=8% Similarity=-0.003 Sum_probs=98.9
Q ss_pred HHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCcchhHHHHHHHH----Hhc---
Q 038890 251 REALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG--AIDHGKWVHGYLRRSGLDCDVVIGTALVDMY----GKC--- 321 (569)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 321 (569)
++|+.++..++... +-+...|+.--.++...+ ++++++..++.+...+ +-+..+++.-...+ ...
T Consensus 50 ~~aL~~t~~~L~~n-----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 50 ERALHITELGINEL-----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHC-----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 46666666665321 223344555555555555 6666666666666554 33344444333322 223
Q ss_pred CChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------H
Q 038890 322 GCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGK--EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL------V 390 (569)
Q Consensus 322 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~ 390 (569)
+++++++.+++.+.+ .+..+|+.-...+...|.++ ++++.++++.+.... |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 445555555554432 23444444444444445444 555555555543222 33344443333334333 4
Q ss_pred HHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038890 391 EKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE-AERLIRSM-PM----EPDVFVWGALLGGCQMHGNVELGEKV 464 (569)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~ 464 (569)
+++++.++.+.... +-|...|+.+...+.+.|+... +.+++.++ .. ..+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44444444444322 3344444444444444444222 22333333 11 12334444444444444444444444
Q ss_pred HHHHhh-cCCCChhHHH
Q 038890 465 AQYLID-LDPLNHAFYV 480 (569)
Q Consensus 465 ~~~~~~-~~p~~~~~~~ 480 (569)
++.+.+ .+|.....|.
T Consensus 281 ~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHTTCGGGHHHHH
T ss_pred HHHHHhccChHHHHHHH
Confidence 444443 3444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=85.36 Aligned_cols=156 Identities=9% Similarity=0.032 Sum_probs=94.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH-HHHc
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI-LSRA 423 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 423 (569)
+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.... |+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHHhh
Confidence 3444455555555555555544321 1123445555555555555555555555554322 222222221111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHHcCChHHHHHHH
Q 038890 424 GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN--HAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 424 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
+...+|+..+++. ...| +...+..+...+...|++++|...++++.+.+|.. +.++..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222355666655 3345 57788888888999999999999999999988764 568889999999999999999988
Q ss_pred HHHHH
Q 038890 500 NLMKE 504 (569)
Q Consensus 500 ~~m~~ 504 (569)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-08 Score=85.99 Aligned_cols=182 Identities=8% Similarity=-0.097 Sum_probs=121.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGY 354 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (569)
.+......+...|++++|...|+++.+.. |.+...+... ..... ..........+..++...|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 33444455667778888888777777653 1112221110 00000 00012233447888899999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC--HHHHHHH
Q 038890 355 GKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL--FSEAERL 432 (569)
Q Consensus 355 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~ 432 (569)
+++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|+ .+.+...
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999988853 2256788888999999999999999999998654 4567888888888876654 4455666
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 433 IRSMP-MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 433 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
++... ..|....+.....++...|++++|+..|++++++.|.+
T Consensus 147 ~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66662 22233344555666778899999999999999999974
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-08 Score=84.33 Aligned_cols=98 Identities=11% Similarity=-0.016 Sum_probs=88.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++.+++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3567788888999999999999999988 4455 6788999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-08 Score=98.30 Aligned_cols=146 Identities=12% Similarity=-0.040 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...+...|++++|+..|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 33455566666666666666666666665543 234556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 038890 364 EMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA---GLFSEAERLIRSM 436 (569)
Q Consensus 364 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 436 (569)
+..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666542 2234556666666666666666666666666433 33455666666666666 6666666666655
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-07 Score=98.77 Aligned_cols=189 Identities=12% Similarity=-0.052 Sum_probs=149.0
Q ss_pred HccCCHHHHHHHHHHHH--------HhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 038890 284 AYLGAIDHGKWVHGYLR--------RSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALN 352 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 352 (569)
...|++++|...++++. +.. +.+...+..+..+|...|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999988 432 55677888899999999999999999998764 4678899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERL 432 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 432 (569)
|++++|+..|++..+.. +-+...+..+..++...|++++ ...|++..+.. +.+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998853 2246778888999999999999 99999998654 45678999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcCCCChh
Q 038890 433 IRSM-PMEPD-VFVWGALLGGCQMHGN-----VELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 433 ~~~~-~~~p~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 477 (569)
|+++ ...|+ ...+..+..++...++ .+...+..+...+..+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9999 67776 4577777777766554 23444444444444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=7e-08 Score=90.44 Aligned_cols=221 Identities=11% Similarity=-0.006 Sum_probs=154.1
Q ss_pred hCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChH
Q 038890 246 QGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVE 325 (569)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (569)
..|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-----~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-----KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc-----ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHH
Confidence 3567788888888876422 110 0 11146677777766554 45677788888
Q ss_pred HHHHHHhhCCCC-----C----hhHHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccCCHH
Q 038890 326 RAYGVFKEMPKK-----D----TLAWTAMISVFALNGYGKEAFDTFREMEAEG---VRPN--HVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 326 ~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~ 391 (569)
+|...|.+...- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 888877765431 1 3467888889999999999999998876421 1121 3567788888888 9999
Q ss_pred HHHHHHHHhHHhcCCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHH
Q 038890 392 KGRWCFVMMRHVYLVEP----HVYHYACMIDILSRAGLFSEAERLIRSM-PM---EPD----VFVWGALLGGCQMHGNVE 459 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~ 459 (569)
+|+..|++..+...-.. ...++..+..+|.+.|++++|+..|++. .+ .++ ...+..++.++...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99999998875431111 1467888999999999999999999987 11 122 236667777788889999
Q ss_pred HHHHHHHHHhhcCCCChh-----HHHHHHHHHHHcCChHHHHHH
Q 038890 460 LGEKVAQYLIDLDPLNHA-----FYVNLCDMYAKAGRFDDVKKT 498 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~ 498 (569)
+|...++++. ..|.... ....++.++ ..|+.+.+..+
T Consensus 213 ~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 213 AAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999999 8886432 244555555 56777666653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.1e-08 Score=76.40 Aligned_cols=107 Identities=7% Similarity=-0.060 Sum_probs=69.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 453 (569)
.+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45555666666677777777776666433 345666666666777777777777766666 3333 4556666777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
..|++++|++.|+++++++|.+..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7777777777777777777777666665554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-07 Score=83.35 Aligned_cols=125 Identities=13% Similarity=-0.016 Sum_probs=98.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
+..+...+...|++++|...|++.. .|+...|..+..++.+.|++++|+..|++. ...| +...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4445566677788888888887664 456777888888888888888888888877 3333 56778888888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCh----------------hHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 455 HGNVELGEKVAQYLIDLDPLNH----------------AFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.|++++|++.++++.+..|.+. .++..++.+|.+.|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8899999999988888777766 888899999999999999999999887654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-07 Score=79.07 Aligned_cols=128 Identities=6% Similarity=-0.020 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|+++.|...|+...+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345666777788888888888888887543 456778888888999999999999998887 3334 677888999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH--HHHcCChHHHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM--YAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 504 (569)
...|++++|...++++.+..|.+...+..+..+ +.+.|++++|...++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988887555554 8888999999999987743
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.3e-06 Score=76.48 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=171.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC--ChHHHHHHHhhCCC---CChhHHHHHHHHH----HHc---C
Q 038890 286 LGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG--CVERAYGVFKEMPK---KDTLAWTAMISVF----ALN---G 353 (569)
Q Consensus 286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g 353 (569)
....++|+.+++.+...+ |-+..+++.-..++...| ++++++++++.+.. .+..+|+.-...+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 344568899999998876 556677888888888888 99999999998864 3556677655555 555 7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC------
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE--KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL------ 425 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 425 (569)
++++++.+++++.+... -+...|..-...+...|.++ +++..++.+.+.. +-|...|+.....+.+.|.
T Consensus 125 ~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhh
Confidence 89999999999998643 36677877777777788887 9999999999665 5677888888877777776
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNV-ELGEKVAQYLIDLD---PLNHAFYVNLCDMYAKAGRFDDVKKTR 499 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 499 (569)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..++.++.+.+ |.++.++..++.+|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 89999999887 4444 778898888888888874 44667888877766 888999999999999999999999999
Q ss_pred HHHHH
Q 038890 500 NLMKE 504 (569)
Q Consensus 500 ~~m~~ 504 (569)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.4e-08 Score=81.31 Aligned_cols=157 Identities=8% Similarity=-0.116 Sum_probs=108.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSA-CA 385 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 385 (569)
....+...+...|++++|...|++..+ .+...+..+...+...|++++|+..|++.... .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344566677778888888888887764 35667777778888888888888888776653 2333322222111 11
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHH
Q 038890 386 HSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD---VFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a 461 (569)
..+....+...++...+.. +.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2222234677777777543 445788888888888999999999888887 55554 45788888888888999888
Q ss_pred HHHHHHHhh
Q 038890 462 EKVAQYLID 470 (569)
Q Consensus 462 ~~~~~~~~~ 470 (569)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-06 Score=81.28 Aligned_cols=161 Identities=10% Similarity=0.003 Sum_probs=121.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGV-RPNHV----TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYA 414 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 414 (569)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999999876422 22211 2334666677788999999999998853221233 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhHH
Q 038890 415 CMIDILSRAGLFSEAERLIRSM-----PM---EPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NHAFY 479 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~ 479 (569)
.+..+|...|++++|+..|+++ .. .+. ..++..+...|...|++++|...++++.+..+. -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999998887 11 122 247888999999999999999999999875422 26789
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHH
Q 038890 480 VNLCDMYAKAGR-FDDVKKTRNLMKE 504 (569)
Q Consensus 480 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 504 (569)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.9e-08 Score=85.19 Aligned_cols=184 Identities=11% Similarity=-0.030 Sum_probs=114.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--cchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch---hHHH
Q 038890 272 DKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDC--DVVIGTALVDMYGKCGCVERAYGVFKEMPK--K-DT---LAWT 343 (569)
Q Consensus 272 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~ 343 (569)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+ | +. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566677788888888888888888754211 134566777888888888888888887653 2 11 1344
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 344 AMISVFAL------------------NGYGKEAFDTFREMEAEGVRPNHV-TFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 344 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
.+..++.. .|++++|+..|+++.+. .|+.. ........ ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 23445555555554442 22221 11110000 0000000
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
......+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 011135667888999999999999988 33443 25688889999999999999999999998888754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-08 Score=81.98 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=85.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++.+.+|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777888899999999999999887 3344 6778888999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...|++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-07 Score=80.73 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHH
Q 038890 234 IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDK-ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 234 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
...+......+...|++++|+..|++.... .|+. ..+... .... ..........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~ 58 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWT-----NVDK--------------NSEISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHH-----HSCT--------------TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHh-----hhcc--------------hhhhhHHHHH
Confidence 344555667889999999999999998742 3432 223220 0000 0011122334
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
.+..+|.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 466777777777777777776643 356677777888888888888888888887742 2245566666666654443
Q ss_pred --HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038890 390 --VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALL 449 (569)
Q Consensus 390 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 449 (569)
.+.+...++.... ..|....+.....++...|++++|+..|++. ...|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3344444444431 1222334445566667778888888888887 7778765544433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=87.34 Aligned_cols=133 Identities=8% Similarity=-0.052 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLG 450 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 450 (569)
.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...++++ ...|+.........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344567777888899999999999999998655 557788999999999999999999999999 55676654333333
Q ss_pred -HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 451 -GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 451 -~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+...++.+.|+..++++.+.+|+++.++..++.+|...|++++|...++++.+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 36678888999999999999999999999999999999999999999999998854
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-07 Score=85.72 Aligned_cols=164 Identities=9% Similarity=-0.026 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CCC--Hh
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH-----VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV--EPH--VY 411 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 411 (569)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788889999999999887765322111 22344556677889999999999887643211 111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------Ch
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM----PMEPD-----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL------NH 476 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 476 (569)
+|+.+...|...|++++|+..|+++ ...|+ ..++..+...|...|++++|...++++.+..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999876 11222 258888999999999999999999999875421 25
Q ss_pred hHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 038890 477 AFYVNLCDMYAKAGRFDDV-KKTRNLMKE 504 (569)
Q Consensus 477 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 504 (569)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=75.39 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=89.9
Q ss_pred CCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 407 EPH-VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 407 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 344 367788899999999999999999998 4445 6789999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHC
Q 038890 484 DMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.+|...|++++|.+.|++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-06 Score=87.35 Aligned_cols=96 Identities=7% Similarity=-0.070 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHh
Q 038890 118 SGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGF-VTSARMLFD 196 (569)
Q Consensus 118 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 196 (569)
.+.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.|+ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55677777777762 344 8888888888888774 4688888888777766663 344455555
Q ss_pred hcCC------CChhHHHHHHHHHH----hcCCHHHHHHHHHhcCC
Q 038890 197 EMSN------RDVVSWNAMIIGYL----RSGDLDVALDLFRRMKK 231 (569)
Q Consensus 197 ~~~~------~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 231 (569)
.... .+...|...+..+. ..++.+.+..+|++...
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 4332 34566666666543 23566777777777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-07 Score=72.56 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 451 (569)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|..+++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4566677777788888888888888877543 445677788888888888888888888877 22 3366788888888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 899999999999999999999998888888888776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-07 Score=73.94 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 451 (569)
...+..+...+...|+++.|...++...... +.+...+..+..++...|++++|+..+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3456667777788888888888888887543 446777888888888889999998888877 3333 57788888889
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRF 492 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 492 (569)
+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=80.10 Aligned_cols=172 Identities=11% Similarity=-0.049 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC----CHHHHHHHH
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACG----FVTSARMLF 195 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 195 (569)
+|++.|++..+.| ++..+..+...+...+++++|..+|+...+.| +...+..|..+|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 6788888888864 67778788888888999999999999998876 55667778888877 6 899999999
Q ss_pred hhcCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh----CCChHHHHHHHHHch
Q 038890 196 DEMSN-RDVVSWNAMIIGYLR----SGDLDVALDLFRRMKKRN-----IFSWNSIITGFVQ----GGRAREALELFQEMQ 261 (569)
Q Consensus 196 ~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 261 (569)
++..+ .+..++..+...|.. .+++++|+..|++..+.+ ...+..|...|.. .+++++|+..|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 88766 466778888888877 789999999999887643 5678888888888 788999999998886
Q ss_pred hccccCCCCccHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHhCC
Q 038890 262 SSSVEEMVKPDKITIASVLSACAYL-G-----AIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 262 ~~~~~~~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 304 (569)
.. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 157 ----~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 ----SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp ----HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred ----Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 32 23444666666666532 2 78899988888888773
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-06 Score=77.41 Aligned_cols=125 Identities=9% Similarity=-0.059 Sum_probs=74.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC
Q 038890 345 MISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG 424 (569)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (569)
+...+...|++++|+..|++.. .|+...+..+..++...|++++|...|+...+.. +.+...|..+..++...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcc
Confidence 3444444555555555554432 3344455555555555555555555555555332 334455555555555555
Q ss_pred CHHHHHHHHHhC-C----------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 425 LFSEAERLIRSM-P----------------MEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 425 ~~~~A~~~~~~~-~----------------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
++++|+..|++. . ..| ....+..+..++...|++++|...++++.+..|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 555555555554 1 222 23677888888999999999999999999998875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-07 Score=74.21 Aligned_cols=116 Identities=10% Similarity=-0.019 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 451 (569)
...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3455666666666777777777776666332 335566666777777777777777777666 2223 56677778888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
+...|++++|.+.++++.+..|.+...+..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888777664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.6e-08 Score=88.80 Aligned_cols=192 Identities=8% Similarity=-0.096 Sum_probs=105.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH 386 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 386 (569)
.+..+...+.+.|++++|...|++... .+...|..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334444445555555555555544331 244555556666666666666666666665532 1234556666666777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHV-YHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVA 465 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 465 (569)
.|++++|...|+...+.. |+. ..+...+....+......... .......++......+.. + ..|+.++|.+.+
T Consensus 85 ~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 777777777776665322 111 111111111111111111111 112222333333333322 2 368889999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC
Q 038890 466 QYLIDLDPLNHAFYVNLCDMYAKA-GRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 466 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~ 508 (569)
+++.+.+|.+......+...+.+. +++++|.++|.++.+....
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 999999998887777777777776 7789999999988664333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=80.98 Aligned_cols=120 Identities=8% Similarity=-0.025 Sum_probs=89.6
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG-CQMHGNV--E 459 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~ 459 (569)
...|++++|...++...+.. +.+...|..+..+|...|++++|+..|++. ...| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776543 456677788888888888888888888877 3233 56677777777 6778887 8
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 460 LGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 460 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+|...++++.+..|.++.++..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888889998888888887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-07 Score=86.24 Aligned_cols=94 Identities=16% Similarity=-0.012 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++.+++|.+..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999988 4444 67889999999999999999999999999999999999999999999
Q ss_pred HcCChHHH-HHHHHHHH
Q 038890 488 KAGRFDDV-KKTRNLMK 503 (569)
Q Consensus 488 ~~g~~~~A-~~~~~~m~ 503 (569)
+.|++++| ..+++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666663
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-07 Score=75.52 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=84.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++.+.+|.++.++..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3456667778888999999999999887 3344 6778888889999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-07 Score=72.64 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777788888888888888877 3334 56788888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHCC
Q 038890 488 KAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g 506 (569)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888876643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=87.81 Aligned_cols=197 Identities=7% Similarity=-0.102 Sum_probs=148.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 038890 285 YLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFRE 364 (569)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (569)
..|++++|..++++..+... .. .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35678889999988876431 11 01115789999888765 46678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CC--CHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038890 365 MEAE----GVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLV--EP--HVYHYACMIDILSRAGLFSEAERLIRS 435 (569)
Q Consensus 365 m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 435 (569)
..+. +-.+. ..+|..+..+|...|++++|...|++..+...- .+ ...++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7652 11111 347888888999999999999999887643211 12 13577888899988 999999999988
Q ss_pred C-CC-----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 436 M-PM-----EP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN------HAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 436 ~-~~-----~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
. .+ .+ ...++..+...+...|++++|+..++++.+..|.+ ...+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11 11 14578889999999999999999999999865443 23677788888899999999999999
Q ss_pred HH
Q 038890 502 MK 503 (569)
Q Consensus 502 m~ 503 (569)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-07 Score=74.09 Aligned_cols=104 Identities=10% Similarity=-0.071 Sum_probs=89.3
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038890 371 RPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGA 447 (569)
Q Consensus 371 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 447 (569)
.|+ ...+..+...+.+.|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++. .+.| +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 344 3467777888899999999999999999654 567889999999999999999999999998 4445 5678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 448 LLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 448 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
+..++...|++++|+..|+++.+..|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=8.1e-06 Score=75.73 Aligned_cols=158 Identities=10% Similarity=-0.113 Sum_probs=119.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---Ch------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPKK---DT------LAWTAMISVFALNGYGKEAFDTFREMEAEGVR-PN----HVTFV 378 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 378 (569)
..+..+...|++++|..++++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788889999999999886542 11 12334666667778999999999999874322 22 23688
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhc----CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVY----LVEPH-VYHYACMIDILSRAGLFSEAERLIRSM-------PMEPD-VFVW 445 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 445 (569)
.+..+|...|++++|...|+++.+.. +..+. ..+|..+..+|.+.|++++|+..+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88999999999999999999887421 11122 347889999999999999999998877 22233 5688
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhh
Q 038890 446 GALLGGCQMHG-NVELGEKVAQYLID 470 (569)
Q Consensus 446 ~~l~~~~~~~~-~~~~a~~~~~~~~~ 470 (569)
..+..++...| ++++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999 46999999999876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.6e-07 Score=76.78 Aligned_cols=153 Identities=10% Similarity=-0.058 Sum_probs=91.3
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CC-CCCHhHHHHHHHHHHHcCCH
Q 038890 351 LNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVY---LV-EPHVYHYACMIDILSRAGLF 426 (569)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~ 426 (569)
..|++++|.++++.+... .......+..+...+...|++++|...+++..... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 446666666644333221 11234455666666666677777766666655311 11 11234566677777777777
Q ss_pred HHHHHHHHhC----CCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCC----hhHHHHHHHHHHHcCC
Q 038890 427 SEAERLIRSM----PMEP-D----VFVWGALLGGCQMHGNVELGEKVAQYLIDLD--PLN----HAFYVNLCDMYAKAGR 491 (569)
Q Consensus 427 ~~A~~~~~~~----~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~ 491 (569)
++|...+++. ...+ + ...+..+...+...|++++|...++++.+.. ..+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665 1112 2 2356667777778888888888888877532 112 2335778888888888
Q ss_pred hHHHHHHHHHHHH
Q 038890 492 FDDVKKTRNLMKE 504 (569)
Q Consensus 492 ~~~A~~~~~~m~~ 504 (569)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=70.96 Aligned_cols=100 Identities=10% Similarity=-0.036 Sum_probs=85.1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
+.+...+..+...+...|++++|+..|++. ...| +...|..+..++...|++++|...++++.+.+|.++.++..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345677888888888889999998888877 3334 57788888889999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCC
Q 038890 485 MYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999887643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=67.14 Aligned_cols=109 Identities=9% Similarity=0.032 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555556666666666666666666432 335556666666666667777777666665 2223 455666666677
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
...|++++|.+.++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777766666555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.8e-07 Score=71.31 Aligned_cols=94 Identities=13% Similarity=-0.036 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999988 4445 6788889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHC
Q 038890 490 GRFDDVKKTRNLMKER 505 (569)
Q Consensus 490 g~~~~A~~~~~~m~~~ 505 (569)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.9e-07 Score=74.48 Aligned_cols=100 Identities=9% Similarity=-0.045 Sum_probs=50.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 453 (569)
.+..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444455555555555555555555332 234445555555555555555555555544 2222 3444555555555
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChh
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
..|++++|...|+++++..|.+..
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HccCHHHHHHHHHHHHHhCCCchH
Confidence 555555555555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.6e-06 Score=75.78 Aligned_cols=134 Identities=13% Similarity=0.023 Sum_probs=77.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--HhHHHHHHHHHH
Q 038890 344 AMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH--VYHYACMIDILS 421 (569)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 421 (569)
.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHH
Confidence 34455666667777777766655432 3333334444456666777777777764442 10 111 235566666777
Q ss_pred HcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 422 RAGLFSEAERLIRSM--P-MEPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
+.|++++|+..|++. + ..|. .........++.+.|+.++|...|+++...+|. ..+...|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777777777777766 2 1142 235555666667777777777777777777776 5544444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=75.64 Aligned_cols=105 Identities=11% Similarity=-0.060 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 451 (569)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++. ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3466677778889999999999999988554 557888889999999999999999999988 4444 56788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
+...|++++|...|+++.+..|.++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999988776543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.5e-07 Score=69.08 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=80.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PME-PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCD 484 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 484 (569)
+...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456667777788888888888888776 223 35677888888888899999999999999998888 8888999999
Q ss_pred HHHHc-CChHHHHHHHHHHHHCCC
Q 038890 485 MYAKA-GRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 485 ~~~~~-g~~~~A~~~~~~m~~~g~ 507 (569)
++.+. |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-06 Score=68.75 Aligned_cols=111 Identities=8% Similarity=-0.149 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 456666777788888888888888887544 456788888888888899999998888887 4444 567888888899
Q ss_pred HhcCCHHHHHHHHHHHhhcC------CCChhHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLD------PLNHAFYVNLCDMYA 487 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 487 (569)
...|++++|...++++.+.+ |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777777777665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-06 Score=79.63 Aligned_cols=161 Identities=9% Similarity=-0.134 Sum_probs=113.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CCh------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HH
Q 038890 310 IGTALVDMYGKCGCVERAYGVFKEMPK---KDT------LAWTAMISVFALNGYGKEAFDTFREMEAEGV---RPN--HV 375 (569)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~ 375 (569)
.+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677778888888877764432 111 2233455566777899999999988875321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH-----VYHYACMIDILSRAGLFSEAERLIRSM-------PMEP-DV 442 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 442 (569)
+++.+...|...|++++|...|++..+.....|+ ..++..+..+|...|++++|+..+++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999887732111122 257888999999999999999998876 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 038890 443 FVWGALLGGCQMHGNVELG-EKVAQYLID 470 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 470 (569)
.+|..+...+...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788889999999999999 777888775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00013 Score=68.08 Aligned_cols=231 Identities=11% Similarity=0.016 Sum_probs=145.1
Q ss_pred HHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhc-
Q 038890 244 FVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG-AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKC- 321 (569)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 321 (569)
..+.+..++|+++++.++... +-+...|+.--.++...| .+++++.+++.+.... +-+..+++.-..++...
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 344455567888888887421 234455666666666667 5888888888888765 55666676666666665
Q ss_pred C-ChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 322 G-CVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGK--------EAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 322 g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
+ ++++++++++.+.+. +..+|+.-...+...|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 6 788888888887764 4556666555555555555 888888888876433 66677777666666665
Q ss_pred -------HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH--------------------HHHHHHHHhC-CC---
Q 038890 390 -------VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF--------------------SEAERLIRSM-PM--- 438 (569)
Q Consensus 390 -------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~--- 438 (569)
++++++.+++..... +-|...|+.+-..+.+.|+. ....+...++ +.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 677777777777544 55677777777777666653 2333333333 11
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCChhHHHHHH
Q 038890 439 ----EPDVFVWGALLGGCQMHGNVELGEKVAQYLI-DLDPLNHAFYVNLC 483 (569)
Q Consensus 439 ----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 483 (569)
.++...+..++..|...|+.++|.++++.+. +.+|-....|...+
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2455566666666666666666666666665 45565555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.6e-07 Score=72.10 Aligned_cols=94 Identities=4% Similarity=-0.033 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-------hHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH-------AFYVN 481 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 481 (569)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.+++++++.|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888877 4444 567788888888888888888888888888776543 35777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 038890 482 LCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 482 l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888899999998888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=76.07 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...|+++.+..|.+..++..+..++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 366778888899999999999998887 3334 67788999999999999999999999999999999999999999999
Q ss_pred HcCChHHHH-HHHHHHHHCC
Q 038890 488 KAGRFDDVK-KTRNLMKERG 506 (569)
Q Consensus 488 ~~g~~~~A~-~~~~~m~~~g 506 (569)
..|+.+++. ..+..|...|
T Consensus 168 ~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 998888877 5566664443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-05 Score=75.34 Aligned_cols=217 Identities=12% Similarity=0.017 Sum_probs=160.0
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHHc-C-ChhH
Q 038890 284 AYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG-CVERAYGVFKEMPK---KDTLAWTAMISVFALN-G-YGKE 357 (569)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~ 357 (569)
...+..++|+.+++.+...+ +-+..+++.-...+...| .+++++.+++.+.. .+..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 44556678999999999886 556677777777777888 59999999998865 3667788877777776 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC----
Q 038890 358 AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVE--------KGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL---- 425 (569)
Q Consensus 358 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 425 (569)
++..++++.+...+ +...|+.-...+.+.|.++ ++++.++++.+.. +-|...|+....++.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccc
Confidence 99999999876432 5666666555555555555 8889999888655 5678889888888888776
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhcC------CC
Q 038890 426 ---FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNV--------------------ELGEKVAQYLIDLD------PL 474 (569)
Q Consensus 426 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~ 474 (569)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 78889888877 4445 677888777777766653 33444444443332 56
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 475 NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 475 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++.++..|++.|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 788899999999999999999999999864
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=68.22 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...+..+...+...|++++|.+.++++ .. +.+..++..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999988 33 3467788999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHCC
Q 038890 488 KAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g 506 (569)
..|++++|..+++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=69.48 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=90.8
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
+.+...+..+...+.+.|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678889999999999999999999998 5555 67889999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCC
Q 038890 485 MYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+|.+.|++++|...+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=67.16 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=88.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3566788889999999999999999998 3334 6788899999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++|...+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=71.21 Aligned_cols=106 Identities=10% Similarity=-0.077 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGC 452 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 452 (569)
..+..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|+..|++. ...| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345566677788899999999998888544 456788888888999999999999999888 3334 566788888899
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 453 QMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
...|++++|...|+++.+..|.++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999988877665443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-06 Score=69.74 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=58.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+...+..+...+...|++++|+..|++. ...|+ ...+..+...+...|++++|+..++++.+..|.++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3445555555666666666666666655 44454 345555666666666666666666666666666666666666
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 038890 484 DMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.+|...|++++|...+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=75.45 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=95.3
Q ss_pred hcCChHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCCHH
Q 038890 320 KCGCVERAYG---VFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEA----EGVRP-NHVTFVGLLSACAHSGLVE 391 (569)
Q Consensus 320 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~~~~~ 391 (569)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44332223445566666667777777777777766654 11111 2345666777778888888
Q ss_pred HHHHHHHHhHHhcCCCC-C----HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 038890 392 KGRWCFVMMRHVYLVEP-H----VYHYACMIDILSRAGLFSEAERLIRSM----PMEPD----VFVWGALLGGCQMHGNV 458 (569)
Q Consensus 392 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 458 (569)
+|...+++......-.+ + ...+..+...+...|++++|...+++. ....+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877664311111 1 345677778888888888888887766 11112 23456777788888999
Q ss_pred HHHHHHHHHHhhc
Q 038890 459 ELGEKVAQYLIDL 471 (569)
Q Consensus 459 ~~a~~~~~~~~~~ 471 (569)
++|.+.++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-06 Score=73.10 Aligned_cols=127 Identities=10% Similarity=0.083 Sum_probs=101.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH-HHHcCCH--
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI-LSRAGLF-- 426 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 426 (569)
...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888999998887753 3356788888899999999999999999988655 4567788888888 7789998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 427 SEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999988 4444 567888899999999999999999999999999876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-06 Score=71.02 Aligned_cols=93 Identities=11% Similarity=-0.063 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..|+...+.. +.+...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 44444455555555555555555554431 1133444445555555555555555555554322 23344455555555
Q ss_pred HHcCCHHHHHHHHHhC
Q 038890 421 SRAGLFSEAERLIRSM 436 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~ 436 (569)
...|++++|+..|++.
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 5555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.2e-06 Score=69.29 Aligned_cols=128 Identities=9% Similarity=-0.107 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 340 LAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 456667777888888999988888887742 2356778888888888999999999998888554 4567788888889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 420 LSRAGLFSEAERLIRSM-PMEP-DVFVWG--ALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 420 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+...|++++|...+++. ...| +...+. ..+..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999887 3333 444443 334446778889999888887654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=70.59 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PMEPD-------------VFVWGALLGGCQMHGNVELGEKVAQYLIDL------ 471 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 471 (569)
.+......+...|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445555566666777776666665 22222 238888889999999999999999999999
Q ss_pred -CCCChhHH----HHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 472 -DPLNHAFY----VNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 472 -~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+|++..+| ...+.++...|++++|+..|++..+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-05 Score=72.74 Aligned_cols=126 Identities=10% Similarity=-0.070 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSN--RDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRN-----IFSWNSIITGFVQ 246 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~ 246 (569)
..-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...+.. ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344567788889999999999998876 433355666678888999999999998776532 2367778888999
Q ss_pred CCChHHHHHHHHHchhccccCCCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 038890 247 GGRAREALELFQEMQSSSVEEMVKP--DKITIASVLSACAYLGAIDHGKWVHGYLRRSG 303 (569)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 303 (569)
.|++++|+..|++.. .....| ..........++.+.|+.++|...|+++....
T Consensus 184 LG~~~eAl~~l~~a~----~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 184 LALFTEAERRLTEAN----DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TTCHHHHHHHHHHHH----TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHh----cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999886 333324 34456667777888999999999999988874
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-06 Score=67.73 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=89.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
.+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888899999999999999999988 3334 678889999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCC
Q 038890 486 YAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~~g 506 (569)
|.+.|++++|...+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999987753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.6e-06 Score=67.75 Aligned_cols=113 Identities=9% Similarity=-0.155 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALL 449 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 449 (569)
.+...+..+...+...|+++.|...|+...... +.+...|..+..++...|++++|+..+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 356677777888888888888888888887544 455778888888888888888888888887 3334 567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC-----ChhHHHHHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPL-----NHAFYVNLCDMY 486 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 486 (569)
.++...|++++|...++++.+..|. +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887766 455555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.3e-06 Score=66.84 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWG 446 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 446 (569)
+...+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4456666777777788888888888777742 344 567777888888888888888888877 3334 567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
.+..++...|++++|...++++.+..|.+..++..+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888999999999999999999999998887777665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-06 Score=67.88 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhHHHHHHHHH
Q 038890 415 CMIDILSRAGLFSEAERLIRSM-PMEPD-V---FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN---HAFYVNLCDMY 486 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 486 (569)
.+...+...|++++|...|++. ...|+ . ..+..+..++...|++++|...++++.+..|.+ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666655 21222 2 355566666667777777777777777777666 55566777777
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 038890 487 AKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~ 505 (569)
.+.|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=9.2e-06 Score=64.44 Aligned_cols=110 Identities=4% Similarity=-0.064 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM----EPD----VFVW 445 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 445 (569)
..+..+...+...|+++.|...|+...... +.+...+..+..++...|++++|...+++. .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345555566666667777777666666433 345566666667777777777777776665 11 122 5567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 446 GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 446 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
..+...+...|++++|.+.++++.+..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7777777888888888888888888777 4555555554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.32 E-value=6.4e-06 Score=78.96 Aligned_cols=90 Identities=11% Similarity=0.003 Sum_probs=81.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++.++.|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578889999999999999999999998 6566 5778999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHH
Q 038890 487 AKAGRFDDVKKT 498 (569)
Q Consensus 487 ~~~g~~~~A~~~ 498 (569)
.+.++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999988887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=66.90 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------hhHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PM-EPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN-------HAFYV 480 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 480 (569)
...+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999988 33 3467888999999999999999999999999987766 78899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 481 NLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 481 ~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.++.+|.+.|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00014 Score=67.51 Aligned_cols=192 Identities=8% Similarity=-0.044 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC--ChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC-hhHHHHHH
Q 038890 289 IDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG--CVERAYGVFKEMPK---KDTLAWTAMISVFALNGY-GKEAFDTF 362 (569)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 362 (569)
++++..+++.+.... +-+..+++.-.-++...| .+++++.+++.+.+ .|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666654 445556655555555555 36677777666653 355566666666666666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHc-----
Q 038890 363 REMEAEGVRPNHVTFVGLLSACAHS--------------GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRA----- 423 (569)
Q Consensus 363 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 423 (569)
+++.+..+. |...|+.....+... +.++++++.+....... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 777765322 444444443333322 34566666666666433 44556665554444443
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 424 ------GLFSEAERLIRSM-PMEPDV-FVWGALLGG---CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 424 ------g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
+.++++++.++++ ...||. .++..++.. ....|..++....+.++++++|.....|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3456666666666 444443 222222111 113455566667777777777766665555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.4e-06 Score=62.94 Aligned_cols=101 Identities=11% Similarity=-0.067 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP---DVFVWGALL 449 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~ 449 (569)
...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|+..+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3456667777888888888888888887543 456777888888888999999999888887 3334 477888888
Q ss_pred HHHHhc-CCHHHHHHHHHHHhhcCCCCh
Q 038890 450 GGCQMH-GNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 450 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 476 (569)
..+... |++++|.+.++++.+..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 889999 999999999999999888754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00023 Score=66.02 Aligned_cols=180 Identities=9% Similarity=0.006 Sum_probs=134.4
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 038890 324 VERAYGVFKEMPK---KDTLAWTAMISVFALNG--YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL-VEKGRWCF 397 (569)
Q Consensus 324 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 397 (569)
+++++.+++.+.. .+..+|+.-...+...| .+++++..++++.+...+ |...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5667777776653 47778888877787877 489999999999986433 66777777777777787 68999999
Q ss_pred HHhHHhcCCCCCHhHHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 038890 398 VMMRHVYLVEPHVYHYACMIDILSRA--------------GLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMH------ 455 (569)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 455 (569)
+.+.+.+ +-|...|+.....+.+. +.++++++.++.. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9999665 56778888777777665 4578899888887 3445 677777665555554
Q ss_pred -----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHH---HHcCChHHHHHHHHHHHHCC
Q 038890 456 -----GNVELGEKVAQYLIDLDPLNHAFYVNLCDMY---AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 456 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g 506 (569)
+.++++++.++++.+..|++...+..++... ...|..+++..++.++.+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999999876655554332 24678889999999997643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-05 Score=63.11 Aligned_cols=103 Identities=15% Similarity=0.021 Sum_probs=75.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV---YHYACMIDILSRAGLFSEAERLIRSM-PMEPD----VFVWGALLG 450 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 450 (569)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|+..|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556667788888888888777543 2223 46677778888888888888888877 33333 566777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
++...|++++|...++++.+..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 888999999999999999998888776555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.6e-06 Score=84.88 Aligned_cols=118 Identities=7% Similarity=-0.009 Sum_probs=96.9
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038890 381 LSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNV 458 (569)
Q Consensus 381 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 458 (569)
...+...|++++|...+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344567889999999999888654 456788899999999999999999999888 4455 577889999999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHH--HHHcCChHHHHHHHH
Q 038890 459 ELGEKVAQYLIDLDPLNHAFYVNLCDM--YAKAGRFDDVKKTRN 500 (569)
Q Consensus 459 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 500 (569)
++|++.++++.+..|.+..++..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998888888888 888899999999988
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-06 Score=65.73 Aligned_cols=98 Identities=9% Similarity=-0.056 Sum_probs=69.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566777788888888888877544 446777778888888888888888888877 4444 56677778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCh
Q 038890 455 HGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
.|++++|+..++++++.+|.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888877653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-05 Score=80.12 Aligned_cols=96 Identities=8% Similarity=0.038 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 487 (569)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999988 4344 67889999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHH-HHHHHHHC
Q 038890 488 KAGRFDDVKK-TRNLMKER 505 (569)
Q Consensus 488 ~~g~~~~A~~-~~~~m~~~ 505 (569)
+.|+++++.+ .+++|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998875 56665433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=76.28 Aligned_cols=131 Identities=8% Similarity=-0.071 Sum_probs=104.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--------------HVTFVGLLSACAHSGLVEKGRWCFVMMRHV 403 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 403 (569)
+...|..+...+...|++++|+..|++..+...... ...+..+..++.+.|++++|+..++...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677778888888899999988888877432211 478888899999999999999999999865
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 038890 404 YLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG-EKVAQYLID 470 (569)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 470 (569)
. +.+...|..+..+|...|++++|+..|+++ ...| +...+..+..++...|+.+++ ...++++.+
T Consensus 226 ~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 557888999999999999999999999988 4445 567888888889999999888 445665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-06 Score=74.87 Aligned_cols=120 Identities=8% Similarity=-0.079 Sum_probs=88.7
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C----------------HHHHH
Q 038890 385 AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-D----------------VFVWG 446 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 446 (569)
...|+++.+.+.|+...... ......+..+...+...|++++|+..|++. ...| + ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34455555555554333211 123455667777888888888888888876 2222 1 26888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+..++...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 889999999999999999999999999999999999999999999999999999987753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.4e-06 Score=65.00 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM----EPD----VFVWG 446 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 446 (569)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34445555666666666666666655432 334555666666666666666666666555 11 111 13556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
.+..++...|++++|++.|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6667777778888888888887776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-06 Score=69.33 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 442 VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567777777888888888888888888888888888888888888888888888888887664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=68.38 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 038890 423 AGLFSEAERLIRSM-PM---EP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 423 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 497 (569)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++..|.++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666666 33 23 344666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHC
Q 038890 498 TRNLMKER 505 (569)
Q Consensus 498 ~~~~m~~~ 505 (569)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=74.11 Aligned_cols=111 Identities=7% Similarity=-0.176 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038890 373 NHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLG 450 (569)
Q Consensus 373 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 450 (569)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677778888889999999999999888544 447788888999999999999999999887 5555 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
++...|++++|...++++.+.+|.++..+...++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 89999999999999999998887765444433333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=8e-06 Score=67.66 Aligned_cols=129 Identities=12% Similarity=-0.017 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM----PMEPD----VF 443 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 443 (569)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555666666666666555432110011 135666677777777777777777665 11111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 444 VWGALLGGCQMHGNVELGEKVAQYLIDLDP------LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 444 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
++..+...+...|++++|.+.++++.+..+ .....+..++..|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777778888888888888888876421 1245678889999999999999999988764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.2e-06 Score=67.66 Aligned_cols=78 Identities=14% Similarity=0.025 Sum_probs=64.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-hHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH-AFYVNLCDM 485 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 485 (569)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.+++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999988 4445 677899999999999999999999999999999988 444444433
Q ss_pred H
Q 038890 486 Y 486 (569)
Q Consensus 486 ~ 486 (569)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-05 Score=75.97 Aligned_cols=162 Identities=4% Similarity=-0.177 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCC-CHhH
Q 038890 342 WTAMISVFALNGYGKEAFDTFREMEAEG-VRPNHV----TFVGLLSACAHSGLVEKGRWCFVMMRHVY---LVEP-HVYH 412 (569)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 412 (569)
+..++..|...|++++|.+.+..+...- ..++.. ..+.+...+...|+++.+..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555666666666666665544310 111111 12222233344566777766666554211 1111 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC----hh
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD---PLN----HA 477 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 477 (569)
+..+...|...|++++|..++++. ..++ ...++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777777777777777665 1122 23466677777777888888887777776532 221 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 478 FYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 478 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666666777777877777666553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-05 Score=76.05 Aligned_cols=124 Identities=12% Similarity=-0.002 Sum_probs=99.9
Q ss_pred HHHccCCHHHHHHHHHHhHHhcC--CCC----CHhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYL--VEP----HVYHYACMIDILSRAGLFSEAERLIRSM---------PMEPDV-FVWG 446 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 446 (569)
.+...|++++|+.++++..+... +.+ ...+++.|..+|...|++++|+.++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999998887764332 122 2467899999999999999999998876 345554 5899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 447 ALLGGCQMHGNVELGEKVAQYLID-----LDPLNHAF---YVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 447 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.|...|..+|++++|+.+++++.+ .+|++|.+ ...+..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 56777655 4578888999999999999999997653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-05 Score=77.25 Aligned_cols=115 Identities=8% Similarity=-0.055 Sum_probs=49.0
Q ss_pred HHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKG 393 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 393 (569)
.+.+.|++++|.+.|++..+ .+...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555554332 234444555555555555555555555554431 11233444444445555555555
Q ss_pred HHHHHHhHHhcCCCCCHhHHHHHHHH--HHHcCCHHHHHHHHH
Q 038890 394 RWCFVMMRHVYLVEPHVYHYACMIDI--LSRAGLFSEAERLIR 434 (569)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 434 (569)
...|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544322 1122233333333 444445555554444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00013 Score=73.93 Aligned_cols=168 Identities=9% Similarity=-0.064 Sum_probs=130.5
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--
Q 038890 324 VERAYGVFKEMPK---KDTLAWTAMISVFALNGY----------GKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSG-- 388 (569)
Q Consensus 324 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 388 (569)
.++|++.++.+.. .+..+|+.-..++...|+ +++++..++.+.+...+ +...|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3455666665543 234556655555555555 78899999998876433 5677887777788888
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG-LFSEAERLIRSM-PMEP-DVFVWGALLGGCQMH---------- 455 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 455 (569)
++++++..++++.+.. +-+..+|+....++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999999765 567888988888888888 899999999988 5555 677888887776663
Q ss_pred ----CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 038890 456 ----GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDD 494 (569)
Q Consensus 456 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 494 (569)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888555
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-05 Score=76.63 Aligned_cols=147 Identities=9% Similarity=-0.066 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
...+..+...+...|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666667777778888888888877663 343321 22333333332221 1 136788888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH-HHcCChHHH
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY-AKAGRFDDV 495 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 495 (569)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.++.|.+..++..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 4444 6778899999999999999999999999999999988888888773 445677888
Q ss_pred HHHHHHHHHC
Q 038890 496 KKTRNLMKER 505 (569)
Q Consensus 496 ~~~~~~m~~~ 505 (569)
..+|++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.4e-06 Score=64.29 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHhHHhcC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 038890 387 SGLVEKGRWCFVMMRHVYL-VEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
.|++++|+..|++..+... -+.+...+..+..+|...|++++|+..|++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666777777777663210 0223466777777888888888888888777 3334 56677778888888888888888
Q ss_pred HHHHHhhcCCCChhHH
Q 038890 464 VAQYLIDLDPLNHAFY 479 (569)
Q Consensus 464 ~~~~~~~~~p~~~~~~ 479 (569)
.++++.+..|.++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888876543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-05 Score=64.30 Aligned_cols=132 Identities=10% Similarity=-0.016 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----Hh
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVR-PN----HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----VY 411 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 411 (569)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665432100 11 135666667777778888887777776542211111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-------PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
.+..+..++...|++++|...+++. +..+ ...++..+...+...|++++|.+.++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777888888888888877766 1111 13466777788888999999999988887643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=9.8e-05 Score=72.62 Aligned_cols=205 Identities=8% Similarity=-0.100 Sum_probs=134.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH
Q 038890 347 SVFALNGYGKEAFDTFREMEAEGVRPN----------------HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV 410 (569)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 410 (569)
..+...|++++|++.|..+.+...... ...+..+...|...|++++|...+..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888776432211 1246778899999999999999999887544322332
Q ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------
Q 038890 411 ----YHYACMIDILSRAGLFSEAERLIRSM-------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLD------ 472 (569)
Q Consensus 411 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 472 (569)
.+.+.+...+...|++++|..+++.. +..+. ..++..+...+...|++++|..+++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23334444555678999999888776 33333 4578889999999999999999999987631
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHh
Q 038890 473 PLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKN 552 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (569)
+....++..++..|...|++++|..++++..........|......+. .....-+...+...++...+.+..+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD---LMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH---HHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 233567889999999999999999999988543211100110000000 00001123445677777777666665555
Q ss_pred CC
Q 038890 553 GG 554 (569)
Q Consensus 553 ~g 554 (569)
.+
T Consensus 249 ~~ 250 (434)
T 4b4t_Q 249 LT 250 (434)
T ss_dssp TT
T ss_pred hh
Confidence 54
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4.5e-05 Score=55.94 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=65.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
+...+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777788888888888888888877 3333 5677888888888999999999999999999999888888888887
Q ss_pred HHcC
Q 038890 487 AKAG 490 (569)
Q Consensus 487 ~~~g 490 (569)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.1e-05 Score=57.58 Aligned_cols=65 Identities=26% Similarity=0.241 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|.+.|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788899999999999999999999999999999999999999999999999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=74.27 Aligned_cols=152 Identities=9% Similarity=-0.070 Sum_probs=83.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038890 308 VVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHS 387 (569)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 387 (569)
...+..+...+.+.|++++|...|++....++... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788899999999999999988654222111 1122233333332221 23677888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 038890 388 GLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGG-CQMHGNVELGEKV 464 (569)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a~~~ 464 (569)
|++++|+..++...+.. +.+...|..+..+|...|++++|+..|++. ...|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998644 457788999999999999999999999998 666643 455555544 2345667888899
Q ss_pred HHHHhhcCCCCh
Q 038890 465 AQYLIDLDPLNH 476 (569)
Q Consensus 465 ~~~~~~~~p~~~ 476 (569)
|+++.+..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999998887754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=60.68 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=74.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------hhHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN------HAFYV 480 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 480 (569)
+...+..+...+...|++++|+..|++. ...| +...+..+..++...|++++|++.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888887 3334 67788888999999999999999999999999988 77778
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 038890 481 NLCDMYAKAGRFDDVKKTRN 500 (569)
Q Consensus 481 ~l~~~~~~~g~~~~A~~~~~ 500 (569)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887776665544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.4e-05 Score=62.56 Aligned_cols=103 Identities=9% Similarity=-0.059 Sum_probs=71.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCC----------CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-------CCC
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLV----------EPHVYHYACMIDILSRAGLFSEAERLIRSM-PM-------EPD 441 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~ 441 (569)
....+...|++++|+..|++..+...- +.+...|..+..++.+.|++++|+..+++. .+ .|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 334444555555555555555432210 001237788888888888888888877776 44 775
Q ss_pred H-HHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHH
Q 038890 442 V-FVW----GALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNL 482 (569)
Q Consensus 442 ~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 482 (569)
. ..| .....++...|++++|+..|++++++.|.+...+..+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4 577 8899999999999999999999999998876554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.6e-05 Score=57.44 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 428 EAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 428 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+|+..|++. ...| +...+..+...+...|++++|+..++++.+.+|.+..++..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355556655 4444 56788888888889999999999999999999998889999999999999999999999888664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.86 E-value=6.5e-05 Score=71.93 Aligned_cols=66 Identities=8% Similarity=-0.028 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+..+|..+..++.+.|++++|+..++++++.+|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456888899999999999999999999999999999999999999999999999999999987753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00023 Score=70.47 Aligned_cols=123 Identities=8% Similarity=-0.081 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 038890 339 TLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN--------------HVTFVGLLSACAHSGLVEKGRWCFVMMRHVY 404 (569)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 404 (569)
...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++.+.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677777888888888888888888876322111 4778888899999999999999999998654
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 038890 405 LVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
+.+...|..+..+|...|++++|+..|+++ .+.|+ ...+..+..++...++.+++.+
T Consensus 348 --p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888999999999999999999999998 66664 4577888888888888877664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.9e-05 Score=63.87 Aligned_cols=85 Identities=13% Similarity=0.061 Sum_probs=63.0
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 038890 422 RAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGN----------VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA 489 (569)
Q Consensus 422 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 489 (569)
+.+.+++|+..++.. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555555 2233 44555555555555444 57999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHHCC
Q 038890 490 G-----------RFDDVKKTRNLMKERG 506 (569)
Q Consensus 490 g-----------~~~~A~~~~~~m~~~g 506 (569)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998854
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00077 Score=68.29 Aligned_cols=151 Identities=9% Similarity=-0.037 Sum_probs=123.8
Q ss_pred HcC-ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC----------HHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 351 LNG-YGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAHSGL----------VEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 351 ~~g-~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
..| ..++|++.++++... .|+ ...|+.--.++...|+ +++++..++.+.+.. +.+..+|..-..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344 446889999999985 444 4556665555656666 899999999999665 667889999999
Q ss_pred HHHHcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHc----
Q 038890 419 ILSRAG--LFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG-NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKA---- 489 (569)
Q Consensus 419 ~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 489 (569)
++.+.| +++++++.++++ ...| |...|+.-...+...| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 999999 779999999999 4444 7889998888888999 899999999999999999999999999988874
Q ss_pred ----------CChHHHHHHHHHHHHC
Q 038890 490 ----------GRFDDVKKTRNLMKER 505 (569)
Q Consensus 490 ----------g~~~~A~~~~~~m~~~ 505 (569)
++++++.+++++....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHhh
Confidence 5678999988887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00027 Score=69.81 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=84.7
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hHHH
Q 038890 419 ILSRAGLFSEAERLIRSM---------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID-----LDPLNH---AFYV 480 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~ 480 (569)
.+...|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+|++| ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988776 23343 35899999999999999999999999886 456655 4588
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 038890 481 NLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMK 551 (569)
Q Consensus 481 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (569)
.|+.+|...|++++|..++++..+--.. .-...||...++..++.+...++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988542111 012346666666666666554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00031 Score=51.57 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 439 EPDVFVWGALLGGCQMHGN---VELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
++|...+..+..++...++ .++|..+++++.+.+|.++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577788888888765555 699999999999999999999999999999999999999999999886543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=5.5e-05 Score=61.17 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038890 387 SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL----------FSEAERLIRSM-PMEP-DVFVWGALLGGCQM 454 (569)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 454 (569)
.+.+++|...++...+.. +.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345566666666666443 4456666666666666554 35777777777 5555 45677777777776
Q ss_pred c-----------CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038890 455 H-----------GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 455 ~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 507 (569)
. |++++|++.|+++++++|++......+- ..++|.++.-.+...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSSS
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccccc
Confidence 6 4899999999999999999865444332 33455565555544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00018 Score=54.99 Aligned_cols=67 Identities=13% Similarity=-0.011 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 440 PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
++...+..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788889999999999999999999999999999999999999999999999999999998643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00071 Score=54.21 Aligned_cols=90 Identities=7% Similarity=-0.212 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH---
Q 038890 416 MIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK--- 488 (569)
Q Consensus 416 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 488 (569)
|...|...+.+++|.++|++.-..-+...+..|...|.. .+++++|.+.|+++.+. .++.++..|+..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333444444444444444444111244444445555544 55666666666666554 345566666666666
Q ss_pred -cCChHHHHHHHHHHHHCCC
Q 038890 489 -AGRFDDVKKTRNLMKERGI 507 (569)
Q Consensus 489 -~g~~~~A~~~~~~m~~~g~ 507 (569)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6667777777766666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00062 Score=66.21 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=88.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hH
Q 038890 417 IDILSRAGLFSEAERLIRSM---------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLID-----LDPLNH---AF 478 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~ 478 (569)
+..+.+.|++++|+.++++. ...|+ ..+++.+..+|...|++++|+.+++++++ .+|.+| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999988766 11232 35889999999999999999999999886 445554 45
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 038890 479 YVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMK 551 (569)
Q Consensus 479 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (569)
++.|+..|...|++++|..++++..+--. ..-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998864211 1112358888888888888777765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00044 Score=53.32 Aligned_cols=80 Identities=11% Similarity=-0.010 Sum_probs=53.5
Q ss_pred HHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 393 GRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 393 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
+...|+...+.. +.+...+..+..+|...|++++|+..|++. ...| +...|..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555322 345666777777777777777777777766 3333 456777777777788888888888888777
Q ss_pred cCCC
Q 038890 471 LDPL 474 (569)
Q Consensus 471 ~~p~ 474 (569)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.56 E-value=1.5e-06 Score=82.07 Aligned_cols=369 Identities=9% Similarity=0.044 Sum_probs=224.9
Q ss_pred CcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhH
Q 038890 95 DLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFV 174 (569)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 174 (569)
.+..|+.+..+.+..+... +|++.|-+. -|+..|..++.++.+.|.++.-.+++....+..- ++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~------eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVK------EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCT------TTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTT
T ss_pred CccHHHHHHHHHHccCchH------HHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--cccc
Confidence 5678889999999998888 776655322 3777899999999999999999999887776543 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------
Q 038890 175 QNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKK----------------------- 231 (569)
Q Consensus 175 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 231 (569)
=+.|+-+|++.|++.+..+++ ..||......+.+-|...|.++.|.-+|..+..
T Consensus 119 DteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999976644332 227776677788889999999999888877642
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchh
Q 038890 232 -RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVI 310 (569)
Q Consensus 232 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (569)
.++.||..+..+|...+.+.-|.-.--.+. +.|| ....++..|...|.+++.+.+++...... .....+
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-------vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGm 265 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 265 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc-------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHH
Confidence 366789999999999988876654433333 1111 22334556777788888777777665322 456677
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----C-------ChhHHHHHHHHHHHcCChhHHHHHHH-------------HHH
Q 038890 311 GTALVDMYGKCGCVERAYGVFKEMPK----K-------DTLAWTAMISVFALNGYGKEAFDTFR-------------EME 366 (569)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~-------------~m~ 366 (569)
|+.|.-.|++- ++++..+.++..-. | ....|.-++-.|..-.+++.|....- +..
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii 344 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 344 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTG
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHH
Confidence 78777777765 56666665554432 1 44567777777877777776654321 000
Q ss_pred HCCCCCCHHHH---------------HHHHHHHHccCCHHHHHHHHHHhHHhcCCC---------CCHhHHHHHHHHHHH
Q 038890 367 AEGVRPNHVTF---------------VGLLSACAHSGLVEKGRWCFVMMRHVYLVE---------PHVYHYACMIDILSR 422 (569)
Q Consensus 367 ~~~~~p~~~~~---------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~ 422 (569)
.. ..+...| +-|+.++...=|..++.++|++.-.-.-++ .+..+=.++-+.|..
T Consensus 345 ~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 345 TK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp GG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 00 1122222 334444444444445555554322111011 123333456667777
Q ss_pred cCCHHHHHHHHHhC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------Hhh--cCCCChhHHHHH
Q 038890 423 AGLFSEAERLIRSM------------PMEPDVFVWGALLGGCQMHGNVELGEKVAQY------LID--LDPLNHAFYVNL 482 (569)
Q Consensus 423 ~g~~~~A~~~~~~~------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~--~~p~~~~~~~~l 482 (569)
..+++.-..-.+.. ...+-...-..-...|.+.+++++++.+.++ +.+ ....++.....|
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeL 502 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEEL 502 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHH
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHH
Confidence 77776655544333 1122222233334456677777777654432 222 123345555666
Q ss_pred HHHHHHcCChH
Q 038890 483 CDMYAKAGRFD 493 (569)
Q Consensus 483 ~~~~~~~g~~~ 493 (569)
++-+...|+.+
T Consensus 503 L~yFv~~g~~E 513 (624)
T 3lvg_A 503 LQWFLQEEKRE 513 (624)
T ss_dssp HHHHHHHCSTH
T ss_pred HHHHHHcCchH
Confidence 66666666544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00041 Score=50.58 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+...+..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345778888899999999999999999999999999999999999999999999999999987753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00039 Score=67.54 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hHHHHHHH
Q 038890 423 AGLFSEAERLIRSM---------PMEPDV-FVWGALLGGCQMHGNVELGEKVAQYLID-----LDPLNH---AFYVNLCD 484 (569)
Q Consensus 423 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 484 (569)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ .+|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888877765 233443 5889999999999999999999999886 455555 45889999
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 038890 485 MYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~ 504 (569)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998854
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0013 Score=52.62 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCc
Q 038890 439 EPDVFVWGALLGGCQMHG---NVELGEKVAQYLIDLD-P-LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPG 513 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 513 (569)
.++..+...+..++.+.+ ++++++.+++...+.+ | .+...+..|+-+|.+.|++++|.++++.+.+. .|
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP---- 102 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EP---- 102 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CT----
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC----
Confidence 356677777777777766 5557777777777766 5 34666777777778888888888888777662 22
Q ss_pred eeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcc
Q 038890 514 CSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFG 556 (569)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (569)
....+..+.+.+.+.+++.|.+
T Consensus 103 ---------------------~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 103 ---------------------QNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHTTCC
T ss_pred ---------------------CCHHHHHHHHHHHHHHHHhhHH
Confidence 2345566666666777777654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0034 Score=50.17 Aligned_cols=113 Identities=10% Similarity=-0.191 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHH
Q 038890 353 GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSE 428 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 428 (569)
+++++|+.+|++..+.| .|+.. +...|...+.+++|..+|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999998887 33444 666777778888999999998852 467788888888988 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 474 (569)
|..+|++.-..-+...+..|...|.. .++.++|...++++.+.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999988223467788888888888 88999999999999987643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0088 Score=45.74 Aligned_cols=141 Identities=10% Similarity=0.055 Sum_probs=103.8
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
+...|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+.+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34567777888887777653 245566666666666667777777777666544321 3455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
....+-.++ .+.......+..+..+|.-++-.+++..+....++++.....++.+|.+.|+..+|.+++.+..++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 245556777888889999999999999988888888999999999999999999999999999999986
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0008 Score=50.33 Aligned_cols=66 Identities=11% Similarity=-0.027 Sum_probs=47.7
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
.+...+..+..+|...|++++|+..|++. ...| +...|..+..++...|++++|++.+++++++.|
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 35566777777777788888888877776 3333 455777777788888888888888888777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=48.63 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=29.4
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 418 DILSRAGLFSEAERLIRSM-PMEP-DVF-VWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
..+.+.|++++|+..|++. ...| +.. .+..+..++...|++++|++.|+++.+.+|.+..++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444455555555555544 2222 333 444444455555555555555555555555544433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0033 Score=60.96 Aligned_cols=95 Identities=12% Similarity=-0.067 Sum_probs=73.6
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 038890 386 HSGLVEKGRWCFVMMRHVYL--VEPH----VYHYACMIDILSRAGLFSEAERLIRSM---------PMEPDV-FVWGALL 449 (569)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 449 (569)
..|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788888888887664321 2222 367889999999999999999998877 345654 4799999
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-----cCCCChhHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLID-----LDPLNHAFYV 480 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 480 (569)
..|..+|++++|+.+++++.+ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999886 5688775543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0061 Score=59.21 Aligned_cols=101 Identities=11% Similarity=-0.101 Sum_probs=78.2
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HH
Q 038890 381 LSACAHSGLVEKGRWCFVMMRHVYL--VEPH----VYHYACMIDILSRAGLFSEAERLIRSM---------PMEPDV-FV 444 (569)
Q Consensus 381 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 444 (569)
+..+.+.|++++|...+++..+... +.|+ ..+++.++.+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456677899999999988764321 1222 467889999999999999999998877 344544 57
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChhHHHH
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLID-----LDPLNHAFYVN 481 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 481 (569)
++.|...|..+|++++|+.+++++.+ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999886 57887765443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0041 Score=46.02 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=28.6
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 382 SACAHSGLVEKGRWCFVMMRHVYLVEPHVY-HYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
..+...|++++|...|+.+.+.. +.+.. .+..+..+|...|++++|+..|++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455556666666665555332 23344 5555555555566666666555555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.021 Score=53.20 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..+|..+...+...|++++|...++++.+++| +...|..++..+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444555444444444555555555555555553 234445555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.011 Score=44.38 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=57.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-----P----MEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
+..-+..+...+.+.|++..|...|+.. + -.+...++..+..++.+.|+++.|...++++.+..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445556777777777777777777665 1 123456888899999999999999999999999999998776
Q ss_pred HHHH
Q 038890 480 VNLC 483 (569)
Q Consensus 480 ~~l~ 483 (569)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.2 Score=53.37 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=101.7
Q ss_pred HHHccCCcHHHHH-HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 038890 146 ECTKRLDGLVGAS-VYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALD 224 (569)
Q Consensus 146 ~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (569)
.....++++.|.+ ++.. ++ +......++..+.+.|..+.|.++.+. . ..-.......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHH
Confidence 3445678887766 4411 11 122336777888889999998877532 1 122344567899999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 038890 225 LFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL 304 (569)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 304 (569)
+.+.+. +...|..+...+.+.|+++.|.+.|..+. . |..+...+...++.+....+-+.....|
T Consensus 674 ~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~----d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH----D---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT----C---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc----C---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 987774 55789999999999999999999999885 1 3344555555777776666655555544
Q ss_pred CCcchhHHHHHHHHHhcCChHHHHHHHhh
Q 038890 305 DCDVVIGTALVDMYGKCGCVERAYGVFKE 333 (569)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 333 (569)
-++....+|.+.|++++|.++|.+
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHH
Confidence 123444556667777777766543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.023 Score=52.91 Aligned_cols=139 Identities=12% Similarity=-0.019 Sum_probs=97.6
Q ss_pred CCChhHHHHHHHHHH--HcC---ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc---cC-CH-HHHH---HHHHHhH
Q 038890 336 KKDTLAWTAMISVFA--LNG---YGKEAFDTFREMEAEGVRPN-HVTFVGLLSACAH---SG-LV-EKGR---WCFVMMR 401 (569)
Q Consensus 336 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~~-~~-~~a~---~~~~~~~ 401 (569)
..+...|...+.+.. ..+ +..+|+.+|++..+. .|+ ...+..+..++.- .+ .. .... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 347778888876643 333 357899999999984 565 3455555555542 11 11 1111 1222211
Q ss_pred HhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 402 HVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
....-+.++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11222567788888888888889999999999999 5558888888888999999999999999999999999865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=43.09 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 407 EPHVYHYACMIDILSRAGL---FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
+.++..+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|+..|+++.+.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567777777777765554 68888888887 4455 56777778888889999999999999999988884
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.095 Score=55.90 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=98.9
Q ss_pred HHHHhCCChHHHHH-HHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHh
Q 038890 242 TGFVQGGRAREALE-LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGK 320 (569)
Q Consensus 242 ~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (569)
......+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+.- ..-......
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i----------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~ 664 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV----------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALK 664 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC----------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcC----------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhh
Confidence 34456788888876 44221 21223366777778888888877665321 111344567
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 321 CGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
.|+++.|.++.+.+. +...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++-+..
T Consensus 665 ~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 665 VGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 899999999987764 567899999999999999999999988653 334444455566766655554444
Q ss_pred HHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 401 RHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
.. .| -++....+|.+.|++++|++++.++
T Consensus 734 ~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 42 21 1233444556667777776666655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.022 Score=43.69 Aligned_cols=65 Identities=6% Similarity=-0.132 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 440 PDVFVWGALLGGCQMHGNVEL---GEKVAQYLIDLD-P-LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 440 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
|+..+-..+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555555555555554443 666666655554 3 2344455566666666666666666666655
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=47.00 Aligned_cols=89 Identities=15% Similarity=-0.069 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAG---LFSEAERLIRSM-PME-P--DVFVWGALLGGCQMHGNVELGE 462 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 462 (569)
...+.+.|.+.... + +++..+...+..++++.+ +.++++.+|++. ... | +...+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555554432 2 366777777777777777 555777777776 223 4 3456677788889999999999
Q ss_pred HHHHHHhhcCCCChhHHH
Q 038890 463 KVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 463 ~~~~~~~~~~p~~~~~~~ 480 (569)
+.++.+.+.+|++..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999999876544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.014 Score=52.09 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=69.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHc-CChHH
Q 038890 426 FSEAERLIRSM-PMEPD---VFVWGALLGGCQM-----HGNVELGEKVAQYLIDLDPLN-HAFYVNLCDMYAKA-GRFDD 494 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 494 (569)
...|...+++. .+.|+ ...|..+...|.. .|+.++|.+.|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666666 66676 4578888888888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHHCCCCC
Q 038890 495 VKKTRNLMKERGIRK 509 (569)
Q Consensus 495 A~~~~~~m~~~g~~~ 509 (569)
|.+++++......+.
T Consensus 259 a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 259 FDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999877763
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.15 Score=41.73 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=59.9
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 317 MYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566777776666554 3456677777777777777777777765432 23333344455666555444
Q ss_pred HHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038890 397 FVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPM 438 (569)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 438 (569)
-+.... .| -++....++.-.|+++++.++|.+.+.
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 443332 11 134445555566777777777776653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.2 Score=39.02 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCCCce
Q 038890 439 EPDVFVWGALLGGCQMHGNV---ELGEKVAQYLIDLDPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIRKEVPGC 514 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 514 (569)
.|+..+-..+..++.++.+. .+++.+++.+.+..|. .......|+-++.+.|++++|.++.+.+.+. .|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP----- 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ER----- 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CC-----
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CC-----
Confidence 56666666677777766644 4677777777776664 4455666777888888888888888887763 22
Q ss_pred eEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcc
Q 038890 515 SSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFG 556 (569)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (569)
....+.++-..+.+.|...|.+
T Consensus 109 --------------------~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 109 --------------------NNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHTTTT
T ss_pred --------------------CcHHHHHHHHHHHHHHHHhchh
Confidence 3346666666777777777754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.039 Score=41.24 Aligned_cols=65 Identities=9% Similarity=-0.145 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDL-------DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+..-+..+...+...|+++.|...++.+.+. ++....++..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 5556678889999999999999999999874 2345678999999999999999999999999773
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=1.6 Score=44.26 Aligned_cols=306 Identities=8% Similarity=-0.052 Sum_probs=143.2
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh-hHHHHHHHHHHhcCCHHHHHHH
Q 038890 148 TKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDV-VSWNAMIIGYLRSGDLDVALDL 225 (569)
Q Consensus 148 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~ 225 (569)
.+.|++..+..+...+....+. .-..|..+.... .....++...++.+-.. |-. ..-+..+..+.+.+++...+..
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~ 94 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAF 94 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 4567777776665544221111 112232222111 22356677777766554 211 2234456667778888888886
Q ss_pred HHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHH--HHHHHHHHHHhC
Q 038890 226 FRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDH--GKWVHGYLRRSG 303 (569)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~ 303 (569)
+.. ...+...--....+....|+..+|......+- ..| ...+..+..++..+.+.|.+.. ...=+..+...|
T Consensus 95 ~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW----~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~ 168 (618)
T 1qsa_A 95 SPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW----LTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (618)
T ss_dssp CCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH----SCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 665 32233333345566777888877777777764 222 2334455666666665553322 111111222211
Q ss_pred -----------CCCcch-hHHHHHHHHHhcCChHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038890 304 -----------LDCDVV-IGTALVDMYGKCGCVERAYGVFKEMPKKDTL---AWTAMISVFALNGYGKEAFDTFREMEAE 368 (569)
Q Consensus 304 -----------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (569)
++++.. ....++..+. +...+........ ++.. .+...+.-+.+ .+.+.|...|......
T Consensus 169 ~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~ 243 (618)
T 1qsa_A 169 NTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQA 243 (618)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhc
Confidence 111111 1111111111 1122222222211 1111 11111222222 3667777777776543
Q ss_pred CCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CH
Q 038890 369 GVRPNHVT----FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP--DV 442 (569)
Q Consensus 369 ~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~ 442 (569)
+ ..+... ...+.......+...++...+..... . ..+.....-.+....+.|+++.|...|+.|...+ ..
T Consensus 244 ~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 244 Q-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp T-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSH
T ss_pred c-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccH
Confidence 2 122221 22222233344424445555554332 1 2333333334444456688888888888873332 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLID 470 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 470 (569)
.-..=+..++...|+.++|..+|+.+.+
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3233345566677888888888877764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.74 E-value=2.5 Score=44.63 Aligned_cols=410 Identities=11% Similarity=0.032 Sum_probs=206.4
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCChhHHH
Q 038890 6 QMVSYSLLNSPAKVSPPNKESTKLILRNAIDECKNMRELKEIHTQIIKSPCLQTNDHHSLITRLLFFCALSVSGSLSYAT 85 (569)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~ 85 (569)
-+.+.+++..+. .+.+..+..++.+-++.+.+.++|..+... .+. .+...+.-.+.+. ++-.--.
T Consensus 218 Lr~l~~Iy~k~~-------~~dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~---l~ayQiAFdL~~~--~~Q~fL~ 282 (963)
T 4ady_A 218 LRKSFDFLMNMP-------NCDYLTLNKVVVNLNDAGLALQLFKKLKEE---NDE---GLSAQIAFDLVSS--ASQQLLE 282 (963)
T ss_dssp HHHHHHHHHHSS-------SCCHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCH---HHHHHHHHHHHHH--SCHHHHH
T ss_pred HHHHHHHHHhCC-------chhHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccH---HHHHHHHHHHhcc--cchHHHH
Confidence 344555555441 357778888888999999999999998752 244 4555555555554 3322222
Q ss_pred HHhhcCC-----------CCC---cccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-Cc--ccHHHHHHHHH
Q 038890 86 NVFSHIK-----------RSD---LYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DC--LTFPFLLKECT 148 (569)
Q Consensus 86 ~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~--~~~~~ll~~~~ 148 (569)
.+.+.+. -.+ ...|..++ .+.+..+ ..+++.+... +.+ +. .+-.++.+++.
T Consensus 283 ~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl~FL---~~~n~~d--------~~~l~~~K~~-ld~r~s~~~~A~~f~Naf~ 350 (963)
T 4ady_A 283 ILVTELTAQGYDPALLNILSGLPTCDYYNTFL---LNNKNID--------IGLLNKSKSS-LDGKFSLFHTAVSVANGFM 350 (963)
T ss_dssp HHHHHHHHTTCCHHHHHHTTSHHHHHHHHHHH---HHHCCCC--------HHHHHHHHHH-SCTTSHHHHHHHHHHHHHH
T ss_pred HHHHhccccchhHHHHHHhCCCChHHHHHHHH---Hhccccc--------hhhHHHHHhh-hcchhhHHHHHHHHHHHHH
Confidence 2211111 012 23333333 3333333 3344444321 222 11 13334556666
Q ss_pred ccCCcHHH-HHH-HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChh--HHHHHHHHHHhcCCHH
Q 038890 149 KRLDGLVG-ASV-YGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN----RDVV--SWNAMIIGYLRSGDLD 220 (569)
Q Consensus 149 ~~~~~~~a-~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~ 220 (569)
..|-.... ... .+++-+ . .+....-....-+....|+.++++.++..... .+.. .-..+.-+....|..+
T Consensus 351 naG~~~D~~l~~~~~Wl~k-~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~ 428 (963)
T 4ady_A 351 HAGTTDNSFIKANLPWLGK-A-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR 428 (963)
T ss_dssp TTTTCCCHHHHHCHHHHHH-C-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH
T ss_pred hCCCCcchhhhcchhhhhc-c-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH
Confidence 66533221 111 122222 1 11112222233356678899999999888765 1222 2233444556666666
Q ss_pred HHHHHHHhcCC-CC--------h--hHHHHHHHHHHhCCC-hHHHHHHHHHchhccccCCCCccHHHHH--HHHHHHHcc
Q 038890 221 VALDLFRRMKK-RN--------I--FSWNSIITGFVQGGR-AREALELFQEMQSSSVEEMVKPDKITIA--SVLSACAYL 286 (569)
Q Consensus 221 ~A~~~~~~~~~-~~--------~--~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~p~~~~~~--~ll~~~~~~ 286 (569)
++..++..... .+ . ..-.++.-+++-.|. -+++.+.+..+.. ... +...... .+...+...
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~---dd~--~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLY---NDS--ATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh---cCC--HHHHHHHHHHHhhhhccc
Confidence 77776665432 22 1 112233334444443 2456666666652 111 1111122 233345567
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC-CChh-HHH---HHHHHHHHcCChhHHHHH
Q 038890 287 GAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK-KDTL-AWT---AMISVFALNGYGKEAFDT 361 (569)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~ 361 (569)
|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.. .++. -|. ++..+|+..|+.....++
T Consensus 504 gn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~L 582 (963)
T 4ady_A 504 GKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRL 582 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88888888887776532 22222222333334466777777766666542 2332 232 334566778888777778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHhCCCCC
Q 038890 362 FREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF-SEAERLIRSMPMEP 440 (569)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p 440 (569)
+..+.... ..+......+.-++...|+.+.+.++++.+.+.. .|.+..-..+.-+....|.. .+|++++..+-..+
T Consensus 583 L~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 583 LHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 88887642 2233333333344555667666777777666322 34443333444444444443 67778888884455
Q ss_pred CHHHHHHHHHHHH
Q 038890 441 DVFVWGALLGGCQ 453 (569)
Q Consensus 441 ~~~~~~~l~~~~~ 453 (569)
|..+-...+.++.
T Consensus 660 d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 660 VDFVRQAAMIALS 672 (963)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6655444444433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0086 Score=57.12 Aligned_cols=239 Identities=11% Similarity=0.068 Sum_probs=163.3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 038890 64 SLITRLLFFCALSVSGSLSYATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLCTGISPDCLTFPFL 143 (569)
Q Consensus 64 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 143 (569)
.++..|..++... |.+.+|..-| ++..|+..|..+|.+..+.|.++ .-+..+...++.. -++..=+.|
T Consensus 55 ~VWs~LgkAqL~~--~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~e------dLv~yL~MaRk~~--ke~~IDteL 122 (624)
T 3lvg_A 55 AVWSQLAKAQLQK--GMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWE------ELVKYLQMARKKA--RESYVETEL 122 (624)
T ss_dssp CCSSSHHHHTTTS--SSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCT------THHHHHHTTSTTC--CSTTTTHHH
T ss_pred cHHHHHHHHHHcc--CchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHh--cccccHHHH
Confidence 6788899999888 8888887755 33467888999999999999999 8888887777653 455566788
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------------
Q 038890 144 LKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN----------------------- 200 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 200 (569)
+-+|++.+++.+..+.+ -.|+..-...+.+-|...|.++.|.-+|..+..
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876544443 235665566778888888888888888776642
Q ss_pred -CChhHHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHH
Q 038890 201 -RDVVSWNAMIIGYLRSGDLDVALDLFRR-MKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIAS 278 (569)
Q Consensus 201 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ 278 (569)
.++.||-.+-.+|...+.+.-|.-.--. +..++. ...++..|-..|.+++.+.+++.-.. --......|+-
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglg-----lErAHmGmFTE 268 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALG-----LERAHMGMFTE 268 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTT-----STTCCHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhC-----CCchhHHHHHH
Confidence 4778999999999999988776544222 222211 12345567788888888888887641 12456777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hCCC------CcchhHHHHHHHHHhcCChHHHHH
Q 038890 279 VLSACAYLGAIDHGKWVHGYLRR-SGLD------CDVVIGTALVDMYGKCGCVERAYG 329 (569)
Q Consensus 279 ll~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 329 (569)
|.-.|++-. +++..+.++..-. .+++ -....|..++-.|..-.++|.|..
T Consensus 269 LaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 269 LAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 777777653 3333333332211 2222 134567778888888888886654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.23 Score=44.29 Aligned_cols=120 Identities=8% Similarity=-0.023 Sum_probs=84.8
Q ss_pred CChhHHHHHhhcCCCCC--cccHHHHHHHH-hc--CCCCCCCCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHHc-
Q 038890 79 GSLSYATNVFSHIKRSD--LYTYNIMIRAN-AC--KSSETNDTHSGKCLKLYKQMLCTGISPD---CLTFPFLLKECTK- 149 (569)
Q Consensus 79 g~~~~A~~~~~~~~~~~--~~~~~~li~~~-~~--~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~- 149 (569)
|+...-.+.+......+ ...|..++.+- +. .|++..-.....|...+++.++ +.|+ ...|..+...|..
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 44444455555555433 35677776533 33 3666555556678888888888 5576 4467777777877
Q ss_pred ----cCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHhhcCC
Q 038890 150 ----RLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMAC-GFVTSARMLFDEMSN 200 (569)
Q Consensus 150 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 200 (569)
.|+.++|...|++.++.++.-+..++......++.. |+.+.+.+.+++...
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 499999999999999987643466777788888874 899999999988765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.13 Score=39.31 Aligned_cols=90 Identities=14% Similarity=-0.077 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 038890 389 LVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE---AERLIRSM-PME-P--DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a 461 (569)
....+.+-|...... | .++..+-..+..++++...... ++.++++. ... | .......|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334444555544422 2 3666676777777777776655 77777766 322 4 234566677789999999999
Q ss_pred HHHHHHHhhcCCCChhHHH
Q 038890 462 EKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 462 ~~~~~~~~~~~p~~~~~~~ 480 (569)
.+.++.+.+.+|.|..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999999876654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.057 Score=42.45 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
+|.++|.++|+.+++....-..+|...++.-.+.|+...|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55556666666655543333445555555555566666666666655554433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.58 Score=35.99 Aligned_cols=146 Identities=11% Similarity=-0.023 Sum_probs=92.9
Q ss_pred HHHHHHH--HHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhc
Q 038890 140 FPFLLKE--CTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN-RDVVSWNAMIIGYLRS 216 (569)
Q Consensus 140 ~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~ 216 (569)
...|+.+ ..-.|..++..++..+..+.. +..-+|=++--....-+-+-..++++.+-+ -|. ...
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C 74 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKC 74 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hhh
Confidence 3344443 445677777777777776653 233333333333344445555555555433 111 124
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 217 GDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 217 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
|+.......+-.+.. +.......+.....+|+-++-.+++..+. ...+|++...-.+..+|.+.|+..++..++
T Consensus 75 ~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l-----~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREIL-----KNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHh-----ccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 444555555544432 33455667788889999999999999863 245788888889999999999999999999
Q ss_pred HHHHHhCC
Q 038890 297 GYLRRSGL 304 (569)
Q Consensus 297 ~~~~~~~~ 304 (569)
.++-+.|+
T Consensus 149 ~~AC~kG~ 156 (172)
T 1wy6_A 149 IEACKKGE 156 (172)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 99988885
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.22 Score=38.35 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 439 EPDVFVWGALLGGCQMHGNV---ELGEKVAQYLIDLDPL-NHAFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 439 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
.|+..+-..+..++.+..+. .+++.+++.+.+.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555555555555555433 3566666666665553 344555666666677777777766666654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.67 E-value=1.5 Score=35.90 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHH
Q 038890 213 YLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHG 292 (569)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 292 (569)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHHHH
Confidence 33455555555555544 2445566666666666666666666666541 22333334445555555
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 293 KWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
..+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44444443333 12333344455566666666665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.98 Score=46.69 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
.-|...|+++-|+++.+++...-|.+..+|..|+.+|.+.|+|+.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34667899999999999999999999999999999999999999999999987
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.87 E-value=1.8 Score=34.13 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 424 GLFSEAERLIRSM---PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 424 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
++.++|.++|+.+ ..+- ...|.....--.++|+...|.+++.+++...|.....+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 5666666666666 1111 556666666667788888888888888888877665554444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.37 Score=45.96 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-----HCCCCCC
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK-----ERGIRKE 510 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~ 510 (569)
...++..+...|+++++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+... +.|+.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34566677788999999999999999999998899999999999999999999988874 4588876
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.56 E-value=5.3 Score=33.29 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDVFVWGALLGGCQ--MHGNVELGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNL 501 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 501 (569)
+++...|... ..+.|+.-...-+.-.. ..++...+.++|..|.. ++......|...+..+...|++.+|.++|+.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444 34456553333333222 24557788899998876 5566788899999999999999999999999
Q ss_pred HHHCCCCCCCCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHhCCcccCcc
Q 038890 502 MKERGIRKEVPGCSSVEVDGVVHEFSMKGSPKVVKEELVLILNGLSKIMKNGGFGQYIR 560 (569)
Q Consensus 502 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 560 (569)
-.+.+-+|- ++..+...+....|.+.+.+.|..
T Consensus 141 GI~~~A~P~--------------------------~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 141 GAENNCRPY--------------------------NRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp HHHTTCBSH--------------------------HHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHcCCccH--------------------------HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 888887763 355666666677788877754444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.62 E-value=5 Score=44.42 Aligned_cols=163 Identities=6% Similarity=0.016 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC
Q 038890 208 AMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG 287 (569)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~ 287 (569)
.++..+...+..+.+.++..-... +...-..+..+|...|++++|...|.+.. .++..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-----~~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-----LVLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CSCTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hhhcccchhh----------h
Confidence 345555666666666665544443 33333456667777788888888877752 2222111000 0
Q ss_pred CHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHhcCChHHHHHHHhhC----CCCCh----hHHHHHHHHHHHcCChhH
Q 038890 288 AIDHGKWVHGYLRRSGL--DCDVVIGTALVDMYGKCGCVERAYGVFKEM----PKKDT----LAWTAMISVFALNGYGKE 357 (569)
Q Consensus 288 ~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~ 357 (569)
.... +..+..... ..-..-|..++..+.+.|.++.+.++-... ...+. ..|..+...+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 001111100 111234667777788888877777665432 22221 257888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 038890 358 AFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEK 392 (569)
Q Consensus 358 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 392 (569)
|...+-.+..... -...+..|+..++..|..+.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9999988766433 34567777777776666543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.42 E-value=2 Score=34.53 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH-HH
Q 038890 377 FVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHV-------YHYACMIDILSRAGLFSEAERLIRSM----PMEPDV-FV 444 (569)
Q Consensus 377 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~ 444 (569)
+..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++. ..-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344555666777777776666554332222331 24455666666777777777766664 111110 00
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038890 445 WGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLM 502 (569)
Q Consensus 445 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 502 (569)
...+ .. ...... - ...+.+...-..++.+|.+.|++++|+.+++.+
T Consensus 103 ~~~~-~~---~ss~p~-------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPST-GN---SASTPQ-------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccc-cc---cCCCcc-------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0000 00 000000 0 001223356667899999999999999999864
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.15 E-value=12 Score=36.11 Aligned_cols=180 Identities=9% Similarity=0.078 Sum_probs=115.8
Q ss_pred CChHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH----cc
Q 038890 322 GCVERAYGVFKEMPK-----K----DTLAWTAMISVFALNGYGKEAFDTFREMEAE-GVRPNHVTFVGLLSACA----HS 387 (569)
Q Consensus 322 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~----~~ 387 (569)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+.-+... |..+. ....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 678888887755432 1 3455777888999999999998888766543 33222 2233333332 22
Q ss_pred CCHH--HHHHHHHHhHHhc--CCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHH
Q 038890 388 GLVE--KGRWCFVMMRHVY--LVEP---HVYHYACMIDILSRAGLFSEAERLIRSM-----PMEPD---VFVWGALLGGC 452 (569)
Q Consensus 388 ~~~~--~a~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~ 452 (569)
...+ .-..+.+.+.... .+-. .......|...+...|++.+|..++.++ +..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222 2222333222111 0111 1234467889999999999999999987 32222 24666677889
Q ss_pred HhcCCHHHHHHHHHHHhh---cCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 453 QMHGNVELGEKVAQYLID---LDPLN----HAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
...+|+.+|..+++++.. ..+++ ...+...+..+...++|.+|-+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999753 22322 3457788888999999999988777664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.96 E-value=5.7 Score=30.95 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=52.9
Q ss_pred CCCHhHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFS---EAERLIRSM-PMEP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
.|+..+--.+..++++....+ +++.++++. ...| .......|.-++.+.|+++.|.++.+.+.+.+|.|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666777777766544 456666665 2233 2345566777899999999999999999999999876543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.27 E-value=3.8 Score=31.50 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=50.8
Q ss_pred CCCHhHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 407 EPHVYHYACMIDILSRAGLFS---EAERLIRSM-PMEP--DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 407 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
.|++.+--.+..++++....+ +++.++++. ...| ....+..|.-++.+.|+++.|.+..+.+.+.+|.|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 456666666666677666543 456666655 2234 2446666777888999999999999999999998876543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.14 E-value=15 Score=35.52 Aligned_cols=189 Identities=10% Similarity=0.061 Sum_probs=118.3
Q ss_pred CCChHHHHHHHHHchhcc-ccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHH----HHHHhc
Q 038890 247 GGRAREALELFQEMQSSS-VEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALV----DMYGKC 321 (569)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 321 (569)
.|+++.|++.+..+.+.. ..............++..|...++++...+.+..+.+..-.. ......++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 378899998888877431 122344567778889999999999999888777665432222 12222333 333333
Q ss_pred CChH--HHHHHHhhCCC---C-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCC---HHHHHHHHHHH
Q 038890 322 GCVE--RAYGVFKEMPK---K-------DTLAWTAMISVFALNGYGKEAFDTFREMEA--EGVRPN---HVTFVGLLSAC 384 (569)
Q Consensus 322 g~~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~---~~~~~~ll~~~ 384 (569)
...+ .-..+.+.+.. . .......|...+...|++.+|..++.++.. .|..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 23334443332 1 112345677888889999999999998864 232222 13556667888
Q ss_pred HccCCHHHHHHHHHHhHHh-cCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 385 AHSGLVEKGRWCFVMMRHV-YLVEPH----VYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
...+++.+|..++.++... ....++ ...|...+..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999998887421 111222 245667777788888998888776654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.87 E-value=3.7 Score=42.51 Aligned_cols=83 Identities=13% Similarity=-0.021 Sum_probs=49.8
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhcC-----
Q 038890 408 PHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDVFVWGALLGGCQMHG---------NVELGEKVAQYLIDLD----- 472 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~----- 472 (569)
-+..-|..|.....|.+++++|.+.|+.. ..+-+...+..|+..|...+ +.+..+...=++...+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~RwY~ 690 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRYYN 690 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHTTB
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhccc
Confidence 34556777777777777777777777766 44567777777777777655 5565555555554311
Q ss_pred CCChhHHHHHHHHHHHcC
Q 038890 473 PLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 473 p~~~~~~~~l~~~~~~~g 490 (569)
--++.....+.....+.|
T Consensus 691 efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 691 YCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 113344444444454444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.72 E-value=2.9 Score=30.23 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4557777788888888899999999999999999999999999999987664 334567666643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.03 E-value=3.9 Score=32.88 Aligned_cols=26 Identities=4% Similarity=-0.087 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
..---+..+|.+.+++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 33334556666666666666666665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=1.9 Score=41.00 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=38.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHH
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--------PMEPDVFV 444 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~ 444 (569)
++.++...|+++++...+..+...+ +.+...|..+|.++.+.|+..+|++.|++. |+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4445556666666666666665444 445556666666666677766666666554 56665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.92 E-value=4.5 Score=29.26 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 433 IRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+-.+..-|++.+..+.+.+|.+.+|+..|.++++-++..-.+....|..++
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 333467799999999999999999999999999988875544445566655
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.71 E-value=5.8 Score=43.87 Aligned_cols=124 Identities=8% Similarity=-0.089 Sum_probs=80.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCC-----------------
Q 038890 379 GLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PME----------------- 439 (569)
Q Consensus 379 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~----------------- 439 (569)
.++..+...+..+.+..+.... +.++...-.+..+|...|++++|.+.|.+. ++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3445555666666555544332 233333345666777788888888888776 111
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 440 ------PDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP-LNH----AFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 440 ------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
.-..-|..++..+.+.+.++.+.++.+.+++..+ ++. ..|..+...+...|++++|...+-.+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 1123467777888888899999988888887543 332 25777888888999999998888766554433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.06 E-value=23 Score=33.38 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhC-CChHHHHHHHHHchhccccC-CCCccHH
Q 038890 205 SWNAMIIGYLRSGDLDVALDLFRRMKK--------RNIFSWNSIITGFVQG-GRAREALELFQEMQSSSVEE-MVKPDKI 274 (569)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~p~~~ 274 (569)
....|...|.+.|+.++...++..... ........++..+... +..+.-.++..+..+..-.. ..-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888887764 1233466677777665 44444445555444211000 0000111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc-----chhHHHHHHHHHhcCChHHHHHHHhhCCC------CChhHH-
Q 038890 275 TIASVLSACAYLGAIDHGKWVHGYLRRSGLDCD-----VVIGTALVDMYGKCGCVERAYGVFKEMPK------KDTLAW- 342 (569)
Q Consensus 275 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~- 342 (569)
.=.-++..|...|++.+|..++..+.+.--..| ..++..-+..|...+++.++...+..... +++..-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 112456677778888888777777665311111 23344556667777777777766654421 222111
Q ss_pred ---HHHHHHHH-HcCChhHHHHHHHHHHHC-C--CCCC---HHHHHHHHHHHHccCCHHHHHHHHH-HhHHhcCCCCCHh
Q 038890 343 ---TAMISVFA-LNGYGKEAFDTFREMEAE-G--VRPN---HVTFVGLLSACAHSGLVEKGRWCFV-MMRHVYLVEPHVY 411 (569)
Q Consensus 343 ---~~li~~~~-~~g~~~~A~~~~~~m~~~-~--~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 411 (569)
..-...+. ..+++..|...|-+..+. . ..|. ...|..+. +.. .++..+...++. .....+ ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhcccccccc-CCccHH
Confidence 11122344 567777777766654321 0 0111 11222221 112 222222222221 211122 235555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------cCCCChhHHHHHH
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID------LDPLNHAFYVNLC 483 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~ 483 (569)
.+..++.+| +.+++.+...++... .+..|......+ ..+++.+.. ..|-....+..++
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHHHH
Confidence 555555554 456776666666665 233344321111 111222211 2355555666666
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 484 DMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
..+.- ..+++...+-+|...|.-
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHCc--CHHHHHHHHHHHHHCCCe
Confidence 65532 688999999999887753
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=86.02 E-value=14 Score=30.98 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=6.5
Q ss_pred CChhHHHHHHHHHHHcC
Q 038890 337 KDTLAWTAMISVFALNG 353 (569)
Q Consensus 337 ~~~~~~~~li~~~~~~g 353 (569)
++...-...+.++...+
T Consensus 155 ~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333333443333
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=84.80 E-value=11 Score=29.78 Aligned_cols=80 Identities=8% Similarity=0.055 Sum_probs=55.5
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+++...|... ..+.|..-...-+.-.... +.+.++|..+.. ++......|...+..+...|++.+|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555554 4445665444333322222 337788888876 456677889999999999999999999999988
Q ss_pred HCCCCC
Q 038890 504 ERGIRK 509 (569)
Q Consensus 504 ~~g~~~ 509 (569)
+++-+|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 888776
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.52 E-value=6.4 Score=30.19 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDI 419 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (569)
|.-+..+-++.+....+.|+.......+++|.+.+|+..|.++|+-++.+.| +...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHHH
Confidence 4556777778888888899999999999999999999999999999987664 445567766643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.49 E-value=20 Score=29.78 Aligned_cols=16 Identities=13% Similarity=0.109 Sum_probs=6.0
Q ss_pred ChhHHHHHHHHHHHcC
Q 038890 338 DTLAWTAMISVFALNG 353 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g 353 (569)
+...-...+.++...|
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=82.08 E-value=17 Score=29.27 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=53.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038890 427 SEAERLIRSM-PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLID--LDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK 503 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 503 (569)
+++...|... ..+.|......-+.-.-..++ ...+|..|.. ++.....+|...+..+...|++.+|.++|+.-+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444 344566544444432222333 5667777765 556677888999999999999999999999988
Q ss_pred HCCCCCC
Q 038890 504 ERGIRKE 510 (569)
Q Consensus 504 ~~g~~~~ 510 (569)
+.+-+|.
T Consensus 124 ~~~A~P~ 130 (164)
T 2wvi_A 124 QQKAEPL 130 (164)
T ss_dssp HTTCBSH
T ss_pred HcCCCcH
Confidence 8887764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.98 E-value=29 Score=31.39 Aligned_cols=187 Identities=11% Similarity=0.027 Sum_probs=104.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 038890 179 ISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQ 258 (569)
Q Consensus 179 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 258 (569)
+..-...|++=+|.+.++ ++..-|.+.+++++|++++..- ...+.+.|+...|-++..
T Consensus 20 l~~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence 344556778878877744 5677788888888888775442 233455566655554422
Q ss_pred HchhccccCCCCccHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHhcCChHHHHHHH
Q 038890 259 EMQSSSVEEMVKPDKITIASVLSACAYLGA-----IDHGKWVHGYLRRSGL--DCDVVIGTALVDMYGKCGCVERAYGVF 331 (569)
Q Consensus 259 ~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (569)
-+++.=...+++++......++..+..... ..-..+....-.+.|- .-++.....+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 222100045567777777777766655321 1122223333333321 236678888889999999999998877
Q ss_pred hhCCCCChhHHHHHHHHHHHc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 038890 332 KEMPKKDTLAWTAMISVFALN---GYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRH 402 (569)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 402 (569)
-.-...+...+..++.-+... |...++ +...-..++ .|...|+...|..+|+...+
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 633322445554444443333 322221 111111222 34456788888888876654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.62 E-value=5.8 Score=34.84 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=33.4
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
...+.|+++.++.....-++.. +-|...-..++..+|-.|++++|..-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455667777766666666444 456666666777777777777776666655
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.39 E-value=4.8 Score=35.35 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038890 419 ILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA 477 (569)
Q Consensus 419 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 477 (569)
.+.+.|.+++|++.+..- +..| |...-..|+..++-.|++++|.+-++...+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 456778888888777665 3344 6666677888888888888888888888888887543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.12 E-value=37 Score=31.98 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CChh----
Q 038890 174 VQNSVISLFMACGFVTSARMLFDEMSN--------RDVVSWNAMIIGYLRS-GDLDVALDLFRRMKK-----RNIF---- 235 (569)
Q Consensus 174 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~~---- 235 (569)
....|...|.+.|+.++..+++..... .....-..++..+... +..+.-.++..+..+ .-.+
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888899999998888887765 2333455667766653 333444444443331 1111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCC---ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHh--CCCCcchh
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVK---PDKITIASVLSACAYLGAIDHGKWVHGYLRRS--GLDCDVVI 310 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 310 (569)
.-..++..|...|++.+|.+++..+.+.- .... --...+..-+..|...+++.++...+...... .+.+++.+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~--~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLREL--KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 12367889999999999999999887421 1111 11344566677888999999999999887653 22233333
Q ss_pred HH----HHHHHHH-hcCChHHHHHHHhhCC----CCC------hhHHHHHHHHHHHcCChhHHHHHHH-HHHHCCCCCCH
Q 038890 311 GT----ALVDMYG-KCGCVERAYGVFKEMP----KKD------TLAWTAMISVFALNGYGKEAFDTFR-EMEAEGVRPNH 374 (569)
Q Consensus 311 ~~----~l~~~~~-~~g~~~~A~~~~~~~~----~~~------~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~ 374 (569)
.. .-+-.+. ..++|..|...|-+.- ..+ ...|..+ .+. -.++..+.-.++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aL-l~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKI-MLGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHH-HTTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHH-HcCCHHHHHHHhccccccccCCccH
Confidence 22 2234456 7899999988775542 111 1122222 222 2233333333322 21111134555
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSMPMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 453 (569)
..+..++.++ ..+++.....+++..... +..|+.....+-..+. .-...++.-+- .| ...++..+...+.
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~--l~~D~~l~~h~~~L~~--~Ir~~~L~~i~----~pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKE--LAEDVIVQAHLGTLYD--TMLEQNLCRII----EPYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTT--TTTSHHHHHHHHHHHH--HHHHHHHHHHH----TTCSEEEHHHHHHHHT
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH--HhcChHHHHHHHHHHH--HHHHHHHHHHh----HhhceeeHHHHHHHHC
Confidence 5666666664 457887777777766532 3445543221111111 01112221111 12 2334455555443
Q ss_pred hcCCHHHHHHHHHHHhhcC
Q 038890 454 MHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~ 472 (569)
- ..++++..+-+++..+
T Consensus 328 l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp C--CHHHHHHHHHHHHHTT
T ss_pred c--CHHHHHHHHHHHHHCC
Confidence 2 6788888888888755
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=81.10 E-value=23 Score=29.63 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038890 120 KCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMS 199 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 199 (569)
.++..+-.+.+ .++...-...+..+...++.+....+. .+.+ .++..+-...+.++.+.|+.+....+.+.+.
T Consensus 19 ~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 91 (211)
T 3ltm_A 19 EKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKALK 91 (211)
T ss_dssp GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc
Confidence 44444444443 245555555555555555533222222 2222 2344455555556666665444444444444
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 038890 200 NRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGR 249 (569)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 249 (569)
.++..+-...+.++.+.++.+....+.+.+..++..+-...+.++.+.|.
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 45555555555555555554444344444444554444444444444444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=80.20 E-value=66 Score=34.26 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHH
Q 038890 84 ATNVFSHIKRSDLYTYNIMIRANACKSSETNDTHSGKCLKLYKQMLC 130 (569)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~A~~~~~~m~~ 130 (569)
+.++|..+. ..-|..+++...+-++.. .+.++|+.+.+
T Consensus 221 l~~Iy~k~~---~~dy~~a~~~ai~LnD~~------li~~if~~l~~ 258 (963)
T 4ady_A 221 SFDFLMNMP---NCDYLTLNKVVVNLNDAG------LALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHSS---SCCHHHHHHHHHHHTCHH------HHHHHHHHHHT
T ss_pred HHHHHHhCC---chhHHHHHHHHHHcCCHH------HHHHHHHHHHh
Confidence 445555543 235666777777777877 88888888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 569 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 7e-05
Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 10/187 (5%)
Query: 314 LVDMYGKCGCVERAYGVFK---EMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGV 370
L ++ G + A F+ + A+ + +V A + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233
Query: 371 RPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH-YACMIDILSRAGLFSEA 429
+ V L GL++ + R ++PH Y + + L G +EA
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTY---RRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 430 ERLI-RSMPMEPDVFVWGALLGGCQMH-GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYA 487
E ++ + P L + GN+E ++ + +++ P A + NL +
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 488 KAGRFDD 494
+ G+ +
Sbjct: 351 QQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 8e-04
Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 14/185 (7%)
Query: 314 LVDMYGKCGCVERAYGVFKEMPKKDT---LAWTAMISVFALNGYGKEAFDTFREMEAEGV 370
L ++ + +RA + + + V+ G A DT+R A +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR--AIEL 266
Query: 371 RPNHVTFVGLLSACAHSGLVEKGRWC---FVMMRHVYLVEPHVYHYACMIDILSRAGLFS 427
+P+ L+ L EKG + L H + +I G
Sbjct: 267 QPHFPDAYCNLANA----LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322
Query: 428 EAERLI-RSMPMEPDVFVWGALLGGCQMH-GNVELGEKVAQYLIDLDPLNHAFYVNLCDM 485
EA RL +++ + P+ + L G ++ + I + P Y N+ +
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 486 YAKAG 490
+
Sbjct: 383 LKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 569 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.47 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.21 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.2 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.2 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.04 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.47 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.31 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.02 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.67 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.47 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.28 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.03 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.04 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.34 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-21 Score=189.81 Aligned_cols=371 Identities=12% Similarity=0.054 Sum_probs=299.8
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 038890 103 IRANACKSSETNDTHSGKCLKLYKQMLCTGISP-DCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISL 181 (569)
Q Consensus 103 i~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 181 (569)
...+.+.|++. +|++.|+++.+. .| +...+..+...+...|++++|...++.+++..+. +..++..+..+
T Consensus 6 a~~~~~~G~~~------~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~ 76 (388)
T d1w3ba_ 6 AHREYQAGDFE------AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHTCHH------HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHcCCHH------HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34456677777 999999999885 36 4566777778888999999999999999998744 67788899999
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHH
Q 038890 182 FMACGFVTSARMLFDEMSN---RDVVSWNAMIIGYLRSGDLDVALDLFRRMK---KRNIFSWNSIITGFVQGGRAREALE 255 (569)
Q Consensus 182 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 255 (569)
|.+.|++++|...+....+ .+...+..........+....+........ .................+....+..
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHH
Confidence 9999999999999988765 334444455555555555555555444433 2344555666677788888888888
Q ss_pred HHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038890 256 LFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMP 335 (569)
Q Consensus 256 ~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 335 (569)
.+...... .+.+...+..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|...|+...
T Consensus 157 ~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 230 (388)
T d1w3ba_ 157 CYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHhhcc-----CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhH
Confidence 88887532 23456778888888999999999999999988875 5567788889999999999999999998765
Q ss_pred C---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhH
Q 038890 336 K---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYH 412 (569)
Q Consensus 336 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (569)
. .+...+..+...+...|++++|+..|++..+.. +-+..++..+..++...|++++|...++...... +.+...
T Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 307 (388)
T d1w3ba_ 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--Cccchh
Confidence 3 466778888899999999999999999988753 2246788888999999999999999999988554 567788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+..+..++...|++++|+..|++. ...| +..++..+..++...|++++|+..|+++++++|+++.++..++.+|.+.|
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999987 6666 56788889999999999999999999999999999999999999999887
Q ss_pred C
Q 038890 491 R 491 (569)
Q Consensus 491 ~ 491 (569)
+
T Consensus 388 D 388 (388)
T d1w3ba_ 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.9e-21 Score=184.01 Aligned_cols=353 Identities=13% Similarity=0.047 Sum_probs=291.7
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCH
Q 038890 143 LLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSN--R-DVVSWNAMIIGYLRSGDL 219 (569)
Q Consensus 143 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~ 219 (569)
+...+.+.|++++|.+.++++++..+. +...+..+..+|.+.|++++|...|++..+ | +..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 345567889999999999999998644 678888999999999999999999998865 3 567899999999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 038890 220 DVALDLFRRMKK---RNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 220 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
++|+..+....+ .+...+..........+....+......... . ..................+....+...+
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ----Y-NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----H-CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc----c-ccccccccccccccccccchhhhhHHHH
Confidence 999999998874 2334445555555566666666666555542 1 2334445555666677788888888888
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 038890 297 GYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPN 373 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 373 (569)
....... +.+...+..+...+...|+++.|...+++..+ .+...|..+...+...|++++|+..+++..... +.+
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 8877664 55667788889999999999999999987653 466788899999999999999999999988764 345
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 038890 374 HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGG 451 (569)
Q Consensus 374 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 451 (569)
...+..+..++...|++++|...|++..+.. +.+..++..+..++...|++++|++.++.. ..+.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHH
Confidence 6778888899999999999999999988543 456788999999999999999999999988 334577889999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 452 CQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...|++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.4e-14 Score=130.99 Aligned_cols=241 Identities=10% Similarity=-0.044 Sum_probs=164.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 038890 239 SIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMY 318 (569)
Q Consensus 239 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (569)
.....+.+.|++++|+..|+++.+. -+-+..+|..+..++...|+++.|...+.++.+.. +.+...+..++..|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 97 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccc
Confidence 4556677777777777777777632 13346667777777777777777777777776654 34455566666666
Q ss_pred HhcCChHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 319 GKCGCVERAYGVFKEMPKKDTL---AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
...|++++|.+.++.....++. .+....... ...+.......+..+...+.+.++..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKE 157 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHH
Confidence 6666666666666554321110 000000000 00000001111122334456677888
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
.+....+...-..+...+..+...+...|++++|+..+++. ...| +..+|..+...+...|++++|++.++++++.+|
T Consensus 158 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 158 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 88877754433456778888999999999999999999987 4444 577889999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 474 LNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 474 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
.++.++..++.+|.+.|++++|+..|++..+.
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998773
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=9.8e-14 Score=129.70 Aligned_cols=268 Identities=13% Similarity=0.033 Sum_probs=197.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHH
Q 038890 206 WNAMIIGYLRSGDLDVALDLFRRMKK--R-NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSA 282 (569)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~ 282 (569)
+-.....+.+.|++++|+..|+++.+ | +..+|..+..++...|++++|...|.+..+.. +-+...+..+..+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~ 96 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-----PDNQTALMALAVS 96 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-----ccccccccccccc
Confidence 33567778899999999999999864 3 46789999999999999999999999987421 3457788888999
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 038890 283 CAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTF 362 (569)
Q Consensus 283 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (569)
+...|++++|...++.+...... ............. . .+.......+..+...+...+|...|
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAG-G---------------AGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHhccc-hHHHHHhhhhhhh-h---------------cccccchhhHHHHHHhhHHHHHHHHH
Confidence 99999999999999998875421 1111110000000 0 00011111122334456677888888
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 038890 363 REMEAEG-VRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP 440 (569)
Q Consensus 363 ~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 440 (569)
.+..+.. -.++...+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|++.|++. ...|
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 8877632 23456778888888999999999999999988544 456788999999999999999999999988 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh-----------HHHHHHHHHHHcCChHHHHH
Q 038890 441 -DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA-----------FYVNLCDMYAKAGRFDDVKK 497 (569)
Q Consensus 441 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~ 497 (569)
+..+|..+..+|...|++++|++.|++++++.|.+.. .|..+..++...|+.+.+..
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5678999999999999999999999999998776553 35666777777777765544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.1e-09 Score=102.96 Aligned_cols=266 Identities=11% Similarity=-0.013 Sum_probs=172.2
Q ss_pred HHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--C---CcchhHHHH
Q 038890 240 IITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGL--D---CDVVIGTAL 314 (569)
Q Consensus 240 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l 314 (569)
....+...|++++|+.++++................+..+..++...|++++|...++++.+... . .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34456667777777777776653110000000123455556666777777777777776654211 1 112334555
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----CCCHHHHHH
Q 038890 315 VDMYGKCGCVERAYGVFKEMPK-------K----DTLAWTAMISVFALNGYGKEAFDTFREMEAEGV----RPNHVTFVG 379 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ 379 (569)
...+...|++..+...+..... + ....+..+...+...|+++.+...+........ .....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6667777777777776665421 1 122455566778888999999988888765322 122345555
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCC-----CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHH
Q 038890 380 LLSACAHSGLVEKGRWCFVMMRHVYLVEP-----HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-----DVFVWGAL 448 (569)
Q Consensus 380 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l 448 (569)
....+...++...+...+........-.. ....+..+...+...|++++|...++.. ...| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 66667778888888888776654322111 1234566777888999999999999887 2221 23466677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDL------DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
..++...|++++|...++++... .|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88899999999999999988742 2445677888999999999999999999987553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2e-09 Score=98.95 Aligned_cols=211 Identities=9% Similarity=0.006 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHH
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCG-CVERAYGVFKEMPK---KDTLAWTAMISVF 349 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~ 349 (569)
..++.+...+.+.+.+++|+.+++++.+.+ |-+...|+....++...| ++++|+..++.+.+ .+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 445555555666677777777777777764 555666677777766665 47777777776543 3567788888888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC----
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL---- 425 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 425 (569)
...|++++|+..++++.+.. +-+...|..+...+...|++++|+..++.+.+.. +.+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccchh
Confidence 88888888888888888742 2256778888888888888888888888888544 4566777777777766655
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHc
Q 038890 426 --FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL--NHAFYVNLCDMYAKA 489 (569)
Q Consensus 426 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~ 489 (569)
+++|++.+..+ ...| +...|..+...+. ....+++.+.++.+.+..|. ++..+..++..|...
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 56788777776 4445 5666766665544 44567888888888887765 455666777777543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2e-08 Score=93.90 Aligned_cols=256 Identities=10% Similarity=-0.039 Sum_probs=147.6
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHH
Q 038890 145 KECTKRLDGLVGASVYGQVVKFGVCDD----VFVQNSVISLFMACGFVTSARMLFDEMSN-----RD----VVSWNAMII 211 (569)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~ 211 (569)
..+...|++++|..++++.++..+..+ ...+..+..+|...|++++|...|++..+ ++ ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 446678999999999999888653322 23566677888889999999998887654 12 234555666
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHH
Q 038890 212 GYLRSGDLDVALDLFRRMKK-------R----NIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVL 280 (569)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll 280 (569)
.+...|++..+...+.+... + ....+..+...+...|+++.+...+..........+.......+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 77778888888777765431 1 112455566777788888888888777654321223334455555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCC----C--cchhHHHHHHHHHhcCChHHHHHHHhhCCCC-------ChhHHHHHHH
Q 038890 281 SACAYLGAIDHGKWVHGYLRRSGLD----C--DVVIGTALVDMYGKCGCVERAYGVFKEMPKK-------DTLAWTAMIS 347 (569)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~ 347 (569)
..+...++...+...+......... + ....+..+...+...|+++.|...+...... ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6667777777777666655432111 0 1123344445555666666666666554431 1123334455
Q ss_pred HHHHcCChhHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHh
Q 038890 348 VFALNGYGKEAFDTFREMEA----EGVRPNH-VTFVGLLSACAHSGLVEKGRWCFVMM 400 (569)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 400 (569)
.+...|++++|...+++... .+..|+. ..+..+..++...|++++|...+++.
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555566555555555432 1222221 23344444455555555555554443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=7.3e-10 Score=99.10 Aligned_cols=201 Identities=8% Similarity=-0.075 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 038890 274 ITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFA 350 (569)
Q Consensus 274 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 350 (569)
.++..+..+|.+.|++++|...|++..+.. |.+..++..+..+|.+.|++++|...|+++.+ .+..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 455566667777777777777777777664 45566777777777777777777777776653 24556777777788
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCC----H
Q 038890 351 LNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGL----F 426 (569)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~ 426 (569)
..|++++|+..|++..+.. +.+......+..++.+.+..+....+....... .+....++ ++..+..... .
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHH
Confidence 8888888888888777643 223333333334444555554444444444421 12222222 2222221111 2
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 427 SEAERLIRSM-PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 427 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
+.+...+... ...|+ ..+|..+...+...|++++|...|+++++.+|.+...+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222111 11232 246677888889999999999999999999998764443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.5e-08 Score=92.95 Aligned_cols=241 Identities=10% Similarity=0.069 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCcchhHHHH
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG-AIDHGKWVHGYLRRSGLDCDVVIGTAL 314 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (569)
.|+.+...+.+.+.+++|+.++++++... |-+...|+....++...| ++++|...++.+.+.. +-+..++..+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-----P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~ 118 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHH
Confidence 45566666777777777777777776321 334556666666666655 4777777777777765 5566777777
Q ss_pred HHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--
Q 038890 315 VDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL-- 389 (569)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-- 389 (569)
...+.+.|++++|+..++++.+ .+...|..+...+...|++++|+..++++++.... +...|+.+...+.+.+.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence 7777888888888888777654 35677888888888888888888888888775322 45566655555444443
Q ss_pred ----HHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc--CC--
Q 038890 390 ----VEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PMEPDVFVWGALLGGCQMH--GN-- 457 (569)
Q Consensus 390 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~--~~-- 457 (569)
+++|...+....+.. +.+...|..+...+...| .+++.+.++.. +...+...+..++..+... ++
T Consensus 198 ~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 567777777777543 446667776666554433 45555555544 2233455666666655432 22
Q ss_pred -----HHHHHHHHHHHh-hcCCCChhHHHHHHHHH
Q 038890 458 -----VELGEKVAQYLI-DLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 458 -----~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~ 486 (569)
+++|.++++... +.+|-....|..++..+
T Consensus 275 ~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 275 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 309 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344444444432 34555555566555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=1.5e-08 Score=92.78 Aligned_cols=185 Identities=14% Similarity=0.048 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCC---C-hhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 288 AIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKK---D-TLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
..+.+..+|++..+...+.+...+...+..+.+.|+++.|..+|+.+... + ...|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34666677777666544445556666667777777777777777765431 2 2356666666667777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CC
Q 038890 364 EMEAEGVRPNHVTFVGLLS-ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM----PM 438 (569)
Q Consensus 364 ~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 438 (569)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.+ +.+...|...++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 76664322 2233332222 2234566777777777776544 445666677777777777777777777765 22
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 439 EPD--VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 439 ~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
.|+ ...|...+.--...|+.+.+..+++++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 332 3456666666666677777777777776666554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=4.2e-10 Score=104.99 Aligned_cols=231 Identities=7% Similarity=-0.031 Sum_probs=166.2
Q ss_pred HhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCcchhH-HHHHHHHHhc
Q 038890 245 VQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLG--AIDHGKWVHGYLRRSGLDCDVVIG-TALVDMYGKC 321 (569)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 321 (569)
...|++++|+..++...+. .+-+...+..+..++...+ +++++...+..+.+.. +++...+ ......+...
T Consensus 84 ~~~~~~~~al~~~~~~l~~-----~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~ 157 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRV-----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAA 157 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHh-----CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhc
Confidence 3445577888888887632 1345556666665555544 5788888888888875 3344443 4455677788
Q ss_pred CChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 322 GCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFV 398 (569)
Q Consensus 322 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 398 (569)
|.++.|+..++.+... +...|+.+...+...|++++|...+....+. .|+. ..+...+...+..+.+...+.
T Consensus 158 ~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~ 232 (334)
T d1dcea1 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYH 232 (334)
T ss_dssp CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHH
Confidence 9999999999888763 5678888888999999888776665544331 1221 122233445566667777777
Q ss_pred HhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038890 399 MMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNH 476 (569)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 476 (569)
...... +++...+..++..+...|+.++|...+.+. ...| +..++..+...+...|++++|.+.++++.+++|.+.
T Consensus 233 ~~l~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~ 310 (334)
T d1dcea1 233 RWLLGR--AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310 (334)
T ss_dssp HHHHSC--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhC--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence 776433 455666777788888899999999999887 5556 456888888999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 038890 477 AFYVNLCDMYAK 488 (569)
Q Consensus 477 ~~~~~l~~~~~~ 488 (569)
..|..|...+.-
T Consensus 311 ~y~~~L~~~~~~ 322 (334)
T d1dcea1 311 AYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 999988776664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=3.2e-08 Score=90.53 Aligned_cols=181 Identities=9% Similarity=0.004 Sum_probs=143.9
Q ss_pred ChHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038890 323 CVERAYGVFKEMPK----KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFV 398 (569)
Q Consensus 323 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 398 (569)
..++|..+|++..+ .+...|...+......|+.+.|..+|+++++.........|..++..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888876542 35667888888899999999999999999875433334578888999999999999999999
Q ss_pred HhHHhcCCCCCHhHHHHHHHH-HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038890 399 MMRHVYLVEPHVYHYACMIDI-LSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLN 475 (569)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 475 (569)
.+.+.. +.+...|...... +...|+.+.|..+|+.+ ..+.+...|..++..+...|+++.|..+|+++++..|.+
T Consensus 159 ~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 998543 3444555544443 34468999999999998 333467889999999999999999999999999977654
Q ss_pred h----hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 476 H----AFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 476 ~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+ ..|...+..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 47888888888899999999999988664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.2e-09 Score=95.83 Aligned_cols=213 Identities=10% Similarity=-0.031 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHhCC-CC--cchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHH
Q 038890 290 DHGKWVHGYLRRSGL-DC--DVVIGTALVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFR 363 (569)
Q Consensus 290 ~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (569)
+.+..-++++..... .+ ...++..+..+|.+.|++++|...|++... .++.+|+.+..++...|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 344444455544321 11 234667788999999999999999998753 478899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 038890 364 EMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV 442 (569)
Q Consensus 364 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 442 (569)
+..+... -+..++..+..++...|+++.|...|+...+.. +.+......+...+.+.+..+.+..+.... ...++.
T Consensus 96 ~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 96 SVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 9998532 245678888899999999999999999998654 345555555555666666655555554444 112222
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 443 FVWGALLGGCQ----MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 443 ~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
..+. ++..+. ..+..+.+...+.......|....++..++..|...|++++|...|++.....
T Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 173 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222 122221 12223444444444444556667788899999999999999999999987644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=4.7e-08 Score=90.68 Aligned_cols=235 Identities=12% Similarity=0.069 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHCCCCCCcccH-HH---HHHHHH-------ccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--
Q 038890 120 KCLKLYKQMLCTGISPDCLTF-PF---LLKECT-------KRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACG-- 186 (569)
Q Consensus 120 ~A~~~~~~m~~~g~~p~~~~~-~~---ll~~~~-------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-- 186 (569)
+|++++++.++ ..|+..+. +. ++..+. ..|.++.|+.+++..++..+. +...+..+..++...+
T Consensus 47 ~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 47 SVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccc
Confidence 99999999998 45776543 22 222222 234578899999999887754 6777777777777665
Q ss_pred CHHHHHHHHhhcCC---CChhHHHH-HHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHH
Q 038890 187 FVTSARMLFDEMSN---RDVVSWNA-MIIGYLRSGDLDVALDLFRRMKKR---NIFSWNSIITGFVQGGRAREALELFQE 259 (569)
Q Consensus 187 ~~~~A~~~~~~~~~---~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 259 (569)
++++|...+.+..+ ++...+.. ....+...+..++|+..++.+.+. +...|+.+..++.+.|++++|...+..
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 47899998888765 34555543 446677789999999999988753 456788888899999998887666655
Q ss_pred chhccccCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 038890 260 MQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDT 339 (569)
Q Consensus 260 m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 339 (569)
... +.|+. ......+...+..+++...+....... +++...+..++..+...|++++|...+.+..+.++
T Consensus 204 ~~~------~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 204 PEN------VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CHH------HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hHH------hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 431 11211 122333445566666766666666554 44455555566666667777777777776665543
Q ss_pred ---hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038890 340 ---LAWTAMISVFALNGYGKEAFDTFREMEA 367 (569)
Q Consensus 340 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (569)
.+|..+...+...|+.++|++.|++..+
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455566666666777777777776666
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.6e-07 Score=70.33 Aligned_cols=103 Identities=10% Similarity=0.049 Sum_probs=64.8
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038890 381 LSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNV 458 (569)
Q Consensus 381 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 458 (569)
...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|+..+... ...| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 344556666666666666666433 445566666666666666666666666666 2223 555666666666677777
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHH
Q 038890 459 ELGEKVAQYLIDLDPLNHAFYVNLCDM 485 (569)
Q Consensus 459 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 485 (569)
++|+..++++++.+|.++.++..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777677666666555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.5e-07 Score=75.05 Aligned_cols=119 Identities=7% Similarity=-0.025 Sum_probs=99.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMH 455 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 455 (569)
......|.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|+++ ...| +...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 334567789999999999999999654 567889999999999999999999999988 4455 567999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHHH--HHcCChHHHHHH
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYVNLCDMY--AKAGRFDDVKKT 498 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 498 (569)
|++++|...++++....|.++.++..+..+. .+.+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998888776654 344556666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=1.2e-07 Score=80.50 Aligned_cols=115 Identities=8% Similarity=-0.150 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALL 449 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 449 (569)
|+...+......+.+.|++++|+..|++..... +.++..|..+..+|.+.|++++|+..|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 566666666667777777777777777666443 445666777777777777777777777766 5555 355666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 450 GGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
.++...|++++|+..|+++.++.|.+...+...+..+.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777777777777777766665544444434444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.8e-07 Score=77.21 Aligned_cols=118 Identities=14% Similarity=0.003 Sum_probs=65.2
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 461 (569)
+...|+++.|++.|..+. +|++.+|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 344555555555555432 344555555555666666666666665555 3333 344555555556666666666
Q ss_pred HHHHHHHhhcCCCC----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 462 EKVAQYLIDLDPLN----------------HAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 462 ~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
...|++++...+.+ ..++..++.++.+.|++++|.+.++......
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666655433221 2344556666666777777766666655433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=7.6e-08 Score=81.77 Aligned_cols=96 Identities=7% Similarity=-0.124 Sum_probs=69.5
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 338 DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+...+......+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|+++.|+..|+...+.. +-+..+|..+.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~lg 79 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHHH
Confidence 44455566777788888888888888777643 2355677777778888888888888888777422 33567777788
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038890 418 DILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~~ 436 (569)
.+|...|++++|+..|+++
T Consensus 80 ~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 8888888888888888766
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=3.5e-07 Score=69.60 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 038890 415 CMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRF 492 (569)
Q Consensus 415 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 492 (569)
.-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.+|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3567788999999999999998 4445 6778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC
Q 038890 493 DDVKKTRNLMKER 505 (569)
Q Consensus 493 ~~A~~~~~~m~~~ 505 (569)
++|...+++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.5e-06 Score=72.58 Aligned_cols=138 Identities=6% Similarity=-0.111 Sum_probs=85.9
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038890 316 DMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRW 395 (569)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 395 (569)
..+...|+++.|++.|..+..++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|..
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHH
Confidence 345666777777777777766666677777777777777777777777776642 1234566666666777777777777
Q ss_pred HHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038890 396 CFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 472 (569)
.|++..... +.+... . +... ..+++ ..++..+..++.+.|++++|.+.++++.+..
T Consensus 92 ~~~kAl~~~--~~n~~~------~-------------~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 92 DLKEALIQL--RGNQLI------D-------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHTT--TTCSEE------E-------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC--ccCchH------H-------------HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 766665321 111000 0 0000 01111 2455667778888899999999999888887
Q ss_pred CCC
Q 038890 473 PLN 475 (569)
Q Consensus 473 p~~ 475 (569)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=2.2e-07 Score=70.10 Aligned_cols=90 Identities=13% Similarity=-0.020 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR 491 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 491 (569)
..+...+.+.|++++|+..|++. ...| +...|..+..++.+.|++++|+..++++++.+|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 44677788999999999999998 4455 678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 038890 492 FDDVKKTRNLMK 503 (569)
Q Consensus 492 ~~~A~~~~~~m~ 503 (569)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=5e-07 Score=73.15 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 038890 413 YACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAG 490 (569)
Q Consensus 413 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 490 (569)
+......|.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++.+|.+..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344566788999999999999998 4445 67789999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCC
Q 038890 491 RFDDVKKTRNLMKERG 506 (569)
Q Consensus 491 ~~~~A~~~~~~m~~~g 506 (569)
++++|...+++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999998754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=2.9e-06 Score=76.33 Aligned_cols=118 Identities=10% Similarity=-0.008 Sum_probs=59.8
Q ss_pred HHHHHccCCcHHHHHHHHHHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHH
Q 038890 144 LKECTKRLDGLVGASVYGQVVKF----GVCD-DVFVQNSVISLFMACGFVTSARMLFDEMSN-----RD----VVSWNAM 209 (569)
Q Consensus 144 l~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l 209 (569)
...+...+++++|...|.++.+. +-.+ -..+|+.+..+|.+.|++++|...+++..+ .+ ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566677777777777776653 1111 134566667777777777777776665432 11 1223333
Q ss_pred HHHHHh-cCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 210 IIGYLR-SGDLDVALDLFRRMKK-----RN----IFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 210 ~~~~~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
...|.. .|++++|+..+++..+ .+ ..++..+...+.+.|++++|+..|+++.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 333322 3555555555544321 00 1234444445555555555555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5.9e-07 Score=68.50 Aligned_cols=105 Identities=13% Similarity=-0.101 Sum_probs=83.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLF---SEAERLIRSM-PMEPDV---FVWGALLG 450 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~l~~ 450 (569)
..++..+...+++++|.+.|+...... +.++.++..+..++.+.++. ++|+.+|+++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456777788889999999999988654 56778888888888875554 5689999887 444533 36788899
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 038890 451 GCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCD 484 (569)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 484 (569)
+|.+.|++++|++.|+++++++|.+..+......
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 9999999999999999999999999877665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=2.1e-06 Score=77.29 Aligned_cols=130 Identities=10% Similarity=-0.018 Sum_probs=61.3
Q ss_pred HHHHHHHHH-cCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----H-h
Q 038890 343 TAMISVFAL-NGYGKEAFDTFREMEA----EGVRPN-HVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPH----V-Y 411 (569)
Q Consensus 343 ~~li~~~~~-~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~-~ 411 (569)
..+...|.. .|++++|+..+++..+ .+..+. ..++..+...+...|++++|...|+.+.....-.+. . .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 334444433 3666666666655432 111111 234555566666667777777766666543211110 0 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHh--cCCHHHHHHHHHHHhhcC
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PMEPD------VFVWGALLGGCQM--HGNVELGEKVAQYLIDLD 472 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~ 472 (569)
.+...+..+...|+++.|...+++. ...|+ ......++.++.. .+.+++|+..|+.+.+++
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 2333444555666777777766666 33331 1233444444433 233555555555444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.8e-06 Score=69.31 Aligned_cols=85 Identities=14% Similarity=-0.024 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
.+|+.+..+|.+.|++++|+..++.. ...| +..+|..+..++...|++++|+..|+++.+++|.++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45777889999999999999999988 5455 788999999999999999999999999999999999999998888776
Q ss_pred cCChHHH
Q 038890 489 AGRFDDV 495 (569)
Q Consensus 489 ~g~~~~A 495 (569)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=5.1e-05 Score=66.81 Aligned_cols=147 Identities=9% Similarity=-0.130 Sum_probs=96.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cC
Q 038890 353 GYGKEAFDTFREMEAEGVRPNHVTFVGLLSAC----AHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AG 424 (569)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 424 (569)
.+.+.|...++...+.|.. .....+...+ ........+...+..... ..+...+..|...|.. ..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCC
T ss_pred hhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccc
Confidence 4566777777776665532 1112222222 224456666666666553 3456667777777765 34
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH----cCChHHHH
Q 038890 425 LFSEAERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK----AGRFDDVK 496 (569)
Q Consensus 425 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 496 (569)
+...+..+++......+......+...+.. ..+++.|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.
T Consensus 161 ~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~ 238 (265)
T d1ouva_ 161 DLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAI 238 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred ccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHH
Confidence 566777776665223356666666666654 568999999999998876 46678889988886 34799999
Q ss_pred HHHHHHHHCCCC
Q 038890 497 KTRNLMKERGIR 508 (569)
Q Consensus 497 ~~~~~m~~~g~~ 508 (569)
++|++..+.|..
T Consensus 239 ~~~~kAa~~g~~ 250 (265)
T d1ouva_ 239 ENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHTCH
T ss_pred HHHHHHHHCcCH
Confidence 999999888854
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.7e-06 Score=63.88 Aligned_cols=93 Identities=8% Similarity=-0.025 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCC--hhHHHHHHHHH
Q 038890 414 ACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG---NVELGEKVAQYLIDLDPLN--HAFYVNLCDMY 486 (569)
Q Consensus 414 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 486 (569)
..++..+...+++++|.+.|++. ...| +..++..+..++.+.+ ++++|+.+++++.+.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999998 4444 7788889999987655 4567999999999988764 34789999999
Q ss_pred HHcCChHHHHHHHHHHHHCC
Q 038890 487 AKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g 506 (569)
.+.|++++|.+.|+++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998843
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=7e-06 Score=66.90 Aligned_cols=64 Identities=8% Similarity=-0.111 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+|+.+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3567788889999999999999999999999999999999999999999999999999998754
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=0.0014 Score=58.69 Aligned_cols=250 Identities=9% Similarity=0.025 Sum_probs=107.9
Q ss_pred CCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038890 135 PDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYL 214 (569)
Q Consensus 135 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 214 (569)
||..--..+..-|.+.|.++.|..+|..+ .-|..++..+.+.+++..|.+++.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 34433444555555666666666666533 11344555566666666666655533 24445555555555
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHccCCHHHHHH
Q 038890 215 RSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAYLGAIDHGKW 294 (569)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 294 (569)
+......|.-+ ......+......++..|-..|.+++...+++... .. -.++...++-++..|++.+. ++
T Consensus 81 ~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~----~~-~~~~~~~~~~L~~lyak~~~-~k--- 150 (336)
T d1b89a_ 81 DGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAAL----GL-ERAHMGMFTELAILYSKFKP-QK--- 150 (336)
T ss_dssp HTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TS-TTCCHHHHHHHHHHHHTTCH-HH---
T ss_pred hCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH----cC-CccchHHHHHHHHHHHHhCh-HH---
Confidence 55544433211 11111233333455555666666666666666543 11 13344455555555555432 22
Q ss_pred HHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038890 295 VHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNH 374 (569)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 374 (569)
+.+.+...+...+ ...++..|.+.+- |..++..|.+.|+++.|..+.-. ..++.
T Consensus 151 l~e~l~~~s~~y~---~~k~~~~c~~~~l------------------~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~ 204 (336)
T d1b89a_ 151 MREHLELFWSRVN---IPKVLRAAEQAHL------------------WAELVFLYDKYEEYDNAIITMMN-----HPTDA 204 (336)
T ss_dssp HHHHHHHHSTTSC---HHHHHHHHHTTTC------------------HHHHHHHHHHTTCHHHHHHHHHH-----STTTT
T ss_pred HHHHHHhccccCC---HHHHHHHHHHcCC------------------hHHHHHHHHhcCCHHHHHHHHHH-----cchhh
Confidence 2222222111111 1112233333333 33444455566666666555422 12333
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038890 375 VTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM 436 (569)
Q Consensus 375 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 436 (569)
......+..+.+..+.+...++.....+. .| ...+.++......-++.+.++.+++-
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 33444455566666666555555544421 22 33445555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.22 E-value=2.8e-05 Score=61.91 Aligned_cols=64 Identities=11% Similarity=-0.050 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+|..+..+|.+.|++++|++.++++++.+|.+..+|..++.+|...|++++|...|++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566778888888999999999999999999888889999999999999999999888887643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=1e-05 Score=64.58 Aligned_cols=127 Identities=10% Similarity=-0.073 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHH
Q 038890 341 AWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDIL 420 (569)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (569)
.+......+.+.|++.+|+..|.+.+..- |... ...... ...... .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~---~~~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQI---LLDKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHH---HHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHH---HHHhhh-----hHHHHHHhhHHHHH
Confidence 45556667777888888888887776531 1100 000000 000000 11234678899999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 421 SRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 421 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
.+.|++++|++.++.. ...| +..+|..+..++...|++++|...|+++.+++|.+..+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999998 4455 778999999999999999999999999999999999888877665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.20 E-value=2.6e-05 Score=63.21 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 411 YHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
.+|+.+..+|.+.|++++|+..++.. ...| +...|..+..++...|++++|+..|+++.+++|+++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45777888999999999999999988 4444 778999999999999999999999999999999999998888888777
Q ss_pred cCChHH-HHHHHHHH
Q 038890 489 AGRFDD-VKKTRNLM 502 (569)
Q Consensus 489 ~g~~~~-A~~~~~~m 502 (569)
.+...+ ..+++..|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 665543 44455555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=9.4e-06 Score=66.11 Aligned_cols=86 Identities=10% Similarity=-0.010 Sum_probs=72.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 038890 409 HVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMY 486 (569)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 486 (569)
....|..+..++.+.|++++|+..++++ .+.| +...|..+..++...|++++|++.|+++++++|.+..+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567788889999999999999999988 6566 6678999999999999999999999999999999998888887776
Q ss_pred HHcCChHH
Q 038890 487 AKAGRFDD 494 (569)
Q Consensus 487 ~~~g~~~~ 494 (569)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=7.6e-06 Score=63.03 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh-------HHHHH
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHA-------FYVNL 482 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 482 (569)
.+..+...+.+.|++++|+..|++. ...| +...+..+..+|.+.|++++|++.++++++.+|.++. +|..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3556778889999999999999888 4444 6788899999999999999999999999998877654 55667
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 038890 483 CDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 483 ~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
+..+...+++++|.+.+++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 7778888899999999988765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.04 E-value=1.5e-05 Score=59.56 Aligned_cols=83 Identities=10% Similarity=-0.025 Sum_probs=41.0
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038890 383 ACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVEL 460 (569)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 460 (569)
.+.+.|++++|...|++..+.. +-++..|..+..++.+.|++++|+..|++. .+.| +...|..+...+...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence 3444555555555555554332 223445555555555555555555555554 2223 34455555555555555555
Q ss_pred HHHHHHH
Q 038890 461 GEKVAQY 467 (569)
Q Consensus 461 a~~~~~~ 467 (569)
|++.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=1.7e-05 Score=64.44 Aligned_cols=65 Identities=8% Similarity=-0.031 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
+...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|.+.|++++|...|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567788889999999999999999999999999999999999999999999999999999874
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=8.6e-07 Score=86.52 Aligned_cols=109 Identities=14% Similarity=-0.115 Sum_probs=45.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038890 376 TFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQ 453 (569)
Q Consensus 376 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 453 (569)
.+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|+..|++. ...| +...|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI----CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 34444444555555555555444433210 1234444555555555555555555555 3333 2345555555555
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 038890 454 MHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK 488 (569)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 488 (569)
..|+..+|...|.+++...|+.+.++.+|+..+.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=0.0025 Score=55.45 Aligned_cols=222 Identities=8% Similarity=-0.142 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCcchhH
Q 038890 236 SWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKITIASVLSACAY----LGAIDHGKWVHGYLRRSGLDCDVVIG 311 (569)
Q Consensus 236 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (569)
.+..|...+.+.+++++|++.|++.. ..| +...+..|...|.. ..+...+...+....+.+. ....
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa----~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~ 73 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKAC----DLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGC 73 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH----HCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchh
Confidence 34444444555555555555555554 211 23333333333332 3345555555555544431 1122
Q ss_pred HHHHHHHHh----cCChHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038890 312 TALVDMYGK----CGCVERAYGVFKEMPKK-DTLAWTAMISVFAL----NGYGKEAFDTFREMEAEGVRPNHVTFVGLLS 382 (569)
Q Consensus 312 ~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 382 (569)
..+...+.. .++.+.|...++...+. .......+...+.. ......+...+...... .+...+..+..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 222222221 23455555555544332 22222223223322 23455566666655543 24555555655
Q ss_pred HHHc----cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038890 383 ACAH----SGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEAERLIRSMPMEPDVFVWGALLGGCQM 454 (569)
Q Consensus 383 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (569)
.+.. ..+...+...++...+ ..+......+...|.. ..++++|+.+|+.....-++..+..|...|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhccCCCcccccccchhhhhcccc----ccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHc
Confidence 5553 4566677777777664 2355666666666665 56788888888887212255666667776654
Q ss_pred ----cCCHHHHHHHHHHHhhcCCC
Q 038890 455 ----HGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 455 ----~~~~~~a~~~~~~~~~~~p~ 474 (569)
..+.+.|.+.|+++.+.+..
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCH
Confidence 34788899988888877754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.01 E-value=3.7e-05 Score=62.76 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-----HCCCCCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMK-----ERGIRKE 510 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~ 510 (569)
..+..+...+...|++++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++. +.|+.|.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 4677788899999999999999999999999999999999999999999999999999984 4688876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=6.8e-05 Score=60.66 Aligned_cols=64 Identities=11% Similarity=-0.028 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 443 FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.+|..+..++.+.|++++|+..++++++++|.+..++..++.+|...|++++|...|+++.+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566678889999999999999999999999999999999999999999999999999998743
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.00022 Score=54.43 Aligned_cols=95 Identities=3% Similarity=-0.049 Sum_probs=60.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC-----HHHHHHH
Q 038890 378 VGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PM---EPD-----VFVWGAL 448 (569)
Q Consensus 378 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~-----~~~~~~l 448 (569)
..+...+...|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..++++ .+ .+. ..+|..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344555666667777777776666443 345666666777777777777777766665 11 111 2356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038890 449 LGGCQMHGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 449 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 474 (569)
...+...+++++|++.+++.....+.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77777788888888888887776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.81 E-value=1.8e-05 Score=62.30 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=48.5
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 038890 426 FSEAERLIRSM-PMEP-DVFVWGALLGGCQMHG-----------NVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRF 492 (569)
Q Consensus 426 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 492 (569)
+++|+..|++. .+.| +..+|..+..+|...| ++++|.+.|+++++.+|.+..++..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 34555555555 3333 3445555555554433 46889999999999999998877777544
Q ss_pred HHHHHHHHHHHHCCC
Q 038890 493 DDVKKTRNLMKERGI 507 (569)
Q Consensus 493 ~~A~~~~~~m~~~g~ 507 (569)
..|.+++.+..+.|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 456666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=9.8e-05 Score=52.93 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 410 VYHYACMIDILSRAGLFSEAERLIRSM--------PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
...+-.+...+.+.|++++|+..|++. ...++ ..++..+..++.+.|++++|+..++++++++|.++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344456777778888888888887766 11223 467888999999999999999999999999999999888
Q ss_pred HHHH
Q 038890 481 NLCD 484 (569)
Q Consensus 481 ~l~~ 484 (569)
.+..
T Consensus 85 Nl~~ 88 (95)
T d1tjca_ 85 NLKY 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.73 E-value=9.7e-05 Score=58.86 Aligned_cols=89 Identities=13% Similarity=-0.026 Sum_probs=65.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-------C-
Q 038890 417 IDILSRAGLFSEAERLIRSM----PMEPD----------VFVWGALLGGCQMHGNVELGEKVAQYLIDLDP-------L- 474 (569)
Q Consensus 417 ~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-------~- 474 (569)
...+.+.|++++|+..|++. +..|+ ..+|+.+..++...|++++|...++++++..| .
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44455667777777777666 21121 35677888889999999999988888876432 2
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038890 475 ---NHAFYVNLCDMYAKAGRFDDVKKTRNLMKER 505 (569)
Q Consensus 475 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 505 (569)
...++..++.+|...|++++|...|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235788999999999999999999998754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=2.2e-05 Score=76.26 Aligned_cols=219 Identities=6% Similarity=-0.122 Sum_probs=124.5
Q ss_pred HHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCCccHH-HHHHHHHHHHccCCHHHHHHHH
Q 038890 221 VALDLFRRMKK--RN-IFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVKPDKI-TIASVLSACAYLGAIDHGKWVH 296 (569)
Q Consensus 221 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 296 (569)
+|.+.|++..+ |+ ...+..+..++...|++++| |+++.. ..|+.. ..+.. ..+- ...+..+...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~------~dp~~a~~~~~e-~~Lw-~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLV------TDLEYALDKKVE-QDLW-NHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH------HCHHHHHHHTHH-HHHH-HHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH------cChhhHHHHhHH-HHHH-HHHHHHHHHHH
Confidence 56777777753 44 45677788888888888876 666542 123211 11110 1111 11234455666
Q ss_pred HHHHHhCCCCcchhHHH--HHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 038890 297 GYLRRSGLDCDVVIGTA--LVDMYGKCGCVERAYGVFKEMPK---KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVR 371 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (569)
+...+....++..-... +...+...+.++.++..+..... ++...+..+...+.+.|+.+.|...+.......
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH--
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 66555433333322221 22233345677888887776554 345667788888889999999998887765421
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 038890 372 PNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALL 449 (569)
Q Consensus 372 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 449 (569)
...++..+...+...|++++|...|++..+.. +.+...|+.|...+...|+..+|+..|.+. -.+|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 13577788889999999999999999999654 556789999999999999999999999988 3356778888888
Q ss_pred HHHHhc
Q 038890 450 GGCQMH 455 (569)
Q Consensus 450 ~~~~~~ 455 (569)
..+.+.
T Consensus 228 ~~~~~~ 233 (497)
T d1ya0a1 228 KALSKA 233 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=4.6e-05 Score=59.86 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHCC
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGR-----------FDDVKKTRNLMKERG 506 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g 506 (569)
+.+++|+..++++++++|.++.+|..++.+|...|+ +++|.+.|++..+..
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 456889999999999999999999999999987764 688889998887644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.03 Score=49.72 Aligned_cols=264 Identities=10% Similarity=0.028 Sum_probs=146.8
Q ss_pred CCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 038890 114 NDTHSGKCLKLYKQMLCTGISPDCLTFPFLLKECTKRLDGLVGASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARM 193 (569)
Q Consensus 114 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 193 (569)
..+.++.|..+|..+. -|..++..+.+.++++.|.+++... + +..+|..+..++.+.....-+.-
T Consensus 26 ~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~~~l~~~~e~~la~i 90 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCFACVDGKEFRLAQM 90 (336)
T ss_dssp ---CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHHHHHHhCcHHHHHHH
Confidence 3455667777776553 3677888888999999888776533 2 56788888899988887766533
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHchhccccCCCC
Q 038890 194 LFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMK---KRNIFSWNSIITGFVQGGRAREALELFQEMQSSSVEEMVK 270 (569)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 270 (569)
+ ......+......++..|-..|.+++...+++... ..+...++.++..|++.+ .++..+.++... . .
T Consensus 91 ~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s-----~--~ 161 (336)
T d1b89a_ 91 C-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW-----S--R 161 (336)
T ss_dssp T-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS-----T--T
T ss_pred H-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcc-----c--c
Confidence 2 21122455556678999999999999999999764 345667889999998875 345555544431 1 1
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHH
Q 038890 271 PDKITIASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGTALVDMYGKCGCVERAYGVFKEMPKKDTLAWTAMISVFA 350 (569)
Q Consensus 271 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 350 (569)
-| ...+++.|...+.+++ ++..|.+.|+++.|..+.-.-.. +.......+..+.
T Consensus 162 y~---~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i~~~~-~~~~~~~f~e~~~ 215 (336)
T d1b89a_ 162 VN---IPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMMNHPT-DAWKEGQFKDIIT 215 (336)
T ss_dssp SC---HHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHHHSTT-TTCCHHHHHHHHH
T ss_pred CC---HHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHHHcch-hhhhHHHHHHHHH
Confidence 11 1223444444444443 45556666666666555433211 1111223344455
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHhHHhcCCCCCHhHHHHHH
Q 038890 351 LNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAH-------------SGLVEKGRWCFVMMRHVYLVEPHVYHYACMI 417 (569)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 417 (569)
+.++.+...++.....+. .| ...+.++..... .++......+++... .. .+..+.+++.
T Consensus 216 k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~-~~---n~~~vn~al~ 287 (336)
T d1b89a_ 216 KVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ-NH---NNKSVNESLN 287 (336)
T ss_dssp HCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHH-TT---CCHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHH-Hc---ChHHHHHHHH
Confidence 555555444444443331 22 222333333333 333333344444433 11 1234555666
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 038890 418 DILSRAGLFSEAERLIRS 435 (569)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~ 435 (569)
..|...++++.-.+..+.
T Consensus 288 ~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 288 NLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHhCcchhHHHHHHHHH
Confidence 666666665554444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.48 E-value=0.00023 Score=61.88 Aligned_cols=127 Identities=8% Similarity=-0.029 Sum_probs=72.6
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 038890 350 ALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEA 429 (569)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 429 (569)
.+.|++++|+..+++..+.. +-+...+..+...++..|++++|...|+...+.. +-+...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence 34577777777777777652 2245677777777777777777777777776432 22334444444444444444433
Q ss_pred HHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHH
Q 038890 430 ERLIRSM--PMEPD-VFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFY 479 (569)
Q Consensus 430 ~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 479 (569)
..-.... ...|+ ...+......+...|+.++|.+.++++.+..|..+..+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 3322221 11232 23333444556667777777777777777776655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.47 E-value=0.001 Score=53.80 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038890 412 HYACMIDILSRAGLFSEAERLIRSM-PMEP-DVFVWGALLGGCQMHGNVELGEKVAQYL 468 (569)
Q Consensus 412 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 468 (569)
.+..+..++.+.|++++|+..++.+ ...| +...|..++.++...|+.++|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444445555555555555555544 2233 3445555555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.43 E-value=0.0011 Score=52.49 Aligned_cols=90 Identities=10% Similarity=-0.010 Sum_probs=56.1
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC----------HhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC----
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPH----------VYHYACMIDILSRAGLFSEAERLIRSM--------PMEPD---- 441 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---- 441 (569)
+...|++++|+..|++..+...-.|+ ...|+.+..+|...|++++|...+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34455566665555555532211111 345666777777777777777666654 12222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 442 -VFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 442 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
...+..+..+|...|++++|+..|+++.++.|
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22566778888899999999999999887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.31 E-value=0.00015 Score=63.13 Aligned_cols=121 Identities=10% Similarity=0.007 Sum_probs=86.7
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038890 384 CAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM-PMEPDV-FVWGALLGGCQMHGNVELG 461 (569)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 461 (569)
..+.|++++|+..+++..+.. +.+...+..+...|+..|++++|...|+.. ...|+. ..+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 456799999999999999655 678899999999999999999999999998 556654 4555555554433333333
Q ss_pred HHHHHHHhhc-CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 462 EKVAQYLIDL-DPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 462 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
.......... .|++...+...+..+.+.|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2221111112 24444555666778899999999999999987643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00067 Score=48.32 Aligned_cols=66 Identities=9% Similarity=-0.159 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038890 441 DVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPL-------NHAFYVNLCDMYAKAGRFDDVKKTRNLMKERG 506 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 506 (569)
+...+..+...+.+.|++++|+..|+++.+..|. ...++..|+.+|.+.|++++|...++++.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3444567888999999999999999999876433 24678999999999999999999999998743
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.02 E-value=0.014 Score=42.06 Aligned_cols=141 Identities=10% Similarity=0.047 Sum_probs=101.6
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 038890 349 FALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSRAGLFSE 428 (569)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 428 (569)
+...|..++..+++.+.... .+..-|+.++--....-+.+...+.++.+-+.+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 44567778888887777653 2556677777666667777777777777765443322 233333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 038890 429 AERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAKAGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 429 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (569)
....+-.++ .+...+...+..+..+|+-++-.++++.+.+.+..+|.....++.+|.+.|...++.+++.+..++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 244556667788889999999999999988888788999999999999999999999999999999986
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.22 Score=46.47 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHch
Q 038890 209 MIIGYLRSGDLDVALDLFRRMKKRNIFSWNSIITGFVQGGRAREALELFQEMQ 261 (569)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 261 (569)
.+..+.+.++++..+..+..-+ .+...--....+....|+...|...+..+-
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW 129 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3445556666665554433211 122222344455666666666666665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.072 Score=38.80 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038890 441 DVFVWGALLGGCQMHG---NVELGEKVAQYLIDLDPLNH-AFYVNLCDMYAKAGRFDDVKKTRNLMKE 504 (569)
Q Consensus 441 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 504 (569)
...|-..+..++.++. +.++++.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.++++.+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3334444444444332 23455555555555555433 3445555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.20 E-value=0.15 Score=38.03 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCC
Q 038890 456 GNVELGEKVAQYLIDLDPLNHAFYVNLCDMYAK----AGRFDDVKKTRNLMKERGIR 508 (569)
Q Consensus 456 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 508 (569)
.|.++|.++|+++.+.+ ++.....|+..|.. ..+.++|.+++++..+.|..
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 46677777777777654 34566677777766 35788888888888777753
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.47 E-value=0.35 Score=35.92 Aligned_cols=112 Identities=10% Similarity=-0.167 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHHHHHH----cCCHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMIDILSR----AGLFSEA 429 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 429 (569)
|+++|+.+|++..+.|.. .....|. .....+.++|..+++...+ . -++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~-~---g~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhc-c---cchhhhhhHHHhhhhccccchhhHHH
Confidence 667888888887776632 2222222 2345678888888888774 3 345556666666654 4568889
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC
Q 038890 430 ERLIRSMPMEPDVFVWGALLGGCQM----HGNVELGEKVAQYLIDLDPL 474 (569)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 474 (569)
.++|++.-..-++.....|...|.. ..|.++|.++++++.+.+..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9988887112245555566666654 45888999999998887644
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.25 Score=35.80 Aligned_cols=73 Identities=10% Similarity=0.003 Sum_probs=53.4
Q ss_pred CCHhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHH
Q 038890 408 PHVYHYACMIDILSRAGL---FSEAERLIRSM-PMEP-DV-FVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYV 480 (569)
Q Consensus 408 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 480 (569)
+++.+--....++++... .++++.++++. ...| +. ..+..|.-+|.+.|+++.|.+.++++++++|.+..+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 455566666666766544 45777777777 2234 33 46777888899999999999999999999999876543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.35 E-value=0.93 Score=32.52 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=93.8
Q ss_pred HHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038890 318 YGKCGCVERAYGVFKEMPK-KDTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWC 396 (569)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 396 (569)
+.-.|..++..+++.+... .+..-||-+|.-....-+.+...++++..-+. + |. ...++.......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHHHHHH
Confidence 4456888888888887765 45666888888777788888888887776432 1 11 112222222222
Q ss_pred HHHhHHhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038890 397 FVMMRHVYLVEPHVYHYACMIDILSRAGLFSEAERLIRSM--PMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDP 473 (569)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 473 (569)
+-.+ ..+.......++.+...|+-+.-.++++.+ .-+|++.....+..+|.+.|+..++.+++.++-+.+.
T Consensus 79 ~~~~------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 79 GVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 2211 133445566677788888988888888884 5578888888899999999999999999988877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.03 E-value=8.1 Score=35.14 Aligned_cols=289 Identities=12% Similarity=-0.006 Sum_probs=158.2
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 038890 157 ASVYGQVVKFGVCDDVFVQNSVISLFMACGFVTSARMLFDEMSNRDVVSWNAMIIGYLRSGDLDVALDLFRRMKKRNIFS 236 (569)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 236 (569)
..++..+.+.|. .+...+-.-+......|+...|..+...+...........+..... ...+........ .+...
T Consensus 140 ~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~~~-~~~~~ 214 (450)
T d1qsaa1 140 DKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFT 214 (450)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHH
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhcCC-CChhh
Confidence 334444444442 2333333444555566777777777776655444444444444432 223333232222 22222
Q ss_pred HHHHHHHHHh--CCChHHHHHHHHHchhccccCCCCccHH-HH-HHHHHHHHccCCHHHHHHHHHHHHHhCCCCcchhHH
Q 038890 237 WNSIITGFVQ--GGRAREALELFQEMQSSSVEEMVKPDKI-TI-ASVLSACAYLGAIDHGKWVHGYLRRSGLDCDVVIGT 312 (569)
Q Consensus 237 ~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~p~~~-~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (569)
...+..++.+ ..+.+.+..++..... .....++.. .. ..+.......+..+.+...+......+ .+.....
T Consensus 215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 289 (450)
T d1qsaa1 215 RQMAAVAFASVARQDAENARLMIPSLAQ---AQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIE 289 (450)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHH
T ss_pred hHHHHHHHHHHhccChhHHHHHHHhhhh---cccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHH
Confidence 2222222222 3467788888877652 111222211 11 112222334566777777777665543 3444445
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038890 313 ALVDMYGKCGCVERAYGVFKEMPKK---DTLAWTAMISVFALNGYGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGL 389 (569)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 389 (569)
..+......+++..+...+..+... ......-+..++...|+.+.|...|...... ++ |-..+.+ .+.|.
T Consensus 290 w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~ 362 (450)
T d1qsaa1 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGE 362 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCC
Confidence 5666677789999999999998753 2334456778888999999999999987642 33 3333322 22221
Q ss_pred HHHHHHHHHHhHHhcCCC--CCH----hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038890 390 VEKGRWCFVMMRHVYLVE--PHV----YHYACMIDILSRAGLFSEAERLIRSMPMEPDVFVWGALLGGCQMHGNVELGEK 463 (569)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 463 (569)
.-. +. ....+ +.. ..-...+..+...|+...|...+..+-...+......+.....+.|.++.|+.
T Consensus 363 ~~~-------~~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~ 434 (450)
T d1qsaa1 363 EYE-------LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQ 434 (450)
T ss_dssp CCC-------CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCC-------CC-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHH
Confidence 100 00 00000 000 00113456677889999999888777223456666777888889999999998
Q ss_pred HHHHHhh
Q 038890 464 VAQYLID 470 (569)
Q Consensus 464 ~~~~~~~ 470 (569)
...++..
T Consensus 435 a~~~~~~ 441 (450)
T d1qsaa1 435 ATIAGKL 441 (450)
T ss_dssp HHHHTTC
T ss_pred HHHHHHc
Confidence 8777643
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.04 E-value=1.6 Score=29.51 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCHhHHHHHHH
Q 038890 354 YGKEAFDTFREMEAEGVRPNHVTFVGLLSACAHSGLVEKGRWCFVMMRHVYLVEPHVYHYACMID 418 (569)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (569)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 5556777788888888899999999999999999999999999999987664 34556666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.34 E-value=2.9 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhHHHHHH
Q 038890 436 MPMEPDVFVWGALLGGCQMHGNVELGEKVAQYLIDLDPLNHAFYVNLC 483 (569)
Q Consensus 436 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 483 (569)
+..-|++.+..+.+.+|.+.+|+..|.++++-++..--.+...|..++
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 366789999999999999999999999999988865433345666554
|