Citrus Sinensis ID: 038914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Protein Sequence
KPTSSISKNEPSYPTTTAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRHK
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHcHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHcHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
kptssisknepsypttTAKLKESLRLTVKDRASLETFLRERfkssgegdittitpndalcvfdymlnmrpsrppvtsfnILFGCLAKTKHYDTVLSLFKRlnstglfpdlyAYNILINCFlqngsslcVESRIMEAAALFTKLRvfgcepdvftyntLINGLCRTGHTIVALNLFEEmangngeigvvckpdtvtYTTIIDGLCKKGFVDKAKELFLKMkdeninpnavtYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRgvkpdtstyntlidgycltgKIDRARELFVSMEsngcmhdvVSYSILINGYCKTKDVEEGLNLYRKMLskgirptvvTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSslprvglmADVVTYNIMIHGLcndgqmdkaHGLFLdmeakglepnfVIFNTLMLGFIRNNETSKVIELLHRMdmrnvmpdasTLSIVVDLLVKNEislnsipqfkrhk
Flexible Loop (DISEMBL)
kptssisknepsyptttaklkeslrltvkdRASLETflrerfkssgegdittitpnDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKmkdeninpNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRgvkpdtstyntlIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNeislnsipqfkrhk
Low Complexity Region (SEG)
KPTSSISKNEPSYPTTTAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRHK
Disordered region (IsUnstruct)
***********************************TFL*********GDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISL**********
Disordered Region (DISOPRED)
***********SYPTTTAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRHK
Disordered Region (DISEMBL)
***************TTAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRHK
Disordered Region (DISPRO)
******SKNEPSYPTTTAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRHK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KPTSSISKNEPSYPTTTAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	570	2.2.26 [Sep-21-2011]
P0C7Q7	602	Putative pentatricopeptid	yes	no	0.894	0.847	0.357	1e-102
Q0WKV3	637	Pentatricopeptide repeat-	no	no	0.891	0.797	0.365	3e-98
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.861	0.780	0.360	3e-97
Q9ASZ8	621	Pentatricopeptide repeat-	no	no	0.894	0.821	0.358	3e-95
Q3ECK2	548	Pentatricopeptide repeat-	no	no	0.794	0.826	0.389	6e-95
Q9LPX2	644	Pentatricopeptide repeat-	no	no	0.892	0.790	0.350	4e-94
Q9SXD1	630	Pentatricopeptide repeat-	no	no	0.843	0.763	0.370	2e-93
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.889	0.802	0.343	2e-93
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.821	0.762	0.365	6e-93
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.884	0.814	0.339	3e-92

>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/549 (35%), Positives = 306/549 (55%), Gaps = 39/549 (7%)

Query: 38  LRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL 97
            RER +S     I  I  +DA+ +F  M+  RP  P +  F+  F  +A+TK ++ VL  
Sbjct: 56  FRERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDF 110

Query: 98  FKRLNSTGLFPDLYAYNILINCFLQNGSS----------------------------LCV 129
            K+L   G+  ++Y  NI+INCF +   +                            L +
Sbjct: 111 CKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFL 170

Query: 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC 189
           E ++ EA  L  ++   GC+PDV TYN+++NG+CR+G T +AL+L  +M   N       
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------V 224

Query: 190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKH 249
           K D  TY+TIID LC+ G +D A  LF +M+ + I  + VTY SL+ G C A  WN+   
Sbjct: 225 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 284

Query: 250 LFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC 309
           L  +M+ + + PNV+TF V++D   K GK+  A+ L + MI RG+ P+  TYNTL+DGYC
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 310 LTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV 369
           +  ++  A  +   M  N C  D+V+++ LI GYC  K V++G+ ++R +  +G+    V
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL 429
           TY  L  G  +  +++ A +LF EM  + V  +   Y   +DGLC NG + KA+E+F  L
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 430 RILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM 489
           +  K +L IV Y  +I+G+CK G++E AW LF SLP  G+  +V+TY +MI GLC  G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524

Query: 490 DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIV 549
            +A+ L   ME  G  PN   +NTL+   +R+ + +   +L+  M       DAS++ +V
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584

Query: 550 VDLLVKNEI 558
           +D+L+  E+
Sbjct: 585 IDMLLSGEL 593

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1

 Score =  359 bits (922), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 309/574 (53%), Gaps = 66/574 (11%)

Query: 39  RERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 98
           RER +S     +  I  +DA+ +F  M++ RP  P V  F+ LF  +AKTK YD VL+L 
Sbjct: 57  RERLRSG----LVDIKADDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALC 111

Query: 99  KRLNSTGLFPDLYAYNILINCF------------------------------LQNGSSLC 128
           K++   G+  +LY  +I+INCF                              L NG  LC
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLING--LC 169

Query: 129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE---- 184
           +E R+ EA  L  ++   G +PD+ T NTL+NGLC +G    A+ L ++M     +    
Sbjct: 170 LEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAV 229

Query: 185 -----IGVVCKP--------------------DTVTYTTIIDGLCKKGFVDKAKELFLKM 219
                + V+CK                     D V Y+ IIDGLCK G +D A  LF +M
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289

Query: 220 KDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKM 279
           + + I  N +TY  LI GFC A  W++   L  +M+ + + PNVVTF+V++D   K GK+
Sbjct: 290 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 349

Query: 280 DGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSIL 339
             A  L + MI RG+ PDT TY +LIDG+C    +D+A ++   M S GC  ++ +++IL
Sbjct: 350 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV 399
           INGYCK   +++GL L+RKM  +G+    VTY+TL  G  E+ ++  A +LF EM    V
Sbjct: 410 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 469

Query: 400 AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE 459
             N   Y   +DGLC NG   KA+E+F  +   K EL+I  YN +I G+C   +++ AW+
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529

Query: 460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI 519
           LF SLP  G+   V TYNIMI GLC  G + +A  LF  ME  G  P+   +N L+   +
Sbjct: 530 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 589

Query: 520 RNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553
            + + +K ++L+  +       DAST+ +V+D+L
Sbjct: 590 GDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  356 bits (914), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 304/561 (54%), Gaps = 70/561 (12%)

Query: 56  NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNI 115
           +DA+ +F  M+  RP  P +  FN L   +AK   +D V+SL +R+ +  +  DLY+YNI
Sbjct: 62  DDAVDLFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 116 LINCFLQNG------------------------SSL----CVESRIMEAAALFTKLRVF- 146
           LINCF +                          SSL    C   RI EA AL  ++ V  
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 147 ----------------------------------GCEPDVFTYNTLINGLCRTGHTIVAL 172
                                             GC+PD+FTY T++NGLC+ G   +AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 173 NLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT 232
           +L ++M  G  E       D V YTTIID LC    V+ A  LF +M ++ I PN VTY 
Sbjct: 241 SLLKKMEKGKIE------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294

Query: 233 SLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR 292
           SLI   C    W++A  L  +M+++ + PNVVTF+ ++D   K GK+  A +L + MI R
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 293 GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEG 352
            + PD  TY++LI+G+C+  ++D A+ +F  M S  C  +VV+Y+ LI G+CK K VEEG
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414

Query: 353 LNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDG 412
           + L+R+M  +G+    VTY+TL  GLF+    + A K+F +M  + V  +   Y+  +DG
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474

Query: 413 LCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD 472
           LCK G + KA+ +F  L+  K E +I +YN +I+G+CK G++E  W+LF SL   G+  +
Sbjct: 475 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534

Query: 473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLH 532
           V+ Y  MI G C  G  ++A  LF +M+  G  PN   +NTL+   +R+ + +   EL+ 
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 594

Query: 533 RMDMRNVMPDASTLSIVVDLL 553
            M     + DAST+S+V+++L
Sbjct: 595 EMRSCGFVGDASTISMVINML 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1

 Score =  350 bits (897), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 205/572 (35%), Positives = 301/572 (52%), Gaps = 62/572 (10%)

Query: 39  RERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 98
           RER +S     I  I  +DA+ +F  M   RP RP +  F+ LF  +A+TK YD VL L 
Sbjct: 41  RERLRSG----IVDIKEDDAVDLFQEMTRSRP-RPRLIDFSRLFSVVARTKQYDLVLDLC 95

Query: 99  KRLNSTGLFPDLYAYNILINC----------FLQNG------------------SSLCVE 130
           K++   G+  +LY  +I+INC          F   G                  + LC+E
Sbjct: 96  KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155

Query: 131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------ 184
            R+ EA  L  ++   G +P + T N L+NGLC  G    A+ L + M     +      
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215

Query: 185 ---IGVVCKP--------------------DTVTYTTIIDGLCKKGFVDKAKELFLKMKD 221
              + V+CK                     D V Y+ IIDGLCK G +D A  LF +M+ 
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275

Query: 222 ENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG 281
           +    + + YT+LI GFCYA  W++   L  +M+ + + P+VV F+ ++D   K GK+  
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN 341
           A  L + MI RG+ PDT TY +LIDG+C   ++D+A  +   M S GC  ++ +++ILIN
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395

Query: 342 GYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAA 401
           GYCK   +++GL L+RKM  +G+    VTY+TL  G  E+ ++E A +LF EM    V  
Sbjct: 396 GYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRP 455

Query: 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELF 461
           +   Y   +DGLC NG   KA+E+F  +   K EL+I  YN +I G+C   +++ AW+LF
Sbjct: 456 DIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 515

Query: 462 SSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN 521
            SLP  G+  DV TYNIMI GLC  G + +A  LF  ME  G  PN   +N L+   +  
Sbjct: 516 CSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGE 575

Query: 522 NETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553
            + +K  +L+  +       DAST+ +VVD+L
Sbjct: 576 GDATKSAKLIEEIKRCGFSVDASTVKMVVDML 607

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2

 Score =  348 bits (894), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 183/470 (38%), Positives = 275/470 (58%), Gaps = 17/470 (3%)

Query: 38  LRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL 97
           LRER   +   DI     NDA+ +F  M+  RP  P +  FN L   + K K YD V+SL
Sbjct: 52  LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPF-PSIVDFNRLLSAIVKLKKYDVVISL 107

Query: 98  FKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNT 157
            K++   G+  DLY +NI+INCF       C   ++  A ++  K+   G EPD  T  +
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCF-------CCCFQVSLALSILGKMLKLGYEPDRVTIGS 160

Query: 158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL 217
           L+NG CR      A++L ++M     EIG   KPD V Y  IID LCK   V+ A + F 
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMV----EIGY--KPDIVAYNAIIDSLCKTKRVNDAFDFFK 214

Query: 218 KMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG 277
           +++ + I PN VTYT+L+ G C ++ W++A  L  +M+ + + PNV+T++ ++D   KNG
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNG 274

Query: 278 KMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYS 337
           K+  A  L E M+   + PD  TY++LI+G CL  +ID A ++F  M S GC+ DVVSY+
Sbjct: 275 KVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYN 334

Query: 338 ILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN 397
            LING+CK K VE+G+ L+R+M  +G+    VTY+TL  G F+   V+ A + F +M   
Sbjct: 335 TLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF 394

Query: 398 HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIA 457
            ++ + + Y   + GLC NG + KA+ +F  ++  + +L+IV+Y  +I G+CK G++E A
Sbjct: 395 GISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEA 454

Query: 458 WELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN 507
           W LF SL   GL  D+VTY  M+ GLC  G + +   L+  M+ +GL  N
Sbjct: 455 WSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1

 Score =  345 bits (886), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 305/574 (53%), Gaps = 65/574 (11%)

Query: 44  SSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNS 103
           SSG   +  I  +DA+ +F  M+  RP  P V  FN LF  +AKTK Y+ VL+L K++ S
Sbjct: 61  SSG---LVGIKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116

Query: 104 TGLFPDLYAYNILINCF------------------------------LQNGSSLCVESRI 133
            G+   +Y  +I+INCF                              L NG  LC+E R+
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNG--LCLECRV 174

Query: 134 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE--------- 184
            EA  L  ++   G +P + T NTL+NGLC  G    A+ L + M     +         
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPV 234

Query: 185 IGVVCKP--------------------DTVTYTTIIDGLCKKGFVDKAKELFLKMKDENI 224
           + V+CK                     D V Y+ IIDGLCK G +D A  LF +M+ +  
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294

Query: 225 NPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR 284
             + +TY +LI GFC A  W++   L  +M+ + + PNVVTF+V++D   K GK+  A +
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354

Query: 285 LLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYC 344
           LL+ M+ RG+ P+T TYN+LIDG+C   +++ A ++   M S GC  D+++++ILINGYC
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414

Query: 345 KTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTY 404
           K   +++GL L+R+M  +G+    VTY+TL  G  +  ++E A KLF EM    V  +  
Sbjct: 415 KANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIV 474

Query: 405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSL 464
            Y   +DGLC NG + KA+E+F  +   K EL+I  Y  +I G+C   +++ AW+LF SL
Sbjct: 475 SYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSL 534

Query: 465 PRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNET 524
           P  G+  D   YNIMI  LC    + KA  LF  M  +G  P+ + +N L+   + +++ 
Sbjct: 535 PLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDA 594

Query: 525 SKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEI 558
           +   EL+  M       D ST+ +V+++L   E+
Sbjct: 595 TTAAELIEEMKSSGFPADVSTVKMVINMLSSGEL 628

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2

 Score =  343 bits (880), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/497 (37%), Positives = 282/497 (56%), Gaps = 16/497 (3%)

Query: 58  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
           AL V   M+ +    P + + + L      +K     ++L  ++  TG  P+   +N LI
Sbjct: 135 ALAVLGKMMKL-GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193

Query: 118 N-CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE 176
           +  FL N +S        EA AL  ++   GC+PD+ TY  ++NGLC+ G T +A NL  
Sbjct: 194 HGLFLHNKAS--------EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245

Query: 177 EMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC 236
           +M  G  E GV+       Y TIIDGLCK   +D A  LF +M+ + I PN VTY+SLI 
Sbjct: 246 KMEQGKLEPGVL------IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP 296
             C    W++A  L  +M+++ + P+V TF+ ++D   K GK+  A +L + M+ R + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLY 356
              TY++LI+G+C+  ++D A+++F  M S  C  DVV+Y+ LI G+CK K VEEG+ ++
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query: 357 RKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN 416
           R+M  +G+    VTY+ L  GLF+    + A ++F EM  + V  N   Y T +DGLCKN
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY 476
           G + KA+ +F  L+  K E  I +YN +I+G+CK G++E  W+LF +L   G+  DVV Y
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539

Query: 477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536
           N MI G C  G  ++A  LF +M+  G  PN   +NTL+   +R+ +     EL+  M  
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599

Query: 537 RNVMPDASTLSIVVDLL 553
                DAST+ +V ++L
Sbjct: 600 CGFAGDASTIGLVTNML 616

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  343 bits (880), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/586 (34%), Positives = 300/586 (51%), Gaps = 79/586 (13%)

Query: 40  ERFKSSGEGDITTITPN---------DALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH 90
           ER  +S  GD   I  N         DA+ +F  M+  RP  P +  FN L   +AK   
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPF-PSIVEFNKLLSAVAKMNK 98

Query: 91  YDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG------------------------SS 126
           ++ V+SL +++ + G+  DLY Y+I INCF +                          SS
Sbjct: 99  FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 127 L----CVESRIMEAAALFTKLRVFG----------------------------------- 147
           L    C   RI +A AL  ++   G                                   
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 148 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG 207
           C+PD+ TY T++NGLC+ G   +AL+L ++M  G  E       D V Y TIIDGLCK  
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE------ADVVIYNTIIDGLCKYK 272

Query: 208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFT 267
            +D A  LF +M ++ I P+  TY+SLI   C    W++A  L  +M+++ + PNVVTF+
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFS 332

Query: 268 VIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN 327
            ++D   K GK+  A +L + MI R + PD  TY++LI+G+C+  ++D A+ +F  M S 
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392

Query: 328 GCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHA 387
            C  +VV+YS LI G+CK K VEEG+ L+R+M  +G+    VTY TL  G F+    ++A
Sbjct: 393 DCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 452

Query: 388 LKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG 447
             +F +M    V  N   Y   +DGLCKNG + KA+ +F  L+    E +I +YN +I+G
Sbjct: 453 QMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEG 512

Query: 448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN 507
           +CK G++E  WELF +L   G+  +V+ YN MI G C  G  ++A  L   M+  G  PN
Sbjct: 513 MCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPN 572

Query: 508 FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553
              +NTL+   +R+ +     EL+  M       DAST+ +V ++L
Sbjct: 573 SGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 618

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  342 bits (876), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 176/481 (36%), Positives = 271/481 (56%), Gaps = 13/481 (2%)

Query: 73  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR 132
           P + + N L             ++L  ++   G  PD   +  L++   Q+       ++
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH-------NK 185

Query: 133 IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD 192
             EA AL  ++ V GC+PD+ TY  +INGLC+ G   +ALNL  +M  G  E       D
Sbjct: 186 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE------AD 239

Query: 193 TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFI 252
            V Y+T+ID LCK   VD A  LF +M ++ I P+  TY+SLI   C    W++A  L  
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 299

Query: 253 EMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTG 312
           +M+++ + PNVVTF  ++D   K GK+  A +L + MI R + P+  TYN+LI+G+C+  
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359

Query: 313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH 372
           ++D A+++F  M S  C+ DVV+Y+ LING+CK K V +G+ L+R M  +G+    VTY 
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419

Query: 373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL 432
           TL  G F+    ++A  +F +M  + V  N   Y T +DGLCKNG + KA+ +F  L+  
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479

Query: 433 KYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKA 492
           K E +I +YN + +G+CK G++E  W+LF SL   G+  DV+ YN MI G C  G  ++A
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539

Query: 493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDL 552
           + LF+ M+  G  P+   +NTL+   +R+ + +   EL+  M       DAST  +V D+
Sbjct: 540 YTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDM 599

Query: 553 L 553
           L
Sbjct: 600 L 600

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  339 bits (870), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/578 (33%), Positives = 297/578 (51%), Gaps = 74/578 (12%)

Query: 39  RERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVL--- 95
           +ER ++     I  I  NDA+ +F+ M+  RP   P+  FN L   +A+TK YD VL   
Sbjct: 39  KERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFC 93

Query: 96  --------------------------------SLFKRLNSTGLFPDLYAYNILINCFLQN 123
                                           S+  R    G  PD   ++ L+N F   
Sbjct: 94  KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 153

Query: 124 G----------------------------SSLCVESRIMEAAALFTKLRVFGCEPDVFTY 155
           G                            + LC++ R+ EA  L  ++  +G +PD  TY
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213

Query: 156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKEL 215
             ++N LC++G++ +AL+LF +M   N       K   V Y+ +ID LCK G  D A  L
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSL 267

Query: 216 FLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK 275
           F +M+ + I  + VTY+SLI G C    W++   +  EM+ + + P+VVTF+ ++D   K
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327

Query: 276 NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVS 335
            GK+  A  L   MI RG+ PDT TYN+LIDG+C    +  A ++F  M S GC  D+V+
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387

Query: 336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR 395
           YSILIN YCK K V++G+ L+R++ SKG+ P  +TY+TL LG  +  ++  A +LF EM 
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447

Query: 396 RNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLE 455
              V  +   Y   +DGLC NG + KA+E+F  ++  +  L I  YN +I G+C   +++
Sbjct: 448 SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVD 507

Query: 456 IAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLM 515
            AW LF SL   G+  DVVTYN+MI GLC  G + +A  LF  M+  G  P+   +N L+
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567

Query: 516 LGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL 553
              +  +     +EL+  M +     D+ST+ +V+D+L
Sbjct: 568 RAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
359479583	627	PREDICTED: pentatricopeptide repeat-cont	0.949	0.862	0.490	1e-150
449529622	618	PREDICTED: pentatricopeptide repeat-cont	0.989	0.912	0.454	1e-143
449520325	605	PREDICTED: pentatricopeptide repeat-cont	0.907	0.854	0.468	1e-136
255559961	628	pentatricopeptide repeat-containing prot	0.905	0.821	0.456	1e-132
449520323	605	PREDICTED: pentatricopeptide repeat-cont	0.952	0.897	0.436	1e-129
449462477	597	PREDICTED: pentatricopeptide repeat-cont	0.933	0.891	0.432	1e-124
449462479	580	PREDICTED: pentatricopeptide repeat-cont	0.884	0.868	0.448	1e-120
449444228	585	PREDICTED: pentatricopeptide repeat-cont	0.931	0.907	0.419	1e-114
449444222	588	PREDICTED: pentatricopeptide repeat-cont	0.854	0.828	0.435	1e-110
449491568	412	PREDICTED: pentatricopeptide repeat-cont	0.707	0.978	0.469	1e-102

>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/577 (49%), Positives = 370/577 (64%), Gaps = 36/577 (6%)

Query: 9   NEPSYPTTTAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDALCVFDYMLNM 68
           + P  P   +  K+++     DR  LE FL+   KS        I  ++A  VF+++++M
Sbjct: 34  HRPISPGPISLTKDTVS-NAPDRGQLENFLKSNCKSG------HIKRSEAFSVFNHLIDM 86

Query: 69  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF-------- 120
           +P+ PP++SFN L G +AK K Y  V+SL+KR++  GL PD    NILINC+        
Sbjct: 87  QPT-PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDF 145

Query: 121 --------LQNGSS------------LCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN 160
                   L+ G S            LC+ SRI EA  L  K+   G  P+V TY TL+N
Sbjct: 146 GLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLN 205

Query: 161 GLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMK 220
           GLC TG+T++A+ L EEM NGNG  GV  KP+ V Y TIID LCK G +DK KELFL+MK
Sbjct: 206 GLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMK 265

Query: 221 DENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMD 280
              I+P+ V Y+S+I G C+   W  AK LF EM+D+GV PNVVTF V++D LCK GKM+
Sbjct: 266 GRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKME 325

Query: 281 GASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILI 340
            A+ LL+LMI RG  PDT TYNTLIDG+CL G+ID AR+LFVSMES G   D VSY++LI
Sbjct: 326 EANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLI 385

Query: 341 NGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVA 400
           NGYCK+  + E   LYR+M+ K I PTV+TY+TL  GLF   +V  A  LF EM+ + + 
Sbjct: 386 NGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLT 445

Query: 401 ANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWEL 460
             +  Y   +DGLCKN ++ +A+ELF  L    ++ +I  +NCLIDGLCK  ++EIA EL
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505

Query: 461 FSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR 520
           F+ L   GL  +V+TY +MIHGLC  GQ++ A  LFL ME KG  PN V FNTLM GF +
Sbjct: 506 FNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQ 565

Query: 521 NNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNE 557
           N+E  KV+ELL  M  ++  PDAST+SIVVDLL K+E
Sbjct: 566 NDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDE 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/605 (45%), Positives = 378/605 (62%), Gaps = 41/605 (6%)

Query: 2   PTSSISKNEPS-YPTTTAKLKESLRLTV---KDRASLETFLRERFKSSGEGDITTITPND 57
           P S+ S   PS  P T++    +  L     ++  S    L    ++   G+IT I    
Sbjct: 18  PLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKTGNITAI---Q 74

Query: 58  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
           A   FD M+   P  PP++SFN L G LAK  HY  + SL+  +   GL PDL+  +IL 
Sbjct: 75  AFHFFDLMMRSHPI-PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILA 133

Query: 118 NCF----------------LQNG------------SSLCVESRIMEAAALFTKLRVFGCE 149
           NC                 L+ G              LC+E RI EA  LF +++  GC 
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209
           P+  TY TLI GLC+TG+  +AL L +EM N   + GV CKP  +TY+ IIDGLCK G  
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI 269
           D+AKELF +MK + + P+ ++Y++LI GFC A  W+++KHLF EM+DQGVQP++VTF+V+
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 270 MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGC 329
           +D LCK GK+  A +LLE+MI RG+ P+  TYN+LIDG+C+ G ++ ARELF+SM S G 
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL 373

Query: 330 MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALK 389
             D +SY+ LINGYCKT  V+E +NLY +ML  G  P V TY TL  GLF+  +V  A K
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK 433

Query: 390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC 449
           LF  M+   V+AN+ IY  F+DGLCKN  + +A+ELF  L+   ++LNI +Y+CLIDGLC
Sbjct: 434 LFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLC 493

Query: 450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV 509
           K G+LE AWELF  L + GL  DVVTYNIMIHG C  GQ+D A+ LF  ME  G  P+ +
Sbjct: 494 KAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDII 553

Query: 510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEIS---LNSIPQF 566
            +NTL+ GF   N+  +VI+LLH+M  ++V P+A++ +IVVD+L K+E     ++ +P+F
Sbjct: 554 AYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKF 613

Query: 567 --KRH 569
             +RH
Sbjct: 614 PVQRH 618

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/549 (46%), Positives = 347/549 (63%), Gaps = 32/549 (5%)

Query: 53  ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA 112
           +T   AL  F  M+   P+ P ++SFN L   LAK KHY  V SL+ ++  +GL  D   
Sbjct: 48  VTATHALHFFHLMMRSTPT-PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106

Query: 113 YNILINCF----------------LQNGSS------------LCVESRIMEAAALFTKLR 144
            NIL+NC                 L+ G S            LC+E RI EA  LF +++
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 145 VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC 204
             GC PDV TY TLI GLC TG+  +AL L +EM N      + CKP+ +TY  I+DGLC
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 205 KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVV 264
           K G  D+AK+LF +MK + + P+ ++Y SLI GFC A  W E+K L  EM+DQG+QP++V
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMV 286

Query: 265 TFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSM 324
           TF V++D LCK GK+  A +LL +MI  G+ PD  TYN+LI+G+C+ G ++ ARELFVSM
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346

Query: 325 ESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQV 384
            S GC  DV+SY++LINGY KT  VEE + LY +ML  G RP V+TY +L  G+F   +V
Sbjct: 347 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKV 406

Query: 385 EHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCL 444
           + A KLF  M+ + +A N+Y Y  F+DGLCKN  + +A++LF  L+   ++L I + NCL
Sbjct: 407 DDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCL 466

Query: 445 IDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL 504
           IDGLCK G+LE AWELF  L   G   +VVTY IMIHG C +GQ+DKA+ L   MEA G 
Sbjct: 467 IDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 526

Query: 505 EPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEI---SLN 561
            P+ + +NTLM GF  +N+  +V++LLHRM  ++V PDA T SIVVD+L K+E     L+
Sbjct: 527 TPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLH 586

Query: 562 SIPQFKRHK 570
            +P+F   K
Sbjct: 587 LLPRFPIQK 595

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/567 (45%), Positives = 353/567 (62%), Gaps = 51/567 (8%)

Query: 34  LETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT 93
           LE FL    KS   GD T    ++AL  F+ M++M+ + P ++ FN LFG LAK K Y  
Sbjct: 73  LEQFLEINCKS---GDFTL---HEALHFFNQMIHMQTT-PALSRFNNLFGALAKKKQYLH 125

Query: 94  VLSLFKRLNSTGLFPDLYAYNILINCF----------------LQNG------------S 125
           V+S+  R+NS GL  +  + NIL+NC                 L+ G             
Sbjct: 126 VISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVK 185

Query: 126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI 185
            LC+E +I EA  +F  + VF C P   T   LI+GLCRTG+T  AL L E M NGN + 
Sbjct: 186 GLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDF 245

Query: 186 GVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWN 245
           G+ CKP  V+Y+ IID LCK G V++AKE F++MK++ I PN VTYTSL+ G C A++W 
Sbjct: 246 GINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWE 305

Query: 246 EAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLI 305
           EAK LFIEM+D G+ P+VVTF+V++  LCK GK+  AS L +LM+ R V+P T TYN LI
Sbjct: 306 EAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365

Query: 306 DGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR 365
           +GYCL G +D  +++F+SM +  C HD  SYSIL+  YCK  +V   + LYR+M+ +GI+
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQ 425

Query: 366 PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTY---IYTTFIDGLCKNGYIVKA 422
           PTV+TY           +V  A KLF E++   +  ++    IY  ++DGLCKNG + +A
Sbjct: 426 PTVITY----------SKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEA 475

Query: 423 VELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG 482
           +++F  L   K+  N+  +N LI+G+C+  +LEIAWELF+ L    L  DVVTY IMI+G
Sbjct: 476 LDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYG 535

Query: 483 LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD 542
           LC  GQ  KA+ LFL+ME KG  PN V FNTLM G   N+E  K++ELLH+M  R + PD
Sbjct: 536 LCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPD 595

Query: 543 ASTLSIVVDLLVKNE---ISLNSIPQF 566
           ASTL IV+D+L+K+E     LN +P F
Sbjct: 596 ASTLLIVMDILLKDENYHECLNLLPTF 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/577 (43%), Positives = 346/577 (59%), Gaps = 34/577 (5%)

Query: 3   TSSISKNEPSYPTT-----TAKLKESLRLTVKDRASLETFLRERFKSSGEGDITTITPND 57
           +SS+  + P+ P++     +A   +SL ++ ++  +  +F ++            IT   
Sbjct: 20  SSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITATQ 79

Query: 58  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
           A   F  M+   P+ PP++SF  L   LAK KHY  V  L+ ++  +G+ PD    NIL+
Sbjct: 80  AFQFFHLMMYSNPT-PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 118 NCF----------------LQNG------------SSLCVESRIMEAAALFTKLRVFGCE 149
           NC                 L+ G              LC+E RI +AA LFT+++  GC 
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209
           P+  TY TL+ GLCRTG+  +AL L +EM N +   G+  KP  ++Y+ IID LCK    
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258

Query: 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI 269
           D+A++LF +MK + + P  ++YTSLI GFC    W EAK LF EM++QGVQPNVVTF V+
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVL 318

Query: 270 MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGC 329
           +D LCK GK+  A  LLE+MI RG+ P+  TYN+LI+G+CL G ++ ARELFVSM S GC
Sbjct: 319 IDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC 378

Query: 330 MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALK 389
             DV+ Y++LINGYCKT  VEE + LY  ML  G RP V TY  L  GLF+  +V  A K
Sbjct: 379 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 438

Query: 390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC 449
           LF  M+   +  + YIY  F++GLCKNG + +A+ELF  L+    +L+I  +NCLIDGLC
Sbjct: 439 LFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLC 498

Query: 450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV 509
           K G+LE AWELF  LP+  L  DVVTYNIMIH  C  GQ+ KA+ LF  ME  G  P+ +
Sbjct: 499 KAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKI 558

Query: 510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTL 546
            + TL+ GF  + +  KV+ELLH M  R+V  D + L
Sbjct: 559 TYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNIL 595

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/580 (43%), Positives = 345/580 (59%), Gaps = 48/580 (8%)

Query: 3   TSSISKNEPSYPTT-----TAKLKESLRLTVKD---RASLETFLRERFKSSGEGDITTIT 54
           +SS+  + P+ P++     +A   +SL ++ ++     S +  L     +   G+IT I 
Sbjct: 20  SSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITAI- 78

Query: 55  PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYN 114
              A   F  M+   P+ PP++SF  L   LAK KHY  V  L+ ++  +G+ PD    N
Sbjct: 79  --QAFQFFHLMMYSNPT-PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135

Query: 115 ILINCF----------------LQNG------------SSLCVESRIMEAAALFTKLRVF 146
           IL+NC                 L+ G              LC+E RI +AA LFT+++  
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 147 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK 206
           GC P+  TY TL+ GLCRTG+  +AL L +EM N +   G+  KP  ++Y+ IID LCK 
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255

Query: 207 GFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF 266
              D+A++LF +MK + + P  ++YTSL+        W EAK LF EM++QGVQPNVVTF
Sbjct: 256 RREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTF 307

Query: 267 TVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMES 326
            V++D LCK GK+  A  LLE+MI RG+ P+  TYN+LI+G+CL G ++ ARELFVSM S
Sbjct: 308 NVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPS 367

Query: 327 NGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEH 386
            GC  DV+ Y++LINGYCKT  VEE + LY  ML  G RP V TY  L  GLF+  +V  
Sbjct: 368 KGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGD 427

Query: 387 ALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID 446
           A KLF  M+   +  + YIY  F++GLCKNG + +A+ELF  L+    +L+I  +NCLID
Sbjct: 428 AKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLID 487

Query: 447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP 506
           GLCK G+LE AWELF  LP+  L  DVVTYNIMIH  C  GQ+ KA+ LF  ME  G  P
Sbjct: 488 GLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTP 547

Query: 507 NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTL 546
           + + + TL+ GF  + +  KV+ELLH M  R+V  D + L
Sbjct: 548 DKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNIL 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/537 (44%), Positives = 328/537 (61%), Gaps = 33/537 (6%)

Query: 53  ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA 112
           +T   AL  F  M+   P+ P ++SFN L   LAK KHY  V SL+ ++  +GL  D   
Sbjct: 48  VTATHALHFFHLMMRSTPT-PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106

Query: 113 YNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVAL 172
            NIL+NC       LC  +R+ E  A F  +   G  P++ TYNTLI GLC       A 
Sbjct: 107 LNILLNC-------LCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEAT 159

Query: 173 NLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE------NINP 226
            LF  M     ++G  C PD VTY T+I GLC  G ++ A +L  +M ++      N  P
Sbjct: 160 RLFLRMQ----KLG--CTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKP 213

Query: 227 NAVTYTSLICGFCYANDWNEAKHLFIEM----------MDQGVQPNVVTFTVIMDELCKN 276
           N +TY  ++ G C     +EAK LF EM          +DQG+QP++VTF V++D LCK 
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKE 273

Query: 277 GKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSY 336
           GK+  A +LL +MI  G+ PD  TYN+LI+G+C+ G ++ ARELFVSM S GC  DV+SY
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333

Query: 337 SILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRR 396
           ++LINGY KT  VEE + LY +ML  G RP V+TY +L  G+F   +V+ A KLF  M+ 
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 393

Query: 397 NHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEI 456
           + +A N+Y Y  F+DGLCKN  + +A++LF  L+   ++L I + NCLIDGLCK G+LE 
Sbjct: 394 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 453

Query: 457 AWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML 516
           AWELF  L   G   +VVTY IMIHG C +GQ+DKA+ L   MEA G  P+ + +NTLM 
Sbjct: 454 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 513

Query: 517 GFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEI---SLNSIPQFKRHK 570
           GF  +N+  +V++LLHRM  ++V PDA T SIVVD+L K+E     L+ +P+F   K
Sbjct: 514 GFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQK 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/565 (41%), Positives = 338/565 (59%), Gaps = 34/565 (6%)

Query: 4   SSISKNEPSYPTTTAKLK-----ESLRLTVKDRASLETFLRERFKSSGEGDITTITPNDA 58
           SS+  + P+ P++  ++      +SL   + +R SL+  L     +  +G+IT+     A
Sbjct: 25  SSLFTHSPTIPSSNPQISSANHPKSLH-ALSERISLQHGLPMFIHNCKKGNITS---TQA 80

Query: 59  LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN 118
           L  FD M+        + SFN+L G LAK KHY  V SL+K+++  GL P+ +  NILIN
Sbjct: 81  LQFFDLMMR------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILIN 134

Query: 119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM 178
           C       LC  +R+ E  +    +   G  PDV TY +LI GLC       A  LF  M
Sbjct: 135 C-------LCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRM 187

Query: 179 ANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE------NINPNAVTYT 232
                ++G  C P+ VTY T+I GLC+ G ++ A +L  +M +       N  PN  +Y 
Sbjct: 188 Q----KLG--CWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYN 241

Query: 233 SLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR 292
            +I   C    W EAK LF EM+DQGV+P+VVTF+ ++D LCK G +  A + LE M+LR
Sbjct: 242 IIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLR 301

Query: 293 GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEG 352
           G+ PD  T+ +LI+G+CL G +D A+ELF+SM S G   DV+SY++LI GYCKT +VEE 
Sbjct: 302 GIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEA 361

Query: 353 LNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDG 412
           + LY +ML  G  P + T+  L  GLF   +V  A KLF  ++ + V  N YI + F+DG
Sbjct: 362 MKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDG 421

Query: 413 LCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD 472
           LCKNG + +A+ELF  L+    +L+I S+NCLIDGLCK  +LE AWELF  L + GL  D
Sbjct: 422 LCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPD 481

Query: 473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLH 532
           VVTY IMI+G C +GQ+D A+ LF  ME  G  PN + ++ L+ GF +NN+  +V++LLH
Sbjct: 482 VVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLH 541

Query: 533 RMDMRNVMPDASTLSIVVDLLVKNE 557
           +M  ++V   AS  +IV D++ K+E
Sbjct: 542 KMIQKDVSLAASIYTIVEDMVSKDE 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/512 (43%), Positives = 308/512 (60%), Gaps = 25/512 (4%)

Query: 52  TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 111
           +I+   A   FD M+        + SFN L   LAK +HY  V SL+K+++  GL+PDL 
Sbjct: 74  SISVTQAHQFFDLMMR------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLL 127

Query: 112 AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA 171
             NILINC       LC  +RI E  A    +   G  PDV T+ TLI GLC     I A
Sbjct: 128 TLNILINC-------LCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEA 180

Query: 172 LNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE------NIN 225
             LF  M     ++G  C P+ VTY T+I GLC  G ++ A +   +M ++      N  
Sbjct: 181 TKLFMRMQ----KLG--CTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCR 234

Query: 226 PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRL 285
           PN ++Y+ +I G C   +W EA  LF EM+DQGVQPNVVTF+V++D LCK G++  A +L
Sbjct: 235 PNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKL 294

Query: 286 LELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK 345
           LE+MI  G+ P+  TY +LI G+CL G ++ A+ELFVSM S G   DV+SY++LINGYCK
Sbjct: 295 LEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCK 354

Query: 346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYI 405
           T  VEE + L+ +ML  G+ P V T   L   LF   +V+ A +LF  ++   +  +  I
Sbjct: 355 TLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCI 414

Query: 406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLP 465
              F+DGLCKNGYI +A++LF  L     +L+I ++ CLIDGLCK G+LE AWELF  L 
Sbjct: 415 CCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLY 474

Query: 466 RVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETS 525
             G+  D + Y+ MIHG C  GQ+DKA+ LF  ME  G  P+ + ++ LM GF  +N+  
Sbjct: 475 EEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLE 534

Query: 526 KVIELLHRMDMRNVMPDASTLSIVVDLLVKNE 557
           KV++LLHRM  ++V PD    +IV D++ K+E
Sbjct: 535 KVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDE 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/437 (46%), Positives = 271/437 (62%), Gaps = 34/437 (7%)

Query: 104 TGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 163
            GL PDL+  NIL NC       LC  +R+ E  A  T +   G  PD+ TYNTLI GLC
Sbjct: 4   AGLSPDLFTLNILANC-------LCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLC 56

Query: 164 RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDEN 223
           R  H I                       +V    IIDGLCK G  D+AKE+F +MK + 
Sbjct: 57  RV-HRI-----------------------SVATCIIIDGLCKVGHEDEAKEIFEEMKAQG 92

Query: 224 INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGAS 283
           + PN ++Y+SL+ GFC A    E+K LF EM+DQGVQPN+V F V++D LCK GK+  A 
Sbjct: 93  MIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAK 152

Query: 284 RLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGY 343
           +LLE+ I RG+  D  TYN+LIDG+C  G +  AR+LF+SM S GC H+ +SY+ILINGY
Sbjct: 153 KLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGY 212

Query: 344 CKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANT 403
           CK   VEE +NLY +M   G RP V TY TL  GL +  +V  A KLF  M+ + ++ ++
Sbjct: 213 CKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDS 272

Query: 404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSS 463
            IY  F+DGLCKNG + +A+ELF  L+   ++L+  SY+ LIDGLCK G++EIAWE F  
Sbjct: 273 CIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQ 332

Query: 464 LPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA---KGLEPNFVIFNTLMLGFIR 520
           L + GL  +VVT NIMIHG C   Q+DKA+ LF  ME     G  P+ + +NTL+ GF  
Sbjct: 333 LSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCE 392

Query: 521 NNETSKVIELLHRMDMR 537
           +N+  +V+ LLH+M  R
Sbjct: 393 SNKLEEVVNLLHKMFKR 409

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
TAIR|locus:2026207	548	AT1G62680 [Arabidopsis thalian	0.768	0.799	0.391	1.8e-87
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.843	0.763	0.370	4.7e-87
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.821	0.734	0.378	4.3e-86
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.845	0.785	0.360	4.3e-86
TAIR|locus:2026172	485	NG1 "novel gene 1" [Arabidopsi	0.752	0.884	0.403	6.9e-86
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.843	0.764	0.368	4.9e-85
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.845	0.765	0.356	1.9e-83
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.821	0.756	0.365	1.9e-83
TAIR|locus:2015213	629	AT1G63150 [Arabidopsis thalian	0.838	0.759	0.366	3.9e-83
TAIR|locus:2203916	634	AT1G62590 [Arabidopsis thalian	0.843	0.758	0.358	3.9e-83

TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 177/452 (39%), Positives = 268/452 (59%)

Query:    56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNI 115
             NDA+ +F  M+  RP  P +  FN L   + K K YD V+SL K++   G+  DLY +NI
Sbjct:    67 NDAIDLFSDMVKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query:   116 LINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLF 175
             +INCF       C   ++  A ++  K+   G EPD  T  +L+NG CR      A++L 
Sbjct:   126 VINCF-------CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178

Query:   176 EEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLI 235
             ++M     EIG   KPD V Y  IID LCK   V+ A + F +++ + I PN VTYT+L+
Sbjct:   179 DKMV----EIGY--KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query:   236 CGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK 295
              G C ++ W++A  L  +M+ + + PNV+T++ ++D   KNGK+  A  L E M+   + 
Sbjct:   233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292

Query:   296 PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNL 355
             PD  TY++LI+G CL  +ID A ++F  M S GC+ DVVSY+ LING+CK K VE+G+ L
Sbjct:   293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352

Query:   356 YRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415
             +R+M  +G+    VTY+TL  G F+   V+ A + F +M    ++ + + Y   + GLC 
Sbjct:   353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412

Query:   416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT 475
             NG + KA+ +F  ++  + +L+IV+Y  +I G+CK G++E AW LF SL   GL  D+VT
Sbjct:   413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472

Query:   476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN 507
             Y  M+ GLC  G + +   L+  M+ +GL  N
Sbjct:   473 YTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 184/497 (37%), Positives = 282/497 (56%)

Query:    58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
             AL V   M+ +    P + + + L      +K     ++L  ++  TG  P+   +N LI
Sbjct:   135 ALAVLGKMMKLG-YEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193

Query:   118 N-CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE 176
             +  FL N +S        EA AL  ++   GC+PD+ TY  ++NGLC+ G T +A NL  
Sbjct:   194 HGLFLHNKAS--------EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245

Query:   177 EMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC 236
             +M  G  E GV+       Y TIIDGLCK   +D A  LF +M+ + I PN VTY+SLI 
Sbjct:   246 KMEQGKLEPGVLI------YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query:   237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP 296
               C    W++A  L  +M+++ + P+V TF+ ++D   K GK+  A +L + M+ R + P
Sbjct:   300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query:   297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLY 356
                TY++LI+G+C+  ++D A+++F  M S  C  DVV+Y+ LI G+CK K VEEG+ ++
Sbjct:   360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query:   357 RKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN 416
             R+M  +G+    VTY+ L  GLF+    + A ++F EM  + V  N   Y T +DGLCKN
Sbjct:   420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query:   417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY 476
             G + KA+ +F  L+  K E  I +YN +I+G+CK G++E  W+LF +L   G+  DVV Y
Sbjct:   480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539

Query:   477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536
             N MI G C  G  ++A  LF +M+  G  PN   +NTL+   +R+ +     EL+  M  
Sbjct:   540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599

Query:   537 RNVMPDASTLSIVVDLL 553
                  DAST+ +V ++L
Sbjct:   600 CGFAGDASTIGLVTNML 616

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 182/481 (37%), Positives = 269/481 (55%)

Query:    73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR 132
             P   +F+ L   L         L L  R+   G  PDL   N L+N        LC+  +
Sbjct:   156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVN-------GLCLSGK 208

Query:   133 IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD 192
               EA  L  K+  +GC+P+  TY  ++N +C++G T +A+ L  +M   N       K D
Sbjct:   209 EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLD 262

Query:   193 TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFI 252
              V Y+ IIDGLCK G +D A  LF +M+ + I  N +TY  LI GFC A  W++   L  
Sbjct:   263 AVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLR 322

Query:   253 EMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTG 312
             +M+ + + PNVVTF+V++D   K GK+  A  L + MI RG+ PDT TY +LIDG+C   
Sbjct:   323 DMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKEN 382

Query:   313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH 372
              +D+A ++   M S GC  ++ +++ILINGYCK   +++GL L+RKM  +G+    VTY+
Sbjct:   383 HLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYN 442

Query:   373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL 432
             TL  G  E+ ++  A +LF EM    V  N   Y   +DGLC NG   KA+E+F  +   
Sbjct:   443 TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 502

Query:   433 KYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKA 492
             K EL+I  YN +I G+C   +++ AW+LF SLP  G+   V TYNIMI GLC  G + +A
Sbjct:   503 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562

Query:   493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDL 552
               LF  ME  G  P+   +N L+   + + + +K ++L+  +       DAST+ +V+D+
Sbjct:   563 ELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDM 622

Query:   553 L 553
             L
Sbjct:   623 L 623

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 179/496 (36%), Positives = 277/496 (55%)

Query:    58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
             AL +   M+ +    P + + N L             ++L  ++   G  PD   +  L+
Sbjct:   119 ALAILGKMMKLGYG-PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177

Query:   118 NCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEE 177
             +   Q+       ++  EA AL  ++ V GC+PD+ TY  +INGLC+ G   +ALNL  +
Sbjct:   178 HGLFQH-------NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230

Query:   178 MANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG 237
             M  G  E       D V Y+T+ID LCK   VD A  LF +M ++ I P+  TY+SLI  
Sbjct:   231 MEKGKIEA------DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284

Query:   238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD 297
              C    W++A  L  +M+++ + PNVVTF  ++D   K GK+  A +L + MI R + P+
Sbjct:   285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344

Query:   298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR 357
               TYN+LI+G+C+  ++D A+++F  M S  C+ DVV+Y+ LING+CK K V +G+ L+R
Sbjct:   345 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404

Query:   358 KMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG 417
              M  +G+    VTY TL  G F+    ++A  +F +M  + V  N   Y T +DGLCKNG
Sbjct:   405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query:   418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYN 477
              + KA+ +F  L+  K E +I +YN + +G+CK G++E  W+LF SL   G+  DV+ YN
Sbjct:   465 KLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYN 524

Query:   478 IMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537
              MI G C  G  ++A+ LF+ M+  G  P+   +NTL+   +R+ + +   EL+  M   
Sbjct:   525 TMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSC 584

Query:   538 NVMPDASTLSIVVDLL 553
                 DAST  +V D+L
Sbjct:   585 RFAGDASTYGLVTDML 600

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 180/446 (40%), Positives = 267/446 (59%)

Query:    61 VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF 120
             +F  M+  RP  P +  F+ +   +AK+K+YD V+SLF  +   G+  DLY+YNI+INC 
Sbjct:    56 LFCKMIQSRPL-PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINC- 113

Query:   121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 180
                   LC  SR + A ++  K+  FG EPDV T ++LING C+      A++L  +M  
Sbjct:   114 ------LCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME- 166

Query:   181 GNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY 240
                E+G   +PD V Y TIIDG CK G V+ A ELF +M+ + +  +AVTY SL+ G C 
Sbjct:   167 ---EMGF--RPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCC 221

Query:   241 ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTST 300
             +  W++A  L  +M+ + + PNV+TFT ++D   K GK   A +L E M  R V PD  T
Sbjct:   222 SGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFT 281

Query:   301 YNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKML 360
             YN+LI+G C+ G++D A+++   M + GC+ DVV+Y+ LING+CK+K V+EG  L+R+M 
Sbjct:   282 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 341

Query:   361 SKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV 420
              +G+    +TY+T+  G F+  + + A ++F  M       N   Y+  + GLC N  + 
Sbjct:   342 QRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVE 398

Query:   421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMI 480
             KA+ LF  ++  + EL+I +YN +I G+CK G +E AW+LF SL   GL  DVV+Y  MI
Sbjct:   399 KALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMI 458

Query:   481 HGLCNDGQMDKAHGLFLDMEAKGLEP 506
              G C   Q DK+  L+  M+  GL P
Sbjct:   459 SGFCRKRQWDKSDLLYRKMQEDGLLP 484

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009845 "seed germination" evidence=IMP

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 183/497 (36%), Positives = 284/497 (57%)

Query:    58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
             AL V   M+ +    P + + + L       K     ++L  ++      P+   +N LI
Sbjct:   134 ALAVLGKMMKLG-YEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLI 192

Query:   118 N-CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE 176
             +  FL N +S        EA AL  ++   GC+PD+FTY T++NGLC+ G   +AL+L +
Sbjct:   193 HGLFLHNKAS--------EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244

Query:   177 EMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC 236
             +M  G  E       D V YTTIID LC    V+ A  LF +M ++ I PN VTY SLI 
Sbjct:   245 KMEKGKIEA------DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298

Query:   237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP 296
               C    W++A  L  +M+++ + PNVVTF+ ++D   K GK+  A +L + MI R + P
Sbjct:   299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 358

Query:   297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLY 356
             D  TY++LI+G+C+  ++D A+ +F  M S  C  +VV+Y+ LI G+CK K VEEG+ L+
Sbjct:   359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query:   357 RKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN 416
             R+M  +G+    VTY+TL  GLF+    + A K+F +M  + V  +   Y+  +DGLCK 
Sbjct:   419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478

Query:   417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY 476
             G + KA+ +F  L+  K E +I +YN +I+G+CK G++E  W+LF SL   G+  +V+ Y
Sbjct:   479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538

Query:   477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536
               MI G C  G  ++A  LF +M+  G  PN   +NTL+   +R+ + +   EL+  M  
Sbjct:   539 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598

Query:   537 RNVMPDASTLSIVVDLL 553
                + DAST+S+V+++L
Sbjct:   599 CGFVGDASTISMVINML 615

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 177/496 (35%), Positives = 281/496 (56%)

Query:    58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
             AL V   M+ +    P + + N L             +SL  ++   G  PD + +N LI
Sbjct:   135 ALAVLAKMMKLG-YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193

Query:   118 NCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEE 177
             +   ++       +R  EA AL  ++ V GC+PD+ TY  ++NGLC+ G   +AL+L ++
Sbjct:   194 HGLFRH-------NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246

Query:   178 MANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG 237
             M  G  E GVV       Y TIID LC    V+ A  LF +M ++ I PN VTY SLI  
Sbjct:   247 MEQGKIEPGVVI------YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query:   238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD 297
              C    W++A  L  +M+++ + PNVVTF+ ++D   K GK+  A +L + MI R + PD
Sbjct:   301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query:   298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR 357
               TY++LI+G+C+  ++D A+ +F  M S  C  +VV+Y+ LI G+CK K V+EG+ L+R
Sbjct:   361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query:   358 KMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG 417
             +M  +G+    VTY TL  G F+  + ++A  +F +M  + V  +   Y+  +DGLC NG
Sbjct:   421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480

Query:   418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYN 477
              +  A+ +F  L+  K E +I +YN +I+G+CK G++E  W+LF SL   G+  +VVTY 
Sbjct:   481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540

Query:   478 IMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR 537
              M+ G C  G  ++A  LF +M+ +G  P+   +NTL+   +R+ + +   EL+  M   
Sbjct:   541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 600

Query:   538 NVMPDASTLSIVVDLL 553
               + DAST+ +V ++L
Sbjct:   601 RFVGDASTIGLVTNML 616

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 176/481 (36%), Positives = 268/481 (55%)

Query:    73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR 132
             P   +F+ L             ++L  R+      PDL   + LIN        LC++ R
Sbjct:   138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLIN-------GLCLKGR 190

Query:   133 IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD 192
             + EA  L  ++  +G +PD  TY  ++N LC++G++ +AL+LF +M   N       K  
Sbjct:   191 VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN------IKAS 244

Query:   193 TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFI 252
              V Y+ +ID LCK G  D A  LF +M+ + I  + VTY+SLI G C    W++   +  
Sbjct:   245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304

Query:   253 EMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTG 312
             EM+ + + P+VVTF+ ++D   K GK+  A  L   MI RG+ PDT TYN+LIDG+C   
Sbjct:   305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364

Query:   313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH 372
              +  A ++F  M S GC  D+V+YSILIN YCK K V++G+ L+R++ SKG+ P  +TY+
Sbjct:   365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424

Query:   373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL 432
             TL LG  +  ++  A +LF EM    V  +   Y   +DGLC NG + KA+E+F  ++  
Sbjct:   425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 484

Query:   433 KYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKA 492
             +  L I  YN +I G+C   +++ AW LF SL   G+  DVVTYN+MI GLC  G + +A
Sbjct:   485 RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544

Query:   493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDL 552
               LF  M+  G  P+   +N L+   +  +     +EL+  M +     D+ST+ +V+D+
Sbjct:   545 DMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDM 604

Query:   553 L 553
             L
Sbjct:   605 L 605

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 182/497 (36%), Positives = 281/497 (56%)

Query:    58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
             AL V   M+ +    P + + + L      +K     ++L  ++   G  PD + +  LI
Sbjct:   137 ALAVLAKMMKLG-YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195

Query:   118 N-CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE 176
             +  FL N +S        EA AL  ++   GC+PD+ TY T++NGLC+ G   +ALNL  
Sbjct:   196 HGLFLHNKAS--------EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLN 247

Query:   177 EMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC 236
             +M     E   + K + V + TIID LCK   V+ A +LF +M+ + I PN VTY SLI 
Sbjct:   248 KM-----EAARI-KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLIN 301

Query:   237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP 296
               C    W++A  L   M+++ + PNVVTF  ++D   K GK+  A +L E MI R + P
Sbjct:   302 CLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDP 361

Query:   297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLY 356
             DT TYN LI+G+C+  ++D A+++F  M S  C+ ++ +Y+ LING+CK K VE+G+ L+
Sbjct:   362 DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELF 421

Query:   357 RKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN 416
             R+M  +G+    VTY T+  G F+    + A  +F +M  N V  +   Y+  + GLC  
Sbjct:   422 REMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSY 481

Query:   417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY 476
             G +  A+ +F+ L+  + ELNI  YN +I+G+CK G++  AW+LF SL    +  DVVTY
Sbjct:   482 GKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTY 538

Query:   477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536
             N MI GLC+   + +A  LF  M+  G  PN   +NTL+   +R+ + +   EL+  M  
Sbjct:   539 NTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRS 598

Query:   537 RNVMPDASTLSIVVDLL 553
                + DAST+S+V ++L
Sbjct:   599 SGFVGDASTISLVTNML 615

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 178/497 (35%), Positives = 283/497 (56%)

Query:    58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI 117
             AL +   M+ +    P + + + L       K     ++L  ++   G  PD   +  LI
Sbjct:   139 ALALLGKMMKLG-YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 197

Query:   118 N-CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE 176
             +  FL N +S        EA AL  ++   GC+P++ TY  ++NGLC+ G T +ALNL  
Sbjct:   198 HGLFLHNKAS--------EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLN 249

Query:   177 EMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC 236
             +M     E   + + D V + TIID LCK   VD A  LF +M+ + I PN VTY+SLI 
Sbjct:   250 KM-----EAAKI-EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 303

Query:   237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP 296
               C    W++A  L  +M+++ + PN+VTF  ++D   K GK   A +L + MI R + P
Sbjct:   304 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 363

Query:   297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLY 356
             D  TYN+L++G+C+  ++D+A+++F  M S  C  DVV+Y+ LI G+CK+K VE+G  L+
Sbjct:   364 DIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423

Query:   357 RKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN 416
             R+M  +G+    VTY TL  GLF     ++A K+F +M  + V  +   Y+  +DGLC N
Sbjct:   424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483

Query:   417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY 476
             G + KA+E+F  ++  + +L+I  Y  +I+G+CK G+++  W+LF SL   G+  +VVTY
Sbjct:   484 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 543

Query:   477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM 536
             N MI GLC+   + +A+ L   M+  G  PN   +NTL+   +R+ + +   EL+  M  
Sbjct:   544 NTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603

Query:   537 RNVMPDASTLSIVVDLL 553
                + DAST+ +V ++L
Sbjct:   604 CRFVGDASTIGLVANML 620

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C7Q7	PPR38_ARATH	No assigned EC number	0.3570	0.8947	0.8471	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	570
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-37
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-32
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-32
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-23
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-20
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-18
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-18
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-18
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-11
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-11
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-09
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-07
pfam01535	31	pfam01535, PPR, PPR repeat	3e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	6e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
pfam01535	31	pfam01535, PPR, PPR repeat	2e-06
pfam01535	31	pfam01535, PPR, PPR repeat	2e-06
pfam01535	31	pfam01535, PPR, PPR repeat	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	9e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  148 bits (376), Expect = 1e-37
 Identities = 100/381 (26%), Positives = 175/381 (45%), Gaps = 18/381 (4%)

Query: 73  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR 132
           P +++FN+L    A ++  D  L + + +   GL  D   Y  LI        S C +S 
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI--------STCAKSG 486

Query: 133 IMEAA-ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKP 191
            ++A   +F ++   G E +V T+  LI+G  R G    A   +  M + N       KP
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKP 540

Query: 192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDEN--INPNAVTYTSLICGFCYANDWNEAKH 249
           D V +  +I    + G VD+A ++  +MK E   I+P+ +T  +L+     A   + AK 
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600

Query: 250 LFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC 309
           ++  + +  ++     +T+ ++   + G  D A  + + M  +GVKPD   ++ L+D   
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660

Query: 310 LTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV 369
             G +D+A E+       G     VSYS L+      K+ ++ L LY  + S  +RPTV 
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720

Query: 370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL 429
           T + L   L E +Q+  AL++  EM+R  +  NT  Y+  +    +       ++L    
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780

Query: 430 RILKYELNIVSYNCLIDGLCK 450
           +    + N+V   C+  GLC 
Sbjct: 781 KEDGIKPNLVMCRCIT-GLCL 800

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  133 bits (335), Expect = 1e-32
 Identities = 130/535 (24%), Positives = 227/535 (42%), Gaps = 76/535 (14%)

Query: 57  DALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNIL 116
            A  VF  M    P R  + S+N+L G  AK  ++D  L L+ R+   G+ PD+Y +   
Sbjct: 139 HAWYVFGKM----PERD-LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP-- 191

Query: 117 INCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE 176
             C L+    +   +R  E  A   +   FG E DV   N LI    + G  + A  +F+
Sbjct: 192 --CVLRTCGGIPDLARGREVHAHVVR---FGFELDVDVVNALITMYVKCGDVVSARLVFD 246

Query: 177 EMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLI- 235
            M           + D +++  +I G  + G   +  ELF  M++ +++P+ +T TS+I 
Sbjct: 247 RMP----------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296

Query: 236 -CG-------------------------FC--------YANDWNEAKHLFIEMMDQGVQP 261
            C                           C            W EA+ +F  M  +    
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK---- 352

Query: 262 NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELF 321
           + V++T ++    KNG  D A     LM    V PD  T  +++      G +D   +L 
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412

Query: 322 VSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEV 381
              E  G +  VV  + LI  Y K K +++ L ++  +  K     V+++ ++  GL   
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLN 468

Query: 382 HQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSY 441
           ++   AL  F +M    +  N+      +    + G ++   E+     +L+  +    +
Sbjct: 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA--HVLRTGIGFDGF 525

Query: 442 --NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM 499
             N L+D   + GR+  AW  F+S  +     DVV++NI++ G    G+   A  LF  M
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRM 580

Query: 500 EAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR-NVMPDASTLSIVVDLL 553
              G+ P+ V F +L+    R+   ++ +E  H M+ + ++ P+    + VVDLL
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  132 bits (334), Expect = 2e-32
 Identities = 96/393 (24%), Positives = 173/393 (44%), Gaps = 19/393 (4%)

Query: 128 CVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA----LNLFEEMANGNG 183
           C + R ++ A  F KL      P + T+N L++ +C +   I      L L +E      
Sbjct: 416 CKKQRAVKEAFRFAKLIR---NPTLSTFNMLMS-VCASSQDIDGALRVLRLVQEAG---- 467

Query: 184 EIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAND 243
                 K D   YTT+I    K G VD   E+F +M +  +  N  T+ +LI G   A  
Sbjct: 468 -----LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522

Query: 244 WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRG--VKPDTSTY 301
             +A   +  M  + V+P+ V F  ++    ++G +D A  +L  M      + PD  T 
Sbjct: 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582

Query: 302 NTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS 361
             L+      G++DRA+E++  +           Y+I +N   +  D +  L++Y  M  
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642

Query: 362 KGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVK 421
           KG++P  V +  L         ++ A ++  + R+  +   T  Y++ +          K
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702

Query: 422 AVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH 481
           A+EL+  ++ +K    + + N LI  LC+  +L  A E+ S + R+GL  + +TY+I++ 
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762

Query: 482 GLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTL 514
                   D    L    +  G++PN V+   +
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  102 bits (256), Expect = 8e-23
 Identities = 99/401 (24%), Positives = 154/401 (38%), Gaps = 71/401 (17%)

Query: 124 GSSLC-------VESRIMEAAALFTKLRV-FGCEPDVFTYNTLINGLCRTGHTIVALNLF 175
           G SLC          R  EA  LF  L           TY+ L+              ++
Sbjct: 87  GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVY 146

Query: 176 EEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLI 235
             + +   E      PD      ++    K G +  A+ LF +M + N+     ++ ++I
Sbjct: 147 WHVESSGFE------PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTII 196

Query: 236 CGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK 295
            G   A ++ EA  LF EM + G      TF V++      G      +L   ++  GV 
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256

Query: 296 PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNL 355
            DT     LID Y   G I+ AR +F  M         V+++ ++ GY      EE L L
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCL 312

Query: 356 YRKMLSKGIRPTVVTYHTLF-----LGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI 410
           Y +M   G+     T+  +      L L E  +  HA                       
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA----------------------- 349

Query: 411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLM 470
            GL + G+                 L+IV+   L+D   K GR+E A  +F  +PR    
Sbjct: 350 -GLIRTGF----------------PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388

Query: 471 ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIF 511
            +++++N +I G  N G+  KA  +F  M A+G+ PN V F
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 94.6 bits (235), Expect = 3e-20
 Identities = 103/470 (21%), Positives = 194/470 (41%), Gaps = 71/470 (15%)

Query: 74  PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI 133
           P ++++ L       K    V +++  + S+G  PD Y  N ++   ++ G        +
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG-------ML 174

Query: 134 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM--------------- 178
           ++A  LF ++     E ++ ++ T+I GL   G+   A  LF EM               
Sbjct: 175 IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230

Query: 179 ---ANGNGEIGV-----VCK------PDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENI 224
              + G G          C        DT     +ID   K G ++ A+ +F  M ++  
Sbjct: 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT 290

Query: 225 NPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR 284
               V + S++ G+       EA  L+ EM D GV  +  TF++++    +   ++ A +
Sbjct: 291 ----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 285 LLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYC 344
               +I  G   D      L+D Y   G+++ AR +F  M       +++S++ LI GY 
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402

Query: 345 KTKDVEEGLNLYRKMLSKGIRPTVVTYHTL-----FLGLFEVHQVEHALKLFDEMRRNH- 398
                 + + ++ +M+++G+ P  VT+  +     + GL      E   ++F  M  NH 
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL-----SEQGWEIFQSMSENHR 457

Query: 399 VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEI-- 456
           +      Y   I+ L + G + +A  + R     K  +N+  +  L+     H  LE+  
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTVNM--WAALLTACRIHKNLELGR 514

Query: 457 --AWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL 504
             A +L+   P   L   VV  N+      + G+  +A  +   ++ KGL
Sbjct: 515 LAAEKLYGMGPE-KLNNYVVLLNLYN----SSGRQAEAAKVVETLKRKGL 559

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 78/343 (22%), Positives = 142/343 (41%), Gaps = 28/343 (8%)

Query: 90  HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE 149
            +     +F R+       D  ++  +I+ + +NG    +  + +E  AL   +      
Sbjct: 338 SWGEAEKVFSRME----TKDAVSWTAMISGYEKNG----LPDKALETYAL---MEQDNVS 386

Query: 150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV 209
           PD  T  ++++     G   V + L  E+A   G I  V     V    +I+   K   +
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKL-HELAERKGLISYV-----VVANALIEMYSKCKCI 440

Query: 210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI 269
           DKA E+F  + ++++    +++TS+I G    N   EA   F +M+   ++PN VT    
Sbjct: 441 DKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAA 495

Query: 270 MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGC 329
           +    + G +     +   ++  G+  D    N L+D Y   G+++ A   F     N  
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-----NSH 550

Query: 330 MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALK 389
             DVVS++IL+ GY         + L+ +M+  G+ P  VT+ +L         V   L+
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610

Query: 390 LFDEMRRN-HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRI 431
            F  M     +  N   Y   +D L + G + +A      + I
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 79.0 bits (196), Expect = 1e-18
 Identities = 28/49 (57%), Positives = 34/49 (69%)

Query: 191 PDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFC 239
           PD VTY T+IDG CKKG V++A +LF +MK   I PN  TY+ LI G C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 81/349 (23%), Positives = 134/349 (38%), Gaps = 84/349 (24%)

Query: 273 LCKNGKMDGASRLLELMILRGVKPDTSTY------------------------------- 301
           LC +G+++ A +LLE M    V  D   Y                               
Sbjct: 61  LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120

Query: 302 ----NTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR 357
               N ++  +   G++  A  +F  M       D+ S+++L+ GY K    +E L LY 
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYH 176

Query: 358 KMLSKGIRPTVVTY---------------------HTLFLGLFEVHQVEHAL-------- 388
           +ML  G+RP V T+                     H +  G      V +AL        
Sbjct: 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236

Query: 389 ------KLFDEM-RRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSY 441
                  +FD M RR+ ++ N  I   F +G C  G     +ELF T+R L  + ++++ 
Sbjct: 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-----LELFFTMRELSVDPDLMTI 291

Query: 442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA 501
             +I      G   +  E+   + + G   DV   N +I    + G   +A  +F  ME 
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351

Query: 502 KGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVV 550
           K      V +  ++ G+ +N    K +E    M+  NV PD  T++ V+
Sbjct: 352 KDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 75.1 bits (186), Expect = 3e-17
 Identities = 28/50 (56%), Positives = 35/50 (70%)

Query: 296 PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK 345
           PD  TYNTLIDGYC  GK++ A +LF  M+  G   +V +YSILI+G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN 485
           ++V+YN LIDG CK G++E A +LF+ + + G+  +V TY+I+I GLC 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 72.8 bits (180), Expect = 2e-16
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 261 PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC 309
           P+VVT+  ++D  CK GK++ A +L   M  RG+KP+  TY+ LIDG C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK 205
           PDV TYNTLI+G C+ G    AL LF EM           KP+  TY+ +IDGLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 68.6 bits (169), Expect = 6e-15
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 226 PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK 275
           P+ VTY +LI G+C      EA  LF EM  +G++PNV T+++++D LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 19/47 (40%), Positives = 32/47 (68%)

Query: 472 DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF 518
           DVVTYN +I G C  G++++A  LF +M+ +G++PN   ++ L+ G 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.6 bits (156), Expect = 4e-13
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGL 378
           DVV+Y+ LI+GYCK   VEE L L+ +M  +GI+P V TY  L  GL
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 366 PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK 415
           P VVTY+TL  G  +  +VE ALKLF+EM++  +  N Y Y+  IDGLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.3 bits (145), Expect = 1e-11
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 108 PDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR 164
           PD+  YN LI+ + + G       ++ EA  LF +++  G +P+V+TY+ LI+GLC+
Sbjct: 1   PDVVTYNTLIDGYCKKG-------KVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 56.6 bits (138), Expect = 7e-11
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 189 CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMK 220
            KPD VTY T+IDGLC+ G VD+A EL  +M+
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 56.2 bits (137), Expect = 1e-10
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 146 FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM 178
            G +PDV TYNTLI+GLCR G    A+ L +EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 55.8 bits (136), Expect = 1e-10
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 292 RGVKPDTSTYNTLIDGYCLTGKIDRARELFVSME 325
           +G+KPD  TYNTLIDG C  G++D A EL   ME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK 450
           +   Y T IDG CK G + +A++LF  ++    + N+ +Y+ LIDGLCK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 51.6 bits (125), Expect = 5e-09
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME 500
           GL  DVVTYN +I GLC  G++D+A  L  +ME
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 48.2 bits (116), Expect = 6e-08
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN 507
           VTYN +I GLC  G++++A  LF +M+ +G+EP+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 47.7 bits (115), Expect = 9e-08
 Identities = 14/33 (42%), Positives = 25/33 (75%)

Query: 257 QGVQPNVVTFTVIMDELCKNGKMDGASRLLELM 289
           +G++P+VVT+  ++D LC+ G++D A  LL+ M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV 368
           V+Y+ LI+G CK   VEE L L+++M  +GI P V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 194 VTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA 228
           VTY T+IDGLCK G V++A ELF +MK+  I P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 194 VTYTTIIDGLCKKGFVDKAKELFLKMKDENI 224
           VTY ++I G CK G +++A ELF +MK++ +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.4 bits (109), Expect = 6e-07
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 327 NGCMHDVVSYSILINGYCKTKDVEEGLNLYRKM 359
            G   DVV+Y+ LI+G C+   V+E + L  +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 44.6 bits (107), Expect = 1e-06
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 434 YELNIVSYNCLIDGLCKHGRLEIAWELF 461
            + ++V+YN LIDGLC+ GR++ A EL 
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELL 30

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNV 263
           VTY +LI G C A    EA  LF EM ++G++P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 299 STYNTLIDGYCLTGKIDRARELFVSMESNGC 329
            TYN+LI GYC  GK++ A ELF  M+  G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGI 364
           V+Y+ LI+GYCK   +EE L L+++M  KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL 504
           VTYN +I G C  G++++A  LF +M+ KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 506 PNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVK 555
           P+ V +NTL+ G+ +  +  + ++L + M  R + P+  T SI++D L K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 300 TYNTLIDGYCLTGKIDRARELFVSMESNGC 329
           TYNTLIDG C  G+++ A ELF  M+  G 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGI 31

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.8 bits (102), Expect = 8e-06
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 73  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF 120
           P V ++N L     K    +  L LF  +   G+ P++Y Y+ILI+  
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 223 NINPNAVTYTSLICGFCYANDWNEAKHLFIEM 254
            + P+ VTY +LI G C A   +EA  L  EM
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.8 bits (97), Expect = 3e-05
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 399 VAANTYIYTTFIDGLCKNGYIVKAVELFR 427
           +  +   Y T IDGLC+ G + +AVEL  
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 264 VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDT 298
           VT+  ++D LCK G+++ A  L + M  RG++PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGV 259
           VTY SLI G+C A    EA  LF EM ++GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGL 469
           V+YN LI G CK G+LE A ELF  +   G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 153 FTYNTLINGLCRTGHTIVALNLFEEM 178
            TYN+LI+G C+ G    AL LF+EM
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP 506
           + TYN ++  L   G  D A  +  +M+A GL+P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 228 AVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP 261
             TY +L+     A D + A  +  EM   G++P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 16/149 (10%)

Query: 62  FDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC 119
           F+ + + R    +    S++ L G  +  K++   L L++ + S  L P +   N LI  
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI-- 726

Query: 120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMA 179
                ++LC  +++ +A  + ++++  G  P+  TY+ L+    R     V L+L  + A
Sbjct: 727 -----TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ-A 780

Query: 180 NGNGEIGVVCKPDTVTYTTIIDGLCKKGF 208
             +G      KP+ V    I  GLC + F
Sbjct: 781 KEDG-----IKPNLVMCRCIT-GLCLRRF 803

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV 473
           V+YN LIDGLCK GR+E A ELF  +   G+  DV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 333 VVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP 366
           + +Y+ L+    K  D +  L +  +M + G++P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 50/281 (17%)

Query: 281 GASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILI 340
           G  R   L +       T   N+ +   C  G++++A +L  SM+      D  +Y  L 
Sbjct: 34  GRKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF 93

Query: 341 NGYCKTKD-VEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV 399
              C+ K  VEEG  +  + LS      V   + +        ++ HA  +F +M     
Sbjct: 94  R-LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-- 150

Query: 400 AANTYIYTTFIDGLCKNGYIVKAVELF-------------------RT------------ 428
             + + +   + G  K GY  +A+ L+                   RT            
Sbjct: 151 --DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208

Query: 429 --LRILKY--ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC 484
               ++++  EL++   N LI    K G +  A  +F  +PR     D +++N MI G  
Sbjct: 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYF 264

Query: 485 NDGQMDKAHGLFLDMEAKGLEPNF-----VIFNTLMLGFIR 520
            +G+  +   LF  M    ++P+      VI    +LG  R
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query: 153 FTYNTLINGLCRTGHTIVALNLFEEM 178
            TYNTLI+GLC+ G    AL LF+EM
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEM 26

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 264 VTFTVIMDELCKNGKMDGASRLLELMILRGV 294
           VT+  ++   CK GK++ A  L + M  +GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 263 VVTFTVIMDELCKNGKMDGASRLLELMILRGVKP 296
           + T+  ++  L K G  D A  +LE M   G+KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 193 TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINP 226
             TY  ++  L K G  D A  +  +MK   + P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 300 TYNTLIDGYCLTGKIDRARELFVSMESNGCM 330
           TYN L+      G  D A  +   M+++G  
Sbjct: 3   TYNALLLALAKAGDPDLALAVLEEMKASGLK 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	570
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.98
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.94
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG2003	840	consensus TPR repeat-containing protein [General f	99.89
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.88
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.86
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.85
KOG2076	895	consensus RNA polymerase III transcription factor	99.84
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
KOG2003	840	consensus TPR repeat-containing protein [General f	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.77
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.77
KOG2076	895	consensus RNA polymerase III transcription factor	99.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.73
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.7
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.69
KOG1126	638	consensus DNA-binding cell division cycle control	99.67
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.67
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.66
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.65
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.64
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.63
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.63
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.62
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.6
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.56
PRK12370	553	invasion protein regulator; Provisional	99.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.55
KOG1129	478	consensus TPR repeat-containing protein [General f	99.54
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.53
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.5
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.49
PRK12370	553	invasion protein regulator; Provisional	99.48
KOG1129	478	consensus TPR repeat-containing protein [General f	99.48
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.47
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.47
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.42
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.34
PRK11189	296	lipoprotein NlpI; Provisional	99.34
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.33
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.33
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.32
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.29
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.29
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.28
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.24
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.19
PF13041	50	PPR_2: PPR repeat family	99.16
PF13041	50	PPR_2: PPR repeat family	99.16
KOG1125	579	consensus TPR repeat-containing protein [General f	99.14
PRK04841	903	transcriptional regulator MalT; Provisional	99.13
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.11
PRK04841	903	transcriptional regulator MalT; Provisional	99.1
KOG1125	579	consensus TPR repeat-containing protein [General f	99.1
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.08
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.06
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.05
PLN02789	320	farnesyltranstransferase	99.01
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.0
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.98
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.96
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.96
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.94
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.93
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
PLN02789	320	farnesyltranstransferase	98.88
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.88
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.88
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.86
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.81
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.79
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.79
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.76
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.68
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.66
PRK15359	144	type III secretion system chaperone protein SscB;	98.65
PRK15359	144	type III secretion system chaperone protein SscB;	98.63
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.63
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.62
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.51
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.51
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.49
PF12854	34	PPR_1: PPR repeat	98.48
PF12854	34	PPR_1: PPR repeat	98.48
KOG0553	304	consensus TPR repeat-containing protein [General f	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.25
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.25
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.22
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.2
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.16
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.13
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.09
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.08
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.07
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.06
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.05
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.0
KOG0553	304	consensus TPR repeat-containing protein [General f	97.98
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.98
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.98
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.97
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.96
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.96
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.95
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.95
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.94
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.94
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.93
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.92
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.92
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.91
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.9
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.89
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.87
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.86
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.85
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.8
PF12688	120	TPR_5: Tetratrico peptide repeat	97.79
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.79
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.78
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.77
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.77
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.73
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.73
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.71
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.65
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.65
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.63
PF12688	120	TPR_5: Tetratrico peptide repeat	97.62
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.61
KOG1258	577	consensus mRNA processing protein [RNA processing	97.57
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.55
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.54
PF13371	73	TPR_9: Tetratricopeptide repeat	97.52
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.52
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.52
PRK10803	263	tol-pal system protein YbgF; Provisional	97.5
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.48
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.47
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.45
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.44
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.43
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.42
KOG4555	175	consensus TPR repeat-containing protein [Function	97.41
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.4
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.38
PRK10803	263	tol-pal system protein YbgF; Provisional	97.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.36
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.31
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.3
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.29
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.27
KOG1585	308	consensus Protein required for fusion of vesicles	97.26
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.21
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.2
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.19
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.18
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.18
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.13
PRK15331	165	chaperone protein SicA; Provisional	97.11
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.06
KOG1258	577	consensus mRNA processing protein [RNA processing	97.05
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.05
PRK15331	165	chaperone protein SicA; Provisional	97.05
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.04
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.04
PF13371	73	TPR_9: Tetratricopeptide repeat	97.01
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.96
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.95
PF13431	34	TPR_17: Tetratricopeptide repeat	96.95
PF13512	142	TPR_18: Tetratricopeptide repeat	96.94
PRK11906	458	transcriptional regulator; Provisional	96.9
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.88
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.84
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.82
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.75
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.7
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.67
PRK11906	458	transcriptional regulator; Provisional	96.65
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.57
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.47
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.45
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.34
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.95
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.93
KOG4555	175	consensus TPR repeat-containing protein [Function	95.93
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.91
KOG1585	308	consensus Protein required for fusion of vesicles	95.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.87
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.79
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.78
KOG3941	406	consensus Intermediate in Toll signal transduction	95.74
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.73
PF13428	44	TPR_14: Tetratricopeptide repeat	95.7
PF13512	142	TPR_18: Tetratricopeptide repeat	95.66
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.64
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.61
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.51
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.41
PF13428	44	TPR_14: Tetratricopeptide repeat	95.41
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.41
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.37
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.26
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.21
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.16
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.09
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.05
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.89
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.47
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.43
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.43
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.2
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.73
KOG4234	271	consensus TPR repeat-containing protein [General f	93.68
KOG1586	288	consensus Protein required for fusion of vesicles	93.67
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.49
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.42
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	93.38
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.31
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.26
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.19
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.08
KOG4234	271	consensus TPR repeat-containing protein [General f	92.91
PF13431	34	TPR_17: Tetratricopeptide repeat	92.9
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.82
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.81
KOG3941	406	consensus Intermediate in Toll signal transduction	92.62
PRK09687	280	putative lyase; Provisional	92.56
PRK11619	644	lytic murein transglycosylase; Provisional	92.55
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.55
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.51
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.3
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.2
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.13
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.11
KOG2471	696	consensus TPR repeat-containing protein [General f	92.1
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.03
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.6
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.16
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.1
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.01
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.97
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.45
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.24
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.05
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.79
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.42
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.24
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	89.21
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.97
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.52
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.43
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.39
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	88.27
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.17
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.73
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.69
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.35
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.33
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.31
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	86.89
KOG2471	696	consensus TPR repeat-containing protein [General f	86.82
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.7
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.64
KOG4570	418	consensus Uncharacterized conserved protein [Funct	86.41
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.8
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.36
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.33
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.2
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	85.12
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.96
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	84.55
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.13
KOG4570	418	consensus Uncharacterized conserved protein [Funct	83.97
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.88
PRK09687	280	putative lyase; Provisional	83.28
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	82.38
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.08
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	82.07
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.05
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	81.16
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	81.01
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.0
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.91
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	80.56
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	80.54
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	80.15

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.3e-66  Score=525.94  Aligned_cols=501  Identities=18%  Similarity=0.291  Sum_probs=463.2

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      ++.|++++|+++|+.|.+.+..+++...+..++..+.+.|.+++|+.+|+.|..    |+..+|+.++.+|++.|     
T Consensus       381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g-----  451 (1060)
T PLN03218        381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ-----  451 (1060)
T ss_pred             HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc-----
Confidence            357899999999999998876456777788888999999999999999998874    89999999999998875     


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                        ++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+      +.||..+|+.+|.+|++.|++
T Consensus       452 --~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        452 --DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCH
Confidence              999999999999999999999999999999999999999999999999988      789999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914          210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMD--QGVQPNVVTFTVIMDELCKNGKMDGASRLLE  287 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  287 (570)
                      ++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus       524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~  603 (1060)
T PLN03218        524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ  603 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999976  5789999999999999999999999999999


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT  367 (570)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  367 (570)
                      .|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd  683 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG  683 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914          368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG  447 (570)
Q Consensus       368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  447 (570)
                      ..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...++.||..+|+.++.+
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a  763 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA  763 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----c-------------------CChhHHHHHHHHHHHCCC
Q 038914          448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----D-------------------GQMDKAHGLFLDMEAKGL  504 (570)
Q Consensus       448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~  504 (570)
                      |.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+    +                   +..++|..+|++|.+.|+
T Consensus       764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi  843 (1060)
T PLN03218        764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT  843 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999866432    1                   234679999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914          505 EPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH  569 (570)
Q Consensus       505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  569 (570)
                      .||..||..++.+++..+..+.+..+++.|...+..|+..+|..+++++++.  ..+|...++.+
T Consensus       844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em  906 (1060)
T PLN03218        844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA  906 (1060)
T ss_pred             CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence            9999999999988888899999999999998888889999999999998432  24677776653

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.4e-65  Score=522.18  Aligned_cols=481  Identities=21%  Similarity=0.326  Sum_probs=453.3

Q ss_pred             CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914           72 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP  150 (570)
Q Consensus        72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  150 (570)
                      .++...|..+...+.+.|++++|+++|++|.+.++. ++..++..++..|.+.       |.+++|..+++.|..    |
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-------g~~~eAl~lf~~M~~----p  435 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-------RAVKEAFRFAKLIRN----P  435 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-------CCHHHHHHHHHHcCC----C
Confidence            467778888888999999999999999999999864 5666777788888775       499999999998863    8


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      +..+|+.++.+|++.|+++.|.++|+.|.+.+      +.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus       436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT  509 (1060)
T PLN03218        436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT  509 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999988      899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHH
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMIL--RGVKPDTSTYNTLIDGY  308 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~  308 (570)
                      |+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|..  .++.||..+|+.++.+|
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay  589 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999986  57899999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHH
Q 038914          309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHAL  388 (570)
Q Consensus       309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  388 (570)
                      ++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|.
T Consensus       590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~  669 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF  669 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914          389 KLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG  468 (570)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  468 (570)
                      ++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G  749 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG  749 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHH
Q 038914          469 LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR----N-------------------NETS  525 (570)
Q Consensus       469 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~  525 (570)
                      +.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+    .                   +..+
T Consensus       750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~  829 (1060)
T PLN03218        750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS  829 (1060)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence            9999999999999999999999999999999999999999999999865432    1                   2347


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914          526 KVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH  569 (570)
Q Consensus       526 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  569 (570)
                      +|..+|++|.+.|+.||..||..++.++++.+....+...++.+
T Consensus       830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m  873 (1060)
T PLN03218        830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL  873 (1060)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence            89999999999999999999999999998888777666655543

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3e-64  Score=523.62  Aligned_cols=491  Identities=23%  Similarity=0.353  Sum_probs=416.3

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-----
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG-----  124 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  124 (570)
                      .+.|+++.|..+|+.+.     .++..+|+.++.+|.+.|++++|+++|++|...|+.||..+|..++.+|...+     
T Consensus       132 ~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~  206 (857)
T PLN03077        132 VRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG  206 (857)
T ss_pred             HhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence            47889999999999884     36889999999999999999999999999999999999999999999887553     


Q ss_pred             -----------------------CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914          125 -----------------------SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG  181 (570)
Q Consensus       125 -----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  181 (570)
                                             ..|.+.|++++|..+|++|.    .+|..+|+.+|.+|++.|++++|+++|++|...
T Consensus       207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~  282 (857)
T PLN03077        207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMREL  282 (857)
T ss_pred             HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                                   34566677777777777765    356777777777777777777777777777776


Q ss_pred             CCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038914          182 NGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP  261 (570)
Q Consensus       182 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  261 (570)
                      +      +.||..+|+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .|
T Consensus       283 g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~  352 (857)
T PLN03077        283 S------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TK  352 (857)
T ss_pred             C------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CC
Confidence            6      6777777777777777777777777777777777777788888888888888888888888887775    35


Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914          262 NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN  341 (570)
Q Consensus       262 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  341 (570)
                      |..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..++..+++.++.
T Consensus       353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~  432 (857)
T PLN03077        353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE  432 (857)
T ss_pred             CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            77778888888888888888888888888878888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038914          342 GYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVK  421 (570)
Q Consensus       342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  421 (570)
                      +|++.|++++|.++|++|.+    +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+.+.
T Consensus       433 ~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~  507 (857)
T PLN03077        433 MYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC  507 (857)
T ss_pred             HHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence            88888888888888887764    4677888888888888888888888888875 478888888888888888888888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          422 AVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +.+++..+.+.++.++..++++++.+|.+.|++++|.++|+.+     .+|..+|+.++.+|++.|+.++|.++|++|.+
T Consensus       508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE  582 (857)
T ss_pred             hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888888888888888889999999999999999999887     57999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914          502 KGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD-MRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH  569 (570)
Q Consensus       502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  569 (570)
                      .|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..++++|++.|+.++|.+.++++
T Consensus       583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            9999999999999999999999999999999999 7899999999999999999999999999988875

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.6e-63  Score=515.57  Aligned_cols=501  Identities=20%  Similarity=0.284  Sum_probs=386.4

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG----  124 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  124 (570)
                      +.+.|++++|+.+|+.+.+.+. +++..+|..++..+.+.+.++.+.+++..+.+.+..++...++.++..|.+.|    
T Consensus        61 l~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~  139 (857)
T PLN03077         61 LCSHGQLEQALKLLESMQELRV-PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH  139 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHH
Confidence            3466788888888888776543 35555555555555555555555555555555444444444444444444433    


Q ss_pred             --------------------CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 038914          125 --------------------SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE  184 (570)
Q Consensus       125 --------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  184 (570)
                                          ..+.+.|++++|+.+|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.+  
T Consensus       140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g--  217 (857)
T PLN03077        140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG--  217 (857)
T ss_pred             HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC--
Confidence                                1122234777777777777776777777777777766666666666666666666665  


Q ss_pred             CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 038914          185 IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVV  264 (570)
Q Consensus       185 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  264 (570)
                          +.||..+++.|+.+|++.|++++|.++|++|..    ||..+|+.++.+|++.|++++|+++|.+|...|+.||..
T Consensus       218 ----~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~  289 (857)
T PLN03077        218 ----FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM  289 (857)
T ss_pred             ----CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence                667777788888888888888888888888864    577888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914          265 TFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYC  344 (570)
Q Consensus       265 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  344 (570)
                      +|+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|..    +|..+|+.++.+|.
T Consensus       290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~  365 (857)
T PLN03077        290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE  365 (857)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence            88888888888888888888888888888888888888899888888999889888888863    57788889999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038914          345 KTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVE  424 (570)
Q Consensus       345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  424 (570)
                      +.|++++|+++|++|...|+.||..+|..++.+|++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|++++|.+
T Consensus       366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  445 (857)
T PLN03077        366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE  445 (857)
T ss_pred             hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999998888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914          425 LFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL  504 (570)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  504 (570)
                      +|++|.    .+|..+|+.++.+|.+.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus       446 vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~  520 (857)
T PLN03077        446 VFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI  520 (857)
T ss_pred             HHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence            888775    45667777777777777777777777777764 3666666666655554444444444444444333332


Q ss_pred             ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          505 ------------------------------EPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLV  554 (570)
Q Consensus       505 ------------------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  554 (570)
                                                    .||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||..++.+|.
T Consensus       521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  600 (857)
T PLN03077        521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS  600 (857)
T ss_pred             CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence                                          57888999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccchhhhhc
Q 038914          555 KNEISLNSIPQFKRH  569 (570)
Q Consensus       555 ~~g~~~~a~~~~~~~  569 (570)
                      +.|+.++|.+.|+.+
T Consensus       601 ~~g~v~ea~~~f~~M  615 (857)
T PLN03077        601 RSGMVTQGLEYFHSM  615 (857)
T ss_pred             hcChHHHHHHHHHHH
Confidence            999999999998765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-59  Score=477.01  Aligned_cols=461  Identities=17%  Similarity=0.305  Sum_probs=425.0

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      .+.|++++|+.+|+++....+..++..+|+.++.++.+.++++.|.+++..|.+.|+.||..+++.++..|.+.|     
T Consensus        98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g-----  172 (697)
T PLN03081         98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG-----  172 (697)
T ss_pred             HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-----
Confidence            467899999999999987765568899999999999999999999999999999999999999999999888764     


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                        ++++|.++|++|.    .||..+|+.++.+|++.|++++|+++|++|.+.+      ..|+..+|..++.+|...|..
T Consensus       173 --~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        173 --MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             --CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHHhcCCcH
Confidence              9999999999986    4789999999999999999999999999999887      789999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      +.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..    +|..+|+.++.+|++.|++++|.++|++|
T Consensus       241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999854    58899999999999999999999999999


Q ss_pred             HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914          290 ILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV  369 (570)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  369 (570)
                      .+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|++++..+++.++.+|++.|++++|.++|++|.+    ||..
T Consensus       317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~  392 (697)
T PLN03081        317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI  392 (697)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999864    5889


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRI-LKYELNIVSYNCLIDGL  448 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~  448 (570)
                      +|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l  472 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL  472 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999975 58899999999999999


Q ss_pred             HhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038914          449 CKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKV  527 (570)
Q Consensus       449 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a  527 (570)
                      .+.|++++|.++++++.   +.|+..+|+.++.+|...|+++.|..+++++.+  +.| +..+|..++..|.+.|++++|
T Consensus       473 ~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        473 GREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHH
Confidence            99999999999998764   579999999999999999999999999999876  456 467899999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 038914          528 IELLHRMDMRNVM  540 (570)
Q Consensus       528 ~~~~~~~~~~~~~  540 (570)
                      .+++++|.+.|+.
T Consensus       548 ~~v~~~m~~~g~~  560 (697)
T PLN03081        548 AKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHHHHHcCCc
Confidence            9999999988864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.5e-60  Score=481.51  Aligned_cols=468  Identities=20%  Similarity=0.287  Sum_probs=445.4

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD  151 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (570)
                      .+..+|+.++..+.+.|++++|+++|+.|...+ ..|+..+|..++.+|.+.+       +++.+..++..|.+.|+.||
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~-------~~~~a~~l~~~m~~~g~~~~  157 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALK-------SIRCVKAVYWHVESSGFEPD  157 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHhCCCcc
Confidence            455689999999999999999999999998864 6799999999999999875       99999999999999999999


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      ..+|+.++.+|++.|++++|.++|++|.          .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|
T Consensus       158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~  227 (697)
T PLN03081        158 QYMMNRVLLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF  227 (697)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence            9999999999999999999999999995          478999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLT  311 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  311 (570)
                      +.++.+++..|..+.+.+++..+.+.|..||..+++.++.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.
T Consensus       228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~  303 (697)
T PLN03081        228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALH  303 (697)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999995    45889999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914          312 GKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLF  391 (570)
Q Consensus       312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  391 (570)
                      |+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|
T Consensus       304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf  383 (697)
T PLN03081        304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF  383 (697)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh-CCCC
Q 038914          392 DEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR-VGLM  470 (570)
Q Consensus       392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~  470 (570)
                      +.|.    .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .|+.
T Consensus       384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~  459 (697)
T PLN03081        384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK  459 (697)
T ss_pred             HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence            9986    4688999999999999999999999999999999999999999999999999999999999999986 6899


Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 038914          471 ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIV  549 (570)
Q Consensus       471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l  549 (570)
                      |+..+|+.++.+|++.|++++|.+++++|   ++.|+..+|+.++.+|...|+++.|..+++++.+  +.|+ ..+|..+
T Consensus       460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L  534 (697)
T PLN03081        460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVL  534 (697)
T ss_pred             CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHH
Confidence            99999999999999999999999998876   4789999999999999999999999999999984  4564 6799999


Q ss_pred             HHHHHccCcccccchhhhhcC
Q 038914          550 VDLLVKNEISLNSIPQFKRHK  570 (570)
Q Consensus       550 ~~~~~~~g~~~~a~~~~~~~~  570 (570)
                      +++|.+.|++++|.+.++.++
T Consensus       535 ~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        535 LNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             HHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999988754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.1e-33  Score=300.87  Aligned_cols=497  Identities=10%  Similarity=0.026  Sum_probs=338.8

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-----
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG-----  124 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  124 (570)
                      ...|++++|...|+++.+.+|  .+...+..++.++...|++++|++.|+++........ .....++..+...|     
T Consensus       374 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A  450 (899)
T TIGR02917       374 LALGDFEKAAEYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKA  450 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHH
Confidence            344566666666666665555  4555555566666666666666666665555422111 11111122222211     


Q ss_pred             ----------------------CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          125 ----------------------SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       125 ----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                                            ..+...|++++|...|+++.+.. +.+..++..++..+...|++++|...|+++...+
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  529 (899)
T TIGR02917       451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID  529 (899)
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                                  11222346666666666555542 2233445555555566666666666666665543


Q ss_pred             CCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038914          183 GEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN  262 (570)
Q Consensus       183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  262 (570)
                             +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.... +.+
T Consensus       530 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~  600 (899)
T TIGR02917       530 -------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS  600 (899)
T ss_pred             -------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence                   3345566666666666666666666666665543 2345556666666777777777777777666542 335


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914          263 VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING  342 (570)
Q Consensus       263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  342 (570)
                      ...|..++.++...|++++|...++.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..++..
T Consensus       601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  678 (899)
T TIGR02917       601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL  678 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            5667777777777777777777777776653 3345566667777777777777777777776653 3356667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038914          343 YCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKA  422 (570)
Q Consensus       343 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  422 (570)
                      +...|++++|..+++.+.... +.+...+..+...+...|++++|...++.+....  |+..++..++.++.+.|++++|
T Consensus       679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A  755 (899)
T TIGR02917       679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA  755 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence            777777777777777777653 3355666777777888888888888888887754  3446667778888888888888


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          423 VELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      ...++.+.+.. +.+...+..++..|...|++++|...|+++.+.. +.+..+++.++..+...|+ .+|+.+++++.+.
T Consensus       756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            88888887765 6678888888888999999999999999988764 4567788889999999999 8899999998875


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhhc
Q 038914          503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKRH  569 (570)
Q Consensus       503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  569 (570)
                       .+.+..++..+...+...|++++|.++++++++.+ +.+..++..++.++.+.|+.++|++.+++.
T Consensus       833 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  897 (899)
T TIGR02917       833 -APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKL  897 (899)
T ss_pred             -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             23356677888889999999999999999999876 348899999999999999999999999875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.6e-32  Score=294.03  Aligned_cols=496  Identities=12%  Similarity=0.064  Sum_probs=252.8

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      ...|++++|+..|+.+++..|  .+...+..++..+.+.|++++|+..++++.... +.+...+..+...+..       
T Consensus       306 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-------  375 (899)
T TIGR02917       306 YQLGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLA-------  375 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH-------
Confidence            345566666666666665555  444555555555666666666666666555442 1122233333333322       


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc----------------------
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGV----------------------  187 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------------  187 (570)
                      .|++++|...|+++.+.. +.+...+..+...+...|++++|+..++.+.+..+....                      
T Consensus       376 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  454 (899)
T TIGR02917       376 LGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA  454 (899)
T ss_pred             CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence            345566666655555442 113334444455555555555555555555443210000                      


Q ss_pred             -----ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038914          188 -----VCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN  262 (570)
Q Consensus       188 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  262 (570)
                           ..+.+..++..++.++...|++++|.+.|+++.+.. +.+...+..++..+...|++++|...++.+.... +.+
T Consensus       455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~  532 (899)
T TIGR02917       455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN  532 (899)
T ss_pred             HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence                 012333444444444555555555555555444432 1233344444444455555555555555544432 123


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914          263 VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING  342 (570)
Q Consensus       263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  342 (570)
                      ..++..+...+...|++++|..+++++...+ +.+...+..++..+...|++++|..+++.+.... +.+...|..++.+
T Consensus       533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  610 (899)
T TIGR02917       533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA  610 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4444444555555555555555555554432 2233444445555555555555555555554432 2344455555555


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038914          343 YCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKA  422 (570)
Q Consensus       343 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  422 (570)
                      +...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|
T Consensus       611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  688 (899)
T TIGR02917       611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA  688 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            555555555555555555432 1233445555555555555555555555555432 33344555555555555566666


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          423 VELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      ..+++.+.+.. +.+...+..++..+...|++++|...|+.+.+.  .|+..++..++.++...|++++|.+.++++.+.
T Consensus       689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  765 (899)
T TIGR02917       689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT  765 (899)
T ss_pred             HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            65555555443 344555555555566666666666666665553  244445555566666666666666666665554


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                       .+.+...+..+...|...|++++|..+++++.+.+ +++...+..++..+...|+ .+|+..+++
T Consensus       766 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~  828 (899)
T TIGR02917       766 -HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK  828 (899)
T ss_pred             -CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence             23345555556666666666666666666666443 3445556666666666666 555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.98  E-value=1.2e-26  Score=247.89  Aligned_cols=505  Identities=13%  Similarity=0.034  Sum_probs=357.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhH----------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSF----------------NILFGCLAKTKHYDTVLSLFKRLNSTGLFPD  109 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  109 (570)
                      +...+..|++++|.+.++++.+..|  .+...+                ..++..+.+.|++++|++.|+++..... |+
T Consensus        69 ~~~~l~~g~~~~A~~~l~~l~~~~P--~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~  145 (1157)
T PRK11447         69 FRLLLRQGDSDGAQKLLDRLSQLAP--DSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PE  145 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CC
Confidence            3444678899999999999999998  444432                4456678899999999999999997642 33


Q ss_pred             HhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----
Q 038914          110 LYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI----  185 (570)
Q Consensus       110 ~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----  185 (570)
                      .............      ..|+.++|+..|+++.+.. +.+...+..+...+...|++++|+..++++.......    
T Consensus       146 ~~la~~y~~~~~~------~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa  218 (1157)
T PRK11447        146 LDLAVEYWRLVAK------LPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA  218 (1157)
T ss_pred             hHHHHHHHHHHhh------CCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence            2211112222211      2479999999999999874 3356778889999999999999999999986532100    


Q ss_pred             --------Cccc--------------CCChhh---------------------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          186 --------GVVC--------------KPDTVT---------------------YTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       186 --------~~~~--------------~~~~~~---------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                              ....              .|+...                     .......+...|++++|+..|++....
T Consensus       219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~  298 (1157)
T PRK11447        219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA  298 (1157)
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                    0000              011000                     012245667889999999999999986


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhH------------HHHHHHHHhcCChhHHHHHHHHH
Q 038914          223 NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-VVTF------------TVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       223 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      . +.+...+..+..++.+.|++++|+..|++..+...... ...+            ......+.+.|++++|+..|+++
T Consensus       299 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        299 N-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3 33788899999999999999999999999988643211 1111            12345677899999999999999


Q ss_pred             HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------------------------
Q 038914          290 ILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSIL------------------------------  339 (570)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------  339 (570)
                      ++.. +.+...+..+..++...|++++|++.|+++.+... .+...+..+                              
T Consensus       378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~  455 (1157)
T PRK11447        378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI  455 (1157)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence            9874 34566777889999999999999999999887642 233333222                              


Q ss_pred             ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 038914          340 ------------INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYT  407 (570)
Q Consensus       340 ------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  407 (570)
                                  ...+...|++++|++.|++.++.... +...+..+...+...|++++|...++.+.+.. +.+...+.
T Consensus       456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~  533 (1157)
T PRK11447        456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVY  533 (1157)
T ss_pred             HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence                        23445678888888888888876322 45667778888888999999999998887653 22333333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCChhhHHHHHHHH
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRIL---------------------------------------KYELNIVSYNCLIDGL  448 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~  448 (570)
                      .+...+...++.++|...++.+...                                       ..+.+...+..+...+
T Consensus       534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~  613 (1157)
T PRK11447        534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA  613 (1157)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            3333333344444444333321100                                       1245566677788888


Q ss_pred             HhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038914          449 CKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKV  527 (570)
Q Consensus       449 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a  527 (570)
                      .+.|++++|+..|+++.+.. +.+...+..++.++...|++++|++.++.+.+.  .| +..++..+..++...|++++|
T Consensus       614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA  690 (1157)
T PRK11447        614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAA  690 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHH
Confidence            89999999999999988853 445678888999999999999999999988764  34 455667778888899999999


Q ss_pred             HHHHHHHHhCCC--CC---CHHHHHHHHHHHHccCcccccchhhhh
Q 038914          528 IELLHRMDMRNV--MP---DASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       528 ~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      .++++++....-  .|   +...+..+...+...|+.++|+..|++
T Consensus       691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~  736 (1157)
T PRK11447        691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD  736 (1157)
T ss_pred             HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999885421  12   234666678888899999999988875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.98  E-value=1.6e-26  Score=247.09  Aligned_cols=500  Identities=14%  Similarity=0.046  Sum_probs=363.5

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---------
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF---------  120 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---------  120 (570)
                      ...++.+.|.+.+++++..+|  .++.++..++..+.+.|+.++|.+.++++.+.  .|+...+..+...+         
T Consensus        39 ~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~  114 (1157)
T PRK11447         39 EATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQ  114 (1157)
T ss_pred             HhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhh
Confidence            346799999999999999999  78999999999999999999999999999998  45544432211111         


Q ss_pred             -HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          121 -LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       121 -~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                       ...+..+...|++++|+..|+++...+ +++.. ....+.......|+.++|+..|+++.+..       +.+...+..
T Consensus       115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-------P~~~~~~~~  186 (1157)
T PRK11447        115 ALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-------PGNTGLRNT  186 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence             111233556789999999999998764 23322 11122222334699999999999999975       556788899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC------------------C--------------CCHHHH---------------
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDENI------------------N--------------PNAVTY---------------  231 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~---------------  231 (570)
                      +...+...|+.++|++.++++.....                  .              |+....               
T Consensus       187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~  266 (1157)
T PRK11447        187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA  266 (1157)
T ss_pred             HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998754310                  0              010000               


Q ss_pred             ------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhH---
Q 038914          232 ------TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP-DTSTY---  301 (570)
Q Consensus       232 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~---  301 (570)
                            ......+...|++++|+..|++.++... .+..++..+..++.+.|++++|+..|++.++..... ....+   
T Consensus       267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l  345 (1157)
T PRK11447        267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL  345 (1157)
T ss_pred             CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence                  0123456778999999999999998643 367888999999999999999999999998764221 11111   


Q ss_pred             ---------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 038914          302 ---------NTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH  372 (570)
Q Consensus       302 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  372 (570)
                               ......+.+.|++++|+..|+++.... +.+...+..+..++...|++++|++.|+++.+.... +...+.
T Consensus       346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~  423 (1157)
T PRK11447        346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR  423 (1157)
T ss_pred             HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence                     223456778999999999999999875 446777888999999999999999999999875322 222222


Q ss_pred             HH------------------------------------------HHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 038914          373 TL------------------------------------------FLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI  410 (570)
Q Consensus       373 ~l------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  410 (570)
                      .+                                          ...+...|++++|+..+++..+.. +.+...+..+.
T Consensus       424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA  502 (1157)
T PRK11447        424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA  502 (1157)
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            22                                          233446788889999998888764 44567777888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-----------------------
Q 038914          411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV-----------------------  467 (570)
Q Consensus       411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------  467 (570)
                      ..|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...                       
T Consensus       503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~  581 (1157)
T PRK11447        503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN  581 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence            88999999999999999887654 334444433333334444444444444432110                       


Q ss_pred             ----------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914          468 ----------------GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL  531 (570)
Q Consensus       468 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  531 (570)
                                      ..+.+...+..+...+...|++++|+..|+++++.. +.+...+..++..+...|++++|++.+
T Consensus       582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l  660 (1157)
T PRK11447        582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL  660 (1157)
T ss_pred             HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                            023445566778888889999999999999998852 335778888999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          532 HRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       532 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      +++.+.. +.+......+..++.+.|++++|++.|++
T Consensus       661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~  696 (1157)
T PRK11447        661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR  696 (1157)
T ss_pred             HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9887542 23456677788888899999999988875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-25  Score=203.05  Aligned_cols=447  Identities=15%  Similarity=0.117  Sum_probs=345.5

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch
Q 038914           75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT  154 (570)
Q Consensus        75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  154 (570)
                      ......++.-..+.|++++|++.....-..  .|....-..++.+.      +.+..+++.....-....+.. +.-..+
T Consensus        48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~a~r~~-~q~ae~  118 (966)
T KOG4626|consen   48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLLAIRKN-PQGAEA  118 (966)
T ss_pred             chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhhhhhcc-chHHHH
Confidence            344667777788899999999887766554  33332222233322      222245655555444444432 334678


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHH
Q 038914          155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT-YTS  233 (570)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~  233 (570)
                      |..+...+...|++++|+..++.+.+..       +..+..|..+..++...|+.+.|.+.|.+.+..  .|+... ...
T Consensus       119 ysn~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~  189 (966)
T KOG4626|consen  119 YSNLANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD  189 (966)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence            8889999999999999999999998864       345889999999999999999999999988875  344333 334


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcC
Q 038914          234 LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD-TSTYNTLIDGYCLTG  312 (570)
Q Consensus       234 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  312 (570)
                      +...+...|++++|...|.+.++... --...|..|...+-.+|+...|+..|++.++.  .|+ ...|..|...|...+
T Consensus       190 lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~  266 (966)
T KOG4626|consen  190 LGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEAR  266 (966)
T ss_pred             hhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHh
Confidence            55566668999999999988887532 13467888888888999999999999998876  343 457888899999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHH
Q 038914          313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT-VVTYHTLFLGLFEVHQVEHALKLF  391 (570)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~  391 (570)
                      .++.|...+.+..... +.....+..+...|...|+++.|+..|++.++.  .|+ ...|+.+..++-..|+..+|...+
T Consensus       267 ~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY  343 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY  343 (966)
T ss_pred             cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence            9999999999888764 345677888888899999999999999999886  343 568899999999999999999999


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 038914          392 DEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA  471 (570)
Q Consensus       392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  471 (570)
                      ...+... +.-....+.+...|...|.++.|..+|....+.. +--...++.|...|-+.|++++|+..|++.++  +.|
T Consensus       344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P  419 (966)
T KOG4626|consen  344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP  419 (966)
T ss_pred             HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence            9888763 4456788889999999999999999999888754 44466788899999999999999999999988  677


Q ss_pred             Ch-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 038914          472 DV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSI  548 (570)
Q Consensus       472 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~  548 (570)
                      +. ..|+.++..|-..|+.+.|+..+.+++.  +.|. ...++.|...|-.+|+..+|+.-+++.++  ++|| ...+..
T Consensus       420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cN  495 (966)
T KOG4626|consen  420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCN  495 (966)
T ss_pred             hHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhH
Confidence            75 7899999999999999999999999888  5676 45788899999999999999999999884  4676 345555


Q ss_pred             HHHHH
Q 038914          549 VVDLL  553 (570)
Q Consensus       549 l~~~~  553 (570)
                      ++.++
T Consensus       496 llh~l  500 (966)
T KOG4626|consen  496 LLHCL  500 (966)
T ss_pred             HHHHH
Confidence            55553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=2e-23  Score=213.02  Aligned_cols=486  Identities=11%  Similarity=0.020  Sum_probs=305.4

Q ss_pred             HhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914           41 RFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF  120 (570)
Q Consensus        41 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  120 (570)
                      .+-..|......|++++|+..|+.+++.+|  .+..++..++..|.+.|++++|+..++++++.  .|+...+..++..+
T Consensus        46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i  121 (987)
T PRK09782         46 PRLDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI  121 (987)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh
Confidence            333344445567899999999999999999  67999999999999999999999999999998  67766666665433


Q ss_pred             HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCCcccCCC
Q 038914          121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING--------LCRTGHTIVALNLFEEMANGNGEIGVVCKPD  192 (570)
Q Consensus       121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  192 (570)
                                +++++|..+|+++.+.. +-+..++..+...        |.+.   ++|.+.++ .....      ..|+
T Consensus       122 ----------~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~------~~~~  180 (987)
T PRK09782        122 ----------PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFA------ASPE  180 (987)
T ss_pred             ----------ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhC------CCCC
Confidence                      47888889999888773 2234444444444        4444   33444443 22211      1223


Q ss_pred             hhhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038914          193 TVTYTT-IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-ANDWNEAKHLFIEMMDQGVQPNVVTFTVIM  270 (570)
Q Consensus       193 ~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  270 (570)
                      ..+... +..+|.+.|++++|++++.++.+.+. .+......|...|.. .++ +++..+++..    ++-+......++
T Consensus       181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala  254 (987)
T PRK09782        181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYA  254 (987)
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHH
Confidence            333333 36777777777777777777766542 233334444444444 233 4444443321    112344444444


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCC--------------------------------------------------------
Q 038914          271 DELCKNGKMDGASRLLELMILRGV--------------------------------------------------------  294 (570)
Q Consensus       271 ~~~~~~g~~~~a~~~~~~~~~~~~--------------------------------------------------------  294 (570)
                      ..+.+.|+.++|.++++++.....                                                        
T Consensus       255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (987)
T PRK09782        255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK  334 (987)
T ss_pred             HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            445555554444444433221100                                                        


Q ss_pred             --------------------------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-------
Q 038914          295 --------------------------------------KPDTSTYNTLIDGYCLTGKIDRARELFVSMESN-G-------  328 (570)
Q Consensus       295 --------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------  328 (570)
                                                            +-+......+.......|+.++|.++++..... +       
T Consensus       335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  414 (987)
T PRK09782        335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT  414 (987)
T ss_pred             HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence                                                  000011111111122334444444444433221 0       


Q ss_pred             --------------------------------------------------------CCC--CHhhHHHHHHHHHhcCCHH
Q 038914          329 --------------------------------------------------------CMH--DVVSYSILINGYCKTKDVE  350 (570)
Q Consensus       329 --------------------------------------------------------~~~--~~~~~~~l~~~~~~~~~~~  350 (570)
                                                                              .++  +...|..+..++.. ++.+
T Consensus       415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~  493 (987)
T PRK09782        415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG  493 (987)
T ss_pred             HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence                                                                    011  23344444444444 5666


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          351 EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR  430 (570)
Q Consensus       351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  430 (570)
                      +|+..+.+....  .|+......+...+...|++++|...++.+...  +|+...+..+..++.+.|++++|...++++.
T Consensus       494 eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL  569 (987)
T PRK09782        494 VALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE  569 (987)
T ss_pred             HHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            677766666654  344433333444456788888888888877554  3344445566677788888888888888887


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHH
Q 038914          431 ILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFV  509 (570)
Q Consensus       431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~  509 (570)
                      +.. +.+...+..+.......|++++|...+++..+.  .|+...+..++.++.+.|++++|+..++++...  .| +..
T Consensus       570 ~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~  644 (987)
T PRK09782        570 QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSN  644 (987)
T ss_pred             hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence            764 334444444444555669999999999988874  567778888888999999999999999998885  45 566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      .+..+..++...|++++|+..+++.++.. +-+...+..+..++...|++++|+..|++
T Consensus       645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        645 YQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77788888889999999999999988653 34577888899999999999998888765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-25  Score=201.37  Aligned_cols=438  Identities=15%  Similarity=0.101  Sum_probs=361.7

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      ..+.|++.+|++...-..+.+|  .+......+...+.+..+++...+.-..+++.. ..-..+|..+-..+.       
T Consensus        58 ~yq~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k-------  127 (966)
T KOG4626|consen   58 LYQGGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK-------  127 (966)
T ss_pred             HHhccCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH-------
Confidence            3578999999999999998888  566666667778888888888877777776653 123344444544444       


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh-hHHHHHHHHHhcC
Q 038914          129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV-TYTTIIDGLCKKG  207 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g  207 (570)
                      ..|++++|+.+|+.+++.. +.....|..+..++...|+.+.|.+.|...++.+        |+.. ....+...+...|
T Consensus       128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--------P~l~ca~s~lgnLlka~G  198 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--------PDLYCARSDLGNLLKAEG  198 (966)
T ss_pred             HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--------cchhhhhcchhHHHHhhc
Confidence            4569999999999999874 2367889999999999999999999999999865        5544 4445666677789


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHH
Q 038914          208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-VVTFTVIMDELCKNGKMDGASRLL  286 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~  286 (570)
                      +.++|...|.+.++... -=...|..|...+..+|+.-.|++.|++..+.  .|+ ...|..|...|...+.+++|...|
T Consensus       199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y  275 (966)
T KOG4626|consen  199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCY  275 (966)
T ss_pred             ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence            99999999999988632 23568999999999999999999999999985  444 478899999999999999999999


Q ss_pred             HHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038914          287 ELMILRGVKPD-TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR  365 (570)
Q Consensus       287 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  365 (570)
                      .+....  .|+ ...+..+...|..+|.++.|+..+++.++.. +.-...|+.|..++-..|++.+|...|.+.+.... 
T Consensus       276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-  351 (966)
T KOG4626|consen  276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-  351 (966)
T ss_pred             HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence            998875  444 4677778888999999999999999999874 33567899999999999999999999999998632 


Q ss_pred             CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038914          366 PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLI  445 (570)
Q Consensus       366 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  445 (570)
                      ....+.+.+...+...|.+++|..+|....+.. +.-...++.+...|.+.|++++|+..+++++... +.-...|+.+.
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmG  429 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMG  429 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcc
Confidence            256788999999999999999999999988753 3345678889999999999999999999998764 44467899999


Q ss_pred             HHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038914          446 DGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGF  518 (570)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~  518 (570)
                      ..|-..|+.+.|.+.+.++++  +.|.- ..++.|...|-..|+..+|+.-+++.++  ++|| +..|-.++.++
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL  500 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence            999999999999999999998  45654 7899999999999999999999999998  6787 34565555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=4.2e-21  Score=196.24  Aligned_cols=258  Identities=8%  Similarity=-0.022  Sum_probs=202.8

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914          298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG  377 (570)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  377 (570)
                      ...+..+..++.. ++.++|...+.+.....  |+......+...+...|++++|+..|+++...  +|+...+..+...
T Consensus       477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a  551 (987)
T PRK09782        477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT  551 (987)
T ss_pred             HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence            3444555555554 67778888777777653  45444444455567899999999999998664  4455556677788


Q ss_pred             HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038914          378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIA  457 (570)
Q Consensus       378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  457 (570)
                      +...|+.++|...++...+.. +.....+..+.......|++++|...+++..+..  |+...+..+..++.+.|++++|
T Consensus       552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA  628 (987)
T PRK09782        552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAA  628 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHH
Confidence            899999999999999998764 3333444444445556699999999999999774  5788999999999999999999


Q ss_pred             HHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          458 WELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      ...+++..+.. +.+...++.++.++...|++++|+..++++++.  .| +...+..+..++...|++++|...+++..+
T Consensus       629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99999999863 345678889999999999999999999999985  45 577889999999999999999999999996


Q ss_pred             CCCCCC-HHHHHHHHHHHHccCcccccchhhhh
Q 038914          537 RNVMPD-ASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       537 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      .  .|+ ..+.....+...+..+.+.+.+.++|
T Consensus       706 l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r  736 (987)
T PRK09782        706 D--IDNQALITPLTPEQNQQRFNFRRLHEEVGR  736 (987)
T ss_pred             c--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4  455 46777778888887777777776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.94  E-value=2.4e-21  Score=194.83  Aligned_cols=397  Identities=13%  Similarity=0.011  Sum_probs=262.1

Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                      .+...|..+...|++++|+..|++.+..  .|+...|..+..+|.+.|++++|+..++.+++.+       +.+...|..
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~  199 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNR  199 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHH
Confidence            3445566677788999999999999886  5677788899999999999999999999999875       456789999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH------------
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF------------  266 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------  266 (570)
                      +..+|...|++++|+..|..+...+...+.. ...++..+..    ..+........+.. +.+...+            
T Consensus       200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~  273 (615)
T TIGR00990       200 RANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYLQSFRP  273 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccC
Confidence            9999999999999999887765542211211 1111111111    11111111111110 0011111            


Q ss_pred             ---------------------HHHHHH---HHhcCChhHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHH
Q 038914          267 ---------------------TVIMDE---LCKNGKMDGASRLLELMILRG-VKP-DTSTYNTLIDGYCLTGKIDRAREL  320 (570)
Q Consensus       267 ---------------------~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~  320 (570)
                                           ..+...   ....+++++|.+.|+.++..+ ..| ....+..+..++...|++++|+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~  353 (615)
T TIGR00990       274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD  353 (615)
T ss_pred             CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                 111111   012356777888888777653 122 334566667777778888888888


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 038914          321 FVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVA  400 (570)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  400 (570)
                      ++++.... +.....|..+..++...|++++|+..|+++++.. +.+...+..+...+...|++++|...|+...+.. +
T Consensus       354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P  430 (615)
T TIGR00990       354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P  430 (615)
T ss_pred             HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence            88877663 2345567777777778888888888888777653 2245677777777778888888888887777654 3


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hh----
Q 038914          401 ANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VT----  475 (570)
Q Consensus       401 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~----  475 (570)
                      .+...+..+..++.+.|++++|+..|++..... +.+...++.+..++...|++++|...|++..+..  |+. ..    
T Consensus       431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~  507 (615)
T TIGR00990       431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNV  507 (615)
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccH
Confidence            455666677777777888888888888777654 4556777777778888888888888888777642  221 11    


Q ss_pred             ---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          476 ---YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       476 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                         ++..+..+...|++++|..+++++.... +.+...+..+...+...|++++|++++++..+.
T Consensus       508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence               1112222334578888888888777642 223446677777888888888888888887643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.2e-21  Score=184.37  Aligned_cols=472  Identities=14%  Similarity=0.085  Sum_probs=232.6

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-------
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN-------  123 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------  123 (570)
                      ..|+|..|+.+|..++..+| ..-+.....++.++.+.|+.+.|+..|.+++..  .|+.......+..+...       
T Consensus       176 nkkdY~~al~yyk~al~inp-~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~  252 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRINP-ACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSY  252 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcCc-ccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHH
Confidence            35566666666666666555 233344445555566666666666666666554  22221111111111000       


Q ss_pred             --------------C----------CcchhhCCHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038914          124 --------------G----------SSLCVESRIMEAAALFTKLRVFGCE--PDVFTYNTLINGLCRTGHTIVALNLFEE  177 (570)
Q Consensus       124 --------------~----------~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (570)
                                    +          ..+...|++..+..+.+.+......  .-...|..+.++|-..|++++|..+|.+
T Consensus       253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~  332 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME  332 (1018)
T ss_pred             HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence                          0          2222334445555444444433100  0112244444555555555555555555


Q ss_pred             HHhCCCCCCcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 038914          178 MANGNGEIGVVCKPD-TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAN----DWNEAKHLFI  252 (570)
Q Consensus       178 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~  252 (570)
                      ..+.+.       .+ +..+..|++.+.+.|+++.+...|+.+... .+-+..+...|...|...+    ..+.|..++.
T Consensus       333 s~k~~~-------d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~  404 (1018)
T KOG2002|consen  333 SLKADN-------DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG  404 (1018)
T ss_pred             HHccCC-------CCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence            544331       11 223334445555555555555555554443 2223344444444444332    2233333333


Q ss_pred             HHHHC-------------------------------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 038914          253 EMMDQ-------------------------------------GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR---  292 (570)
Q Consensus       253 ~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---  292 (570)
                      +..+.                                     +-.+.+...|.+...+...|++++|...|......   
T Consensus       405 K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~  484 (1018)
T KOG2002|consen  405 KVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE  484 (1018)
T ss_pred             HHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence            33332                                     22233444555555555555555555555554433   


Q ss_pred             CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038914          293 GVKPDT------STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP  366 (570)
Q Consensus       293 ~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  366 (570)
                      ...++.      .+-..+.++.-..++.+.|.+.|..+.... +.-+..|..++.+....+...+|...+..+...+ ..
T Consensus       485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~  562 (1018)
T KOG2002|consen  485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS  562 (1018)
T ss_pred             hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence            011111      122223334444445555555555555431 1122223333322223345555555555555432 22


Q ss_pred             ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcC
Q 038914          367 TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCK------------NGYIVKAVELFRTLRILK  433 (570)
Q Consensus       367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~  433 (570)
                      ++..+..+...+.....+..|.+-|..+.+.- ..+|..+...|.+.|.+            .+..++|+++|.++....
T Consensus       563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d  642 (1018)
T KOG2002|consen  563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND  642 (1018)
T ss_pred             CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence            34444445555555555555555554444321 12455555555554443            234566777777766655


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHH
Q 038914          434 YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL-EPNFVIFN  512 (570)
Q Consensus       434 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~  512 (570)
                       |-|...-|.+.-+++..|++.+|..+|.++.+.. .....+|..++++|..+|+|..|+++|+...+.-. ..+..+..
T Consensus       643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~  720 (1018)
T KOG2002|consen  643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH  720 (1018)
T ss_pred             -cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence             5566666777777777777777777777776642 23456677777777777777777777776655422 23456666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          513 TLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       513 ~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      .|.+++.+.|.+.+|.+.+......
T Consensus       721 ~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  721 YLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            7777777777777777777666643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=1e-20  Score=190.39  Aligned_cols=257  Identities=17%  Similarity=0.106  Sum_probs=210.1

Q ss_pred             cCCHHHHHHHHHHHHHCC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914          241 ANDWNEAKHLFIEMMDQG-VQP-NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRAR  318 (570)
Q Consensus       241 ~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  318 (570)
                      .+++++|...|+.....+ ..| ....+..+...+...|++++|+..+++.+... +.....+..+..++...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            478999999999999864 222 45678888889999999999999999999863 224567888889999999999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 038914          319 ELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH  398 (570)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  398 (570)
                      ..|+++.+.. +.+..++..+..++...|++++|+..|++.+.... .+...+..+...+.+.|++++|+..++...+..
T Consensus       386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999998875 45678899999999999999999999999998632 256677888899999999999999999988763


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 038914          399 VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIV------SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD  472 (570)
Q Consensus       399 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  472 (570)
                       +.+...+..+..++...|++++|...|++........+..      .++.....+...|++++|..++++..+.. +.+
T Consensus       464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~  541 (615)
T TIGR00990       464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PEC  541 (615)
T ss_pred             -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCc
Confidence             5567888999999999999999999999998764221111      11222223445799999999999988853 234


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      ...+..++.++...|++++|+++|+++.+.
T Consensus       542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       542 DIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            467889999999999999999999999874

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.92  E-value=6.7e-20  Score=175.51  Aligned_cols=491  Identities=14%  Similarity=0.090  Sum_probs=292.5

Q ss_pred             hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCcchhhCC
Q 038914           55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYAYNILINCFLQNGSSLCVESR  132 (570)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~  132 (570)
                      ++.|.+.|...++..|  +|...+..-+......|+|..|+.+|..++...+  .||...   .+..|      +++.|+
T Consensus       146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI---gig~C------f~kl~~  214 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI---GIGHC------FWKLGM  214 (1018)
T ss_pred             HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc---hhhhH------HHhccc
Confidence            6999999999999998  8988888888888889999999999999877632  344322   22222      223468


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          133 IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT---GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       133 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                      .+.|+..|++.++.++ .++.++-.|...-...   ..+..+..++..+-..+       ..++...+.|...|.-.|++
T Consensus       215 ~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-------~~nP~~l~~LAn~fyfK~dy  286 (1018)
T KOG2002|consen  215 SEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-------NENPVALNHLANHFYFKKDY  286 (1018)
T ss_pred             hhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-------CCCcHHHHHHHHHHhhcccH
Confidence            8888888888877632 1233333332222222   23445566666655544       34555666666666666666


Q ss_pred             HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914          210 DKAKELFLKMKDENIN--PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE  287 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  287 (570)
                      ..+.++...+......  .-...|-.+.++|-..|++++|..+|.+..+....--...+.-+...+.+.|+++.+...|+
T Consensus       287 ~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE  366 (1018)
T KOG2002|consen  287 ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE  366 (1018)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence            6666666655543211  12334555666666666666666666655554211112233345555666666666666666


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHHHHH-------------------------------------h
Q 038914          288 LMILRGVKPDTSTYNTLIDGYCLTG----KIDRARELFVSME-------------------------------------S  326 (570)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~-------------------------------------~  326 (570)
                      .+.... +.+..+...+...|...+    ..+.|..++.+..                                     .
T Consensus       367 kv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~  445 (1018)
T KOG2002|consen  367 KVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES  445 (1018)
T ss_pred             HHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            655541 223334444444443332    2233333333322                                     2


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCh------hhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914          327 NGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK---GIRPTV------VTYHTLFLGLFEVHQVEHALKLFDEMRRN  397 (570)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  397 (570)
                      .+..+.+...|.+...+...|++++|...|......   ...++.      .+-..+...+-..++.+.|.++|..+.+.
T Consensus       446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke  525 (1018)
T KOG2002|consen  446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE  525 (1018)
T ss_pred             cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            333445556666666666677777777777666553   111222      12223333334445555555555555443


Q ss_pred             CC---------------------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHH
Q 038914          398 HV---------------------------------AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK-YELNIVSYNC  443 (570)
Q Consensus       398 ~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~  443 (570)
                      .+                                 ..++..+..+...+.+...+..|..-|+.+.+.. ..+|+.+..+
T Consensus       526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia  605 (1018)
T KOG2002|consen  526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA  605 (1018)
T ss_pred             CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence            21                                 1112222222223333333333333333222211 1235555555


Q ss_pred             HHHHHHh------------cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 038914          444 LIDGLCK------------HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIF  511 (570)
Q Consensus       444 l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  511 (570)
                      |...|.+            .+..++|+++|.++++.. +.|...-|.++.+++..|++.+|..+|.+..+.. .....+|
T Consensus       606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~  683 (1018)
T KOG2002|consen  606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVW  683 (1018)
T ss_pred             hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCcee
Confidence            5555542            245678999999988863 5577888899999999999999999999998863 2356788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914          512 NTLMLGFIRNNETSKVIELLHRMDM-RNVMPDASTLSIVVDLLVKNEISLNSIPQFK  567 (570)
Q Consensus       512 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  567 (570)
                      ..+..+|..+|+|..|++.|+...+ ..-..+..+...|..++.+.|++.++.+...
T Consensus       684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll  740 (1018)
T KOG2002|consen  684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL  740 (1018)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            8999999999999999999999874 4445578899999999999999988876543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=1.6e-21  Score=186.61  Aligned_cols=300  Identities=16%  Similarity=0.151  Sum_probs=188.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCH
Q 038914          238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD---TSTYNTLIDGYCLTGKI  314 (570)
Q Consensus       238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~  314 (570)
                      +...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++   ...+..++..|...|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            3445555555555555555421 2334455555555555666666666555554321111   13445556666666666


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhhcCCHHHHHHH
Q 038914          315 DRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV----VTYHTLFLGLFEVHQVEHALKL  390 (570)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~  390 (570)
                      ++|..+|+++.+.. +.+..++..++.++...|++++|++.++.+.+.+..+..    ..+..+...+...|++++|...
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            66666666665542 234555666666666666666666666666654322211    1234455566667777777777


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 038914          391 FDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLM  470 (570)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  470 (570)
                      ++++.+.. +.+...+..++..+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+.  .
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  279 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y  279 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            77776543 33455666677777778888888888887776532222355677777888888888888888887774  4


Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          471 ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR---NNETSKVIELLHRMDMRNVMPDAS  544 (570)
Q Consensus       471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~  544 (570)
                      |+...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.++++.++++|.+.++.|++.
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            56666677788888888888888888887773  5777777777766554   457788888888888766666654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=6.6e-20  Score=183.60  Aligned_cols=332  Identities=14%  Similarity=0.069  Sum_probs=242.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914          155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL  234 (570)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (570)
                      ....+..+.+.|++++|+.+++......       +.+...+..++.+....|++++|++.++++.... +.+...+..+
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~l  116 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLV  116 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            4455666777888888888888888764       4446667777777778888888888888888763 3356777788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 038914          235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKI  314 (570)
Q Consensus       235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  314 (570)
                      ...+...|++++|...++++.... +.+...+..++.++...|++++|...++.+...... +...+..+ ..+...|++
T Consensus       117 a~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~  193 (656)
T PRK15174        117 ASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL  193 (656)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence            888888888888888888888752 234566777788888888888888888877665322 22233233 346778888


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHH----HHHH
Q 038914          315 DRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEH----ALKL  390 (570)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~  390 (570)
                      ++|...++.+......++...+..+..++...|++++|+..++++..... .+...+..+...+...|++++    |...
T Consensus       194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~  272 (656)
T PRK15174        194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEH  272 (656)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence            88888888877664333444455556777888888888888888887632 255667777888888888875    7888


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 038914          391 FDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLM  470 (570)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  470 (570)
                      ++.+.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...++.+.+.  .
T Consensus       273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~  348 (656)
T PRK15174        273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K  348 (656)
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence            88887764 4466777788888888888888888888887765 455667777788888888888888888888774  3


Q ss_pred             CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          471 ADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       471 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      |+. ..+..++.++...|++++|...|+++.+.
T Consensus       349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            443 33444566778888888888888888764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=6.1e-20  Score=183.82  Aligned_cols=323  Identities=9%  Similarity=0.016  Sum_probs=260.0

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCCcchh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA-YNILINCFLQNGSSLCV  129 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~  129 (570)
                      ..|++++|+.+++.++...|  .+..++..++.+....|++++|++.|++++..  .|+... +..+...       +..
T Consensus        54 ~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~-------l~~  122 (656)
T PRK15174         54 RKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASV-------LLK  122 (656)
T ss_pred             hcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH-------HHH
Confidence            47899999999999999998  67788888889999999999999999999987  555443 3333333       334


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                      .|++++|+..+++++... +.+..++..++.++...|++++|...++.+....       +.+...+..+ ..+...|++
T Consensus       123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~g~~  193 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNKSRL  193 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHcCCH
Confidence            579999999999999863 3356778889999999999999999999887754       2334444443 347889999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH----HHHH
Q 038914          210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG----ASRL  285 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~  285 (570)
                      ++|++.++.+......++...+..+...+...|++++|+..++.+.... +.+...+..+...+...|++++    |...
T Consensus       194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~  272 (656)
T PRK15174        194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH  272 (656)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence            9999999998876433445555666788889999999999999999864 3366778889999999999986    8999


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038914          286 LELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR  365 (570)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  365 (570)
                      ++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|+..|+++...+  
T Consensus       273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--  348 (656)
T PRK15174        273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--  348 (656)
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence            99998864 3366788889999999999999999999998875 4466778888999999999999999999998763  


Q ss_pred             CCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 038914          366 PTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNH  398 (570)
Q Consensus       366 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  398 (570)
                      |+. ..+..+..++...|+.++|...|+...+..
T Consensus       349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            333 334445677889999999999999988764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=1.8e-19  Score=184.45  Aligned_cols=405  Identities=11%  Similarity=-0.014  Sum_probs=227.8

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV  152 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  152 (570)
                      .+..-..-.+.+....|+.++|++++.++.... +.+...+..+...+..       .|++++|..+|++.+... +.+.
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~-------~g~~~~A~~~~~~al~~~-P~~~   83 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRN-------LKQWQNSLTLWQKALSLE-PQND   83 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhC-CCCH
Confidence            444555556666677788888887777777531 2223334444434433       357778888887777652 2245


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914          153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT  232 (570)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  232 (570)
                      ..+..++.++...|++++|+..++++.+..       +.+.. +..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus        84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~  154 (765)
T PRK10049         84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT  154 (765)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            556667777777788888888888777754       34455 7777777777788888888887777753 22555566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHh-----cCCh---hHHHHHHHHHHHC-CCCCC
Q 038914          233 SLICGFCYANDWNEAKHLFIEMMDQGVQPNV------VTFTVIMDELCK-----NGKM---DGASRLLELMILR-GVKPD  297 (570)
Q Consensus       233 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~  297 (570)
                      .+...+...+..++|+..++.+..   .|+.      .....++.....     .+++   ++|++.++.+.+. ...|+
T Consensus       155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~  231 (765)
T PRK10049        155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD  231 (765)
T ss_pred             HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            666777777777777777765543   1211      011112222211     1223   5566666666643 11222


Q ss_pred             Hh-hH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---Chh
Q 038914          298 TS-TY----NTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP---TVV  369 (570)
Q Consensus       298 ~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~  369 (570)
                      .. .+    ...+..+...|++++|+..|+.+...+.+........+..+|...|++++|+..|+++.......   ...
T Consensus       232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~  311 (765)
T PRK10049        232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE  311 (765)
T ss_pred             cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence            11 11    11122334556777777777777665421111122224556777777777777777766542111   123


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----------CcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHV-----------AAN---TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE  435 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  435 (570)
                      ....+..++...|++++|..+++.+.....           .|+   ...+..+...+...|++++|+..++++.... |
T Consensus       312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P  390 (765)
T PRK10049        312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P  390 (765)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            344555566677777777777776665421           011   1233344455555666666666666655543 4


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          436 LNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .+...+..++..+...|++++|++.++++...  .|+ ...+..++..+...|++++|..+++++++
T Consensus       391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        391 GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44555566666666666666666666666553  233 34444555555566666666666666665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=5.9e-21  Score=182.76  Aligned_cols=303  Identities=14%  Similarity=0.085  Sum_probs=187.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 038914          158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPN---AVTYTSL  234 (570)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l  234 (570)
                      ....+...|++++|+..|+++.+.+       +.+..++..++..+...|++++|..+++.+...+..++   ..++..+
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            3455667788888999999988865       44566788888888888888888888888877532211   2456777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHh
Q 038914          235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCL  310 (570)
Q Consensus       235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~  310 (570)
                      +..|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+..    ..+..++..+..
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  192 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA  192 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence            788888888888888888887652 335667777888888888888888888887765422211    123445556666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 038914          311 TGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKL  390 (570)
Q Consensus       311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  390 (570)
                      .|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++...+......++..++.++...|++++|...
T Consensus       193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~  271 (389)
T PRK11788        193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF  271 (389)
T ss_pred             CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            677777777777766543 2234455566666666666666666666666542221123344555555555555555555


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHhhhhC
Q 038914          391 FDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK---HGRLEIAWELFSSLPRV  467 (570)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~  467 (570)
                      ++.+.+..  |+...+..++..+.+.|++++|..+++++.+.  .|+...++.++..+..   .|+.+++..+++++.+.
T Consensus       272 l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        272 LRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            55555432  33333445555555555555555555555443  3444455544444332   33555555555555554


Q ss_pred             CCCCCh
Q 038914          468 GLMADV  473 (570)
Q Consensus       468 ~~~~~~  473 (570)
                      ++.|++
T Consensus       348 ~~~~~p  353 (389)
T PRK11788        348 QLKRKP  353 (389)
T ss_pred             HHhCCC
Confidence            444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=5.5e-19  Score=180.97  Aligned_cols=404  Identities=13%  Similarity=0.039  Sum_probs=304.3

Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                      .|+.++|++++.++.... +.+...+..+..++...|++++|+.+++++.+..       +.+...+..++.++...|++
T Consensus        28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQY   99 (765)
T ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCH
Confidence            359999999999998632 3445568899999999999999999999999865       55677888999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      ++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..++|+..++.+
T Consensus       100 ~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        100 DEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            9999999999987 344666 888999999999999999999999997433 5566677888888899999999988876


Q ss_pred             HHCCCCCCH------hhHHHHHHHHHh-----cCCH---HHHHHHHHHHHhC-CCCCCHh-hH----HHHHHHHHhcCCH
Q 038914          290 ILRGVKPDT------STYNTLIDGYCL-----TGKI---DRARELFVSMESN-GCMHDVV-SY----SILINGYCKTKDV  349 (570)
Q Consensus       290 ~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~  349 (570)
                      ..   .|+.      .....+++....     .+++   ++|+..++.+.+. ...|+.. .+    ...+..+...|++
T Consensus       177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~  253 (765)
T PRK10049        177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY  253 (765)
T ss_pred             CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence            54   2221      112222222221     2234   7788888888754 1122221 11    1113345677999


Q ss_pred             HHHHHHHHHHHhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          350 EEGLNLYRKMLSKGIR-PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAA---NTYIYTTFIDGLCKNGYIVKAVEL  425 (570)
Q Consensus       350 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~  425 (570)
                      ++|+..|+.+.+.+.. |+. ....+...+...|++++|+..|+.+.+.....   .......+..++...|++++|..+
T Consensus       254 ~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~  332 (765)
T PRK10049        254 KDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV  332 (765)
T ss_pred             HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            9999999999987532 322 23335778999999999999999987653211   134455666778899999999999


Q ss_pred             HHHHHHcCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          426 FRTLRILKY-----------ELN---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       426 ~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      ++.+.....           .|+   ...+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++
T Consensus       333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~  411 (765)
T PRK10049        333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRA  411 (765)
T ss_pred             HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence            999886531           122   2345567778899999999999999998852 4566788999999999999999


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914          492 AHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL  553 (570)
Q Consensus       492 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  553 (570)
                      |++.+++++..  .|+ ...+...+..+...|++++|..+++++++.  .|+......+-..+
T Consensus       412 A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~  470 (765)
T PRK10049        412 AENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            99999999984  565 566777778899999999999999999964  46655555554444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.91  E-value=1.8e-18  Score=173.38  Aligned_cols=440  Identities=12%  Similarity=0.015  Sum_probs=285.6

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      ..+.|+++.|+..|+.+++.+|  .+......++..+...|+.++|+..++++.    .|+...+..++...    ..+.
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P--~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA----~ly~  113 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGP--LQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAA----RAYR  113 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCc--cchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHH----HHHH
Confidence            3568899999999999998888  443222377778888899999999999988    23322222222110    1122


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914          129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF  208 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  208 (570)
                      ..|++++|+++|+++++..+ .+..++..++..+.+.++.++|++.++++....        |+...+..++..+...++
T Consensus       114 ~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~~l~layL~~~~~~  184 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQNYMTLSYLNRATDR  184 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHHHHHHHHHHHhcch
Confidence            34699999999999988743 246667777888888999999999999988754        555555555555555666


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHh---------cC
Q 038914          209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF--TVIMDELCK---------NG  277 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~---------~g  277 (570)
                      ..+|++.++++.+.+ +.+...+..++..+.+.|-...|.++..+-... ..+....+  ...+.-.++         ..
T Consensus       185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~  262 (822)
T PRK14574        185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETE  262 (822)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence            766999999998874 446777888888888888888888776653321 11111111  000001111         11


Q ss_pred             C---hhHHHHHHHHHHHC-CCCCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914          278 K---MDGASRLLELMILR-GVKPDT-S----TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKD  348 (570)
Q Consensus       278 ~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  348 (570)
                      +   .+.|+.-++.+... +..|.. .    ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...++
T Consensus       263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~  342 (822)
T PRK14574        263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL  342 (822)
T ss_pred             hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence            2   23344445554442 111221 1    1223345666778888888888888877655556677777888888888


Q ss_pred             HHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----------CcCH---HHHHHH
Q 038914          349 VEEGLNLYRKMLSKGI-----RPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV-----------AANT---YIYTTF  409 (570)
Q Consensus       349 ~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l  409 (570)
                      +++|+.+|+.+.....     .++......|..++...+++++|..+++.+.+..+           .|+.   .....+
T Consensus       343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~  422 (822)
T PRK14574        343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL  422 (822)
T ss_pred             cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence            8888888888766421     22333346777788888888888888888776321           1111   233345


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh
Q 038914          410 IDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM  489 (570)
Q Consensus       410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  489 (570)
                      +..+...|++.+|++.++.+.... |-|......+...+...|.+..|+..++.+... -+-+..+....+.++...|++
T Consensus       423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~  500 (822)
T PRK14574        423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEW  500 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhH
Confidence            566677788888888888776655 667777777777788888888888888666553 122345666677777777888


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHH
Q 038914          490 DKAHGLFLDMEAKGLEPNFVIFNT  513 (570)
Q Consensus       490 ~~A~~~~~~~~~~~~~p~~~~~~~  513 (570)
                      .+|..+.+.+.+.  .|+......
T Consensus       501 ~~A~~~~~~l~~~--~Pe~~~~~~  522 (822)
T PRK14574        501 HQMELLTDDVISR--SPEDIPSQE  522 (822)
T ss_pred             HHHHHHHHHHHhh--CCCchhHHH
Confidence            8887777777763  455444333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=9.9e-18  Score=168.17  Aligned_cols=442  Identities=11%  Similarity=0.013  Sum_probs=325.7

Q ss_pred             CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914           74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL--YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD  151 (570)
Q Consensus        74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (570)
                      .+......+....+.|+++.|+..|+++++.  .|+.  ..+ .++..+...       |+.++|+..+++...   +-+
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~-------G~~~~A~~~~eka~~---p~n   99 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWA-------GRDQEVIDVYERYQS---SMN   99 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHc-------CCcHHHHHHHHHhcc---CCC
Confidence            4445555666778999999999999999988  5554  233 555555554       699999999999983   213


Q ss_pred             cchHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          152 VFTYNTL--INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAV  229 (570)
Q Consensus       152 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  229 (570)
                      ...+..+  ...+...|++++|+++|+++.+.+       +.+...+..++..+...++.++|++.++++...  .|+..
T Consensus       100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~  170 (822)
T PRK14574        100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ  170 (822)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence            3333344  568888899999999999999986       455777888899999999999999999999886  44555


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh------HHH
Q 038914          230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTST------YNT  303 (570)
Q Consensus       230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~  303 (570)
                      .+..++..+...++..+|+..++++.+.. +-+...+..+..++.+.|-...|.++..+-... +.+....      ...
T Consensus       171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~  248 (822)
T PRK14574        171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAE  248 (822)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHH
Confidence            56555555555677777999999999974 336777888889999999999998877653321 1111111      111


Q ss_pred             HHHHH---H--hcC---CHHHHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914          304 LIDGY---C--LTG---KIDRARELFVSMESN-GCMHD-----VVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV  369 (570)
Q Consensus       304 l~~~~---~--~~~---~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  369 (570)
                      .++.-   .  ...   -.+.|+.-++.+... +..|.     .....-.+-++...+++.++++.|+.+...+.+....
T Consensus       249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y  328 (822)
T PRK14574        249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY  328 (822)
T ss_pred             HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence            11110   0  111   245566666666552 11122     1223345667888999999999999999887665566


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHV-----AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKY----------  434 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------  434 (570)
                      +...+..+|...+++++|+.++..+.....     +++......|..++...+++++|..+++.+.+...          
T Consensus       329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~  408 (822)
T PRK14574        329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG  408 (822)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence            788999999999999999999999876531     22334456788899999999999999999987321          


Q ss_pred             -CCCh---hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHH
Q 038914          435 -ELNI---VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFV  509 (570)
Q Consensus       435 -~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~  509 (570)
                       .|+.   ..+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|+..++.+...  .| +..
T Consensus       409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~  485 (822)
T PRK14574        409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLI  485 (822)
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHH
Confidence             1111   233456777889999999999999998753 557888999999999999999999999877764  55 456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAS  544 (570)
Q Consensus       510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  544 (570)
                      +....+.++...|++++|..+.+++...  .|+..
T Consensus       486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~  518 (822)
T PRK14574        486 LERAQAETAMALQEWHQMELLTDDVISR--SPEDI  518 (822)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence            6678888999999999999999999854  35543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=3.9e-19  Score=156.03  Aligned_cols=479  Identities=14%  Similarity=0.129  Sum_probs=315.2

Q ss_pred             hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHH
Q 038914           55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIM  134 (570)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  134 (570)
                      +.+|+..|+-+++..-.+.....-..++..+.+.+++.+|+++|+-++.+  .|+. .-..-|..+...|..+.+.|.++
T Consensus       217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsi-nk~~rikil~nigvtfiq~gqy~  293 (840)
T KOG2003|consen  217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSI-NKDMRIKILNNIGVTFIQAGQYD  293 (840)
T ss_pred             HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--cccc-chhhHHHHHhhcCeeEEecccch
Confidence            45666666666554432233333445667788888999999999888876  3322 12234566777888899999999


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc--cCCChhhHHHHHHHHHhcC-----
Q 038914          135 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVV--CKPDTVTYTTIIDGLCKKG-----  207 (570)
Q Consensus       135 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g-----  207 (570)
                      .|+..|+...+.  .|+..+-..|+-++...|+.++..+.|.++....++....  +++....-..|+.--.+..     
T Consensus       294 dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~  371 (840)
T KOG2003|consen  294 DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM  371 (840)
T ss_pred             hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence            999999998876  5676665555656666899999999999998765332111  1221111122222222111     


Q ss_pred             ---CHHHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          208 ---FVDKAKELFL---KMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       208 ---~~~~a~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                         +-..|++.+-   +++..-+.|+...      +      .+-+++.++.-....+.  ...-..-...+.+.|+++.
T Consensus       372 ek~~ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~la--~dlei~ka~~~lk~~d~~~  437 (840)
T KOG2003|consen  372 EKENKADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAELA--IDLEINKAGELLKNGDIEG  437 (840)
T ss_pred             HHhhhhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhhh--hhhhhhHHHHHHhccCHHH
Confidence               1111222221   1111111122100      0      01111111111110000  0011112335778999999


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCL--TGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKM  359 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  359 (570)
                      |.++++-+.+.+-......-+.|...+.-  -.++..|.+.-+..+..+ .-+......-.......|++++|.+.|++.
T Consensus       438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea  516 (840)
T KOG2003|consen  438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA  516 (840)
T ss_pred             HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence            99999988776433333333333332222  346777877777766543 224444444445566789999999999999


Q ss_pred             HhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 038914          360 LSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIV  439 (570)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  439 (570)
                      +..... ....+..+...+-..|+.++|+..|-.+... +..+..++..+...|....+..+|++++.+.... ++.|+.
T Consensus       517 l~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~  593 (840)
T KOG2003|consen  517 LNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA  593 (840)
T ss_pred             HcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence            875222 2233344445667889999999999776543 2446778888899999999999999999888665 477899


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML-GF  518 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~  518 (570)
                      ++..|...|-+.|+-.+|.+.+-+-.+. ++-+..+...|..-|....-+++++.+|+++.-  +.|+..-|..++. ++
T Consensus       594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~  670 (840)
T KOG2003|consen  594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF  670 (840)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence            9999999999999999999988777665 566888888899999999999999999999876  7899999977765 56


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccc
Q 038914          519 IRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISL  560 (570)
Q Consensus       519 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  560 (570)
                      .+.|++++|..++++..+. ++.|...+..++..+...|..+
T Consensus       671 rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d  711 (840)
T KOG2003|consen  671 RRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD  711 (840)
T ss_pred             HhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence            6799999999999999864 6788999999999988887644

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=9.7e-17  Score=141.84  Aligned_cols=462  Identities=13%  Similarity=0.120  Sum_probs=353.0

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS  125 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  125 (570)
                      |....+++++..|..+|++++..+-  .+...|...+.+-.+++....|..++++++..-+..|...|.-+... -.   
T Consensus        80 aqwEesq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE-E~---  153 (677)
T KOG1915|consen   80 AQWEESQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME-EM---  153 (677)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH-HH---
Confidence            3344568889999999999998875  88899999999999999999999999999998555555554433321 11   


Q ss_pred             cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh
Q 038914          126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK  205 (570)
Q Consensus       126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  205 (570)
                          .|++.-|.++|++....  .|+..+|++.|..-.+....+.|..++++..-        +.|++.+|......=.+
T Consensus       154 ----LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k  219 (677)
T KOG1915|consen  154 ----LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEK  219 (677)
T ss_pred             ----hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHh
Confidence                36999999999999876  89999999999999999999999999999987        56999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChhH
Q 038914          206 KGFVDKAKELFLKMKDE-N-INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~  281 (570)
                      .|+...|.++|+...+. | -..+...+.++...-..+..++.|.-+|+-.+.. ++.+  ...|......=-+-|+...
T Consensus       220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~g  298 (677)
T KOG1915|consen  220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEG  298 (677)
T ss_pred             cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhh
Confidence            99999999999988764 1 1123445566666666778899999999988875 3323  3455555554445676555


Q ss_pred             HHHH--------HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHH--------HHHH
Q 038914          282 ASRL--------LELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV-VSYSILI--------NGYC  344 (570)
Q Consensus       282 a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~--------~~~~  344 (570)
                      ....        ++.+++.+ +.|-.+|-..++.-...|+.+...++|+.++..-.+.+. ..|...|        -.-.
T Consensus       299 IEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl  377 (677)
T KOG1915|consen  299 IEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL  377 (677)
T ss_pred             hHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4443        34455543 557778888888888899999999999999886422221 1122222        1123


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914          345 KTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF----EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV  420 (570)
Q Consensus       345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  420 (570)
                      ...+.+.+.++|+..++. ++....|+..+-..|+    ++.+...|.+++....  |..|...++...|..-.+.++++
T Consensus       378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD  454 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD  454 (677)
T ss_pred             HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence            578899999999999985 4445667776655554    5788999999998876  45788899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL-MADVVTYNIMIHGLCNDGQMDKAHGLFLDM  499 (570)
Q Consensus       421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  499 (570)
                      .+..++++.++.+ |-+..+|......-...|+.+.|..+|.-+++... ......|-..|..-...|.++.|..+++++
T Consensus       455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl  533 (677)
T KOG1915|consen  455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL  533 (677)
T ss_pred             HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence            9999999999887 67888999998888899999999999999987421 111234566666667899999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 038914          500 EAKGLEPNFVIFNTLMLGFI-----RNN-----------ETSKVIELLHRMD  535 (570)
Q Consensus       500 ~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~  535 (570)
                      ++.  .+...+|.+...--.     ..|           ....|..+|+++.
T Consensus       534 L~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  534 LDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             HHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            984  455667766654333     334           5567888888876

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.86  E-value=2.5e-15  Score=138.30  Aligned_cols=482  Identities=12%  Similarity=0.076  Sum_probs=343.9

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      ..++++|+.++.++.+-=|  .+...|..    |.+..-|+.|..++.++.+. ++.+...|...-..=-.       .|
T Consensus       389 lE~~~darilL~rAveccp--~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~-------ng  454 (913)
T KOG0495|consen  389 LEEPEDARILLERAVECCP--QSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEA-------NG  454 (913)
T ss_pred             ccChHHHHHHHHHHHHhcc--chHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHh-------cC
Confidence            3466778888888887766  56665554    44556778888888888765 23344444433322222       35


Q ss_pred             CHHHHHHHHHHHH----hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914          132 RIMEAAALFTKLR----VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG  207 (570)
Q Consensus       132 ~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  207 (570)
                      +.+...++..+-+    ..|+..+...|..=...|-..|..-.+..+.......+.+.    ..--.+|..-.+.|.+.+
T Consensus       455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe----ed~~~tw~~da~~~~k~~  530 (913)
T KOG0495|consen  455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE----EDRKSTWLDDAQSCEKRP  530 (913)
T ss_pred             CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc----chhHhHHhhhHHHHHhcc
Confidence            7777777766543    34666677777777777777788877777777777655221    122457888888888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914          208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE  287 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  287 (570)
                      -++-|..+|...++. ++-+...|...+..--..|..++...+++++... .+-....|......+...|+...|..++.
T Consensus       531 ~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~  608 (913)
T KOG0495|consen  531 AIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILD  608 (913)
T ss_pred             hHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence            888888888888775 3446677777777777778888888888888876 33355666777777788889999999888


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT  367 (570)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  367 (570)
                      ++.+.. +.+...+...+.......+++.|..+|.+....  .++..+|..-+...--.+..++|++++++.++.  .|+
T Consensus       609 ~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~  683 (913)
T KOG0495|consen  609 QAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD  683 (913)
T ss_pred             HHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence            888764 236677777888888888899999988888775  356777777777777778888999988888875  334


Q ss_pred             -hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038914          368 -VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID  446 (570)
Q Consensus       368 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  446 (570)
                       ...|..+.+.+-+.++.+.|...|..-.+. ++.....|..+...-.+.|.+-.|..++++....+ |-+...|...++
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir  761 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR  761 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence             346666777777888888888888766554 35556677777777778888889999998887766 677888888888


Q ss_pred             HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038914          447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSK  526 (570)
Q Consensus       447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  526 (570)
                      +-.+.|+.+.|..+..++++. ++.+...|..-|....+.++-......+++.     ..|+.....+...+....++++
T Consensus       762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~k  835 (913)
T KOG0495|consen  762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEK  835 (913)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHH
Confidence            889999999998888887775 3445566777776666666655555444433     3466667777777777788888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914          527 VIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFK  567 (570)
Q Consensus       527 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  567 (570)
                      |.++|.+.++.+ +..-.+|..+.....+.|..++-.+.|+
T Consensus       836 ar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~  875 (913)
T KOG0495|consen  836 AREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLK  875 (913)
T ss_pred             HHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            888888888543 2235677777777777776665555444

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=8.7e-16  Score=134.23  Aligned_cols=309  Identities=15%  Similarity=0.210  Sum_probs=213.5

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----------------------Ccchhh
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG----------------------SSLCVE  130 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~  130 (570)
                      ..+..=+.++. +..+|+.+.+.-+|+.|.+.|+..+...-..++.......                      ..-++.
T Consensus       114 ~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~  192 (625)
T KOG4422|consen  114 LQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS  192 (625)
T ss_pred             hhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence            44455555554 4577999999999999999998877766555554332221                      122333


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD  210 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  210 (570)
                      |.+.+   ++-+..    +.+..++..+|.++|+-...+.|.+++++.....      .+.+..+||.+|.+-.-...  
T Consensus       193 G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~~~--  257 (625)
T KOG4422|consen  193 GAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYSVG--  257 (625)
T ss_pred             ccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhhcc--
Confidence            33333   222222    3356788888888888888888888888887766      56778888888876554332  


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH-HHHH
Q 038914          211 KAKELFLKMKDENINPNAVTYTSLICGFCYANDWNE----AKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG-ASRL  285 (570)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~  285 (570)
                        .+++.+|......||..|+|+++.+..+.|+++.    |.+++.+|++.|+.|...+|..++..+.+.++..+ +..+
T Consensus       258 --K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~  335 (625)
T KOG4422|consen  258 --KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW  335 (625)
T ss_pred             --HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence              6778888888888888888888888888887765    45677788888888888888888888888777644 4444


Q ss_pred             HHHHHHC----CC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHhcCCHH
Q 038914          286 LELMILR----GV----KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNG----CMHD---VVSYSILINGYCKTKDVE  350 (570)
Q Consensus       286 ~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~  350 (570)
                      +.++...    .+    +.|...|...+..|.+..+.+.|.++..-+....    +.++   ..-|..+....++....+
T Consensus       336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~  415 (625)
T KOG4422|consen  336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID  415 (625)
T ss_pred             HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444321    12    2234556677777778888888877766554321    1122   122455666777777888


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC
Q 038914          351 EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV  399 (570)
Q Consensus       351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  399 (570)
                      .-...|+.|+-.-.-|+..+...++.+....+.++-.-+++.++...|.
T Consensus       416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh  464 (625)
T KOG4422|consen  416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH  464 (625)
T ss_pred             HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence            8888888888776777888888888888888888888888888776653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.84  E-value=5.6e-15  Score=141.31  Aligned_cols=466  Identities=13%  Similarity=0.055  Sum_probs=317.1

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      .+|++++|..++..+++++|  .+..+|..|+.+|-.+|+.+++...+-.+...  .| |...|..+-....       .
T Consensus       151 arg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~-------~  219 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSE-------Q  219 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH-------h
Confidence            46899999999999999999  89999999999999999999999988887766  44 3344444443333       3


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh----hHHHHHHHHHh
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV----TYTTIIDGLCK  205 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~  205 (570)
                      +|.+++|.-.|.++++.. +++...+-.-+..|-+.|+...|...|.++....      .+.|..    .-...+..+..
T Consensus       220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHH
Confidence            579999999999999885 3355555567788999999999999999999875      112222    22334566777


Q ss_pred             cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------------
Q 038914          206 KGFVDKAKELFLKMKDEN-INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG--------------------------  258 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------  258 (570)
                      .++-+.|.+.++.....+ -..+...++.++..+.+...++.+...........                          
T Consensus       293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~  372 (895)
T KOG2076|consen  293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK  372 (895)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence            788899999998887632 23356678889999999999999998888776621                          


Q ss_pred             -CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 038914          259 -VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRG--VKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVS  335 (570)
Q Consensus       259 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  335 (570)
                       ..++... ..++-++......+....+...+...+  +.-+...|.-+..++...|++.+|+.+|..+.......+...
T Consensus       373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v  451 (895)
T KOG2076|consen  373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV  451 (895)
T ss_pred             CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence             1122222 123334445555555555555565555  333456788899999999999999999999998766667788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHh--------CCCCcCHHHHH
Q 038914          336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRR--------NHVAANTYIYT  407 (570)
Q Consensus       336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~  407 (570)
                      |-.+..+|...|.++.|++.|.+.+... +-+...-..|...+.+.|+.++|.+.+..+..        ....|+.....
T Consensus       452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~  530 (895)
T KOG2076|consen  452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA  530 (895)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence            9999999999999999999999999862 22445666777788899999999999988542        23345555666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC----------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhh-
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILK----------------------YELNIVSYNCLIDGLCKHGRLEIAWELFSSL-  464 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  464 (570)
                      .....+.+.|+.++=..+...+....                      .+-.......+..+-.+.++......-...- 
T Consensus       531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~  610 (895)
T KOG2076|consen  531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT  610 (895)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence            66677778888776544443332110                      0111122222333333333322222111111 


Q ss_pred             -----hhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHH---HH-HHHHHHHHhcCCHHHHHHHHH
Q 038914          465 -----PRVGLMADV--VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL-EPNFV---IF-NTLMLGFIRNNETSKVIELLH  532 (570)
Q Consensus       465 -----~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~-~~l~~~~~~~g~~~~a~~~~~  532 (570)
                           ...++..+.  ..+..++.++++.+++++|+.+...+..... .-+..   .+ ...+.+.+..+++..|...+.
T Consensus       611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR  690 (895)
T KOG2076|consen  611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR  690 (895)
T ss_pred             hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence                 111122221  2345567778888888888888887776421 11222   22 334456677888888888888


Q ss_pred             HHHh
Q 038914          533 RMDM  536 (570)
Q Consensus       533 ~~~~  536 (570)
                      .|..
T Consensus       691 ~~i~  694 (895)
T KOG2076|consen  691 SVIT  694 (895)
T ss_pred             HHHH
Confidence            8873

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=1.8e-14  Score=132.75  Aligned_cols=452  Identities=12%  Similarity=0.032  Sum_probs=298.7

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038914           88 TKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH  167 (570)
Q Consensus        88 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  167 (570)
                      ..+.+.|+-++.++.++  -|.+.   .+.-+++++       ..|+.|..++.+..+. ++.+..+|......--.+|+
T Consensus       389 lE~~~darilL~rAvec--cp~s~---dLwlAlarL-------etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn  455 (913)
T KOG0495|consen  389 LEEPEDARILLERAVEC--CPQSM---DLWLALARL-------ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGN  455 (913)
T ss_pred             ccChHHHHHHHHHHHHh--ccchH---HHHHHHHHH-------HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCC
Confidence            34555566666666665  33222   122333333       3677777777777654 45566677666666666777


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHH
Q 038914          168 TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINP--NAVTYTSLICGFCYANDWN  245 (570)
Q Consensus       168 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~  245 (570)
                      .+....++++....-...|  +..+...|..=...|-..|..-.+..+....+..|+..  -..+|..-...|.+.+.++
T Consensus       456 ~~mv~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~  533 (913)
T KOG0495|consen  456 VDMVEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE  533 (913)
T ss_pred             HHHHHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence            7777777666543211111  45566677777777777777777777777777666542  2356777777777777788


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          246 EAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSME  325 (570)
Q Consensus       246 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  325 (570)
                      -|..+|...++. .+.+...|......--..|..++...+|+++... ++.....|......+-..|+...|..++..+.
T Consensus       534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af  611 (913)
T KOG0495|consen  534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF  611 (913)
T ss_pred             HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            888888777765 2334556666665555667777777788777765 23333445555566666788888888888777


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 038914          326 SNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYI  405 (570)
Q Consensus       326 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  405 (570)
                      +.. +.+...|...+.....+.+++.|..+|.+....  .|+...|..-+...--.+..++|++++++.++. ++.-...
T Consensus       612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl  687 (913)
T KOG0495|consen  612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKL  687 (913)
T ss_pred             HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHH
Confidence            764 336667777777777788888888888777664  456666666666666677788888888777765 2444556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh
Q 038914          406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN  485 (570)
Q Consensus       406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  485 (570)
                      |..+.+.+.+.++.+.|...|..-.+.. |.....|..+...-.+.|.+-.|..+++...-.+ +.+...|...+++-.+
T Consensus       688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR  765 (913)
T KOG0495|consen  688 WLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR  765 (913)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence            7777777777778888777776655543 5556677777777777778888888888776654 4466777778888888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchh
Q 038914          486 DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQ  565 (570)
Q Consensus       486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  565 (570)
                      .|+.+.|..+..++++. .+.+...|..-+...-+.++--.....+++-     .-|+...-.+...|....++++|.+-
T Consensus       766 ~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~W  839 (913)
T KOG0495|consen  766 AGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREW  839 (913)
T ss_pred             cCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877777665 4555666777676666666644444444433     45666777777777777777777766


Q ss_pred             hhh
Q 038914          566 FKR  568 (570)
Q Consensus       566 ~~~  568 (570)
                      |.|
T Consensus       840 f~R  842 (913)
T KOG0495|consen  840 FER  842 (913)
T ss_pred             HHH
Confidence            654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=2.9e-17  Score=144.41  Aligned_cols=458  Identities=13%  Similarity=0.085  Sum_probs=308.9

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC----
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD----  151 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----  151 (570)
                      .....|+.-|..+..+.+|+..|+-+++....|+...+.      ...|.++.+..++.+|++.|+-.+..-+..+    
T Consensus       202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk------mnigni~~kkr~fskaikfyrmaldqvpsink~~r  275 (840)
T KOG2003|consen  202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK------MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMR  275 (840)
T ss_pred             HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee------eeecceeeehhhHHHHHHHHHHHHhhccccchhhH
Confidence            345567777888889999999999999998888875432      3446788888999999999998776521111    


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT-  230 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-  230 (570)
                      ..+.+.+...+.+.|++++|+..|+...+..        |+..+-..|+-++...|+.++..+.|.+|+.....||..- 
T Consensus       276 ikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky  347 (840)
T KOG2003|consen  276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY  347 (840)
T ss_pred             HHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc
Confidence            2356677778899999999999999998854        7877767777778888999999999999986532222221 


Q ss_pred             -------HHHHHHHHHhcCCH--------HHHHHHH---HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          231 -------YTSLICGFCYANDW--------NEAKHLF---IEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       231 -------~~~l~~~~~~~~~~--------~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                             -..|+.--.+...+        ..|....   -+++.--+.|+-.           .| .+-+++.++.-...
T Consensus       348 i~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~  415 (840)
T KOG2003|consen  348 IKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHA  415 (840)
T ss_pred             cCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhh
Confidence                   12222221111111        1111111   1111111111110           01 11122222221111


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCChhh
Q 038914          293 GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYC--KTKDVEEGLNLYRKMLSKGIRPTVVT  370 (570)
Q Consensus       293 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~  370 (570)
                        +.-...-..-.--+.+.|+++.|+++++-..+.+-......-+.+-..+.  .-.++..|.++-+..+... .-+...
T Consensus       416 --~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a  492 (840)
T KOG2003|consen  416 --ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAA  492 (840)
T ss_pred             --hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHH
Confidence              00011111123356789999999999998877643333333333332222  2446778888777766542 123344


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914          371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK  450 (570)
Q Consensus       371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  450 (570)
                      ...-.......|++++|.+.+++.+.++.. ....+..+.-.+...|++++|+..|-++...- ..+..++..+...|..
T Consensus       493 ~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~  570 (840)
T KOG2003|consen  493 LTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYEL  570 (840)
T ss_pred             hhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence            444444556789999999999999876422 23333344456778899999999998876432 4577888889999999


Q ss_pred             cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          451 HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIEL  530 (570)
Q Consensus       451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  530 (570)
                      ..+..+|++++.+.... ++.|+.....|...|-+.|+-.+|.+.+-.--.. ++-+..+...|..-|....-+++++.+
T Consensus       571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999988775 5667788999999999999999999876554443 455788888888888888889999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHH-HHHHccCcccccchhhhh
Q 038914          531 LHRMDMRNVMPDASTLSIVV-DLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       531 ~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~  568 (570)
                      |++..  -+.|+..-|..++ +++.+.|++.+|.+.|+.
T Consensus       649 ~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~  685 (840)
T KOG2003|consen  649 FEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD  685 (840)
T ss_pred             HHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            99987  3689999998655 557789999999999874

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=3e-15  Score=130.88  Aligned_cols=430  Identities=16%  Similarity=0.197  Sum_probs=303.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChhHH-HHHHHHHHhCCCCCCcc-------------cCCChh
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLING--LCRTGHTIVA-LNLFEEMANGNGEIGVV-------------CKPDTV  194 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~-------------~~~~~~  194 (570)
                      |++..+.-+|+.|...|++.+...-..|.+.  |....+..-| .+.|-.|.+.+...+.+             .+.+..
T Consensus       129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e  208 (625)
T KOG4422|consen  129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE  208 (625)
T ss_pred             cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence            6999999999999999877776665555543  2233322211 23344444433222221             355678


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038914          195 TYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELC  274 (570)
Q Consensus       195 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (570)
                      ++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-..+    .++..+|......||..|+|.++.+..
T Consensus       209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~a  284 (625)
T KOG4422|consen  209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAA  284 (625)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence            9999999999999999999999999888788899999999876544333    788999999999999999999999999


Q ss_pred             hcCChhH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHhC----C----CCCCHhhHHHHHH
Q 038914          275 KNGKMDG----ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKID-RARELFVSMESN----G----CMHDVVSYSILIN  341 (570)
Q Consensus       275 ~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~----~----~~~~~~~~~~l~~  341 (570)
                      +.|+++.    |.+++.+|++.|+.|...+|..++..+.+.++.. .+..++.++...    .    .+.+...|...+.
T Consensus       285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~  364 (625)
T KOG4422|consen  285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS  364 (625)
T ss_pred             HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence            9998875    5678889999999999999999999998888764 455566655432    1    1235566777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914          342 GYCKTKDVEEGLNLYRKMLSKG----IRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLC  414 (570)
Q Consensus       342 ~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  414 (570)
                      .|....+.+-|.++-.-+....    +.|+   ..-|..+....+.....+.....|+.|.-+-.-|+..+...++++..
T Consensus       365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~  444 (625)
T KOG4422|consen  365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD  444 (625)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence            8889999999988877665431    2222   23456677778888999999999999998878889999999999998


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CH--------H-----HHHHHH-------HhhhhCCCCCCh
Q 038914          415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RL--------E-----IAWELF-------SSLPRVGLMADV  473 (570)
Q Consensus       415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~~~~~~~~~  473 (570)
                      -.+.++-.-+++..++..|...+......++..+++.. +.        .     -|..++       .++.+  .....
T Consensus       445 v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~  522 (625)
T KOG4422|consen  445 VANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPA  522 (625)
T ss_pred             hcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCCh
Confidence            89999988888888877664444444333333333332 11        0     011111       11222  23445


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKG----LEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAS-TLSI  548 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~  548 (570)
                      ...+..+-.+.+.|+.++|.+++.-+.+.+    ..|.......++..-.+..+...|..+++-|...++ |..+ .-..
T Consensus       523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~-~~~E~La~R  601 (625)
T KOG4422|consen  523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL-PICEGLAQR  601 (625)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-hhhhHHHHH
Confidence            567777788899999999999999886543    223344455677777888999999999999987664 3333 4444


Q ss_pred             HHHHHHccCcccccchhhh
Q 038914          549 VVDLLVKNEISLNSIPQFK  567 (570)
Q Consensus       549 l~~~~~~~g~~~~a~~~~~  567 (570)
                      +.+.|.-+....+++.-+.
T Consensus       602 I~e~f~iNqeq~~~ls~l~  620 (625)
T KOG4422|consen  602 IMEDFAINQEQKEALSNLT  620 (625)
T ss_pred             HHHhcCcCHHHHHHHhhhh
Confidence            4444443333335554443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.1e-14  Score=124.93  Aligned_cols=462  Identities=10%  Similarity=0.094  Sum_probs=339.7

Q ss_pred             HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHH
Q 038914           60 CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAAL  139 (570)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~  139 (570)
                      +-|+..++.+.  -+...|...+.--..+++++.|..+|++++... ..+...+...+..=.+       ...+..|..+
T Consensus        60 kefEd~irrnR--~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emk-------nk~vNhARNv  129 (677)
T KOG1915|consen   60 KEFEDQIRRNR--LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMK-------NKQVNHARNV  129 (677)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHh-------hhhHhHHHHH
Confidence            44555555554  677788888888888999999999999999763 2333344444433333       3578889999


Q ss_pred             HHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          140 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKM  219 (570)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  219 (570)
                      +++.+..= +.-...|.-.+..--..|+...|.++|++-..        ..|+..+|.+.+..=.+.+.++.|..++++.
T Consensus       130 ~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerf  200 (677)
T KOG1915|consen  130 WDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERF  200 (677)
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99888752 22234566666666678999999999999988        5799999999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914          220 KDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-GV-QPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD  297 (570)
Q Consensus       220 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  297 (570)
                      .-.  .|++.+|......-.+.|....+..+|+..++. |. .-+...+.+....=..+..++.|.-+|+-.++. ++.+
T Consensus       201 V~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~  277 (677)
T KOG1915|consen  201 VLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKG  277 (677)
T ss_pred             hee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence            874  689999999999999999999999999988764 11 112334455555555677889999999998886 3333


Q ss_pred             --HhhHHHHHHHHHhcCCHHHHHHH--------HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          298 --TSTYNTLIDGYCLTGKIDRAREL--------FVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT  367 (570)
Q Consensus       298 --~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  367 (570)
                        ...|..+...--+-|+.......        ++.+.+.+ +.|-.+|-..++.-...|+.+...++|++++.. ++|-
T Consensus       278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~  355 (677)
T KOG1915|consen  278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPA  355 (677)
T ss_pred             cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCch
Confidence              34455555444455664433322        34445444 567888999999889999999999999999986 4442


Q ss_pred             hh--h---HHHHH--HHH---hhcCCHHHHHHHHHHHHhCCCCcCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcC
Q 038914          368 VV--T---YHTLF--LGL---FEVHQVEHALKLFDEMRRNHVAANTYIYTT----FIDGLCKNGYIVKAVELFRTLRILK  433 (570)
Q Consensus       368 ~~--~---~~~l~--~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~  433 (570)
                      ..  .   |..+-  -++   ....+.+.+.++++..++. ++-...++..    ......++.++..|.+++..++  |
T Consensus       356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G  432 (677)
T KOG1915|consen  356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--G  432 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--c
Confidence            21  1   11111  111   3578999999999998874 3444444443    3444557889999999999887  4


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHH
Q 038914          434 YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG-LEPNFVIFN  512 (570)
Q Consensus       434 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~  512 (570)
                      ..|-..+|-..+..-.+.++++.+..++++.+..+ +-|..+|...+..-...|+.+.|..+|.-+++.. +......|.
T Consensus       433 ~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk  511 (677)
T KOG1915|consen  433 KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK  511 (677)
T ss_pred             cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence            47888999999999999999999999999999964 4466888888888888999999999999998752 222345667


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914          513 TLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVD  551 (570)
Q Consensus       513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  551 (570)
                      ..+..-...|.++.|..+++++++..  +-..+|..+..
T Consensus       512 aYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~  548 (677)
T KOG1915|consen  512 AYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK  548 (677)
T ss_pred             HhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence            77777778999999999999999653  33335544433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.2e-14  Score=129.33  Aligned_cols=431  Identities=15%  Similarity=0.104  Sum_probs=267.1

Q ss_pred             HHHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914           38 LRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI  117 (570)
Q Consensus        38 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  117 (570)
                      ....+...|.-.+++|+|++|++.|++++...|  ..+.-|...+.+|...|+|++.++---++++.  .|+-.      
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p--~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~------  183 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP--DEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYV------  183 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC--CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHH------
Confidence            345577789999999999999999999999988  44677889999999999999999999999887  45432      


Q ss_pred             HHHHhcCCcchhhCCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhH
Q 038914          118 NCFLQNGSSLCVESRIMEAAALFTKLRVF-GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTY  196 (570)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (570)
                      .++.+....+-..|++++|+.-..-.--. |+. +..+--.+=+.+-     ..|..-..+-.+.+   +..+-|.....
T Consensus       184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~n---r~p~lPS~~fi  254 (606)
T KOG0547|consen  184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKEN---RPPVLPSATFI  254 (606)
T ss_pred             HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhccc---CCCCCCcHHHH
Confidence            22222223333446777776543322111 111 1111111111111     11222222222211   11134444443


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCCC---------h
Q 038914          197 TTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-ANDWNEAKHLFIEMMDQ---GVQPN---------V  263 (570)
Q Consensus       197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~---------~  263 (570)
                      .+....+...-.        ..+...+.+.|...-..+=..+.. ...+..|.+.+.+-...   ....+         .
T Consensus       255 ~syf~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A  326 (606)
T KOG0547|consen  255 ASYFGSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA  326 (606)
T ss_pred             HHHHhhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence            333333221100        000000000010000000000100 01223333333221110   00011         1


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914          264 VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGY  343 (570)
Q Consensus       264 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  343 (570)
                      .+.......+.-.|+.-.|..-|+..+..... +...|..+..+|....+.++....|+...+.+ +.++.+|..-.+++
T Consensus       327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHH
Confidence            22223333445578888999999999887433 33347777888899999999999999998886 44788888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038914          344 CKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAV  423 (570)
Q Consensus       344 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  423 (570)
                      .-.++++.|..-|++.+..... +...|..+.-+..+.++++++...|++..+. ++..+..|+.+...+...+++++|.
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence            8899999999999999886322 4566777777777889999999999998876 5777889999999999999999999


Q ss_pred             HHHHHHHHcCCC-----CChh--hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914          424 ELFRTLRILKYE-----LNIV--SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF  496 (570)
Q Consensus       424 ~~~~~~~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  496 (570)
                      +.|+..++....     .+..  +.-.++.. .-.+++..|..++.++.+.. +.....|..|...-...|+.++|+++|
T Consensus       483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielF  560 (606)
T KOG0547|consen  483 KQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELF  560 (606)
T ss_pred             HHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999998876311     1111  11222222 23488999999999998853 224567889999999999999999999


Q ss_pred             HHHHH
Q 038914          497 LDMEA  501 (570)
Q Consensus       497 ~~~~~  501 (570)
                      ++...
T Consensus       561 Eksa~  565 (606)
T KOG0547|consen  561 EKSAQ  565 (606)
T ss_pred             HHHHH
Confidence            88765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=5.3e-13  Score=118.36  Aligned_cols=380  Identities=11%  Similarity=0.031  Sum_probs=267.1

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA  228 (570)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  228 (570)
                      ..|...+-..+..+.+.|....|++.|.......       |-.-.+|..|...+.   +.+.+    ..... +.+.|.
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~  225 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELIT---DIEIL----SILVV-GLPSDM  225 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhhc---hHHHH----HHHHh-cCcccc
Confidence            4466666666677788899999999999988754       333444554444332   22222    22221 122222


Q ss_pred             HHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHH
Q 038914          229 VTYT--SLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV--KPDTSTYNTL  304 (570)
Q Consensus       229 ~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l  304 (570)
                      ....  -+..++....+.+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+.+.  --|..+|..+
T Consensus       226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~  305 (559)
T KOG1155|consen  226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV  305 (559)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence            2121  23455666678888888888888888776666666666777888999999999999988731  1144566665


Q ss_pred             HHHHHhcCCHHHHHHHHHH-HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC
Q 038914          305 IDGYCLTGKIDRARELFVS-MESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ  383 (570)
Q Consensus       305 ~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  383 (570)
                      +..-  ..+-.  +..+.+ +...+ +--+.|...+.+.|.-.++.++|+..|++.++.+.. ....++.+..-|...++
T Consensus       306 LYv~--~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKN  379 (559)
T KOG1155|consen  306 LYVK--NDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKN  379 (559)
T ss_pred             HHHH--hhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcc
Confidence            5432  22211  122211 11111 234566777888888899999999999999987433 45678888888999999


Q ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 038914          384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSS  463 (570)
Q Consensus       384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  463 (570)
                      ...|+..++...+-+ +.|...|..+.++|.-.+...-|+-+|+++.... |.|...|.+|+.+|.+.++.++|.+.|..
T Consensus       380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999998875 6788899999999999999999999999998876 77899999999999999999999999999


Q ss_pred             hhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          464 LPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       464 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ....| ..+...+..|+..|-+.++.++|...|++.++.    |...+  ..+..-|..-+.+.+++++|..+.......
T Consensus       458 ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  458 AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            98865 335578899999999999999999999887662    32222  223333556677899999998887777643


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 038914          538 NVMPDASTLSIVVDLLV  554 (570)
Q Consensus       538 ~~~p~~~~~~~l~~~~~  554 (570)
                        .+..+--..++.-+.
T Consensus       537 --~~e~eeak~LlReir  551 (559)
T KOG1155|consen  537 --ETECEEAKALLREIR  551 (559)
T ss_pred             --CchHHHHHHHHHHHH
Confidence              455555555554443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.75  E-value=8.2e-14  Score=133.52  Aligned_cols=365  Identities=15%  Similarity=0.124  Sum_probs=217.1

Q ss_pred             cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh
Q 038914          126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK  205 (570)
Q Consensus       126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  205 (570)
                      .+...|++++|..++.++++.. +.+...|..|..+|-+.|+.+++...+-.+...+       +.|...|..+.....+
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHh
Confidence            3445577777777777777664 3456667777777777777777777766666554       4556777777777777


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCChhH
Q 038914          206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF----TVIMDELCKNGKMDG  281 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~  281 (570)
                      .|++++|.-.|.+.++.. +++...+-.-+..|-+.|+...|...|.++.....+.+..-+    ...++.+...++-+.
T Consensus       220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            777777777777777763 335555555566677777777777777777765332222222    223455566666677


Q ss_pred             HHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCH
Q 038914          282 ASRLLELMILR-GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM---------------------------HDV  333 (570)
Q Consensus       282 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~  333 (570)
                      |.+.++..... +-..+...++.++..+.+...++.+.............                           ++.
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence            77777766652 12234455667777777777777777666665541111                           111


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914          334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIR--PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID  411 (570)
Q Consensus       334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  411 (570)
                      .+ ..+.-++...+..+....+...+....+.  -+...|..+..++...|++..|+.++..+.......+..+|..+..
T Consensus       379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~  457 (895)
T KOG2076|consen  379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR  457 (895)
T ss_pred             hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence            11 11222333344444444444444444322  2344566666777777777777777777766544445566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh--------CCCCCChhhHHHHHHHH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR--------VGLMADVVTYNIMIHGL  483 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~  483 (570)
                      +|...|.++.|.+.++.+.... |.+..+-..|...+.+.|+.++|.+.+..+..        ....|+..........+
T Consensus       458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l  536 (895)
T KOG2076|consen  458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL  536 (895)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence            7777777777777777766654 44455555666666777777777777766542        11223333333444455


Q ss_pred             HhcCChhHHHHHHHHHHH
Q 038914          484 CNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       484 ~~~g~~~~A~~~~~~~~~  501 (570)
                      ...|+.++=+.....|+.
T Consensus       537 ~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  537 FQVGKREEFINTASTLVD  554 (895)
T ss_pred             HHhhhHHHHHHHHHHHHH
Confidence            566666665554444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2e-14  Score=127.95  Aligned_cols=392  Identities=15%  Similarity=0.079  Sum_probs=207.0

Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhH
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTY  196 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~  196 (570)
                      .+-..|.-+.+.|.+++|++.|.+.++.  .|+ +..|.....+|...|++++..+...+.++.+        |+ +..+
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--------P~Y~KAl  186 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--------PDYVKAL  186 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--------cHHHHHH
Confidence            3344556677788999999999999987  566 7778889999999999999999999998854        55 5677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHH
Q 038914          197 TTIIDGLCKKGFVDKAKELFLKM-KDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG---VQPNVVTFTVIMDE  272 (570)
Q Consensus       197 ~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~  272 (570)
                      ..-..++-..|++++|+.-..-. +..|+. |..+--.+=+.+-+     .+..-.++-.+.+   +-|+.....+....
T Consensus       187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~s  260 (606)
T KOG0547|consen  187 LRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGS  260 (606)
T ss_pred             HHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence            77788888888888876433221 111221 11111111111111     1111111111111   12222222222211


Q ss_pred             HHh-------------------------cC---ChhHHHHHHHHHHHC-CCCC--C---------HhhHHHHHHHHHhcC
Q 038914          273 LCK-------------------------NG---KMDGASRLLELMILR-GVKP--D---------TSTYNTLIDGYCLTG  312 (570)
Q Consensus       273 ~~~-------------------------~g---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~l~~~~~~~~  312 (570)
                      +..                         .+   .+..|...+.+-... ...+  +         ..+.......+.-.|
T Consensus       261 F~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g  340 (606)
T KOG0547|consen  261 FHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG  340 (606)
T ss_pred             ccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence            110                         00   112222222111110 0000  1         111111112233455


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 038914          313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFD  392 (570)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  392 (570)
                      +.-.|..-|+.++..... +...|-.+..+|...++.++..+.|.+..+.+.. ++.+|..-.+...-.+++++|..-|+
T Consensus       341 ~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~  418 (606)
T KOG0547|consen  341 DSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQ  418 (606)
T ss_pred             CchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence            666666666666655322 2222555555666666666666666666655332 45556666666666666666666666


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 038914          393 EMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD  472 (570)
Q Consensus       393 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  472 (570)
                      ...... +.+...+..+.-+..+.+.++++...|+..++. +|..+..|+.....+...++++.|.+.|+..++.  .|+
T Consensus       419 Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~  494 (606)
T KOG0547|consen  419 KAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPR  494 (606)
T ss_pred             HHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccc
Confidence            665543 233444444444445566666666666666543 2455566666666666666666666666666552  232


Q ss_pred             -------hhhH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          473 -------VVTY--NIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       473 -------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                             ...+  -.++ .+...+++..|..+++++.+.  .| ....|..|.....+.|+.++|+++|++..
T Consensus       495 ~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  495 EHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             cccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                   1111  1111 111236666666666666663  33 34456666666666666666666666655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3.1e-13  Score=119.76  Aligned_cols=358  Identities=10%  Similarity=0.002  Sum_probs=263.2

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH--H
Q 038914          190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF--T  267 (570)
Q Consensus       190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~  267 (570)
                      ..|...+-.....+.+.|....|++.|...... .+-.-.+|..|....   .+.    ++....... ...+...+  -
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~----e~~~~l~~~-l~~~~h~M~~~  231 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDI----EILSILVVG-LPSDMHWMKKF  231 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chH----HHHHHHHhc-CcccchHHHHH
Confidence            345566666667788899999999999988875 233444444444332   222    223333322 22222222  2


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHh
Q 038914          268 VIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM--HDVVSYSILINGYCK  345 (570)
Q Consensus       268 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~  345 (570)
                      .+..++....+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+.++-  .|..+|..++-  .+
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~  309 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence            345567777788999999999998888777777777777788899999999999999987421  15667776663  33


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL  425 (570)
Q Consensus       346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  425 (570)
                      ..+..  +..+-.-...--+-.+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|++.
T Consensus       310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence            33222  1122111111012245677788888999999999999999999875 45667888899999999999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914          426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE  505 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  505 (570)
                      ++++++.+ |-|-..|-.|+++|.-.+...-|+-.|+++.... +.|...|.+|+.+|.+.++.++|++.|.++...|- 
T Consensus       387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-  463 (559)
T KOG1155|consen  387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-  463 (559)
T ss_pred             HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence            99999987 7899999999999999999999999999999852 44678999999999999999999999999998753 


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHccCcccccch
Q 038914          506 PNFVIFNTLMLGFIRNNETSKVIELLHRMDM----RNVMPD--ASTLSIVVDLLVKNEISLNSIP  564 (570)
Q Consensus       506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~  564 (570)
                      .+...+..+...|-+.++.++|...+++-++    .|...+  ......+..-+.+.+++++|-.
T Consensus       464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY  528 (559)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3668899999999999999999999998874    233222  3333445556777888887754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1e-14  Score=123.02  Aligned_cols=298  Identities=17%  Similarity=0.163  Sum_probs=224.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS  125 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  125 (570)
                      |...+-..+++.|...|-.+++.+|  .+.++..+|+..+.+.|+.+.|+.+.+.+.+.   ||. |+..-+.+...+|.
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl~qL~~  115 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLALQQLGR  115 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHHHHHHH
Confidence            3334456789999999999999888  78889999999999999999999999999874   443 45555556667778


Q ss_pred             cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC----hhhHHHHHH
Q 038914          126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD----TVTYTTIID  201 (570)
Q Consensus       126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~  201 (570)
                      .|...|-+|.|..+|..+.+.+ .--..+...|+..|-+..++++|+++-+++.+.++      .+.    ...|.-|..
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~------q~~~~eIAqfyCELAq  188 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG------QTYRVEIAQFYCELAQ  188 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC------ccchhHHHHHHHHHHH
Confidence            8888999999999999998753 22345778899999999999999999999988762      121    345777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                      .+....+.++|..++.+....+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            888888999999999998887433 5555666778889999999999999999988666556777888899999999999


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHH
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKT---KDVEEGLNLYRK  358 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~  358 (570)
                      ....+..+.+...  ....-..+...-....-.+.|...+.+-+..  .|+...+..++......   |...+.+.++++
T Consensus       268 ~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~  343 (389)
T COG2956         268 GLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRD  343 (389)
T ss_pred             HHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence            9999998887633  3333344444444444456666655554444  47888888887765432   334555566666


Q ss_pred             HHh
Q 038914          359 MLS  361 (570)
Q Consensus       359 ~~~  361 (570)
                      |+.
T Consensus       344 mvg  346 (389)
T COG2956         344 MVG  346 (389)
T ss_pred             HHH
Confidence            654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=1.6e-13  Score=129.81  Aligned_cols=284  Identities=11%  Similarity=0.027  Sum_probs=201.7

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCHHH
Q 038914          240 YANDWNEAKHLFIEMMDQGVQPNVVT-FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYN--TLIDGYCLTGKIDR  316 (570)
Q Consensus       240 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~  316 (570)
                      ..|+++.|.+.+....+...  ++.. |.....+....|+++.|...+.++.+.  .|+.....  .....+...|+++.
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence            36888888877766554321  2222 333344457788888888888888765  44433222  33567778888888


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHhhcCCHHHHHH
Q 038914          317 ARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV-------VTYHTLFLGLFEVHQVEHALK  389 (570)
Q Consensus       317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~  389 (570)
                      |...++.+.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++.       .++..++.......+.+...+
T Consensus       172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            888888887775 446777788888888888888888888888876544222       122333333334455566666


Q ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914          390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL  469 (570)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  469 (570)
                      +++.+.+. .+.++.....+...+...|+.++|..++++..+.  +++....  ++.+....++.+++.+..+...+.. 
T Consensus       251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-  324 (398)
T PRK10747        251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-  324 (398)
T ss_pred             HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence            66665443 2457778888888999999999999999888774  4555332  2334445688999999998888752 


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      +.|...+..+++.|...|++++|.+.|+.+.+  ..|+...+..+..++.+.|+.++|..++++...
T Consensus       325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44556788889999999999999999999988  578988888899999999999999999988763

>TIGR00540 hemY_coli hemY protein

Probab=99.71  E-value=1.1e-13  Score=131.83  Aligned_cols=291  Identities=11%  Similarity=0.003  Sum_probs=189.3

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038914          239 CYANDWNEAKHLFIEMMDQGVQPNV-VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRA  317 (570)
Q Consensus       239 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  317 (570)
                      ...|+++.|.+.+.+..+..  |+. ..+.....++...|+++.|.+++.++.+....+...........+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            35677888887777766542  332 333444566677788888888887776542222222333446677778888888


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHH---HHhhcCCHHHHHHHHHH
Q 038914          318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH-TLFL---GLFEVHQVEHALKLFDE  393 (570)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~  393 (570)
                      ...++.+.+.. |.+..+...+...+...|+++.|.+.+..+.+.+.. +...+. ....   .....+..+.....+..
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            88888877765 446667777778888888888888888888776543 222221 1111   11222222333334444


Q ss_pred             HHhCCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914          394 MRRNHV---AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVS--YNCLIDGLCKHGRLEIAWELFSSLPRVG  468 (570)
Q Consensus       394 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~  468 (570)
                      +.+...   +.+...+..++..+...|+.++|.+.+++..+.. +.+...  ...........++.+.+.+.++...+..
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            443321   2367788888888889999999999999888764 222211  1111122234577888888888877642


Q ss_pred             CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          469 LMADV--VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       469 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                       +.|.  ....++++.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus       330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             3344  55678899999999999999999954443357888888889999999999999999998865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.70  E-value=1.8e-13  Score=130.36  Aligned_cols=289  Identities=13%  Similarity=0.115  Sum_probs=154.0

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038914          163 CRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYA  241 (570)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  241 (570)
                      ...|+++.|.+.+.+..+..        |+ ...+.....++...|+.+.|.+.+.+..+....+...........+...
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~  166 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ  166 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence            45688888888887776643        33 3344555667777788888888888776542222223334456777778


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHH---HhcCCHHHH
Q 038914          242 NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYN-TLIDGY---CLTGKIDRA  317 (570)
Q Consensus       242 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a  317 (570)
                      |+++.|...++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ...+..+++
T Consensus       167 ~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       167 NELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888888888888776432 5566777777888888888888888888777533 222221 111111   222222222


Q ss_pred             HHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHH--HHhhcCCHHHHHHHH
Q 038914          318 RELFVSMESNGC---MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYH-TLFL--GLFEVHQVEHALKLF  391 (570)
Q Consensus       318 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~a~~~~  391 (570)
                      ...+..+.....   +.+...+..+...+...|+.++|.+++++..+..  |+..... .++.  .....++.+.+.+.+
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence            223333333211   1255566666666666777777777776666642  2222100 0111  112234444444444


Q ss_pred             HHHHhCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 038914          392 DEMRRNHVAANT--YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSL  464 (570)
Q Consensus       392 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  464 (570)
                      +...+.. +.+.  .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus       323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4444432 2233  3444445555555555555555553222222344444445555555555555555555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.9e-12  Score=115.88  Aligned_cols=459  Identities=11%  Similarity=0.019  Sum_probs=304.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 038914           78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNT  157 (570)
Q Consensus        78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  157 (570)
                      +..+.+-+..+.++..|.-+-++....+..|+..-  .+..++.-       .|+++.|..+...-.-.  ..|..+...
T Consensus        19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~-------~~~y~ra~~lit~~~le--~~d~~cryL   87 (611)
T KOG1173|consen   19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYL-------GRQYERAAHLITTYKLE--KRDIACRYL   87 (611)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHh-------hhHHHHHHHHHHHhhhh--hhhHHHHHH
Confidence            44444445556667777777777766654443322  22222222       24666666666544322  335566666


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCC------C-CcccCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          158 LINGLCRTGHTIVALNLFEEMANGNGE------I-GVVCKPD-----------TVTYTTIIDGLCKKGFVDKAKELFLKM  219 (570)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~~~~~~~~------~-~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~  219 (570)
                      ...++.+..++++|..++.........      . +..+.+|           ...+-.-...|....+.++|...|.+.
T Consensus        88 ~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~A  167 (611)
T KOG1173|consen   88 AAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEA  167 (611)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHH
Confidence            677777777777777777622110000      0 0001111           111222234556667788888888877


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhc-----------------CCHHH-HHHHHHHHHHC----------------CCCCChhh
Q 038914          220 KDENINPNAVTYTSLICGFCYA-----------------NDWNE-AKHLFIEMMDQ----------------GVQPNVVT  265 (570)
Q Consensus       220 ~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~-a~~~~~~~~~~----------------~~~~~~~~  265 (570)
                      ...++. ....+..++....-.                 +...+ -..+|+-....                +..-+...
T Consensus       168 l~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl  246 (611)
T KOG1173|consen  168 LLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL  246 (611)
T ss_pred             Hhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence            665222 222222222221111                 11111 11122211000                11223344


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914          266 FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK  345 (570)
Q Consensus       266 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  345 (570)
                      ......-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- |....+|-.+.-.|..
T Consensus       247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~  324 (611)
T KOG1173|consen  247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM  324 (611)
T ss_pred             HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence            4455566778899999999999999874 5566666666778889999887777777777653 5578889999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL  425 (570)
Q Consensus       346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  425 (570)
                      .|...+|.+.|.+....+.. -...|.....+++-.+..++|...+....+. ++....-+..+..-|.+.++.+.|.++
T Consensus       325 i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F  402 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF  402 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence            99999999999998775222 2457888899999999999999999887664 222333344455668889999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV------GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM  499 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  499 (570)
                      |.++.... |.|+.+.+-+.-.....+.+.+|...|+..+..      ....-..+++.|+.+|.+.+.+++|+..+++.
T Consensus       403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            99998765 678888888888888899999999999987631      00113456899999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038914          500 EAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKN  556 (570)
Q Consensus       500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  556 (570)
                      +.. .+.+..++.++.-.|...|+++.|+..|.+.+  .+.|+..+...++..+...
T Consensus       482 L~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  482 LLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence            986 35588899999999999999999999999998  5689887777666654443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=2.1e-16  Score=142.93  Aligned_cols=261  Identities=15%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914          268 VIMDELCKNGKMDGASRLLELMILRG-VKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKT  346 (570)
Q Consensus       268 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  346 (570)
                      .+...+...|++++|+++++...... .+.+...+..+...+...++++.|...++++...+. .+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence            34566666777777777775544332 123444455555566666777777777777666542 244455555555 566


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          347 KDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCKNGYIVKAVEL  425 (570)
Q Consensus       347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~  425 (570)
                      +++++|.+++....+.  .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777776665543  2344555566666667777777777776655422 234556666666777777777777777


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914          426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE  505 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  505 (570)
                      ++++.+.. |.|......++..+...|+.+++..++....+.. +.|...+..++.++...|+.++|+.+|++..+. .+
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p  245 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP  245 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence            77777664 4456666677777777777777777666665542 345556666777777777777777777776663 13


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          506 PNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      .|+.....+..++...|+.++|..+..++.
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             T-HHHHHHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            355666667777777777777777766654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.69  E-value=4.2e-13  Score=127.04  Aligned_cols=251  Identities=14%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038914          163 CRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTY--TTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY  240 (570)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  240 (570)
                      .+.|+++.|...++++.+..        |+....  ......+...|++++|.+.++++.+.+ +-+...+..+...|..
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~  199 (398)
T PRK10747        129 QQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            44555555555555555432        332211  122445555555555555555555543 2244455555555555


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914          241 ANDWNEAKHLFIEMMDQGVQPNV-------VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK  313 (570)
Q Consensus       241 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  313 (570)
                      .|+|++|.+++..+.+.+..++.       .+|..++.......+.+...++++.+.+. .+.+......+...+...|+
T Consensus       200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~  278 (398)
T PRK10747        200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD  278 (398)
T ss_pred             HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence            55555555555555554322111       12222222222333334444444443222 12344455555555555566


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 038914          314 IDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDE  393 (570)
Q Consensus       314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  393 (570)
                      .++|..++++..+.  +++....  ++.+....++.+++++..+...+.. +-|......+...+...+++++|.+.|+.
T Consensus       279 ~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        279 HDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             HHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66666555555543  2232111  1222233355555555555555542 12334455555555556666666666655


Q ss_pred             HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          394 MRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR  430 (570)
Q Consensus       394 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  430 (570)
                      +.+.  .|+...+..+..++.+.|+.++|.+++++..
T Consensus       354 al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        354 ALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5543  3555555555555566666666666555543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.69  E-value=2.9e-16  Score=142.03  Aligned_cols=262  Identities=18%  Similarity=0.172  Sum_probs=89.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKDEN-INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN  276 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (570)
                      .+...+.+.|++++|++++++..... .+.+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            55677777788888888886544432 2335555566666667777788888888777765433 45556566655 577


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038914          277 GKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNG-CMHDVVSYSILINGYCKTKDVEEGLNL  355 (570)
Q Consensus       277 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~  355 (570)
                      +++++|.+++....+.  .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777777766554  2345556666777777777777777777765432 234566677777777777777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038914          356 YRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE  435 (570)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  435 (570)
                      +++.++..+. +......++..+...|+.+++..+++...+.. +.+...+..+..++...|+.++|..++++..+.. +
T Consensus       169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p  245 (280)
T PF13429_consen  169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P  245 (280)
T ss_dssp             HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence            7777775221 45556666777777777777777766665543 4455566667777777777777777777776654 5


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          436 LNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .|+.....++.++...|+.++|.++..++.+
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5666777777777777777777777666543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=5.9e-14  Score=130.25  Aligned_cols=285  Identities=13%  Similarity=0.040  Sum_probs=164.1

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCcchhhC
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      +..+|+..|.......+  ........++.+|...+++++|..+|+.+.+..+.  -+..+|..++.-+           
T Consensus       334 ~~~~A~~~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-----------  400 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-----------  400 (638)
T ss_pred             HHHHHHHHHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-----------
Confidence            45667777766444333  33344456666777777777777777777665211  1334444444332           


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914          132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK  211 (570)
Q Consensus       132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  211 (570)
                      +-+-++..+.+-+-.-.+..+.+|-.++.+|.-+++.+.|+..|+++.+.+       +....+|+.+..-+.....+|.
T Consensus       401 q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~  473 (638)
T KOG1126|consen  401 QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDK  473 (638)
T ss_pred             HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHh
Confidence            112233333332222123345667777777777777777777777776654       2246666666666666666777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          212 AKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMIL  291 (570)
Q Consensus       212 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  291 (570)
                      |...|+..+..+.. +..+|..+.-.|.+.++++.|+-.|+++.+.++. +......++..+.+.|+.++|+++++++..
T Consensus       474 a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  474 AMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             HHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            77777666554211 3334445556666677777777666666665332 445555566666666667777777766665


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          292 RGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK  362 (570)
Q Consensus       292 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  362 (570)
                      .+. .|+..-...+..+...+++++|+..++++.+.- +.+..++..++..|.+.|+.+.|+.-|.-+.+.
T Consensus       552 ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  552 LDP-KNPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             cCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            532 233333344555556666666666666666552 334555666666666666666666666665554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.1e-11  Score=106.28  Aligned_cols=454  Identities=12%  Similarity=0.160  Sum_probs=230.5

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCC
Q 038914           53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR  132 (570)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  132 (570)
                      .++..|+.+++-....+. ......-..++.++.+.|++++|+..|..+.... .++......+..++..+       |.
T Consensus        36 rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL-------g~  106 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL-------GQ  106 (557)
T ss_pred             ccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH-------HH
Confidence            367777777776654443 1222334456667777777777777777776643 33333333322222222       46


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914          133 IMEAAALFTKLRVFGCEPDVFTYN-TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK  211 (570)
Q Consensus       133 ~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  211 (570)
                      +.+|..+-++..      +....+ .++....+.++-++-...-+.+..           ....-.+|.......-.+.+
T Consensus       107 Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----------~~EdqLSLAsvhYmR~HYQe  169 (557)
T KOG3785|consen  107 YIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----------TLEDQLSLASVHYMRMHYQE  169 (557)
T ss_pred             HHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----------hHHHHHhHHHHHHHHHHHHH
Confidence            666666555432      222322 333334445554444443333321           12333334444434444566


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--C-----------
Q 038914          212 AKELFLKMKDENINPNAVTYTS-LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN--G-----------  277 (570)
Q Consensus       212 a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-----------  277 (570)
                      |++++.++...  .|+....+. +.-+|.+..-++-+.++++-..+. ++-+..+.+..+....+.  |           
T Consensus       170 AIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~la  246 (557)
T KOG3785|consen  170 AIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELA  246 (557)
T ss_pred             HHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence            66666666553  223333332 223444555555555555555443 111222222222111111  1           


Q ss_pred             ----------------------ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 038914          278 ----------------------KMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVS  335 (570)
Q Consensus       278 ----------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  335 (570)
                                            .-+.|++++--+.+.  -|  .....++-.|.+.+++.+|..+.+++.-.    ++.-
T Consensus       247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~E  318 (557)
T KOG3785|consen  247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYE  318 (557)
T ss_pred             hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHH
Confidence                                  123334433333322  11  22233445567788888888777665422    2322


Q ss_pred             HHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 038914          336 YSILINGYCKTK-------DVEEGLNLYRKMLSKGIRPTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYT  407 (570)
Q Consensus       336 ~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  407 (570)
                      |-.-.-.+...|       ...-|.+.|+..-+.+..-|. ..-..+...+.-..++++++..+..+...-. .|.....
T Consensus       319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~  397 (557)
T KOG3785|consen  319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNL  397 (557)
T ss_pred             HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccchhhh
Confidence            222222233333       344555555544444332222 2234455555666778888888777766533 3333344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh-HHHHHHHHHhc
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT-YNIMIHGLCND  486 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~  486 (570)
                      .+.++++..|++.+|+++|-++....++.+..-...|.++|.+.+.++.|+.++-++..   +.+..+ ...+..-|.+.
T Consensus       398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~  474 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKA  474 (557)
T ss_pred             HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHH
Confidence            56778888888888888887776544433344445667788888888888877665543   223333 33445567778


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCc
Q 038914          487 GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMP-DASTLSIVVDLLVKNEI  558 (570)
Q Consensus       487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  558 (570)
                      +.+=-|.+.|..+..  ..|++..|.         |+-.....++..+....-.| ....++.++..+...+.
T Consensus       475 ~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n  536 (557)
T KOG3785|consen  475 NEFYYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN  536 (557)
T ss_pred             HHHHHHHHhhhHHHc--cCCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence            888778888877776  457766664         22222334444444322222 23455555555555444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.67  E-value=1.7e-12  Score=113.32  Aligned_cols=287  Identities=13%  Similarity=0.103  Sum_probs=194.8

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038914          240 YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARE  319 (570)
Q Consensus       240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  319 (570)
                      ..|+|..|++...+-.+.+..| ...|..-+++.-..|+.+.+-.++.++-+....++....-+..+.....|+++.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            3577777777777766655443 344555566666777777777777777665334445555566666777777777777


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHhhcCCHHHHHHHHH
Q 038914          320 LFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV-------VTYHTLFLGLFEVHQVEHALKLFD  392 (570)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~  392 (570)
                      -++++...+ +.++.......++|.+.|++.....++.++.+.+.-.+.       .++..+++-....+..+.-...++
T Consensus       175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            777777665 346666777777777777777777777777776654443       344555555555555555555666


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 038914          393 EMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD  472 (570)
Q Consensus       393 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  472 (570)
                      ..... ...++.....++.-+.++|+.++|.++..+..+.+..+.   . ...-.+.+-++.+.-++..++-.+. .+.+
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~  327 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-HPED  327 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence            65443 244566667777778888888888888888877765544   1 1222455667777777766666554 2345


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      +..+.+|+..|.+.+.|.+|.+.|+...+  ..|+..+|..+..++.+.|+..+|....++...
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            57778888888888888888888887777  578888888888888888888888888877663

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.66  E-value=1.5e-12  Score=110.22  Aligned_cols=288  Identities=16%  Similarity=0.172  Sum_probs=183.9

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHH
Q 038914          241 ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD---TSTYNTLIDGYCLTGKIDRA  317 (570)
Q Consensus       241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a  317 (570)
                      ..+.++|.+.|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+++.+.+.++.--+.   ......|.+-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            445566666666666532 22334444566666666666666666666655311110   12334455666677777777


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhhcCCHHHHHHHHHH
Q 038914          318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV----VTYHTLFLGLFEVHQVEHALKLFDE  393 (570)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~  393 (570)
                      +.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+..    ..|..+...+....+.+.|..++..
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            77777776643 223455667777788888888888887777776544332    3455566666667788888888887


Q ss_pred             HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh
Q 038914          394 MRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV  473 (570)
Q Consensus       394 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  473 (570)
                      ..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+.  .+..
T Consensus       206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~  282 (389)
T COG2956         206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA  282 (389)
T ss_pred             HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence            77654 33445555667777888888888888888887754444566778888888888888888888888774  3444


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR---NNETSKVIELLHRMD  535 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~  535 (570)
                      ..-..+...-....-.+.|..++.+-+..  +|+...+..++.....   .|...+-+..+++|.
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence            44445555444444455666655554442  6888888888776553   344666777777776

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=7.7e-14  Score=129.50  Aligned_cols=282  Identities=15%  Similarity=0.095  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914          209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV--QPNVVTFTVIMDELCKNGKMDGASRLL  286 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~  286 (570)
                      ..+|...|+.+... +.-+..+...+..+|...+++++|.++|+.+.+...  .-+...|.+.+-.+-   +.-+--.+-
T Consensus       335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~La  410 (638)
T KOG1126|consen  335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYLA  410 (638)
T ss_pred             HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHHH
Confidence            34555555553332 222234444455555555555555555555544311  112333433332221   111111122


Q ss_pred             HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038914          287 ELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP  366 (570)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  366 (570)
                      +.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|+|...|+..+..... 
T Consensus       411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-  487 (638)
T KOG1126|consen  411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-  487 (638)
T ss_pred             HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence            2222221 2234455555555555555555555555555442 113444555555555555555555555554432111 


Q ss_pred             ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038914          367 TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID  446 (570)
Q Consensus       367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  446 (570)
                      +-.+|..+...|.+.++++.|+-.|+.+.+-+ +.+......+...+.+.|+.++|+.+++++...+ +.|+..--..+.
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~  565 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRAS  565 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHH
Confidence            12233334444555555555555555554433 2333444444444555555555555555554443 223322223333


Q ss_pred             HHHhcCCHHHHHHHHHhhhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          447 GLCKHGRLEIAWELFSSLPRVGLMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       447 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .+...+++++|+..++++.+.  .| +...|..++..|.+.|+.+.|+.-|--+.+
T Consensus       566 il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            444455555555555555442  22 224444555555555555555555544444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.65  E-value=1.4e-10  Score=107.43  Aligned_cols=162  Identities=12%  Similarity=0.133  Sum_probs=113.2

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914           42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL  121 (570)
Q Consensus        42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  121 (570)
                      +...+..+.++|+...-+..|+.++..-|...+...|...+......|-++-++.+|++.++.  .|..  ....+..+.
T Consensus       105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~L~  180 (835)
T KOG2047|consen  105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEYLA  180 (835)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHHHH
Confidence            334445567899999999999999998887788889999999999999999999999999987  4433  444555554


Q ss_pred             hcCCcchhhCCHHHHHHHHHHHHhcC------CCCCcchHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCcccCCC
Q 038914          122 QNGSSLCVESRIMEAAALFTKLRVFG------CEPDVFTYNTLINGLCRTGHT---IVALNLFEEMANGNGEIGVVCKPD  192 (570)
Q Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~  192 (570)
                      ..       ++.++|.+.+..++...      -+.+-..|..+-....+.-+.   -....+++.+..+.        +|
T Consensus       181 ~~-------d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--------tD  245 (835)
T KOG2047|consen  181 KS-------DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--------TD  245 (835)
T ss_pred             hc-------cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--------cH
Confidence            44       59999999998877431      122334555555555544332   22334455544432        33


Q ss_pred             --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          193 --TVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       193 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                        ...|.+|.+.|.+.|.+++|.++|++....
T Consensus       246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~  277 (835)
T KOG2047|consen  246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT  277 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence              446788888888888888888888876653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=6.6e-12  Score=114.44  Aligned_cols=430  Identities=13%  Similarity=0.078  Sum_probs=283.3

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHH----HhCC---------CCCCHhh----HHHHHHHHHhcCCcchhhCCHHH
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRL----NSTG---------LFPDLYA----YNILINCFLQNGSSLCVESRIME  135 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---------~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~  135 (570)
                      .+..+.+..+.++.+..+|++|..++...    ....         +.++...    ...-...|.-.|+.|....++++
T Consensus        80 ~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~  159 (611)
T KOG1173|consen   80 RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREE  159 (611)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHH
Confidence            66777888889999999999999988832    1110         0111111    11222334444567777778888


Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038914          136 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKEL  215 (570)
Q Consensus       136 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  215 (570)
                      |...|.+.+..... ....+..++....     -.+.+.++.+...+-.  .....+......+.....-...-+.....
T Consensus       160 ar~~Y~~Al~~D~~-c~Ea~~~lvs~~m-----lt~~Ee~~ll~~l~~a--~~~~ed~e~l~~lyel~~~k~~n~~~~~r  231 (611)
T KOG1173|consen  160 ARDKYKEALLADAK-CFEAFEKLVSAHM-----LTAQEEFELLESLDLA--MLTKEDVERLEILYELKLCKNRNEESLTR  231 (611)
T ss_pred             HHHHHHHHHhcchh-hHHHHHHHHHHHh-----cchhHHHHHHhcccHH--hhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence            88888877654211 1222333332221     1222223333221100  00111222222222221111100111111


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914          216 FLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK  295 (570)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  295 (570)
                      -.+..-.+..-+......-.+-+...+++.+...+.+.+.+. .++....+..-+.++...|+..+-..+=.++++. .+
T Consensus       232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP  309 (611)
T KOG1173|consen  232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP  309 (611)
T ss_pred             CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence            110111123346666677777888889999999999998886 4556667777777888899988888888888876 34


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914          296 PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF  375 (570)
Q Consensus       296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  375 (570)
                      ....+|..+.-.|...|+..+|.+.|.+....+ +.-...|-.+...|.-.+..+.|+..+..+.+. ++.....+.-+.
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg  387 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG  387 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence            466788888888888899999999999887664 223457888889999999999999998887764 222333344556


Q ss_pred             HHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCChhhHHHHHHHHH
Q 038914          376 LGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL----K--YELNIVSYNCLIDGLC  449 (570)
Q Consensus       376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~  449 (570)
                      .-|...++.+.|.+.|.+..... |.|+.+++.+.-.....+.+.+|..+|+.....    .  ......+++.|+.+|.
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R  466 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR  466 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence            66888899999999998887653 667778888877777888999999999876521    1  0123456888999999


Q ss_pred             hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914          450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF  518 (570)
Q Consensus       450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  518 (570)
                      +.+.+++|+..+++.+... +.+..++.+++-+|...|+++.|.+.|.+.+.  +.|+..+...++..+
T Consensus       467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA  532 (611)
T ss_pred             HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence            9999999999999988763 56788999999999999999999999999887  678876666555433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.64  E-value=4.2e-12  Score=110.98  Aligned_cols=293  Identities=11%  Similarity=0.066  Sum_probs=237.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914          205 KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR  284 (570)
Q Consensus       205 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  284 (570)
                      -.|++.+|+++..+-.+.+.. ....|..-+.+.-..|+.+.+-+++.++.+....++........+.....|+.+.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            369999999999998877544 4456666678888999999999999999887556667777888889999999999999


Q ss_pred             HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          285 LLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV-------VSYSILINGYCKTKDVEEGLNLYR  357 (570)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~  357 (570)
                      -+.++.+.+ +-+..+.....++|.+.|++.....++..+.+.+.-.+.       .+|+.+++-....+..+.-...|+
T Consensus       175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            999999875 446778889999999999999999999999998866554       356666766666666666666776


Q ss_pred             HHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038914          358 KMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN  437 (570)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  437 (570)
                      ..... .+.++.....++.-+...|+.++|.++.++..+.+..+.   +..++ .+.+-++.+.-++..+...+.. +.+
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~~  327 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PED  327 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CCC
Confidence            66554 444677778888899999999999999999998876655   22222 3556788888888888776654 567


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914          438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN  507 (570)
Q Consensus       438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  507 (570)
                      +..+..|...|.+.+.|.+|...|+...+  ..|+..+|+.+..++.+.|+..+|.++.++.+..-.+|+
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            78899999999999999999999998888  479999999999999999999999999998775433443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.63  E-value=3.5e-10  Score=104.88  Aligned_cols=459  Identities=10%  Similarity=0.066  Sum_probs=285.2

Q ss_pred             CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914           74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV  152 (570)
Q Consensus        74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  152 (570)
                      -+..|...+..+..+|+....+..|++++..- +......|...+......+       -.+-++.+|++.++.    ++
T Consensus       101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-------lPets~rvyrRYLk~----~P  169 (835)
T KOG2047|consen  101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-------LPETSIRVYRRYLKV----AP  169 (835)
T ss_pred             CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-------ChHHHHHHHHHHHhc----CH
Confidence            34678888999999999999999999998762 2224456777777666654       778999999999875    44


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHH
Q 038914          153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV---DKAKELFLKMKDENINPNAV  229 (570)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~  229 (570)
                      ..-...|..+++.++.++|.+.+...+..+...+...+.+...|..+.+...+.-+.   -....+++.+...-..--..
T Consensus       170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~  249 (835)
T KOG2047|consen  170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGF  249 (835)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHH
Confidence            457788899999999999999999998766444443466677788877777765432   33445555555441111245


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------------------hhHHHHHHH
Q 038914          230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGK----------------------MDGASRLLE  287 (570)
Q Consensus       230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~  287 (570)
                      .|++|.+.|.+.|.+++|.++|++.+..  ..+..-|..+..+|+.-..                      ++-...-|+
T Consensus       250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e  327 (835)
T KOG2047|consen  250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE  327 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence            7899999999999999999999998875  2244445555555543221                      111222233


Q ss_pred             HHHHCCC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCCHH
Q 038914          288 LMILRGV-----------KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMH------DVVSYSILINGYCKTKDVE  350 (570)
Q Consensus       288 ~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~  350 (570)
                      .+.....           +.+...|..-  .-...|+..+-...+.++...- .|      -...|..+...|-..|+++
T Consensus       328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  328 SLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHH
Confidence            3332210           0111111111  1122355555666666655431 11      2235777788888888888


Q ss_pred             HHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc-----------------CHHHHHHHH
Q 038914          351 EGLNLYRKMLSKGIRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAA-----------------NTYIYTTFI  410 (570)
Q Consensus       351 ~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~  410 (570)
                      .|..+|++..+-..+--   ..+|......-.+..+++.|+++++.....--.|                 +..+|...+
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            88888888877533211   2344444455556777888888777765421110                 123455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHh---c
Q 038914          411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCN---D  486 (570)
Q Consensus       411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~  486 (570)
                      ......|-++....++++++...+ .++.+.......+....-++++.++|++-+..--.|+. ..|+..+.-+.+   .
T Consensus       485 DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            555667778888888888887664 33333333344455566778888888877665334554 567776665553   2


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHH-HH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 038914          487 GQMDKAHGLFLDMEAKGLEPNFV-IF-NTLMLGFIRNNETSKVIELLHRMDMRNVMPD--ASTLSIVVD  551 (570)
Q Consensus       487 g~~~~A~~~~~~~~~~~~~p~~~-~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~  551 (570)
                      ..++.|..+|+++++ |.+|... +. ......--+.|....|+.++++... ++++.  ...|+..++
T Consensus       564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~  630 (835)
T KOG2047|consen  564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK  630 (835)
T ss_pred             CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence            367888888888888 4565433 22 2222223346777888888888764 23443  234554444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=2.8e-11  Score=103.86  Aligned_cols=427  Identities=12%  Similarity=0.071  Sum_probs=260.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038914           82 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING  161 (570)
Q Consensus        82 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  161 (570)
                      +.-+....++..|+.+++.....+..-. .....-|..|.      ...|++++|+..|..+.... .++...+-.|..+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~------fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc  100 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCY------FHLGDYEEALNVYTFLMNKD-DAPAELGVNLACC  100 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHH------HhhccHHHHHHHHHHHhccC-CCCcccchhHHHH
Confidence            3455677899999999998876543222 22333333332      22469999999999888753 5677777778777


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038914          162 LCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYA  241 (570)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  241 (570)
                      +.-.|.+.+|.++..+..+           +.-.-..+....-+.++-++-..+.+.+.+.     ..--.+|.......
T Consensus       101 ~FyLg~Y~eA~~~~~ka~k-----------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR  164 (557)
T KOG3785|consen  101 KFYLGQYIEAKSIAEKAPK-----------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMR  164 (557)
T ss_pred             HHHHHHHHHHHHHHhhCCC-----------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHH
Confidence            7788999999998877533           3444455566666778877777777766653     23344566666666


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038914          242 NDWNEAKHLFIEMMDQGVQPNVVTFTV-IMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRAREL  320 (570)
Q Consensus       242 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  320 (570)
                      -.+.+|+++|..+...+  |.-...+. +.-+|.+..-++-+.++++-.++. ++.+....+..+....+.=.-..|..-
T Consensus       165 ~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E  241 (557)
T KOG3785|consen  165 MHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDE  241 (557)
T ss_pred             HHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence            78999999999998753  34444443 344677888888899998888776 232333333333222221111111111


Q ss_pred             HHHH--------------HhCCC------------CC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914          321 FVSM--------------ESNGC------------MH-----DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV  369 (570)
Q Consensus       321 ~~~~--------------~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  369 (570)
                      ...+              .+.+.            -|     -+...-.++-.|.+.+++++|..+.+++...    ++.
T Consensus       242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~  317 (557)
T KOG3785|consen  242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPY  317 (557)
T ss_pred             HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC----ChH
Confidence            1111              11110            00     1122334455678889999998887765431    222


Q ss_pred             hHHHHHHHHhhcC-------CHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 038914          370 TYHTLFLGLFEVH-------QVEHALKLFDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSY  441 (570)
Q Consensus       370 ~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  441 (570)
                      -|..-...++..|       ...-|.+.|.-.-.++..-|.. --..+..++.-..++++++.+++.+..--...|.. .
T Consensus       318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n  396 (557)
T KOG3785|consen  318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-N  396 (557)
T ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-h
Confidence            2222222222222       3445555555544433322221 12334444555567888888888877654333333 3


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY-NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIF-NTLMLGFI  519 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~  519 (570)
                      ..+.++++..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|+.++-++..   +.+..+. ..+...|.
T Consensus       397 ~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY  472 (557)
T KOG3785|consen  397 LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY  472 (557)
T ss_pred             hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence            45788999999999999999888765444 44444 5677899999999999887655432   2233343 34456788


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          520 RNNETSKVIELLHRMDMRNVMPDASTL  546 (570)
Q Consensus       520 ~~g~~~~a~~~~~~~~~~~~~p~~~~~  546 (570)
                      +.+.+=-|-+.|+.+...  .|+.+.|
T Consensus       473 k~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  473 KANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             HHHHHHHHHHhhhHHHcc--CCCcccc
Confidence            999998888888888754  4555544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.62  E-value=4.9e-11  Score=110.67  Aligned_cols=456  Identities=13%  Similarity=0.071  Sum_probs=218.4

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      .++|...++..+.+++..|  .++++....+-.+...|+-++|.......++.  .+.+...-.++..+.+.      ..
T Consensus        20 ~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~------dK   89 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRS------DK   89 (700)
T ss_pred             HHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhh------hh
Confidence            3456666666666666655  45555555555666667777777776666664  23333333333333332      35


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914          132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK  211 (570)
Q Consensus       132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  211 (570)
                      ++++|++.|..++..+ +.|..++.-+...-.+.|+++.....-....+..       +.....|..++.++.-.|+...
T Consensus        90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHH
Confidence            6777777777766654 3355566666655666666666666666655543       3334556666666666677777


Q ss_pred             HHHHHHHHHhCC-CCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914          212 AKELFLKMKDEN-INPNAVTYTSL------ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR  284 (570)
Q Consensus       212 a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  284 (570)
                      |..+++...+.. ..|+...+...      .......|..++|.+.+...... +.-....-..-...+.+.+++++|..
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            777666665543 13444433322      13344556666666655544332 11111222233445666677777777


Q ss_pred             HHHHHHHCCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          285 LLELMILRGVKPDTSTYNTLI-DGYCLTGKIDRAR-ELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK  362 (570)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  362 (570)
                      ++..++..  .||...|...+ .++....+.-++. .+|....+. .+........-+.......-.+..-+++..+.+.
T Consensus       241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K  317 (700)
T KOG1156|consen  241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK  317 (700)
T ss_pred             HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence            77777665  34444333333 3332222222333 444443332 1111111111111111112223334455555555


Q ss_pred             CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH----hCC----------CCcCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 038914          363 GIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR----RNH----------VAANTY--IYTTFIDGLCKNGYIVKAVELF  426 (570)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~  426 (570)
                      |+++-...   +...|-.....+-..++.-.+.    ..+          -+|...  ++..++..+-..|+++.|..++
T Consensus       318 g~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI  394 (700)
T KOG1156|consen  318 GVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI  394 (700)
T ss_pred             CCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            54432221   1111111111111111111110    000          023332  2334455566667777777777


Q ss_pred             HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914          427 RTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP  506 (570)
Q Consensus       427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  506 (570)
                      +.++.+. |.-+..|..-.+.+...|++++|...+++..+.. .+|...-.--+.-..+..+.++|.++.....+.|..-
T Consensus       395 d~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~  472 (700)
T KOG1156|consen  395 DLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA  472 (700)
T ss_pred             HHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence            7666542 2223344455566666677777777777666542 2232222233334445666666666666665544200


Q ss_pred             --C----HHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 038914          507 --N----FVIFNTL--MLGFIRNNETSKVIELLHRM  534 (570)
Q Consensus       507 --~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~  534 (570)
                        +    .-.|..+  ..+|.+.|++..|++-+..+
T Consensus       473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence              0    1122222  24555666665555444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.60  E-value=3.3e-10  Score=105.30  Aligned_cols=431  Identities=15%  Similarity=0.088  Sum_probs=278.9

Q ss_pred             HhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 038914           41 RFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINC  119 (570)
Q Consensus        41 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~  119 (570)
                      .....|..+...|+-++|....+..++.++  .+..+|+.++-.+....++++|++.|..++..  .||. ..+..+--.
T Consensus        43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslL  118 (700)
T KOG1156|consen   43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLL  118 (700)
T ss_pred             hHHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence            344566777789999999999999999888  88899999999999999999999999999988  4544 334333222


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH-
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT-  198 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-  198 (570)
                      .+.       .++++-....-.++.+.. +.....|..+..++.-.|++..|..+++...+...     -.|+...+.. 
T Consensus       119 Q~Q-------mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~s~~~~e~s  185 (700)
T KOG1156|consen  119 QIQ-------MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSPSKEDYEHS  185 (700)
T ss_pred             HHH-------HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCHHHHHHH
Confidence            222       347777777777777652 22445688888888889999999999999987652     1345444432 


Q ss_pred             -----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038914          199 -----IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL  273 (570)
Q Consensus       199 -----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (570)
                           -.....+.|..++|.+.+...... +......-..-...+.+.+++++|..++..++..  .||...|+..+..+
T Consensus       186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~  262 (700)
T KOG1156|consen  186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA  262 (700)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence                 234566778888888888765543 2223333345567788999999999999999986  46666666554444


Q ss_pred             H-hcCChhHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914          274 C-KNGKMDGAS-RLLELMILRGVKPDTSTYNTLIDGYCLTGK-IDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVE  350 (570)
Q Consensus       274 ~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  350 (570)
                      . +-.+.-++. .+|....+.  .|.......+--......+ .+..-.++....+.|+++   ++..+...|-.-...+
T Consensus       263 lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~  337 (700)
T KOG1156|consen  263 LGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA  337 (700)
T ss_pred             HHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH
Confidence            3 333333444 566655443  2222211111111111122 334455666777777553   3444444443322222


Q ss_pred             HHHHHHHHHH----hCCC----------CCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914          351 EGLNLYRKML----SKGI----------RPTV--VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLC  414 (570)
Q Consensus       351 ~A~~~~~~~~----~~~~----------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  414 (570)
                      -..++...+.    ..|.          +|..  .++..+++.+-..|+++.|..+++....+. +.-...|..-.+.+.
T Consensus       338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~k  416 (700)
T KOG1156|consen  338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFK  416 (700)
T ss_pred             HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHH
Confidence            1111111111    1111          3333  344556777888999999999999988763 333456666678888


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChh--------hHHH--HHHHHH
Q 038914          415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVV--------TYNI--MIHGLC  484 (570)
Q Consensus       415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~--l~~~~~  484 (570)
                      ..|+++.|..++++..+.+ .+|...-..-+.-..++.+.++|.++.....+.|.  +..        +|-.  =+.+|.
T Consensus       417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~  493 (700)
T KOG1156|consen  417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYL  493 (700)
T ss_pred             hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHH
Confidence            8999999999999999877 56666555666667788999999999998888764  221        2222  234577


Q ss_pred             hcCChhHHHHHHHHHH
Q 038914          485 NDGQMDKAHGLFLDME  500 (570)
Q Consensus       485 ~~g~~~~A~~~~~~~~  500 (570)
                      +.|++..|++=|..+.
T Consensus       494 r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  494 RQNKLGLALKKFHEIE  509 (700)
T ss_pred             HHHHHHHHHHHHhhHH
Confidence            7778877776555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.56  E-value=2.1e-09  Score=102.25  Aligned_cols=458  Identities=13%  Similarity=0.009  Sum_probs=257.1

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHH-------------------HHHHH----H
Q 038914           86 AKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEA-------------------AALFT----K  142 (570)
Q Consensus        86 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A-------------------~~~~~----~  142 (570)
                      ...+..++++.-+......+...+..++..+...+    ..+...++.+++                   .-..-    +
T Consensus       238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~----~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k  313 (799)
T KOG4162|consen  238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGF----ALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRK  313 (799)
T ss_pred             cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcc----cccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence            34567778888888887776666666655544433    234444455544                   22111    1


Q ss_pred             HHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          143 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      +....+..+..+|..+.-++...|+++.+.+.|++....-       ......|..+...|...|.-..|..+++.-...
T Consensus       314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~  386 (799)
T KOG4162|consen  314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKK  386 (799)
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence            1112234466778888888888999999999999987642       345678899999999999999999999877655


Q ss_pred             CCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhcC-----------ChhHHHHH
Q 038914          223 NINP-NAVTYTSLICGFC-YANDWNEAKHLFIEMMDQ--GV--QPNVVTFTVIMDELCKNG-----------KMDGASRL  285 (570)
Q Consensus       223 ~~~~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~  285 (570)
                      ...| +...+......|. +.+..++++++-.+++..  +.  ......|..+.-+|...-           ...++++.
T Consensus       387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa  466 (799)
T KOG4162|consen  387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA  466 (799)
T ss_pred             ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence            3223 3444444444443 456777887777777662  11  112344555544443221           23467778


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038914          286 LELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR  365 (570)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  365 (570)
                      +++..+.+. .|..+...+.--|+..++++.|.+...+..+.+...+...|..+.-++...+++.+|+.+.+.....- .
T Consensus       467 le~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~  544 (799)
T KOG4162|consen  467 LEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-G  544 (799)
T ss_pred             HHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h
Confidence            888877642 24444444555677888999999999999888667788889999989999999999999988877641 1


Q ss_pred             CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC---------------------C-------CCcCHHHHHHHHHHHHhcC
Q 038914          366 PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN---------------------H-------VAANTYIYTTFIDGLCKNG  417 (570)
Q Consensus       366 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~  417 (570)
                      .|......-+..-...++.+++......+...                     +       ......++..+.......+
T Consensus       545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~  624 (799)
T KOG4162|consen  545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL  624 (799)
T ss_pred             hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence            01111111111111133333333222221100                     0       0000111111111000000


Q ss_pred             ---CHHHHHHHHHHHHHcCCC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914          418 ---YIVKAVELFRTLRILKYE--LN------IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND  486 (570)
Q Consensus       418 ---~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  486 (570)
                         ..+..      +......  |+      ...|......+.+.++.++|...+.++... .+-....|...+..+...
T Consensus       625 ~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~  697 (799)
T KOG4162|consen  625 KSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVK  697 (799)
T ss_pred             hhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHH
Confidence               00000      0110111  11      123444455556666666666666665553 122344555555666666


Q ss_pred             CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHccCcccccc
Q 038914          487 GQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIE--LLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSI  563 (570)
Q Consensus       487 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  563 (570)
                      |.+.+|.+.|.....  +.|+ ..+...+..++.+.|+..-|..  ++..+.+.+ +.+.+.|..++..+.+.|+.+.|.
T Consensus       698 ~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa  774 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA  774 (799)
T ss_pred             HhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence            666666666666655  3343 4455666666666666555555  666666554 345666666666666666666665


Q ss_pred             hhh
Q 038914          564 PQF  566 (570)
Q Consensus       564 ~~~  566 (570)
                      +.|
T Consensus       775 ecf  777 (799)
T KOG4162|consen  775 ECF  777 (799)
T ss_pred             HHH
Confidence            554

>PRK12370 invasion protein regulator; Provisional

Probab=99.56  E-value=2.9e-12  Score=126.83  Aligned_cols=257  Identities=14%  Similarity=0.051  Sum_probs=169.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCC--cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038914           89 KHYDTVLSLFKRLNSTGLFPDLYAYNILIN-CFLQNGS--SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT  165 (570)
Q Consensus        89 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  165 (570)
                      +.+++|+++|+++++.  .|+.......+. ++...+.  .....+++++|...++++++.+ +.+..++..+..++...
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence            4578888888888877  555443332222 2221111  1224567889999999888874 33567777788888888


Q ss_pred             CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038914          166 GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWN  245 (570)
Q Consensus       166 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  245 (570)
                      |++++|+..|+++.+.+       +.+...+..+..++...|++++|+..+++..+.+.. +...+..++..+...|+++
T Consensus       352 g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~e  423 (553)
T PRK12370        352 SEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGID  423 (553)
T ss_pred             cCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHH
Confidence            99999999999988865       445677888888899999999999999998886432 3333344455566788899


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          246 EAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD-TSTYNTLIDGYCLTGKIDRARELFVSM  324 (570)
Q Consensus       246 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  324 (570)
                      +|+..++++.....+-+...+..+..++...|++++|...+.++...  .|+ ....+.+...+...|  +.|...++.+
T Consensus       424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~l  499 (553)
T PRK12370        424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREF  499 (553)
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence            99999888876532224455677778888899999999998887654  333 334455555666666  4677766665


Q ss_pred             HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          325 ESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK  362 (570)
Q Consensus       325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  362 (570)
                      .+.... .......+-..+.-.|+-+.+..+ +++.+.
T Consensus       500 l~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        500 LESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             HHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            543111 111111244445556676666655 777665

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.8e-09  Score=99.44  Aligned_cols=447  Identities=12%  Similarity=0.085  Sum_probs=265.8

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcch
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLC  128 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~  128 (570)
                      .+.|++++|++..++++...|  .+..++..-+.++.+.++|++|+.+.+.-...  ..+. ..|.-....|        
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y--------   90 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY--------   90 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH--------
Confidence            367899999999999999988  78889999999999999999999666544321  1111 1123322222        


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh--hHHHHHHHHHhc
Q 038914          129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV--TYTTIIDGLCKK  206 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~  206 (570)
                      +.+..++|+..++-+.    +.+..+...-...+.+.|++++|+.+|+.+.+.+       .++..  .-..++.+-.  
T Consensus        91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-------~dd~d~~~r~nl~a~~a--  157 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-------SDDQDEERRANLLAVAA--  157 (652)
T ss_pred             HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHH--
Confidence            3569999999998332    2244467777788899999999999999998875       22222  1122221111  


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CC------CCh-hhHHHHHHH
Q 038914          207 GFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-------VQ------PNV-VTFTVIMDE  272 (570)
Q Consensus       207 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~------~~~-~~~~~l~~~  272 (570)
                        .-.+ ++.+..... ...+...+......+...|+|.+|+++++...+.+       ..      -.. ..-..+.-+
T Consensus       158 --~l~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV  233 (652)
T KOG2376|consen  158 --ALQV-QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV  233 (652)
T ss_pred             --hhhH-HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence              0111 122222211 11123333444567778999999999999883321       11      001 112345556


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH---HHHhcCCH-H-HHHHHHHHHHhCCC----------CCCHhhH-
Q 038914          273 LCKNGKMDGASRLLELMILRGVKPDTSTYNTLID---GYCLTGKI-D-RARELFVSMESNGC----------MHDVVSY-  336 (570)
Q Consensus       273 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~-  336 (570)
                      +...|+..+|..++...++.+ .+|........+   +.....++ + .++..++.......          .-..... 
T Consensus       234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N  312 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN  312 (652)
T ss_pred             HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            778999999999999999875 334422222211   11111111 1 12222222111000          0011111 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914          337 SILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF--EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLC  414 (570)
Q Consensus       337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  414 (570)
                      +.++..|.  +..+.+.++......  ..|.. .+..++..+.  +...+..+..++....+........+....++...
T Consensus       313 ~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i  387 (652)
T KOG2376|consen  313 NALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI  387 (652)
T ss_pred             HHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            22222222  233333333322221  22332 2333333332  23357788888888877654444667777888889


Q ss_pred             hcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC--CCCCh----hhHHHHH
Q 038914          415 KNGYIVKAVELFR--------TLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG--LMADV----VTYNIMI  480 (570)
Q Consensus       415 ~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~l~  480 (570)
                      ..|+++.|.+++.        .+.+.+.  .+.+...+...+.+.++-+.|..++.+.++.-  -.+..    .++..++
T Consensus       388 s~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa  465 (652)
T KOG2376|consen  388 SQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA  465 (652)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence            9999999999999        5554443  34455566777888888888888888776521  01122    2333344


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      ..-.+.|+-++|..+++++.+. .++|..+...++.+|++. +.+.|..+-+++.
T Consensus       466 ~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~  518 (652)
T KOG2376|consen  466 EFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP  518 (652)
T ss_pred             HHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence            4445679999999999999986 366888888888888876 6788887776664

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=1.1e-12  Score=111.11  Aligned_cols=235  Identities=14%  Similarity=0.071  Sum_probs=192.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038914          300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF  379 (570)
Q Consensus       300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  379 (570)
                      --+.+.++|.+.|-+.+|.+.++..+..  .+-+.+|..+-.+|.+..+...|+.++.+-++. ++-+......+...+.
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence            3456788999999999999999988876  466778888999999999999999999888875 3334444455667777


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914          380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE  459 (570)
Q Consensus       380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  459 (570)
                      ..++.+++.++++...+.+ +.+......+...|.-.++++-|+.+++++...| ..++..|+.+.-+|...++++-++.
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence            8899999999999998875 5566677777777888899999999999999998 5688899999999999999999999


Q ss_pred             HHHhhhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          460 LFSSLPRVGLMAD--VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       460 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      .|++....--.|+  ..+|-.+....+..|++..|.+.|+-.+..+ ..+...++.|...-.+.|+.++|..+++.... 
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-  457 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS-  457 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-
Confidence            9998876543344  3678889999999999999999999888753 33678899998888999999999999999874 


Q ss_pred             CCCCC
Q 038914          538 NVMPD  542 (570)
Q Consensus       538 ~~~p~  542 (570)
                       +.|+
T Consensus       458 -~~P~  461 (478)
T KOG1129|consen  458 -VMPD  461 (478)
T ss_pred             -hCcc
Confidence             3455

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.2e-09  Score=96.10  Aligned_cols=293  Identities=13%  Similarity=0.024  Sum_probs=184.1

Q ss_pred             CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 038914          259 VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSI  338 (570)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  338 (570)
                      .+-|......+...+...|+..+|+..|++....+ +.+..........+...|+.++...+...+.... ......|..
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV  305 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV  305 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence            44566667777777777788788877777776542 1122233333444556677777777766665542 123444555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 038914          339 LINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY  418 (570)
Q Consensus       339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  418 (570)
                      -+.......+++.|+.+-.+.+..+.. +...+..-...+...+++++|.-.|+...... +-+...|..++.+|...|.
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence            555556667777777777777765322 44455555566677778888777777766542 3456777788888888888


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHh-cCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHH
Q 038914          419 IVKAVELFRTLRILKYELNIVSYNCLI-DGLCK-HGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGL  495 (570)
Q Consensus       419 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~  495 (570)
                      +.+|..+-+...+.- +.+..+...+. ..+.. ...-++|.++++...+  +.|+- ...+.+...|...|..++++.+
T Consensus       384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence            877777766655432 45555555542 23322 2334677777777766  35554 4556667777778888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccccc
Q 038914          496 FLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNS  562 (570)
Q Consensus       496 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  562 (570)
                      +++.+.  ..||....+.|...+...+.+++|+..|...+..  .|...--..=++.+.+..+..+|
T Consensus       461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~~sl~Gl~~lEK~~~~~DA  523 (564)
T KOG1174|consen  461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSKRTLRGLRLLEKSDDESDA  523 (564)
T ss_pred             HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHhccCCCCc
Confidence            888777  4677777788888888888888888888887754  35443333333344444443343

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.51  E-value=1.1e-09  Score=104.74  Aligned_cols=293  Identities=11%  Similarity=0.037  Sum_probs=194.6

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE  130 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  130 (570)
                      ..|++++|+..++.....-.  +........+..+.+.|++++|..+|..+++.  .|+...|...+..+..... -...
T Consensus        16 e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~-~~~~   90 (517)
T PF12569_consen   16 EAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL-QLSD   90 (517)
T ss_pred             HCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc-cccc
Confidence            35799999999988766554  55566778889999999999999999999998  6777777777666652211 0112


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                      ...+....+|+++...  -|...+...+.-.+..-.++. .+...+..+...|      +   +.+|..|-..|....+.
T Consensus        91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~~K~  159 (517)
T PF12569_consen   91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDPEKA  159 (517)
T ss_pred             ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcChhHH
Confidence            3577888888888766  344444444433333322333 3455566666655      2   34566666666655555


Q ss_pred             HHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038914          210 DKAKELFLKMKDE----N----------INPNA--VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL  273 (570)
Q Consensus       210 ~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (570)
                      +-..+++..+...    +          -+|..  .++.-+...|-..|++++|+.++++.+...+. .+..|..-.+.+
T Consensus       160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Karil  238 (517)
T PF12569_consen  160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARIL  238 (517)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence            5555666555432    0          12333  34455677788888888888888888876322 356777788888


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------hhHHHHHHHHHh
Q 038914          274 CKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV--------VSYSILINGYCK  345 (570)
Q Consensus       274 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~  345 (570)
                      -+.|++.+|.+.++.....+ .-|...-+..+..+.+.|++++|.+++......+..+..        +.......+|.+
T Consensus       239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r  317 (517)
T PF12569_consen  239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR  317 (517)
T ss_pred             HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888764 235566666777788888888888888877665532211        112334667788


Q ss_pred             cCCHHHHHHHHHHHHh
Q 038914          346 TKDVEEGLNLYRKMLS  361 (570)
Q Consensus       346 ~~~~~~A~~~~~~~~~  361 (570)
                      .|++..|++.|..+.+
T Consensus       318 ~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  318 QGDYGLALKRFHAVLK  333 (517)
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            8888888777776665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=3.5e-09  Score=97.62  Aligned_cols=401  Identities=12%  Similarity=0.031  Sum_probs=225.3

Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914          129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF  208 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  208 (570)
                      ..|++++|.+...+++..+ +.+..++..-+.++.+.++|++|+.+.+.-....        .+...+.--+.+..+.+.
T Consensus        24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--------~~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--------VINSFFFEKAYCEYRLNK   94 (652)
T ss_pred             cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--------hcchhhHHHHHHHHHccc
Confidence            5689999999999999876 5567788888889999999999996665533211        111111233455668899


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCChhHHHHHHH
Q 038914          209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDE-LCKNGKMDGASRLLE  287 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~  287 (570)
                      .++|+..++-...    .+..+...-...+.+.|++++|.++|+.+.+.+.+ +   +...+++ +...+---.+. +  
T Consensus        95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~--  163 (652)
T KOG2376|consen   95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-L--  163 (652)
T ss_pred             HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-H--
Confidence            9999999983322    24446666678889999999999999999775332 1   1111111 00000001111 1  


Q ss_pred             HHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC------H-hhHHHHHHHHHhcCCHHH
Q 038914          288 LMILRGVKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNG-------CMHD------V-VSYSILINGYCKTKDVEE  351 (570)
Q Consensus       288 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~l~~~~~~~~~~~~  351 (570)
                       +......|+  ...+......+...|++.+|+++++.....+       -..+      . .+--.+..++-..|+.++
T Consensus       164 -~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  164 -LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             -HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence             111111221  1122222334455666777766666652110       0000      0 011223344555666677


Q ss_pred             HHHHHHHHHhCCCCCChhhH----HHHHHH---------------------------------------------HhhcC
Q 038914          352 GLNLYRKMLSKGIRPTVVTY----HTLFLG---------------------------------------------LFEVH  382 (570)
Q Consensus       352 A~~~~~~~~~~~~~~~~~~~----~~l~~~---------------------------------------------~~~~~  382 (570)
                      |..++...+..... |....    +.++..                                             ....+
T Consensus       243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn  321 (652)
T KOG2376|consen  243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN  321 (652)
T ss_pred             HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77766666654321 22111    111100                                             00111


Q ss_pred             CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038914          383 QVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK--NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWEL  460 (570)
Q Consensus       383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  460 (570)
                      ..+.+.++.....  +..| ...+..++..+.+  ......+..++....+....-...+....+...+..|+++.|.++
T Consensus       322 k~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  322 KMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             hHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            1112211111110  1112 2233333333222  224666777777665543222345566677778899999999999


Q ss_pred             HH--------hhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHH
Q 038914          461 FS--------SLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK--GLEPN----FVIFNTLMLGFIRNNETSK  526 (570)
Q Consensus       461 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~  526 (570)
                      +.        .+.+.+..|  .+...+...+.+.++.+.|..++.+++..  .-.+.    ..++..++..-.+.|+.++
T Consensus       399 l~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e  476 (652)
T KOG2376|consen  399 LSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE  476 (652)
T ss_pred             HHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence            99        555543333  44556667777777777777777776542  01112    2233444455567899999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038914          527 VIELLHRMDMRNVMPDASTLSIVVDLLVKNE  557 (570)
Q Consensus       527 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  557 (570)
                      |..+++++.+.+ ++|..+...++.+|++..
T Consensus       477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~d  506 (652)
T KOG2376|consen  477 ASSLLEELVKFN-PNDTDLLVQLVTAYARLD  506 (652)
T ss_pred             HHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence            999999999864 688999999999988754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=2.9e-09  Score=93.74  Aligned_cols=424  Identities=15%  Similarity=0.113  Sum_probs=272.7

Q ss_pred             CCCChhHHHHHHHHHHhc------------------CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 038914           51 TTITPNDALCVFDYMLNM------------------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA  112 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  112 (570)
                      +..++..|.+.|+.+++.                  .|.+.+...-...+.+|...++-+.|+....+..+....|   .
T Consensus        55 h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p---~  131 (564)
T KOG1174|consen   55 KERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP---R  131 (564)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccch---h
Confidence            344566677777666542                  1223344455678888889999999998887766543222   2


Q ss_pred             HHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCcccC
Q 038914          113 YNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG--HTIVALNLFEEMANGNGEIGVVCK  190 (570)
Q Consensus       113 ~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~  190 (570)
                      .+.++.-+...|      ++..++.-.+...+..- +   .... .|.++.+.+  -++.+--.   |....      .+
T Consensus       132 inlMla~l~~~g------~r~~~~vl~ykevvrec-p---~aL~-~i~~ll~l~v~g~e~~S~~---m~~~~------~~  191 (564)
T KOG1174|consen  132 INLMLARLQHHG------SRHKEAVLAYKEVIREC-P---MALQ-VIEALLELGVNGNEINSLV---MHAAT------VP  191 (564)
T ss_pred             HHHHHHHHHhcc------ccccHHHHhhhHHHHhc-c---hHHH-HHHHHHHHhhcchhhhhhh---hhhee------cC
Confidence            233344344433      33334444444444321 1   1111 122222211  12222111   11111      33


Q ss_pred             CChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 038914          191 PDTVTYTTIIDGLCK--KGFVDKAKELFLKMKDE-NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFT  267 (570)
Q Consensus       191 ~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  267 (570)
                      |+.......+.+++.  .++-..|.+.+-.+... -++-|+.....+..++...|+..+|+..|+.....++. +.....
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD  270 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD  270 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence            443333334444433  34434444443333222 25668888899999999999999999999998775321 233333


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914          268 VIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTK  347 (570)
Q Consensus       268 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  347 (570)
                      .....+...|+++....+...+.... ..+...|..-+......+++..|+.+-++.++.+ +.+...+-.-...+...+
T Consensus       271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~  348 (564)
T KOG1174|consen  271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE  348 (564)
T ss_pred             HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence            34445567889998888888877652 2233344444455567788999999999888764 335556666677888999


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH-HHHH-hcCCHHHHHHH
Q 038914          348 DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI-DGLC-KNGYIVKAVEL  425 (570)
Q Consensus       348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~  425 (570)
                      +.+.|.-.|+..+... +-+..+|..++.+|...|++.+|..+-....+. ++.+..++..+. ..+. ...--++|..+
T Consensus       349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence            9999999999888752 236789999999999999999998877666553 345566665553 2332 23345789999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914          426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE  505 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  505 (570)
                      ++...... |.-....+.+...+...|..+.+..+++....  ..||....+.|+..+...+.+++|++.|..++..  .
T Consensus       427 ~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--d  501 (564)
T KOG1174|consen  427 AEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--D  501 (564)
T ss_pred             HHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--C
Confidence            98887664 44456778888889999999999999999887  4788899999999999999999999999998884  4


Q ss_pred             CC
Q 038914          506 PN  507 (570)
Q Consensus       506 p~  507 (570)
                      |+
T Consensus       502 P~  503 (564)
T KOG1174|consen  502 PK  503 (564)
T ss_pred             cc
Confidence            54

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.49  E-value=1.5e-09  Score=103.80  Aligned_cols=295  Identities=15%  Similarity=0.124  Sum_probs=197.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch-HH
Q 038914           78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT-YN  156 (570)
Q Consensus        78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~  156 (570)
                      ..-...++...|++++|++.++.-...  -+|...+......+      +.+.|+.++|..+|..+++.+  |+... |.
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~l------l~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~   76 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAEL------LLKLGRKEEAEKIYRELIDRN--PDNYDYYR   76 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence            333456678899999999999886655  45554444333322      334569999999999999984  44444 44


Q ss_pred             HHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHH
Q 038914          157 TLINGLCRT-----GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV-DKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       157 ~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      .+..+..-.     .+.+...++++++....        |.......+.-.+.....+ ..+...+..+...|+|   .+
T Consensus        77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---sl  145 (517)
T PF12569_consen   77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SL  145 (517)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hH
Confidence            455544222     35677788888887754        4333333333222222223 3445566677777765   34


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMDQ----G----------VQPNV--VTFTVIMDELCKNGKMDGASRLLELMILRGV  294 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  294 (570)
                      |..|-..|.......-...++......    +          -+|+.  +++..+...|...|++++|+.++++.+..  
T Consensus       146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--  223 (517)
T PF12569_consen  146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--  223 (517)
T ss_pred             HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence            666666666565555555666555432    1          12333  35566777888899999999999999887  


Q ss_pred             CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----
Q 038914          295 KPD-TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV----  369 (570)
Q Consensus       295 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----  369 (570)
                      .|+ +..|..-.+.+-..|++.+|.+.++.....+ ..|...-+..+..+.+.|++++|.+++......+..|...    
T Consensus       224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m  302 (517)
T PF12569_consen  224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM  302 (517)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence            344 6678888889999999999999999988875 3366677777888889999999999998887765433221    


Q ss_pred             ----hHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 038914          370 ----TYHTLFLGLFEVHQVEHALKLFDEMRR  396 (570)
Q Consensus       370 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~  396 (570)
                          -......+|.+.|++..|++.|..+.+
T Consensus       303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  303 QCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                124456778888888888887777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=99.48  E-value=4.2e-11  Score=118.66  Aligned_cols=218  Identities=14%  Similarity=0.075  Sum_probs=156.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC---------RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID  201 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (570)
                      +.+++|+..|++.++..+ .+...|..+..++.         ..+++++|...++++.+.+       +.+...+..+..
T Consensus       275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~  346 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL  346 (553)
T ss_pred             HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence            467899999999988732 23455665655443         2345789999999998876       456778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                      ++...|++++|+..|+++.+.+ +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++
T Consensus       347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~ee  424 (553)
T PRK12370        347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDD  424 (553)
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHH
Confidence            8889999999999999988874 335677888888899999999999999998886433 22233344555667888889


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                      |...++++.....+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|...|  ++|...++.+.+
T Consensus       425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            99988888765322244456677778888899999998888876542 223444555666666666  467776666655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.48  E-value=5.3e-12  Score=107.03  Aligned_cols=230  Identities=12%  Similarity=0.059  Sum_probs=198.9

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914          332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID  411 (570)
Q Consensus       332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  411 (570)
                      |-.--+.+..+|.+.|.+.+|.+.|+..++.  .|-+.||..+...|.+..+...|+.++.+-.+. ++.+......+..
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR  298 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence            3333467899999999999999999998886  567889999999999999999999999998876 3556666777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      .+...++.++|.++++.+.+.. +.++....++...|.-.++++-|+++|.++++.|+ .+...|+.++-+|...++++-
T Consensus       299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence            8999999999999999999876 67888888888899999999999999999999884 578899999999999999999


Q ss_pred             HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914          492 AHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFK  567 (570)
Q Consensus       492 A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  567 (570)
                      ++.-|++++..--.|+  ..+|..+.......|++.-|.+.|+-.+..+ ....+.++.+.-.-.+.|+.++|...+.
T Consensus       377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~  453 (478)
T KOG1129|consen  377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN  453 (478)
T ss_pred             hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence            9999999988644455  4578888888889999999999999988654 4457888888888899999999988765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.47  E-value=1.1e-10  Score=99.93  Aligned_cols=302  Identities=12%  Similarity=0.071  Sum_probs=209.0

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC  119 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  119 (570)
                      +.+...|..++.+|++.+|+..|..+++.+|  .+-.++..-+..|...|+-..|+.-+.+.++.  .||-.      .+
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~------~A  108 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFM------AA  108 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHH------HH
Confidence            3455677778889999999999999999998  78888999999999999999999999999987  77743      33


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC--cchHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPD--VFTYNTL------------INGLCRTGHTIVALNLFEEMANGNGEI  185 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~  185 (570)
                      -...|..+.++|++++|..-|+.++......+  ..++..+            +..+.-.|+...|+.+...+++..   
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---  185 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---  185 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---
Confidence            44556788899999999999999998743211  1122211            223445788888888888888864   


Q ss_pred             CcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 038914          186 GVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVT  265 (570)
Q Consensus       186 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  265 (570)
                          +.|+..+..-..+|...|.+..|+.-++...+.. ..+..++..+...+...|+.+.++....+.++.  .|+...
T Consensus       186 ----~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~  258 (504)
T KOG0624|consen  186 ----PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKL  258 (504)
T ss_pred             ----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchhh
Confidence                5677888888888999999888888887776653 236677777778888888888888888888775  344322


Q ss_pred             HHH----H---------HHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914          266 FTV----I---------MDELCKNGKMDGASRLLELMILRGVKPD---TSTYNTLIDGYCLTGKIDRARELFVSMESNGC  329 (570)
Q Consensus       266 ~~~----l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  329 (570)
                      +..    +         +......++|.++++..+...+......   ...+..+..++...+++.+|++...++++.. 
T Consensus       259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-  337 (504)
T KOG0624|consen  259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-  337 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-
Confidence            111    1         1223445556666666666555432211   1234444555566666666666666666553 


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          330 MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK  362 (570)
Q Consensus       330 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  362 (570)
                      +.|+.++..-..+|.-..+++.|+.-|+...+.
T Consensus       338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            234556666666666666666666666666654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=5.5e-10  Score=101.78  Aligned_cols=439  Identities=14%  Similarity=0.060  Sum_probs=229.9

Q ss_pred             hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914           43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ  122 (570)
Q Consensus        43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (570)
                      ...|...++.|+++.|+..|..++..+|  +|...|..-..+|...|+|++|++=-.+.++.  .|+..      .+|.+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~------kgy~r   75 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWA------KGYSR   75 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchh------hHHHH
Confidence            4457777889999999999999999999  68889999999999999999999988888877  55432      45555


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHH---HHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA---LNLFEEMANGNGEIGVVCKPDTVTYTTI  199 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~~~~l  199 (570)
                      .|..+.-.|++++|+..|.+-++.. +.+...++.+..++.......+.   -.++..........   .......|..+
T Consensus        76 ~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~---~~~~~~~~~~~  151 (539)
T KOG0548|consen   76 KGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN---YSLSDPAYVKI  151 (539)
T ss_pred             hHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh---hhhccHHHHHH
Confidence            5555555689999999999988863 22445566666665111000000   00111110000000   00001112222


Q ss_pred             HHHHHhc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH----HHHHHHHHHHH-CCCCCChhhH
Q 038914          200 IDGLCKK-------GFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-ANDWN----EAKHLFIEMMD-QGVQPNVVTF  266 (570)
Q Consensus       200 ~~~~~~~-------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~a~~~~~~~~~-~~~~~~~~~~  266 (570)
                      +..+-+.       .+.....+..-.+...+..    .+...-..... .....    .......+..+ ....--..-.
T Consensus       152 l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e  227 (539)
T KOG0548|consen  152 LEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE  227 (539)
T ss_pred             HHHhhcCcHhhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence            2211110       0000000100000000000    00000000000 00000    00000000000 0000011224


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH-------H
Q 038914          267 TVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSI-------L  339 (570)
Q Consensus       267 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l  339 (570)
                      ..++++..+..+++.+++-+.......  .+..-++....+|...|.+.++....+...+.|.. ....|+.       +
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~  304 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence            456667777777777777777777653  35555566666777777777776666665554421 1222222       3


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 038914          340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYI  419 (570)
Q Consensus       340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  419 (570)
                      ..+|.+.++++.++..|.+.......|+.         ..+....+++....+...-.+... ..-...-...+.+.|++
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY  374 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence            33555566777777777776554222221         122233344444443332222111 11222235556677777


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM  499 (570)
Q Consensus       420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  499 (570)
                      ..|+..|.++++.. |.|...|....-+|.+.|.+..|+.-.+..++.. ++....|..=+.++....+++.|.+.|.+.
T Consensus       375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777766 6677777777777777777777777777666642 223345555555666667777777777777


Q ss_pred             HHCCCCCCHHHHHHHHH
Q 038914          500 EAKGLEPNFVIFNTLML  516 (570)
Q Consensus       500 ~~~~~~p~~~~~~~l~~  516 (570)
                      ++.  .|+..-+...+.
T Consensus       453 le~--dp~~~e~~~~~~  467 (539)
T KOG0548|consen  453 LEL--DPSNAEAIDGYR  467 (539)
T ss_pred             Hhc--CchhHHHHHHHH
Confidence            764  354444433333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.46  E-value=1.1e-09  Score=103.94  Aligned_cols=126  Identities=17%  Similarity=0.027  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHH
Q 038914          406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLC  484 (570)
Q Consensus       406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~  484 (570)
                      |......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|......  .|+. .....++.++.
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence            3344444555555555555555554433 344455555555555566666666666655552  3332 45555666666


Q ss_pred             hcCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          485 NDGQMDKAHG--LFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       485 ~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      ..|+..-|..  ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....
T Consensus       730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            6665555555  555555532 2245566666666666666666666666555

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.44  E-value=1.7e-10  Score=102.25  Aligned_cols=200  Identities=13%  Similarity=0.041  Sum_probs=125.0

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 038914          333 VVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDG  412 (570)
Q Consensus       333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  412 (570)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            3445555566666666666666666665542 1234455555666666666666666666665543 3344555566666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          413 LCKNGYIVKAVELFRTLRILKY-ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      +...|++++|...++++..... +.....+..+..++...|++++|...+++..+.. +.+...+..++..+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            6677777777777777665321 1233455566667777777777777777777642 2234566677777777788888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          492 AHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      |..+++++... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            87777777665 233455566666677777777777777776653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=1.4e-10  Score=102.70  Aligned_cols=200  Identities=16%  Similarity=0.121  Sum_probs=123.3

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      ...+..+...+...|++++|...++++.+..       +.+...+..+...+...|++++|.+.+++..... +.+...+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~  102 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL  102 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence            3455666677777777777777777776653       3345666677777777777777777777776653 2345566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQGVQ-PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL  310 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  310 (570)
                      ..+...+...|++++|...++........ .....+..+..++...|++++|...+++..... +.+...+..+...+..
T Consensus       103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  181 (234)
T TIGR02521       103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL  181 (234)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence            66667777777777777777776653211 123345555666666677777777766666542 2234455556666666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          311 TGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                      .|++++|...++++.... +.+...+..+...+...|+.++|..+.+.+..
T Consensus       182 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       182 RGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            666666666666665542 33444455555556666666666666555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.42  E-value=1.3e-10  Score=94.05  Aligned_cols=199  Identities=13%  Similarity=-0.023  Sum_probs=144.9

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-AYNILIN  118 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~  118 (570)
                      ......|...+..|++..|..-++++++.+|  .+..+|..++..|.+.|+.+.|.+.|+++++.  .|+.. ..+..- 
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG-  110 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYG-  110 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhh-
Confidence            4455566677888899999999999998888  78888888888899999999999999988887  45433 223222 


Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVFG-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT  197 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (570)
                            .-+|.+|++++|...|++.+..- +..-..+|..++-+..+.|+++.|...|++.++.+       +....+..
T Consensus       111 ------~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-------p~~~~~~l  177 (250)
T COG3063         111 ------AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-------PQFPPALL  177 (250)
T ss_pred             ------HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-------cCCChHHH
Confidence                  22444568888888888877642 12234567777777778888888888888888765       33456677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      .+.....+.|++-.|...++.....+. ++..+.-..|..-...|+.+.+.++=..+.+.
T Consensus       178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         178 ELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            777778888888888888888777655 67777777777777778877776665555543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.1e-08  Score=93.56  Aligned_cols=421  Identities=13%  Similarity=0.055  Sum_probs=258.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-cchHHHHH
Q 038914           81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD-VFTYNTLI  159 (570)
Q Consensus        81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~  159 (570)
                      -+.+.+..|+++.|+.+|-+++...+ ++...|..-..+++..       |+|++|++--.+..+.  .|+ ...|+.++
T Consensus         8 kgnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~-------~~~~~al~da~k~~~l--~p~w~kgy~r~G   77 (539)
T KOG0548|consen    8 KGNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASL-------GSYEKALKDATKTRRL--NPDWAKGYSRKG   77 (539)
T ss_pred             HHHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHH-------hhHHHHHHHHHHHHhc--CCchhhHHHHhH
Confidence            34566788999999999999998853 3666777777777765       4999999888877776  454 46799999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 038914          160 NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLI----  235 (570)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----  235 (570)
                      .++.-.|++++|+..|.+.++.+       +.+...+..+..++...  .. +-+.|.         ++..|..+.    
T Consensus        78 aa~~~lg~~~eA~~ay~~GL~~d-------~~n~~L~~gl~~a~~~~--~~-~~~~~~---------~p~~~~~l~~~p~  138 (539)
T KOG0548|consen   78 AALFGLGDYEEAILAYSEGLEKD-------PSNKQLKTGLAQAYLED--YA-ADQLFT---------KPYFHEKLANLPL  138 (539)
T ss_pred             HHHHhcccHHHHHHHHHHHhhcC-------CchHHHHHhHHHhhhHH--HH-hhhhcc---------CcHHHHHhhcChh
Confidence            99999999999999999999875       45566777777776111  11 111111         111121111    


Q ss_pred             -HHHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcC-------------------Chh----HHHHHHHH
Q 038914          236 -CGFCYANDWNEAKHLFIEMMDQGVQPNVVTF---TVIMDELCKNG-------------------KMD----GASRLLEL  288 (570)
Q Consensus       236 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g-------------------~~~----~a~~~~~~  288 (570)
                       +.+.....+..-   ++.+ ..+. .+...|   ..++.+.....                   .+.    .......+
T Consensus       139 t~~~~~~~~~~~~---l~~~-~~~p-~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d  213 (539)
T KOG0548|consen  139 TNYSLSDPAYVKI---LEII-QKNP-TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIED  213 (539)
T ss_pred             hhhhhccHHHHHH---HHHh-hcCc-HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccch
Confidence             111111111111   1111 1000 000000   00111111000                   000    00000000


Q ss_pred             HHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          289 MILR-GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT  367 (570)
Q Consensus       289 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  367 (570)
                      ..+. ....-..-...++++..+..+++.|.+.+.......  .+..-++....+|...|.+......-...++.|.. .
T Consensus       214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~  290 (539)
T KOG0548|consen  214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L  290 (539)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence            0000 000011234557778888888999999999888764  45666777778888888888877777776665432 1


Q ss_pred             hh-------hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-h
Q 038914          368 VV-------TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNI-V  439 (570)
Q Consensus       368 ~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~  439 (570)
                      ..       .+..+..++.+.++++.++..|.........|+.         ..+....+++....+.....+  |.. .
T Consensus       291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~  359 (539)
T KOG0548|consen  291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAE  359 (539)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHH
Confidence            11       2233445666778889999999887665444332         233445555555555544332  222 1


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGF  518 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~  518 (570)
                      -...-...+.+.|++..|...|.+++... +.|...|.....||.+.|.+..|++-.+..++.  .|+ ...|..-..++
T Consensus       360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al  436 (539)
T KOG0548|consen  360 EEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAAL  436 (539)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence            12223667889999999999999999874 557789999999999999999999998888885  444 45666666677


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038914          519 IRNNETSKVIELLHRMDMRNVMPD-ASTLSIVVDLLV  554 (570)
Q Consensus       519 ~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~  554 (570)
                      ....+|++|.+.|++.++.+  |+ ......+..+..
T Consensus       437 ~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  437 RAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence            77889999999999999765  54 445555555544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.35  E-value=5.3e-10  Score=90.66  Aligned_cols=196  Identities=12%  Similarity=-0.003  Sum_probs=113.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914          336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK  415 (570)
Q Consensus       336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  415 (570)
                      ...+.-.|...|+...|.+-+++.++.... +..++..+...|.+.|+.+.|.+.|+...+.. +.+..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            444555566666666666666666665221 34455556666666666666666666666543 3445566666666666


Q ss_pred             cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914          416 NGYIVKAVELFRTLRILK-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHG  494 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  494 (570)
                      .|++++|...|++..... ...-..+|..+.-+..+.|+++.|...|++.++.. +....+...+.......|++..|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            666666666666655421 11123455566666666666666666666666642 2223455556666666666666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          495 LFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      +++.....+. ++..+....+..--..|+.+.+-++=.++.
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            6666655533 555555555555556666666655555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.34  E-value=1.6e-10  Score=108.90  Aligned_cols=248  Identities=17%  Similarity=0.083  Sum_probs=151.9

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc-----
Q 038914           75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF-----  146 (570)
Q Consensus        75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----  146 (570)
                      ..+...++..|..+|+++.|..+++.+++.-   .-.+.......+.   ..|..|...+++++|..+|++++..     
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~---~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLN---ILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHH---HHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            3455669999999999999999999998761   0012222222222   2445677788999999999998753     


Q ss_pred             CC-CCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 038914          147 GC-EPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDT-VTYTTIIDGLCKKGFVDKAKELFLKMKDE-  222 (570)
Q Consensus       147 ~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-  222 (570)
                      |. .|. ..+++.|..+|.+.|++++|...++.+.+..........|++ ..++.++..+...+++++|..+++...+. 
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            21 122 246888889999999999999998888754311000012232 24566677777788888888887765432 


Q ss_pred             --CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          223 --NINP----NAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-------VQPNVVTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       223 --~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                        -+.+    -..+++.|...|...|++++|.+++++++...       ..-....++.+...|.+.+.+++|.++|.+.
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence              0111    23466677777777777777777777665431       1111334556666666666666666666654


Q ss_pred             HHC----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          290 ILR----G--VKPDTSTYNTLIDGYCLTGKIDRARELFVSME  325 (570)
Q Consensus       290 ~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  325 (570)
                      ...    |  .+....+|..|+..|...|+++.|+++.+.+.
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            432    1  11112345555555555555555555555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.34  E-value=2.5e-09  Score=96.90  Aligned_cols=218  Identities=14%  Similarity=0.043  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHhcCC-CC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914          131 SRIMEAAALFTKLRVFGC-EP--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG  207 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  207 (570)
                      +..+.++..+.+++.... .|  ....|..+...+...|+.++|+..|+++.+.+       +.+...|+.+...+...|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g  112 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAG  112 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCC
Confidence            466777777877775421 11  13457777778888888888888888888865       455778888888888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914          208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE  287 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  287 (570)
                      ++++|.+.|++..+... -+..+|..+..++...|++++|++.++...+..  |+..........+...+++++|...+.
T Consensus       113 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~  189 (296)
T PRK11189        113 NFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLK  189 (296)
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence            88888888888887532 256677778888888888888888888888753  333222222223345677888888886


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN---GC---MHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                      +..... .++... ..+  .....|+...+ ..++.+.+.   ..   +.....|..+...+...|++++|+..|++..+
T Consensus       190 ~~~~~~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~  264 (296)
T PRK11189        190 QRYEKL-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA  264 (296)
T ss_pred             HHHhhC-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            655432 222221 122  22334444333 233333321   00   11234677777778888888888888888777


Q ss_pred             CC
Q 038914          362 KG  363 (570)
Q Consensus       362 ~~  363 (570)
                      .+
T Consensus       265 ~~  266 (296)
T PRK11189        265 NN  266 (296)
T ss_pred             hC
Confidence            53

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.33  E-value=1e-08  Score=100.20  Aligned_cols=482  Identities=13%  Similarity=0.027  Sum_probs=291.8

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      +.+.+...|+..|-++++.++  .-..+|..|+..|....+...|.+.|+++.+.. ..+..........+++.      
T Consensus       469 ~~rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~------  539 (1238)
T KOG1127|consen  469 CMRKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE------  539 (1238)
T ss_pred             HhhhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc------
Confidence            456678999999999999988  667889999999999889999999999998763 12333444445555554      


Q ss_pred             hCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914          130 ESRIMEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF  208 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  208 (570)
                       .+++.|..+.-..-+.... .-...|....-.|.+.+++.+|+.-|+...+.+       +.|...|..++.+|...|+
T Consensus       540 -~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-------PkD~n~W~gLGeAY~~sGr  611 (1238)
T KOG1127|consen  540 -STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-------PKDYNLWLGLGEAYPESGR  611 (1238)
T ss_pred             -ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-------chhHHHHHHHHHHHHhcCc
Confidence             5888888884333322100 011234445666788999999999999999976       6789999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCChhH
Q 038914          209 VDKAKELFLKMKDENINPNA-VTYTSLICGFCYANDWNEAKHLFIEMMDQG------VQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                      +..|.++|.++...  .|+. ..---..-..+..|.+.++++.+..++...      ...-..++..+...+...|-..+
T Consensus       612 y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k  689 (1238)
T KOG1127|consen  612 YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK  689 (1238)
T ss_pred             eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999988775  3332 222223344568899999999998887531      11112333333334444444444


Q ss_pred             HHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH---H-
Q 038914          282 ASRLLELMIL-------RGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV---E-  350 (570)
Q Consensus       282 a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~-  350 (570)
                      +..+++..++       .....+...|..+..+          ..+|-... .+ .|+......+..-.-..+..   + 
T Consensus       690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~  757 (1238)
T KOG1127|consen  690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDL  757 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhH
Confidence            4444444332       2212233333333222          22222222 11 12222111221111112211   1 


Q ss_pred             --HHHHHHHHHHhCCCCCChhhHHHHHHHHhh-------c-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914          351 --EGLNLYRKMLSKGIRPTVVTYHTLFLGLFE-------V-HQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV  420 (570)
Q Consensus       351 --~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  420 (570)
                        -+.+.+-.-.+  ...+..++..++..|.+       . .+...|+..++...+.. ..+...|+.+.- ....|++.
T Consensus       758 l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva  833 (1238)
T KOG1127|consen  758 LFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVA  833 (1238)
T ss_pred             HHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhh
Confidence              11111111111  11123344444443332       1 22346777777766542 334555555554 46668888


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      -+...|-+..... +....+|..+...+....+++.|...|...+... +.|...|..........|+.-++..+|..--
T Consensus       834 ~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~  911 (1238)
T KOG1127|consen  834 CAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSD  911 (1238)
T ss_pred             hhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence            8888877766554 6677888888888889999999999999888742 3355667666666667888888888876622


Q ss_pred             ----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914          501 ----AKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM---------RNVMPDASTLSIVVDLLVKNEISLNSIPQFK  567 (570)
Q Consensus       501 ----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  567 (570)
                          ..|--|+...|..........|+.++-+...+++..         .+.+.+.-.|...+..+.+.+.+.++.+.+.
T Consensus       912 el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~  991 (1238)
T KOG1127|consen  912 ELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELAT  991 (1238)
T ss_pred             HhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence                224455666666666666677777766555554421         1333345567777777777777777776655


Q ss_pred             h
Q 038914          568 R  568 (570)
Q Consensus       568 ~  568 (570)
                      |
T Consensus       992 R  992 (1238)
T KOG1127|consen  992 R  992 (1238)
T ss_pred             H
Confidence            4

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.33  E-value=3.5e-10  Score=108.76  Aligned_cols=273  Identities=15%  Similarity=0.182  Sum_probs=181.5

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914          215 LFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV  294 (570)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  294 (570)
                      ++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            4556667788888889999999999999988888 8888877777777788888888877777776665           


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHH
Q 038914          295 KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHT  373 (570)
Q Consensus       295 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~  373 (570)
                      .|...+|..|..+|...||+.. .+..++           ....+...+...|-......++..+.-. +.-||..+   
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---  144 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---  144 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence            5677888888888888888765 222222           1122233344445444444455443322 23344332   


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038914          374 LFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG-YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG  452 (570)
Q Consensus       374 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  452 (570)
                      .+....-.|-++.+++++..+..... ..+...  +++-+.... .+++-..+.....+   .++..+|..++.+-...|
T Consensus       145 ~illlv~eglwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag  218 (1088)
T KOG4318|consen  145 AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG  218 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence            23333445667777777655432210 011111  233333222 23333333333332   588888999998888899


Q ss_pred             CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038914          453 RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNE  523 (570)
Q Consensus       453 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  523 (570)
                      +.+.|..++.+|.+.|++.+.+-|..|+.+   .++...++.+++.|.+.|+.|+..|+...+..+...|.
T Consensus       219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999999999999999988888888777765   77888888888899999999999998877777776544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=3e-09  Score=89.50  Aligned_cols=187  Identities=15%  Similarity=0.178  Sum_probs=139.7

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE  130 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  130 (570)
                      +..++.+|++++..-.++.|  .+......++.+|....++..|-..|+++...  .|....|...-.      .++.+.
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A------QSLY~A   91 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA------QSLYKA   91 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH------HHHHHh
Confidence            34578999999999888887  78888999999999999999999999999877  566655543322      223445


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVF--TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF  208 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  208 (570)
                      +.+..|+.+...|.+.   ++..  +...-.....+.+|+..+..+++.....+         +..+.+.......+.|+
T Consensus        92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllykegq  159 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYKEGQ  159 (459)
T ss_pred             cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeecccc
Confidence            7999999999887642   2222  12222223356799999999999876433         56677777888889999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038914          209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ  260 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  260 (570)
                      ++.|++-|+...+-+---....|+..+ +..+.|+++.|++...+++++|+.
T Consensus       160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence            999999999988764332455666544 455789999999999999988754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.29  E-value=2.9e-08  Score=93.93  Aligned_cols=273  Identities=11%  Similarity=-0.035  Sum_probs=153.7

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD  151 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (570)
                      ....+|..++..+...|+.+.+.+.+.+...... .++...... +.+.     .+...|++++|...++++.+.. +.+
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~-----~~~~~g~~~~A~~~~~~~l~~~-P~~   76 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEAL-----SAWIAGDLPKALALLEQLLDDY-PRD   76 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHH-----HHHHcCCHHHHHHHHHHHHHHC-CCc
Confidence            6677788888888888888887777777665522 122222211 1111     1233578888888888887763 223


Q ss_pred             cchHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          152 VFTYNTLINGLC----RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPN  227 (570)
Q Consensus       152 ~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  227 (570)
                      ..++.. ...+.    ..+....+.+.++.....       .+........+..++...|++++|++.+++..+.. +.+
T Consensus        77 ~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~  147 (355)
T cd05804          77 LLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDD  147 (355)
T ss_pred             HHHHHH-hHHHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC
Confidence            333332 22222    234455555555441111       12334455566777888888888888888888764 335


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhH-H
Q 038914          228 AVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ-PNV--VTFTVIMDELCKNGKMDGASRLLELMILRGV-KPDTSTY-N  302 (570)
Q Consensus       228 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~  302 (570)
                      ...+..+..++...|++++|...+++....... ++.  ..|..+...+...|++++|..+++++..... .+..... +
T Consensus       148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~  227 (355)
T cd05804         148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD  227 (355)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence            667778888888888888888888887765321 222  2344677788888888888888888754321 1111111 1


Q ss_pred             --HHHHHHHhcCCHHHHHHH--H-HHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          303 --TLIDGYCLTGKIDRAREL--F-VSMESNGC-MHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       303 --~l~~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                        .++..+...|..+.+.++  + ........ ............++...|+.+.|..++..+..
T Consensus       228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~  292 (355)
T cd05804         228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG  292 (355)
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              222333333433333322  1 11111100 00111112345566677777777777777655

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.29  E-value=1.6e-09  Score=102.23  Aligned_cols=206  Identities=18%  Similarity=0.151  Sum_probs=119.9

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNG-EIGVVCKPDTVT-YTTIIDGLCKKGFVDKAKELFLKMKDE-----N-  223 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-  223 (570)
                      ..+...+...|...|++++|+.+++...+.-. ..|. ..|.+.+ .+.+...|...+++.+|..+|+++...     | 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            35677789999999999999999999887510 0000 1344433 344778888888888888888887643     2 


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 038914          224 -INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-----GV-QPNV-VTFTVIMDELCKNGKMDGASRLLELMILR---  292 (570)
Q Consensus       224 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---  292 (570)
                       .+--..+++.|...|.+.|++++|...++...+.     +. .|.. ..++.+...+...+++++|..++....+.   
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence             1122456677777888888888887777766542     11 1111 23445555666677777777776655432   


Q ss_pred             CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          293 GVKPD----TSTYNTLIDGYCLTGKIDRARELFVSMESNG-------CMHDVVSYSILINGYCKTKDVEEGLNLYRK  358 (570)
Q Consensus       293 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  358 (570)
                      -+.++    ..+++.+...|...|++++|.++++.++...       ..-....++.+...|.+.+.+.+|.++|.+
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            01111    2345555555555666666655555544321       001122344445555555555555555544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.29  E-value=5e-09  Score=101.09  Aligned_cols=90  Identities=21%  Similarity=0.293  Sum_probs=75.8

Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          139 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLK  218 (570)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  218 (570)
                      ++..+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.-..      .+.+...++.++......++.+.+.     
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk-----   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK-----   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC-----
Confidence            4556667789999999999999999999999988 888888776      5667788899988888888877765     


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038914          219 MKDENINPNAVTYTSLICGFCYANDWNE  246 (570)
Q Consensus       219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  246 (570)
                            .|...+|..|..+|...||...
T Consensus        80 ------ep~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   80 ------EPLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             ------CCchhHHHHHHHHHHhccchHH
Confidence                  5688899999999999998765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.28  E-value=7.4e-08  Score=82.97  Aligned_cols=310  Identities=11%  Similarity=0.049  Sum_probs=182.6

Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh-hHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV-TYTTIID  201 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  201 (570)
                      +|..+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.=+.+.++        .+||-. +-..-..
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--------lKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--------LKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--------cCccHHHHHHHhch
Confidence            3444555678889999888887652 11223344455678888888888888888887        467633 3344566


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                      .+.+.|.+++|..-|+.++....  +..             ...++..-+..+.+      .......+..+...|+...
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~--s~~-------------~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~  173 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEP--SNG-------------LVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQN  173 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCC--Ccc-------------hhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhh
Confidence            78888999999999988887632  211             11111111111000      0111223334445566666


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                      |+.....+++.. +.|...+..-..+|...|++..|+.=++.+.+.. ..+...+-.+-..+...|+.+.++...++.++
T Consensus       174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            666666666542 3455556666666666666666666555554443 22444455555556666666666666666555


Q ss_pred             CCCCCChhh----HHH---H------HHHHhhcCCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHhcCCHHHHHHH
Q 038914          362 KGIRPTVVT----YHT---L------FLGLFEVHQVEHALKLFDEMRRNHVAANT---YIYTTFIDGLCKNGYIVKAVEL  425 (570)
Q Consensus       362 ~~~~~~~~~----~~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~  425 (570)
                      .  .||...    |..   +      +......++|.++++..+...+.......   ..+..+-.++...+++.+|++.
T Consensus       252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq  329 (504)
T KOG0624|consen  252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ  329 (504)
T ss_pred             c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence            3  333221    111   1      12233456777777777777665433112   2344445566667788888888


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                      -.++.... +.|+.++..-..+|.-...++.|+.-|+.+.+.
T Consensus       330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            77777654 445777777778888888888888888887774

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.28  E-value=1.1e-08  Score=92.78  Aligned_cols=119  Identities=11%  Similarity=-0.019  Sum_probs=57.8

Q ss_pred             CChhHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914          277 GKMDGASRLLELMILRG-VKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGL  353 (570)
Q Consensus       277 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  353 (570)
                      +..+.++.-+.+++... ..|+  ...+..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            44455555555555321 1111  2234444455555555555555555555543 224455555555555555555555


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914          354 NLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN  397 (570)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  397 (570)
                      ..|++.++.... +..++..+...+...|++++|...++...+.
T Consensus       119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            555555543211 2334444444555555555555555555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.26  E-value=5.5e-08  Score=95.30  Aligned_cols=197  Identities=13%  Similarity=0.040  Sum_probs=135.5

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914           42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL  121 (570)
Q Consensus        42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  121 (570)
                      +...|..+..--+...|.+-|+++.+.++  .+..++...+..|.+..+++.|..+.-...+.  .|-    ..-...+.
T Consensus       495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a----~~~k~nW~  566 (1238)
T KOG1127|consen  495 FAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQK--APA----FACKENWV  566 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chH----HHHHhhhh
Confidence            33344333333366799999999999998  78899999999999999999999984443332  111    11122333


Q ss_pred             hcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHH
Q 038914          122 QNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTII  200 (570)
Q Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  200 (570)
                      ..|-.+...+++..|+..|+...+.. +.|...|..++.+|...|++..|+.+|.++...+        |+ ...-.-..
T Consensus       567 ~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A  637 (1238)
T KOG1127|consen  567 QRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEA  637 (1238)
T ss_pred             hccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHH
Confidence            36677788899999999999998875 3478899999999999999999999999998854        43 22222233


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          201 DGLCKKGFVDKAKELFLKMKDE------NINPNAVTYTSLICGFCYANDWNEAKHLFIEMM  255 (570)
Q Consensus       201 ~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  255 (570)
                      ..-+..|.+.+|+..+..+...      +..--..++..+...+...|-...+.+++++.+
T Consensus       638 ~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi  698 (1238)
T KOG1127|consen  638 VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI  698 (1238)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            3455679999999999887643      111123344444444455555555555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=5.2e-07  Score=86.84  Aligned_cols=316  Identities=16%  Similarity=0.141  Sum_probs=194.6

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC--------C-CCCCHhh-HHHHHH
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST--------G-LFPDLYA-YNILIN  118 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-~~~~~~~-~~~~l~  118 (570)
                      ++.-|+.|.|.+..+-+       .+...|..++..+.+.++.+-|.-.+..|...        . -.++... -..++ 
T Consensus       738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL-  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL-  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH-
Confidence            45789999998888777       56678999999999988888776555444221        0 0122111 11111 


Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                       ...       .|.+++|..+|.+..+.         ..|-..|...|.+++|.++-+.--+..         --.+|..
T Consensus       810 -Aie-------LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~  863 (1416)
T KOG3617|consen  810 -AIE-------LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYN  863 (1416)
T ss_pred             -HHH-------HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHH
Confidence             122       36899999999988754         244456677899999998877543322         2457777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC----------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDE----------N---------INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV  259 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  259 (570)
                      ....+-..++.+.|++.|++....          .         -..|...|.-....+-..|+.+.|+.+|.....   
T Consensus       864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---  940 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---  940 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence            778888888899998888764221          0         011333444445555567788888888776543   


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038914          260 QPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSIL  339 (570)
Q Consensus       260 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  339 (570)
                            |..+++..|-+|+.++|-++-++-      -|......+.+.|-..|++.+|...|.+...         +...
T Consensus       941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnA  999 (1416)
T KOG3617|consen  941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNA  999 (1416)
T ss_pred             ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHH
Confidence                  556777777888888888876653      2666777788888889999998888876543         2222


Q ss_pred             HHHHHhc-------------C--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH--------H-
Q 038914          340 INGYCKT-------------K--DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEM--------R-  395 (570)
Q Consensus       340 ~~~~~~~-------------~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~-  395 (570)
                      |+.|-.+             +  +.-.|-.+|++.   |.     -+...+..|-+.|.+.+|+++--.-        + 
T Consensus      1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred             HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence            2222211             1  122222333321   10     1122333455556665555442111        1 


Q ss_pred             -hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          396 -RNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR  430 (570)
Q Consensus       396 -~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  430 (570)
                       ......|+..++.....++...++++|..++-...
T Consensus      1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred             HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             12234566777777777777888888877776554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.22  E-value=7.3e-08  Score=91.18  Aligned_cols=296  Identities=12%  Similarity=0.029  Sum_probs=184.1

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCcchh
Q 038914           52 TITPNDALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-AYNILINCFLQNGSSLCV  129 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~  129 (570)
                      .|++++|...+....+..+...+ .......+..+...|++++|.+.+++++..  .|+.. .+.. ...+...|   ..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~---~~   92 (355)
T cd05804          19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLG---DF   92 (355)
T ss_pred             cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhc---cc
Confidence            45788888888888777662222 234445566778899999999999999987  45433 2221 11122222   11


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914          130 ESRIMEAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF  208 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  208 (570)
                      .+..+.+.+.++....  ..|+ ......+...+...|++++|+..+++..+..       +.+...+..+..++...|+
T Consensus        93 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          93 SGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             ccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCC
Confidence            3455566665554211  1222 2344456677889999999999999999975       4567788999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHhcCChhH
Q 038914          209 VDKAKELFLKMKDENI-NPNA--VTYTSLICGFCYANDWNEAKHLFIEMMDQGV-QPNVVTF-T--VIMDELCKNGKMDG  281 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~  281 (570)
                      +++|++.+++...... .++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|....
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            9999999999887532 1232  3456788899999999999999999865422 1111111 1  22333444554444


Q ss_pred             HHHH--HHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C-----CHhhHHHHHHHHHhcCCH
Q 038914          282 ASRL--LELMILRGVKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNGCM---H-----DVVSYSILINGYCKTKDV  349 (570)
Q Consensus       282 a~~~--~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~~~~  349 (570)
                      +.++  +...........  .........++...|+.+.|..+++.+......   .     .........-++...|+.
T Consensus       244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~  323 (355)
T cd05804         244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY  323 (355)
T ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence            4433  211111111111  122224567778899999999999887663211   0     111122223345577888


Q ss_pred             HHHHHHHHHHHhC
Q 038914          350 EEGLNLYRKMLSK  362 (570)
Q Consensus       350 ~~A~~~~~~~~~~  362 (570)
                      ++|.+.+......
T Consensus       324 ~~A~~~L~~al~~  336 (355)
T cd05804         324 ATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888776653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.19  E-value=2.8e-07  Score=87.56  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCH
Q 038914          305 IDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQV  384 (570)
Q Consensus       305 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  384 (570)
                      +.+.....++.+|+.+++.+....  .-..-|..+..-|...|+++.|.++|.+.         ..+...+..|.+.|+|
T Consensus       739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            344455566666666666665542  22333555666667777777777766532         1234455566677777


Q ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914          385 EHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELF  426 (570)
Q Consensus       385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  426 (570)
                      ++|.++-.+...  .......|..-..-+-..|++.+|.+++
T Consensus       808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            777666555432  2222333433344444555555555544

>PF13041 PPR_2: PPR repeat family

Probab=99.16  E-value=1.2e-10  Score=73.21  Aligned_cols=48  Identities=40%  Similarity=0.827  Sum_probs=22.0

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914          471 ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF  518 (570)
Q Consensus       471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  518 (570)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL   48 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444

>PF13041 PPR_2: PPR repeat family

Probab=99.16  E-value=1.2e-10  Score=73.15  Aligned_cols=49  Identities=49%  Similarity=0.916  Sum_probs=30.3

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          191 PDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFC  239 (570)
Q Consensus       191 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  239 (570)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4556666666666666666666666666666666666666666666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=6.9e-09  Score=95.64  Aligned_cols=223  Identities=15%  Similarity=0.058  Sum_probs=158.9

Q ss_pred             CCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914           48 GDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL  127 (570)
Q Consensus        48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  127 (570)
                      .+++.|++.+|.-.|+.+++.+|  .+..+|..|+.....+++-..|+..++++++.  .|+.......+..      .|
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAV------Sy  363 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAV------SY  363 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHH------HH
Confidence            34678899999999999999999  89999999999999999999999999999987  6765443333332      24


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCCcchHHHHH---------HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          128 CVESRIMEAAALFTKLRVFGCEPDVFTYNTLI---------NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                      ..+|.-.+|++.++..+...++   ..|....         ..+.....+....++|-++....+     ..+|...+..
T Consensus       364 tNeg~q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~  435 (579)
T KOG1125|consen  364 TNEGLQNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSG  435 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhh
Confidence            4467888999999988764311   0110000         011122233444555555555432     3467788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcC
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-VVTFTVIMDELCKNG  277 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  277 (570)
                      |...|.-.|++++|++.|+.++... +-|...||.|...++...+.++|+..|.+.++.  +|+ +.+...|.-.|...|
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG  512 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLG  512 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhh
Confidence            8888888888888888888888753 236778888888888888888888888888875  444 344555666788888


Q ss_pred             ChhHHHHHHHHHHH
Q 038914          278 KMDGASRLLELMIL  291 (570)
Q Consensus       278 ~~~~a~~~~~~~~~  291 (570)
                      .+++|.+.|-.++.
T Consensus       513 ~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  513 AYKEAVKHLLEALS  526 (579)
T ss_pred             hHHHHHHHHHHHHH
Confidence            88888888766654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.13  E-value=1.2e-06  Score=94.16  Aligned_cols=338  Identities=12%  Similarity=-0.004  Sum_probs=214.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--hhhHHHHHH
Q 038914          200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV------QPN--VVTFTVIMD  271 (570)
Q Consensus       200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~  271 (570)
                      .......|+++.+..+++.+.......+..........+...|+++++..++......-.      .+.  ......+..
T Consensus       381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~  460 (903)
T PRK04841        381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ  460 (903)
T ss_pred             HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence            344556678887777776653211111233334455566788999999999987754311      111  112223345


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHhhHHHHHHH
Q 038914          272 ELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCLTGKIDRARELFVSMESNGC---MH--DVVSYSILING  342 (570)
Q Consensus       272 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~  342 (570)
                      .+...|++++|...+++........+.    ...+.+...+...|++++|...+++......   .+  ...+...+...
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            567899999999999998764111121    2345566677889999999999988764311   11  12345566778


Q ss_pred             HHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC--CCc--CHHHHHHHHH
Q 038914          343 YCKTKDVEEGLNLYRKMLSK----GIR--P-TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH--VAA--NTYIYTTFID  411 (570)
Q Consensus       343 ~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~  411 (570)
                      +...|+++.|...+++....    +..  + ....+..+...+...|++++|...+.......  ..+  ....+..+..
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            88999999999998887652    211  1 12233445556777899999999988775421  111  2334444566


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCC-ChhhH-----HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh---hhHHHHHHH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYEL-NIVSY-----NCLIDGLCKHGRLEIAWELFSSLPRVGLMADV---VTYNIMIHG  482 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~  482 (570)
                      .+...|+++.|...++.+....... ....+     ...+..+...|+.+.|...+............   ..+..+..+
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~  700 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA  700 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence            7788999999999998875431111 11111     11224445689999999998776542111111   114567778


Q ss_pred             HHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          483 LCNDGQMDKAHGLFLDMEAK----GLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       483 ~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      +...|++++|...++++...    |...+ ..+...+..++.+.|+.++|...+.+..+.
T Consensus       701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88999999999999987653    32222 235566777889999999999999999854

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=3.2e-07  Score=77.57  Aligned_cols=353  Identities=15%  Similarity=0.151  Sum_probs=213.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 038914           78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNT  157 (570)
Q Consensus        78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  157 (570)
                      +...+..+.+..++..|++++..-.+.  .|....-.+++..|      |....++..|...|+++-..  .|...-|..
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyC------YY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl   82 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYC------YYRLQEFALAAECYEQLGQL--HPELEQYRL   82 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHH------HHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence            445556667888999999998888776  45344434444444      22346899999999998765  344444433


Q ss_pred             -HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914          158 -LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC  236 (570)
Q Consensus       158 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  236 (570)
                       -...+.+.+.+.+|+.+...+....       .....+...-.......+++..+..+.++....|   +..+.+....
T Consensus        83 Y~AQSLY~A~i~ADALrV~~~~~D~~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC  152 (459)
T KOG4340|consen   83 YQAQSLYKACIYADALRVAFLLLDNP-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC  152 (459)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence             3456678899999999988876521       0011222222233446788888888888887543   5556666677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcC
Q 038914          237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTST----YNTLIDGYCLTG  312 (570)
Q Consensus       237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~  312 (570)
                      ...+.|++++|.+-|+...+.+---....|+..+ +..+.|++..|++...+++.+|+...+..    ....+.+- ..|
T Consensus       153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svg  230 (459)
T KOG4340|consen  153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVG  230 (459)
T ss_pred             eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-ccc
Confidence            7788999999999999888764332345666544 55677899999999999988876532211    00011100 001


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914          313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKG-IRPTVVTYHTLFLGLFEVHQVEHALKLF  391 (570)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~  391 (570)
                      +.   ..+.    ..+   -+..+|.-...+.+.++++.|.+.+..|..+. ...|+.|...+...- ..+++.+...-+
T Consensus       231 Nt---~~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL  299 (459)
T KOG4340|consen  231 NT---LVLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL  299 (459)
T ss_pred             ch---HHHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence            10   0000    000   12345555666788899999999888876542 234666766654332 234455555556


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHhhh
Q 038914          392 DEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKY-ELNIVSYNCLIDGLC-KHGRLEIAWELFSSLP  465 (570)
Q Consensus       392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~  465 (570)
                      .-+....+ -...+|..++-.||+..-++.|-.++-+-..... -.+...|+ +++++. ..-..++|++-++.+.
T Consensus       300 qFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  300 QFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence            66666543 4467788888889998888888877754221111 12333343 334443 3446677776666544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=6.4e-06  Score=79.67  Aligned_cols=172  Identities=17%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038914           84 CLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC  163 (570)
Q Consensus        84 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (570)
                      .....|..++|..+|.+..+..          +++-+      |..+|.+++|.++-+.--+.  . -..+|.....-+.
T Consensus       809 LAieLgMlEeA~~lYr~ckR~D----------LlNKl------yQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Le  869 (1416)
T KOG3617|consen  809 LAIELGMLEEALILYRQCKRYD----------LLNKL------YQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLE  869 (1416)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHH----------HHHHH------HHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHH
Confidence            3345677777777777666431          11211      22245777776655532211  1 1134445555555


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCC-------------cccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          164 RTGHTIVALNLFEEMANGNGEIG-------------VVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       164 ~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      ..+|.+.|++.|++......+..             +....|...|.-....+-..|+.+.|+.+|....+         
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------  940 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------  940 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence            56666666666665321100000             00011233333444444556777777777765544         


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      |.++++..|-+|+.++|-++-++-      -|......+.+.|-..|++.+|..+|-+.
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            445556666666666666655432      14445555666666666666666666443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.10  E-value=1.4e-06  Score=93.54  Aligned_cols=341  Identities=9%  Similarity=-0.074  Sum_probs=214.1

Q ss_pred             chhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC--hhhHHHHHHHHH
Q 038914          127 LCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD--TVTYTTIIDGLC  204 (570)
Q Consensus       127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~  204 (570)
                      ....|+++.+..+++.+.......+..........+...|++++|..+++.+...-...+....+.  ......+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            344578888777776653211112333334455556678999999999988765321100000111  222333455667


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHh
Q 038914          205 KKGFVDKAKELFLKMKDENINPNA----VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ-----PNVVTFTVIMDELCK  275 (570)
Q Consensus       205 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~  275 (570)
                      ..|++++|...+++........+.    ...+.+...+...|++++|...+++.......     ....+...+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            899999999999988763111121    24455667788899999999999887653111     112345566778889


Q ss_pred             cCChhHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHH
Q 038914          276 NGKMDGASRLLELMILR----GVK--P-DTSTYNTLIDGYCLTGKIDRARELFVSMESN----GCMHDVVSYSILINGYC  344 (570)
Q Consensus       276 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~  344 (570)
                      .|++++|...+++....    +..  + ....+..+...+...|++++|...+++....    +.......+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999998887653    211  1 1233445566777889999999998887553    11112334555667788


Q ss_pred             hcCCHHHHHHHHHHHHhCC--CCCChh--hH--HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHh
Q 038914          345 KTKDVEEGLNLYRKMLSKG--IRPTVV--TY--HTLFLGLFEVHQVEHALKLFDEMRRNHVAANT---YIYTTFIDGLCK  415 (570)
Q Consensus       345 ~~~~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~  415 (570)
                      ..|+++.|...+..+....  ......  ..  ...+..+...|+.+.|..++............   .....+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            8999999999998875521  110110  10  11123345578999999888775542211111   113456677888


Q ss_pred             cCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          416 NGYIVKAVELFRTLRIL----KYEL-NIVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                      .|++++|...++++...    +... ...+...+..++...|+.++|...+.++.+.
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999887643    2111 1245666777888999999999999998874

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=3.1e-08  Score=91.46  Aligned_cols=216  Identities=16%  Similarity=0.125  Sum_probs=95.7

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038914          273 LCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEG  352 (570)
Q Consensus       273 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  352 (570)
                      +.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence            345555555555555555542 2244455555555555555555555555555553 23444555555555555555555


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHH-----------HHHhhcCCHHHHHHHHHHHH-hCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914          353 LNLYRKMLSKGIRPTVVTYHTLF-----------LGLFEVHQVEHALKLFDEMR-RNHVAANTYIYTTFIDGLCKNGYIV  420 (570)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~  420 (570)
                      ...|++.+...++     |..+.           ..+.......+..++|-++. ..+..+|+.+...|.-.|.-.|+++
T Consensus       373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            5555555442110     00000           01111111222223332222 2222234444444444444444445


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 038914          421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLD  498 (570)
Q Consensus       421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~  498 (570)
                      +|...|+.++... |-|..+||.|...++...+.++|+..|.++++  +.|+- .+...|+-+|...|.+.+|.+.|-.
T Consensus       448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            5544444444433 33444444444444444444444444444444  23332 2333444444444444444444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.08  E-value=8.2e-07  Score=84.49  Aligned_cols=191  Identities=16%  Similarity=0.180  Sum_probs=125.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038914          342 GYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVK  421 (570)
Q Consensus       342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  421 (570)
                      -+...|+++.|+..|-+..         .....+.+......|.+|+.+++.+.....  -..-|..+...|...|+++.
T Consensus       715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~  783 (1636)
T KOG3616|consen  715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI  783 (1636)
T ss_pred             HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence            3444556666655554322         234455566677788888888887776532  33456677788888888888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          422 AVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      |.++|-+.-         .++..+.+|.+.|+|+.|.++-.+...  .......|..-..-+-.+|++.+|.+++-... 
T Consensus       784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-  851 (1636)
T KOG3616|consen  784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-  851 (1636)
T ss_pred             HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence            888875432         244557788888888888888777654  23344556666666777888888888764443 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhh
Q 038914          502 KGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQF  566 (570)
Q Consensus       502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  566 (570)
                         .|+.     .+..|-+.|..+..+++.++-..   ..-..|...+..-|...|++.+|-+.|
T Consensus       852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~f  905 (1636)
T KOG3616|consen  852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHF  905 (1636)
T ss_pred             ---CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHH
Confidence               2443     34567788888888888777641   112456777778888888888776665

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.06  E-value=1.3e-08  Score=90.81  Aligned_cols=150  Identities=18%  Similarity=0.109  Sum_probs=73.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----c
Q 038914          341 NGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----N  416 (570)
Q Consensus       341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  416 (570)
                      .++...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+.+   +..+...++.++..    .
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence            3444555666665555421      244445555555566666666666666655432   12222223332221    2


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHH
Q 038914          417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM-DKAHGL  495 (570)
Q Consensus       417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~  495 (570)
                      +.+.+|..+|+++... .++++.+.+.++.+....|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.++
T Consensus       181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence            2456666666665433 24555556666666666666666666666655432 23445555555555555555 444555


Q ss_pred             HHHHHH
Q 038914          496 FLDMEA  501 (570)
Q Consensus       496 ~~~~~~  501 (570)
                      +.++..
T Consensus       259 l~qL~~  264 (290)
T PF04733_consen  259 LSQLKQ  264 (290)
T ss_dssp             HHHCHH
T ss_pred             HHHHHH
Confidence            555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.05  E-value=2.6e-05  Score=76.53  Aligned_cols=225  Identities=12%  Similarity=0.085  Sum_probs=151.0

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      +..+++..|++.....++..|  ....+-..-+-.+.+.|+.++|..+++.....+.. |..+...+-..|.+.      
T Consensus        20 ld~~qfkkal~~~~kllkk~P--n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~------   90 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHP--NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL------   90 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH------
Confidence            346689999999999999988  44444444455678999999999998888766543 777777777776665      


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC-C
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG-F  208 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~  208 (570)
                       +.+++|..+|++....  .|+......+..+|.+.+.+.+-.++--++.+.       .+.+...+=+++..+.+.- .
T Consensus        91 -~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~  160 (932)
T KOG2053|consen   91 -GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFS  160 (932)
T ss_pred             -hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccC
Confidence             5999999999999876  556666667778888887776544444444332       2334444444444444321 1


Q ss_pred             ---------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcC
Q 038914          209 ---------VDKAKELFLKMKDEN-INPNAVTYTSLICGFCYANDWNEAKHLFI-EMMDQGVQPNVVTFTVIMDELCKNG  277 (570)
Q Consensus       209 ---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g  277 (570)
                               ..-|...++.+.+.+ .--+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...+
T Consensus       161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~  240 (932)
T KOG2053|consen  161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN  240 (932)
T ss_pred             CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence                     234566677766654 22222333333455667899999999993 3333323334444456677788899


Q ss_pred             ChhHHHHHHHHHHHCC
Q 038914          278 KMDGASRLLELMILRG  293 (570)
Q Consensus       278 ~~~~a~~~~~~~~~~~  293 (570)
                      ++.+..++..++...|
T Consensus       241 ~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  241 RWQELFELSSRLLEKG  256 (932)
T ss_pred             ChHHHHHHHHHHHHhC
Confidence            9999999999999875

>PLN02789 farnesyltranstransferase

Probab=99.01  E-value=8e-07  Score=80.46  Aligned_cols=207  Identities=12%  Similarity=0.099  Sum_probs=146.8

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      ..++.++|+..++.+++.+|  .+..+|+....++...| .+++++..+++++..... +...+...-..+...|     
T Consensus        49 ~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~-----  120 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG-----  120 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC-----
Confidence            35588999999999999999  88889999998888888 689999999999987432 2223433322333333     


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc---
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK---  206 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  206 (570)
                      ....++++..++++++.. +.+..+|+...-++...|+++++++.++++++.+       +.+..+|+....++.+.   
T Consensus       121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFVITRSPLL  192 (320)
T ss_pred             chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHHHHhcccc
Confidence            112367899999998875 3478899999999999999999999999999986       45677887777666554   


Q ss_pred             CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038914          207 GFV----DKAKELFLKMKDENINPNAVTYTSLICGFCYA----NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK  275 (570)
Q Consensus       207 g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (570)
                      |..    ++.++...+++... +-|...|+-+...+...    +...+|...+.+....++ .+......|+..|+.
T Consensus       193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence            222    45666666666653 34677777777777663    334557777777665432 245556666666664

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.00  E-value=3.5e-08  Score=87.99  Aligned_cols=255  Identities=12%  Similarity=0.090  Sum_probs=164.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914          271 DELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVE  350 (570)
Q Consensus       271 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  350 (570)
                      +-+.-.|++..++.-.+ ........+......+.+++...|+++.++   ..+.... .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            44555677777776555 222221222334555677888888876544   3333333 455555555555554445556


Q ss_pred             HHHHHHHHHHhCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          351 EGLNLYRKMLSKGIRPTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL  429 (570)
Q Consensus       351 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  429 (570)
                      .++.-++........+.. .........+...|++++|++++...      .+.......+.+|.+.++++.|.+.++.+
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            666666555444333222 22233334566789999999888642      35667777889999999999999999999


Q ss_pred             HHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 038914          430 RILKYELNIVSYNCLIDGLCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE  505 (570)
Q Consensus       430 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  505 (570)
                      .+..  .| .+...++.++..    .+.+.+|.-+|+++.+. ..++..+.+.++.++...|++++|.+++.+....+ +
T Consensus       158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~  232 (290)
T PF04733_consen  158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P  232 (290)
T ss_dssp             HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred             HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence            8653  33 444455555543    33689999999998775 56788899999999999999999999999988753 3


Q ss_pred             CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCH
Q 038914          506 PNFVIFNTLMLGFIRNNET-SKVIELLHRMDMRNVMPDA  543 (570)
Q Consensus       506 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~  543 (570)
                      -+..++..++.+....|+. +.+.+++.++...  .|+.
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h  269 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH  269 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence            3677888888888888888 6788888888853  4543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=3e-05  Score=76.94  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914          298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG  377 (570)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  377 (570)
                      +.+|..+..+-.+.|...+|++-|-+.      .|+..|..++....+.|.+++-.+.+....+..-.|...  ..++-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence            345666666666666666665544332      244556666666666666666666666665553333333  455556


Q ss_pred             HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038914          378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFR  427 (570)
Q Consensus       378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  427 (570)
                      |++.++..+..+++       ..|+......+..-|...+.++.|.-+|.
T Consensus      1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred             HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence            66666655544332       13444445555555555555555544443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=4.2e-05  Score=75.97  Aligned_cols=114  Identities=16%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914          229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY  308 (570)
Q Consensus       229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  308 (570)
                      ..|..+..+-.+.|...+|++-|-+.      .|+..|..++....+.|.+++-.+++....+..-.|.+  -..|+-+|
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence            44555555555555555555444321      13444555555555555555555555555444333322  23445555


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR  357 (570)
Q Consensus       309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  357 (570)
                      ++.++..+.++++.       .|+......+..-|...+.++.|.-+|.
T Consensus      1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred             HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence            55555444433221       1344444444444455555554444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.96  E-value=5.7e-07  Score=85.64  Aligned_cols=215  Identities=15%  Similarity=0.083  Sum_probs=163.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038914          300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF  379 (570)
Q Consensus       300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  379 (570)
                      .-..+...+...|-...|..+++++.         .|...+.+|...|+..+|..+..+..+.  +|++..|..++....
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence            33456677788888888888887654         3667788888889888888888887773  678888888887777


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914          380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE  459 (570)
Q Consensus       380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  459 (570)
                      ...-+++|.++.+.....       .-..+.......++++++.+.|+...+.+ +....+|-.+..+..+.+++..|.+
T Consensus       469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence            777778888877665432       11222222344688888888888877765 5667788888888888889999998


Q ss_pred             HHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          460 LFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       460 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      .|......  .|+. ..||++..+|.+.|+-.+|...++++.+.+ .-+...|...+....+-|.+++|++.++++.+
T Consensus       541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            88888773  5554 679999999999999999999998888876 45667777777778888999999998888873

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.94  E-value=4e-07  Score=86.65  Aligned_cols=217  Identities=13%  Similarity=0.086  Sum_probs=180.3

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914          264 VTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGY  343 (570)
Q Consensus       264 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  343 (570)
                      ..-..+...+...|-..+|..+++++.         .+...+.+|...|+..+|..+..+..+.  +|+...|..++.+.
T Consensus       399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL  467 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence            334557778889999999999998874         4566788999999999999999888874  68999999999888


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038914          344 CKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAV  423 (570)
Q Consensus       344 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  423 (570)
                      ....-+++|.++.+.....       +-..+.....+.++++++.+.|+...+.. +....+|....-+..+.+++..|.
T Consensus       468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence            8877889999988865442       22333333445799999999998887764 556778888888889999999999


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          424 ELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +.|....... +.+...||.+..+|.+.|+-.+|...+++..+.+ ..+...|.+.+....+.|.+++|++.+.++..
T Consensus       540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            9999988765 5667899999999999999999999999999976 55667888888899999999999999999875

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.93  E-value=4.5e-05  Score=70.57  Aligned_cols=456  Identities=12%  Similarity=0.146  Sum_probs=233.6

Q ss_pred             HHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHH
Q 038914           63 DYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFT  141 (570)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~  141 (570)
                      +.-++.+|  .|..+|+.|++-+..+ -++++++.|+++...  .|.. ..|..-+..-..       ..+++...++|.
T Consensus        10 ~~rie~nP--~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~-------skdfe~VEkLF~   77 (656)
T KOG1914|consen   10 RERIEENP--YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELA-------SKDFESVEKLFS   77 (656)
T ss_pred             HHHHhcCC--ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHH-------hhhHHHHHHHHH
Confidence            45566777  8999999999987666 999999999999976  5643 445555554433       359999999999


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHh-cCChhH----HHHHHHHHHhCCCCCCcccCCChhhHHHHHHH---------HHhcC
Q 038914          142 KLRVFGCEPDVFTYNTLINGLCR-TGHTIV----ALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG---------LCKKG  207 (570)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~g  207 (570)
                      +.+..  ..+...|...+.--.+ .|+...    ..+.|+-+....+   . -......|+..+..         |..+.
T Consensus        78 RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig---~-di~s~siW~eYi~FL~~vea~gk~ee~Q  151 (656)
T KOG1914|consen   78 RCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG---M-DIKSYSIWDEYINFLEGVEAVGKYEENQ  151 (656)
T ss_pred             HHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc---c-CcccchhHHHHHHHHHcccccccHHHHH
Confidence            99876  3456677766653322 233322    3344444444321   0 01112234433332         23344


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHH------HHHHHHH-------hcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHH
Q 038914          208 FVDKAKELFLKMKDENINPNAVTYT------SLICGFC-------YANDWNEAKHLFIEMMD--QGVQPNVVTFTVIMDE  272 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~  272 (570)
                      +++...++++++...-+.-=...|+      .=|+...       +...+..|.++++++..  .|...+..+       
T Consensus       152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------  224 (656)
T KOG1914|consen  152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------  224 (656)
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------
Confidence            5666677777776532110011111      1111100       11233344444444332  122111111       


Q ss_pred             HHhcCChhH--HHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHhhH-----HHH
Q 038914          273 LCKNGKMDG--ASRLLELMILR----GVK-PDTSTYNTLIDGYCLTGKIDRARELFVSM-ESNGCMHDVVSY-----SIL  339 (570)
Q Consensus       273 ~~~~g~~~~--a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~-----~~l  339 (570)
                      .-..|-.++  ..+++...++.    ++. .+.....            ....-++++. .-.+..|+....     ...
T Consensus       225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~  292 (656)
T KOG1914|consen  225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI  292 (656)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            000111111  11112111111    110 0000000            0011111111 111111111100     000


Q ss_pred             HHHHHhcCC-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHh---hcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 038914          340 INGYCKTKD-------VEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF---EVHQVEHALKLFDEMRRNHVAANTYIYTTF  409 (570)
Q Consensus       340 ~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  409 (570)
                      .+.+...|+       .+++..+++..+..-..-+...|..+...--   ...+.+....+++.+.......-..+|...
T Consensus       293 s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~  372 (656)
T KOG1914|consen  293 SDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQY  372 (656)
T ss_pred             hHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHH
Confidence            112223333       3455566665554322222222322222111   112355556666666543222234466677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcC
Q 038914          410 IDGLCKNGYIVKAVELFRTLRILKYEL-NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDG  487 (570)
Q Consensus       410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g  487 (570)
                      ++.-.+..-+..|..+|.++.+.+..+ ++.+.++++.-|+ .++..-|.++|+--+++  -+|. .--...+.-+...+
T Consensus       373 mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lN  449 (656)
T KOG1914|consen  373 MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLN  449 (656)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhC
Confidence            777777788888899998888766555 5666677776554 67888899998876664  2343 33345666777788


Q ss_pred             ChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHccCc
Q 038914          488 QMDKAHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMR-N--VMPDASTLSIVVDLLVKNEI  558 (570)
Q Consensus       488 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~  558 (570)
                      +-..+..+|++.+..++.|+  ..+|..++.--..-|+...++++-+++... .  ..+.-.....+++-|.=.+.
T Consensus       450 dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~  525 (656)
T KOG1914|consen  450 DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL  525 (656)
T ss_pred             cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence            88888999999888766655  468888888888889998888888887632 1  22222344444444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=1.1e-07  Score=83.95  Aligned_cols=186  Identities=11%  Similarity=0.002  Sum_probs=108.3

Q ss_pred             hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh----HHHHH
Q 038914           43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA----YNILI  117 (570)
Q Consensus        43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l  117 (570)
                      ...|......|++++|+..|+.++...|..+. ..++..++.++...|++++|+..|+++++..  |+...    +..+-
T Consensus        37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~g  114 (235)
T TIGR03302        37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYLRG  114 (235)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHHHH
Confidence            33455566788999999999999999883322 3578899999999999999999999999874  43222    22222


Q ss_pred             HHHHhc-CCcchhhCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhh
Q 038914          118 NCFLQN-GSSLCVESRIMEAAALFTKLRVFGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVT  195 (570)
Q Consensus       118 ~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  195 (570)
                      .++... +..+...|++++|.+.|+++....  |+. ..+..+.....    ..       ...             ...
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~-------~~~-------------~~~  168 (235)
T TIGR03302       115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR-------NRL-------------AGK  168 (235)
T ss_pred             HHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH-------HHH-------------HHH
Confidence            222221 223334578999999999998763  333 22221111100    00       000             001


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914          196 YTTIIDGLCKKGFVDKAKELFLKMKDE--NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       196 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  256 (570)
                      ...+...+.+.|++++|...++...+.  +.+.....+..+..++...|++++|..+++.+..
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            123344455556666665555555432  1222345555555566666666666655555544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.88  E-value=4.4e-06  Score=75.73  Aligned_cols=208  Identities=12%  Similarity=0.019  Sum_probs=137.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          161 GLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG-FVDKAKELFLKMKDENINPNAVTYTSLICGFC  239 (570)
Q Consensus       161 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  239 (570)
                      ++...++.++|+.+.+++.+.+       +.+..+|+....++...| .++++++.++++...+.+ +..+|+.....+.
T Consensus        46 ~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~  117 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE  117 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence            3445577888888888888865       445667777777777777 578888888888876443 6667776665565


Q ss_pred             hcCCH--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CC-
Q 038914          240 YANDW--NEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLT---GK-  313 (570)
Q Consensus       240 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-  313 (570)
                      +.|+.  ++++.+++++++...+ |..+|+....++...|+++++++.++++++.+.. +...|+.....+...   |. 
T Consensus       118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence            66653  6678888888876443 7778888888888888888888888888887533 555565555544433   22 


Q ss_pred             ---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh
Q 038914          314 ---IDRARELFVSMESNGCMHDVVSYSILINGYCKT----KDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE  380 (570)
Q Consensus       314 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  380 (570)
                         .+.......+++... +.+...|+.+..++...    +...+|.+.+.+....++ .+...+..++..|..
T Consensus       196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence               245566665666554 44677777777777662    234556666666555322 244555555555543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.88  E-value=2.1e-06  Score=87.67  Aligned_cols=222  Identities=11%  Similarity=0.031  Sum_probs=116.6

Q ss_pred             HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCCHHHHH
Q 038914           59 LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESRIMEAA  137 (570)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~A~  137 (570)
                      ..-|++.+..+|  .+...|...+......++.++|++++++++.. +.+ ...--..+.-+|.+.   ...-|.-+...
T Consensus      1444 aeDferlvrssP--NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNl---En~yG~eesl~ 1517 (1710)
T KOG1070|consen 1444 AEDFERLVRSSP--NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNL---ENAYGTEESLK 1517 (1710)
T ss_pred             HHHHHHHHhcCC--CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhH---HHhhCcHHHHH
Confidence            345666666666  66777888888888888888888888888764 111 111111111111111   01113445555


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          138 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL  217 (570)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  217 (570)
                      ++|+++.+..  ..-.+|..|...|.+.+.+++|.++|+.|.+.-       ......|...+..+.++++-+.|..++.
T Consensus      1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred             HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence            5555555431  112335555555666666666666666665542       3345556666666666666666666665


Q ss_pred             HHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914          218 KMKDENIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP  296 (570)
Q Consensus       218 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  296 (570)
                      +..+.-.+ -........+..-.+.|+.+.+..+|+..+...++ -...|+..+..-.+.|+.+.+..+|++++..++.+
T Consensus      1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            55543111 02223333344444555555555555555554222 34455555555555555555555555555554433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.88  E-value=2.2e-06  Score=87.43  Aligned_cols=203  Identities=12%  Similarity=0.044  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914          300 TYNTLIDGYCLTGKIDRARELFVSMESN-GCM---HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF  375 (570)
Q Consensus       300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  375 (570)
                      .|...|......++.+.|.++.++++.. ++.   --...|.++++.-..-|.-+...++|+++.+.  ......|..|.
T Consensus      1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence            3444444444444444444444444332 000   01123444444444444444444555544442  11122344444


Q ss_pred             HHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 038914          376 LGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LNIVSYNCLIDGLCKHGRL  454 (570)
Q Consensus       376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~  454 (570)
                      ..|.+.++.++|.++++.|.+.- .....+|...+..+.+.++-+.|..++.++.+.-.. -........+..-.+.|+.
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            44555555555555555554431 233444555555555555555555555554432100 0122233333444455555


Q ss_pred             HHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914          455 EIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP  506 (570)
Q Consensus       455 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  506 (570)
                      +.+..+|+..+.. .+.....|+.++..-.++|+.+.+..+|+++...++.|
T Consensus      1617 eRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             hhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            5555555555443 12233455555555555555555555555555554444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.86  E-value=1.1e-06  Score=87.85  Aligned_cols=173  Identities=16%  Similarity=0.122  Sum_probs=131.0

Q ss_pred             HHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914           39 RERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN  118 (570)
Q Consensus        39 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  118 (570)
                      ++....+|...    .+.+++.-.....+..|  .++.++..|+.+..+.|.+++|..+++.+...  .|+.......+.
T Consensus        56 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a  127 (694)
T PRK15179         56 RQVLERHAAVH----KPAAALPELLDYVRRYP--HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILML  127 (694)
T ss_pred             HHHHHHhhhhc----chHhhHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence            34444455444    34444444444445555  77999999999999999999999999999987  777655443333


Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                      .      .+.+.+++++|+..+++.+... +.+......+..++.+.|++++|..+|+++...+       +.+..++..
T Consensus       128 ~------~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~  193 (694)
T PRK15179        128 R------GVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-------PEFENGYVG  193 (694)
T ss_pred             H------HHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHH
Confidence            2      2334579999999999999874 2255677788889999999999999999999854       455889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL  234 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (570)
                      +..++...|+.++|...|++..+. ..+....|+.+
T Consensus       194 ~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~  228 (694)
T PRK15179        194 WAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence            999999999999999999999876 23344555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.81  E-value=2.7e-07  Score=77.72  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=100.6

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH-HH-HhcCCcch
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN-CF-LQNGSSLC  128 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~  128 (570)
                      ..++.++++..++..++.+|  .+...|..++..+...|++++|+..|+++.+.  .|+.......+. ++ ...     
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~-----  121 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQA-----  121 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc-----
Confidence            46788999999999999999  89999999999999999999999999999998  454444333333 22 333     


Q ss_pred             hhCC--HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          129 VESR--IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       129 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                        |+  .++|..++++.++.++ .+..++..+...+.+.|++++|+..++++.+..
T Consensus       122 --g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        122 --GQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             --CCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence              45  6999999999999853 377889999999999999999999999999976

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=6e-06  Score=69.09  Aligned_cols=250  Identities=12%  Similarity=0.063  Sum_probs=153.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 038914          270 MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV  349 (570)
Q Consensus       270 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  349 (570)
                      ++-+.-.|.+..++..-......  +-+...-..+.++|...|.+.....   .+.... .+.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence            34555667777777665554433  1233444445667777777644332   222222 23333344444444444444


Q ss_pred             HHHHH-HHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          350 EEGLN-LYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRT  428 (570)
Q Consensus       350 ~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  428 (570)
                      ++-+. +.+.+.......+......-...|.+.+++++|++......      +......-+..+.+..+++.|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443 33334433333333334444556788888888888876521      223333334556777888888888888


Q ss_pred             HHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914          429 LRILKYELNIVSYNCLIDGLCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL  504 (570)
Q Consensus       429 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  504 (570)
                      |...   .+..+.+.|..++.+    .+.+..|.-+|++|.++ .+|+..+.+..+.++...|++++|..+++.++.+. 
T Consensus       163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-  237 (299)
T KOG3081|consen  163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-  237 (299)
T ss_pred             HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence            8753   355667777777764    34678888888888875 47888888888888888899999999988888763 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 038914          505 EPNFVIFNTLMLGFIRNNETSK-VIELLHRMDM  536 (570)
Q Consensus       505 ~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~  536 (570)
                      ..++.+...++.+-...|...+ ..+.+.++..
T Consensus       238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            3467777666666566665543 4456666664

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.79  E-value=2.2e-06  Score=71.70  Aligned_cols=159  Identities=14%  Similarity=0.125  Sum_probs=125.5

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914          372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH  451 (570)
Q Consensus       372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  451 (570)
                      ..+...+...|+-+....+....... .+.+.......+....+.|++..|...++++.... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            56666677778877777777665433 25566677778888888999999999999988776 78889999999999999


Q ss_pred             CCHHHHHHHHHhhhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          452 GRLEIAWELFSSLPRVGLMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIEL  530 (570)
Q Consensus       452 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  530 (570)
                      |+++.|..-|.+..+.  .| +....++++..+.-.|+.+.|..++......+ .-|..+-..+..+....|++++|..+
T Consensus       148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence            9999999999988884  44 45678888888888999999999998888753 22666777788888889999999887


Q ss_pred             HHHHH
Q 038914          531 LHRMD  535 (570)
Q Consensus       531 ~~~~~  535 (570)
                      ..+-.
T Consensus       225 ~~~e~  229 (257)
T COG5010         225 AVQEL  229 (257)
T ss_pred             ccccc
Confidence            76654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.78  E-value=0.00015  Score=67.33  Aligned_cols=407  Identities=11%  Similarity=0.079  Sum_probs=237.7

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA  228 (570)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  228 (570)
                      +-|..+|+.||+-+... -.+++.+.++++...       .+.....|..-+..-...++++..+.+|.+.+..-.  +.
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nl   86 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NL   86 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hH
Confidence            45788999999866544 899999999999875       355678899999999999999999999999877533  56


Q ss_pred             HHHHHHHHHHHh-cCCHHH----HHHHHHHHH-HCCCCCC-hhhHHHHHH---------HHHhcCChhHHHHHHHHHHHC
Q 038914          229 VTYTSLICGFCY-ANDWNE----AKHLFIEMM-DQGVQPN-VVTFTVIMD---------ELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       229 ~~~~~l~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~~-~~~~~~l~~---------~~~~~g~~~~a~~~~~~~~~~  292 (570)
                      ..|...+..-.+ .|+...    ..+.|+-.. +.|..+- ...|+..+.         -|..+.+.+...+++++++..
T Consensus        87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t  166 (656)
T KOG1914|consen   87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT  166 (656)
T ss_pred             hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence            666665543222 232222    222333332 2333222 122333332         233344566677788887764


Q ss_pred             CCCCCHhhHH------HHHHH-------HHhcCCHHHHHHHHHHHHhC--CCCCCH---------------hhHHHHHHH
Q 038914          293 GVKPDTSTYN------TLIDG-------YCLTGKIDRARELFVSMESN--GCMHDV---------------VSYSILING  342 (570)
Q Consensus       293 ~~~~~~~~~~------~l~~~-------~~~~~~~~~a~~~~~~~~~~--~~~~~~---------------~~~~~l~~~  342 (570)
                      -+.-=...|+      .-++.       --+...+..|.++++++...  |.....               ..|-.+|.-
T Consensus       167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w  246 (656)
T KOG1914|consen  167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW  246 (656)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            2221111221      11111       11233466777777776431  211111               113333322


Q ss_pred             HHhcCCH---------HHHHHHHHHHHh-CCCCCChhhH-H----HHHHHHhhcCC-------HHHHHHHHHHHHhCCCC
Q 038914          343 YCKTKDV---------EEGLNLYRKMLS-KGIRPTVVTY-H----TLFLGLFEVHQ-------VEHALKLFDEMRRNHVA  400 (570)
Q Consensus       343 ~~~~~~~---------~~A~~~~~~~~~-~~~~~~~~~~-~----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~  400 (570)
                      - +.+-.         ....-.+++... .+..|+..-. .    .....+...|+       .+++..+++.....-..
T Consensus       247 E-ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~  325 (656)
T KOG1914|consen  247 E-KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK  325 (656)
T ss_pred             H-hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            1 11111         112222222221 2333332210 1    11112223333       34556666655543222


Q ss_pred             cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-ChhhH
Q 038914          401 ANTYIYTTFIDGLCKNG---YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA-DVVTY  476 (570)
Q Consensus       401 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~  476 (570)
                      .+..++..+...-...-   ..+....+++++.......-..+|..++....+..-+..|..+|.++.+.+..+ ++.+.
T Consensus       326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa  405 (656)
T KOG1914|consen  326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA  405 (656)
T ss_pred             HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence            33334443333221111   356667777776654323334567888888888889999999999999876655 55666


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 038914          477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD--ASTLSIVVDLLV  554 (570)
Q Consensus       477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~  554 (570)
                      ++++.-+| +++..-|.++|+--+++ ...+...-...+.-+...++-..+..+|++.+..++.|+  ..+|..+++-=.
T Consensus       406 ~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES  483 (656)
T KOG1914|consen  406 AALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES  483 (656)
T ss_pred             HHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence            77776554 67889999999887764 233344446777888899999999999999998777766  579999999988


Q ss_pred             ccCcccccchhhhh
Q 038914          555 KNEISLNSIPQFKR  568 (570)
Q Consensus       555 ~~g~~~~a~~~~~~  568 (570)
                      .-|++..+++.-+|
T Consensus       484 ~vGdL~si~~lekR  497 (656)
T KOG1914|consen  484 NVGDLNSILKLEKR  497 (656)
T ss_pred             hcccHHHHHHHHHH
Confidence            88988877766544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.78  E-value=2.1e-06  Score=72.37  Aligned_cols=119  Identities=10%  Similarity=0.019  Sum_probs=70.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH-HhcCC--hhHH
Q 038914          416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL-CNDGQ--MDKA  492 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A  492 (570)
                      .++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            445555555566555554 5566666666666666666666666666666642 22445555555543 44454  3666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      .+++++..+.+ +.+..++..+...+...|++++|+..|+++.+.
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66666666642 224555566666666666666666666666654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.76  E-value=2.4e-06  Score=71.51  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=132.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914          402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH  481 (570)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  481 (570)
                      |..+ ..+...+...|+-+....+........ +.|.......+....+.|++..|...+.+..... ++|...|+.++-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence            4444 666777888898888888887765433 5677777788999999999999999999998863 678899999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccc
Q 038914          482 GLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISL  560 (570)
Q Consensus       482 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  560 (570)
                      +|.+.|++++|..-|.+..+.  .| +...++.+...+.-.|+.+.|..++......+ .-|..+-..+.-+....|+.+
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence            999999999999999999995  44 56677889999999999999999999998654 447788888888999999998


Q ss_pred             ccchh
Q 038914          561 NSIPQ  565 (570)
Q Consensus       561 ~a~~~  565 (570)
                      +|..+
T Consensus       220 ~A~~i  224 (257)
T COG5010         220 EAEDI  224 (257)
T ss_pred             HHHhh
Confidence            77654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.76  E-value=2.5e-06  Score=75.21  Aligned_cols=189  Identities=11%  Similarity=0.010  Sum_probs=130.5

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV  152 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  152 (570)
                      .....+..++..+...|++++|+..|++++..  .|+.....   .++...|..+...|++++|+..++++++..+. +.
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~---~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~  104 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAE---QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HP  104 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CC
Confidence            56678899999999999999999999999887  44432111   11122223445567999999999999987432 22


Q ss_pred             c---hHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          153 F---TYNTLINGLCRT--------GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD  221 (570)
Q Consensus       153 ~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  221 (570)
                      .   ++..+..++.+.        |++++|.+.|+++....       +.+...+..+.....    ...      ..  
T Consensus       105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~----~~~------~~--  165 (235)
T TIGR03302       105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDY----LRN------RL--  165 (235)
T ss_pred             chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHH----HHH------HH--
Confidence            2   455566666654        78999999999999865       222333322221111    000      00  


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          222 ENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV--QPNVVTFTVIMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       222 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                            ......+...+...|++.+|+..++.......  +.....+..+..++...|++++|..+++.+...
T Consensus       166 ------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       166 ------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             ------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                  01123566778999999999999999988632  123568889999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.71  E-value=5.1e-06  Score=83.26  Aligned_cols=118  Identities=11%  Similarity=0.063  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD  210 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  210 (570)
                      |++++|..+++.+.+.. +.+..+...++.++.+.+++++|+..+++....+       +.+......+..++.+.|+++
T Consensus       100 g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~~~~~~~~a~~l~~~g~~~  171 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSSAREILLEAKSWDEIGQSE  171 (694)
T ss_pred             CCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHhcchH
Confidence            46666666666666552 1133445555566666666666666666666543       334455555566666666666


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          211 KAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      +|..+|+++... .+-+..++..+...+...|+.++|...|+...+.
T Consensus       172 ~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        172 QADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666666666653 2224555666666666666666666666665554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.69  E-value=2.6e-05  Score=79.15  Aligned_cols=171  Identities=9%  Similarity=0.093  Sum_probs=112.8

Q ss_pred             CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914           72 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD  151 (570)
Q Consensus        72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (570)
                      +.+..+|..|+..+...+++++|.++.+..++.  .|+...+.......      +...+++.++.-+            
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l------~~q~~~~~~~~lv------------   87 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGIL------SLSRRPLNDSNLL------------   87 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHH------HHhhcchhhhhhh------------
Confidence            478889999999999999999999999988877  56654433333221      1122333333222            


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                           .++.......++.-..-+...+...        ..+..++..++.+|-+.|+.++|.++++++++.+ +-|+.+.
T Consensus        88 -----~~l~~~~~~~~~~~ve~~~~~i~~~--------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aL  153 (906)
T PRK14720         88 -----NLIDSFSQNLKWAIVEHICDKILLY--------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIV  153 (906)
T ss_pred             -----hhhhhcccccchhHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHH
Confidence                 3444444445554444444444442        2345577778888888888888888888888876 3477888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                      +.+...|... ++++|..++.+.+..               +...+++..+..++.++...
T Consensus       154 Nn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        154 KKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             HHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence            8888888888 888888887776653               44555666666666666654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.68  E-value=1.4e-05  Score=81.00  Aligned_cols=233  Identities=12%  Similarity=0.081  Sum_probs=116.1

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      +..++..|+..+...+++++|.++.+...+..       +.....|..++..+.+.++..++.-+  .+.          
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NLI----------   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hhh----------
Confidence            45567788888888888888888888777653       23344555555566666665555444  222          


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL  310 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  310 (570)
                           .......++.-+..++..+...  .-+..++..++.+|-+.|+.++|..+++++++.+ +-|+.+.+.+...|..
T Consensus        91 -----~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         91 -----DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE  162 (906)
T ss_pred             -----hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence                 2222233333333333333332  1123344555555555555555555555555554 3345555555555555


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhhcCCH
Q 038914          311 TGKIDRARELFVSMESNGCMHDVVSYSILING-----YCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHTLFLGLFEVHQV  384 (570)
Q Consensus       311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  384 (570)
                      . ++++|.+++.++...-+  +..-|+.+...     .....+++.-..+.+++... |..--..++..+...|-..+++
T Consensus       163 ~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~  239 (906)
T PRK14720        163 E-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW  239 (906)
T ss_pred             h-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence            5 55555555555443200  00001111100     00111222222333333322 2222233444555666677777


Q ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 038914          385 EHALKLFDEMRRNHVAANTYIYTTFIDGLC  414 (570)
Q Consensus       385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  414 (570)
                      ++++.+++.+.+.. +.|......++.+|.
T Consensus       240 ~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        240 DEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             hHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            78888887777764 335555556666554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=2.8e-05  Score=65.19  Aligned_cols=151  Identities=17%  Similarity=0.072  Sum_probs=85.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----
Q 038914          340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----  415 (570)
Q Consensus       340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  415 (570)
                      ...|+..+++++|++......      +......=...+.+..+.+-|.+.++.|.+-   .+..+++.+..++.+    
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence            345566666666666655411      2333333344455566666666666666542   244455555555443    


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH-HHH
Q 038914          416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK-AHG  494 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~  494 (570)
                      .+....|.-+|+++.+.. +|+..+.+..+.++...|++++|..+++++.... ..++.+...++.+-...|...+ ..+
T Consensus       186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r  263 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTER  263 (299)
T ss_pred             chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence            345666777777776533 6666777777777777777777777777776653 3345555555555555554433 334


Q ss_pred             HHHHHHH
Q 038914          495 LFLDMEA  501 (570)
Q Consensus       495 ~~~~~~~  501 (570)
                      .+.++..
T Consensus       264 ~l~QLk~  270 (299)
T KOG3081|consen  264 NLSQLKL  270 (299)
T ss_pred             HHHHHHh
Confidence            4444444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.65  E-value=2.9e-06  Score=67.53  Aligned_cols=108  Identities=8%  Similarity=-0.045  Sum_probs=79.9

Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          138 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL  217 (570)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  217 (570)
                      .++++.++.  .|+  .+..+...+.+.|++++|...|+.+...+       +.+...|..+..++...|++++|...|+
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~   82 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYG   82 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            455555554  233  34456677778888888888888887765       5567788888888888888888888888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          218 KMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       218 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      +....+ +.+...+..+..++...|++++|+..|+..++.
T Consensus        83 ~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         83 HALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888764 346777888888888888888888888887775

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.63  E-value=4.3e-06  Score=66.52  Aligned_cols=94  Identities=12%  Similarity=-0.070  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh
Q 038914          406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN  485 (570)
Q Consensus       406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  485 (570)
                      +......+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+.+.... +.+...+..++.++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            3344555666677777777777666654 4566666666666777777777777777766642 3345666666667777


Q ss_pred             cCChhHHHHHHHHHHH
Q 038914          486 DGQMDKAHGLFLDMEA  501 (570)
Q Consensus       486 ~g~~~~A~~~~~~~~~  501 (570)
                      .|++++|+..|+..++
T Consensus       105 ~g~~~eAi~~~~~Al~  120 (144)
T PRK15359        105 MGEPGLAREAFQTAIK  120 (144)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            7777777777777666

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=4.6e-05  Score=63.46  Aligned_cols=188  Identities=10%  Similarity=0.071  Sum_probs=130.0

Q ss_pred             hcCCHHHHHHHHHHHHhC---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCH
Q 038914          310 LTGKIDRARELFVSMESN---G-CMHDVV-SYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQV  384 (570)
Q Consensus       310 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  384 (570)
                      ...+.++..+++..+...   | ..++.. .|..++-+....|+.+.|..+++.+... ++.+......-...+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence            345678888888777542   2 233433 3455566667788888888888888776 332333333333345567888


Q ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 038914          385 EHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSL  464 (570)
Q Consensus       385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  464 (570)
                      ++|+++++.+.+.+ +.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999998888765 556666666666667778777888777776654 3678888988989999999999999888888


Q ss_pred             hhCCCCC-ChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 038914          465 PRVGLMA-DVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAK  502 (570)
Q Consensus       465 ~~~~~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~  502 (570)
                      +-.  .| ++..|..+...+...|   +..-|.++|.+.++.
T Consensus       181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            764  44 4445556666655444   666788888888874

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.62  E-value=0.00077  Score=66.69  Aligned_cols=195  Identities=13%  Similarity=0.185  Sum_probs=131.2

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      ..+.|+.++|...++..-...+  .+..+...+-.+|.+.|+.++|..+|+++...  .|+......++.+|.+-+ .|.
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~-~yk  127 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK-SYK  127 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH-HHH
Confidence            4578999999988887766655  57788889999999999999999999999987  677777777788877753 111


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-C---------hhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG-H---------TIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                      +  +-..|+++|..     ++.+...+=+++....+.- .         ..-|..+++.+.+.++.     -.+..-...
T Consensus       128 ~--qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk-----~~s~aE~~L  195 (932)
T KOG2053|consen  128 K--QQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK-----IESEAEIIL  195 (932)
T ss_pred             H--HHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc-----cchHHHHHH
Confidence            1  12234444442     2334454444555554321 1         23466777777765421     112223333


Q ss_pred             HHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038914          199 IIDGLCKKGFVDKAKELF-LKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ  260 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  260 (570)
                      ....+...|.+++|.+++ ....+.-..-+...-+.-+..+...++|.+..++-.++...|..
T Consensus       196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND  258 (932)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence            445566788999999999 44444433445555566778888999999999999999887643

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=7.4e-05  Score=62.31  Aligned_cols=188  Identities=17%  Similarity=0.131  Sum_probs=123.0

Q ss_pred             CChHHHHHHHHHHHhC---C-CCCCHh-hHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038914           89 KHYDTVLSLFKRLNST---G-LFPDLY-AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC  163 (570)
Q Consensus        89 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (570)
                      .+.++.++++.+++..   | ..++.. .+..++-+...       .|+.+.|...+.++...- +.+..+-..-...+-
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld-------~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lE   97 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD-------TGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLE   97 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHH
Confidence            4555566666655433   1 222322 23333333333       358888888888877662 323333333344455


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038914          164 RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAND  243 (570)
Q Consensus       164 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  243 (570)
                      ..|++++|+++++.+++.+       +.|..++..-+.+....|+.-+|++-+....+. +.-|...|.-+...|...|+
T Consensus        98 a~~~~~~A~e~y~~lL~dd-------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDD-------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             HhhchhhHHHHHHHHhccC-------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH
Confidence            6788888888888888876       566777777777777788888888888777775 55688888888888888888


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 038914          244 WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG---KMDGASRLLELMILRG  293 (570)
Q Consensus       244 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~  293 (570)
                      +++|.-.+++++-.. +.+...+..+...+.-.|   +.+.+.++|.+.++..
T Consensus       170 f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            888888888887742 223444445555544444   4556778888887763

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.53  E-value=5e-06  Score=65.96  Aligned_cols=92  Identities=13%  Similarity=0.029  Sum_probs=38.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN  521 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  521 (570)
                      ..++..+...|++++|...++.+...+ +.+...+..++.++...|++++|..++++..+.+ +.+...+..+..++...
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence            333344444444444444444443321 2233344444444444444444444444444321 22233334444444444


Q ss_pred             CCHHHHHHHHHHHH
Q 038914          522 NETSKVIELLHRMD  535 (570)
Q Consensus       522 g~~~~a~~~~~~~~  535 (570)
                      |++++|...+++..
T Consensus        99 g~~~~A~~~~~~al  112 (135)
T TIGR02552        99 GEPESALKALDLAI  112 (135)
T ss_pred             CCHHHHHHHHHHHH
Confidence            44444444444444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.51  E-value=5.3e-06  Score=65.78  Aligned_cols=120  Identities=13%  Similarity=0.026  Sum_probs=97.3

Q ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914          390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL  469 (570)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  469 (570)
                      .++.+.... +.+......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+ 
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            455665543 3345667778888999999999999999998876 6688899999999999999999999999998863 


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038914          470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTL  514 (570)
Q Consensus       470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  514 (570)
                      +.+...+..+..++...|++++|...|++..+.  .|+...+..+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  124 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL  124 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence            446678888999999999999999999999984  5665554433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=2.7e-05  Score=71.34  Aligned_cols=150  Identities=16%  Similarity=0.127  Sum_probs=96.5

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD-  151 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-  151 (570)
                      ....+++..+......|++++|+..++.+++.  .|+...|..+...      .+...++..+|.+.+++++..  .|+ 
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~------i~~~~nk~~~A~e~~~kal~l--~P~~  373 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGD------ILLEANKAKEAIERLKKALAL--DPNS  373 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHH------HHHHcCChHHHHHHHHHHHhc--CCCc
Confidence            34456666666667777777777777777766  5666555544432      233345777777777777765  333 


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      ......+..++.+.|++.+|+.+++.....+       +.|...|..|..+|...|+..++.....+.            
T Consensus       374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------  434 (484)
T COG4783         374 PLLQLNLAQALLKGGKPQEAIRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEG------------  434 (484)
T ss_pred             cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------
Confidence            4445566777777777777777777777664       556777777777777777766665554433            


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                            +...|+++.|+..+....+.
T Consensus       435 ------~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         435 ------YALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             ------HHhCCCHHHHHHHHHHHHHh
Confidence                  44566777777666666554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=9.8e-05  Score=67.76  Aligned_cols=162  Identities=18%  Similarity=0.142  Sum_probs=120.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914          371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK  450 (570)
Q Consensus       371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  450 (570)
                      .......+...|+++.|+..+..+.+.. +.|...+......+...++.++|.+.++++.... +........+..++.+
T Consensus       309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~  386 (484)
T COG4783         309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence            3444455667889999999999888763 5677777788888999999999999999988774 3336667788889999


Q ss_pred             cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          451 HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIEL  530 (570)
Q Consensus       451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  530 (570)
                      .|++.+|.++++..... .+-|+..|..|.++|...|+..++.....+                  .+...|++++|+..
T Consensus       387 ~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~  447 (484)
T COG4783         387 GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIF  447 (484)
T ss_pred             cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHH
Confidence            99999999999988775 366778899999999999988777665433                  45567888888888


Q ss_pred             HHHHHhCC--CCCCHHHHHHHHHHH
Q 038914          531 LHRMDMRN--VMPDASTLSIVVDLL  553 (570)
Q Consensus       531 ~~~~~~~~--~~p~~~~~~~l~~~~  553 (570)
                      +....+..  ..|+..-+...++..
T Consensus       448 l~~A~~~~~~~~~~~aR~dari~~~  472 (484)
T COG4783         448 LMRASQQVKLGFPDWARADARIDQL  472 (484)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHH
Confidence            88887542  123333344444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=9.8e-05  Score=66.08  Aligned_cols=268  Identities=14%  Similarity=0.056  Sum_probs=163.0

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC  119 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  119 (570)
                      +.....|....+..+|.+|+..+..++...|  .+...|..-+..+...|++++|.--.+..++.  .|+..-      .
T Consensus        50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k------~  119 (486)
T KOG0550|consen   50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSK------G  119 (486)
T ss_pred             HHHHhhcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccc------c
Confidence            5566678888889999999999999999999  77888888899999999999998888777655  222110      1


Q ss_pred             HHhcCCcchhhCCHHHHHHHH---------------HHHHhcCC-CCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhCC
Q 038914          120 FLQNGSSLCVESRIMEAAALF---------------TKLRVFGC-EPDVFTYNTLI-NGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~---------------~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      ..+.+..+...++..+|.+.+               +.+..... +|....+..+- .++.-.|++++|.+.--.+++.+
T Consensus       120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld  199 (486)
T KOG0550|consen  120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD  199 (486)
T ss_pred             ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence            111111111122333333222               22222211 23334444432 34456788888888888887765


Q ss_pred             CCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhcCCHHHHHH
Q 038914          183 GEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY-------------TSLICGFCYANDWNEAKH  249 (570)
Q Consensus       183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~  249 (570)
                             ..+......-..++...++.+.|...|++.+..+  |+...-             ..-.+-..+.|.+..|.+
T Consensus       200 -------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E  270 (486)
T KOG0550|consen  200 -------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE  270 (486)
T ss_pred             -------cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence                   3344444444455667788888888888887653  332211             112233456677777777


Q ss_pred             HHHHHHHCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          250 LFIEMMDQG---VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMES  326 (570)
Q Consensus       250 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  326 (570)
                      .|.+.+...   ..++...|.....+..+.|+.++|+.-.+.....+ ..-+..+..-..++...+++++|.+-+++..+
T Consensus       271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777776542   34445556666666677777777777777766542 00112333334556666777777777777665


Q ss_pred             C
Q 038914          327 N  327 (570)
Q Consensus       327 ~  327 (570)
                      .
T Consensus       350 ~  350 (486)
T KOG0550|consen  350 L  350 (486)
T ss_pred             h
Confidence            4

>PF12854 PPR_1: PPR repeat

Probab=98.48  E-value=2.5e-07  Score=51.87  Aligned_cols=32  Identities=34%  Similarity=0.694  Sum_probs=16.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRM  534 (570)
Q Consensus       503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  534 (570)
                      |+.||..+|+.++.+|++.|+.++|.+++++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44455555555555555555555555555444

>PF12854 PPR_1: PPR repeat

Probab=98.48  E-value=2.3e-07  Score=52.03  Aligned_cols=32  Identities=50%  Similarity=0.888  Sum_probs=19.7

Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM  499 (570)
Q Consensus       468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  499 (570)
                      |+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666555

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=3.6e-06  Score=71.94  Aligned_cols=114  Identities=15%  Similarity=0.204  Sum_probs=91.6

Q ss_pred             HHHHHHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 038914           35 ETFLRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYN  114 (570)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  114 (570)
                      .....+.++..|....+.++|.+|+..|..+++.+|  .|..-|..-+.+|.+.|+++.|++-.+.++..  .|..    
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~y----  148 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHY----  148 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHH----
Confidence            445567778888888999999999999999999998  88888999999999999999999999999976  3322    


Q ss_pred             HHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 038914          115 ILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN  160 (570)
Q Consensus       115 ~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  160 (570)
                        ..+|.++|..|...|++++|++.|.+.++.  .|+..+|-.=+.
T Consensus       149 --skay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~  190 (304)
T KOG0553|consen  149 --SKAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLK  190 (304)
T ss_pred             --HHHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence              255666666666678999999999998886  667666554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.29  E-value=6.1e-05  Score=60.25  Aligned_cols=115  Identities=11%  Similarity=0.023  Sum_probs=53.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh--hhHHHHHHHHHhcCChh
Q 038914          416 NGYIVKAVELFRTLRILKYELN---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV--VTYNIMIHGLCNDGQMD  490 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~  490 (570)
                      .++...+...++.+.... +.+   ......+...+...|++++|...|+.+......++.  .....+..++...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            455555555555555432 222   122223344455555555555555555554311111  12333455555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          491 KAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHR  533 (570)
Q Consensus       491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  533 (570)
                      +|+..++.....  ......+.....++.+.|++++|+..|++
T Consensus       103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555555442221  11233344445555555555555555554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=0.0029  Score=60.86  Aligned_cols=211  Identities=13%  Similarity=0.061  Sum_probs=119.1

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ---NGSSLCVESRIMEAAALFTKLRVFGCE  149 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (570)
                      |.+..|..++....+.-.++-|...|-+....   +.......+-..+++   ....-..-|++++|.++|-.+-+++  
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence            67889999998777777777777776554432   222111111111110   0111222478888888887765542  


Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAV  229 (570)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  229 (570)
                             ..|..+.+.||+-...++++.--....     -..-..+|+.+...+.....+++|.+.|..-...       
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------  825 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------  825 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------
Confidence                   456667778888777766654322110     1112456777777777777788887777654321       


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038914          230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC  309 (570)
Q Consensus       230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  309 (570)
                        ...+.++.+..++++-..+-..+     +-+....-.+..++...|.-++|.+.+-+.   + .|.     ..+..|.
T Consensus       826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv  889 (1189)
T KOG2041|consen  826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCV  889 (1189)
T ss_pred             --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHH
Confidence              23445555555555544433332     335555666777777777777776665332   1 111     2345566


Q ss_pred             hcCCHHHHHHHHHH
Q 038914          310 LTGKIDRARELFVS  323 (570)
Q Consensus       310 ~~~~~~~a~~~~~~  323 (570)
                      ..+++.+|.++-+.
T Consensus       890 ~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  890 ELNQWGEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666665543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.25  E-value=5e-05  Score=70.35  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038914          374 LFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGR  453 (570)
Q Consensus       374 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  453 (570)
                      ++..+...++++.|+.+++++.+..  |+  ....++..+...++..+|.+++++..... +.+...+..-...+...++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            3333444455555555555555432  22  22234444444455555555555544332 3344444444444555555


Q ss_pred             HHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          454 LEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDM  499 (570)
Q Consensus       454 ~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~  499 (570)
                      ++.|+.+.+++.+.  .|+. .+|..|+.+|...|+++.|+-.++.+
T Consensus       250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            55555555555542  3333 34555555555555555555444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.25  E-value=2.8e-05  Score=62.20  Aligned_cols=121  Identities=14%  Similarity=0.050  Sum_probs=89.4

Q ss_pred             CCCChhHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           51 TTITPNDALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      ..++.+.+...++.+....|.. ....+...++..+...|++++|...|+.+....  |+.......   ..+++..+..
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a---~l~LA~~~~~   97 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLA---RLRLARILLQ   97 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHH---HHHHHHHHHH
Confidence            4678999999999999988732 224566678889999999999999999999985  443221111   1112234556


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM  178 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  178 (570)
                      .|++++|+..++.....  ......+...+.++.+.|++++|...|+..
T Consensus        98 ~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   98 QGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             cCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            78999999999875433  234456777889999999999999999875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.22  E-value=0.00013  Score=67.59  Aligned_cols=125  Identities=16%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914          336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK  415 (570)
Q Consensus       336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  415 (570)
                      ...++..+...++++.|+++|+++.+..  |+  ....++..+...++..+|.+++.+..+.. +.+...+......+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3445556666778888888888888762  33  44556677777777888888887777653 4566677777777888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .++++.|+.+.+++.... |-+..+|..|+.+|...|+++.|+..++.+.-
T Consensus       247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            888888888888888764 55667888888888888999888888887653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.20  E-value=0.0047  Score=56.53  Aligned_cols=464  Identities=15%  Similarity=0.175  Sum_probs=238.2

Q ss_pred             hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCH---HhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914           43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPPV---TSF-NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN  118 (570)
Q Consensus        43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  118 (570)
                      ...|..+.+.+++.+|.++|.++.+.....+..   ..+ +.++.++. .++.+.-........+.  .| ...|..++.
T Consensus        10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~   85 (549)
T PF07079_consen   10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFK   85 (549)
T ss_pred             HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHH
Confidence            346777888999999999999987654311111   122 34445544 45556555555555554  34 233444444


Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhc--CCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVF--GCEP------------DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE  184 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  184 (570)
                      +...     .+++.+.+|+..+......  +..+            +...=+..+..+...|++.++..+++++...--.
T Consensus        86 ~L~~-----Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk  160 (549)
T PF07079_consen   86 ALVA-----YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK  160 (549)
T ss_pred             HHHH-----HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence            3322     2467999999988876654  2111            1112233456677889999999988887754300


Q ss_pred             CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038914          185 IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP  261 (570)
Q Consensus       185 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  261 (570)
                        .-..-+..+|+.++-.+.+.        .|-++++.   ++-|+   |--++..|.+.=+      .++.-.-..+-|
T Consensus       161 --rE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~p  221 (549)
T PF07079_consen  161 --RECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIP  221 (549)
T ss_pred             --hhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCc
Confidence              00225677888766655532        23333221   12222   2223333322211      111100011223


Q ss_pred             ChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHh
Q 038914          262 NVVTFTVIMDELCKN--GKMDGASRLLELMILRGVKPDTS-TYNTLIDGYCLTGKIDRARELFVSMESNGCM----HDVV  334 (570)
Q Consensus       262 ~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~  334 (570)
                      .......++....-.  .+..--.++++.-...-+.|+.. +...+...+..  +.+++..+.+.+......    .-..
T Consensus       222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~  299 (549)
T PF07079_consen  222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID  299 (549)
T ss_pred             HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333333333332211  11222223333333333444433 22333333333  445555554444332111    1234


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-------HHHh----hcCCHHHHHHHHHHHHhCCCCcCH
Q 038914          335 SYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF-------LGLF----EVHQVEHALKLFDEMRRNHVAANT  403 (570)
Q Consensus       335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~----~~~~~~~a~~~~~~~~~~~~~~~~  403 (570)
                      ++..++....+.++...|.+.+..+...  .|+...-..++       ...+    ...+..+-+.+|+.....++  |.
T Consensus       300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--Dr  375 (549)
T PF07079_consen  300 RFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DR  375 (549)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cH
Confidence            5677777778888888888887776654  23322211111       1111    11223344555565554432  22


Q ss_pred             H-HHHHH---HHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHhhhhCCCCC
Q 038914          404 Y-IYTTF---IDGLCKNGY-IVKAVELFRTLRILKYELNIVSYNCLI----DGLCK---HGRLEIAWELFSSLPRVGLMA  471 (570)
Q Consensus       404 ~-~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~  471 (570)
                      . ....+   +.-+-+.|. -++|+++++.+.+.. +-|...-|.+.    .+|..   ...+..-..+-+-+.+.|++|
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~  454 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP  454 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            1 11122   223334444 888999998887654 44544433332    22222   123333444444445567666


Q ss_pred             Ch----hhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          472 DV----VTYNIMIHG--LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAST  545 (570)
Q Consensus       472 ~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  545 (570)
                      -.    ..-|.|..+  +...|++.++.-.-.-+.+  +.|++.+|..+..+.....++++|..+++++     +|+..+
T Consensus       455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~  527 (549)
T PF07079_consen  455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERM  527 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhh
Confidence            33    233444433  4567899888877666666  7899999999988888899999999999876     456555


Q ss_pred             HHH
Q 038914          546 LSI  548 (570)
Q Consensus       546 ~~~  548 (570)
                      ++.
T Consensus       528 ~ds  530 (549)
T PF07079_consen  528 RDS  530 (549)
T ss_pred             HHH
Confidence            543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.16  E-value=3.9e-06  Score=57.03  Aligned_cols=64  Identities=23%  Similarity=0.332  Sum_probs=55.2

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILI  117 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  117 (570)
                      +..|++++|+..|+.++..+|  .+...+..++.++.+.|++++|.++++++...  .|+...+..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence            357899999999999999999  79999999999999999999999999999988  67755555444

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.13  E-value=0.0007  Score=59.14  Aligned_cols=59  Identities=12%  Similarity=-0.015  Sum_probs=47.8

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPV-TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF  107 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  107 (570)
                      ....|++++|+..|+.++...|..+-. .+...++.++.+.+++++|+..|++.++..+.
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            455789999999999999998833221 23467889999999999999999999998443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.13  E-value=5.7e-06  Score=73.54  Aligned_cols=275  Identities=12%  Similarity=0.018  Sum_probs=167.4

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHH--hC--CCCCCHhhHHHHHH
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLN--ST--GLFPDLYAYNILIN  118 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~~~~~~~~~~~l~  118 (570)
                      -|..+++.|+....+.+|+.+++.+-....  ...|..|+.+|.-.++|++|+++..-=+  ..  |-....      ..
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE------AK   96 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE------AK   96 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc------cc
Confidence            578889999999999999999988652111  2346778888888889999887643211  11  111111      13


Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhc----CCC-CCcchHHHHHHHHHhcCC--------------------hhHHHH
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVF----GCE-PDVFTYNTLINGLCRTGH--------------------TIVALN  173 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~  173 (570)
                      ++..+|..+...|.+++|+..-.+-+..    |-. ....++..+...|...|+                    ++.|.+
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~  176 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK  176 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence            4556667777788999998776554322    211 123455557777765442                    223444


Q ss_pred             HHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 038914          174 LFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD----ENIN-PNAVTYTSLICGFCYANDWNEAK  248 (570)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~  248 (570)
                      .|.+-++.....|. .-.-...|..|...|.-.|+++.|+...+.-+.    -|-+ .....+..|..+++-.|+++.|.
T Consensus       177 fy~eNL~l~~~lgD-r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~  255 (639)
T KOG1130|consen  177 FYMENLELSEKLGD-RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI  255 (639)
T ss_pred             HHHHHHHHHHHhhh-HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence            44433221100000 011123566666677777888888877654322    2211 12356777888888889999998


Q ss_pred             HHHHHHHHC----C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914          249 HLFIEMMDQ----G-VQPNVVTFTVIMDELCKNGKMDGASRLLELMILR-----GVKPDTSTYNTLIDGYCLTGKIDRAR  318 (570)
Q Consensus       249 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~  318 (570)
                      +.|+.....    | -........+|...|.-..++++|+.++.+-+..     +..-....+..|..+|...|..++|+
T Consensus       256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence            888765432    2 1223455667788888888888888877654432     11223456777888888888888888


Q ss_pred             HHHHHHHh
Q 038914          319 ELFVSMES  326 (570)
Q Consensus       319 ~~~~~~~~  326 (570)
                      ...+.-++
T Consensus       336 ~fae~hl~  343 (639)
T KOG1130|consen  336 YFAELHLR  343 (639)
T ss_pred             HHHHHHHH
Confidence            77665443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.09  E-value=0.00026  Score=63.96  Aligned_cols=93  Identities=16%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----h-hhHH
Q 038914          200 IDGLCKK-GFVDKAKELFLKMKDE----NIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN-----V-VTFT  267 (570)
Q Consensus       200 ~~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~  267 (570)
                      ...|... |++++|++.|++..+.    +.+ .-..++..++..+.+.|++++|..+|+++.......+     . ..+.
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            3344444 6677777766665432    100 0123445566667777777777777777665422111     1 1122


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          268 VIMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       268 ~l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                      ..+-++...|++..|.+.+++....
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3334555667777777777776544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.08  E-value=0.0013  Score=52.21  Aligned_cols=148  Identities=16%  Similarity=0.105  Sum_probs=97.6

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI  133 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  133 (570)
                      |++.+..-..+.....   |.+.....|+.++.+.|++.+|...|++...--.--|......+-.+....       +++
T Consensus        71 dP~R~~Rea~~~~~~A---pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-------~~~  140 (251)
T COG4700          71 DPERHLREATEELAIA---PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-------QEF  140 (251)
T ss_pred             ChhHHHHHHHHHHhhc---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-------ccH
Confidence            4444444444444333   456667788888889999999999999888654444555555555555444       488


Q ss_pred             HHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHH
Q 038914          134 MEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKA  212 (570)
Q Consensus       134 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  212 (570)
                      ..|...++++-+.... .++.....+.+.+...|.+.+|...|+.+...        -|+...-......+.++|+.+++
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--------ypg~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--------YPGPQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--------CCCHHHHHHHHHHHHHhcchhHH
Confidence            8888888887765311 12334556677788888888888888888774        46666666666777777776666


Q ss_pred             HHHHHHH
Q 038914          213 KELFLKM  219 (570)
Q Consensus       213 ~~~~~~~  219 (570)
                      ..-+..+
T Consensus       213 ~aq~~~v  219 (251)
T COG4700         213 NAQYVAV  219 (251)
T ss_pred             HHHHHHH
Confidence            5444333

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.07  E-value=0.0088  Score=54.72  Aligned_cols=145  Identities=17%  Similarity=0.205  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH-HHHH
Q 038914          403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILK-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY-NIMI  480 (570)
Q Consensus       403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~  480 (570)
                      ..+|...+....+..-++.|..+|-++.+.+ ..+++.++++++.-+ ..|+...|.++|+--...  -||...| +..+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3456667777777778889999999988877 567778888887655 467888999999876664  3555444 4456


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914          481 HGLCNDGQMDKAHGLFLDMEAKGLEPN--FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL  553 (570)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  553 (570)
                      .-+...++-+.|..+|+..+.. +..+  ...|..++.--..-|+...+..+-++|...  -|-..+.....+.+
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry  545 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY  545 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence            6667788889999999876654 3333  568888888888889999888888888753  35444444444443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.06  E-value=5.9e-05  Score=67.34  Aligned_cols=275  Identities=15%  Similarity=0.085  Sum_probs=171.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH--hc--CCC-CCcchHH
Q 038914           82 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLR--VF--GCE-PDVFTYN  156 (570)
Q Consensus        82 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~--~~~-~~~~~~~  156 (570)
                      +.-+++.|+....+.+|+.++..|.    ..+..+-..|+.+|..|...++|++|+++...=+  .+  |-+ -...+..
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg   99 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG   99 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence            3467899999999999999998763    3455566778889999999999999999765322  11  111 1233445


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC--------------------HHHHHHHH
Q 038914          157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF--------------------VDKAKELF  216 (570)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~  216 (570)
                      .|...+--.|.+++|+-...+-+....++|. ......++..|..+|...|+                    ++.|.++|
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgD-rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy  178 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELGD-RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY  178 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHhH-HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence            5666776778888887665554432211111 11224556667777766554                    23344444


Q ss_pred             HHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCChhHHHHHH
Q 038914          217 LKMKD----ENI-NPNAVTYTSLICGFCYANDWNEAKHLFIEMMD----QGVQ-PNVVTFTVIMDELCKNGKMDGASRLL  286 (570)
Q Consensus       217 ~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~  286 (570)
                      .+=++    .|- -..-.+|..|...|.-.|+++.|+...+.-+.    .|.. .....+..+..+++-.|+++.|.+.|
T Consensus       179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence            33211    110 01234566677777778889988877654332    2211 12345667888888889999999888


Q ss_pred             HHHHHC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038914          287 ELMILR----G-VKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN-----GCMHDVVSYSILINGYCKTKDVEEGLNLY  356 (570)
Q Consensus       287 ~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  356 (570)
                      +.....    | -.........|...|.-..++++|+..+.+-+..     +..-....+-.+..+|...|..++|+...
T Consensus       259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa  338 (639)
T KOG1130|consen  259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA  338 (639)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            765432    2 1223345667778888888888888877653221     01124456777888888888888888776


Q ss_pred             HHHHh
Q 038914          357 RKMLS  361 (570)
Q Consensus       357 ~~~~~  361 (570)
                      ...+.
T Consensus       339 e~hl~  343 (639)
T KOG1130|consen  339 ELHLR  343 (639)
T ss_pred             HHHHH
Confidence            65554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=0.0037  Score=56.39  Aligned_cols=262  Identities=12%  Similarity=0.027  Sum_probs=141.4

Q ss_pred             CCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH
Q 038914          124 GSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL  203 (570)
Q Consensus       124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  203 (570)
                      |..+.++.++.+|+..+...++..+. ++..|..-...+...|++++|.--.+...+..       +.....+.....++
T Consensus        56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-------d~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-------DGFSKGQLREGQCH  127 (486)
T ss_pred             cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-------CCccccccchhhhh
Confidence            34455567899999999999887533 46667777778888899999888777766643       11233444444555


Q ss_pred             HhcCCHHHHHHHHHHH---------------HhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 038914          204 CKKGFVDKAKELFLKM---------------KDENI-NPNAVTYTSL-ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTF  266 (570)
Q Consensus       204 ~~~g~~~~a~~~~~~~---------------~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  266 (570)
                      ...+...+|.+.++.-               ..... +|....|..+ ..++...|++++|..+--.+++... .+....
T Consensus       128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al  206 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEAL  206 (486)
T ss_pred             hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHH
Confidence            5555555555444421               11111 1222333332 2455666777777777666666532 133333


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-------------HHHHHHHHhcCCHHHHHHHHHHHHhCC---CC
Q 038914          267 TVIMDELCKNGKMDGASRLLELMILRGVKPDTSTY-------------NTLIDGYCLTGKIDRARELFVSMESNG---CM  330 (570)
Q Consensus       267 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~  330 (570)
                      ..-..++.-.++.+.+...|++.+..  .|+...-             ..-.+-..+.|.+..|.+.+.+.+..+   ..
T Consensus       207 ~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~  284 (486)
T KOG0550|consen  207 YVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK  284 (486)
T ss_pred             HhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence            33334445566677777777777654  2332211             111223445566666666666655442   22


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914          331 HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN  397 (570)
Q Consensus       331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  397 (570)
                      ++...|.....+..+.|+..+|+.--+...+.+.. -...+..-..++...++|++|.+-++...+.
T Consensus       285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444555555555666666666655555543100 1122333334445556666666666555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.05  E-value=3e-06  Score=56.90  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=51.0

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD  109 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  109 (570)
                      .+..|++++|+..|+.+++..|  .+..+|..++.++...|++++|+..|+++++.  .|+
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~   63 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD   63 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred             HHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence            4567899999999999999998  79999999999999999999999999999876  454

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.01  E-value=8.7e-06  Score=57.96  Aligned_cols=83  Identities=17%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      .|+++.|+.+|+++++..|..++...+..++.++.+.|++++|+.++++ .+.  .+.......++.      ..+...|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a------~~~~~l~   72 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLA------RCLLKLG   72 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHH------HHHHHTT
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHH------HHHHHhC
Confidence            5799999999999999988322566677899999999999999999998 333  333322222222      2234457


Q ss_pred             CHHHHHHHHHHH
Q 038914          132 RIMEAAALFTKL  143 (570)
Q Consensus       132 ~~~~A~~~~~~~  143 (570)
                      ++++|+..|++.
T Consensus        73 ~y~eAi~~l~~~   84 (84)
T PF12895_consen   73 KYEEAIKALEKA   84 (84)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             CHHHHHHHHhcC
Confidence            999999999863

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.00  E-value=0.00049  Score=53.88  Aligned_cols=96  Identities=8%  Similarity=-0.086  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038914          154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTS  233 (570)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  233 (570)
                      ....+...+...|++++|..+|+.+...+       +-+..-|..|..++-..|++++|++.|......++ -|+..+..
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~  108 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHH
Confidence            33345555667777777777777777654       44566667777777777777777777777766653 36667777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          234 LICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       234 l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      +..++...|+.+.|.+.|+..+..
T Consensus       109 ag~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        109 AAECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777777766553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=0.0001  Score=63.32  Aligned_cols=98  Identities=18%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             HHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038914          376 LGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLE  455 (570)
Q Consensus       376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  455 (570)
                      .-+.+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence            33556677777777777777653 4456666666677777777777777776666554 344566777777777777777


Q ss_pred             HHHHHHHhhhhCCCCCChhhHH
Q 038914          456 IAWELFSSLPRVGLMADVVTYN  477 (570)
Q Consensus       456 ~A~~~~~~~~~~~~~~~~~~~~  477 (570)
                      +|.+.|++.++  +.|+..+|-
T Consensus       167 ~A~~aykKaLe--ldP~Ne~~K  186 (304)
T KOG0553|consen  167 EAIEAYKKALE--LDPDNESYK  186 (304)
T ss_pred             HHHHHHHhhhc--cCCCcHHHH
Confidence            77777777766  456655544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.98  E-value=0.0055  Score=53.63  Aligned_cols=187  Identities=11%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV  152 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  152 (570)
                      .+...+...+..+...|++++|++.|+++...  .|+......   +....|..+.+.+++++|...+++.++..+....
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~---a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQ---VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            35556667777888899999999999999887  444432211   1122223445567999999999998887432222


Q ss_pred             chHHHHHHHHHh--cC---------------C---hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHH
Q 038914          153 FTYNTLINGLCR--TG---------------H---TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKA  212 (570)
Q Consensus       153 ~~~~~l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  212 (570)
                      ..+...+.+.+.  .+               |   ..+|+..|+.+.+..        |+             ..-..+|
T Consensus       105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------P~-------------S~ya~~A  163 (243)
T PRK10866        105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--------PN-------------SQYTTDA  163 (243)
T ss_pred             hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--------cC-------------ChhHHHH
Confidence            233333333321  11               1   123444455554432        22             1223333


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          213 KELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ--GVQPNVVTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      ...+..+...    =...-..+...|.+.|.+..|..-++.+++.  +.+........++.+|.+.|..++|..+...+
T Consensus       164 ~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        164 TKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3333333221    0111123455566677777777767666654  11223344555666666777777766665544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.98  E-value=0.00069  Score=53.08  Aligned_cols=94  Identities=10%  Similarity=-0.046  Sum_probs=58.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914          407 TTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND  486 (570)
Q Consensus       407 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  486 (570)
                      ..+...+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|+..|....... +.|+..+-.++.++...
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence            344444556667777777776666554 4455556666666666677777777776666643 23455666666666667


Q ss_pred             CChhHHHHHHHHHHHC
Q 038914          487 GQMDKAHGLFLDMEAK  502 (570)
Q Consensus       487 g~~~~A~~~~~~~~~~  502 (570)
                      |+.+.|.+.|+..+..
T Consensus       117 G~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKALKAVVRI  132 (157)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            7777776666666553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.97  E-value=0.00022  Score=66.55  Aligned_cols=97  Identities=13%  Similarity=-0.022  Sum_probs=63.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh
Q 038914          410 IDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM  489 (570)
Q Consensus       410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  489 (570)
                      ...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..++.+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            344556677777777777776655 4556666667777777777777777777776642 22445666677777777777


Q ss_pred             hHHHHHHHHHHHCCCCCCHHH
Q 038914          490 DKAHGLFLDMEAKGLEPNFVI  510 (570)
Q Consensus       490 ~~A~~~~~~~~~~~~~p~~~~  510 (570)
                      ++|+..|+++++  +.|+...
T Consensus        87 ~eA~~~~~~al~--l~P~~~~  105 (356)
T PLN03088         87 QTAKAALEKGAS--LAPGDSR  105 (356)
T ss_pred             HHHHHHHHHHHH--hCCCCHH
Confidence            777777777776  3444333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00049  Score=59.68  Aligned_cols=121  Identities=10%  Similarity=0.046  Sum_probs=96.5

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhC
Q 038914           53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      ..++....-++.-++.+|  .|...|..|+.+|..+|++..|...|.++.+.  .|+. ..+..+-.++....    -..
T Consensus       136 ~~~~~l~a~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a----~~~  207 (287)
T COG4235         136 QEMEALIARLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQA----GQQ  207 (287)
T ss_pred             ccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc----CCc
Confidence            346777788888889999  89999999999999999999999999999988  4443 33333333332221    135


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      ...++..+|++++..+ +.|+.+...|...+.+.|++.+|...++.|.+..
T Consensus       208 ~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         208 MTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             ccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            7789999999999875 3467788888899999999999999999999975

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.96  E-value=1.8e-05  Score=45.15  Aligned_cols=33  Identities=45%  Similarity=0.961  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914          475 TYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN  507 (570)
Q Consensus       475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  507 (570)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            344444444444444444444444444444443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=0.021  Score=55.27  Aligned_cols=204  Identities=12%  Similarity=0.061  Sum_probs=128.4

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH----------HHHHHhcCCHHHHHHHHHH
Q 038914          149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI----------IDGLCKKGFVDKAKELFLK  218 (570)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~  218 (570)
                      .|.+..|..+.....+.-.++.|+..|-+...-.         .......|          ...-.--|++++|+++|-.
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld  759 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD  759 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence            5778889988888777777888888776654321         11111111          1222335889999999987


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914          219 MKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD  297 (570)
Q Consensus       219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  297 (570)
                      +-.++         ..+..+.+.|+|-.+.++++.--.. ....-..+++.+...++....|++|.+.|...-..     
T Consensus       760 ~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----  825 (1189)
T KOG2041|consen  760 ADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----  825 (1189)
T ss_pred             cchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----
Confidence            76652         2456677888888777776532110 00112356788888888888899998888764321     


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914          298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG  377 (570)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  377 (570)
                          ...+.++.+..++++-+.+.+.+.     .+....-.+..++.+.|.-++|.+.+-+-..    |     ...+..
T Consensus       826 ----e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~t  887 (1189)
T KOG2041|consen  826 ----ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHT  887 (1189)
T ss_pred             ----HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHH
Confidence                234666666666666655554443     3555667777888888888888777654321    1     234556


Q ss_pred             HhhcCCHHHHHHHHHH
Q 038914          378 LFEVHQVEHALKLFDE  393 (570)
Q Consensus       378 ~~~~~~~~~a~~~~~~  393 (570)
                      |...++|.+|.++-+.
T Consensus       888 Cv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  888 CVELNQWGEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6677777777766554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.95  E-value=0.00025  Score=66.11  Aligned_cols=123  Identities=10%  Similarity=0.047  Sum_probs=75.0

Q ss_pred             CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 038914          364 IRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN--HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSY  441 (570)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  441 (570)
                      .+.+...+..++..+....+.+.+..++-.....  ....-..+..++++.|...|..+.++.++..=...|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3445555666666666666666666666666543  11122334456667777777777777777666666767777777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND  486 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  486 (570)
                      +.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777777766666555455555555444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.95  E-value=0.00033  Score=53.94  Aligned_cols=93  Identities=16%  Similarity=0.094  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHH
Q 038914          441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFN  512 (570)
Q Consensus       441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~  512 (570)
                      +..++..+...|++++|...|..+.+..  |+    ...+..++.++...|++++|...++.+...  .|+    ..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~   80 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence            3444555566666666666666665531  22    234445666666666666666666666553  122    34455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          513 TLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       513 ~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      .+..++...|++++|...++++.+.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHH
Confidence            5556666666666666666666644

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.94  E-value=1.9e-05  Score=44.67  Aligned_cols=32  Identities=34%  Similarity=0.649  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 038914          475 TYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP  506 (570)
Q Consensus       475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  506 (570)
                      +|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44444444444444444444444444444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.94  E-value=9.7e-05  Score=68.86  Aligned_cols=91  Identities=10%  Similarity=0.007  Sum_probs=74.3

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNG  124 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  124 (570)
                      |...+..|++++|+..|+.+++.+|  .+...|..++.++...|++++|+..+++++..  .|+ ...+..+-.++.   
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~---   81 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACM---   81 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHH---
Confidence            3444568899999999999999999  78899999999999999999999999999987  453 333333333443   


Q ss_pred             CcchhhCCHHHHHHHHHHHHhcC
Q 038914          125 SSLCVESRIMEAAALFTKLRVFG  147 (570)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~~~~~~  147 (570)
                          ..|++++|+..|++.+..+
T Consensus        82 ----~lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         82 ----KLEEYQTAKAALEKGASLA  100 (356)
T ss_pred             ----HhCCHHHHHHHHHHHHHhC
Confidence                4579999999999999873

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.93  E-value=2.3e-05  Score=55.80  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=55.6

Q ss_pred             hCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914          130 ESRIMEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF  208 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  208 (570)
                      +|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.+++. .+.+       +.+......+..++.+.|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHHHHHHHHTT-
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHHHHHHHHhCC
Confidence            46888888888888876431 1334455578888888888888888887 3322       2234555566788888888


Q ss_pred             HHHHHHHHHH
Q 038914          209 VDKAKELFLK  218 (570)
Q Consensus       209 ~~~a~~~~~~  218 (570)
                      +++|+++|++
T Consensus        74 y~eAi~~l~~   83 (84)
T PF12895_consen   74 YEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888888875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.92  E-value=0.00019  Score=52.63  Aligned_cols=92  Identities=13%  Similarity=0.106  Sum_probs=48.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN  521 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  521 (570)
                      ..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++...... +.+..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            334445555555666665555555431 2222445555555555566666666665555532 22334555555555566


Q ss_pred             CCHHHHHHHHHHHH
Q 038914          522 NETSKVIELLHRMD  535 (570)
Q Consensus       522 g~~~~a~~~~~~~~  535 (570)
                      |++++|...+++..
T Consensus        82 ~~~~~a~~~~~~~~   95 (100)
T cd00189          82 GKYEEALEAYEKAL   95 (100)
T ss_pred             HhHHHHHHHHHHHH
Confidence            66666666665554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.92  E-value=0.00022  Score=52.28  Aligned_cols=94  Identities=19%  Similarity=0.205  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914          155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL  234 (570)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (570)
                      +..++..+...|++++|+..++.+.+..       +.+...+..+..++...|++++|.+.++...... +.+..++..+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~   74 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNL   74 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHH
Confidence            3445555566666666666666666543       2233555556666666666666666666665542 2233455555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 038914          235 ICGFCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       235 ~~~~~~~~~~~~a~~~~~~~~~  256 (570)
                      ...+...|++++|...+....+
T Consensus        75 ~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          75 GLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHc
Confidence            5666666666666666655544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.92  E-value=0.00051  Score=52.89  Aligned_cols=95  Identities=14%  Similarity=0.050  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHH
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELN---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYN  477 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~  477 (570)
                      ++...+..+...|++++|...+..+.... +.+   ...+..+..++...|+++.|...|+.+....  |+    ..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~   80 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence            34455566667777777777777776543 111   2345556777777777777777777776532  22    34566


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          478 IMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       478 ~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      .++.++...|++++|...++++.+.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHH
Confidence            6677777777777777777777764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.91  E-value=5.9e-05  Score=68.05  Aligned_cols=179  Identities=10%  Similarity=0.065  Sum_probs=109.6

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcC----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMR----PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNI  115 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  115 (570)
                      ..+...|......|++++|...|.++....    ........|...+.++. ..++++|+..|+++...-.  ....+..
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~--~~G~~~~  112 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYR--EAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHH--HCT-HHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHH--hcCcHHH
Confidence            344444444445678999999998876431    10122234555555554 4499999999999876521  2222333


Q ss_pred             HHHHHHhcCCcchhh-CCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 038914          116 LINCFLQNGSSLCVE-SRIMEAAALFTKLRVF----GCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC  189 (570)
Q Consensus       116 ~l~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  189 (570)
                      .-..+.+.|..+... |++++|++.|++..+.    +.+. -..++..+...+.+.|++++|+++|+++.....+... .
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l-~  191 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL-L  191 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT-T
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc-c
Confidence            445555555666667 8999999999998764    2111 1234667888899999999999999998875411100 1


Q ss_pred             CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          190 KPDTV-TYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       190 ~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      +.++. .+...+-++...|+...|...+++....
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            12222 3344555777789999999999998765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.90  E-value=0.00067  Score=56.17  Aligned_cols=101  Identities=8%  Similarity=-0.037  Sum_probs=55.1

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL--YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP  150 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  150 (570)
                      .....+..++..+...|++++|+..|+++++....+..  ..+..+.       ..+...|++++|...+++.+... +.
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~~-p~  104 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMG-------IIYASNGEHDKALEYYHQALELN-PK  104 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence            44455666666777777777777777777655322221  1222222       22333457777777777766652 22


Q ss_pred             CcchHHHHHHHHHhcCC--------------hhHHHHHHHHHHhC
Q 038914          151 DVFTYNTLINGLCRTGH--------------TIVALNLFEEMANG  181 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~  181 (570)
                      +...+..+..++...|+              +++|.+.++++...
T Consensus       105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~  149 (172)
T PRK02603        105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL  149 (172)
T ss_pred             cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence            34445555566655554              35555566555543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.89  E-value=0.0016  Score=63.57  Aligned_cols=141  Identities=11%  Similarity=0.007  Sum_probs=83.8

Q ss_pred             CCCHHhHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch--hhCCHHHHHHHHHHHH
Q 038914           72 RPPVTSFNILFGCLAK--T---KHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC--VESRIMEAAALFTKLR  144 (570)
Q Consensus        72 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~A~~~~~~~~  144 (570)
                      +.+..+|...+++...  .   +....|+.+|+++++.  .|+.......+..+......+.  ...+...+.+..++..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            4788888877776433  3   3377999999999998  6765433332221111100011  1122344444444433


Q ss_pred             hcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          145 VFG-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       145 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      ... .+.+..++..+.......|++++|...++++...+        |+...|..+...+...|+.++|.+.+++....
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            321 12334556666555556677777777777777743        56677777777777777777777777777664

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.87  E-value=3.2e-05  Score=44.13  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          510 IFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDA  543 (570)
Q Consensus       510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  543 (570)
                      +|+.++.+|.+.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6899999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.86  E-value=0.00039  Score=62.43  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=66.9

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK-NGYIVKAVELFRTLRILKYELNIVSYNCLIDGL  448 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  448 (570)
                      +|..++...-+.+..+.|..+|.+..+.+ .....+|...+..-.. .++.+.|..+|+...+. ++.+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45555555555556666666666665332 2233344444433223 34444466666665544 244555566666666


Q ss_pred             HhcCCHHHHHHHHHhhhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          449 CKHGRLEIAWELFSSLPRVGLMADV---VTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       449 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      ...++.+.|..+|++.+.. +.++.   ..|...+..-.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666553 22222   3555555555556666666666666555

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.85  E-value=0.0093  Score=47.61  Aligned_cols=157  Identities=14%  Similarity=0.137  Sum_probs=106.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914          158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG  237 (570)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  237 (570)
                      +..+..+.=|++....-..+-..        ..|++..-..|..++.+.|+..+|...|++...--+.-|......+.++
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~--------~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A  133 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELA--------IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA  133 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHh--------hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence            33444444455544443333333        3577777778888888888888888888888775555677788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038914          238 FCYANDWNEAKHLFIEMMDQGVQ-PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDR  316 (570)
Q Consensus       238 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  316 (570)
                      ....+++..|...++++.+.... .++.....+.+.+...|.+..|+..|+.....  -|+..........+.+.|+.++
T Consensus       134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence            88888888888888888775311 12344556677888888888888888888865  4555554455566667776666


Q ss_pred             HHHHHHHH
Q 038914          317 ARELFVSM  324 (570)
Q Consensus       317 a~~~~~~~  324 (570)
                      +..-+..+
T Consensus       212 a~aq~~~v  219 (251)
T COG4700         212 ANAQYVAV  219 (251)
T ss_pred             HHHHHHHH
Confidence            65444433

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.83  E-value=4.1e-05  Score=43.26  Aligned_cols=33  Identities=18%  Similarity=0.423  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038914          509 VIFNTLMLGFIRNNETSKVIELLHRMDMRNVMP  541 (570)
Q Consensus       509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p  541 (570)
                      .+|+.++.+|.+.|+++.|..++++|.+.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999987

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.83  E-value=0.00051  Score=56.68  Aligned_cols=118  Identities=9%  Similarity=-0.050  Sum_probs=75.2

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI  133 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  133 (570)
                      ++..+...+..+.+..+.......|..++..+...|++++|+..|++++.....+...     ..++...|..+...|++
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~-----~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR-----SYILYNIGLIHTSNGEH   88 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHHcCCH
Confidence            4566666676665555534456677888888889999999999999998763222111     11222333344456799


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHH-------hcCChhHHHHHHHH
Q 038914          134 MEAAALFTKLRVFGCEPDVFTYNTLINGLC-------RTGHTIVALNLFEE  177 (570)
Q Consensus       134 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~  177 (570)
                      ++|+..+++..... +....++..+..++.       +.|+++.|+..+++
T Consensus        89 ~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         89 TKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            99999999988763 223445666666666       66676655444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.80  E-value=0.00054  Score=56.50  Aligned_cols=93  Identities=10%  Similarity=0.040  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 038914          439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLM  515 (570)
Q Consensus       439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~  515 (570)
                      ..+..++..+...|++++|...|++.......+  ...++..++.++...|++++|+..++++...  .| ...++..+.
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la  113 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence            344555556666667777777666665532111  1235666666677777777777777666653  23 234444444


Q ss_pred             HHHH-------hcCCHHHHHHHHHH
Q 038914          516 LGFI-------RNNETSKVIELLHR  533 (570)
Q Consensus       516 ~~~~-------~~g~~~~a~~~~~~  533 (570)
                      ..+.       ..|++++|...+++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHH
Confidence            4444       66676655444444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.79  E-value=0.00052  Score=51.84  Aligned_cols=99  Identities=19%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC--Ccch
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP--DVFT  154 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~  154 (570)
                      +.+.++.++-..|+.++|+.+|++++..|.......     .++...|..+...|++++|+.++++.....+.+  +...
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~-----~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l   77 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRR-----RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL   77 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence            455677788889999999999999999876543221     222233445556679999999999888752111  1122


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038914          155 YNTLINGLCRTGHTIVALNLFEEMAN  180 (570)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~~~~  180 (570)
                      ...+..++...|+.++|++++-....
T Consensus        78 ~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   78 RVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33344567788999999999877654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.79  E-value=0.0024  Score=62.42  Aligned_cols=62  Identities=11%  Similarity=0.022  Sum_probs=37.2

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      ...|..+.......|++++|...+++++..  .|+...|..+...+...|+.++|...+++...
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345555555555556666666666666663  35555666666666666666666666666653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.78  E-value=0.0046  Score=52.59  Aligned_cols=173  Identities=16%  Similarity=0.093  Sum_probs=104.3

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914           42 FKSSGEGDITTITPNDALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCF  120 (570)
Q Consensus        42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  120 (570)
                      +...|...+..|++++|...|+.+..+.|.. -...+...++.++.+.++++.|+...++.++..+......|...|.++
T Consensus        37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            3345666678999999999999999988843 335577788889999999999999999999986655555666666665


Q ss_pred             HhcCC---cchhhCCHHHHHHHHHHHHhcCCCCCcc------h------------HHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          121 LQNGS---SLCVESRIMEAAALFTKLRVFGCEPDVF------T------------YNTLINGLCRTGHTIVALNLFEEMA  179 (570)
Q Consensus       121 ~~~~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~------------~~~l~~~~~~~g~~~~A~~~~~~~~  179 (570)
                      +..-.   ....+....+|..-|..++.+  -||+.      .            =..+.+.|.+.|.+..|..-++.+.
T Consensus       117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~  194 (254)
T COG4105         117 SYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL  194 (254)
T ss_pred             HHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            54332   222233344444555555544  22221      1            0012234555666666666666666


Q ss_pred             hCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          180 NGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMK  220 (570)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  220 (570)
                      +..+.    .+.....+..+..+|...|..++|...-.-+.
T Consensus       195 e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         195 ENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             hcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            54311    11112344455555666666665555544333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.77  E-value=0.00043  Score=58.92  Aligned_cols=163  Identities=11%  Similarity=0.073  Sum_probs=102.8

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ-  122 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  122 (570)
                      .|...+..|++.+|+..|+.+....|.. ....+...++.++.+.|+++.|+..+++.++..+......+...+.+.+. 
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            3444556889999999999999987743 33567889999999999999999999999988433222222222222221 


Q ss_pred             --cCCc---chhhCCHHHHHHHHHHHHhcCCCCCcc-h-----------------HHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          123 --NGSS---LCVESRIMEAAALFTKLRVFGCEPDVF-T-----------------YNTLINGLCRTGHTIVALNLFEEMA  179 (570)
Q Consensus       123 --~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~-~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~  179 (570)
                        ....   ...++...+|...|+.++..-  |+.. +                 -..+...|.+.|.+..|...++.+.
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~  168 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI  168 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence              1111   334556778999999988762  3321 1                 0113355778999999999999999


Q ss_pred             hCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHH
Q 038914          180 NGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAK  213 (570)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  213 (570)
                      +..+.    .+....+...++.+|.+.|..+.+.
T Consensus       169 ~~yp~----t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  169 ENYPD----TPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHSTT----SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHCCC----CchHHHHHHHHHHHHHHhCChHHHH
Confidence            87521    1111345677888888888877543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.77  E-value=0.00064  Score=63.47  Aligned_cols=124  Identities=11%  Similarity=0.135  Sum_probs=96.5

Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh
Q 038914          398 HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK--YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT  475 (570)
Q Consensus       398 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  475 (570)
                      +.+.+...+..++..+....+.+.+..++.+.....  ...-..+..++++.|...|..++++.+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            345666777778888777788888888888877542  222345566889999999999999999999899999999999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914          476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN  521 (570)
Q Consensus       476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  521 (570)
                      ++.|+..+.+.|++..|.++...|..++.-.+..|+..-+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999988888776666666665555555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.73  E-value=0.0018  Score=53.62  Aligned_cols=88  Identities=13%  Similarity=0.035  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELN--IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG  482 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  482 (570)
                      .+..+...+...|++++|...|+++......+.  ...+..+..++...|++++|...+++..+.. +.+...+..++.+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            444555555566666666666666654321111  2445555566666666666666666665531 2233444555555


Q ss_pred             HHhcCChhHHH
Q 038914          483 LCNDGQMDKAH  493 (570)
Q Consensus       483 ~~~~g~~~~A~  493 (570)
                      +...|+...+.
T Consensus       116 ~~~~g~~~~a~  126 (172)
T PRK02603        116 YHKRGEKAEEA  126 (172)
T ss_pred             HHHcCChHhHh
Confidence            55555544433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.73  E-value=0.029  Score=50.58  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=101.3

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC-CHHHHHHHHHHHHhc----C----CCCCc----
Q 038914           86 AKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES-RIMEAAALFTKLRVF----G----CEPDV----  152 (570)
Q Consensus        86 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~----~----~~~~~----  152 (570)
                      .++|+++.|..++.++.......++.....+-..|...|......+ ++++|..++++..+.    +    ..++.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4678888888888888765434455566677777777787777778 999998888876653    1    11222    


Q ss_pred             -chHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          153 -FTYNTLINGLCRTGHTI---VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA  228 (570)
Q Consensus       153 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  228 (570)
                       .++..++.++...+..+   +|..+++.+....       +.....+..-+.++.+.++.+.+.+.+.+|... +.-..
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e  155 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSE  155 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-ccccc
Confidence             24566667777666543   4566666665543       223555656667777778888888888888775 22122


Q ss_pred             HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCC
Q 038914          229 VTYTSLICGF---CYANDWNEAKHLFIEMMDQGVQPN  262 (570)
Q Consensus       229 ~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~  262 (570)
                      ..+..++..+   .. .....+...+..++.....|.
T Consensus       156 ~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  156 SNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             chHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence            3344433333   22 223445555555544333333

It is also involved in sporulation [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.71  E-value=2.2e-05  Score=53.43  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 038914           42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNST  104 (570)
Q Consensus        42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  104 (570)
                      +...|......|++++|+..|.++++.+|  .+..+|..++.++...| ++++|++.++++++.
T Consensus         6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    6 WYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            33445555678899999999999999998  78999999999999999 799999999999875

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0034  Score=54.63  Aligned_cols=101  Identities=12%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHH
Q 038914          435 ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAKGLEPNFVIF  511 (570)
Q Consensus       435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~  511 (570)
                      |-|...|..|..+|...|+++.|..-|.+..+.. .++...+..+..++..+.   ...++..+|++++... +-|..+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            5666777777777777777777777777776642 344555666666554332   4456677777777642 2245555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          512 NTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       512 ~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ..|...+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            56666777777777777777777754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.65  E-value=0.0019  Score=58.07  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 038914          334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE-VHQVEHALKLFDEMRRNHVAANTYIYTTFIDG  412 (570)
Q Consensus       334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  412 (570)
                      .+|..+++...+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. ++.+...+...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467888888888888999999999998542 2244555555555334 56777799999988876 46677888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914          413 LCKNGYIVKAVELFRTLRILKYELNI---VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMI  480 (570)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  480 (570)
                      +...++.+.|..+|++.... ++++.   ..|...+..-.+.|+.+.+.++.+++.+.  .|+...+..++
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~  147 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS  147 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence            89999999999999998765 23222   47888888888889999999999888874  44433333333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.63  E-value=0.005  Score=52.47  Aligned_cols=68  Identities=13%  Similarity=0.083  Sum_probs=39.0

Q ss_pred             CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914           74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF  146 (570)
Q Consensus        74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (570)
                      +...+...+..+...|++.+|++.|+++....  |++......   ....+..+.+.|++++|...+++.++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A---~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQA---QLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHH---HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44566677777888888888888888888763  332211111   111112334456788888888777765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.62  E-value=0.0048  Score=46.66  Aligned_cols=87  Identities=18%  Similarity=0.103  Sum_probs=39.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHHHHHHHHH
Q 038914          411 DGLCKNGYIVKAVELFRTLRILKYELN--IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYNIMIHGLC  484 (570)
Q Consensus       411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~  484 (570)
                      .++-..|+.++|+.+|++....+....  ...+..+..++...|++++|..++++....  .|+    ......+..++.
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence            344445555555555555555443222  223344445555555555555555555442  122    111122233444


Q ss_pred             hcCChhHHHHHHHHH
Q 038914          485 NDGQMDKAHGLFLDM  499 (570)
Q Consensus       485 ~~g~~~~A~~~~~~~  499 (570)
                      ..|+.++|++.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            555555555554443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.61  E-value=0.0012  Score=47.88  Aligned_cols=79  Identities=14%  Similarity=0.301  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHH
Q 038914          197 TTIIDGLCKKGFVDKAKELFLKMKDENI-NPNAVTYTSLICGFCYAN--------DWNEAKHLFIEMMDQGVQPNVVTFT  267 (570)
Q Consensus       197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  267 (570)
                      ...|..+...+++...-.+|+.++..|+ .|+..+|+.++...++..        +.-..+.+|+.|+..+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4455556666778888888888887777 677888887777665543        2334556666666666666766666


Q ss_pred             HHHHHHHh
Q 038914          268 VIMDELCK  275 (570)
Q Consensus       268 ~l~~~~~~  275 (570)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            66665543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.57  E-value=0.084  Score=50.71  Aligned_cols=134  Identities=11%  Similarity=0.080  Sum_probs=69.0

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchH
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTY  155 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  155 (570)
                      ..|..++.---.....+.+...|..++..  .|-..-|-.-.+.+-      .+.|..+.+.++|++.+.. ++.++..|
T Consensus        46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E------~klg~~~~s~~Vfergv~a-ip~SvdlW  116 (577)
T KOG1258|consen   46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYE------YKLGNAENSVKVFERGVQA-IPLSVDLW  116 (577)
T ss_pred             cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHH------HHhhhHHHHHHHHHHHHHh-hhhHHHHH
Confidence            34444443333333335555666666644  444333322222221      2235666777777766653 34445555


Q ss_pred             HHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          156 NTLINGLC-RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       156 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      ......+. ..|+.+...+.|+.+....+.    ---....|...+..-..++++.....+++++++.
T Consensus       117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~----dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  117 LSYLAFLKNNNGDPETLRDLFERAKSYVGL----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhccc----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            55444433 346666666666666654321    0112445666666666667777777777777664

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.55  E-value=0.00039  Score=46.48  Aligned_cols=54  Identities=15%  Similarity=0.201  Sum_probs=21.6

Q ss_pred             HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .+...|++++|...|+++++.. +-+...+..++.++...|++++|..+|+++++
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444444444444444431 11233344444444444444444444444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.54  E-value=0.066  Score=48.84  Aligned_cols=126  Identities=10%  Similarity=0.073  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914          404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL  483 (570)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  483 (570)
                      .+.+..+.-+...|+...|.++-.+..    -|+...|...+.+++..++|++-.++...      ..++..|...+.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            355556667778899888888876664    57888999999999999999988876543      23457888999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038914          484 CNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVK  555 (570)
Q Consensus       484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  555 (570)
                      ...|+..+|..+..+     ++     +..-+..|.+.|++.+|.+..-+..      |...+..+.+.+..
T Consensus       248 ~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~  303 (319)
T PF04840_consen  248 LKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG  303 (319)
T ss_pred             HHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence            999999999988766     12     2445667889999999988766553      45555555554433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.52  E-value=0.00049  Score=47.34  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAY  113 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  113 (570)
                      +..++++.|+..++.++..+|  .++..|...+.++.+.|++++|.+.|+++++.  .|+....
T Consensus         6 ~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~   65 (73)
T PF13371_consen    6 LQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA   65 (73)
T ss_pred             HhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence            457899999999999999999  78999999999999999999999999999988  4554443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.52  E-value=0.00015  Score=39.85  Aligned_cols=26  Identities=38%  Similarity=0.756  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          476 YNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       476 ~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      |+.++.+|++.|++++|.++|++|.+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            44444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.52  E-value=0.0019  Score=46.85  Aligned_cols=76  Identities=14%  Similarity=0.382  Sum_probs=42.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038914          480 IHGLCNDGQMDKAHGLFLDMEAKGL-EPNFVIFNTLMLGFIRNN--------ETSKVIELLHRMDMRNVMPDASTLSIVV  550 (570)
Q Consensus       480 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~  550 (570)
                      +..|...+++...-.+|+.+.+.|+ -|+..+|+.++.+..+..        +.-+.+.+|+.|+..+++|+.++|..++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3344444566666666666655555 555666655555443321        1224556666666666666666666666


Q ss_pred             HHHHc
Q 038914          551 DLLVK  555 (570)
Q Consensus       551 ~~~~~  555 (570)
                      ..+.+
T Consensus       112 ~~Llk  116 (120)
T PF08579_consen  112 GSLLK  116 (120)
T ss_pred             HHHHH
Confidence            66543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.50  E-value=0.00057  Score=60.15  Aligned_cols=90  Identities=12%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             CCChhHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914           52 TITPNDALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE  130 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  130 (570)
                      .|++++|+..|+..++..|..+ ...++..++.++...|++++|+..|+.+++.  .|+.......   +.+.|..+...
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA---l~klg~~~~~~  230 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA---MFKVGVIMQDK  230 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH---HHHHHHHHHHc
Confidence            4678888888888888777221 1467778888888888888888888888766  3432221111   11112223334


Q ss_pred             CCHHHHHHHHHHHHhc
Q 038914          131 SRIMEAAALFTKLRVF  146 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~  146 (570)
                      |+.++|...|+++++.
T Consensus       231 g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        231 GDTAKAKAVYQQVIKK  246 (263)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            6778888888777765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.48  E-value=0.00043  Score=46.97  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=28.0

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNN-ETSKVIELLHRMD  535 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~  535 (570)
                      .+|..++..+...|++++|+..|.+.++.. +.+...|..+..++...| ++++|++.+++.+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            344444444455555555555555544431 112334444444444444 3455555554444

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.47  E-value=0.077  Score=47.97  Aligned_cols=286  Identities=13%  Similarity=0.063  Sum_probs=149.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHH
Q 038914          241 ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDEL--CKNGKMDGASRLLELMILRGVKPDTS--TYNTLIDGYCLTGKIDR  316 (570)
Q Consensus       241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~  316 (570)
                      .|+-..|.++-.+..+. +..|......++.+.  .-.|+++.|.+-|+.|...   |...  -...|.-...+.|+.+.
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence            34555555554443322 222333333343332  2346666666666666642   1111  11222222335566666


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhh--HHHHHHHHh---hcCCHHHHHHH
Q 038914          317 ARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKG-IRPTVVT--YHTLFLGLF---EVHQVEHALKL  390 (570)
Q Consensus       317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~a~~~  390 (570)
                      |...-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..-  -..|+.+-.   -..+...|...
T Consensus       173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            666666555442 2234556666667777777777777776655432 1222211  111111111   12334455554


Q ss_pred             HHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-C
Q 038914          391 FDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV-G  468 (570)
Q Consensus       391 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~  468 (570)
                      -.+..+.  .|+.. .-..-..++.+.|+..++-.+++.+-+..  |.+.++..  ..+.+.|+  .+..-++...+. .
T Consensus       252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~s  323 (531)
T COG3898         252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKRAKKLES  323 (531)
T ss_pred             HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHHHHHHHh
Confidence            4444443  33322 22234466778888888888888887764  44433322  23344444  333333322210 1


Q ss_pred             CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCC
Q 038914          469 LMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI-RNNETSKVIELLHRMDMRNVMP  541 (570)
Q Consensus       469 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p  541 (570)
                      ++|| ..+...+..+....|++..|..--+....  ..|....|..+.+.-. ..|+-.++..++-+..+..-.|
T Consensus       324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            3343 45666777777788888888777666665  5677777777766544 3488888888888887544333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.47  E-value=0.00084  Score=45.36  Aligned_cols=51  Identities=25%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      ..|++++|+.+|+.+.... |.+..++..++.+|.+.|++++|..+++.+..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555555555555443 33455555555555555555555555555555

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.013  Score=50.86  Aligned_cols=153  Identities=16%  Similarity=0.086  Sum_probs=101.3

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG  124 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (570)
                      .+......|++.+|...|..+++..|  .+..+-..++.+|...|+.+.|..++..+..............-+..+.+. 
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa-  216 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA-  216 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-
Confidence            34455678899999999999999998  678888999999999999999999999887652211111111112222222 


Q ss_pred             CcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914          125 SSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC  204 (570)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  204 (570)
                            ....+...+-.++...  +.|...-..+...+...|+.+.|++.+-.+.+.+.     .-.|...-..|+..+.
T Consensus       217 ------a~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-----~~~d~~~Rk~lle~f~  283 (304)
T COG3118         217 ------AATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-----GFEDGEARKTLLELFE  283 (304)
T ss_pred             ------hcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-----cccCcHHHHHHHHHHH
Confidence                  1333333333333321  23666666788888899999999998888887653     2344566667777766


Q ss_pred             hcCCHHHHH
Q 038914          205 KKGFVDKAK  213 (570)
Q Consensus       205 ~~g~~~~a~  213 (570)
                      -.|.-+.+.
T Consensus       284 ~~g~~Dp~~  292 (304)
T COG3118         284 AFGPADPLV  292 (304)
T ss_pred             hcCCCCHHH
Confidence            666444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.44  E-value=0.085  Score=47.71  Aligned_cols=292  Identities=11%  Similarity=0.071  Sum_probs=168.0

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILF--GCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ  122 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (570)
                      .|.-....|+-..|.+.-.+..+.-.  .+......++  ++-.-.|+++.|.+-|+.|+.   .|....... -..|..
T Consensus        90 tGliAagAGda~lARkmt~~~~~lls--sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGL-RgLyle  163 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLS--SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGL-RGLYLE  163 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhH-HHHHHH
Confidence            45555678899999999888765433  2333333333  455668999999999999997   354433221 111111


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhh--HHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVT--YTTII  200 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~  200 (570)
                          -...|..+.|..+-+.....- +.-...+..++...|..||++.|+++++.-.....     +.++..-  -..|+
T Consensus       164 ----Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~rAvLL  233 (531)
T COG3898         164 ----AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSRAVLL  233 (531)
T ss_pred             ----HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHHHHHH
Confidence                123578889998888877652 22356788899999999999999999998776542     3344321  12222


Q ss_pred             HHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038914          201 DGLCK---KGFVDKAKELFLKMKDENINPNAVT-YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN  276 (570)
Q Consensus       201 ~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (570)
                      .+-..   .-+...|.+.-.+..+  +.|+... -..-...+.+.|+..++-.+++.+-+....|+..    .+..+.+.
T Consensus       234 tAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~  307 (531)
T COG3898         234 TAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARS  307 (531)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcC
Confidence            22111   1234444444444443  2344322 2233466777788888888887777764444432    12223344


Q ss_pred             CChhHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHHHHH
Q 038914          277 GKMDGASRLLELMILR-GVKP-DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK-TKDVEEGL  353 (570)
Q Consensus       277 g~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  353 (570)
                      |+  .++.-+++..+. .++| +......+.++....|++..|..--+.....  .|....|..|...-.. .||-.++.
T Consensus       308 gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR  383 (531)
T COG3898         308 GD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVR  383 (531)
T ss_pred             CC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHH
Confidence            43  233333322211 1222 3344555666666777777766665555554  3455556555554433 37777777


Q ss_pred             HHHHHHHhC
Q 038914          354 NLYRKMLSK  362 (570)
Q Consensus       354 ~~~~~~~~~  362 (570)
                      ..+-+....
T Consensus       384 ~wlAqav~A  392 (531)
T COG3898         384 QWLAQAVKA  392 (531)
T ss_pred             HHHHHHhcC
Confidence            777766654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.14  Score=50.56  Aligned_cols=126  Identities=13%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW--NEAKHLFIEMMDQGVQPNVVTFTVIMDELCK  275 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (570)
                      .+++-+...+.+..|+++-..+...-.. +...|......+.+..+.  +++.+.+++=.+.... .-..|..+.+-...
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~  519 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQ  519 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHh
Confidence            3566677778888998888777543211 256677777777766432  2233333332222122 34567777777888


Q ss_pred             cCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          276 NGKMDGASRLLELMILRGVK----PDTSTYNTLIDGYCLTGKIDRARELFVSME  325 (570)
Q Consensus       276 ~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  325 (570)
                      .|+++-|..+++.=...+..    .+..-+...+.-+...|+.+....++-.+.
T Consensus       520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk  573 (829)
T KOG2280|consen  520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK  573 (829)
T ss_pred             cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            89999888877542221100    011123333444555566655555554443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.42  E-value=0.0025  Score=59.15  Aligned_cols=63  Identities=17%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPV---TSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      ..+...|..+...|++++|+..|+++++.+|  .+.   .+|+.++.+|...|++++|++.+++++..
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5555667777788999999999999999998  444   46999999999999999999999999986

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.41  E-value=0.001  Score=49.31  Aligned_cols=97  Identities=15%  Similarity=0.073  Sum_probs=80.0

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG  124 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (570)
                      .|-.+...|+++.|++.|.+++..-|  ....+||.-+.++.-+|+.++|++-++++++..-.. .   .....++...|
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-t---rtacqa~vQRg  122 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-T---RTACQAFVQRG  122 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-c---hHHHHHHHHHH
Confidence            34445567899999999999999988  788999999999999999999999999999874222 2   23445667777


Q ss_pred             CcchhhCCHHHHHHHHHHHHhcC
Q 038914          125 SSLCVESRIMEAAALFTKLRVFG  147 (570)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~~~~~~  147 (570)
                      ..|...|+-+.|..-|+...+.|
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhC
Confidence            78888999999999999988876

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.40  E-value=0.00026  Score=38.84  Aligned_cols=30  Identities=20%  Similarity=0.533  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914          510 IFNTLMLGFIRNNETSKVIELLHRMDMRNV  539 (570)
Q Consensus       510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  539 (570)
                      +|+.++.+|.+.|++++|.+++++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            799999999999999999999999998774

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.07  Score=45.41  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914          337 SILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR  395 (570)
Q Consensus       337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  395 (570)
                      +.++.++...+.+.-....+.+.++...+-++.....++..-.+.|+.+.|...|++..
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve  239 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE  239 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            33444444444444444455544444333334444444444444455555544444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.36  E-value=0.0069  Score=53.43  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             HhcCCHHHHHHHHHhhhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 038914          449 CKHGRLEIAWELFSSLPRVGLMADV----VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLMLGFIR  520 (570)
Q Consensus       449 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~  520 (570)
                      .+.|++++|...|+.+++.  .|+.    ..+-.++.+|...|++++|...|+.+.+.  .|+    ...+..++.++..
T Consensus       154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~  229 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQD  229 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHH
Confidence            4456666666666666653  2332    34455666666666666666666666653  122    3344444555566


Q ss_pred             cCCHHHHHHHHHHHHh
Q 038914          521 NNETSKVIELLHRMDM  536 (570)
Q Consensus       521 ~g~~~~a~~~~~~~~~  536 (570)
                      .|++++|..+++++++
T Consensus       230 ~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        230 KGDTAKAKAVYQQVIK  245 (263)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.36  E-value=0.00029  Score=49.29  Aligned_cols=69  Identities=14%  Similarity=0.052  Sum_probs=44.0

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH
Q 038914           75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLR  144 (570)
Q Consensus        75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (570)
                      ..+++.++.++...|++++|++.|++++.. ..........+...+...|..+...|++++|++.+++..
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            467889999999999999999999999864 111111222334444444455555566666666666554

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.21  Score=49.32  Aligned_cols=377  Identities=12%  Similarity=0.083  Sum_probs=210.7

Q ss_pred             HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHh--------cCCCCCcchHH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 038914          114 NILINCFLQNGSSLCVESRIMEAAALFTKLRV--------FGCEPDVFTYN-----TLINGLCRTGHTIVALNLFEEMAN  180 (570)
Q Consensus       114 ~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~  180 (570)
                      ..++++ +..|+.+.+..++++-..+...+.-        .|++.+..-|.     .++.-+...+.+..|+++...+..
T Consensus       387 K~LL~A-AsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~  465 (829)
T KOG2280|consen  387 KSLLRA-ASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL  465 (829)
T ss_pred             HHHHHH-HhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC
Confidence            344443 4556677777788877777665542        35554444343     356667788999999999888765


Q ss_pred             CCCCCCcccCCChhhHHHHHHHHHhcCC--HHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          181 GNGEIGVVCKPDTVTYTTIIDGLCKKGF--VDKAKELF-LKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      ..      ... ...|......+.+..+  -+++.+.+ +++... . -....|..+.......|+.+-|..+++.=...
T Consensus       466 p~------~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~  536 (829)
T KOG2280|consen  466 PE------SQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRS  536 (829)
T ss_pred             cc------ccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCc
Confidence            33      122 5677777777776632  22333333 333322 2 24556888888888999999998887642221


Q ss_pred             CCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          258 GVQ----PNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDV  333 (570)
Q Consensus       258 ~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  333 (570)
                      +..    .+..-+...+.-+...|+.+-...++-.+...-   +...      .+....+...|..+|.+..+..   +.
T Consensus       537 ~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~  604 (829)
T KOG2280|consen  537 GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQ---DR  604 (829)
T ss_pred             cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhh---ch
Confidence            110    111223334444555566655555555544320   1111      1112234455666666654421   11


Q ss_pred             hhHHHHHHHHHhcCCHHHHHH-HHHHHHhC-CCCCChhhHHHHHHHHhhcCCHH----------HHHHHHHHHHh-CCCC
Q 038914          334 VSYSILINGYCKTKDVEEGLN-LYRKMLSK-GIRPTVVTYHTLFLGLFEVHQVE----------HALKLFDEMRR-NHVA  400 (570)
Q Consensus       334 ~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~  400 (570)
                         ..+-..|....+...+-. .++..... .+.+-..........+.+.....          .-+.+.+.+.. .+..
T Consensus       605 ---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~  681 (829)
T KOG2280|consen  605 ---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGS  681 (829)
T ss_pred             ---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence               111122222222222111 11111110 01111222333334444433311          11222222222 2222


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914          401 ANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMI  480 (570)
Q Consensus       401 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  480 (570)
                      ....+.+--+.-+...|+..+|.++-.++.    -||...|..-+.+++..+++++-+++-+...      .+.-|.-.+
T Consensus       682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV  751 (829)
T KOG2280|consen  682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV  751 (829)
T ss_pred             cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence            333445555666778899999998887775    6888888888999999999998777765543      356778889


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM  534 (570)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  534 (570)
                      .+|.+.|+.++|.+++-+...     ..    ..+.+|.+.|++.+|.++.-+-
T Consensus       752 e~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  752 EACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             HHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHHh
Confidence            999999999999998866533     11    5667888889998888765443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.30  E-value=0.15  Score=47.29  Aligned_cols=446  Identities=13%  Similarity=0.128  Sum_probs=235.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch
Q 038914           81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPD------LYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT  154 (570)
Q Consensus        81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  154 (570)
                      -+-.+.+++++.+|.++|.+..... ..+      ...-..+++++..        .+.+.-...+..+.+.  .| ...
T Consensus        12 Qgf~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl--------~nld~Me~~l~~l~~~--~~-~s~   79 (549)
T PF07079_consen   12 QGFILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL--------NNLDLMEKQLMELRQQ--FG-KSA   79 (549)
T ss_pred             hhHHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH--------hhHHHHHHHHHHHHHh--cC-Cch
Confidence            3446778999999999999987652 112      1223355666554        3666666666666554  22 334


Q ss_pred             HHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCcccCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          155 YNTLING--LCRTGHTIVALNLFEEMANGNGEIGVVCKP-----------DTVTYTTIIDGLCKKGFVDKAKELFLKMKD  221 (570)
Q Consensus       155 ~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  221 (570)
                      |-.+..+  +.+.+++.+|++.+......-...   -+|           |...-+..+.++...|++.++..+++++..
T Consensus        80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE  156 (549)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            4445444  357899999999887766541000   011           112224567788889999999999888876


Q ss_pred             CC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914          222 EN----INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ---GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV  294 (570)
Q Consensus       222 ~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  294 (570)
                      .=    ..-+..+|+.++-.+.+.        .|-++.+.   .+-|+   |..++-.|.+.=.      .++...-..+
T Consensus       157 ~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~  219 (549)
T PF07079_consen  157 RLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKF  219 (549)
T ss_pred             HHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhh
Confidence            42    235777888766555433        33333222   22222   3334444433211      1111000012


Q ss_pred             CCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----C
Q 038914          295 KPDTSTYNTLIDGYCLTG--KIDRARELFVSMESNGCMHDV-VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----T  367 (570)
Q Consensus       295 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~  367 (570)
                      .|.......++....-..  ...--.++++.....-+.|+- -+...+..-+.+  +.+++..+-+.+....+.+    -
T Consensus       220 ~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~l  297 (549)
T PF07079_consen  220 IPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEEL  297 (549)
T ss_pred             CcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHH
Confidence            233333333333222111  112222333333333223332 222333333333  4444444444433321110    2


Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHH-------HHHHHHh----cCCHHHHHHHHHHHHHcCCCC
Q 038914          368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTT-------FIDGLCK----NGYIVKAVELFRTLRILKYEL  436 (570)
Q Consensus       368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~  436 (570)
                      ..++..++....+.++...|.+.+.-+...+  |+...-..       +.+..+.    ..+...=+.+++.+...+  .
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--i  373 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--I  373 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c
Confidence            3467777778888899999988887776543  33221111       1122221    112333345555555443  2


Q ss_pred             Chh-hHHHH---HHHHHhcCC-HHHHHHHHHhhhhCCCCC-ChhhHHHHH----HHHHh---cCChhHHHHHHHHHHHCC
Q 038914          437 NIV-SYNCL---IDGLCKHGR-LEIAWELFSSLPRVGLMA-DVVTYNIMI----HGLCN---DGQMDKAHGLFLDMEAKG  503 (570)
Q Consensus       437 ~~~-~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~  503 (570)
                      |.. ....+   +.-+.+.|. -++|+++++.+.+.  .+ |...-|.+.    .+|..   ...+.+-..+-.-..+.|
T Consensus       374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g  451 (549)
T PF07079_consen  374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG  451 (549)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            221 12222   334566666 78999999999884  33 333323222    22221   123333333333344567


Q ss_pred             CCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          504 LEPN----FVIFNTLMLG--FIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       504 ~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      ++|-    ...-+-|..+  +...|++.++.-.-.-+.  .+.|+..+++.++-++.....+++|...++.
T Consensus       452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            7763    3444555544  457899999887665555  3789999999999999999999999887653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.29  E-value=0.0039  Score=51.48  Aligned_cols=60  Identities=15%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914          423 VELFRTLRILKYELNIVSYNCLIDGLCK-----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC  484 (570)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  484 (570)
                      ...|+.....  ..+..+|..+++.|.+     .|..+-....+..|.+.|+..|..+|+.|+.++=
T Consensus        34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP   98 (228)
T PF06239_consen   34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP   98 (228)
T ss_pred             HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence            3444444222  4577777777777764     3667777777777888888888888888887764

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.27  E-value=0.0069  Score=50.05  Aligned_cols=114  Identities=19%  Similarity=0.231  Sum_probs=77.0

Q ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          388 LKLFDEMRRNHVAANTYIYTTFIDGLCKN-----GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFS  462 (570)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  462 (570)
                      ...|+....  -..+..+|..++..|.+.     |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+
T Consensus        34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ  109 (228)
T PF06239_consen   34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ  109 (228)
T ss_pred             HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence            444544422  256888999999998754     6777788888999999999999999999987654 3221 111111


Q ss_pred             hhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038914          463 SLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNN  522 (570)
Q Consensus       463 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  522 (570)
                      .+-               .  -.-.+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus       110 ~~F---------------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  110 AEF---------------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHh---------------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            111               0  112244567888888888888888888888888875544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.04  Score=46.26  Aligned_cols=204  Identities=12%  Similarity=0.065  Sum_probs=105.2

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchH
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTY  155 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  155 (570)
                      ..|..-+.+|...+++++|...+.++.+.. .-+...|              .....++.|.-+..++.+.  +--+..+
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf--------------hAAKayEqaamLake~~kl--sEvvdl~   94 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF--------------HAAKAYEQAAMLAKELSKL--SEVVDLY   94 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH--------------HHHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence            345666677888889999988888877431 1111111              1123566777777777654  2234456


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCCCHHH
Q 038914          156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---N--INPNAVT  230 (570)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~~  230 (570)
                      +.....|.++|..+.|-..++++-+.-                      ..-++++|+++|++....   +  ...-...
T Consensus        95 eKAs~lY~E~GspdtAAmaleKAak~l----------------------env~Pd~AlqlYqralavve~~dr~~ma~el  152 (308)
T KOG1585|consen   95 EKASELYVECGSPDTAAMALEKAAKAL----------------------ENVKPDDALQLYQRALAVVEEDDRDQMAFEL  152 (308)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHh----------------------hcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            677788888898888888887765421                      223445555555544321   0  0011222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHhhHH
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMDQ----GVQPNV-VTFTVIMDELCKNGKMDGASRLLELMILRGV---KPDTSTYN  302 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~  302 (570)
                      +......+++...+++|-..+.+-...    .-.++. ..|...+-.+.-..++..|.+.++...+.+-   .-+..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            333444555555555554444332111    001111 1233344445555566666666666444321   12334445


Q ss_pred             HHHHHHHhcCCHHHHHH
Q 038914          303 TLIDGYCLTGKIDRARE  319 (570)
Q Consensus       303 ~l~~~~~~~~~~~~a~~  319 (570)
                      .|+.+| ..|+.+++..
T Consensus       233 nLL~ay-d~gD~E~~~k  248 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKK  248 (308)
T ss_pred             HHHHHh-ccCCHHHHHH
Confidence            555544 3455444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.0018  Score=55.57  Aligned_cols=92  Identities=17%  Similarity=0.173  Sum_probs=47.4

Q ss_pred             CCCCChhHHHHHHHHHHhcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           50 ITTITPNDALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      ++.|++.+|...|...++..|. .....+++.|+.++..+|++++|..+|..+.+.  .|+.....   .++.+.|....
T Consensus       152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KAp---dallKlg~~~~  226 (262)
T COG1729         152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAP---DALLKLGVSLG  226 (262)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCCh---HHHHHHHHHHH
Confidence            3455666666666666665552 223445666666666666666666666666655  23221110   11111122222


Q ss_pred             hhCCHHHHHHHHHHHHhc
Q 038914          129 VESRIMEAAALFTKLRVF  146 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~  146 (570)
                      ..|+.++|...|+++.+.
T Consensus       227 ~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         227 RLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HhcCHHHHHHHHHHHHHH
Confidence            334666666666666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.20  E-value=0.17  Score=46.71  Aligned_cols=165  Identities=15%  Similarity=0.048  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038914          371 YHTLFLGLFEVHQVEHALKLFDEMRRNH---VAANTYIYTTFIDGLCK---NGYIVKAVELFRTLRILKYELNIVSYNCL  444 (570)
Q Consensus       371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  444 (570)
                      ...++-+|-...+++...++.+.+....   +.....+-...+.++.+   .|+.++|.+++..+......++..++..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            3344445555555555555555554321   11122222233334444   55566666666554333334555555555


Q ss_pred             HHHHHh---------cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC-hh---HHHHHH---H-HHHHCCCC-C
Q 038914          445 IDGLCK---------HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ-MD---KAHGLF---L-DMEAKGLE-P  506 (570)
Q Consensus       445 ~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~-~~~~~~~~-p  506 (570)
                      +..|-.         ....++|...|.+.-+.  .|+..+=-+++..+.-.|. .+   +..++-   . ...++|.. +
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            544321         11255666666655542  3443322222222222232 11   122221   1 11122222 2


Q ss_pred             CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          507 NFV--IFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       507 ~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ...  .+..++.++.-.|++++|.+.+++|.+.
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            222  2345666777788888888888888865

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.19  E-value=0.05  Score=52.40  Aligned_cols=88  Identities=17%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh-------
Q 038914          403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT-------  475 (570)
Q Consensus       403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------  475 (570)
                      ..++..+...+.+...+..|-++|..+-..         ..+++.....++|.+|..+-+...+.  .||...       
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA  815 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA  815 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence            344555555556666777777777766422         23455666778888888877776652  344321       


Q ss_pred             ----HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          476 ----YNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       476 ----~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                          |...-.+|.+.|+-.+|..+++++..
T Consensus       816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence                12223345555666666666665544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.12  Score=44.08  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          350 EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL  429 (570)
Q Consensus       350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  429 (570)
                      +..+++|++-..       .....++..+.-.|.+.-...++..+.+...+.++.....++..-.+.|+.+.|...|++.
T Consensus       166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            455555554332       2344556666677888888899999988877888899999999999999999999999988


Q ss_pred             HHcCCCCChhhHHHH-----HHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914          430 RILKYELNIVSYNCL-----IDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL  504 (570)
Q Consensus       430 ~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  504 (570)
                      .+..-..|....+.+     ...|.-++++..|...++++.... +.|+..-|.-.-+....|+..+|++.++.|...  
T Consensus       239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--  315 (366)
T KOG2796|consen  239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--  315 (366)
T ss_pred             HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            764434444443333     334556778999999999988753 445566666666777789999999999999984  


Q ss_pred             CCCHHHHHHH
Q 038914          505 EPNFVIFNTL  514 (570)
Q Consensus       505 ~p~~~~~~~l  514 (570)
                      .|...+-+++
T Consensus       316 ~P~~~l~es~  325 (366)
T KOG2796|consen  316 DPRHYLHESV  325 (366)
T ss_pred             CCccchhhhH
Confidence            5655544433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.18  E-value=0.13  Score=47.48  Aligned_cols=101  Identities=13%  Similarity=0.024  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK---KGFVDKAKELFLKMKDENINPNAV  229 (570)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~  229 (570)
                      .+...++-.|....+++..+++.+.+.....-   .+......-...+-++.+   .|+.++|++++..+......+++.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            34456666788999999999999999874200   011123333455566777   899999999999977666777889


Q ss_pred             HHHHHHHHHHhc---------CCHHHHHHHHHHHHH
Q 038914          230 TYTSLICGFCYA---------NDWNEAKHLFIEMMD  256 (570)
Q Consensus       230 ~~~~l~~~~~~~---------~~~~~a~~~~~~~~~  256 (570)
                      +|..+...|-..         ...++|+..|.+.-.
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            998888776432         124455555554443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.2  Score=45.72  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=67.6

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC  449 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  449 (570)
                      +....+..+...|+...|.++-.+..    .|+...|...+.+++..+++++-..+...      .-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            44555556666777777666655542    46677777777777777777766554321      123455677777777


Q ss_pred             hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914          450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF  496 (570)
Q Consensus       450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  496 (570)
                      +.|+..+|..+...+.          +..-+..|.++|++.+|.+.-
T Consensus       249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence            7777777777766521          134556677777777776653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK15331 chaperone protein SicA; Provisional

Probab=97.11  E-value=0.057  Score=42.87  Aligned_cols=86  Identities=10%  Similarity=-0.029  Sum_probs=38.9

Q ss_pred             hhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038914          379 FEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAW  458 (570)
Q Consensus       379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  458 (570)
                      ...|++++|..+|.-+...+ +-+..-+..+..++-..+++++|+..|......+ ..|+..+-....++...|+.+.|.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence            34455555555554444332 2233334444444444455555555554443333 223333333444555555555555


Q ss_pred             HHHHhhhh
Q 038914          459 ELFSSLPR  466 (570)
Q Consensus       459 ~~~~~~~~  466 (570)
                      ..|+....
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            55554444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.06  E-value=0.13  Score=42.43  Aligned_cols=188  Identities=18%  Similarity=0.062  Sum_probs=108.1

Q ss_pred             hcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914           44 SSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN  123 (570)
Q Consensus        44 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (570)
                      ..|...=+.|-.+.|+--|..++...|  .-+..||-++.-+...|+++.|.+.|+...+..+.-+-...+.-       
T Consensus        70 ERGvlYDSlGL~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-------  140 (297)
T COG4785          70 ERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-------  140 (297)
T ss_pred             HhcchhhhhhHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-------
Confidence            344444455666778888888888888  77888999999999999999999999999987433333333333       


Q ss_pred             CCcchhhCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCCcccCCChhhHHHHHH
Q 038914          124 GSSLCVESRIMEAAALFTKLRVFGCE-PDVFTYNTLINGLCRTGHTIVALNLF-EEMANGNGEIGVVCKPDTVTYTTIID  201 (570)
Q Consensus       124 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (570)
                       -.+.-.|++.-|.+-+.+.-+.+.. |-...|..++   -+.-++.+|..-+ ++..+          .|..-|...+.
T Consensus       141 -i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----------~d~e~WG~~iV  206 (297)
T COG4785         141 -IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----------SDKEQWGWNIV  206 (297)
T ss_pred             -eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----------ccHhhhhHHHH
Confidence             3334457999998888777665321 1112233333   2345666665443 44433          23344443333


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          202 GLCKKGFVDKAKELFLKMKDENINPN-------AVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       202 ~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      .+.- |++. .+.+++++... ...+       ..+|--|...+...|+.++|..+|+-.+..
T Consensus       207 ~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         207 EFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            2221 1111 12233333321 1111       345555666666777777777777666553

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.05  E-value=0.33  Score=46.85  Aligned_cols=397  Identities=12%  Similarity=0.029  Sum_probs=224.5

Q ss_pred             hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHH
Q 038914           55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIM  134 (570)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  134 (570)
                      .+.+...++.++..-|  .-.--|-..+..-.+.|..+.+.++|++.+.. ++.+...+...+..+...      .|+.+
T Consensus        61 ~~~~r~~y~~fL~kyP--l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~------~~d~~  131 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYP--LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNN------NGDPE  131 (577)
T ss_pred             HHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcc------CCCHH
Confidence            4677778888887766  44455777777778999999999999999864 444555566666555443      47888


Q ss_pred             HHHHHHHHHHhc-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH---Hhc---
Q 038914          135 EAAALFTKLRVF-GCE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL---CKK---  206 (570)
Q Consensus       135 ~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~---  206 (570)
                      .....|+..... |.. .....|...|..-..++++.....+++++++.-          ...++..-.-|   ...   
T Consensus       132 ~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----------~~~~~~~f~~f~~~l~~~~~  201 (577)
T KOG1258|consen  132 TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----------LHQLNRHFDRFKQLLNQNEE  201 (577)
T ss_pred             HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----------hhHhHHHHHHHHHHHhcCCh
Confidence            888899888764 211 234568888888888899999999999998742          22222222222   221   


Q ss_pred             ---CCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038914          207 ---GFVDKAKELFLKMKDE---N-INPNAVTYTSLICGFCY-ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGK  278 (570)
Q Consensus       207 ---g~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  278 (570)
                         ...+++.++-......   . ..+....+..-+..-.. .+..+++..++.+...           .--.++.....
T Consensus       202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~  270 (577)
T KOG1258|consen  202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEE  270 (577)
T ss_pred             hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHh
Confidence               2233333332222211   0 00011111111110000 0111111111111110           01112222333


Q ss_pred             hhHHHHHHHHHHHCC---CC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038914          279 MDGASRLLELMILRG---VK----PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEE  351 (570)
Q Consensus       279 ~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  351 (570)
                      ..+....++.-++.-   +.    ++..+|...+......|+.+.+.-+|+...-.- ..-...|-..+.-....|+.+-
T Consensus       271 ~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~  349 (577)
T KOG1258|consen  271 EEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSL  349 (577)
T ss_pred             HHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhH
Confidence            344444445444431   22    234577888888888999999998888875421 1123445555665666688888


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHH-hhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH---HHH
Q 038914          352 GLNLYRKMLSKGIRPTVVTYHTLFLGL-FEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVE---LFR  427 (570)
Q Consensus       352 A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---~~~  427 (570)
                      |..++....+--.+ +......+-..+ -..|+++.|..+++.+...- +.....-..-+....+.|+.+.+..   ++.
T Consensus       350 ~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s  427 (577)
T KOG1258|consen  350 ANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYS  427 (577)
T ss_pred             HHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence            88888777665333 333222222222 34689999999999998764 3333344444556677888888773   333


Q ss_pred             HHHHcCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC
Q 038914          428 TLRILKYELNIVSYNCLIDG-----LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG  487 (570)
Q Consensus       428 ~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  487 (570)
                      .....  .-+......+.--     +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus       428 ~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  428 SIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             Hhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            32221  2222222222222     23367899999999999886 4566677888877766554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.05  E-value=0.079  Score=41.99  Aligned_cols=127  Identities=17%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCcchh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-AYNILINCFLQNGSSLCV  129 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~  129 (570)
                      ..|..++|+..|..+.+.+-....+.+....+....+.|+-..|+..|+++-.....|... ....+-.+|.     +..
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l-----LvD  144 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL-----LVD  144 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH-----Hhc
Confidence            4678899999999998765534455666677788899999999999999998876555443 3333333332     344


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      .|.|+......+.+...+.+-....-..|.-+-.+.|++.+|.+.|+.+....
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence            67999988888877665544444556678888889999999999999998755

>PRK15331 chaperone protein SicA; Provisional

Probab=97.05  E-value=0.03  Score=44.41  Aligned_cols=90  Identities=16%  Similarity=-0.003  Sum_probs=68.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCCh
Q 038914          410 IDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQM  489 (570)
Q Consensus       410 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  489 (570)
                      ..-+...|++++|..+|.-+...+ +-+..-|..|..++...+++++|...|......+ .-|+..+-..+.++...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence            334557788999988888877665 4566777888888888888888888888776543 23555556678888888888


Q ss_pred             hHHHHHHHHHHH
Q 038914          490 DKAHGLFLDMEA  501 (570)
Q Consensus       490 ~~A~~~~~~~~~  501 (570)
                      +.|...|...++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            888888888877

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.04  E-value=0.00088  Score=46.79  Aligned_cols=68  Identities=24%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTIIDGLCKKGFVDKAKELFLKMKD  221 (570)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  221 (570)
                      .+++.+...|...|++++|+..|+++.+.....|. -.|+ ..++..+..++...|++++|++.+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            46888999999999999999999999865211111 1222 56788888899999999999999887654

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.04  E-value=0.035  Score=44.46  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCC--CC-CCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 038914           82 FGCLAKTKHYDTVLSLFKRLNSTG--LF-PDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTL  158 (570)
Q Consensus        82 ~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  158 (570)
                      +......|+.+.+.+.++++....  .. ++.....                 =.......++...       ..+...+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~-----------------W~~~~r~~l~~~~-------~~~~~~l   68 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEE-----------------WVEPERERLRELY-------LDALERL   68 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTST-----------------THHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccH-----------------HHHHHHHHHHHHH-------HHHHHHH
Confidence            334456778888888888887662  11 1111100                 1111222222221       2355567


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 038914          159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD-----ENINPNAVTY  231 (570)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~  231 (570)
                      +..+...|++++|+.+++.+...+       +-+...|..+|.+|...|+..+|.+.|+++..     .|+.|+..+-
T Consensus        69 ~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   69 AEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            788888999999999999999876       56788999999999999999999999988753     3777776553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.01  E-value=0.0047  Score=42.38  Aligned_cols=53  Identities=13%  Similarity=0.028  Sum_probs=20.7

Q ss_pred             HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      |.+.+++++|.++++.+...+ +.+...+...+.++...|++++|...|++..+
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            333444444444444444321 11223333344444444444444444444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.19  Score=43.96  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=86.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      .....|++..|...|....... +-+......++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            3455677777777777766554 334555666677777777777777777766543111111221222333444444444


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          492 AHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNV-MPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      ...+-++.-..  +-|...-..+...+...|+.++|.+.+-.+++.+. .-|...-..+++.|.--|..+.+...|+|
T Consensus       222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR  297 (304)
T COG3118         222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR  297 (304)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            44444444431  22566666677777777777777777666663321 23455556666666666665555544443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0067  Score=54.99  Aligned_cols=133  Identities=15%  Similarity=0.117  Sum_probs=96.2

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCC----C---------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRP----S---------RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL  106 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  106 (570)
                      ......|..+++.|++..|...|++++..-.    .         ..-..++..++.++.+.+++.+|++..++.+... 
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-  287 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-  287 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-
Confidence            4466689999999999999999999875321    0         0112367788999999999999999999999884 


Q ss_pred             CCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCC-hhHHHHHHHHHHhCC
Q 038914          107 FPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT-YNTLINGLCRTGH-TIVALNLFEEMANGN  182 (570)
Q Consensus       107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~-~~~A~~~~~~~~~~~  182 (570)
                       |+.      ..++.+.|..+...|+++.|+..|+++++.  .|+... -+-|+.+-.+..+ .++..++|..|...-
T Consensus       288 -~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  288 -PNN------VKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             -CCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             433      255566666677778999999999999987  555444 4445554444443 344577888887543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.95  E-value=0.0012  Score=36.90  Aligned_cols=33  Identities=12%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             HHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 038914           62 FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS   96 (570)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   96 (570)
                      |+++++.+|  .++.+|+.++..|...|++++|++
T Consensus         2 y~kAie~~P--~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNP--NNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCC--CCHHHHHHHHHHHHHCcCHHhhcC
Confidence            688899999  999999999999999999999863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.94  E-value=0.011  Score=45.51  Aligned_cols=76  Identities=9%  Similarity=0.033  Sum_probs=58.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL  121 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  121 (570)
                      |...+..|++++|.+.|+.+..+.|. +....+...++.++.+.|++++|+..+++.++.++......|...+.+++
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            33445688999999999999998774 33456778899999999999999999999999966544455555555443

>PRK11906 transcriptional regulator; Provisional

Probab=96.90  E-value=0.18  Score=47.43  Aligned_cols=154  Identities=14%  Similarity=0.046  Sum_probs=96.9

Q ss_pred             ChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc----CCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038914           90 HYDTVLSLFKRLNST-GLFPDLYAYNILINCFLQN----GSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR  164 (570)
Q Consensus        90 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (570)
                      ..+.|+.+|.+++.. ...|+-......+..|.-.    |..- ......+|.++-++.++.+ +.|..+...+..+..-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence            346788899999822 2355544333333332221    1111 4567778888888888876 4477777777777778


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC
Q 038914          165 TGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENIN-PNAVTYTSLICGFCYAND  243 (570)
Q Consensus       165 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  243 (570)
                      .++++.|...|+++...+       +....+|......+.-.|+.++|.+.+++..+.... .-.......++.|+. ..
T Consensus       351 ~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~  422 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NP  422 (458)
T ss_pred             hcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-Cc
Confidence            888999999999998865       333667777777777889999999999887665211 112222233334433 34


Q ss_pred             HHHHHHHHHH
Q 038914          244 WNEAKHLFIE  253 (570)
Q Consensus       244 ~~~a~~~~~~  253 (570)
                      .++|+.+|-+
T Consensus       423 ~~~~~~~~~~  432 (458)
T PRK11906        423 LKNNIKLYYK  432 (458)
T ss_pred             hhhhHHHHhh
Confidence            5666666543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.88  E-value=0.013  Score=46.90  Aligned_cols=73  Identities=14%  Similarity=0.193  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 038914          476 YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD-----MRNVMPDASTLSIV  549 (570)
Q Consensus       476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~~l  549 (570)
                      ...++..+...|++++|..+.+.+.... +-+...|..++.++...|+..+|.+.|+++.     +.|+.|+..+-...
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~  142 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY  142 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence            3445556667777777777777777642 3356677777777777777777777777764     34777776655443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.84  E-value=0.77  Score=48.22  Aligned_cols=110  Identities=14%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh--HHHHHHH
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT--YNIMIHG  482 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~  482 (570)
                      .|.+....+...+.+++|.-+|+..-+         ....+.+|...|+|.+|+.+..++..   ..+...  -..|+.-
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSR 1008 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHH
Confidence            444455555566677777666665422         12345677778888888888776653   122221  2456667


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          483 LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM  534 (570)
Q Consensus       483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  534 (570)
                      +...+++-+|-++..+....   |     ...+..+++...|++|.++....
T Consensus      1009 L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence            77788888888887776652   1     22233445555666666655444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.66  Score=46.70  Aligned_cols=147  Identities=16%  Similarity=0.155  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHH
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYN  156 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  156 (570)
                      .....+..+.+.|++++|...|-+.+.. +.|..     ++.-+..       ..+..+-..+++.+.+.|.. +...-.
T Consensus       370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLd-------aq~IknLt~YLe~L~~~gla-~~dhtt  435 (933)
T KOG2114|consen  370 IHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLD-------AQRIKNLTSYLEALHKKGLA-NSDHTT  435 (933)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcC-------HHHHHHHHHHHHHHHHcccc-cchhHH
Confidence            3445666778899999999999888754 23322     3333322       34777788888888888765 556667


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914          157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLIC  236 (570)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  236 (570)
                      .|+.+|.+.++.++-.+..+... .+.     .   ..-....+..+.+.+-.++|.-+-.+...     +......++ 
T Consensus       436 lLLncYiKlkd~~kL~efI~~~~-~g~-----~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill-  500 (933)
T KOG2114|consen  436 LLLNCYIKLKDVEKLTEFISKCD-KGE-----W---FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL-  500 (933)
T ss_pred             HHHHHHHHhcchHHHHHHHhcCC-Ccc-----e---eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH-
Confidence            88999999999988776666544 110     1   22345567777777877877766655443     333344333 


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 038914          237 GFCYANDWNEAKHLFIEM  254 (570)
Q Consensus       237 ~~~~~~~~~~a~~~~~~~  254 (570)
                        -..|++++|++.+..+
T Consensus       501 --e~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  501 --EDLHNYEEALRYISSL  516 (933)
T ss_pred             --HHhcCHHHHHHHHhcC
Confidence              3578899999888765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.81  E-value=0.08  Score=49.73  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          197 TTIIDGLCKKGFVDKAKELFLKMKDENIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMM  255 (570)
Q Consensus       197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  255 (570)
                      ..+..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+..
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            34555555555555555555555443111 122344455555555555555555555543

The molecular function of this protein is uncertain.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.77  E-value=0.32  Score=47.19  Aligned_cols=83  Identities=13%  Similarity=0.132  Sum_probs=38.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-----------hH
Q 038914          303 TLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV-----------TY  371 (570)
Q Consensus       303 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~  371 (570)
                      .+...+.+...+..|-++|..|-+.         ..+++.....++|.+|..+-++..+.  .|+..           -+
T Consensus       752 ~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrF  820 (1081)
T KOG1538|consen  752 LCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRF  820 (1081)
T ss_pred             HHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhH
Confidence            3333344444555555555554332         23444555556666665555543331  22211           11


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHh
Q 038914          372 HTLFLGLFEVHQVEHALKLFDEMRR  396 (570)
Q Consensus       372 ~~l~~~~~~~~~~~~a~~~~~~~~~  396 (570)
                      ...-.+|.+.|+-.+|..+++++..
T Consensus       821 eEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  821 EEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHhhh
Confidence            1122334445666666666666543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.027  Score=51.29  Aligned_cols=140  Identities=14%  Similarity=0.031  Sum_probs=74.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 038914           81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN  160 (570)
Q Consensus        81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  160 (570)
                      -+..+.+.|+|..|...|+++++.=..-             +       .-+.++......        .-..+++.|..
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~-------------~-------~~~~ee~~~~~~--------~k~~~~lNlA~  265 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYR-------------R-------SFDEEEQKKAEA--------LKLACHLNLAA  265 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhcc-------------c-------cCCHHHHHHHHH--------HHHHHhhHHHH
Confidence            3457889999999999999987541000             0       001111111110        11234445555


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038914          161 GLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY  240 (570)
Q Consensus       161 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  240 (570)
                      ++.+.+++.+|+...++.+..+       ++|+-....-..+|...|+++.|+..|+++++.... |-.+-..|+.+-.+
T Consensus       266 c~lKl~~~~~Ai~~c~kvLe~~-------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  266 CYLKLKEYKEAIESCNKVLELD-------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQK  337 (397)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence            6666666666666666666654       445555555666666666666666666666655533 44444444444444


Q ss_pred             cCCHHH-HHHHHHHHHH
Q 038914          241 ANDWNE-AKHLFIEMMD  256 (570)
Q Consensus       241 ~~~~~~-a~~~~~~~~~  256 (570)
                      .....+ ..++|..|..
T Consensus       338 ~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            333332 2455555543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.70  E-value=0.17  Score=49.42  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-------HHHHHHHhcCCcchhh
Q 038914           58 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYN-------ILINCFLQNGSSLCVE  130 (570)
Q Consensus        58 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~  130 (570)
                      ...+|+-++..-|     .....++....-.|+-+.+++++.+..+.+ ........       .++..+... . - ..
T Consensus       176 G~G~f~L~lSlLP-----p~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~-~-~-~~  246 (468)
T PF10300_consen  176 GFGLFNLVLSLLP-----PKVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGI-D-G-ED  246 (468)
T ss_pred             HHHHHHHHHHhCC-----HHHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCC-c-c-cC
Confidence            3567777777766     345677777888899999999999887642 22221111       111111111 0 0 23


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNT-LINGLCRTGHTIVALNLFEEMA  179 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~  179 (570)
                      ...+.|.++++.+..+  -|+...|.. -.+.+...|+.++|++.|+++.
T Consensus       247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~  294 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAI  294 (468)
T ss_pred             CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence            4555566666655554  334333332 2334445566666666666544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.67  E-value=0.022  Score=53.08  Aligned_cols=99  Identities=13%  Similarity=0.015  Sum_probs=70.6

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 038914          435 ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV----VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVI  510 (570)
Q Consensus       435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  510 (570)
                      +.+...++.+..+|...|++++|+..|++.++.  .|+.    .+|..+..+|...|+.++|+..++++++.+ .+   .
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~  145 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K  145 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence            456778999999999999999999999999884  5664    358899999999999999999999999842 11   2


Q ss_pred             HHHHHH--HHHhcCCHHHHHHHHHHHHhCCC
Q 038914          511 FNTLML--GFIRNNETSKVIELLHRMDMRNV  539 (570)
Q Consensus       511 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~  539 (570)
                      |..+..  .+..-.+..+..++++.+.+.|.
T Consensus       146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        146 FSTILNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            221111  11122233466667777766553

>PRK11906 transcriptional regulator; Provisional

Probab=96.65  E-value=0.1  Score=49.00  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHh-CCCCcC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914          383 QVEHALKLFDEMRR-NHVAAN-TYIYTTFIDGLCKN---------GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH  451 (570)
Q Consensus       383 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  451 (570)
                      ..+.|+.+|.+... +...|+ ...|..+..++...         .+..+|.+..++..+.+ +.|......+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            45677888888772 223333 44455454444321         23456777777788877 67888888888877888


Q ss_pred             CCHHHHHHHHHhhhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 038914          452 GRLEIAWELFSSLPRVGLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV---IFNTLMLGFIRNNETSKV  527 (570)
Q Consensus       452 g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a  527 (570)
                      ++++.|...|++....  .||. .+|......+...|+.++|.+.+++..+  +.|...   .....+..|+..+ .++|
T Consensus       352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~  426 (458)
T PRK11906        352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNN  426 (458)
T ss_pred             cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence            8899999999988874  5654 6677777778888999999999888777  355432   3333444565554 5667


Q ss_pred             HHHHHHHH
Q 038914          528 IELLHRMD  535 (570)
Q Consensus       528 ~~~~~~~~  535 (570)
                      ++++-+-.
T Consensus       427 ~~~~~~~~  434 (458)
T PRK11906        427 IKLYYKET  434 (458)
T ss_pred             HHHHhhcc
Confidence            77665443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.57  E-value=0.42  Score=41.08  Aligned_cols=67  Identities=12%  Similarity=0.075  Sum_probs=33.3

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914           75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF  146 (570)
Q Consensus        75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (570)
                      +..|..-+....+.|++++|...|+.+.+..+...-.--..+..++     .+.+.+++++|+...++....
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~y-----A~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAY-----AYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHH-----HHHhcccHHHHHHHHHHHHHh
Confidence            3445555555666677777777777776653221111111111111     122334666666666666655

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.47  E-value=0.066  Score=41.04  Aligned_cols=97  Identities=11%  Similarity=0.084  Sum_probs=51.3

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038914          437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML  516 (570)
Q Consensus       437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  516 (570)
                      |..++..++.++++.|+.+....+++..-.  +..+...-         .+.         --....+.|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence            345667777777777777777777765422  11111000         000         0011234555666666666


Q ss_pred             HHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Q 038914          517 GFIRNNETSKVIELLHRMD-MRNVMPDASTLSIVVDLL  553 (570)
Q Consensus       517 ~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~  553 (570)
                      +|...|++..|+++++... ..+++.+..+|..|++-.
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            6666666666666666655 345555556666655553

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.45  E-value=0.053  Score=48.40  Aligned_cols=242  Identities=13%  Similarity=0.056  Sum_probs=119.5

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRP-SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNG  124 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (570)
                      |..++...+.+.|+..+...+..-. .-.-...+..+..+..+.|.+++++..--.-+..-  .+-..-.....++.+..
T Consensus        13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a--~~~~ds~~~~ea~lnla   90 (518)
T KOG1941|consen   13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTA--RELEDSDFLLEAYLNLA   90 (518)
T ss_pred             HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            3344556677888887777664321 01112234456677888888887765433222221  11111112223333222


Q ss_pred             CcchhhCCHHHHHHHHHHHHhc-CCCC--C-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHH
Q 038914          125 SSLCVESRIMEAAALFTKLRVF-GCEP--D-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTII  200 (570)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~~~~~-~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  200 (570)
                      ..+.+--++.+++.+-..-... |..+  + -.....+..++.-.+.++++++.|+.+.+...+.+. .......+..|.
T Consensus        91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lg  169 (518)
T KOG1941|consen   91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLG  169 (518)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHH
Confidence            1122222333333333322221 1111  1 123334556667778889999999888764422111 122345788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhH
Q 038914          201 DGLCKKGFVDKAKELFLKMKDE----NINPNAVTY-----TSLICGFCYANDWNEAKHLFIEMMDQ----GVQP-NVVTF  266 (570)
Q Consensus       201 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~  266 (570)
                      ..|.+..++++|.-+..+..+.    ++..-..-|     ..+.-++...|...+|.+.-++..+.    |..+ -....
T Consensus       170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            8888888888887766555432    222111112     22334455566666666665554432    2111 11223


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHH
Q 038914          267 TVIMDELCKNGKMDGASRLLELMI  290 (570)
Q Consensus       267 ~~l~~~~~~~g~~~~a~~~~~~~~  290 (570)
                      ..+...|...|+.+.|..-|++..
T Consensus       250 ~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  250 LCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHH
Confidence            345556666666666666555543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.34  E-value=0.35  Score=47.20  Aligned_cols=117  Identities=15%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHhhhhCC--C-CCChhhHHHHHHHHHhcCChhH
Q 038914          416 NGYIVKAVELFRTLRILKYELNIVSY-NCLIDGLCKHGRLEIAWELFSSLPRVG--L-MADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      ....+.|.+++..+...  -|+...| ..-.+.+...|++++|.+.|+......  . ......+.-++.++.-.++|++
T Consensus       246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            34667777788777765  3444433 333455667788888888888655311  1 1123445567777888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHH
Q 038914          492 AHGLFLDMEAKGLEPNFVIFNTLM-LGFIRNNET-------SKVIELLHRMD  535 (570)
Q Consensus       492 A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~  535 (570)
                      |...|..+.+.. ..+..+|..+. .++...|+.       ++|.+++.+..
T Consensus       324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            888888888753 22444444333 344556766       77777777765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.95  E-value=0.82  Score=41.25  Aligned_cols=234  Identities=13%  Similarity=0.034  Sum_probs=135.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc--CCC---CCcchH
Q 038914           81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF--GCE---PDVFTY  155 (570)
Q Consensus        81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~  155 (570)
                      -+.-+....+.++|+..+.+.+..-  .+...   -+..+-.........|.+++++..--..+..  ...   .-..+|
T Consensus        12 ~g~~Ly~s~~~~~al~~w~~~L~~l--~~~~~---Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~   86 (518)
T KOG1941|consen   12 KGLQLYQSNQTEKALQVWTKVLEKL--SDLMG---RFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY   86 (518)
T ss_pred             HHHhHhcCchHHHHHHHHHHHHHHH--HHHHH---HHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566777788887777766531  11111   1111111112333445666655433222111  001   112456


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC
Q 038914          156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKP---DTVTYTTIIDGLCKKGFVDKAKELFLKMKDEN-----INPN  227 (570)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~  227 (570)
                      ..+.+.+.+.-++.+++.+-..-....+     ..|   -.....++..+..-.+.++++++.|+...+..     .-..
T Consensus        87 lnlar~~e~l~~f~kt~~y~k~~l~lpg-----t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE  161 (518)
T KOG1941|consen   87 LNLARSNEKLCEFHKTISYCKTCLGLPG-----TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE  161 (518)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCC-----CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence            6677777777788888887766655332     111   12334556667777788999999998876531     1123


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-h-----hHHHHHHHHHhcCChhHHHHHHHHHHHC----C
Q 038914          228 AVTYTSLICGFCYANDWNEAKHLFIEMMDQ----GVQPNV-V-----TFTVIMDELCKNGKMDGASRLLELMILR----G  293 (570)
Q Consensus       228 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~  293 (570)
                      ..++..|...|....|+++|.-+..+..+.    ++. |. .     ....+.-++...|.+..|.+..++..+.    |
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG  240 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence            467888999999999999988776655432    222 11 1     1223445677888888888888776543    3


Q ss_pred             CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          294 VKPD-TSTYNTLIDGYCLTGKIDRARELFVSME  325 (570)
Q Consensus       294 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  325 (570)
                      -.+. ......+.+.|...|+.+.|+.-|++..
T Consensus       241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            2221 2334556678888899888888877654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.93  E-value=1.2  Score=40.16  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=98.1

Q ss_pred             CCCCChhHHHHHHHHHHhcC-CCCCCH-----HhHHHHHHHHHhcC-ChHHHHHHHHHHHhC--------CCCCCH----
Q 038914           50 ITTITPNDALCVFDYMLNMR-PSRPPV-----TSFNILFGCLAKTK-HYDTVLSLFKRLNST--------GLFPDL----  110 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~----  110 (570)
                      .+.|+.+.|...+.++.... ...|+.     ..++..+..+...+ +++.|..+++++.+.        ...|+.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46889999999999987654 211221     13445566667778 999998888887554        122333    


Q ss_pred             -hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 038914          111 -YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC  189 (570)
Q Consensus       111 -~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  189 (570)
                       .++..+..++...+    .....++|..+++.+.... +..+.++..-+.++.+.++.+.+.+.+..|...-       
T Consensus        84 ~~iL~~La~~~l~~~----~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-------  151 (278)
T PF08631_consen   84 LSILRLLANAYLEWD----TYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-------  151 (278)
T ss_pred             HHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-------
Confidence             23334444444432    2235566777777775542 2235566677788888899999999999998753       


Q ss_pred             CCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          190 KPDTVTYTTIIDGL---CKKGFVDKAKELFLKMKDENINPN  227 (570)
Q Consensus       190 ~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~  227 (570)
                      .-....+...+..+   .... ...+...+..+....+.|.
T Consensus       152 ~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  152 DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence            21234444444444   3332 3455555555544333333

It is also involved in sporulation [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.93  E-value=0.18  Score=37.88  Aligned_cols=53  Identities=23%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      ....|+++.|++.|.+.+.. .+.+...||.-.+++.-.|+.++|+.-+++.++
T Consensus        53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34445555555555554442 122344455555555555555555555555444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.91  E-value=1.6  Score=41.45  Aligned_cols=164  Identities=11%  Similarity=0.119  Sum_probs=97.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914          156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDT-VTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL  234 (570)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (570)
                      ..+|.-..+..+...-++.-.++++.+        ||. ..|..|..  -......+++++|++..+.|-    ..+.  
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg--  235 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLG--  235 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhc--
Confidence            345555567777888888888887754        443 34443332  123457888999988876531    1111  


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCC
Q 038914          235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK-PDTSTYNTLIDGYCLTGK  313 (570)
Q Consensus       235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  313 (570)
                           +.......-..++....+...+-..+-..+..++.+.|+.++|.+.+++|.+.... ....+...|+.++...+.
T Consensus       236 -----~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~  310 (539)
T PF04184_consen  236 -----KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA  310 (539)
T ss_pred             -----hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence                 00000010111222222222333444456777888899999999999999875322 234467788999999999


Q ss_pred             HHHHHHHHHHHHhCCCCC-CHhhHHHHH
Q 038914          314 IDRARELFVSMESNGCMH-DVVSYSILI  340 (570)
Q Consensus       314 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~  340 (570)
                      +.++..++.+..+...+. -..+|+..+
T Consensus       311 Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  311 YADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            999999998876543322 234566544

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.92  Score=38.54  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914          229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY  308 (570)
Q Consensus       229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  308 (570)
                      ..|.....+|....++++|...+.+..+. .+-+...|+ .      ...++.|.-+.+++...  .--...+......|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence            34555556777778888887777666542 222222222 1      22344555555555433  11223455556667


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 038914          309 CLTGKIDRARELFVSME  325 (570)
Q Consensus       309 ~~~~~~~~a~~~~~~~~  325 (570)
                      ..+|..+.|-..+++.-
T Consensus       102 ~E~GspdtAAmaleKAa  118 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAA  118 (308)
T ss_pred             HHhCCcchHHHHHHHHH
Confidence            77777776666665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=2.4  Score=42.99  Aligned_cols=180  Identities=16%  Similarity=0.140  Sum_probs=116.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 038914           78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNT  157 (570)
Q Consensus        78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  157 (570)
                      ....+..+.+...++-|+.+.+.   .+  .+..+...+...|   |.-+...|++++|...|-+.+.. .+|     ..
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kY---gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~  402 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKY---GDYLYGKGDFDEATDQYIETIGF-LEP-----SE  402 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHccc-CCh-----HH
Confidence            34455666777778888777553   22  3344444444433   44566778999999999877643 122     24


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914          158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG  237 (570)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  237 (570)
                      +|.-|....+...-..+++.+.+.+       -.+...-..|+.+|.+.++.++-.++.+... .|..  ..-....+..
T Consensus       403 Vi~kfLdaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~I  472 (933)
T KOG2114|consen  403 VIKKFLDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEI  472 (933)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHH
Confidence            5666667777777788888888876       3456666789999999999998888776654 2221  1113455666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      +.+.+-.++|..+-.....     +......+   +-..+++++|++++..+
T Consensus       473 lr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  473 LRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            7777777777666554432     23333333   45678899999988765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.80  E-value=0.21  Score=38.27  Aligned_cols=84  Identities=13%  Similarity=0.049  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---------CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE---------IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      ..++..+|.++++.|+.+....+++..-..+..         .+....|+..+..+++.+|+..|++..|.++++...+.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            456778999999999999998888776543311         11113344444455555555555555555554444332


Q ss_pred             -CCCCCHHHHHHHH
Q 038914          223 -NINPNAVTYTSLI  235 (570)
Q Consensus       223 -~~~~~~~~~~~l~  235 (570)
                       +++.+..+|..|+
T Consensus        82 Y~I~i~~~~W~~Ll   95 (126)
T PF12921_consen   82 YPIPIPKEFWRRLL   95 (126)
T ss_pred             cCCCCCHHHHHHHH
Confidence             3333344444444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.79  E-value=0.33  Score=42.14  Aligned_cols=90  Identities=12%  Similarity=0.122  Sum_probs=38.2

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 038914          164 RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-N-INPNAVTYTSLICGFCYA  241 (570)
Q Consensus       164 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~  241 (570)
                      +.|++..|...|....+..+..    .-....+.-|..++...|+++.|..+|..+.+. + .+--+..+..|..+..+.
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l  228 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL  228 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence            3444444444444444443221    111223333444444444444444444444322 1 111234444444444455


Q ss_pred             CCHHHHHHHHHHHHHC
Q 038914          242 NDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       242 ~~~~~a~~~~~~~~~~  257 (570)
                      |+.++|..+|+++.+.
T Consensus       229 ~~~d~A~atl~qv~k~  244 (262)
T COG1729         229 GNTDEACATLQQVIKR  244 (262)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            5555555555554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.78  E-value=0.041  Score=48.63  Aligned_cols=98  Identities=11%  Similarity=0.059  Sum_probs=81.7

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914           42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL  121 (570)
Q Consensus        42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  121 (570)
                      ....|..++++|.|++|+..|.+.+...|  .|+..+..-+.+|.+..+|..|..-...++...        ...+.+|+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYS  169 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYS  169 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHH
Confidence            45678899999999999999999999998  888999999999999999999988888877542        23457777


Q ss_pred             hcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914          122 QNGSSLCVESRIMEAAALFTKLRVFGCEPD  151 (570)
Q Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (570)
                      +.+......|...+|.+-++..++.  +|+
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~L--EP~  197 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLAL--EPK  197 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhh--Ccc
Confidence            7776666678999999999998876  555

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.74  E-value=0.091  Score=45.24  Aligned_cols=104  Identities=16%  Similarity=0.318  Sum_probs=54.7

Q ss_pred             CChhhHHHHHHHHHh-----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 038914          436 LNIVSYNCLIDGLCK-----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVI  510 (570)
Q Consensus       436 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  510 (570)
                      -|..+|...+..+..     .+..+-....++.|.+.|+.-|..+|+.|+..+-+..                +.|. ..
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nv  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NV  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HH
Confidence            344555555554432     2445555555666666666666666666665543221                0111 01


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 038914          511 FNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEI  558 (570)
Q Consensus       511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  558 (570)
                      +.....-|-  .+-+-++.++++|...|+.||.++-..++.++++.|-
T Consensus       128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            111111111  1224467777777777777777777777777766554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.36  Score=42.87  Aligned_cols=153  Identities=14%  Similarity=0.031  Sum_probs=99.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH----HHHHHhhcCCHH
Q 038914          310 LTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHT----LFLGLFEVHQVE  385 (570)
Q Consensus       310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~  385 (570)
                      ..|+..+|-..++++++. .|.|...+...-.+|...|+.+.-...+++++.. ..++...|..    ..-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            457777777777777765 3567777777778888888888888888887765 2344433322    233445788888


Q ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C---hhhHHHHHHHHHhcCCHHHHHHHH
Q 038914          386 HALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL-N---IVSYNCLIDGLCKHGRLEIAWELF  461 (570)
Q Consensus       386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~  461 (570)
                      +|++.-++..+.+ +.|.....+....+...|+..++.++..+-... ... +   ...|-...-.+...+.++.|+.+|
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            8888888777654 556666667777777888888888776654321 010 0   111223334556668888888888


Q ss_pred             Hhhhh
Q 038914          462 SSLPR  466 (570)
Q Consensus       462 ~~~~~  466 (570)
                      +.-+-
T Consensus       271 D~ei~  275 (491)
T KOG2610|consen  271 DREIW  275 (491)
T ss_pred             HHHHH
Confidence            75443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.70  E-value=0.033  Score=33.36  Aligned_cols=34  Identities=18%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY  111 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  111 (570)
                      .+|..++..+.+.|++++|+++|+++++.  .|+..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~   35 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDP   35 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence            45677778888888888888888888876  45443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.66  E-value=0.31  Score=37.85  Aligned_cols=85  Identities=13%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY--AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP  150 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  150 (570)
                      .+...+..-+....+.|++++|++.|+.+...-+...-.  .-..++-       .+.+.+++++|...+++.++..+..
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~y-------ayy~~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAY-------AYYKQGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhCCCC
Confidence            345556677777788888888888888888773322211  1222222       3444568888888888888774432


Q ss_pred             CcchHHHHHHHHHh
Q 038914          151 DVFTYNTLINGLCR  164 (570)
Q Consensus       151 ~~~~~~~l~~~~~~  164 (570)
                      ...-|...+.+++.
T Consensus        81 p~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   81 PNVDYAYYMRGLSY   94 (142)
T ss_pred             CCccHHHHHHHHHH
Confidence            33345555555544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.64  E-value=2.8  Score=44.42  Aligned_cols=103  Identities=16%  Similarity=0.087  Sum_probs=48.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcC
Q 038914          235 ICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTS--TYNTLIDGYCLTG  312 (570)
Q Consensus       235 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~  312 (570)
                      ...+...+.+++|.-.|+..-+         ....+.+|...|+|.+|+.+..++...   .+..  +-..|+.-+...+
T Consensus       946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen  946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred             HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence            3444445555555555544321         123345555666666666665554321   1111  1234455555566


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR  357 (570)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  357 (570)
                      ++-+|-++.....+.        ....+..|++...+++|+.+-.
T Consensus      1014 kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred             cchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence            666665555554432        1222333444455555555444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.61  E-value=2  Score=40.18  Aligned_cols=130  Identities=20%  Similarity=0.182  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914          369 VTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG  447 (570)
Q Consensus       369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  447 (570)
                      ..|...+....+..-.+.|..+|-++.+.+ +.++..++++++..++ .|+..-|..+|+.-...- +.+..--+..+.-
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            345555666666677778888888877766 5566777777777554 477777888887654432 2233333455566


Q ss_pred             HHhcCCHHHHHHHHHhhhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          448 LCKHGRLEIAWELFSSLPRVGLMAD--VVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       448 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +...++-+.|..+|+..+.. +..+  ...|..++.--..-|+...+..+=++|.+
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            67777878888888755542 2223  35677777766677777777776666665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.57  E-value=0.39  Score=46.15  Aligned_cols=158  Identities=17%  Similarity=0.139  Sum_probs=91.6

Q ss_pred             HHHHhcCCHHHHHHHHH--HHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 038914          341 NGYCKTKDVEEGLNLYR--KMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY  418 (570)
Q Consensus       341 ~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  418 (570)
                      +...-.++++.+.+...  ++.. .+  ...-...++..+.+.|-.+.|+.+..+-         .   .-.....+.|+
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~  333 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN  333 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence            34445677777776664  1111 11  2334566666667777777777664322         1   12233456788


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914          419 IVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLD  498 (570)
Q Consensus       419 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  498 (570)
                      ++.|.++.+.      ..+...|..|.+.....|+++-|.+.|++..+         |..|+-.|.-.|+.+.-.++.+.
T Consensus       334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence            8877766543      23666788888888888888888888887654         45666677777887777777766


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          499 MEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM  534 (570)
Q Consensus       499 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  534 (570)
                      ....|-      ++....++.-.|+.++..+++.+-
T Consensus       399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  399 AEERGD------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            665531      444555666678888877777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.51  E-value=0.46  Score=45.71  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=35.6

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      +...|..|.....+.|+++-|+..|++..               -+..|+-.|.-.|+.+...++.+.....|-      
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------  404 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------  404 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence            33455555555555555555555555421               233444445555555555444444444321      


Q ss_pred             HHHHHHHHHhcCCHHHHHHHH
Q 038914          231 YTSLICGFCYANDWNEAKHLF  251 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~  251 (570)
                      ++....++.-.|+.++..+++
T Consensus       405 ~n~af~~~~~lgd~~~cv~lL  425 (443)
T PF04053_consen  405 INIAFQAALLLGDVEECVDLL  425 (443)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            233333344444544444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.41  E-value=1.1  Score=35.88  Aligned_cols=122  Identities=20%  Similarity=0.194  Sum_probs=69.6

Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChh-h--HHHHHHHHHh
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTV-T--YTTIIDGLCK  205 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~  205 (570)
                      .+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-...      ..|-.. -  -..-.-.+..
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhc
Confidence            357778888888777765442221 12223344566778888888888876654      122211 1  1111223455


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      .|.++......+.+...+-+.-...-..|.-+-.+.|++.+|..+|..+...
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            6677776666666655544444445555666666677777777777666553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.41  E-value=0.045  Score=32.79  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=33.3

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHH
Q 038914          153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTII  200 (570)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  200 (570)
                      .++..+...|.+.|++++|+++|+++.+..       +.|...+..+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence            357788999999999999999999999975       45566666554

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.41  E-value=1  Score=35.60  Aligned_cols=83  Identities=11%  Similarity=0.015  Sum_probs=38.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC
Q 038914          409 FIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ  488 (570)
Q Consensus       409 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  488 (570)
                      ++..+...+.+.....+++.+...+ +.+....+.++..|++.. ..+....++.      ..+......++..|.+.+-
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence            3444444455555555555555444 244445555555555432 2233333331      1122233345555555555


Q ss_pred             hhHHHHHHHHH
Q 038914          489 MDKAHGLFLDM  499 (570)
Q Consensus       489 ~~~A~~~~~~~  499 (570)
                      ++++.-++.++
T Consensus        85 ~~~~~~l~~k~   95 (140)
T smart00299       85 YEEAVELYKKD   95 (140)
T ss_pred             HHHHHHHHHhh
Confidence            55555555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.68  Score=41.24  Aligned_cols=154  Identities=10%  Similarity=0.007  Sum_probs=112.5

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038914          162 LCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---NINPNAVTYTSLICGF  238 (570)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~  238 (570)
                      +.-.|.+.+|...++++++..       |.|..++...-.+|...|+.+.....++++...   +++-.......+.-++
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            456788999999999999874       778888888889999999999999999998765   2222233334555667


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCHH
Q 038914          239 CYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVK---PDTSTYNTLIDGYCLTGKID  315 (570)
Q Consensus       239 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~  315 (570)
                      ...|-+++|++.-++..+.+ +-|...-......+-..|++.++.+++.+-...--.   .-...|-...-.+...+.++
T Consensus       186 ~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye  264 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE  264 (491)
T ss_pred             HHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence            78899999999999888764 336677778888888899999999987664432100   01122333344566778899


Q ss_pred             HHHHHHHH
Q 038914          316 RARELFVS  323 (570)
Q Consensus       316 ~a~~~~~~  323 (570)
                      .|+++|+.
T Consensus       265 ~aleIyD~  272 (491)
T KOG2610|consen  265 KALEIYDR  272 (491)
T ss_pred             HHHHHHHH
Confidence            99999876

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.26  E-value=1.8  Score=37.44  Aligned_cols=201  Identities=10%  Similarity=0.075  Sum_probs=115.7

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHhhHHHHHHHHHh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNST---GL--FPDLYAYNILINCFLQ  122 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~  122 (570)
                      ++...+++|+.-|++.++..|....  ..+.-.++....+.|++++-...|.+++..   .+  .-+....+.++...+.
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt  117 (440)
T KOG1464|consen   38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST  117 (440)
T ss_pred             ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence            3456899999999999998773222  345667888999999999999999887543   11  2234445555554443


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-Cc-cc---CCChhhHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI-GV-VC---KPDTVTYT  197 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~---~~~~~~~~  197 (570)
                      ...+-.-+.-++..+..++.....  ..-..+-..|...|...|++.+...++.++.+.-... |. ..   ..-...|.
T Consensus       118 S~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA  195 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA  195 (440)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence            321111222233333333333211  1112344567788888888888888888876542110 00 00   11134566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH----HHHHhcCCHHHHHHHHH
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKDEN-INPNAVTYTSLI----CGFCYANDWNEAKHLFI  252 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~  252 (570)
                      .=+..|..+.+-.+...+|++..... .-|.+.....+-    ....+.|+|++|..-|-
T Consensus       196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFF  255 (440)
T KOG1464|consen  196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF  255 (440)
T ss_pred             hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence            66777888887777778887765432 223443333322    22345677777654433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.21  E-value=1.9  Score=37.62  Aligned_cols=198  Identities=19%  Similarity=0.100  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH-H
Q 038914          335 SYSILINGYCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID-G  412 (570)
Q Consensus       335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~  412 (570)
                      .+......+...+.+..+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence            3344444444445555554444444331 111223333344444444444555555555444332111 111111111 4


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-ChhhHHHHHHHHHhcCCh
Q 038914          413 LCKNGYIVKAVELFRTLRILKY--ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMA-DVVTYNIMIHGLCNDGQM  489 (570)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~  489 (570)
                      +...|+++.|...+........  ......+......+...++.+.+...+....... .. ....+..+...+...+++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence            5555666666666665543210  0122222333333455566666666666666531 12 245555666666666666


Q ss_pred             hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          490 DKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       490 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      +.|...+......  .|+ ...+..+...+...|..+++...+.+...
T Consensus       219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666653  233 33333343344455556666666666654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.16  E-value=0.047  Score=30.93  Aligned_cols=27  Identities=11%  Similarity=0.241  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFKRLNS  103 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  103 (570)
                      +|..|+.++.+.|++++|+++|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            578899999999999999999999654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.09  E-value=2.1  Score=37.37  Aligned_cols=200  Identities=19%  Similarity=0.057  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-
Q 038914          299 STYNTLIDGYCLTGKIDRARELFVSMESN-GCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL-  376 (570)
Q Consensus       299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-  376 (570)
                      .........+...+++..+...+...... ........+......+...+++..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            44444555555556666555555555431 112334445555555555566666666666665542222 111122222 


Q ss_pred             HHhhcCCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 038914          377 GLFEVHQVEHALKLFDEMRRNHV--AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL-NIVSYNCLIDGLCKHGR  453 (570)
Q Consensus       377 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  453 (570)
                      .+...|+++.+...+........  ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence            56666777777777766644211  0122333333333556777888888887777654 33 35667777777777888


Q ss_pred             HHHHHHHHHhhhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          454 LEIAWELFSSLPRVGLMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       454 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      ++.|...+......  .|+ ...+..+...+...+..+.+...+.+....
T Consensus       218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            88888888887764  333 344445555555666788888888777763

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.05  E-value=1.7  Score=36.23  Aligned_cols=81  Identities=16%  Similarity=0.055  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914          133 IMEAAALFTKLRVFGCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK  211 (570)
Q Consensus       133 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  211 (570)
                      .+-|.--|.+.+..  .| -+.+||.|..-+...|+++.|.+.|+...+.+       +....+...-.-.+.-.|++.-
T Consensus        81 ~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------p~y~Ya~lNRgi~~YY~gR~~L  151 (297)
T COG4785          81 RALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIALYYGGRYKL  151 (297)
T ss_pred             HHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-------CcchHHHhccceeeeecCchHh
Confidence            33333344444433  23 34567777777777888888888888877765       2223333333334445677777


Q ss_pred             HHHHHHHHHhC
Q 038914          212 AKELFLKMKDE  222 (570)
Q Consensus       212 a~~~~~~~~~~  222 (570)
                      |.+-|.+....
T Consensus       152 Aq~d~~~fYQ~  162 (297)
T COG4785         152 AQDDLLAFYQD  162 (297)
T ss_pred             hHHHHHHHHhc
Confidence            77766666554

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.89  E-value=3.5  Score=38.92  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=54.1

Q ss_pred             cCCHHHHHHHHHhhhhCCCCCChhh----HHHHHHHHHhcC----ChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 038914          451 HGRLEIAWELFSSLPRVGLMADVVT----YNIMIHGLCNDG----QMDKAHGLFLDMEAKGLE--PNFVIFNTLMLGFIR  520 (570)
Q Consensus       451 ~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~  520 (570)
                      .|+.++|+.++-.+.+  +.||..-    |..+++.+....    ..-...+.+.-..+.-+-  .+.............
T Consensus       711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (831)
T PRK15180        711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH  788 (831)
T ss_pred             cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH
Confidence            5889999999888776  6787642    444555444321    111111112212221011  122222222222345


Q ss_pred             cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHc
Q 038914          521 NNETSKVIELLHRMDMRNV--MPDASTLSIVVDLLVK  555 (570)
Q Consensus       521 ~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~  555 (570)
                      ..++..|+++|+++.+-+-  +|-..-....+.++.+
T Consensus       789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  825 (831)
T PRK15180        789 LRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK  825 (831)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence            6789999999999986542  2333445566666654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.57  E-value=0.085  Score=29.33  Aligned_cols=29  Identities=14%  Similarity=0.226  Sum_probs=25.6

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      .+|..++.++...|++++|+..|+++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            57889999999999999999999999876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.47  E-value=1.6  Score=34.83  Aligned_cols=69  Identities=19%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN  123 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (570)
                      ..++.+++..+++-+.-..|  .....-..-+..+.+.|+|.+|+.+|+++...  .|.......++..|...
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP--~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRP--EFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA   90 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence            45578888888888888877  44444444455667888888888888887766  34444555555555443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.43  E-value=0.094  Score=29.08  Aligned_cols=29  Identities=10%  Similarity=0.209  Sum_probs=25.1

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      ..|..++.++...|++++|++.|+++++.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999999876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.43  E-value=1.7  Score=33.09  Aligned_cols=56  Identities=21%  Similarity=0.160  Sum_probs=20.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG  468 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  468 (570)
                      .+...|.-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus        95 ~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   95 ILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            3334444444444444443322 3444444444444444444444444444444433

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.20  E-value=0.68  Score=40.91  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=41.4

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 038914          438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA-----KGLEPNFVIFN  512 (570)
Q Consensus       438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  512 (570)
                      ..++..++..+...|+++.+...++++.... +-+...|..++.+|...|+...|+..|+++.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3444555555566666666666666665542 33455566666666666666666666655543     25555544443


Q ss_pred             H
Q 038914          513 T  513 (570)
Q Consensus       513 ~  513 (570)
                      .
T Consensus       232 ~  232 (280)
T COG3629         232 L  232 (280)
T ss_pred             H
Confidence            3

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.73  E-value=0.16  Score=28.67  Aligned_cols=23  Identities=17%  Similarity=0.156  Sum_probs=10.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHH
Q 038914          476 YNIMIHGLCNDGQMDKAHGLFLD  498 (570)
Q Consensus       476 ~~~l~~~~~~~g~~~~A~~~~~~  498 (570)
                      |..|+.+|...|++++|++++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444445555555555555444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.68  E-value=0.48  Score=38.77  Aligned_cols=95  Identities=12%  Similarity=0.043  Sum_probs=73.2

Q ss_pred             HHHHHhcCCHHHHHHHHHhhhhCCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038914          445 IDGLCKHGRLEIAWELFSSLPRVGLMAD-----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLGF  518 (570)
Q Consensus       445 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~  518 (570)
                      ..-+...|++++|..-|..++.. +++.     ...|..-..++.+.+.++.|+.-..+.++.  .|+ ...+..-..+|
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeay  178 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAY  178 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHH
Confidence            55678899999999999999885 2332     234666777888999999999999998884  453 34455556788


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          519 IRNNETSKVIELLHRMDMRNVMPDAS  544 (570)
Q Consensus       519 ~~~g~~~~a~~~~~~~~~~~~~p~~~  544 (570)
                      .+..++++|++-|+++.+.  .|...
T Consensus       179 ek~ek~eealeDyKki~E~--dPs~~  202 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILES--DPSRR  202 (271)
T ss_pred             HhhhhHHHHHHHHHHHHHh--CcchH
Confidence            9999999999999999965  35543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.67  E-value=3.9  Score=34.70  Aligned_cols=17  Identities=18%  Similarity=0.497  Sum_probs=12.1

Q ss_pred             HhcCChHHHHHHHHHHH
Q 038914           86 AKTKHYDTVLSLFKRLN  102 (570)
Q Consensus        86 ~~~g~~~~A~~~~~~~~  102 (570)
                      .-.+.+++|.++|.++.
T Consensus        25 gg~~k~eeAadl~~~Aa   41 (288)
T KOG1586|consen   25 GGSNKYEEAAELYERAA   41 (288)
T ss_pred             CCCcchHHHHHHHHHHH
Confidence            34567888888887765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.49  E-value=0.098  Score=28.73  Aligned_cols=28  Identities=29%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      ++..++.++.+.|++++|++.|+++++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5677888999999999999999999887

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.42  E-value=0.99  Score=39.93  Aligned_cols=78  Identities=17%  Similarity=0.180  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh-----CCCCCChhhHHH
Q 038914          404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR-----VGLMADVVTYNI  478 (570)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~  478 (570)
                      .++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            455667777788888888888888888776 67788888888888888888888888877654     466776666555


Q ss_pred             HHHH
Q 038914          479 MIHG  482 (570)
Q Consensus       479 l~~~  482 (570)
                      +...
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.38  E-value=3.1  Score=35.42  Aligned_cols=128  Identities=15%  Similarity=0.130  Sum_probs=88.4

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC  119 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  119 (570)
                      +.....|.......+++.|+..|-+++..+|  ....-|..-+.++.+.++++.+..--.+++..  .|+..--...+..
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP--~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~   86 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINP--TVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQ   86 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHH
Confidence            4555678778888899999999999999988  55566778888999999999999988888876  6665544444443


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhc----CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVF----GCEPDVFTYNTLINGLCRTGHTIVALNLFEE  177 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (570)
                      +      +.....+++|+..+.+....    .+.+.......|..+--+.=...+..++.++
T Consensus        87 ~------~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~  142 (284)
T KOG4642|consen   87 W------LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE  142 (284)
T ss_pred             H------HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence            3      34457899999999987432    2233344555555543333334444444444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.31  E-value=0.71  Score=37.34  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-----------HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ  122 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (570)
                      .+++|+.-|+.++..+|  ....++..++.++...+           .|++|...|+++...  .|+...|...+.... 
T Consensus        50 miedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-  124 (186)
T PF06552_consen   50 MIEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-  124 (186)
T ss_dssp             HHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-
Confidence            46789999999999999  67788888888776544           266777777777776  899999998887653 


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcC
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFG  147 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~  147 (570)
                                  +|-.++.++.+.+
T Consensus       125 ------------kap~lh~e~~~~~  137 (186)
T PF06552_consen  125 ------------KAPELHMEIHKQG  137 (186)
T ss_dssp             ------------THHHHHHHHHHSS
T ss_pred             ------------hhHHHHHHHHHHH
Confidence                        4667777776654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.26  E-value=3.3  Score=32.65  Aligned_cols=125  Identities=16%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914          372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH  451 (570)
Q Consensus       372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  451 (570)
                      ..++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....+..      ..+......++..|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            445555555666666777776666654 355566666776666543 3333344331      12233344456666666


Q ss_pred             CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914          452 GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND-GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI  519 (570)
Q Consensus       452 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  519 (570)
                      +-++++.-++.++..         +...+..+... ++++.|.+++.+-      .+...|..++..+.
T Consensus        83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            666666666665532         12223333333 5666666655431      24556666655544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.19  E-value=3.6  Score=32.83  Aligned_cols=52  Identities=19%  Similarity=-0.017  Sum_probs=27.9

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .+.++.+.+..++..+.... |-....-..-...+...|++.+|.++|+++..
T Consensus        21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            34556666666666665543 22222222233345566666666666666654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.08  E-value=1.4  Score=36.44  Aligned_cols=97  Identities=16%  Similarity=0.085  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHH--H
Q 038914          439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV--VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFN--T  513 (570)
Q Consensus       439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~  513 (570)
                      ..+..++..|.+.|+.+.|.+.|.++.+....+..  ..+..+++.....|++..+...+.++...--.+ |...-+  .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34666777788888888888888887775434332  456677777777888888887777665431111 111111  1


Q ss_pred             HH--HHHHhcCCHHHHHHHHHHHH
Q 038914          514 LM--LGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       514 l~--~~~~~~g~~~~a~~~~~~~~  535 (570)
                      ..  -.+...|++.+|-+.|-+..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            11  23456788888888776665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.91  E-value=0.96  Score=37.11  Aligned_cols=98  Identities=13%  Similarity=0.148  Sum_probs=73.0

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914           42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPP---VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN  118 (570)
Q Consensus        42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  118 (570)
                      ...-|..++++|++.+|..-|..++..-|..+.   ...|..-+.++.+.+.++.|+.-..+++..+  |.   |..   
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pt---y~k---  169 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PT---YEK---  169 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--ch---hHH---
Confidence            455788889999999999999999998773222   2356667788999999999999999999874  32   221   


Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhcC
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVFG  147 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (570)
                      ++.+....|-+...+++|+.-|.++.+..
T Consensus       170 Al~RRAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  170 ALERRAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            11122233445579999999999998873

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.90  E-value=0.15  Score=28.42  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=9.5

Q ss_pred             CChhhHHHHHHHHHhcCCHHHH
Q 038914          436 LNIVSYNCLIDGLCKHGRLEIA  457 (570)
Q Consensus       436 ~~~~~~~~l~~~~~~~g~~~~A  457 (570)
                      -+..+|+.+...|...|++++|
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhh
Confidence            3344444444444444444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.82  E-value=0.26  Score=27.28  Aligned_cols=26  Identities=12%  Similarity=0.132  Sum_probs=10.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          476 YNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       476 ~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      |..++.+|...|++++|+..|+++++
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            33344444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.81  E-value=3.4  Score=31.50  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=28.7

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038914          373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK  433 (570)
Q Consensus       373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  433 (570)
                      ..+..+...|+-+...+++..+.+.+ .+++..+..+..+|.+.|+..++.+++.++-+.|
T Consensus        91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            33444455555555555555554422 4455555555556666666666665555555544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.62  E-value=1.2  Score=38.72  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914          280 DGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK  313 (570)
Q Consensus       280 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  313 (570)
                      +-+++++++|...|+.||..+-..+++++.+.+-
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            3466777777777777777777777777766554

>PRK09687 putative lyase; Provisional

Probab=92.56  E-value=7.7  Score=34.99  Aligned_cols=137  Identities=14%  Similarity=0.067  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914          402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RLEIAWELFSSLPRVGLMADVVTYNIMI  480 (570)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~  480 (570)
                      +..+-...+.++.+.++. .+...+-.+..   .++..+-...+.++...+ +...+...+..+..   .++..+-...+
T Consensus       141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~  213 (280)
T PRK09687        141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI  213 (280)
T ss_pred             CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence            455555666666666653 44455444443   334444444444555442 23455555555554   34666666677


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLV  554 (570)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  554 (570)
                      .++.+.|+ ..|...+.+..+.+   +  .....+.++...|.. +|+..+.++.+.  .||..+....++++.
T Consensus       214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            77777776 45666666665532   2  234556677777774 677788877753  357666666666654

>PRK11619 lytic murein transglycosylase; Provisional

Probab=92.55  E-value=14  Score=37.96  Aligned_cols=47  Identities=11%  Similarity=-0.090  Sum_probs=23.9

Q ss_pred             HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914          447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLF  496 (570)
Q Consensus       447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  496 (570)
                      .+...|....|...+..+.+.   .+......+.......|.++.++...
T Consensus       416 ~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~  462 (644)
T PRK11619        416 ELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT  462 (644)
T ss_pred             HHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            444556666666666665552   23333344444444555555555443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.55  E-value=13  Score=37.57  Aligned_cols=183  Identities=15%  Similarity=0.088  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHh-------cCCCCCcchHHHHHHHHH
Q 038914           91 YDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRV-------FGCEPDVFTYNTLINGLC  163 (570)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~  163 (570)
                      ...|.++++.+.+.|..   .....+...+ ..| .+....+++.|+.+|+.+.+       .+   ...+...+..+|.
T Consensus       228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y-~~G-~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~  299 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHS---EAQYALGICY-LAG-TYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL  299 (552)
T ss_pred             hhHHHHHHHHHHhhcch---HHHHHHHHHH-hhc-cccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence            46788999988887531   1111111111 111 14456799999999998876       44   4456667788877


Q ss_pred             hcC-----ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914          164 RTG-----HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK-KGFVDKAKELFLKMKDENINPNAVTYTSLICG  237 (570)
Q Consensus       164 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  237 (570)
                      +..     +...|..++.+....+       .|+.......+..... ..+...|.++|......|..   ..+-.+..+
T Consensus       300 ~g~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~  369 (552)
T KOG1550|consen  300 QGLGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALC  369 (552)
T ss_pred             cCCCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHH
Confidence            643     6677999999988876       3444333322222222 24578999999999888743   222223322


Q ss_pred             HH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 038914          238 FC----YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRG  293 (570)
Q Consensus       238 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  293 (570)
                      |.    ...+.+.|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+...+
T Consensus       370 y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  370 YELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            22    23477888999988888762 222222223333333 67777777666666654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.51  E-value=13  Score=37.53  Aligned_cols=178  Identities=15%  Similarity=0.109  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhc
Q 038914          209 VDKAKELFLKMKDENINPNAVTYTSLICG-----FCYANDWNEAKHLFIEMMD-------QGVQPNVVTFTVIMDELCKN  276 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  276 (570)
                      ...|.++++...+.|.   ...-..+..+     +....+.+.|+.+++.+.+       .+   .......+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            4678888888887763   3322222222     3356788999999988876       44   334556667777664


Q ss_pred             C-----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hc
Q 038914          277 G-----KMDGASRLLELMILRGVKPDTSTYNTLIDGYCL-TGKIDRARELFVSMESNGCMHDVVSYSILINGYC----KT  346 (570)
Q Consensus       277 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  346 (570)
                      .     +.+.|..++...-..| .|+.......+..... ..+...|.++|......|..   ..+-.+..+|.    -.
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence            3     4556888888777765 3343333222222222 24567888888888777632   22222222222    23


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 038914          347 KDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH  398 (570)
Q Consensus       347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  398 (570)
                      .+.+.|..++.+..+.| .|........+..+.. ++++.+...+..+...+
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            35677777777777765 2222222222222333 55555555555544443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.30  E-value=2.7  Score=34.71  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTFTVIMDELCKNGKMDGASRLLELMI  290 (570)
Q Consensus       230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  290 (570)
                      .+..+...|++.|+.++|.+.|.++......+.  ...+..+++.....+++..+...+.++.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            344555555555666666665555554422221  2334445555555555555555555444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.20  E-value=4.7  Score=31.64  Aligned_cols=52  Identities=23%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG  105 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  105 (570)
                      .++++++..+++.+.-..|..+....+  -+-.+...|+|.+|+.+|++....+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccC
Confidence            568888888888888888844444433  3445678899999999999888764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.13  E-value=0.36  Score=26.64  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=8.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHH
Q 038914          478 IMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       478 ~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      .++.++...|++++|++.|++.+
T Consensus         6 ~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    6 YLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Confidence            33334444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.11  E-value=2.7  Score=40.91  Aligned_cols=42  Identities=17%  Similarity=0.126  Sum_probs=21.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM  178 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  178 (570)
                      |+++.|.++..+..      +..-|..|..+..+.|++..|.+.|...
T Consensus       651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence            35555555444321      3344555666555666666665555553

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.10  E-value=8.5  Score=36.69  Aligned_cols=39  Identities=10%  Similarity=0.137  Sum_probs=21.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038914          206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW  244 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  244 (570)
                      .+.++...+++..+...|.......++.-+..|.+.|..
T Consensus        30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t   68 (696)
T KOG2471|consen   30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT   68 (696)
T ss_pred             CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence            455666666666666655544444455555555555543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.03  E-value=1.3  Score=35.86  Aligned_cols=115  Identities=17%  Similarity=0.092  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc---C-------ChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhc
Q 038914           55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKT---K-------HYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQN  123 (570)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~  123 (570)
                      ++.|++.++.....+|  .+...++.-+.++...   .       .+++|+.-|++++..  .|+. ..+..+-.++...
T Consensus         7 FE~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence            5678888888888888  7777777666665443   3       334566666666665  5654 3444444445444


Q ss_pred             CC----cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914          124 GS----SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG  181 (570)
Q Consensus       124 ~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  181 (570)
                      +.    .-.....+++|...|++....  +|+...|+.-+....      +|-++..++.+.
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~  136 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ  136 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence            31    112223467777777777765  788899988777653      466666666554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.60  E-value=1.1  Score=40.06  Aligned_cols=93  Identities=11%  Similarity=-0.045  Sum_probs=72.1

Q ss_pred             hcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH
Q 038914          122 QNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID  201 (570)
Q Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (570)
                      ..|..|.++|.|++|+..|...+... +-+.+.+..-..+|.+...+..|..-...+...+       ..-+.+|..-+.
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-------~~Y~KAYSRR~~  173 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-------KLYVKAYSRRMQ  173 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-------HHHHHHHHHHHH
Confidence            46788999999999999999988763 2278888888999999999999988888877654       222445666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC
Q 038914          202 GLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       202 ~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      +-...|+..+|.+-++..+..
T Consensus       174 AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  174 ARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHhhHHHHHHhHHHHHhh
Confidence            666677788888878777764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.16  E-value=0.54  Score=27.45  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=25.0

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      .+++.++..|...|++++|..+++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            57889999999999999999999998754

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.10  E-value=7.2  Score=31.63  Aligned_cols=134  Identities=15%  Similarity=0.090  Sum_probs=71.1

Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          138 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFL  217 (570)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  217 (570)
                      +....+...+.+++...+..++..+.+.|++..-..+++-    .      +-+|.......+-.+  .+....+.++=-
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~------Vi~DSk~lA~~LLs~--~~~~~~~~Ql~l   82 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----H------VIPDSKPLACQLLSL--GNQYPPAYQLGL   82 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----c------ccCCcHHHHHHHHHh--HccChHHHHHHH
Confidence            4455555667777778888888888888887664444443    2      333433333222222  223333444433


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          218 KMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMIL  291 (570)
Q Consensus       218 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  291 (570)
                      .|..+    =...+..+++.+...|++-+|+++.......    +......++.+..+.++...-..+++-...
T Consensus        83 DMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   83 DMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             HHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33332    0112555667777788888887777664322    222234455555566665554444444433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.01  E-value=8  Score=31.99  Aligned_cols=90  Identities=11%  Similarity=0.024  Sum_probs=59.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914          159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDT----VTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL  234 (570)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (570)
                      ...+...+++++|+.-++......        .|.    .+-..|.......|.+++|+.+++...+.+.  .......-
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t--------~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elr  165 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQT--------KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELR  165 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccc--------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHh
Confidence            345667888888888888776532        221    2233456677778888888888877766533  22223344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCC
Q 038914          235 ICGFCYANDWNEAKHLFIEMMDQG  258 (570)
Q Consensus       235 ~~~~~~~~~~~~a~~~~~~~~~~~  258 (570)
                      .+.+...|+-++|..-|++....+
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHcc
Confidence            567778888888888888777764

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.97  E-value=38  Score=39.69  Aligned_cols=152  Identities=8%  Similarity=-0.014  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKDENIN--PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK  275 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (570)
                      .+..+-.+.+.+.+|...+++-.....+  .....+..+...|...++++....+......     +... ...+.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHh
Confidence            5556777888999999999884211111  1233444555689999999988887764221     2222 334445677


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCCHHHHHH
Q 038914          276 NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSI-LINGYCKTKDVEEGLN  354 (570)
Q Consensus       276 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~  354 (570)
                      .|++..|...|+++.+.+ ++...++..++......|.+...+...+...... .+....++. -+.+--+.++++....
T Consensus      1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            899999999999999874 3346677777777777888887777666554432 222222332 2334456677776666


Q ss_pred             HHH
Q 038914          355 LYR  357 (570)
Q Consensus       355 ~~~  357 (570)
                      .+.
T Consensus      1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred             hhh
Confidence            554

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.89  E-value=7.5  Score=31.51  Aligned_cols=29  Identities=14%  Similarity=0.359  Sum_probs=14.1

Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 038914          252 IEMMDQGVQPNVVTFTVIMDELCKNGKMD  280 (570)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  280 (570)
                      ..+.+.+++|+...+..++..+.+.|++.
T Consensus        18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~   46 (167)
T PF07035_consen   18 RSLNQHNIPVQHELYELLIDLLIRNGQFS   46 (167)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence            33334445555555555555555555433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.45  E-value=0.76  Score=25.31  Aligned_cols=29  Identities=14%  Similarity=0.212  Sum_probs=26.3

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      .+|..++..+...|++++|.+.|+++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46888999999999999999999999875

...

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.24  E-value=12  Score=32.66  Aligned_cols=156  Identities=9%  Similarity=0.086  Sum_probs=84.4

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHhhHHHHHHHHHhc
Q 038914          240 YANDWNEAKHLFIEMMDQGVQPNV---VTFTVIMDELCKNGKMDGASRLLELMILR---GV--KPDTSTYNTLIDGYCLT  311 (570)
Q Consensus       240 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~  311 (570)
                      +..+.++|+.-|++..+.......   .+...++....+.+++++....+.+++.-   .+  ..+....+.++......
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            344678888888888775332222   33445677788888888888888777532   11  12334555666655555


Q ss_pred             CCHHHHHHHHHHHHhC-CCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----C-------hhhHHHHH
Q 038914          312 GKIDRARELFVSMESN-GCMHDVV----SYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----T-------VVTYHTLF  375 (570)
Q Consensus       312 ~~~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~-------~~~~~~l~  375 (570)
                      .+.+.-...++.-++. .-..+..    +-..+...|...+.+.+..++++++...-...    |       ...|..-+
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            5555555555432221 0001111    22345666666666666666666665531110    1       13344455


Q ss_pred             HHHhhcCCHHHHHHHHHHHH
Q 038914          376 LGLFEVHQVEHALKLFDEMR  395 (570)
Q Consensus       376 ~~~~~~~~~~~a~~~~~~~~  395 (570)
                      +.|...++-.....++++..
T Consensus       199 QmYT~qKnNKkLK~lYeqal  218 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQAL  218 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHH
Confidence            55666666666666665544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.05  E-value=19  Score=34.76  Aligned_cols=165  Identities=15%  Similarity=0.127  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038914          227 NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLID  306 (570)
Q Consensus       227 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  306 (570)
                      |.....+++..+.....+.-+..+..+|...|  -+-..|..++.+|... ..+.-..+++++.+..+. |...-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            44455555566666666666666666665543  2445555566655555 345555566655554322 2222222333


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCC--C---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhh
Q 038914          307 GYCLTGKIDRARELFVSMESNGCMH--D---VVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIRPTVVTYHTLFLGLFE  380 (570)
Q Consensus       307 ~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  380 (570)
                      . ...++...+...|.++...-++.  +   ...|..+...  -..+.+..+.+..++... |..--...+..+..-|..
T Consensus       141 ~-yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 K-YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             H-HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            2 23355555555555554432110  1   1122222221  123444444444444432 222222333444445555


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 038914          381 VHQVEHALKLFDEMRRNH  398 (570)
Q Consensus       381 ~~~~~~a~~~~~~~~~~~  398 (570)
                      ..++++|++++..+.+.+
T Consensus       218 ~eN~~eai~Ilk~il~~d  235 (711)
T COG1747         218 NENWTEAIRILKHILEHD  235 (711)
T ss_pred             ccCHHHHHHHHHHHhhhc
Confidence            555666666665555543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.79  E-value=20  Score=34.62  Aligned_cols=164  Identities=13%  Similarity=0.062  Sum_probs=78.0

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914          332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID  411 (570)
Q Consensus       332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  411 (570)
                      |....-+++..+..+-.+.-...+-.+|..-|  -+-..+..++++|... ..+.-..+|+++.+..+ .|...-..++.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence            44455556666666555555556666665542  2445566666666655 44555666666655432 23333333443


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCC--C---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-CCCCChhhHHHHHHHHHh
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYEL--N---IVSYNCLIDGLCKHGRLEIAWELFSSLPRV-GLMADVVTYNIMIHGLCN  485 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  485 (570)
                      .|.+ ++...+..+|.++...-++.  +   ...|..+...  -..+.+..+++...+... |...-...+..+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            3333 56666666666555432211  0   1123332211  123444555554444432 111122333333344555


Q ss_pred             cCChhHHHHHHHHHHHC
Q 038914          486 DGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       486 ~g~~~~A~~~~~~~~~~  502 (570)
                      ..++++|++++...++.
T Consensus       218 ~eN~~eai~Ilk~il~~  234 (711)
T COG1747         218 NENWTEAIRILKHILEH  234 (711)
T ss_pred             ccCHHHHHHHHHHHhhh
Confidence            55666666666655554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.42  E-value=12  Score=31.38  Aligned_cols=79  Identities=18%  Similarity=0.109  Sum_probs=49.1

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038914          162 LCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---NINPNAVTYTSLICGF  238 (570)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~  238 (570)
                      +.+.|+ +.|...|-.+...+      .-.++.....|+..|. ..+.+++++++-+..+.   +-.+|+..+.+|+..+
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~------~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~  188 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTP------ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIY  188 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCC------CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            445554 56677777666554      2344555555555444 56677777777766653   2355677777777777


Q ss_pred             HhcCCHHHHH
Q 038914          239 CYANDWNEAK  248 (570)
Q Consensus       239 ~~~~~~~~a~  248 (570)
                      .+.|+++.|-
T Consensus       189 ~~~~~~e~AY  198 (203)
T PF11207_consen  189 QKLKNYEQAY  198 (203)
T ss_pred             HHhcchhhhh
Confidence            7777777653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.24  E-value=0.95  Score=26.35  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          475 TYNIMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       475 ~~~~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      +++.++.+|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            44555555555555555555555544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=89.21  E-value=0.79  Score=43.14  Aligned_cols=109  Identities=12%  Similarity=0.141  Sum_probs=83.6

Q ss_pred             hhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914           43 KSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ  122 (570)
Q Consensus        43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (570)
                      ...+...++.+.++.|+..+.++++.+|  ....-|..-+.++.+.+++..|+.=+.++++..  |.      .+.+|.+
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldp--nca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~------~~K~Y~r   77 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDP--NCAIYFANRALAHLKVESFGGALHDALKAIELD--PT------YIKAYVR   77 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCC--cceeeechhhhhheeechhhhHHHHHHhhhhcC--ch------hhheeee
Confidence            3445566778899999999999999988  666666667788999999999999999999873  32      3466666


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLC  163 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (570)
                      .|...-+.+++.+|+..|+.....  .|+-.-....+.-|-
T Consensus        78 rg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   78 RGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDECN  116 (476)
T ss_pred             ccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence            666666667999999999988775  667666666665543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.97  E-value=18  Score=32.96  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 038914          210 DKAKELFLKMKDENINPNAVTYTSLICGFCY--AN----DWNEAKHLFIEMMDQ  257 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~  257 (570)
                      ++...+++.+.+.|++-+..+|.+..-....  ..    ....+..+|+.|.+.
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~  132 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK  132 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence            3445566666666666555554443222222  11    233455666666654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.52  E-value=19  Score=32.76  Aligned_cols=130  Identities=13%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCC-
Q 038914          244 WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK--NG----KMDGASRLLELMILRGV---KPDTSTYNTLIDGYCLTGK-  313 (570)
Q Consensus       244 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-  313 (570)
                      +.+.+.+++.+.+.|...+..+|.+.......  ..    ....+..+|+.|++...   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566777888888877766555543333222  12    23457778888877632   2233344444322  2222 


Q ss_pred             ---HHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914          314 ---IDRARELFVSMESNGCMHDV--VSYSILINGYCKTKD--VEEGLNLYRKMLSKGIRPTVVTYHTLF  375 (570)
Q Consensus       314 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~  375 (570)
                         .+.++.+|+.+.+.|+..+-  .....++.......+  ..++.++++.+.+.|+++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence               34455566666665544322  222333322222222  335666666666666665555544443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.43  E-value=11  Score=29.73  Aligned_cols=52  Identities=15%  Similarity=0.006  Sum_probs=30.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                      ..++++++..+++.+.-.. |-....-..-...+...|++++|.++|+++.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            4667777777777666553 222222222334456677777777777777663

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.39  E-value=9.9  Score=37.33  Aligned_cols=132  Identities=21%  Similarity=0.225  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038914          154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTS  233 (570)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  233 (570)
                      ..+.++..+.++|-.++|+++-               +|...   -.....+.|+++.|.++..+..      +..-|..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s---------------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~  671 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELS---------------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQ  671 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcC---------------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHH
Confidence            3445556666666666665541               22111   1123345667777666655442      4455777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914          234 LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK  313 (570)
Q Consensus       234 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  313 (570)
                      |.+.....+++..|.+.|.....         |..|+-.+...|+-+....+-....+.|.. |..     ..+|...|+
T Consensus       672 Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~A-----F~~~~l~g~  736 (794)
T KOG0276|consen  672 LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLA-----FLAYFLSGD  736 (794)
T ss_pred             HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-chH-----HHHHHHcCC
Confidence            77777777777777776665433         344555566666655555555555554422 322     223445667


Q ss_pred             HHHHHHHHHHH
Q 038914          314 IDRARELFVSM  324 (570)
Q Consensus       314 ~~~a~~~~~~~  324 (570)
                      ++++.+++..-
T Consensus       737 ~~~C~~lLi~t  747 (794)
T KOG0276|consen  737 YEECLELLIST  747 (794)
T ss_pred             HHHHHHHHHhc
Confidence            76666665443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.27  E-value=0.17  Score=45.04  Aligned_cols=95  Identities=12%  Similarity=0.054  Sum_probs=68.7

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      +..|.++.|+..|..++..+|  ++...|..-+.++.+.+++..|+.=+..++..  .||... ..-++.+     ....
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~-~ykfrg~-----A~rl  194 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAK-GYKFRGY-----AERL  194 (377)
T ss_pred             hcCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhcc--Cccccc-ccchhhH-----HHHH
Confidence            567889999999999999988  78888888888999999999999999988877  454421 1111111     1223


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcch
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFT  154 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~  154 (570)
                      .|++++|...+....+.++.+....
T Consensus       195 lg~~e~aa~dl~~a~kld~dE~~~a  219 (377)
T KOG1308|consen  195 LGNWEEAAHDLALACKLDYDEANSA  219 (377)
T ss_pred             hhchHHHHHHHHHHHhccccHHHHH
Confidence            4688888888888777766554443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.17  E-value=34  Score=35.23  Aligned_cols=194  Identities=13%  Similarity=0.057  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCC
Q 038914           56 NDALCVFDYMLNMRPSRPP--VTSFNILFGCLA-KTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESR  132 (570)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  132 (570)
                      .-|++-++.+.+..+-+|.  ..++..++..+. ...+++.|...+++.....-.++-..+.......  ....+.+.+.
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l--l~~i~~~~~~  115 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFL--LARIYFKTNP  115 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH--HHHHHHhcCH
Confidence            4667777777642221233  345677888776 6899999999999987664343322211111100  0122233334


Q ss_pred             HHHHHHHHHHHHhcCCC----CCcchHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH--h
Q 038914          133 IMEAAALFTKLRVFGCE----PDVFTYNTL-INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC--K  205 (570)
Q Consensus       133 ~~~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~  205 (570)
                      .. |...+++.++.--.    +-...+..+ +..+...+++..|++.++.+.......   ..|-...+..++.+..  +
T Consensus       116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~  191 (608)
T PF10345_consen  116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLR  191 (608)
T ss_pred             HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhc
Confidence            44 88888887654211    112233333 233333479999999999987654210   1233444555555444  4


Q ss_pred             cCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 038914          206 KGFVDKAKELFLKMKDEN---------INPNAVTYTSLICGF--CYANDWNEAKHLFIEMM  255 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~  255 (570)
                      .+..+++.+.++++....         ..|...+|..+++.+  ...|+++.+...++++.
T Consensus       192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            465677777777663321         133456666666544  45677777777666554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.73  E-value=0.83  Score=23.43  Aligned_cols=23  Identities=17%  Similarity=0.065  Sum_probs=19.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHH
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFK   99 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~   99 (570)
                      +...++..+...|++++|..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45678889999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.69  E-value=0.96  Score=24.88  Aligned_cols=26  Identities=15%  Similarity=0.051  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          476 YNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       476 ~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      |..++..|...|++++|...|++..+
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33444444444444444444444433

...

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.35  E-value=40  Score=35.17  Aligned_cols=231  Identities=11%  Similarity=-0.004  Sum_probs=123.4

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 038914          163 CRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTII-DGLCKKGFVDKAKELFLKMKDE----NINPNAVTYTSLIC  236 (570)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~  236 (570)
                      ....++++|..++.++...-+..+.....+ ...++.|- .+....|++++|.++.+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            457889999999988876542111000011 11333332 3345678899999988877654    22345666777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-----HHHHHHhcCChh--HHHHHHHHHHHCCC--C----CCHhhHHH
Q 038914          237 GFCYANDWNEAKHLFIEMMDQGVQPNVVTFTV-----IMDELCKNGKMD--GASRLLELMILRGV--K----PDTSTYNT  303 (570)
Q Consensus       237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~--~a~~~~~~~~~~~~--~----~~~~~~~~  303 (570)
                      +..-.|++++|..+.....+..-.-+...+..     -...+..+|+..  +....+........  .    +-..+...
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            88899999999999887766422223333222     233455677333  23333333322210  1    11234444


Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHH
Q 038914          304 LIDGYCLTG-KIDRARELFVSMESNGCMHDVV--SYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----TVVTYHTLFL  376 (570)
Q Consensus       304 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~  376 (570)
                      ++.++.+.. ...++...+.........+-..  .+..++.+....|+.++|...+.++......+    +..+-...+.
T Consensus       586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~  665 (894)
T COG2909         586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK  665 (894)
T ss_pred             HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence            555555411 1222222222222221111111  22367788889999999999999887753332    2222222222


Q ss_pred             H--HhhcCCHHHHHHHHHH
Q 038914          377 G--LFEVHQVEHALKLFDE  393 (570)
Q Consensus       377 ~--~~~~~~~~~a~~~~~~  393 (570)
                      .  ....|+...+.....+
T Consensus       666 ~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         666 LILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHhcccCCHHHHHHHHHh
Confidence            2  2357888777766655

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.33  E-value=6.7  Score=28.01  Aligned_cols=45  Identities=7%  Similarity=-0.003  Sum_probs=21.9

Q ss_pred             HHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          456 IAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       456 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      ++.+-++.+....+.|++....+.+++|.+.+++..|.++++...
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444444555555555555555555555555554443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.31  E-value=5.8  Score=33.08  Aligned_cols=77  Identities=13%  Similarity=0.048  Sum_probs=44.8

Q ss_pred             hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 038914          450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK---GLEPNFVIFNTLMLGFIRNNETSK  526 (570)
Q Consensus       450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~  526 (570)
                      +.|+ +.|.+.|-.+...+.--++.....|+.-| ...+.+++..++.++.+.   +-.+|+..+.+|+..+.+.|+++.
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            3344 55666666666554333444444444333 355677777777666653   224566777777777777777776


Q ss_pred             HH
Q 038914          527 VI  528 (570)
Q Consensus       527 a~  528 (570)
                      |.
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            64

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=86.89  E-value=9.7  Score=27.58  Aligned_cols=47  Identities=6%  Similarity=0.051  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038914          386 HALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL  432 (570)
Q Consensus       386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  432 (570)
                      +..+-+..+...++.|++.+..+.+.+|.+.+++..|.++|+.+...
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444455555556666666666666666666666666666666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.82  E-value=18  Score=34.62  Aligned_cols=107  Identities=20%  Similarity=0.050  Sum_probs=66.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHc---CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhhhh-------CCCCCCh---
Q 038914          412 GLCKNGYIVKAVELFRTLRIL---KYELN-----IVSYNCLIDGLCKHGRLEIAWELFSSLPR-------VGLMADV---  473 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~---  473 (570)
                      .+.-.|++.+|.+++...--.   |....     -..||.+.....+.|.+..+..+|.++.+       .|+.|..   
T Consensus       249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t  328 (696)
T KOG2471|consen  249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT  328 (696)
T ss_pred             HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence            345568888888777654221   11111     12345555555666776666666666553       3444421   


Q ss_pred             --------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038914          474 --------VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR  520 (570)
Q Consensus       474 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  520 (570)
                              .+|| .+-.|...|++-.|.+.|.+.... +.-++..|..+..+|+.
T Consensus       329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM  381 (696)
T ss_pred             hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence                    1232 344577889999999988888775 56688889888888864

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.70  E-value=29  Score=32.77  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=64.8

Q ss_pred             hcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC-----C------------C-CHhhHHHHHHHHH
Q 038914           67 NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST-------GL-----F------------P-DLYAYNILINCFL  121 (570)
Q Consensus        67 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-----~------------~-~~~~~~~~l~~~~  121 (570)
                      +..|  ..+.++..+...+.++|+.+.|.++.++++-.       .+     .            + |...|..+.... 
T Consensus        34 ~~~P--yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i-  110 (360)
T PF04910_consen   34 QKNP--YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI-  110 (360)
T ss_pred             HHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH-
Confidence            4556  88999999999999999999999988887421       11     0            1 111122222211 


Q ss_pred             hcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 038914          122 QNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGL-CRTGHTIVALNLFEEMAN  180 (570)
Q Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~  180 (570)
                         ..+.+.|-+..|+++..-+...++..|+......|..| .+.++++--+++.+....
T Consensus       111 ---~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  111 ---QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             ---HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence               23345567777777666666665444555555555554 355666666666665443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.64  E-value=4  Score=25.54  Aligned_cols=40  Identities=18%  Similarity=0.029  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILIN  118 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  118 (570)
                      ..+.++.++.+.|++++|++..+.+++.  .|+......+-.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence            4566778889999999999999999987  787765554443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.41  E-value=13  Score=33.37  Aligned_cols=50  Identities=12%  Similarity=-0.021  Sum_probs=29.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      -++++++.++..-+..|+-||..+++.+++.+.+.+++.+|.++...|+.
T Consensus       114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            34555555555555555566666666666666666666665555555443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.80  E-value=2  Score=25.59  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=13.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q 038914          514 LMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       514 l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      +..+|...|+.+.|.+++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            45556666666666666666654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>smart00028 TPR Tetratricopeptide repeats

Probab=85.36  E-value=1.6  Score=22.97  Aligned_cols=29  Identities=17%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      .+|..++.++...|+++.|...|++.++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            46778899999999999999999998865

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.33  E-value=2.1  Score=25.52  Aligned_cols=27  Identities=11%  Similarity=0.083  Sum_probs=23.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038914           79 NILFGCLAKTKHYDTVLSLFKRLNSTG  105 (570)
Q Consensus        79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~  105 (570)
                      ..++.+|...|+.+.|++++++.+..|
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            357889999999999999999999754

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.20  E-value=52  Score=34.42  Aligned_cols=306  Identities=15%  Similarity=0.065  Sum_probs=164.3

Q ss_pred             CCCCCCcchhhhHHHhhhhhcc-----hhhHHHHHHHHhhhcCCCC------CCCCChhHHHHHHHHHHhcCCCCCCHHh
Q 038914            9 NEPSYPTTTAKLKESLRLTVKD-----RASLETFLRERFKSSGEGD------ITTITPNDALCVFDYMLNMRPSRPPVTS   77 (570)
Q Consensus         9 ~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~g~~~~A~~~~~~~~~~~~~~~~~~~   77 (570)
                      ..+.|-.....+.+-++..+..     +++++-...+-+..+|...      +..|+++-|..++++....-+...+...
T Consensus       319 d~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsl  398 (894)
T COG2909         319 DEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSL  398 (894)
T ss_pred             CCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHH
Confidence            4667777777777665554444     3455555555566666433      6789999998888876221111111111


Q ss_pred             H-----------------HHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CCcchhhCCHHHHH
Q 038914           78 F-----------------NILFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN-GSSLCVESRIMEAA  137 (570)
Q Consensus        78 ~-----------------~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~A~  137 (570)
                      .                 ..+..  ....+.++.+|..+..++...-..|+......+...+... +......|++++|.
T Consensus       399 l~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~  478 (894)
T COG2909         399 LLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAE  478 (894)
T ss_pred             HHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHH
Confidence            1                 11222  3456789999999998887653333322111111111000 01223368999999


Q ss_pred             HHHHHHHhcC----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH-----HHHHHHHhcCC
Q 038914          138 ALFTKLRVFG----CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT-----TIIDGLCKKGF  208 (570)
Q Consensus       138 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~  208 (570)
                      ++-+.....=    ..+....+..+..+..-.|++++|..+.....+..      ..-++..+.     .-...+..+|+
T Consensus       479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a------~~~~~~~l~~~~~~~~s~il~~qGq  552 (894)
T COG2909         479 DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA------RQHDVYHLALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH------HHcccHHHHHHHHHHHHHHHHHhhH
Confidence            9988877541    22344556677777788899999999988887753      222333222     22345667784


Q ss_pred             HHH--HHHHHHHHHhCC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhH--HHHHHHHH
Q 038914          209 VDK--AKELFLKMKDEN---IN---PNAVTYTSLICGFCYANDWNEAKHLFIEMM----DQGVQPNVVTF--TVIMDELC  274 (570)
Q Consensus       209 ~~~--a~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~--~~l~~~~~  274 (570)
                      ...  .+..|.......   .+   +-..++..+..++.+   .+.+..-...-.    .....|-....  ..++....
T Consensus       553 ~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~  629 (894)
T COG2909         553 VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF  629 (894)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH
Confidence            333  333343333221   11   122334444444444   333332222222    22122222222  36777888


Q ss_pred             hcCChhHHHHHHHHHHHCCCCC----CHhhHHHH--HHHHHhcCCHHHHHHHHHH
Q 038914          275 KNGKMDGASRLLELMILRGVKP----DTSTYNTL--IDGYCLTGKIDRARELFVS  323 (570)
Q Consensus       275 ~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l--~~~~~~~~~~~~a~~~~~~  323 (570)
                      ..|++++|...++++......+    +.......  +......|+...+..+..+
T Consensus       630 ~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         630 LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            8999999999998887643222    22121222  2334567787777776655

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=85.12  E-value=89  Score=36.98  Aligned_cols=150  Identities=9%  Similarity=0.027  Sum_probs=95.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914          233 SLICGFCYANDWNEAKHLFIEM----MDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY  308 (570)
Q Consensus       233 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  308 (570)
                      .+..+-.+.+.+.+|.-.++.-    .+.  .-....+..+...|...++++....+...-..     +...+ .-+...
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEH 1459 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHH
Confidence            4555667888999999998883    221  11223344555599999999998888775221     22222 334456


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHhhcCCHHHH
Q 038914          309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVT-YHTLFLGLFEVHQVEHA  387 (570)
Q Consensus       309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a  387 (570)
                      ...|+++.|...|+.+.+.+ ++....++.++......|.++..+...+-.... ..+.... .+.-..+-.+.++++..
T Consensus      1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred             HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence            67899999999999999886 334677888887777788888877766555443 1111211 22223333566777766


Q ss_pred             HHHHH
Q 038914          388 LKLFD  392 (570)
Q Consensus       388 ~~~~~  392 (570)
                      .....
T Consensus      1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred             hhhhh
Confidence            66544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.96  E-value=21  Score=29.66  Aligned_cols=90  Identities=6%  Similarity=-0.051  Sum_probs=58.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914          444 LIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY-----NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF  518 (570)
Q Consensus       444 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  518 (570)
                      +...+...|++++|...++.....   |....+     -.|.+.....|.+++|+..+......+.  .......-.+.+
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil  169 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence            345567778888888888877653   222222     2355667778888888888776655321  222234445678


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 038914          519 IRNNETSKVIELLHRMDMRN  538 (570)
Q Consensus       519 ~~~g~~~~a~~~~~~~~~~~  538 (570)
                      ...|+.++|+.-|++.+..+
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         170 LAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHcCchHHHHHHHHHHHHcc
Confidence            88888888888888888654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.73  E-value=1.8  Score=23.43  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=14.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          512 NTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       512 ~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      ..+..++.+.|++++|.+.++++++
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3445555566666666666666654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=84.55  E-value=12  Score=26.65  Aligned_cols=63  Identities=17%  Similarity=0.146  Sum_probs=44.7

Q ss_pred             HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhc
Q 038914           59 LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQN  123 (570)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~  123 (570)
                      +..++..++.+|  .+..+...++..+...|++++|++.+-.+++..... +...-..++..+.-.
T Consensus         8 ~~al~~~~a~~P--~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    8 IAALEAALAANP--DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            456777778888  888999999999999999999999999999885443 233334444444433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.13  E-value=38  Score=31.88  Aligned_cols=53  Identities=17%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          159 INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD  221 (570)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  221 (570)
                      ..+..+.|+++...+........        .++...+..+...  +.|+++++...++.+..
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~~~--------~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSNED--------SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhccCC--------ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            45666778877744444443321        1233344444333  67777777777776654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.97  E-value=20  Score=32.18  Aligned_cols=48  Identities=17%  Similarity=0.252  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914          348 DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR  395 (570)
Q Consensus       348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  395 (570)
                      +.++++.++..=+.-|+.||..++..++..+.+.+++.+|..+.-.|.
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555544443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.88  E-value=56  Score=33.69  Aligned_cols=183  Identities=15%  Similarity=0.095  Sum_probs=107.4

Q ss_pred             HHHHHHHHHH-hcCCCCCc--chHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccCCCh-----hhHHHHHHHHHh
Q 038914          135 EAAALFTKLR-VFGCEPDV--FTYNTLINGLC-RTGHTIVALNLFEEMANGNGEIGVVCKPDT-----VTYTTIIDGLCK  205 (570)
Q Consensus       135 ~A~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~  205 (570)
                      .|++.++.+. ...++|..  .++..++..+. ...+++.|+..+++......      .++.     .....++..+.+
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~  112 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFK  112 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHh
Confidence            4666666666 33333333  34556667665 67899999999998866541      2221     223456677777


Q ss_pred             cCCHHHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHH--h
Q 038914          206 KGFVDKAKELFLKMKDE----NINPNAVTYTSL-ICGFCYANDWNEAKHLFIEMMDQG---VQPNVVTFTVIMDELC--K  275 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~  275 (570)
                      .+... |...+++.++.    +..+-...+..+ +..+...++...|.+.++.+....   ..|...++..++.+..  .
T Consensus       113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~  191 (608)
T PF10345_consen  113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR  191 (608)
T ss_pred             cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence            77666 88888886653    111222333333 233333479999999998887642   2333344444444433  4


Q ss_pred             cCChhHHHHHHHHHHHCCC---------CCCHhhHHHHHHHH--HhcCCHHHHHHHHHHH
Q 038914          276 NGKMDGASRLLELMILRGV---------KPDTSTYNTLIDGY--CLTGKIDRARELFVSM  324 (570)
Q Consensus       276 ~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~  324 (570)
                      .+..+++.+.++++.....         .|...++..+++.+  ...|+++.+...++++
T Consensus       192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5667777777777643211         23345666666544  4667777776665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK09687 putative lyase; Provisional

Probab=83.28  E-value=35  Score=30.86  Aligned_cols=176  Identities=9%  Similarity=0.013  Sum_probs=70.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhhHH
Q 038914          192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW----NEAKHLFIEMMDQGVQPNVVTFT  267 (570)
Q Consensus       192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~  267 (570)
                      |.......+..+...|. +++...+..+...   +|...-...+.++...|+.    .++...+..+...  .++..+..
T Consensus        36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~  109 (280)
T PRK09687         36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA  109 (280)
T ss_pred             CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence            34444444444544443 2233333333322   2444444455555555542    3455555544322  23444443


Q ss_pred             HHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914          268 VIMDELCKNGKM-----DGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING  342 (570)
Q Consensus       268 ~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  342 (570)
                      ..+.++...+..     ..+...+..+..   .++..+-...+.++...++ ..+...+-.+.+.   ++..+-...+.+
T Consensus       110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a  182 (280)
T PRK09687        110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA  182 (280)
T ss_pred             HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence            444444333211     112222222222   2233444444555555544 3344444444432   233333333333


Q ss_pred             HHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC
Q 038914          343 YCKTK-DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ  383 (570)
Q Consensus       343 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  383 (570)
                      +...+ +...+...+..+...   ++...-...+.++.+.++
T Consensus       183 Lg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~  221 (280)
T PRK09687        183 LNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD  221 (280)
T ss_pred             HhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC
Confidence            43332 123444444444432   244444444455555554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=82.38  E-value=16  Score=26.47  Aligned_cols=44  Identities=7%  Similarity=0.015  Sum_probs=18.9

Q ss_pred             HHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          457 AWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       457 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      ..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+...
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33344444444444455555555555555555555555544443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.08  E-value=13  Score=31.36  Aligned_cols=75  Identities=19%  Similarity=0.115  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 038914          156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDEN--INPNAVTYTS  233 (570)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~  233 (570)
                      +..++.+.+.++..+|+.+.+.-.+..       +.|...-..+++.++-.|++++|..-++-.-...  ..+-...|..
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~   77 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH   77 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence            344555666667777777666666653       3445556666666777777777766555444321  2223444555


Q ss_pred             HHHH
Q 038914          234 LICG  237 (570)
Q Consensus       234 l~~~  237 (570)
                      ++.+
T Consensus        78 lir~   81 (273)
T COG4455          78 LIRC   81 (273)
T ss_pred             HHHH
Confidence            4443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=82.07  E-value=4.4  Score=29.26  Aligned_cols=54  Identities=13%  Similarity=0.059  Sum_probs=36.7

Q ss_pred             CCCChhHHHHHHHHHH----hcCCCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           51 TTITPNDALCVFDYML----NMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~----~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      +.|++.+|++.+.+..    ......   .-..+...++......|++++|+..++++++.
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4678888866555544    333211   11234455777888999999999999999876

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.05  E-value=28  Score=30.84  Aligned_cols=87  Identities=14%  Similarity=0.034  Sum_probs=49.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----
Q 038914          340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----  415 (570)
Q Consensus       340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  415 (570)
                      |++++..+++.+++...-+..+.--+.-.......|-.|.+.+....+.++-......--.-+..-|..++..|..    
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            5677777777777665555444311222344455556667777777777776666553222222335555554443    


Q ss_pred             -cCCHHHHHHHH
Q 038914          416 -NGYIVKAVELF  426 (570)
Q Consensus       416 -~~~~~~a~~~~  426 (570)
                       .|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence             57777776665

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=81.16  E-value=47  Score=30.85  Aligned_cols=118  Identities=8%  Similarity=-0.041  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh---cCChhHHHHHH
Q 038914          420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN---DGQMDKAHGLF  496 (570)
Q Consensus       420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~  496 (570)
                      +.-+.+++++.+.+ +.+...+..++..+.+..+.++..+.|+++.... +-+...|...+.....   .-.++....+|
T Consensus        48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y  125 (321)
T PF08424_consen   48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY  125 (321)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            44456666666664 4556666666777777777777777777777642 2244556555554433   22455555555


Q ss_pred             HHHHHC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914          497 LDMEAK------GL------EPN-----FVIFNTLMLGFIRNNETSKVIELLHRMDMRNV  539 (570)
Q Consensus       497 ~~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  539 (570)
                      .+.+..      +.      .++     ...+..+...+..+|..+.|..+++-+++.++
T Consensus       126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            554331      11      011     11223333344568999999999998887665

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=81.01  E-value=36  Score=29.42  Aligned_cols=121  Identities=12%  Similarity=0.007  Sum_probs=80.5

Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTII  200 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  200 (570)
                      .|.-+....+++.|+..|.+.+..  .|++ .-|..-+..+.+..+++.+..-..+..+..        |+ +.....+.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--------~N~vk~h~flg   85 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--------PNLVKAHYFLG   85 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHHHHHHHHHH
Confidence            344455567899999988888876  5565 446667888888999999988888888753        44 44556677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          201 DGLCKKGFVDKAKELFLKMKDE----NINPNAVTYTSLICGFCYANDWNEAKHLFIE  253 (570)
Q Consensus       201 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  253 (570)
                      .+......+++|+..+.+....    .+.+-......|..+--..=...+..++.++
T Consensus        86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~  142 (284)
T KOG4642|consen   86 QWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE  142 (284)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence            7778888899999988887443    2334444555555443333333444444433

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.00  E-value=16  Score=30.90  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=9.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHH
Q 038914          265 TFTVIMDELCKNGKMDGASRLLE  287 (570)
Q Consensus       265 ~~~~l~~~~~~~g~~~~a~~~~~  287 (570)
                      +-..++..++-.|++++|..-++
T Consensus        37 ~RhflfqLlcvaGdw~kAl~Ql~   59 (273)
T COG4455          37 GRHFLFQLLCVAGDWEKALAQLN   59 (273)
T ss_pred             chhHHHHHHhhcchHHHHHHHHH
Confidence            33334444444444444443333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=80.91  E-value=50  Score=31.04  Aligned_cols=64  Identities=17%  Similarity=0.060  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL---NIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      ..++..++..+.+.|.++.|...+..+...+...   .+.+...-+......|+..+|...++....
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555566666666666666666655432111   223333334445556666666666555544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.56  E-value=13  Score=31.93  Aligned_cols=100  Identities=14%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             HHHhhhcCCCCCCCCChhHHHHHHHHHHh--------cCCCC--------CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038914           39 RERFKSSGEGDITTITPNDALCVFDYMLN--------MRPSR--------PPVTSFNILFGCLAKTKHYDTVLSLFKRLN  102 (570)
Q Consensus        39 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--------~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  102 (570)
                      .......|+.+++.|++.+|..-|+.++.        ..|..        .....+....+++...|++-++++...+.+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            45566788999999999999888887752        23311        112244556667777788888888877777


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914          103 STGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF  146 (570)
Q Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (570)
                      +.  .|+..      .+|.+.++.....-+.++|..-|..+++.
T Consensus       258 ~~--~~~nv------KA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 RH--HPGNV------KAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             hc--CCchH------HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            76  33321      23333333333345777777777777765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=80.54  E-value=6.1  Score=35.57  Aligned_cols=66  Identities=14%  Similarity=0.084  Sum_probs=45.7

Q ss_pred             HHHHhhhcCCCCCCCCChhHHHHHHHHHHhc---CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           38 LRERFKSSGEGDITTITPNDALCVFDYMLNM---RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        38 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      +.+.+...|.-..+..+|..|...|...++.   +| .-+...|+.-+.+....|++..|+.=...++..
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4466677777777777777777777777754   33 344556777777777777777777777777765

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=80.15  E-value=46  Score=30.17  Aligned_cols=54  Identities=11%  Similarity=0.148  Sum_probs=23.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDENINPNA---VTYTSLICGFCYANDWNEAKHLFIEM  254 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~  254 (570)
                      |..+..+.|+..+|.+.|+.+.+. + |-.   .....|+.++....-+.++..++.+.
T Consensus       281 LAMCARklGrlrEA~K~~RDL~ke-~-pl~t~lniheNLiEalLE~QAYADvqavLakY  337 (556)
T KOG3807|consen  281 LAMCARKLGRLREAVKIMRDLMKE-F-PLLTMLNIHENLLEALLELQAYADVQAVLAKY  337 (556)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhh-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333444445555555555544432 1 111   12223444444444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	570
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-19
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 89.9 bits (221), Expect = 7e-19
 Identities = 24/243 (9%), Positives = 72/243 (29%), Gaps = 9/243 (3%)

Query: 130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC 189
           +  +    A   +                      T    +A +L         +  +  
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-- 162

Query: 190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEA-K 248
                 Y  ++ G  ++G   +   +   +KD  + P+ ++Y + +      +      +
Sbjct: 163 -LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221

Query: 249 HLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY 308
               +M  +G++   +   V++ E  +   +    ++     L    P     + L+   
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281

Query: 309 CLTGKIDRARELFVSMESNGCMHDV-----VSYSILINGYCKTKDVEEGLNLYRKMLSKG 363
                     +L + +++  C+ +      ++  + +    K     + +   RK L   
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTL 341

Query: 364 IRP 366
              
Sbjct: 342 RDQ 344

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 86.0 bits (211), Expect = 1e-17
 Identities = 21/219 (9%), Positives = 56/219 (25%), Gaps = 4/219 (1%)

Query: 212 AKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMD 271
           A  L    +    +P       L+         +  +    +     +            
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 272 ELCKNGKMDGASRLLEL---MILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNG 328
                 ++  A  LL +      +        YN ++ G+   G       +   ++  G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195

Query: 329 CMHDVVSYSILINGYCKTKDVEEGLNLY-RKMLSKGIRPTVVTYHTLFLGLFEVHQVEHA 387
              D++SY+  +    +       +     +M  +G++   +    L         ++  
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255

Query: 388 LKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELF 426
            K+                +  +  +      V   +L 
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 76.4 bits (186), Expect = 1e-14
 Identities = 17/190 (8%), Positives = 49/190 (25%), Gaps = 4/190 (2%)

Query: 357 RKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRR---NHVAANTYIYTTFIDGL 413
            +     +          F       Q+  A  L                 +Y   + G 
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175

Query: 414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGR-LEIAWELFSSLPRVGLMAD 472
            + G   + V +   ++      +++SY   +  + +  +           + + GL   
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235

Query: 473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLH 532
            +   +++        +   H +          P  V  + L+      +      +L  
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295

Query: 533 RMDMRNVMPD 542
            +     + +
Sbjct: 296 PLKTLQCLFE 305

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 61.4 bits (147), Expect = 6e-10
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 466 RVGLMADVVTYNIMIHGLCNDGQMDKAHGLFL---DMEAKGLEPNFVIFNTLMLGFIRNN 522
           +  L                  Q+  AH L +       K       ++N +MLG+ R  
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179

Query: 523 ETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQF 566
              +++ +L  +    + PD  + +  +  + + +    +I + 
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 55.2 bits (131), Expect = 4e-08
 Identities = 32/287 (11%), Positives = 70/287 (24%), Gaps = 22/287 (7%)

Query: 55  PNDALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA 112
              A  +       R  R    +  +N +    A+   +  ++ +   +   GL PDL +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202

Query: 113 YNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVAL 172
           Y   + C  +                   ++   G +        L++   R        
Sbjct: 203 YAAALQCMGRQD------QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256

Query: 173 NLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT 232
            +    +           P  V  + ++  +  K       +L L +K          + 
Sbjct: 257 KVKPTFSLP------PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHM 310

Query: 233 SLICGFCYAN------DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLL 286
            L    C  +         E KH    +     Q        + +   +  +     R  
Sbjct: 311 ELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFS 370

Query: 287 ELMILRGVKPDTSTYNTL--IDGYCLTGKIDRARELFVSMESNGCMH 331
               L  +         L  +      G+        +S  +     
Sbjct: 371 LYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHV 417

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 90/598 (15%), Positives = 176/598 (29%), Gaps = 174/598 (29%)

Query: 10  EPSYPTTTAKLKESLRLTVKDRASLETFLRERFKSSGE----GDITTITPNDALCVFDYM 65
             +Y    + +K   R             R+R  +  +     +++ + P   L     +
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKL--RQAL 144

Query: 66  LNMRPSRPPVTSFNILFG-------CLAKTKHYDTVLSL-FKRLNSTGLF---------P 108
           L +RP++       ++ G        +A     D  LS   +      +F         P
Sbjct: 145 LELRPAK-----NVLIDGVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 109 DLYAYNILINCFLQNGSSLCVESRIMEAA-----ALFTKLRVFGCEP----------DVF 153
           +     +L     Q   +    S           ++  +LR                +V 
Sbjct: 196 ET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 154 TYNTL--INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV-D 210
                   N  C+         L   +     ++       T T+ ++           D
Sbjct: 255 NAKAWNAFNLSCKI--------L---LTTRFKQVTDFLSAATTTHISLDHH--SMTLTPD 301

Query: 211 KAKELFLK---MKDE-------NINPNAVTYTSLICGFC--YANDWNEAKHLFIEMMDQG 258
           + K L LK    + +         NP  +   S+I          W+  KH+  + +   
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLT-- 356

Query: 259 VQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRAR 318
                   T+I  E   N        +LE    R +             +          
Sbjct: 357 --------TII--ESSLN--------VLEPAEYRKM-------------F---------D 376

Query: 319 ELFVSMESNGCMHDV-VSYSIL--INGYCKTKDVEEGLN-LYRK-MLSKGIRPTVVTYHT 373
            L V            +   +L  I       DV   +N L++  ++ K  + + ++  +
Sbjct: 377 RLSVFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 374 LFL-------GLFEVHQ--VEH--ALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKA 422
           ++L         + +H+  V+H    K FD         + Y Y + I      G+ +K 
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-SHI------GHHLKN 483

Query: 423 VE------LFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY 476
           +E      LFR +    + L+   +  L   +        AW    S+  +  +  +  Y
Sbjct: 484 IEHPERMTLFRMV----F-LD---FRFLEQKIRHDS---TAWNASGSI--LNTLQQLKFY 530

Query: 477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIF-NTLMLGFIRNNETSKVIELLHR 533
              I    ND + ++     LD     +E N +    T +L      E   + E  H+
Sbjct: 531 KPYICD--NDPKYERLVNAILDF-LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	570
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.75
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.7
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.68
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.67
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.59
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.46
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.45
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.38
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.33
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.27
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.25
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.25
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.23
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.22
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.2
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.17
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.16
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.14
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.12
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.11
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.1
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.1
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.0
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.91
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.89
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.87
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.86
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.86
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.85
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.84
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.84
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.82
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.8
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.76
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.73
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.73
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.71
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.68
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.68
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.65
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.65
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.58
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.55
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.54
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.52
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.47
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.47
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.46
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.32
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.3
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.27
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.27
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.23
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.22
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.22
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.21
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.21
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.18
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.13
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.1
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.02
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.0
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.92
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.88
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.81
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.78
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.74
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.63
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.47
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.4
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.3
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.25
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.21
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.18
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.1
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.92
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.54
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.51
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.42
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.4
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.21
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.12
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.07
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.32
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.26
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.48
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.42
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.21
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.19
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.71
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.44
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.25
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.1
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.82
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.82
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.72
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.53
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.22
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.48
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.44
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.42
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.63
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.28
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.11
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.66
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.12
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.41
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	86.0
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.38
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.5
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.12
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.97
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.86
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.79
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	81.46
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	81.21
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.46

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-40  Score=334.91  Aligned_cols=476  Identities=10%  Similarity=-0.001  Sum_probs=376.4

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      .|.+..+...+...    | .++...|+.++..+.+.|++++|+.+|+++...  .|+..++..+..+|...       |
T Consensus        66 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~-------g  131 (597)
T 2xpi_A           66 DGSFLKERNAQNTD----S-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCT-------G  131 (597)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHT-------T
T ss_pred             cCccCCCCCccccc----h-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHc-------C
Confidence            34444454444433    2 357788999999999999999999999999965  67777887777777775       5


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------CCCcccCCChhhHHHHHHH
Q 038914          132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~  202 (570)
                      ++++|+.+|+++...  +++..+++.++.+|.+.|++++|+.+|+++.....         ....+.+.+..+|+.++.+
T Consensus       132 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (597)
T 2xpi_A          132 DYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV  209 (597)
T ss_dssp             CHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH
Confidence            999999999998654  66888999999999999999999999995332210         0000024468899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------------------------------HHHHHhcCCH
Q 038914          203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSL--------------------------------------ICGFCYANDW  244 (570)
Q Consensus       203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~  244 (570)
                      |.+.|++++|+++|+++.+.+.. +...+..+                                      +..|.+.|++
T Consensus       210 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  288 (597)
T 2xpi_A          210 YTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL  288 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence            99999999999999999886422 44444433                                      4455567888


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          245 NEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSM  324 (570)
Q Consensus       245 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  324 (570)
                      ++|.++|+++.+.  +++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+
T Consensus       289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
T 2xpi_A          289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDL  365 (597)
T ss_dssp             HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            8999999888765  4688889999999999999999999999998765 336778888999999999999999999998


Q ss_pred             HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHH
Q 038914          325 ESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTY  404 (570)
Q Consensus       325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  404 (570)
                      .... +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|+.+|+.+.+.+ +.+..
T Consensus       366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  442 (597)
T 2xpi_A          366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL  442 (597)
T ss_dssp             HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred             HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence            8654 4578888889999999999999999999988753 2357788889999999999999999999988764 45778


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCC--hhhHHH
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV----GLMAD--VVTYNI  478 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~  478 (570)
                      ++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.    +..|+  ..+|..
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~  521 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN  521 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence            88889999999999999999999988775 567888999999999999999999999988775    45666  678899


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914          479 MIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL  553 (570)
Q Consensus       479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  553 (570)
                      ++.+|...|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+.+ +.+...+..+..+|
T Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          522 LGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            9999999999999999999988753 4478888999999999999999999999998653 33456666666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-39  Score=326.71  Aligned_cols=452  Identities=12%  Similarity=0.037  Sum_probs=381.5

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038914           87 KTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG  166 (570)
Q Consensus        87 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (570)
                      ..|.+..+...+..+.    .++...+..++..+.+.|       ++++|+.+|+++...  .|+..++..++.+|.+.|
T Consensus        65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g-------~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g  131 (597)
T 2xpi_A           65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQ-------QYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG  131 (597)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT
T ss_pred             ccCccCCCCCccccch----HHHHHHHHHHHHHHHHcc-------CchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC
Confidence            3455555555554433    356777888888887764       999999999999865  567788999999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHH
Q 038914          167 HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE---------------NINPNAVTY  231 (570)
Q Consensus       167 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~  231 (570)
                      ++++|+.+|+++..        .+++..+++.++.+|.+.|++++|+++|+++...               +.+.+..+|
T Consensus       132 ~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (597)
T 2xpi_A          132 DYARAKCLLTKEDL--------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC  203 (597)
T ss_dssp             CHHHHHHHHHHTCG--------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHH
T ss_pred             cHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHH
Confidence            99999999999865        4678999999999999999999999999954322               223458899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH--------------------------------------HHHH
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI--------------------------------------MDEL  273 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~  273 (570)
                      +.++.+|.+.|++++|+.+|+++.+.+.. +...+..+                                      +..|
T Consensus       204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  282 (597)
T 2xpi_A          204 YLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT  282 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999886432 33333322                                      4455


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038914          274 CKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGL  353 (570)
Q Consensus       274 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  353 (570)
                      .+.|++++|.++|+++.+.  +++..++..++.+|.+.|++++|..+|+++...+ +.+..++..++.++.+.|++++|.
T Consensus       283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  359 (597)
T 2xpi_A          283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLY  359 (597)
T ss_dssp             TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred             cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence            6778999999999998865  5789999999999999999999999999999876 447888999999999999999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038914          354 NLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK  433 (570)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  433 (570)
                      .+++++.... +.+..++..++..|.+.|++++|..+|+.+.+.. +.+..++..++.+|.+.|++++|..+|+++.+..
T Consensus       360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999998753 3467889999999999999999999999998754 4568899999999999999999999999998876


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--
Q 038914          434 YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEPN--  507 (570)
Q Consensus       434 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--  507 (570)
                       +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.    +..|+  
T Consensus       438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~  515 (597)
T 2xpi_A          438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW  515 (597)
T ss_dssp             -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred             -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence             6688999999999999999999999999998863 457789999999999999999999999999875    66787  


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          508 FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       508 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      ..+|..++.+|.+.|++++|.++++++.+.+ +.+..++..++.+|.+.|++++|++.|++
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            7899999999999999999999999999765 45789999999999999999999999876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.8e-29  Score=241.26  Aligned_cols=383  Identities=12%  Similarity=0.060  Sum_probs=312.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914          158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG  237 (570)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  237 (570)
                      +...+.+.|++++|++.++.+.+..       +.+...+..+...+...|++++|...++...... +.+..+|..+...
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~   76 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence            4456678899999999998888764       4456777888888888999999999998888763 4577889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038914          238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRA  317 (570)
Q Consensus       238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  317 (570)
                      +...|++++|+..|+++.+.. +.+..++..++.++...|++++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus        77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  154 (388)
T 1w3b_A           77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            999999999999999988753 2245678888889999999999999999988763 23455677788888888999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914          318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN  397 (570)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  397 (570)
                      ...|+++.... +.+..+|..+..++...|++++|+..|+++...+. .+...+..+...+...|++++|...++...+.
T Consensus       155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999888764 44677888899999999999999999999888633 25667888888889999999999999888775


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHH
Q 038914          398 HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYN  477 (570)
Q Consensus       398 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  477 (570)
                      . +.+..++..+..++...|++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+.. +.+..++.
T Consensus       233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  309 (388)
T 1w3b_A          233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN  309 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence            4 4467788888899999999999999999988875 5567788899999999999999999999988863 55678888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038914          478 IMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNE  557 (570)
Q Consensus       478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  557 (570)
                      .++.++...|++++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+.. +.+...+..++.++.+.|
T Consensus       310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence            9999999999999999999999875 24457788889999999999999999999998642 234677777777776655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.7e-29  Score=239.19  Aligned_cols=378  Identities=13%  Similarity=0.048  Sum_probs=328.7

Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914          128 CVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG  207 (570)
Q Consensus       128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  207 (570)
                      ...|++++|+..++++.+.. +.+...+..+...+.+.|++++|...++.+.+.+       +.+..+|..++.++.+.|
T Consensus        10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCC
Confidence            34679999999999998874 3355677778888999999999999999999875       567889999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914          208 FVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLE  287 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  287 (570)
                      ++++|++.|+++.... +.+..+|..++.++...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.|+
T Consensus        82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999999998863 33677899999999999999999999999998642 245667788889999999999999999


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          288 LMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT  367 (570)
Q Consensus       288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  367 (570)
                      ++.+.. +.+..++..+..++...|++++|...|+++...+ +.+...+..+..++...|++++|+..+++...... .+
T Consensus       160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~  236 (388)
T 1w3b_A          160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH  236 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence            999873 3457889999999999999999999999999875 44678899999999999999999999999988632 25


Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914          368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG  447 (570)
Q Consensus       368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  447 (570)
                      ..++..+...+...|++++|...++.+.+.. +.+..++..++.++.+.|++++|...++++.+.. +.+..++..++..
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  314 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence            7788899999999999999999999999875 4567789999999999999999999999999876 7788999999999


Q ss_pred             HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 038914          448 LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNE  523 (570)
Q Consensus       448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  523 (570)
                      +...|++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+.  .| +...|..+...+...|+
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence            999999999999999999852 445688999999999999999999999999984  45 56778888777766553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=1.4e-28  Score=238.02  Aligned_cols=202  Identities=14%  Similarity=0.183  Sum_probs=97.2

Q ss_pred             HHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC---------HHHH
Q 038914          318 RELFVSMESNGCMHDV-VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ---------VEHA  387 (570)
Q Consensus       318 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a  387 (570)
                      ..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|...+.         .+.|
T Consensus        10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A   89 (501)
T 4g26_A           10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG   89 (501)
T ss_dssp             --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence            3334444444333322 23555566666666666666666666666666666666666666554332         3444


Q ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          388 LKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                      .++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus        90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A           90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            44555554444445555555555555555555555555555444444445555555555555555555555555555444


Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914          468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI  519 (570)
Q Consensus       468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  519 (570)
                      |+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|.
T Consensus       170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            4445555555555555555555555555555544444445444444444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.9e-26  Score=224.96  Aligned_cols=438  Identities=11%  Similarity=-0.018  Sum_probs=225.2

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch
Q 038914           75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT  154 (570)
Q Consensus        75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  154 (570)
                      ...+...+..+.+.|++++|+..|++++...  |+...+..+..++...       |++++|+..++++++.+ +.+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~-p~~~~~   75 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV-------GDLKKVVEMSTKALELK-PDYSKV   75 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH-------hhHHHHHHHHHHHhccC-hHHHHH
Confidence            4456666777777777777777777777663  5555555555544443       47777777777776653 224556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038914          155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSL  234 (570)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  234 (570)
                      +..++.++...|++++|+..|+++...+       +++......++..+........+.+.+..+...+..|+...+..-
T Consensus        76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  148 (514)
T 2gw1_A           76 LLRRASANEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA  148 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence            6777777777777777777777777654       233333334444333333233333222222111111111100000


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC---
Q 038914          235 ICGFCYANDWNEAKHLFIEMMDQGV---------QPNVVTFTVIMDELCK---NGKMDGASRLLELMIL-----RGV---  294 (570)
Q Consensus       235 ~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~---  294 (570)
                      ...............+...+.....         +.+...+......+..   .|++++|..+++++.+     ...   
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  228 (514)
T 2gw1_A          149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE  228 (514)
T ss_dssp             --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred             hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence            0000000111111111111111000         1112233333333333   5666666666666555     210   


Q ss_pred             -----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914          295 -----KPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV  369 (570)
Q Consensus       295 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  369 (570)
                           +.+..++..++.++...|++++|...++++......  ...+..+..++...|++++|+..++++..... .+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~  305 (514)
T 2gw1_A          229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSS  305 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTH
T ss_pred             ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHH
Confidence                 112334555555666666666666666666554322  55555666666666666666666666655422 2444


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC  449 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  449 (570)
                      .+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..++.++.
T Consensus       306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~  383 (514)
T 2gw1_A          306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT  383 (514)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence            55556666666666666666666665543 2344555556666666666666666666665543 344555666666666


Q ss_pred             hcCCHHHHHHHHHhhhhCCCCCC-------hhhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914          450 KHGRLEIAWELFSSLPRVGLMAD-------VVTYNIMIHGLCN---DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI  519 (570)
Q Consensus       450 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  519 (570)
                      ..|++++|...++++.+..  |+       ...+..++.++..   .|++++|...++++.+.. +.+..++..+..++.
T Consensus       384 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  460 (514)
T 2gw1_A          384 DKNDFDKALKQYDLAIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL  460 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            6666666666666655421  11       1255666666666   666666666666666532 224555566666666


Q ss_pred             hcCCHHHHHHHHHHHHhC
Q 038914          520 RNNETSKVIELLHRMDMR  537 (570)
Q Consensus       520 ~~g~~~~a~~~~~~~~~~  537 (570)
                      ..|++++|...++++.+.
T Consensus       461 ~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          461 QQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            666666666666666643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=6.6e-28  Score=233.33  Aligned_cols=206  Identities=15%  Similarity=0.192  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC-----
Q 038914          135 EAAALFTKLRVFGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF-----  208 (570)
Q Consensus       135 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----  208 (570)
                      .+..+.+++.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.+      ++||..+|+.||.+|++.+.     
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~   81 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESS   81 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhh
Confidence            344455566655554443 358889999999999999999999999998      89999999999999987665     


Q ss_pred             ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914          209 ----VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR  284 (570)
Q Consensus       209 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  284 (570)
                          +++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus        82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~  161 (501)
T 4g26_A           82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE  161 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence                6889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914          285 LLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKT  346 (570)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  346 (570)
                      +|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..|...
T Consensus       162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999988763

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-26  Score=226.62  Aligned_cols=430  Identities=11%  Similarity=-0.003  Sum_probs=314.2

Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  202 (570)
                      .|..+...|++++|+..|++++..+  |+..++..++.++.+.|++++|+..++++.+.+       +.+..++..++.+
T Consensus        12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~   82 (514)
T 2gw1_A           12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHH
Confidence            3344555679999999999998874  678888888999999999999999999988865       4567788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 038914          203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGA  282 (570)
Q Consensus       203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  282 (570)
                      +...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+................
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999888753 344445555544444433333333333222221112111111111111111122222


Q ss_pred             HHHHHHHHHCCC---------CCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----C--CC------CCCHhhHH
Q 038914          283 SRLLELMILRGV---------KPDTSTYNTLIDGYCL---TGKIDRARELFVSMES-----N--GC------MHDVVSYS  337 (570)
Q Consensus       283 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~  337 (570)
                      ..+...+.....         +.+...+......+..   .|++++|...++++..     .  ..      +.+...+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence            222111111111         1124445555555554   8999999999999887     3  11      22356788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 038914          338 ILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG  417 (570)
Q Consensus       338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  417 (570)
                      .+..++...|++++|...++++.....  +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            889999999999999999999998643  37788889999999999999999999998864 456778889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038914          418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFL  497 (570)
Q Consensus       418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  497 (570)
                      ++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999998876 5677889999999999999999999999998853 3456789999999999999999999999


Q ss_pred             HHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          498 DMEAKGL-EPN----FVIFNTLMLGFIR---NNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       498 ~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      ++.+..- .++    ...+..+..++..   .|++++|...++++.+.. +.+...+..++.++.+.|++++|++.|++
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9987421 111    3488889999999   999999999999999753 44678889999999999999999998875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=4e-25  Score=221.12  Aligned_cols=435  Identities=13%  Similarity=0.087  Sum_probs=297.7

Q ss_pred             HHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHH
Q 038914           39 RERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILI  117 (570)
Q Consensus        39 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l  117 (570)
                      ...+...|......|++++|+..|+.+++.+|  .++.+|..++.++.+.|++++|++.|+++++..  |+ ...+..+.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la  100 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence            35555667777788999999999999999998  789999999999999999999999999999874  43 34444444


Q ss_pred             HHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914          118 NCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT  197 (570)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (570)
                      ..+..       .|++++|+..|+ ....  .|+.  ....+..+...+...+|+..++.+....+.......|+    .
T Consensus       101 ~~~~~-------~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----~  164 (537)
T 3fp2_A          101 SANES-------LGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----N  164 (537)
T ss_dssp             HHHHH-------HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC----H
T ss_pred             HHHHH-------cCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch----H
Confidence            44444       569999999996 4433  2222  22234455566677889999999877532111112222    3


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC------
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAV-TYTSLICGFCY--------ANDWNEAKHLFIEMMDQGVQPN------  262 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------  262 (570)
                      ..+..+....+.+.+...+......  .+... ....+...+..        .|++++|..+++.+.+.... +      
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~  241 (537)
T 3fp2_A          165 TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLREN  241 (537)
T ss_dssp             HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHH
T ss_pred             hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHH
Confidence            3344455566666665555443332  22211 22223222222        24788888888888875322 2      


Q ss_pred             -hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914          263 -VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN  341 (570)
Q Consensus       263 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  341 (570)
                       ..++..+...+...|++++|...++++...  .|+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  318 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQ  318 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHH
Confidence             224666677788888888999888888876  4457777788888888888888888888887764 346777888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038914          342 GYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVK  421 (570)
Q Consensus       342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  421 (570)
                      ++...|++++|+..++++..... .+...+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++
T Consensus       319 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~  396 (537)
T 3fp2_A          319 MYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT  396 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence            88888888888888888887532 245677778888888888888888888887764 4456677778888888888888


Q ss_pred             HHHHHHHHHHcCCC-----CChhhHHHHHHHHHhc----------CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914          422 AVELFRTLRILKYE-----LNIVSYNCLIDGLCKH----------GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND  486 (570)
Q Consensus       422 a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  486 (570)
                      |...++++.+....     .....+..+..++...          |++++|...|+++.+.. +.+..++..++.++...
T Consensus       397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~  475 (537)
T 3fp2_A          397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM  475 (537)
T ss_dssp             HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence            88888887654310     1112234445566666          88888888888887752 33557788888888888


Q ss_pred             CChhHHHHHHHHHHHC
Q 038914          487 GQMDKAHGLFLDMEAK  502 (570)
Q Consensus       487 g~~~~A~~~~~~~~~~  502 (570)
                      |++++|...|+++.+.
T Consensus       476 g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          476 EKIDEAIELFEDSAIL  491 (537)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            8888888888888874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=1.3e-24  Score=217.46  Aligned_cols=401  Identities=12%  Similarity=0.039  Sum_probs=300.9

Q ss_pred             HHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914          118 NCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT  197 (570)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (570)
                      ..+...|..+...|++++|+..|++++... +.+..++..++.++.+.|++++|+..|+++.+.+       +.+..++.
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~   97 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALL   97 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHH
Confidence            444445556666789999999999999875 3467889999999999999999999999999875       55688999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChh-------
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG------VQPNVV-------  264 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~-------  264 (570)
                      .++.++...|++++|++.|+.+ ..  .|+  .....+..+...+....|...++.+....      ..|+..       
T Consensus        98 ~la~~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  172 (537)
T 3fp2_A           98 RRASANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG  172 (537)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence            9999999999999999999643 32  122  12223444555566677888888775531      111111       


Q ss_pred             -----------------------hHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCC-------HhhHHHHHH
Q 038914          265 -----------------------TFTVIMDELCKN--------GKMDGASRLLELMILRGVKPD-------TSTYNTLID  306 (570)
Q Consensus       265 -----------------------~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~  306 (570)
                                             ....+...+...        |++++|..+++++.+... .+       ..++..+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~  251 (537)
T 3fp2_A          173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGI  251 (537)
T ss_dssp             TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHH
Confidence                                   112222222111        378889999998887632 22       224666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHH
Q 038914          307 GYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEH  386 (570)
Q Consensus       307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  386 (570)
                      .+...|++++|...++.+....  |+...+..+..++...|++++|+..++++..... .+..++..+...+...|++++
T Consensus       252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~  328 (537)
T 3fp2_A          252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKN  328 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHH
Confidence            8888999999999999998874  4577888899999999999999999999988632 367788889999999999999


Q ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          387 ALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      |...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus       329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999988764 4456788888999999999999999999998875 56677888999999999999999999999876


Q ss_pred             CCC-----CCChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914          467 VGL-----MADVVTYNIMIHGLCND----------GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL  531 (570)
Q Consensus       467 ~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  531 (570)
                      ...     ......+..+..++...          |++++|...++++.+.. +.+..++..+..++...|++++|...+
T Consensus       407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~  485 (537)
T 3fp2_A          407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF  485 (537)
T ss_dssp             HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence            421     01112244556777777          99999999999998852 346788889999999999999999999


Q ss_pred             HHHHhCC
Q 038914          532 HRMDMRN  538 (570)
Q Consensus       532 ~~~~~~~  538 (570)
                      +++.+..
T Consensus       486 ~~al~~~  492 (537)
T 3fp2_A          486 EDSAILA  492 (537)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=1.2e-23  Score=205.34  Aligned_cols=385  Identities=11%  Similarity=0.026  Sum_probs=231.5

Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038914          137 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELF  216 (570)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  216 (570)
                      ...+.++.... +.+..++..++..+.+.|++++|+.+|+++.+..       +.+..++..++.++...|++++|++.|
T Consensus        12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~   83 (450)
T 2y4t_A           12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDL   83 (450)
T ss_dssp             ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            33444444332 3456778888899999999999999999998764       456888999999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHH------------HHHHHhcCChhH
Q 038914          217 LKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNV---VTFTVI------------MDELCKNGKMDG  281 (570)
Q Consensus       217 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~  281 (570)
                      +++.+.+ +.+..++..++.+|...|++++|...|+++.+.... +.   ..+..+            ...+...|++++
T Consensus        84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  161 (450)
T 2y4t_A           84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA  161 (450)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            9988864 336788888999999999999999999998875322 23   444444            334667777777


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                      |...++++.... +.+..++..++.++...|++++|...|+++.... +.+..++..++.+|...|++++|+..|+++..
T Consensus       162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  239 (450)
T 2y4t_A          162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK  239 (450)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777777653 3355666777777777777777777777766543 34566677777777777777777777777765


Q ss_pred             CCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---
Q 038914          362 KGIRPTV-VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN---  437 (570)
Q Consensus       362 ~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---  437 (570)
                      .  .|+. ..+..+. ..             .         .......++..+...|++++|...|+++.+.. +.+   
T Consensus       240 ~--~p~~~~~~~~~~-~~-------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~  293 (450)
T 2y4t_A          240 L--DQDHKRCFAHYK-QV-------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEY  293 (450)
T ss_dssp             H--CTTCHHHHHHHH-HH-------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHH
T ss_pred             h--CCChHHHHHHHH-HH-------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHH
Confidence            4  2222 2222220 00             0         00011122445555555555555555555432 112   


Q ss_pred             -hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 038914          438 -IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLM  515 (570)
Q Consensus       438 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~  515 (570)
                       ..++..++.++.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++.+.  .| +...+..+.
T Consensus       294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~  370 (450)
T 2y4t_A          294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence             2245555555555566666666555555431 223455555555555566666666666555552  33 233333333


Q ss_pred             H------------HHHhcC-----CHHHHHHHHHHHH-hCC--CCCC-------HHHHHHHHHHHHccCccccc
Q 038914          516 L------------GFIRNN-----ETSKVIELLHRMD-MRN--VMPD-------ASTLSIVVDLLVKNEISLNS  562 (570)
Q Consensus       516 ~------------~~~~~g-----~~~~a~~~~~~~~-~~~--~~p~-------~~~~~~l~~~~~~~g~~~~a  562 (570)
                      .            .|...|     +.+++.+.++++. +..  ..|+       ...+..+..++...|+..+.
T Consensus       371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            1            222333     5566677776632 211  0122       23667777777776665543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=4.3e-23  Score=201.45  Aligned_cols=326  Identities=12%  Similarity=0.044  Sum_probs=228.0

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038914          190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI  269 (570)
Q Consensus       190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  269 (570)
                      +.+...+..++..+.+.|++++|+++|+++.... +.+..++..++.++...|++++|+..++++.+.+. .+..++..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence            4567788888888888888888888888888753 34678888888888888888888888888887643 356777888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914          270 MDELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK  345 (570)
Q Consensus       270 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  345 (570)
                      +.++...|++++|...|+++.+.  .|+.    ..+..++..+..                       ..+..+...+..
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~  155 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFG  155 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence            88888888888888888888875  3332    334333332100                       011222334455


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL  425 (570)
Q Consensus       346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  425 (570)
                      .|++++|+..|+++.... +.+...+..++..+...|++++|..+++.+.+.. +.+..++..++.+|...|++++|...
T Consensus       156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  233 (450)
T 2y4t_A          156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE  233 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555555555432 1244455555555556666666666665555432 33455566666666666666666666


Q ss_pred             HHHHHHcCCCCChhhHHH------------HHHHHHhcCCHHHHHHHHHhhhhCCCCCC-----hhhHHHHHHHHHhcCC
Q 038914          426 FRTLRILKYELNIVSYNC------------LIDGLCKHGRLEIAWELFSSLPRVGLMAD-----VVTYNIMIHGLCNDGQ  488 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~  488 (570)
                      |+++.... +.+...+..            ++.++...|++++|...|+++.+.  .|+     ...+..++.++.+.|+
T Consensus       234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~  310 (450)
T 2y4t_A          234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK  310 (450)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence            66665543 333333333            378899999999999999999884  454     3478889999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038914          489 MDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVV  550 (570)
Q Consensus       489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~  550 (570)
                      +++|+..++++.+.. +.+..+|..++.+|...|++++|...++++.+.  .|+ ...+..+.
T Consensus       311 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~  370 (450)
T 2y4t_A          311 PVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            999999999998852 346889999999999999999999999999964  454 55666666

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.91  E-value=2.3e-19  Score=176.44  Aligned_cols=363  Identities=12%  Similarity=0.012  Sum_probs=270.9

Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh----cCC
Q 038914          137 AALFTKLRVFGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK----KGF  208 (570)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  208 (570)
                      ...+.+..+.|   +..++..+...|..    .+++++|+..|++..+.+         +...+..|...|..    .++
T Consensus        27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~   94 (490)
T 2xm6_A           27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQD   94 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCC
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCC
Confidence            44455554432   56677777777777    788888888888887653         56777778888887    788


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChh
Q 038914          209 VDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK----NGKMD  280 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  280 (570)
                      +++|.+.|++..+.|   +...+..|...|..    .+++++|+.+|++..+.+   +...+..+...|..    .++++
T Consensus        95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~  168 (490)
T 2xm6_A           95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV  168 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            888888888887764   56677777777777    778888888888887764   55667777777776    67888


Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHH
Q 038914          281 GASRLLELMILRGVKPDTSTYNTLIDGYCL----TGKIDRARELFVSMESNGCMHDVVSYSILINGYCK----TKDVEEG  352 (570)
Q Consensus       281 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A  352 (570)
                      +|.+.|++..+.+   +...+..+..+|..    .++.++|..+|++..+.+   +...+..+...|..    .+++++|
T Consensus       169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A  242 (490)
T 2xm6_A          169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS  242 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            8888888887764   56677777777777    788888888888887764   56667777777775    7788888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-----CCHHHHH
Q 038914          353 LNLYRKMLSKGIRPTVVTYHTLFLGLFE----VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN-----GYIVKAV  423 (570)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~  423 (570)
                      ..+|++..+.+   +...+..+...+..    .++.++|..+|+...+.+   +...+..+...|...     +++++|.
T Consensus       243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~  316 (490)
T 2xm6_A          243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI  316 (490)
T ss_dssp             HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence            88888887753   45566666666666    788888888888877654   455666677777776     7888888


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHH
Q 038914          424 ELFRTLRILKYELNIVSYNCLIDGLCKHG---RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAHGLF  496 (570)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~  496 (570)
                      ..+++..+.+   +...+..+...|...|   ++++|...|++..+.   .+...+..+...|..    .+++++|..+|
T Consensus       317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  390 (490)
T 2xm6_A          317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWM  390 (490)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            8888887754   4556677777777656   678888888888775   356677778888877    78888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038914          497 LDMEAKGLEPNFVIFNTLMLGFIR----NNETSKVIELLHRMDMRN  538 (570)
Q Consensus       497 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  538 (570)
                      ++..+.|   +...+..+...|..    .+++++|..++++..+.+
T Consensus       391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            8888754   56677777777777    788888888888888655

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.91  E-value=2.8e-20  Score=175.59  Aligned_cols=330  Identities=11%  Similarity=0.023  Sum_probs=215.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038914          192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMD  271 (570)
Q Consensus       192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  271 (570)
                      ++..+..++..+...|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            45667778888888888888888888887753 3367778888888888888888888888887753 225567777888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 038914          272 ELCKNGKMDGASRLLELMILRGVK--PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV  349 (570)
Q Consensus       272 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  349 (570)
                      ++...|++++|...++++.+....  .+...+..+.....                       ...+..+...+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence            888888888888888888765210  12233333311100                       01122234455666666


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          350 EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTL  429 (570)
Q Consensus       350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  429 (570)
                      ++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+
T Consensus       137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666665542 2244555666666666666666666666666543 445556666666666666666666666666


Q ss_pred             HHcCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHhhhhCCCCCC-h----hhHHHHHHHHHhcCChhHH
Q 038914          430 RILKYELNIVSYN------------CLIDGLCKHGRLEIAWELFSSLPRVGLMAD-V----VTYNIMIHGLCNDGQMDKA  492 (570)
Q Consensus       430 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A  492 (570)
                      .+.. +.+...+.            .++..+...|++++|...++++.+..  |+ .    ..+..++.++...|++++|
T Consensus       215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence            6543 23333222            23556778888888888888887743  33 2    2344577788888888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038914          493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVVDLLV  554 (570)
Q Consensus       493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~  554 (570)
                      ...++++.+.. +.+..++..+..++...|++++|...++++.+.  .|+ ...+..+..+..
T Consensus       292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence            88888888752 336778888888888888888888888888854  344 455555555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=4.2e-20  Score=174.38  Aligned_cols=299  Identities=10%  Similarity=0.019  Sum_probs=189.3

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHH
Q 038914          190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ--PNVVTFT  267 (570)
Q Consensus       190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~  267 (570)
                      +.+..++..+..++...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+....  .+...+.
T Consensus        34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  112 (359)
T 3ieg_A           34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES  112 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence            4457889999999999999999999999999863 337789999999999999999999999999986320  1334444


Q ss_pred             HH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 038914          268 VI------------MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVS  335 (570)
Q Consensus       268 ~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  335 (570)
                      .+            ...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.... +.+...
T Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  190 (359)
T 3ieg_A          113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEA  190 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            44            344445555555555555554432 2234444444555555555555555555544432 223444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914          336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK  415 (570)
Q Consensus       336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  415 (570)
                      +..+..++...|++++|...++++.+.... +...+..+                 ..+.      .......+...+..
T Consensus       191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~-----------------~~~~------~~~~~~~~a~~~~~  246 (359)
T 3ieg_A          191 FYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY-----------------KQVK------KLNKLIESAEELIR  246 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH-----------------HHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH-----------------HHHH------HHHHHHHHHHHHHH
Confidence            444555555555555555555544442110 11111000                 0000      00112233566778


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          416 NGYIVKAVELFRTLRILKYELNI----VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      .|++++|...++++.+.. +.+.    ..+..+..++...|++++|...++++.+.. +.+..++..++.++...|++++
T Consensus       247 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~  324 (359)
T 3ieg_A          247 DGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDE  324 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHH
Confidence            888889988888887764 3333    234457778888999999999999888752 3366788888888999999999


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 038914          492 AHGLFLDMEAKGLEPN-FVIFNTLMLGFI  519 (570)
Q Consensus       492 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~  519 (570)
                      |...|+++.+.  .|+ ...+..+..+..
T Consensus       325 A~~~~~~a~~~--~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          325 AIQDYEAAQEH--NENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence            99999988884  454 555555554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.89  E-value=3.9e-18  Score=167.61  Aligned_cols=368  Identities=14%  Similarity=0.019  Sum_probs=303.4

Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK  205 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  205 (570)
                      .+++++|...|++..+.|   +..++..|...|..    .+++++|+.+|+++.+.+         +...+..|...|..
T Consensus        56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~  123 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHE  123 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHc
Confidence            469999999999998864   56788889999998    899999999999998754         57788889999988


Q ss_pred             ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--
Q 038914          206 ----KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK--  275 (570)
Q Consensus       206 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  275 (570)
                          .+++++|++.|++..+.|   +...+..|...|..    .+++++|+..|++..+.+   +...+..+...|..  
T Consensus       124 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~  197 (490)
T 2xm6_A          124 GNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGL  197 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCC
Confidence                889999999999998875   67788888888887    889999999999999874   67788889999988  


Q ss_pred             --cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 038914          276 --NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL----TGKIDRARELFVSMESNGCMHDVVSYSILINGYCK----  345 (570)
Q Consensus       276 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  345 (570)
                        .+++++|..+|++..+.+   +...+..+..+|..    .+++++|..+|++..+.+   +...+..+..+|..    
T Consensus       198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~  271 (490)
T 2xm6_A          198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAG  271 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTS
T ss_pred             CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCC
Confidence              899999999999999875   56677788888886    889999999999998875   56677788888887    


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhc-----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---
Q 038914          346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEV-----HQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG---  417 (570)
Q Consensus       346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  417 (570)
                      .+++++|+.+|++..+.|   +...+..+...+...     +++++|...++...+.+   +...+..+...|...|   
T Consensus       272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~  345 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE  345 (490)
T ss_dssp             SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence            899999999999998764   566777788888776     89999999999998865   4567777888887766   


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCCh
Q 038914          418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQM  489 (570)
Q Consensus       418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~  489 (570)
                      ++++|..+|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+..+|..    .+++
T Consensus       346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence            7899999999998864   67788889999988    899999999999999864   57788889999988    8999


Q ss_pred             hHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          490 DKAHGLFLDMEAKGLE-P-NFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       490 ~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      ++|...|++..+.+.. | +......+...+.  .+.+.+.+...+..
T Consensus       420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~  465 (490)
T 2xm6_A          420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYI  465 (490)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHH
Confidence            9999999999987532 2 3333344433222  23344444444444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=1.3e-18  Score=172.87  Aligned_cols=433  Identities=12%  Similarity=0.070  Sum_probs=274.6

Q ss_pred             HHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCCHHHHHHH
Q 038914           61 VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESRIMEAAAL  139 (570)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~  139 (570)
                      +|+.+++.+|  .+..+|..++.. .+.|++++|+.+|++++..  .| +...+...+..+.+.       |++++|..+
T Consensus         1 ~le~al~~~P--~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~-------~~~~~a~~~   68 (530)
T 2ooe_A            1 MAEKKLEENP--YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKA-------KNYDKVEKL   68 (530)
T ss_dssp             CHHHHHHHCT--TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT-------TCHHHHHHH
T ss_pred             ChhhHhhhCC--CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhc-------CCHHHHHHH
Confidence            3677888888  899999999984 7899999999999999987  45 445566666666554       599999999


Q ss_pred             HHHHHhcCCCCCcchHHHHHHHH-HhcCChhHHHH----HHHHHHhCCCCCCcccCCChhhHHHHHHHHHh---------
Q 038914          140 FTKLRVFGCEPDVFTYNTLINGL-CRTGHTIVALN----LFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK---------  205 (570)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------  205 (570)
                      |++++..  .|+...|..++... ...|+.+.|.+    +|+.+...-+.    .+++...|...+.....         
T Consensus        69 ~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~----~~~~~~~w~~~~~~~~~~~~~~~~~~  142 (530)
T 2ooe_A           69 FQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM----EIMSYQIWVDYINFLKGVEAVGSYAE  142 (530)
T ss_dssp             HHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT----STTCHHHHHHHHHHHHHSCCCSSTTH
T ss_pred             HHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC----CcccHHHHHHHHHHHhcCCCcccHHH
Confidence            9999987  45777777777533 45688877765    77777653210    12356778887776655         


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038914          206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRL  285 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  285 (570)
                      .|++++|..+|++.+..........|..........|. ..+..++    .                 ...+++..|..+
T Consensus       143 ~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l----~-----------------~~~~~~~~A~~~  200 (530)
T 2ooe_A          143 NQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMI----E-----------------DRSRDYMNARRV  200 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHH----H-----------------TTHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHH----H-----------------HhhHHHHHHHHH
Confidence            68899999999999883111112333322221111110 0000000    0                 012233444444


Q ss_pred             HHHH------HHCC---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914          286 LELM------ILRG---VKPD--------TSTYNTLIDGYCLT----GKI----DRARELFVSMESNGCMHDVVSYSILI  340 (570)
Q Consensus       286 ~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~  340 (570)
                      +...      .+..   ++|+        ...|...+......    ++.    ..+..+|++++... +.+...|..++
T Consensus       201 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~  279 (530)
T 2ooe_A          201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAA  279 (530)
T ss_dssp             HHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            4331      1111   1222        12333333322221    222    35667777766653 34666777777


Q ss_pred             HHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcC-HHH
Q 038914          341 NGYCK-------TKDVE-------EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAAN-TYI  405 (570)
Q Consensus       341 ~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~  405 (570)
                      ..+.+       .|+++       +|..+|++.++.-.+.+...+..++..+...|++++|..+|+.+.+.. +.+ ...
T Consensus       280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  358 (530)
T 2ooe_A          280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLV  358 (530)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHH
T ss_pred             HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHH
Confidence            76664       57766       788888887762122346667777777777888888888888877752 222 246


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914          406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG-LCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC  484 (570)
Q Consensus       406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  484 (570)
                      |..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+..++.. +.+...|..++..+.
T Consensus       359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          359 YIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            7777777777888888888888887653 2233333332222 335788888888888887742 335677888888888


Q ss_pred             hcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          485 NDGQMDKAHGLFLDMEAKG-LEP--NFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       485 ~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ..|+.++|..+|++++..+ ..|  ....|...+......|+.+.+..+.+++.+.
T Consensus       437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8888888888888888752 222  2446777777777788888888888888743

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=9.3e-20  Score=169.82  Aligned_cols=302  Identities=12%  Similarity=0.018  Sum_probs=194.0

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA  228 (570)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  228 (570)
                      +.+...+..++..+...|++++|+.+|+++.+.+       +.+...+..++.++...|++++|..+++++.+.. +.+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~   90 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNP   90 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCH
Confidence            4456667777777777888888888888887764       4455666677777777888888888888777653 3356


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038914          229 VTYTSLICGFCYAN-DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDG  307 (570)
Q Consensus       229 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  307 (570)
                      ..+..+...+...| ++++|...++++..... .+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~  168 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE  168 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence            67777777777777 77777777777776532 245566677777777777777777777776653 2234445556666


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHH
Q 038914          308 YCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHA  387 (570)
Q Consensus       308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  387 (570)
                      +...|++++|...++++.... +.+...+..+..++...|++++|...++++........               +    
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~----  228 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG---------------N----  228 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS---------------C----
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc---------------c----
Confidence            666666666666666666553 33455556666666666666666666665554210000               0    


Q ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          388 LKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                              ....+....++..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus       229 --------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          229 --------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             --------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             --------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence                    00112334566667777777777777777777776654 456667777777777778888888888777764


Q ss_pred             CCCCChhhHHHHHHHH-HhcCChh
Q 038914          468 GLMADVVTYNIMIHGL-CNDGQMD  490 (570)
Q Consensus       468 ~~~~~~~~~~~l~~~~-~~~g~~~  490 (570)
                      . +.+...+..+..++ ...|+.+
T Consensus       300 ~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          300 R-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             C-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             C-CCchHHHHHHHHHHHHHhCchh
Confidence            2 23456666666666 3445443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.3e-19  Score=168.77  Aligned_cols=291  Identities=9%  Similarity=-0.081  Sum_probs=166.8

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914          262 NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN  341 (570)
Q Consensus       262 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  341 (570)
                      +...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|..+++++.... +.+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence            34444555555555555555555555555442 2233444445555555555556655555555543 224455555555


Q ss_pred             HHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914          342 GYCKTK-DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV  420 (570)
Q Consensus       342 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  420 (570)
                      .+...| ++++|+..|+++..... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            555666 56666666666555421 134455555566666666666666666655543 223444555666666666666


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC--------CCCChhhHHHHHHHHHhcCChhHH
Q 038914          421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG--------LMADVVTYNIMIHGLCNDGQMDKA  492 (570)
Q Consensus       421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A  492 (570)
                      +|...++++.+.. +.+..++..++..+...|++++|...++++.+..        .+....++..++.++...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            6666666666554 4455666666666666677777766666665421        022345666777777777777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCcc
Q 038914          493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL-VKNEIS  559 (570)
Q Consensus       493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~  559 (570)
                      ...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.
T Consensus       256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence            77777776642 2345666667777777777777777777776432 23455666666666 344443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=2.1e-18  Score=171.39  Aligned_cols=408  Identities=12%  Similarity=0.059  Sum_probs=270.7

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      .|++++|+.+|+++++..|  .+...|..++..+.+.|++++|+.+|++++..  .|+...+...+......      .|
T Consensus        25 ~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~------~~   94 (530)
T 2ooe_A           25 NQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRET------KG   94 (530)
T ss_dssp             SSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHH------TT
T ss_pred             hCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHH------cc
Confidence            5799999999999999998  88999999999999999999999999999988  46665555554432221      24


Q ss_pred             CHHHHHH----HHHHHHhc-CCCC-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCcccCCChhhH
Q 038914          132 RIMEAAA----LFTKLRVF-GCEP-DVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEIGVVCKPDTVTY  196 (570)
Q Consensus       132 ~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (570)
                      ++++|.+    +|++.+.. |..| +...|...+....+         .|+++.|..+|+++.+..      .......|
T Consensus        95 ~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P------~~~~~~~~  168 (530)
T 2ooe_A           95 KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP------MINIEQLW  168 (530)
T ss_dssp             TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC------CTTHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch------hhhHHHHH
Confidence            5555554    77776653 4443 34577777776654         689999999999998731      11112333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC-----
Q 038914          197 TTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEM------MDQG---VQPN-----  262 (570)
Q Consensus       197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~-----  262 (570)
                      ..........|. ..+..++.                     ...+++..|..++..+      .+..   ++|+     
T Consensus       169 ~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~  226 (530)
T 2ooe_A          169 RDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE  226 (530)
T ss_dssp             HHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred             HHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence            332221111110 00111110                     0123344444444431      1111   1222     


Q ss_pred             ---hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCCHH-------HH
Q 038914          263 ---VVTFTVIMDELCKN----GKM----DGASRLLELMILRGVKPDTSTYNTLIDGYCL-------TGKID-------RA  317 (570)
Q Consensus       263 ---~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a  317 (570)
                         ...|...+......    ++.    ..+..+|++++... +.+...|..++..+..       .|+++       +|
T Consensus       227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A  305 (530)
T 2ooe_A          227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA  305 (530)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence               12344333322221    222    36677788877752 3456677777776664       67776       88


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914          318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT-V-VTYHTLFLGLFEVHQVEHALKLFDEMR  395 (570)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  395 (570)
                      ..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++.  .|+ . ..|...+..+.+.|+++.|..+|+...
T Consensus       306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888888876323456778888888888888888888888888885  333 2 467777777778888888998888887


Q ss_pred             hCCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC-CCCC-
Q 038914          396 RNHVAANTYIYTTFIDG-LCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG-LMAD-  472 (570)
Q Consensus       396 ~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-  472 (570)
                      +.. +.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|+++...+ ..|+ 
T Consensus       384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~  461 (530)
T 2ooe_A          384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK  461 (530)
T ss_dssp             TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred             hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence            753 2233333332222 345889999999999888764 5567888888888889999999999999988753 1222 


Q ss_pred             -hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          473 -VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       473 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                       ...|...+......|+.+.+..+++++.+.
T Consensus       462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          462 SGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             346777788888889999999999888874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=1.8e-19  Score=170.64  Aligned_cols=288  Identities=11%  Similarity=-0.002  Sum_probs=152.8

Q ss_pred             hcCCHHHHHH-HHHHHHHCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914          240 YANDWNEAKH-LFIEMMDQGV---QPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKID  315 (570)
Q Consensus       240 ~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  315 (570)
                      ..|++++|+. .+++......   ..+...+..+...+...|++++|...++++++.. +.+...+..++.++...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            3466677766 6665443311   1124456667777777777777777777777653 335566777777777777777


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---------------HHHHHhh
Q 038914          316 RARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHT---------------LFLGLFE  380 (570)
Q Consensus       316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~  380 (570)
                      +|...++++.... +.+..++..+..++...|++++|+..++++...... +...+..               .+..+..
T Consensus       116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            7777777776654 346667777777777777777777777777765322 1111111               1111224


Q ss_pred             cCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914          381 VHQVEHALKLFDEMRRNHVAA-NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE  459 (570)
Q Consensus       381 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  459 (570)
                      .|++++|...++.+.+..... +..++..+..++...|++++|...++++.... +.+..++..++.++...|++++|..
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555555554432111 34455555555555555555555555555443 3344455555555555555555555


Q ss_pred             HHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHH
Q 038914          460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLE----------PNFVIFNTLMLGFIRNNETSKVIE  529 (570)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~  529 (570)
                      .|+++.+.. +.+..++..++.+|...|++++|...|+++.+..-.          ....+|..+..++...|++++|..
T Consensus       273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            555555431 223344555555555555555555555555442100          013445555555555555555555


Q ss_pred             HHH
Q 038914          530 LLH  532 (570)
Q Consensus       530 ~~~  532 (570)
                      +++
T Consensus       352 ~~~  354 (368)
T 1fch_A          352 ADA  354 (368)
T ss_dssp             HHT
T ss_pred             hHH
Confidence            444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=1.6e-19  Score=171.10  Aligned_cols=312  Identities=13%  Similarity=0.018  Sum_probs=230.1

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHH
Q 038914          240 YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASR-LLELMILRGV---KPDTSTYNTLIDGYCLTGKID  315 (570)
Q Consensus       240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~  315 (570)
                      ..+.|+.+...|+.+...+  |+         ++...|++++|.. .+++......   ..+...+..+...+...|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (368)
T 1fch_A           13 DVDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP   81 (368)
T ss_dssp             --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred             CcccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence            3445555566666665432  11         2334578888888 8876654421   113456888999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914          316 RARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR  395 (570)
Q Consensus       316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  395 (570)
                      +|...++++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus        82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  159 (368)
T 1fch_A           82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL  159 (368)
T ss_dssp             HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999875 4578889999999999999999999999999864 3367889999999999999999999999998


Q ss_pred             hCCCCcCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHH
Q 038914          396 RNHVAANTYIYTT---------------FIDGLCKNGYIVKAVELFRTLRILKYEL--NIVSYNCLIDGLCKHGRLEIAW  458 (570)
Q Consensus       396 ~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  458 (570)
                      +.... +...+..               .+..+...|++++|...++++.+.. +.  +..++..++.++...|++++|.
T Consensus       160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~  237 (368)
T 1fch_A          160 RYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAV  237 (368)
T ss_dssp             HTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            86422 2222211               1333348899999999999998875 33  5788999999999999999999


Q ss_pred             HHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914          459 ELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRN  538 (570)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  538 (570)
                      ..++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....
T Consensus       238 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  315 (368)
T 1fch_A          238 DCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  315 (368)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999998853 4456889999999999999999999999998852 3467889999999999999999999999998532


Q ss_pred             CC----------CCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          539 VM----------PDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       539 ~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      -.          ....++..++.++...|+.++|...+++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            11          1268999999999999999999888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=2.2e-16  Score=162.19  Aligned_cols=413  Identities=11%  Similarity=0.106  Sum_probs=261.4

Q ss_pred             CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914           72 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL-FPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE  149 (570)
Q Consensus        72 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (570)
                      ..++.--...+.+|...|.+.+|+++|+++.-.+- ..+. ..-..++.+..+.        +..+.....+++..    
T Consensus       982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--------D~~Rv~eyI~kLd~---- 1049 (1630)
T 1xi4_A          982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--------DRTRVMEYINRLDN---- 1049 (1630)
T ss_pred             ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--------ChhhHHHHHHHhhh----
Confidence            34445555677778888888888888888884311 0111 2222233333332        33333333333321    


Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAV  229 (570)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  229 (570)
                         .....+...+...|.+++|..+|++...           .....+.++.   ..|++++|.++.++..      +..
T Consensus      1050 ---~d~~eIA~Iai~lglyEEAf~IYkKa~~-----------~~~A~~VLie---~i~nldrAiE~Aervn------~p~ 1106 (1630)
T 1xi4_A         1050 ---YDAPDIANIAISNELFEEAFAIFRKFDV-----------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPA 1106 (1630)
T ss_pred             ---ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHH
Confidence               1133466777778888888888888531           1222233322   6677888888877552      466


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038914          230 TYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYC  309 (570)
Q Consensus       230 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  309 (570)
                      +|..+..++...|++++|++.|.+.      -|...|..++.++.+.|++++|.+++....+..  ++......++.+|+
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence            7788888888888888888888553      256677778888888888888888888777653  33333445777788


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038914          310 LTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALK  389 (570)
Q Consensus       310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  389 (570)
                      +.+++++....    .+   .++...+..+...|...|++++|..+|..+         ..|..++..+.+.|+++.|.+
T Consensus      1179 Kl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1179 KTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             hhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence            88777753333    22   235556667888888888888888888764         367778888888888888888


Q ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914          390 LFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL  469 (570)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  469 (570)
                      .++..      .+..+|..+..+|...|++..|......+     ..+...+..++..|.+.|.+++|+.+++..+... 
T Consensus      1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le- 1310 (1630)
T 1xi4_A         1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE- 1310 (1630)
T ss_pred             HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-
Confidence            88765      35577777777888888888877766542     3455666677888888888888888887776643 


Q ss_pred             CCChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 038914          470 MADVVTYNIMIHGLCND--GQMDKAHGLFLDMEAKGLEP------NFVIFNTLMLGFIRNNETSKVIELLHRMDMR----  537 (570)
Q Consensus       470 ~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----  537 (570)
                      +-....|..+...+++.  ++..++.++|..-..  ++|      +...|..++..|.+.|+++.|...+-+-...    
T Consensus      1311 raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A         1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred             hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence            22334566666666553  345555555543322  222      3556777788888888888877322111100    


Q ss_pred             -------CCCCCHHHHHHHHHHHHccC
Q 038914          538 -------NVMPDASTLSIVVDLLVKNE  557 (570)
Q Consensus       538 -------~~~p~~~~~~~l~~~~~~~g  557 (570)
                             .-..+.+.+...+..|...+
T Consensus      1389 ~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1389 GQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHhhC
Confidence                   11345666666666666555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=8.1e-16  Score=158.11  Aligned_cols=406  Identities=14%  Similarity=0.181  Sum_probs=294.8

Q ss_pred             CCCChhHHHHHHHHHHhcCCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           51 TTITPNDALCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      ..|.+.+|+.++++++ ..|+  ..+...-+.++.+..+. +..+..++..+.-..    +   ...+-..+..      
T Consensus       997 ~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~------ 1061 (1630)
T 1xi4_A          997 TADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAIS------ 1061 (1630)
T ss_pred             hCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHh------
Confidence            5789999999999998 3342  24556666677766666 445555555555422    1   1222333333      


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 038914          129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGF  208 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  208 (570)
                       .|.+++|..+|++..     ....+.+.++   ...+++++|.++.++..            +..+|..+..++...|+
T Consensus      1062 -lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1062 -NELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             -CCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCC
Confidence             469999999999852     1222223333   26788999999988652            36789999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914          209 VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLEL  288 (570)
Q Consensus       209 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  288 (570)
                      +++|++.|.+.      .|...|..++.++.+.|++++|.+.|....+..  ++....+.++.+|++.+++++...+.  
T Consensus      1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A         1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred             HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence            99999999664      277888899999999999999999999887754  34334446888999998888644432  


Q ss_pred             HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 038914          289 MILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTV  368 (570)
Q Consensus       289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  368 (570)
                        +   .++...+..+...|...|++++|..+|..+         ..|..+..++.+.|++++|++.+++..      +.
T Consensus      1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A         1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred             --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence              2   345566777999999999999999999885         368899999999999999999998772      66


Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038914          369 VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGL  448 (570)
Q Consensus       369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  448 (570)
                      .+|..+..+|...|++..|......+     ..+...+..++..|.+.|.+++|+.+++...... +-....|+.+...|
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence            88888899999999999988876543     3456677788999999999999999998887665 45566777777676


Q ss_pred             Hhc--CCHHHHHHHHHhhhhCCCCC------ChhhHHHHHHHHHhcCChhHHHHHH-------------HHHHHCCCCCC
Q 038914          449 CKH--GRLEIAWELFSSLPRVGLMA------DVVTYNIMIHGLCNDGQMDKAHGLF-------------LDMEAKGLEPN  507 (570)
Q Consensus       449 ~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~  507 (570)
                      .+.  ++..++.+.|..-..  +++      +...|..++..|.+.|+++.|....             ...+.  -..|
T Consensus      1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A         1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred             HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence            654  456666666665443  333      4567888999999999999988332             12111  1335


Q ss_pred             HHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 038914          508 FVIFNTLMLGFIRNN---------------ETSKVIELLH  532 (570)
Q Consensus       508 ~~~~~~l~~~~~~~g---------------~~~~a~~~~~  532 (570)
                      ...|...+..|...+               +++.+.+++.
T Consensus      1401 ~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1401 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            666666666666655               6666666665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=2e-19  Score=170.01  Aligned_cols=266  Identities=12%  Similarity=0.030  Sum_probs=196.8

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914          262 NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILIN  341 (570)
Q Consensus       262 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  341 (570)
                      +...+..++..+.+.|++++|..+|+++++.. +.+..++..++.++...|++++|...|+++.... +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            34457777788888888888888888887763 3466778888888888888888888888887764 346777888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCC---------CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHH
Q 038914          342 GYCKTKDVEEGLNLYRKMLSKGIR---------PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVA-ANTYIYTTFID  411 (570)
Q Consensus       342 ~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~  411 (570)
                      +|...|++++|+..++++.+....         .....+..+...+...|++++|..+++.+.+.... .+..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            888888888888888888764211         01122334467778888889999888888876422 15778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      .+...|++++|...++++.+.. +.+..+|..++.+|...|++++|...|+++.+.. +.+..++..++.+|...|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            8888899999999998888775 5677888888888999999999999999888752 3346788888888999999999


Q ss_pred             HHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          492 AHGLFLDMEAKGLEP-------------NFVIFNTLMLGFIRNNETSKVIELLHR  533 (570)
Q Consensus       492 A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  533 (570)
                      |...|+++.+.  .|             +..+|..+..++...|+.+.+..+.++
T Consensus       300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999888763  12             256788888888888888888777655

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.8e-17  Score=162.53  Aligned_cols=392  Identities=10%  Similarity=-0.075  Sum_probs=242.8

Q ss_pred             HhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCC-HhhHHHHHHHHHhcCCcchhhCCHHHHH
Q 038914           66 LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST-----G--LFPD-LYAYNILINCFLQNGSSLCVESRIMEAA  137 (570)
Q Consensus        66 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~A~  137 (570)
                      ++..+.......|+.++.++...|++++|++.|+++++.     +  ..|+ ..++..+-..       +...|++++|.
T Consensus        42 ~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~-------y~~~g~~~~A~  114 (472)
T 4g1t_A           42 TEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV-------YYHMGRLSDVQ  114 (472)
T ss_dssp             TTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH-------HHHTTCHHHHH
T ss_pred             HHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH-------HHHcCChHHHH
Confidence            334443455678999999999999999999999998753     0  1222 2334444444       44457999999


Q ss_pred             HHHHHHHhcC------CCC-CcchHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH---HHh
Q 038914          138 ALFTKLRVFG------CEP-DVFTYNTLINGLCRT--GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG---LCK  205 (570)
Q Consensus       138 ~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~  205 (570)
                      ..++++....      ..+ ...++..+..++...  +++++|+..|+++.+.+       +.+...+..+..+   +..
T Consensus       115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~~~~~~~~~~~~l~~  187 (472)
T 4g1t_A          115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-------PKNPEFTSGLAIASYRLDN  187 (472)
T ss_dssp             HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcC
Confidence            9999887531      111 234566666555554  57999999999999865       3345566555554   445


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                      .++.++|++.+++..+.+ +.+..++..+...+..    .+++++|...+++..... +.+..++..+...+...|++++
T Consensus       188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~  265 (472)
T 4g1t_A          188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK  265 (472)
T ss_dssp             SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence            688899999999988764 3356666666655544    467889999999988764 3467788889999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                      |...++++.+.. +.+..++..+..+|...+...         ....       ...........+.++.|...+++...
T Consensus       266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~  328 (472)
T 4g1t_A          266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADE  328 (472)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            999999998863 335566666666553321111         0000       00001111122345677888887776


Q ss_pred             CCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 038914          362 KGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTY--IYTTFID-GLCKNGYIVKAVELFRTLRILKYELNI  438 (570)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~  438 (570)
                      ... .+..++..+...+...|++++|+..|++..+....+...  .+..+.. .....|++++|+..|++..+..  |+.
T Consensus       329 ~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~  405 (472)
T 4g1t_A          329 AND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKS  405 (472)
T ss_dssp             HCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCC
T ss_pred             cCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccc
Confidence            532 245667778888888888888888888887754333221  2222222 2346788889999888888764  433


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 038914          439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG  503 (570)
Q Consensus       439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  503 (570)
                      .....         ....+.++++.....+ +.+..+|..++.+|...|++++|++.|+++++.+
T Consensus       406 ~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          406 REKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            22221         2234455566655542 4466788899999999999999999999988753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=9.9e-17  Score=157.33  Aligned_cols=360  Identities=12%  Similarity=-0.030  Sum_probs=236.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 038914          192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDE--------NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ-----G  258 (570)
Q Consensus       192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~  258 (570)
                      ....|+.|..++...|++++|++.|++..+.        ..+....+|..+..+|...|++++|...++++.+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3567888888888888888888888876542        12224567888888888888888888888877642     1


Q ss_pred             -C-CCChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 038914          259 -V-QPNVVTFTVIMDELCKN--GKMDGASRLLELMILRGVKPDTSTYNTLIDG---YCLTGKIDRARELFVSMESNGCMH  331 (570)
Q Consensus       259 -~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~  331 (570)
                       . .....++.....++...  +++++|+..|+++++.. +.+...+..+..+   +...++.++|++.+++..+.. +.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence             0 11234555555555443  46888888888888763 2234444444443   344567778888888877764 33


Q ss_pred             CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 038914          332 DVVSYSILINGYCK----TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYT  407 (570)
Q Consensus       332 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  407 (570)
                      +...+..+...+..    .+++++|.+++++..... +.+...+..+...+...|++++|...++...+.. +.+..++.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence            55556555544443    456778888888877753 2356677888888888888888888888887754 34555666


Q ss_pred             HHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914          408 TFIDGLCKN-------------------GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG  468 (570)
Q Consensus       408 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  468 (570)
                      .+..+|...                   +.++.|...++.+.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus       286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            665554321                   34567888888887766 5677788899999999999999999999998754


Q ss_pred             CCCCh--hhHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          469 LMADV--VTYNIMIH-GLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAST  545 (570)
Q Consensus       469 ~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  545 (570)
                      ..+..  ..+..++. .....|++++|+..|+++++  +.|+.......         .+.+.+++++.+..+ +.+..+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~  432 (472)
T 4g1t_A          365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEA  432 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTH
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHH
Confidence            33222  12333333 23467899999999999988  45654332222         234455666666543 456788


Q ss_pred             HHHHHHHHHccCcccccchhhhh
Q 038914          546 LSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       546 ~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      +..++.++...|++++|++.|++
T Consensus       433 ~~~LG~~~~~~g~~~~A~~~y~k  455 (472)
T 4g1t_A          433 LHVLAFLQELNEKMQQADEDSER  455 (472)
T ss_dssp             HHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            89999999999999999998876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=3e-18  Score=161.97  Aligned_cols=275  Identities=11%  Similarity=-0.052  Sum_probs=180.1

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038914          193 TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDE  272 (570)
Q Consensus       193 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  272 (570)
                      ...+..++..+.+.|++++|++.|+++.... +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..++.+
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3446677777777777777777777776653 3356667777777777777777777777766643 2245566666666


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038914          273 LCKNGKMDGASRLLELMILRGVKPDT-STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEE  351 (570)
Q Consensus       273 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  351 (570)
                      +...|++++|...++++.+..  |+. ..+..+.                         .....+..+..++...|++++
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~  195 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG  195 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence            666777777777666666542  111 1111110                         012233445666777777777


Q ss_pred             HHHHHHHHHhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          352 GLNLYRKMLSKGIR-PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR  430 (570)
Q Consensus       352 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  430 (570)
                      |+..++++...... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus       196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777777765322 146677777777777888888888887777653 4467778888888888888888888888888


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC-----------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914          431 ILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLM-----------ADVVTYNIMIHGLCNDGQMDKAHGLFLD  498 (570)
Q Consensus       431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~  498 (570)
                      +.. +.+..++..+..+|...|++++|...|+++.+....           .+...|..+..++...|+.+.+..+..+
T Consensus       275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            765 556778888888888889999988888888763100           1256788899999999999888877654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=1.4e-17  Score=153.31  Aligned_cols=282  Identities=11%  Similarity=0.063  Sum_probs=112.6

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE  130 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  130 (570)
                      +.|++++|.++++++       +++.+|..++.++.+.|++++|++.|.++      +|...+..++..+...       
T Consensus        15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~-------   74 (449)
T 1b89_A           15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS-------   74 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC-------
Confidence            456788999999888       23358999999999999999999999653      4555677777766554       


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD  210 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  210 (570)
                      |++++|+..++...+.  .+++.+.+.++.+|.+.|+++++.++++             .|+..+|..++..|...|+++
T Consensus        75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~ye  139 (449)
T 1b89_A           75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYD  139 (449)
T ss_dssp             ------------------------------------CHHHHTTTTT-------------CC----------------CTT
T ss_pred             CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHH
Confidence            5888888877766654  4456778888888888888888777663             255668888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          211 KAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMI  290 (570)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  290 (570)
                      +|...|..+         ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+ 
T Consensus       140 eA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-  203 (449)
T 1b89_A          140 AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-  203 (449)
T ss_dssp             THHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-
T ss_pred             HHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-
Confidence            888888866         35888888888888888888888877      26778888888888888888885544432 


Q ss_pred             HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---
Q 038914          291 LRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIRP---  366 (570)
Q Consensus       291 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---  366 (570)
                          ...+.....++..|.+.|.+++|..+++..+... +.....|+.+.-+|++- .+++..+.++...+. +++|   
T Consensus       204 ----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~  277 (449)
T 1b89_A          204 ----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLR  277 (449)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHH
T ss_pred             ----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHH
Confidence                2233334467777888888888888888877654 34556666666666553 333333333322221 1111   


Q ss_pred             ---ChhhHHHHHHHHhhcCCHHHHHH
Q 038914          367 ---TVVTYHTLFLGLFEVHQVEHALK  389 (570)
Q Consensus       367 ---~~~~~~~l~~~~~~~~~~~~a~~  389 (570)
                         +...|..+...|.+.++++.|..
T Consensus       278 ~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          278 AAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHH
Confidence               23445555556666666665554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=8.2e-18  Score=156.38  Aligned_cols=262  Identities=11%  Similarity=-0.057  Sum_probs=169.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914          266 FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK  345 (570)
Q Consensus       266 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  345 (570)
                      +..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++++.... +.+...+..+..++..
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence            3444445555555555555555554432 2234444455555555555555555555554442 2244455555555555


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 038914          346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTL--------------FL-GLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI  410 (570)
Q Consensus       346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  410 (570)
                      .|++++|+..++++...... +...+..+              .. .+...|++++|...++.+.+.. +.+...+..+.
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  179 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG  179 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            55555555555555553211 11111111              22 3667788888888888877654 44677788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChh
Q 038914          411 DGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMD  490 (570)
Q Consensus       411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  490 (570)
                      ..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++.++...|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence            88888888888888888887765 5567778888888888888888888888887753 335677888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          491 KAHGLFLDMEAKGLEPN-------------FVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       491 ~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      +|...++++.+.  .|+             ..+|..+..++...|++++|..++++.+
T Consensus       258 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          258 LAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            888888888764  233             5677888888888888888888876543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=1e-18  Score=160.73  Aligned_cols=284  Identities=12%  Similarity=0.069  Sum_probs=136.5

Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                      .|++++|.+.++++.      +..+|..++.++.+.|++++|++.|.+.            +|..+|..++..+...|++
T Consensus        16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g~~   77 (449)
T 1b89_A           16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNW   77 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCCCH
Confidence            468999999999982      3359999999999999999999999653            4677999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      ++|+..++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..++..|...|.+++|..+|..+
T Consensus        78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a  148 (449)
T 1b89_A           78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV  148 (449)
T ss_dssp             ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred             HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            9999988877764  4467889999999999999999988874       367779999999999999999999999976


Q ss_pred             HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038914          290 ILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVV  369 (570)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  369 (570)
                               ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.     ..+.
T Consensus       149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad  208 (449)
T 1b89_A          149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD  208 (449)
T ss_dssp             ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred             ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence                     47899999999999999999999988      278999999999999999999966555432     3444


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCC------ChhhHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR-ILKYEL------NIVSYN  442 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~  442 (570)
                      ....++..|.+.|++++++.+++...... +-....|+.+..+|++- ++++..+.++... +.++++      +...|.
T Consensus       209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~  286 (449)
T 1b89_A          209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA  286 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            46678899999999999999999998765 55667788777777664 3444444443322 122222      466788


Q ss_pred             HHHHHHHhcCCHHHHHHHHH
Q 038914          443 CLIDGLCKHGRLEIAWELFS  462 (570)
Q Consensus       443 ~l~~~~~~~g~~~~A~~~~~  462 (570)
                      .+...|...++++.|....-
T Consensus       287 e~~~ly~~~~e~d~A~~tm~  306 (449)
T 1b89_A          287 ELVFLYDKYEEYDNAIITMM  306 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhhchHHHHHHHHH
Confidence            99999999999998877543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=1e-17  Score=155.68  Aligned_cols=266  Identities=8%  Similarity=-0.071  Sum_probs=221.5

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038914          297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL  376 (570)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  376 (570)
                      +...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            34566778889999999999999999998865 4477889999999999999999999999999863 336778889999


Q ss_pred             HHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 038914          377 GLFEVHQVEHALKLFDEMRRNHVAANTYIYTTF--------------ID-GLCKNGYIVKAVELFRTLRILKYELNIVSY  441 (570)
Q Consensus       377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  441 (570)
                      .+...|++++|...++.+.+.. +.+...+..+              .. .+...|++++|...++++.+.. +.+..++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  175 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH  175 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence            9999999999999999998764 2223333332              22 3677889999999999998876 5678899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN  521 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  521 (570)
                      ..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..+..++...
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998853 4456889999999999999999999999998852 34678899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHccCcccccchhhhh
Q 038914          522 NETSKVIELLHRMDMRNVMP-----------DASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       522 g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      |++++|...++++.+..-..           +...+..+..++.+.|+.++|...+++
T Consensus       254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999998643111           467889999999999999999888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=2.1e-17  Score=149.49  Aligned_cols=219  Identities=9%  Similarity=0.055  Sum_probs=99.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC
Q 038914          269 IMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGC-MHDVVSYSILINGYCKTK  347 (570)
Q Consensus       269 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  347 (570)
                      +.++|...|+++.|+..++.    .-+|+..++..+...+...++.++|++.++++...+. +.+...+..+..++...|
T Consensus        40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g  115 (291)
T 3mkr_A           40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ  115 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence            34444444444444443322    1123333444444444444444555555444444331 223333444444444555


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHH---HHHHHHHHHhcCCHHHHHH
Q 038914          348 DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYI---YTTFIDGLCKNGYIVKAVE  424 (570)
Q Consensus       348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~  424 (570)
                      ++++|++.+++      +.+...+..++..+.+.|++++|...++.+.+..  |+...   ....+..+...|++++|..
T Consensus       116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~  187 (291)
T 3mkr_A          116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY  187 (291)
T ss_dssp             CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence            55555544443      1233444444444445555555555554444432  22110   0111122223355555555


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHH
Q 038914          425 LFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK-AHGLFLDMEA  501 (570)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~  501 (570)
                      +|+++.+.. +.+...++.++.++...|++++|...|+++++.. +.+..++..++.++...|+.++ +.++++++.+
T Consensus       188 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          188 IFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            555555543 4455555555555555555555555555555532 2234455555555555555543 3455555554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=8.5e-17  Score=145.47  Aligned_cols=258  Identities=10%  Similarity=0.034  Sum_probs=209.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038914          200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKM  279 (570)
Q Consensus       200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  279 (570)
                      +.-....|++..|+..++................+..+|...|+++.|+..++.    ..+|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence            345667899999999998876542211134556778999999999999987654    2355677888889999999999


Q ss_pred             hHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          280 DGASRLLELMILRGVKP-DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRK  358 (570)
Q Consensus       280 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  358 (570)
                      ++|++.++++...+..| +...+..+..++...|++++|++.+++      +.+...+..++.++.+.|++++|.+.|++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999876444 556677778999999999999999987      45788999999999999999999999999


Q ss_pred             HHhCCCCCChhhHHHH----HHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038914          359 MLSKGIRPTVVTYHTL----FLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKY  434 (570)
Q Consensus       359 ~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  434 (570)
                      +.+..  |+.. ...+    +..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. 
T Consensus       156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-  230 (291)
T 3mkr_A          156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-  230 (291)
T ss_dssp             HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            99863  4432 2222    233445689999999999999874 6788899999999999999999999999999886 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHH-HHHHHHhhhhCCCCCChh
Q 038914          435 ELNIVSYNCLIDGLCKHGRLEI-AWELFSSLPRVGLMADVV  474 (570)
Q Consensus       435 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~  474 (570)
                      +.+..++..++..+...|+.++ +.++++++.+.  .|+..
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~  269 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP  269 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence            6788899999999999999876 67899999884  56543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=2.1e-16  Score=152.63  Aligned_cols=314  Identities=11%  Similarity=0.005  Sum_probs=149.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH---HHHHHHHHHHHhcCCCCCcchH
Q 038914           79 NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI---MEAAALFTKLRVFGCEPDVFTY  155 (570)
Q Consensus        79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~  155 (570)
                      ..++..+.+.|++++|+++|+++.+.| .++         ++..+|..+...|+.   ++|..+|++..+.    ++.++
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~---------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~   72 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG-YSE---------AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQ   72 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCT---------GGGTCC--------------------------------CH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHH---------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHH
Confidence            346667777888888888888887665 222         223334444445566   7888888877643    55566


Q ss_pred             HHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC
Q 038914          156 NTLINGLCRTG-----HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK---AKELFLKMKDENINPN  227 (570)
Q Consensus       156 ~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~  227 (570)
                      ..|...+...+     ++++|+..|++..+.+         +...+..|...|...+..++   +.+.+......|   +
T Consensus        73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~  140 (452)
T 3e4b_A           73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANG---------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---Y  140 (452)
T ss_dssp             HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---C
T ss_pred             HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---C
Confidence            66666555544     6677888888877754         23366667777766554333   333344333333   3


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 038914          228 AVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG---KMDGASRLLELMILRGVKPDTSTYNTL  304 (570)
Q Consensus       228 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l  304 (570)
                      ...+..|...|...+.++++......+.+.-...++..+..+...|...|   +.++|+..|++..+.| .++...+..+
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L  219 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV  219 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence            44555566666666644444433222222111223335566666666666   6666666666666654 2333333445


Q ss_pred             HHHHHhc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038914          305 IDGYCLT----GKIDRARELFVSMESNGCMHDVVSYSILING-Y--CKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLG  377 (570)
Q Consensus       305 ~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  377 (570)
                      ..+|...    +++++|..+|++.. .|   +...+..+..+ +  ...+++++|+.+|++..+.|   +......+...
T Consensus       220 g~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~  292 (452)
T 3e4b_A          220 ARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL  292 (452)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            5555433    45666666666655 22   44444444444 2  34555566666666555543   33444444444


Q ss_pred             HhhcC-----CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 038914          378 LFEVH-----QVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----NGYIVKAVELFRTLRI  431 (570)
Q Consensus       378 ~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~  431 (570)
                      |. .|     ++++|..+|+...    +.+......+...|..    ..++++|..+|++..+
T Consensus       293 y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          293 YY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            43 23     5555555554443    1233333334433333    1244444444444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=9.4e-17  Score=155.11  Aligned_cols=343  Identities=13%  Similarity=0.043  Sum_probs=223.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHH
Q 038914          157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV---DKAKELFLKMKDENINPNAVTYTS  233 (570)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~  233 (570)
                      .+...+.+.|++++|+++|+++.+.+         +...+..|...|...|+.   ++|++.|++..+.    ++..+..
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g---------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~   74 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELG---------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQAR   74 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT---------CCTGGGTCC--------------------------------CHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHH
Confidence            35666778899999999999987754         445566677777777877   8999999888764    5556666


Q ss_pred             HHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHhhHHHHH
Q 038914          234 LICGFCYAN-----DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG---ASRLLELMILRGVKPDTSTYNTLI  305 (570)
Q Consensus       234 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~  305 (570)
                      |...+...+     ++++|+.+|++..+.|.   ...+..+...|...+..++   +.+.+......|   +......+.
T Consensus        75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg  148 (452)
T 3e4b_A           75 LGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV  148 (452)
T ss_dssp             HHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred             HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            766555554     77889999998888653   3367777777777665443   445555554444   345566677


Q ss_pred             HHHHhcCCHHHHH----HHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038914          306 DGYCLTGKIDRAR----ELFVSMESNGCMHDVVSYSILINGYCKTK---DVEEGLNLYRKMLSKGIRPTVVTYHTLFLGL  378 (570)
Q Consensus       306 ~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  378 (570)
                      ..|...+.++++.    .+++.....    ++..+..+..+|...|   +.++|+..|++..+.|.. +...+..+...|
T Consensus       149 ~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y  223 (452)
T 3e4b_A          149 LLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL  223 (452)
T ss_dssp             HHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence            7777777544444    344433332    4447888888888888   888999999998887643 455446666666


Q ss_pred             hhc----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914          379 FEV----HQVEHALKLFDEMRRNHVAANTYIYTTFIDG-L--CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH  451 (570)
Q Consensus       379 ~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  451 (570)
                      ...    +++++|..+|+...    +.+...+..+... +  ...+++++|...|++..+.+   +...+..+...|. .
T Consensus       224 ~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~  295 (452)
T 3e4b_A          224 GDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E  295 (452)
T ss_dssp             TCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred             hCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence            554    78899999998876    3355566666665 3  45789999999999888765   6667777777776 5


Q ss_pred             C-----CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 038914          452 G-----RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR--  520 (570)
Q Consensus       452 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--  520 (570)
                      |     ++++|...|++.. .   .+...+..|...|..    ..++++|..+|++..+.|   +......+...|..  
T Consensus       296 G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~  368 (452)
T 3e4b_A          296 GKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGK  368 (452)
T ss_dssp             CSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCT
T ss_pred             CCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCC
Confidence            5     8999999999887 3   356677777777766    348899999999988865   33445556666653  


Q ss_pred             --cCCHHHHHHHHHHHHhCC
Q 038914          521 --NNETSKVIELLHRMDMRN  538 (570)
Q Consensus       521 --~g~~~~a~~~~~~~~~~~  538 (570)
                        ..+.++|..++++..+.|
T Consensus       369 g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          369 GTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             TBCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHCC
Confidence              458889999999988776

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=9.4e-17  Score=150.00  Aligned_cols=251  Identities=9%  Similarity=0.025  Sum_probs=184.0

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhCC-HHHHHHHHHHHHhcCCCC
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVESR-IMEAAALFTKLRVFGCEP  150 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~  150 (570)
                      .+..+|..++.++...|++++|++.|++++..  .|+ ...+..+-..+...       |+ +++|+..|++++... +.
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~-------g~d~~eAl~~~~~al~l~-P~  164 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSL-------QKDLHEEMNYITAIIEEQ-PK  164 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHC-TT
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHc-------ccCHHHHHHHHHHHHHHC-CC
Confidence            56677888888888888888888888888877  454 34445555555554       45 888888888888874 23


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      +..+|+.+..++...|++++|+..|+++++.+       +.+..+|..+..++...|++++|++.|+++++.+.. +...
T Consensus       165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a  236 (382)
T 2h6f_A          165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV  236 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH
Confidence            66778888888888888888888888888875       456788888888888888888888888888887755 7788


Q ss_pred             HHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHhhHH
Q 038914          231 YTSLICGFCY-ANDWNEA-----KHLFIEMMDQGVQPNVVTFTVIMDELCKNG--KMDGASRLLELMILRGVKPDTSTYN  302 (570)
Q Consensus       231 ~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~  302 (570)
                      |+.+..++.. .|..++|     +..+++.+..... +...|..+..++...|  ++++|...+.++ +. .+.+...+.
T Consensus       237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~  313 (382)
T 2h6f_A          237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIA  313 (382)
T ss_dssp             HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHH
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHH
Confidence            8888888888 5554666     4778887775322 5667777777777777  578888888877 33 244566777


Q ss_pred             HHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCHhhHHHHHHHHHh
Q 038914          303 TLIDGYCLTG---------KIDRARELFVSM-ESNGCMHDVVSYSILINGYCK  345 (570)
Q Consensus       303 ~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~  345 (570)
                      .++.+|...|         ..++|..+++++ .+.+ +.....|..+...+..
T Consensus       314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence            7888887763         257888888888 5553 2344556666655543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.75  E-value=3.2e-16  Score=146.39  Aligned_cols=216  Identities=11%  Similarity=0.033  Sum_probs=124.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                      |++++|+..|++++... +.+..+|+.+..++...|+ +++|+..|+++...+       +.+...|..+..++...|++
T Consensus       111 g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------P~~~~a~~~~g~~~~~~g~~  182 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQVWHHRRVLVEWLRDP  182 (382)
T ss_dssp             CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCC
T ss_pred             CChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHccCH
Confidence            46666666666666553 2244556666666666664 666666666666654       33455666666666666666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChhHH-----H
Q 038914          210 DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK-NGKMDGA-----S  283 (570)
Q Consensus       210 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~  283 (570)
                      ++|+..|++++..+. -+..+|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..++|     +
T Consensus       183 ~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el  260 (382)
T 2h6f_A          183 SQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREV  260 (382)
T ss_dssp             TTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            666666666665532 25566666666666666666666666666665322 45566666666666 4443555     3


Q ss_pred             HHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---------CHHHH
Q 038914          284 RLLELMILRGVKPDTSTYNTLIDGYCLTG--KIDRARELFVSMESNGCMHDVVSYSILINGYCKTK---------DVEEG  352 (570)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~A  352 (570)
                      ..+++++... +-+...|..+..++...|  ++++|.+.+..+ +. .+.+...+..++.+|.+.|         .+++|
T Consensus       261 ~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A  337 (382)
T 2h6f_A          261 QYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA  337 (382)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            5566655542 224455555555555555  456666666555 22 2334555556666665542         23566


Q ss_pred             HHHHHHH
Q 038914          353 LNLYRKM  359 (570)
Q Consensus       353 ~~~~~~~  359 (570)
                      +++|+++
T Consensus       338 ~~~~~~l  344 (382)
T 2h6f_A          338 LELCEIL  344 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666666

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.73  E-value=6.5e-16  Score=133.47  Aligned_cols=194  Identities=15%  Similarity=0.037  Sum_probs=91.5

Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914          368 VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDG  447 (570)
Q Consensus       368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  447 (570)
                      ...+..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..++++.+.. |.+...+..+..+
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~   82 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA   82 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3344444444444444555544444444432 2334444444444555555555555555544443 3344444444445


Q ss_pred             HHhc-----------CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038914          448 LCKH-----------GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML  516 (570)
Q Consensus       448 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  516 (570)
                      +...           |++++|...+++..+.. +.+...+..++.++...|++++|+..|+++++..  .+...+..+..
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~  159 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence            5544           55555555555555531 2233455555555555555555555555555543  44555555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhh
Q 038914          517 GFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFK  567 (570)
Q Consensus       517 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  567 (570)
                      ++...|++++|+..++++++.. +.+...+..+..++.+.|++++|+..|+
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            5555555555555555555432 2234455555555555555555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=8.6e-16  Score=132.71  Aligned_cols=200  Identities=15%  Similarity=0.025  Sum_probs=137.9

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          149 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA  228 (570)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  228 (570)
                      +++...+..+...+.+.|++++|+..|+++.+.+       +.+...+..+..++.+.|++++|+..|++..+.+ +.+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~   73 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL   73 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence            4566777888888888888888888888888765       5567788888888888888888888888888764 3366


Q ss_pred             HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 038914          229 VTYTSLICGFCYA-----------NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPD  297 (570)
Q Consensus       229 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  297 (570)
                      ..+..+..++...           |++++|+..+++.++..+ -+...+..+..++...|++++|+..|+++++.+  .+
T Consensus        74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~  150 (217)
T 2pl2_A           74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT  150 (217)
T ss_dssp             HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence            7788888888887           777777777777776532 245667777777777777777777777777765  56


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKML  360 (570)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  360 (570)
                      ...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..+++..
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            6677777777777777777777777776654 3456667777777777777777777776544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.6e-15  Score=134.14  Aligned_cols=222  Identities=14%  Similarity=0.027  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HhhHHHH
Q 038914          266 FTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM--HD----VVSYSIL  339 (570)
Q Consensus       266 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l  339 (570)
                      +..+...+...|++++|..+++++.+..  .+...+..+..++...|++++|...++++.+....  ++    ..++..+
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            3344444444444444444444444443  33444444444444444444444444444332100  00    3444455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 038914          340 INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYI  419 (570)
Q Consensus       340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  419 (570)
                      ..++...|++++|+..|+++...  .|+.       ..+...|++++|...++.+.... +.+...+..+...+...|++
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence            55555555555555555555543  1221       12333344444444444444432 22233444444444444555


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM  499 (570)
Q Consensus       420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  499 (570)
                      ++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|...++++
T Consensus       156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            55555555444433 3334444444444444444444444444444421 222334444444444444444444444444


Q ss_pred             HH
Q 038914          500 EA  501 (570)
Q Consensus       500 ~~  501 (570)
                      .+
T Consensus       234 ~~  235 (258)
T 3uq3_A          234 RT  235 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.8e-15  Score=135.14  Aligned_cols=226  Identities=9%  Similarity=0.034  Sum_probs=194.3

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhH
Q 038914          298 TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR--PT----VVTY  371 (570)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~  371 (570)
                      ...+..+...+...|++++|...++++.+..  .+...+..+..++...|++++|+..++++.+....  ++    ...+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4567788899999999999999999998876  67889999999999999999999999998875211  12    4778


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914          372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH  451 (570)
Q Consensus       372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  451 (570)
                      ..+...+...|++++|...++.+.+..  |+.       ..+...|++++|...++.+.... +.+...+..++..+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            889999999999999999999998753  342       34667788999999999998765 55677888999999999


Q ss_pred             CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914          452 GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL  531 (570)
Q Consensus       452 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  531 (570)
                      |++++|...++++.+.. +.+..++..++.++...|++++|...++++++.. +.+...+..+..++...|++++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999998863 4467889999999999999999999999999853 445788999999999999999999999


Q ss_pred             HHHHhC
Q 038914          532 HRMDMR  537 (570)
Q Consensus       532 ~~~~~~  537 (570)
                      ++..+.
T Consensus       231 ~~a~~~  236 (258)
T 3uq3_A          231 DAARTK  236 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999853

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.70  E-value=7.3e-15  Score=132.35  Aligned_cols=250  Identities=9%  Similarity=-0.016  Sum_probs=149.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 038914          300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT--VVTYHTLFLG  377 (570)
Q Consensus       300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~  377 (570)
                      .+......+...|++++|+..++++.+.. +.+...+..+..++...|++++|+..++++...+..++  ..++..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            33444555566666666666666665543 22444566666666666666666666666665321111  1235566666


Q ss_pred             HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038914          378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIA  457 (570)
Q Consensus       378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  457 (570)
                      +...|++++|+..++...+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...+...+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666543 3345666677777777777777777777766553 44556666666333444577777


Q ss_pred             HHHHHhhhhCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 038914          458 WELFSSLPRVGLMADVVTYNIMIHGLCNDGQ---MDKAHGLFLDMEAKG-LEPN------FVIFNTLMLGFIRNNETSKV  527 (570)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a  527 (570)
                      ...|+++.+.. +.+...+..++.++...|+   +++|...++++.+.. -.|+      ..+|..+...|...|++++|
T Consensus       162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            77777777642 2234566667777777776   777777777766531 1122      24566677777778888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          528 IELLHRMDMRNVMPDASTLSIVVDLLV  554 (570)
Q Consensus       528 ~~~~~~~~~~~~~p~~~~~~~l~~~~~  554 (570)
                      ...++++.+.. +.+......+.....
T Consensus       241 ~~~~~~al~~~-p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          241 DAAWKNILALD-PTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHC----
T ss_pred             HHHHHHHHhcC-ccHHHHHHHhhhhhc
Confidence            88888887543 233444444444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.68  E-value=1.8e-12  Score=129.21  Aligned_cols=429  Identities=11%  Similarity=0.061  Sum_probs=225.0

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCC
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESR  132 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~  132 (570)
                      ...+-+..|+..+..+|  .+..+|..++..+.+.+.++.+..+|++++..  .| ....|...+..-.+.       ++
T Consensus        47 ~~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~-------~~  115 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDK-------ME  115 (679)
T ss_dssp             CCSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC---------
T ss_pred             CCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhh-------CC
Confidence            46677888999999999  89999999999999999999999999999987  44 445555555554443       46


Q ss_pred             ---HHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHhCCCCCCccc-CC-ChhhHHH
Q 038914          133 ---IMEAAALFTKLRVFGC-EPDVFTYNTLINGLCRTGHT--------IVALNLFEEMANGNGEIGVVC-KP-DTVTYTT  198 (570)
Q Consensus       133 ---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~-~~-~~~~~~~  198 (570)
                         ++.+..+|++.+.... +|++..|...+....+.++.        +...++|+.+...-+     . .+ ....|..
T Consensus       116 ~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG-----~~d~~s~~iW~~  190 (679)
T 4e6h_A          116 ELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA-----IFEPKSIQFWNE  190 (679)
T ss_dssp             CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT-----TTCSSCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-----cccccchHHHHH
Confidence               9999999999998631 37888888888766665554        334578888775321     2 23 3567777


Q ss_pred             HHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHH
Q 038914          199 IIDGLC---------KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY-------------ANDWNEAKHLFIEMMD  256 (570)
Q Consensus       199 l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~  256 (570)
                      .+....         ..++++.+..+|++++......-..+|......-..             ..+++.|...+.++..
T Consensus       191 Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~  270 (679)
T 4e6h_A          191 YLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLN  270 (679)
T ss_dssp             HHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            776544         234578899999999864211112333322211111             0122233333333221


Q ss_pred             C--CCC---CC--------------------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 038914          257 Q--GVQ---PN--------------------VVTFTVIMDELCKNG-------KMDGASRLLELMILRGVKPDTSTYNTL  304 (570)
Q Consensus       257 ~--~~~---~~--------------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l  304 (570)
                      .  ++.   |.                    ...|...+..--..+       ..+.+..+|++++.. .+-....|...
T Consensus       271 ~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~y  349 (679)
T 4e6h_A          271 ITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNM  349 (679)
T ss_dssp             HTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH
T ss_pred             HHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            0  110   00                    011222222111111       012233445555543 23344555555


Q ss_pred             HHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC-------
Q 038914          305 IDGYCLTGKIDRAR-ELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGI---------RPT-------  367 (570)
Q Consensus       305 ~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~-------  367 (570)
                      +..+...|+.++|. .+|+..... ++.+...|...+....+.|++++|.++|++++....         .|+       
T Consensus       350 a~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~  428 (679)
T 4e6h_A          350 ANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ  428 (679)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence            55555555555554 666655543 233444455555555555666666666665554200         011       


Q ss_pred             -----hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhH
Q 038914          368 -----VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN-GYIVKAVELFRTLRILKYELNIVSY  441 (570)
Q Consensus       368 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~  441 (570)
                           ...|...+....+.|..+.|..+|..+.+........+|...+..-.+. ++.+.|..+|+...+.. +.+...|
T Consensus       429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w  507 (679)
T 4e6h_A          429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYI  507 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHH
Confidence                 1123333444444455555555555554431111122222222222222 23555555555554431 3344444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      ...+......|+.+.|..+|+..+.....+  ....|...+..-...|+.+.+.++.+++.+
T Consensus       508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445554455555555555555555432111  123444444444455555555555555554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=2e-14  Score=129.53  Aligned_cols=235  Identities=12%  Similarity=0.116  Sum_probs=133.2

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc--
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV--  152 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--  152 (570)
                      ..+...+..+...|++++|+..|+++++..  |+. ..+..+...+..       .|++++|+..++++......++.  
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~   74 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYE-------LAKYDLAQKDIETYFSKVNATKAKS   74 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHH-------TTCHHHHHHHHHHHHTTSCTTTCCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhccCchhHHH
Confidence            345556666666666666666666666652  222 233333333333       24666666666666653211111  


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914          153 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT  232 (570)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  232 (570)
                      .+|..+..++...|++++|+..|+++.+.+       +.+..++..+..+|...|++++|++.|++..+.. +.+...+.
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~  146 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFY  146 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHH
Confidence            125666666777777777777777776654       3345666777777777777777777777666652 23555566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HhhHH
Q 038914          233 SLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGK---MDGASRLLELMILRG-VKPD------TSTYN  302 (570)
Q Consensus       233 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~  302 (570)
                      .+...+...+++++|...++++.+.. +.+...+..+..++...|+   +++|...++++.+.. ..|+      ..++.
T Consensus       147 ~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  225 (272)
T 3u4t_A          147 ELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE  225 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            66623334447777777777766642 2234555556666666666   666666666665431 1122      13455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914          303 TLIDGYCLTGKIDRARELFVSMESNG  328 (570)
Q Consensus       303 ~l~~~~~~~~~~~~a~~~~~~~~~~~  328 (570)
                      .+...|...|++++|...++++.+..
T Consensus       226 ~l~~~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          226 YIAYYYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            55566666666666666666665543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.68  E-value=2.2e-15  Score=136.08  Aligned_cols=251  Identities=11%  Similarity=0.000  Sum_probs=179.0

Q ss_pred             CcchhhCCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH
Q 038914          125 SSLCVESRIMEAAALFTKLRVFGC---EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID  201 (570)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (570)
                      ......|++++|+..|+++.+...   +.+..++..++..+...|++++|+..|+++.+.+       +.+..++..++.
T Consensus        13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~   85 (275)
T 1xnf_A           13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGI   85 (275)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHH
T ss_pred             eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHH
Confidence            344556899999999999987632   1235678888889999999999999999998865       456788899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                      ++...|++++|.+.|+++.... +.+..++..+..++...|++++|...++++.+.  .|+.......+..+...|++++
T Consensus        86 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~  162 (275)
T 1xnf_A           86 YLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ  162 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHH
Confidence            9999999999999999988863 336788888889999999999999999988875  3444444445555567788888


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM---HDVVSYSILINGYCKTKDVEEGLNLYRK  358 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~  358 (570)
                      |...+++..... +++... ..++..+...++.++|...++.+......   .+...+..+..++...|++++|...|++
T Consensus       163 A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  240 (275)
T 1xnf_A          163 AKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL  240 (275)
T ss_dssp             HHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888887777653 233333 34666677777788888888877654211   0145677777788888888888888888


Q ss_pred             HHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914          359 MLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLF  391 (570)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  391 (570)
                      +....  |+.  +.....++...|++++|+..+
T Consensus       241 al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          241 AVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            77652  322  223344555666666666554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=8.4e-17  Score=160.22  Aligned_cols=154  Identities=15%  Similarity=0.188  Sum_probs=126.6

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhH
Q 038914          400 AANTYIYTTFIDGLCKNGYIVKAVELFRTLRI---LKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTY  476 (570)
Q Consensus       400 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  476 (570)
                      .....+|+++|.+|++.|++++|..+|+.|.+   .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            34456899999999999999999999988753   467899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 038914          477 NIMIHGLCNDGQM-DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD------ASTLSIV  549 (570)
Q Consensus       477 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l  549 (570)
                      ++++.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+    +.+++.++++ ..++.|+      ..+...|
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL  278 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence            9999999999974 7889999999999999999999988765544    3455666555 3455554      4566667


Q ss_pred             HHHHHccCc
Q 038914          550 VDLLVKNEI  558 (570)
Q Consensus       550 ~~~~~~~g~  558 (570)
                      .+.+.+.+.
T Consensus       279 ~dl~s~d~~  287 (1134)
T 3spa_A          279 RDVYAKDGR  287 (1134)
T ss_dssp             HHHHCCCSC
T ss_pred             HHHHccCCC
Confidence            777766654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=2.3e-15  Score=135.97  Aligned_cols=254  Identities=9%  Similarity=-0.037  Sum_probs=167.6

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQ  122 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (570)
                      .+......|++++|+..|+.+++..+.  +.+..++..++.++...|++++|+..|++++...+ .+...+..+...+..
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHH
Confidence            444556778999999999999987431  24567889999999999999999999999998732 234444444444444


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  202 (570)
                             .|++++|+..|++++... +.+..++..++.++...|++++|+..|+++.+..        |+.......+..
T Consensus        90 -------~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~  153 (275)
T 1xnf_A           90 -------AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLYL  153 (275)
T ss_dssp             -------TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred             -------ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCChHHHHHHHH
Confidence                   458888888888888764 3356778888888888888888888888888754        443344444455


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCh
Q 038914          203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP---NVVTFTVIMDELCKNGKM  279 (570)
Q Consensus       203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~  279 (570)
                      +...|++++|...+++..... +++...+ .++..+...++.++|...+..........   +..++..+..++...|++
T Consensus       154 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  231 (275)
T 1xnf_A          154 AEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL  231 (275)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence            566688888888887766642 2333333 35666667777777777777765532110   135566666677777777


Q ss_pred             hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038914          280 DGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELF  321 (570)
Q Consensus       280 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  321 (570)
                      ++|...|+++....  |+.  +.....++...|++++|++.+
T Consensus       232 ~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          232 DSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            77777777776542  221  222234455556666655544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.67  E-value=4.8e-15  Score=131.02  Aligned_cols=199  Identities=14%  Similarity=0.116  Sum_probs=134.1

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC  119 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  119 (570)
                      ..+...|......|++++|+..|+.+++..|  .+..++..++.++...|++++|+..|+++.+... .+...+..+...
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~  100 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV  100 (243)
T ss_dssp             ------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence            4455567777889999999999999999888  7788999999999999999999999999987632 233344444444


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI  199 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  199 (570)
                      +..       .|++++|+..++++.+.. +.+..++..++..+...|++++|+..++++.+..       +.+...+..+
T Consensus       101 ~~~-------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l  165 (243)
T 2q7f_A          101 YVV-------KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------ENDTEARFQF  165 (243)
T ss_dssp             HHH-------TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred             HHH-------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CccHHHHHHH
Confidence            433       458888888888877764 3355667777777888888888888888877754       3456677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      +.++...|++++|++.|+++.... +.+..++..+..++...|++++|...++++.+.
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            777777888888888877777653 235667777777777777777777777777664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=2.1e-13  Score=122.73  Aligned_cols=222  Identities=14%  Similarity=0.020  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038914          194 VTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQPNVVTFTVI  269 (570)
Q Consensus       194 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  269 (570)
                      .++..+...+...|++++|++.|++..+.   -+...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l   80 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            33344444444444444444444444431   123333344444444    444444444444444432   33334444


Q ss_pred             HHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038914          270 MDELCK----NGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCL----TGKIDRARELFVSMESNGCMHDVVSYSILIN  341 (570)
Q Consensus       270 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  341 (570)
                      ...|..    .+++++|...|++..+.+   +...+..+..+|..    .+++++|...+++..+.+   +...+..+..
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            444444    444444444444444432   33344444444444    444444444444444432   3333444444


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 038914          342 GYCK----TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE----VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGL  413 (570)
Q Consensus       342 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  413 (570)
                      +|..    .+++++|+..|++..+.+   +...+..+...+..    .+++++|...++...+.+   +...+..+..+|
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~  228 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  228 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence            4444    445555555555444432   23344444444444    555555555555544432   133444444455


Q ss_pred             Hh----cCCHHHHHHHHHHHHHcC
Q 038914          414 CK----NGYIVKAVELFRTLRILK  433 (570)
Q Consensus       414 ~~----~~~~~~a~~~~~~~~~~~  433 (570)
                      ..    .+++++|...|++..+.+
T Consensus       229 ~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          229 YNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HcCCCcccCHHHHHHHHHHHHHcC
Confidence            54    555555555555555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=1.6e-16  Score=158.18  Aligned_cols=116  Identities=10%  Similarity=0.136  Sum_probs=78.0

Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038914          368 VVTYHTLFLGLFEVHQVEHALKLFDEMRR---NHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCL  444 (570)
Q Consensus       368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  444 (570)
                      ..+|+.++.+|++.|++++|..+|..|.+   .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            34667777777777777777777766543   356667777777777777777777777777777777777777777777


Q ss_pred             HHHHHhcCC-HHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914          445 IDGLCKHGR-LEIAWELFSSLPRVGLMADVVTYNIMIHGL  483 (570)
Q Consensus       445 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  483 (570)
                      +.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~  246 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE  246 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence            777776665 356667777777777777777766665443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=3.3e-13  Score=121.47  Aligned_cols=219  Identities=12%  Similarity=-0.037  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038914          301 YNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK----TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL  376 (570)
Q Consensus       301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  376 (570)
                      +..+...+...|++++|...|++..+.   .+...+..+...|..    .+++++|+..|++..+.+   +...+..+..
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~   82 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            333334444444444444444444432   123333444444444    444444444444444432   3333444444


Q ss_pred             HHhh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038914          377 GLFE----VHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----NGYIVKAVELFRTLRILKYELNIVSYNCLIDGL  448 (570)
Q Consensus       377 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  448 (570)
                      .+..    .+++++|+..|+...+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+...|
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~  156 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence            4444    444444444444444432   33444444444444    455555555555554432   333444444444


Q ss_pred             Hh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038914          449 CK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR  520 (570)
Q Consensus       449 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  520 (570)
                      ..    .+++++|...|++..+.+   +...+..+..+|..    .+++++|...+++..+.+   +...+..+...|..
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~  230 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN  230 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence            44    555555555555555432   33444455555555    555555555555555532   24444445555555


Q ss_pred             ----cCCHHHHHHHHHHHHhC
Q 038914          521 ----NNETSKVIELLHRMDMR  537 (570)
Q Consensus       521 ----~g~~~~a~~~~~~~~~~  537 (570)
                          .+++++|.+++++..+.
T Consensus       231 g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          231 GEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             TSSSSCCSTTHHHHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHc
Confidence                55555555555555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=2.6e-14  Score=126.31  Aligned_cols=199  Identities=15%  Similarity=0.123  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 038914          334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGL  413 (570)
Q Consensus       334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  413 (570)
                      ..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  101 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY  101 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence            344555555566666666666666665532 2244555555666666666666666666655543 33455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038914          414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAH  493 (570)
Q Consensus       414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  493 (570)
                      ...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence            66777777777777666654 4456666666667777777777777777766542 334556666777777777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          494 GLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ..++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus       180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            7777766642 334566666777777777777777777777653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=1.3e-13  Score=122.56  Aligned_cols=194  Identities=13%  Similarity=0.031  Sum_probs=123.2

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS  125 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  125 (570)
                      |......|++++|+..|+.+++..|  .+..++..++.++...|++++|++.|+++..... .+...+..+...+..   
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~---  117 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE---  117 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH---
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH---
Confidence            3334456688888888888887776  6677788888888888888888888888776631 133333333333333   


Q ss_pred             cchhhCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914          126 SLCVESRIMEAAALFTKLRVFGCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC  204 (570)
Q Consensus       126 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  204 (570)
                          .|++++|+..++++...+..| +..++..++.++...|++++|+..|+++.+..       +.+...+..++.++.
T Consensus       118 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~  186 (252)
T 2ho1_A          118 ----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------RNQPSVALEMADLLY  186 (252)
T ss_dssp             ----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHH
T ss_pred             ----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHH
Confidence                347777777777766521122 34456666666667777777777777766643       334566666666667


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          205 KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       205 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus       187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            7777777777776666542 235555666666666666666666666666654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=1.5e-13  Score=122.10  Aligned_cols=200  Identities=11%  Similarity=-0.050  Sum_probs=124.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 038914          334 VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGL  413 (570)
Q Consensus       334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  413 (570)
                      ..+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            345555555666666666666666655542 2244555556666666666666666666665543 33455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 038914          414 CKNGYIVKAVELFRTLRILKY-ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKA  492 (570)
Q Consensus       414 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  492 (570)
                      ...|++++|..+++++...+. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            677777777777776665111 2244556666667777777777777777766642 23456666777777777777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          493 HGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ..+++++.+. .+.+...+..+...+...|++++|.++++++.+.
T Consensus       195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            7777777664 2335556666666777777777777777777654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.63  E-value=1.4e-11  Score=122.89  Aligned_cols=444  Identities=12%  Similarity=0.033  Sum_probs=298.1

Q ss_pred             hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC---
Q 038914           91 YDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH---  167 (570)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  167 (570)
                      ..+.+..|++.+... +-|...|..++..+...       +.++.+..+|++++.. ++.....|...+....+.|.   
T Consensus        48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~-------~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~  118 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSL-------KQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELD  118 (679)
T ss_dssp             CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCC
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcch
Confidence            344555666666664 35788888888887664       4899999999999987 35567789889998888898   


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHH
Q 038914          168 TIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV--------DKAKELFLKMKD-ENI-NP-NAVTYTSLIC  236 (570)
Q Consensus       168 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~  236 (570)
                      ++.+..+|++.+....     .+|++..|...+....+.++.        +...++|+.... .|. .+ +...|...+.
T Consensus       119 ~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~  193 (679)
T 4e6h_A          119 AAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH  193 (679)
T ss_dssp             HHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            9999999999998631     138888999888876665543        344577877664 354 44 4567777776


Q ss_pred             HHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------------cCChhHHHHHHHHHHHC--
Q 038914          237 GFCY---------ANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCK-------------NGKMDGASRLLELMILR--  292 (570)
Q Consensus       237 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~--  292 (570)
                      ....         .++++.+..+|+.++......-..+|......-..             ..+++.|...+.++...  
T Consensus       194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~  273 (679)
T 4e6h_A          194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK  273 (679)
T ss_dssp             HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            5432         34577888999998863221112233221111111             11233344444443221  


Q ss_pred             CCC---------------C-----C---HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914          293 GVK---------------P-----D---TSTYNTLIDGYCLTG-------KIDRARELFVSMESNGCMHDVVSYSILING  342 (570)
Q Consensus       293 ~~~---------------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  342 (570)
                      ++.               |     +   ...|...+..--..+       ..+.+..+|++++... +.....|...+..
T Consensus       274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~  352 (679)
T 4e6h_A          274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANY  352 (679)
T ss_dssp             TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHH
T ss_pred             hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence            111               1     0   123444444332222       1234567788877653 5578888888888


Q ss_pred             HHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC---------Cc-----------
Q 038914          343 YCKTKDVEEGL-NLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV---------AA-----------  401 (570)
Q Consensus       343 ~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~-----------  401 (570)
                      +...|+.++|. ++|++.... .+.+...+...+......|+++.|..+|+.+.+...         .|           
T Consensus       353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~  431 (679)
T 4e6h_A          353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS  431 (679)
T ss_dssp             HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence            88999999997 999999875 333555566777778889999999999998876310         12           


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhhhhCCCCCChhhHHHH
Q 038914          402 -NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH-GRLEIAWELFSSLPRVGLMADVVTYNIM  479 (570)
Q Consensus       402 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l  479 (570)
                       ...+|...+....+.|..+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. .+.+...|...
T Consensus       432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y  510 (679)
T 4e6h_A          432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKY  510 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHH
Confidence             23467777887788899999999999998751122344454444444444 4589999999999886 34456677788


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914          480 IHGLCNDGQMDKAHGLFLDMEAKGLEP--NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL  553 (570)
Q Consensus       480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  553 (570)
                      +......|+.+.|..+|++++.....+  ....|..++..-...|+.+.+.++.+++.+.  .|+......+.+-|
T Consensus       511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence            888888999999999999998863222  3467888888888999999999999999965  35544444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=1.6e-14  Score=138.44  Aligned_cols=303  Identities=12%  Similarity=0.032  Sum_probs=158.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-
Q 038914          226 PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN----VVTFTVIMDELCKNGKMDGASRLLELMILR----GVKP-  296 (570)
Q Consensus       226 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-  296 (570)
                      .....+......+...|++++|...|+++.+.... +    ..++..+...+...|++++|...++++...    +..+ 
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34555666667777777777777777777665321 2    245666666777777777777777765432    1111 


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCC--------------------HHH
Q 038914          297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCM-HD----VVSYSILINGYCKTKD--------------------VEE  351 (570)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~  351 (570)
                      ...++..+..++...|++++|...++++...... .+    ..++..+..+|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            1234555566666666666666666655432100 01    2244555555555555                    444


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          352 GLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNH-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLR  430 (570)
Q Consensus       352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  430 (570)
                      |+..+++....                            +   .+.+ .+....++..+...+...|++++|...+++..
T Consensus       166 A~~~~~~al~~----------------------------~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (406)
T 3sf4_A          166 AVDFYEENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  214 (406)
T ss_dssp             HHHHHHHHHHH----------------------------H---HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----------------------------H---HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            44444443321                            0   0000 01112344455555566666666666666554


Q ss_pred             HcCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          431 ILKY-ELN----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVG----LMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       431 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      +... .++    ..++..+...|...|++++|...+++..+..    ..+ ...++..++.++...|++++|...++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  294 (406)
T 3sf4_A          215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  294 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3210 011    1245556666666666666666666655321    000 03455566666666677777776666655


Q ss_pred             HC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCccc
Q 038914          501 AK----GLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMR----NVMP-DASTLSIVVDLLVKNEISL  560 (570)
Q Consensus       501 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~  560 (570)
                      +.    +..+ ...++..+..++...|++++|...+++..+.    +..+ ...++..+..++...|+..
T Consensus       295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            42    1011 1335556666666677777777766665521    1111 1345555666666665553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=3e-13  Score=117.81  Aligned_cols=205  Identities=9%  Similarity=-0.027  Sum_probs=141.7

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV  152 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  152 (570)
                      .+...|..++..+...|++++|++.|+++++... .+...+..+...+..       .|++++|...++++.... +.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~-~~~~   76 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQY-------LKVNDKAQESFRQALSIK-PDSA   76 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH-------cCChHHHHHHHHHHHHhC-CCCh
Confidence            5667788888888888888888888888887631 233344444444433       458888888888877663 3355


Q ss_pred             chHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          153 FTYNTLINGLCRT-GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       153 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      .++..++..+... |++++|+..++++.+...     .+.+...+..++.++...|++++|++.++++.+.. +.+...+
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  150 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAF  150 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTT-----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHH
Confidence            6677777778888 888888888888777210     12335677777778888888888888887777653 2356677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                      ..+...+...|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+...
T Consensus       151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            7777777777888888777777776533135556666666677777777777777777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=3.1e-15  Score=143.49  Aligned_cols=277  Identities=12%  Similarity=0.031  Sum_probs=183.5

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYNILINCFLQ  122 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (570)
                      |......|++++|+..|+.+++..|..+.  ..++..++.++...|++++|+..|++++..... .+.   .....++..
T Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~   92 (406)
T 3sf4_A           16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---LGEAKASGN   92 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc---HHHHHHHHH
Confidence            33445678999999999999999872221  357889999999999999999999998654111 111   111223333


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hhHHHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCE-PD----VFTYNTLINGLCRTGH--------------------TIVALNLFEE  177 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~  177 (570)
                      .|..+...|++++|+..+++....... ++    ..++..+...+...|+                    +++|+..+++
T Consensus        93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  172 (406)
T 3sf4_A           93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE  172 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            344455668999999999988764111 11    3478888899999999                    9999999888


Q ss_pred             HHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038914          178 MANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENI-NPN----AVTYTSLICGFCYANDWNEAKHLFI  252 (570)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~  252 (570)
                      ........+. .+....++..+..++...|++++|.+.+++...... .++    ..++..+...+...|++++|...++
T Consensus       173 al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (406)
T 3sf4_A          173 NLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  251 (406)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            7653210000 111245677888888888999999888888765310 011    2367777788888888888888887


Q ss_pred             HHHHCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          253 EMMDQGVQ-PN----VVTFTVIMDELCKNGKMDGASRLLELMILRGVK-PD----TSTYNTLIDGYCLTGKIDRARELFV  322 (570)
Q Consensus       253 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~  322 (570)
                      +....... .+    ..++..+...+...|++++|...++++...... .+    ..++..+..++...|++++|...++
T Consensus       252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  331 (406)
T 3sf4_A          252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE  331 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77643110 01    345666777777778888877777776643110 01    3355566666777777777777766


Q ss_pred             HHHh
Q 038914          323 SMES  326 (570)
Q Consensus       323 ~~~~  326 (570)
                      +..+
T Consensus       332 ~al~  335 (406)
T 3sf4_A          332 KHLE  335 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=3.7e-13  Score=117.16  Aligned_cols=202  Identities=12%  Similarity=0.020  Sum_probs=128.4

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      +..++..++..+...|++++|+..|+++.+..       +.+...+..++.++...|++++|.+.++++.... +.+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~   78 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI   78 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence            34456666777777777777777777777654       3446667777777777777777777777776653 235666


Q ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914          231 YTSLICGFCYA-NDWNEAKHLFIEMMDQGVQP-NVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY  308 (570)
Q Consensus       231 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  308 (570)
                      +..+...+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  157 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK  157 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence            66677777777 77777777777766622222 24556666666777777777777777666542 22455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                      ...|++++|...++.+.......+...+..+...+...|+.+.|..+++.+..
T Consensus       158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            66677777776666665543213455555556666666666666666666654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=2.1e-14  Score=138.02  Aligned_cols=280  Identities=11%  Similarity=0.018  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHh
Q 038914          229 VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNV----VTFTVIMDELCKNGKMDGASRLLELMILR----G-VKPDTS  299 (570)
Q Consensus       229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~  299 (570)
                      ..+..+...+...|++++|+..|+++.+.... +.    ..+..+..++...|++++|...+++++..    + ......
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            33444556666667777777777666664221 22    34555666666666666666666665542    0 011223


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCC
Q 038914          300 TYNTLIDGYCLTGKIDRARELFVSMESNG-----CMHDVVSYSILINGYCKTKD----------VEEGLNLYRKMLSKGI  364 (570)
Q Consensus       300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~  364 (570)
                      .+..+..++...|++++|...++++....     .+....++..+..+|...|+          +++|...         
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------  198 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------  198 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence            44445555555555555555555543320     01112233344444444444          0000000         


Q ss_pred             CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-
Q 038914          365 RPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN----H-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LN-  437 (570)
Q Consensus       365 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-  437 (570)
                                         +++|+..+++..+.    + .......+..+...+...|++++|...+++..+.... .+ 
T Consensus       199 -------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  259 (411)
T 4a1s_A          199 -------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR  259 (411)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             -------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence                               55555554443321    1 1112345666777778888888888888776643210 11 


Q ss_pred             ---hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC----C-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC
Q 038914          438 ---IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL----M-ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLE  505 (570)
Q Consensus       438 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~  505 (570)
                         ..++..+..+|...|++++|...++++.+...    . ....++..++.++...|++++|..+++++...    +..
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  339 (411)
T 4a1s_A          260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR  339 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence               23677788888889999999988887765310    0 11456778888899999999999999887753    111


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          506 P-NFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       506 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      + ...++..+..++...|++++|...+++..+.
T Consensus       340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            1 1346777888899999999999999998753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.59  E-value=1.4e-14  Score=134.93  Aligned_cols=275  Identities=12%  Similarity=0.037  Sum_probs=169.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHH
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPP----VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYNILINCF  120 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~  120 (570)
                      |......|++++|+..|+.+++..|  .+    ..++..++..+...|++++|++.++++...... .+.   .....++
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~   86 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---LGEAKAS   86 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc---HHHHHHH
Confidence            4444567899999999999999987  44    467889999999999999999999998754111 111   1122233


Q ss_pred             HhcCCcchhhCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hhHHHHHH
Q 038914          121 LQNGSSLCVESRIMEAAALFTKLRVFGCE-PD----VFTYNTLINGLCRTGH--------------------TIVALNLF  175 (570)
Q Consensus       121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~  175 (570)
                      ...|..+...|++++|...+++..+.... ++    ..++..+...+...|+                    +++|+..+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            33344455678999999999998764211 11    2377888889999999                    89999888


Q ss_pred             HHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          176 EEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENI-----NPNAVTYTSLICGFCYANDWNEAKHL  250 (570)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~  250 (570)
                      ++........+. .......+..+...+...|++++|.+.+++..+...     .....++..+...+...|++++|...
T Consensus       167 ~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          167 EENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            887653100000 111244677788888888888888888887764310     00123566666777777777777777


Q ss_pred             HHHHHHCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHhhHHHHHHHHHhcCCHHHHHHH
Q 038914          251 FIEMMDQGVQ-PN----VVTFTVIMDELCKNGKMDGASRLLELMILRGVK-----PDTSTYNTLIDGYCLTGKIDRAREL  320 (570)
Q Consensus       251 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~  320 (570)
                      +++....... .+    ..++..+...+...|++++|...++++......     ....++..+..++...|++++|...
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            7666542100 01    334455555666666666666666555432100     0012333444444445555555554


Q ss_pred             HHHHHh
Q 038914          321 FVSMES  326 (570)
Q Consensus       321 ~~~~~~  326 (570)
                      ++++.+
T Consensus       326 ~~~a~~  331 (338)
T 3ro2_A          326 AEKHLE  331 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=1e-12  Score=120.27  Aligned_cols=217  Identities=11%  Similarity=0.057  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 038914           56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAK-------TKHY-------DTVLSLFKRLNSTGLFPDL-YAYNILINCF  120 (570)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~  120 (570)
                      ++|+..|++++...|  .++..|..++..+..       .|++       ++|+.+|+++++.- .|+. ..+......+
T Consensus        33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence            789999999999998  899999999988764       4775       78888888887721 3433 3444444444


Q ss_pred             HhcCCcchhhCCHHHHHHHHHHHHhcCCCCC-cc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPD-VF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                      ..       .|++++|..+|+++++.  .|+ .. +|..++..+.+.|++++|..+|+++.+..       +.+...|..
T Consensus       110 ~~-------~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~  173 (308)
T 2ond_A          110 ES-------RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------RTRHHVYVT  173 (308)
T ss_dssp             HH-------TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------TCCTHHHHH
T ss_pred             Hh-------cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHH
Confidence            43       35777888888877765  333 33 67777777777777777777777777654       333444443


Q ss_pred             HHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHH
Q 038914          199 IIDGLC-KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG-VQP--NVVTFTVIMDELC  274 (570)
Q Consensus       199 l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~  274 (570)
                      .+.... ..|++++|.++|++..+.. +.+...|..++..+...|++++|..+|+..+... ..|  ....|..++....
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~  252 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            333322 2577777777777776642 2356667777777777777777777777777642 233  2445666666666


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 038914          275 KNGKMDGASRLLELMILR  292 (570)
Q Consensus       275 ~~g~~~~a~~~~~~~~~~  292 (570)
                      ..|+.+.|..+++++.+.
T Consensus       253 ~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          253 NIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            677777777777776654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.58  E-value=5.1e-14  Score=135.28  Aligned_cols=280  Identities=15%  Similarity=0.084  Sum_probs=190.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCC
Q 038914          192 DTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNA----VTYTSLICGFCYANDWNEAKHLFIEMMDQ----G-VQPN  262 (570)
Q Consensus       192 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~  262 (570)
                      ....+..+...+...|++++|++.|+++.+.+.. +.    .++..+...|...|++++|+..+++....    + ....
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3556677888999999999999999999986432 33    57888999999999999999999988763    1 1223


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 038914          263 VVTFTVIMDELCKNGKMDGASRLLELMILRG-----VKPDTSTYNTLIDGYCLTGK-----------------IDRAREL  320 (570)
Q Consensus       263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~  320 (570)
                      ..++..+...+...|++++|...++++....     ......++..+..++...|+                 +++|...
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            4677888999999999999999999987641     11223477788889999999                 7777777


Q ss_pred             HHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914          321 FVSMESN----GC-MHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMR  395 (570)
Q Consensus       321 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  395 (570)
                      +++....    +. +....++..+..++...|++++|+..+++.....  ++.             +             
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-------------~-------------  257 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REF-------------G-------------  257 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH-------------T-------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hhc-------------C-------------
Confidence            7765432    10 1112344555555556666666666555544320  000             0             


Q ss_pred             hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC--
Q 038914          396 RNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-----LNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG--  468 (570)
Q Consensus       396 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--  468 (570)
                        ........+..+..++...|++++|...++++......     ....++..+..+|...|++++|...+++..+..  
T Consensus       258 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          258 --DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence              00001224556666677777777777777766543200     114567777888888888888888888776521  


Q ss_pred             --CC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          469 --LM-ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       469 --~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                        .. ....++..++.+|...|++++|..+++++.+.
T Consensus       336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence              01 11346778888999999999999999998874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=9.7e-14  Score=129.22  Aligned_cols=275  Identities=12%  Similarity=0.017  Sum_probs=156.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHhhH
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPN----VVTFTVIMDELCKNGKMDGASRLLELMILR----GVK-PDTSTY  301 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~  301 (570)
                      +......+...|++++|...++++.+.... +    ...+..+...+...|++++|...++++...    +.. ....++
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            334445555666666666666666554211 2    234455555566666666666666554432    000 012233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhh
Q 038914          302 NTLIDGYCLTGKIDRARELFVSMESNGCM-HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE  380 (570)
Q Consensus       302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  380 (570)
                      ..+...+...|++++|...+++....... .+..                               ....++..+...+..
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~  135 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA  135 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence            44444444455555555444443322100 0100                               001234444444445


Q ss_pred             cCC--------------------HHHHHHHHHHHHhC----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038914          381 VHQ--------------------VEHALKLFDEMRRN----H-VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE  435 (570)
Q Consensus       381 ~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  435 (570)
                      .|+                    +++|...++.....    + .+....++..+...+...|++++|...++++.+....
T Consensus       136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  215 (338)
T 3ro2_A          136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  215 (338)
T ss_dssp             HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            555                    55555555444321    1 1112345666777778888888888888776543100


Q ss_pred             -C----ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 038914          436 -L----NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG----LMA-DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK---  502 (570)
Q Consensus       436 -~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  502 (570)
                       +    ...++..+...+...|++++|...+++..+..    ..+ ...++..++.++...|++++|...++++...   
T Consensus       216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence             1    12367777888888899999988888776521    011 1456777888889999999999998887653   


Q ss_pred             -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          503 -GLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       503 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                       +..+ ...++..+...+...|++++|...+++..+.
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             1111 1346777888899999999999999998753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=1e-12  Score=110.32  Aligned_cols=165  Identities=13%  Similarity=0.069  Sum_probs=79.7

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 038914          333 VVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDG  412 (570)
Q Consensus       333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  412 (570)
                      +.+|..+..+|...|++++|++.|++.++.... +..++..+...+...|++++|...+....... +.+...+..+...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            344555555555555555555555555443211 33444444445555555555555554444332 2233444444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 038914          413 LCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKA  492 (570)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  492 (570)
                      +...++++.|...+.++.... +.+...+..+..++...|++++|+..|+++.+.. +.+..+|..++.+|...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence            555555555555555554443 3344445555555555555555555555554431 22334455555555555555555


Q ss_pred             HHHHHHHHH
Q 038914          493 HGLFLDMEA  501 (570)
Q Consensus       493 ~~~~~~~~~  501 (570)
                      +..|+++++
T Consensus       161 ~~~~~~al~  169 (184)
T 3vtx_A          161 VKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=1.4e-12  Score=123.72  Aligned_cols=299  Identities=9%  Similarity=0.000  Sum_probs=141.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCCh--
Q 038914          203 LCKKGFVDKAKELFLKMKDE--NINPN--AVTYTSLICG--FCYANDWNEAK-----------HLFIEMMDQGVQPNV--  263 (570)
Q Consensus       203 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~--  263 (570)
                      +.+.+++++|..+++++.+.  ....+  ...|..++..  ....+.++.+.           +.++.+.......+.  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            45688999999999887653  12223  2333333322  11223333333           444444332100000  


Q ss_pred             --hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------C
Q 038914          264 --VTFTVIMDELCKNGKMDGASRLLELMILRGV-KP----DTSTYNTLIDGYCLTGKIDRARELFVSMESNGC------M  330 (570)
Q Consensus       264 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~  330 (570)
                        ..+......+...|++++|...++++.+.-. .+    ...++..+..++...|+++.|...+++..+...      +
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence              0111244455666666666666666654310 01    123455555666666666666666655543200      0


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 038914          331 HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR-PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTF  409 (570)
Q Consensus       331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  409 (570)
                      ....+++.+..+|...|++++|+..+++..+.... ++.                               .....++..+
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l  230 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-------------------------------QLMGRTLYNI  230 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-------------------------------HHHHHHHHHH
Confidence            01234445555555555555555555554432000 000                               0011234445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCChhhHHHHH
Q 038914          410 IDGLCKNGYIVKAVELFRTLRIL----KY-ELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV----GLMADVVTYNIMI  480 (570)
Q Consensus       410 ~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~  480 (570)
                      ..+|...|++++|...+++..+.    +. +....++..+..+|...|++++|...+++..+.    +-+.....+..+.
T Consensus       231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~  310 (383)
T 3ulq_A          231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK  310 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555555555555554431    11 222344555555555666666666655555431    0011112244455


Q ss_pred             HHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          481 HGLCNDGQ---MDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       481 ~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      ..+...|+   +++|+.++++.   +..|+ ...+..+...|...|++++|...+++..
T Consensus       311 ~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          311 SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            55555665   45555554443   12222 2344555666666666666666666655

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.55  E-value=2.9e-13  Score=131.62  Aligned_cols=215  Identities=10%  Similarity=-0.042  Sum_probs=172.0

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 038914          313 KIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV-EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLF  391 (570)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  391 (570)
                      .++++...++...... +.+...+..+..++...|++ ++|++.|+++++... .+...+..+...|...|++++|...|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4677777777766553 34777888888899999999 999999999888632 25678888888999999999999999


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CCH
Q 038914          392 DEMRRNHVAANTYIYTTFIDGLCKN---------GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH--------GRL  454 (570)
Q Consensus       392 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~  454 (570)
                      +...+..  |+...+..+..++...         |++++|+..++++.+.. +.+...|..+..+|...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            9888764  5567888888888888         88999999999888876 56778888888888888        889


Q ss_pred             HHHHHHHHhhhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038914          455 EIAWELFSSLPRVGLM---ADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELL  531 (570)
Q Consensus       455 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  531 (570)
                      ++|...|+++.+.. +   .+...|..++.+|...|++++|...|+++.+.. +.+...+..+..++...|++++|++.+
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888852 2   366788888899999999999999999888752 335667788888888888888888766


Q ss_pred             HHH
Q 038914          532 HRM  534 (570)
Q Consensus       532 ~~~  534 (570)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.54  E-value=1.3e-12  Score=123.89  Aligned_cols=225  Identities=10%  Similarity=-0.040  Sum_probs=139.1

Q ss_pred             hhCCHHHHHHHHHHHHhc--CCCCC--cchHHHHHHH--HHhcCChhHHH-----------HHHHHHHhCCCCCCcccCC
Q 038914          129 VESRIMEAAALFTKLRVF--GCEPD--VFTYNTLING--LCRTGHTIVAL-----------NLFEEMANGNGEIGVVCKP  191 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~~~  191 (570)
                      +.+++++|..+++++.+.  ..+.+  ...|..++..  ....++++.+.           +.++.+....        .
T Consensus        24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--------~   95 (383)
T 3ulq_A           24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--------A   95 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--------H
T ss_pred             HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--------C
Confidence            457999999999998764  22223  2233333332  12234444444           6666665422        1


Q ss_pred             Chhh------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038914          192 DTVT------YTTIIDGLCKKGFVDKAKELFLKMKDE----NINP-NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ  260 (570)
Q Consensus       192 ~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  260 (570)
                      +...      +......+...|++++|.+.|++....    +-.+ ...++..+...|...|++++|+..+.+..+....
T Consensus        96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  175 (383)
T 3ulq_A           96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE  175 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            1222      223667778889999999999888764    1111 2457778888888888888888888877653111


Q ss_pred             -C-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 038914          261 -P-----NVVTFTVIMDELCKNGKMDGASRLLELMILRGVK-PD----TSTYNTLIDGYCLTGKIDRARELFVSMES---  326 (570)
Q Consensus       261 -~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---  326 (570)
                       +     ...+++.+..+|...|++++|...++++++.... .+    ..++..+..+|...|++++|...+++...   
T Consensus       176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  255 (383)
T 3ulq_A          176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE  255 (383)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             1     1245667777888888888888888777653110 11    13566667777777777777777777655   


Q ss_pred             --CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          327 --NGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       327 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  361 (570)
                        ...+....++..+..++...|++++|...+++...
T Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              22122345566666777777777777777766654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=1.7e-11  Score=112.11  Aligned_cols=218  Identities=11%  Similarity=0.039  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHhh
Q 038914          315 DRARELFVSMESNGCMHDVVSYSILINGYC-------KTKDV-------EEGLNLYRKMLSKGIRPTVVTYHTLFLGLFE  380 (570)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  380 (570)
                      ++|..+|++++... +.+...|..++..+.       ..|++       ++|..+|++.+..-.+.+...+..++..+..
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            34555555554432 234445555554443       23553       5666666666552011133455555555666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHH
Q 038914          381 VHQVEHALKLFDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC-KHGRLEIAW  458 (570)
Q Consensus       381 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~  458 (570)
                      .|++++|..+|+.+.+.. +.+.. +|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|.
T Consensus       112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            666666666666665532 11222 55566666666666666666666666543 333344433332222 246666666


Q ss_pred             HHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          459 ELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG-LEP--NFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      .+|+.+++.. +.+...|..++..+...|++++|..+|++++... +.|  ....|..++..+...|+.++|..+++++.
T Consensus       190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6666666531 2244556666666666666666666666666642 233  34556666666666666666666666666


Q ss_pred             h
Q 038914          536 M  536 (570)
Q Consensus       536 ~  536 (570)
                      +
T Consensus       269 ~  269 (308)
T 2ond_A          269 T  269 (308)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=3.5e-13  Score=131.00  Aligned_cols=214  Identities=11%  Similarity=0.026  Sum_probs=175.9

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhC
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY-DTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      .+++|+..++......|  .+...+..++.++...|++ ++|++.|+++++.  .|+ ...+..+-..+       ...|
T Consensus        83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~-------~~~g  151 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVY-------WKKG  151 (474)
T ss_dssp             HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH-------HHHT
T ss_pred             HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH-------HHcC
Confidence            36677788887777666  7899999999999999999 9999999999987  454 34444444444       4457


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914          132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT---------GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  202 (570)
                      ++++|+..|+++++.  .|+..++..+..++...         |++++|+..|+++.+.+       +.+...|..+..+
T Consensus       152 ~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~  222 (474)
T 4abn_A          152 DVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLDGRSWYILGNA  222 (474)
T ss_dssp             CHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence            999999999999987  45678888999999999         99999999999999975       4568899999999


Q ss_pred             HHhc--------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038914          203 LCKK--------GFVDKAKELFLKMKDENIN--PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDE  272 (570)
Q Consensus       203 ~~~~--------g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  272 (570)
                      |...        |++++|++.|++.......  .+...|..+..+|...|++++|...|++..+... .+...+..+..+
T Consensus       223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~  301 (474)
T 4abn_A          223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQL  301 (474)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            9998        9999999999999886320  3788899999999999999999999999888643 256677888888


Q ss_pred             HHhcCChhHHHHHHHH
Q 038914          273 LCKNGKMDGASRLLEL  288 (570)
Q Consensus       273 ~~~~g~~~~a~~~~~~  288 (570)
                      +...|++++|.+.+.+
T Consensus       302 ~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          302 LEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8888888888775543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.52  E-value=1.5e-12  Score=123.21  Aligned_cols=274  Identities=14%  Similarity=0.060  Sum_probs=179.9

Q ss_pred             CCCCCCChhHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038914           48 GDITTITPNDALCVFDYMLNMRPSRPPV----TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQN  123 (570)
Q Consensus        48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (570)
                      .....|++++|+..++.++...| ..+.    .++..++..+...|++++|.+.++++........  .......++...
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l   99 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--VWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence            34457899999999999998876 3333    2567788889999999999999999876521111  111122233333


Q ss_pred             CCcchhhCCHHHHHHHHHHHHhcC----CC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhH
Q 038914          124 GSSLCVESRIMEAAALFTKLRVFG----CE--P-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTY  196 (570)
Q Consensus       124 ~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (570)
                      |..+...|++++|...+++.+...    ..  | ...++..+..++...|++++|...+++........+.  .....++
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~  177 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQLQCL  177 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGGHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHHHHHH
Confidence            445566789999999999887641    11  1 2335666888889999999999999999876532221  1124567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHH
Q 038914          197 TTIIDGLCKKGFVDKAKELFLKMKDENINPN-AVTYT-----SLICGFCYANDWNEAKHLFIEMMDQGVQPN---VVTFT  267 (570)
Q Consensus       197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~  267 (570)
                      ..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...++........+.   ...+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            7888889999999999999988765311111 11121     233447788999999988888765432111   12345


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          268 VIMDELCKNGKMDGASRLLELMILR----GVKPDT-STYNTLIDGYCLTGKIDRARELFVSMES  326 (570)
Q Consensus       268 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  326 (570)
                      .+...+...|++++|...++++...    +..++. ..+..+..++...|+.++|...++....
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            6677777888888888888776543    111111 2444455666667777777776666554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=3.3e-12  Score=107.19  Aligned_cols=167  Identities=15%  Similarity=0.090  Sum_probs=116.9

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038914          297 DTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFL  376 (570)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  376 (570)
                      +..+|..+..++...|++++|+..|+++++.. +.+..++..+..+|...|++++|+..+........ .+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence            45566667777777777777777777766654 33566677777777777777777777777666422 24555666666


Q ss_pred             HHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 038914          377 GLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEI  456 (570)
Q Consensus       377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  456 (570)
                      .+...++++.+...+....+.. +.+...+..+..++...|++++|+..|+++.+.. +.+..+|..++.+|...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            6777777777777777766653 4456667777777778888888888888777765 5567777778888888888888


Q ss_pred             HHHHHHhhhhC
Q 038914          457 AWELFSSLPRV  467 (570)
Q Consensus       457 A~~~~~~~~~~  467 (570)
                      |...|+++++.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888877763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.46  E-value=6e-13  Score=122.33  Aligned_cols=245  Identities=11%  Similarity=0.012  Sum_probs=116.1

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-
Q 038914          263 VVTFTVIMDELCKNGKMDGASRLLELMILR-------GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN------G-  328 (570)
Q Consensus       263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-  328 (570)
                      ..++..+...+...|++++|..+++++.+.       ........+..+..++...|++++|...++++...      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            344555666666666666666666666552       11222344555555666666666666666555432      1 


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 038914          329 CMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTT  408 (570)
Q Consensus       329 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  408 (570)
                      .+....++..+..++...|++++|...++++.+..                            ........+.....+..
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHHH
Confidence            11123344455555555555555555555544320                            00000001112234444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-------CCCCCh-
Q 038914          409 FIDGLCKNGYIVKAVELFRTLRIL------K-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV-------GLMADV-  473 (570)
Q Consensus       409 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-  473 (570)
                      +...+...|++++|..+++++...      + .+....++..+..+|...|++++|...++++.+.       ...+.. 
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  238 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK  238 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence            555555556666666655555432      1 0112334555566666666666666666665541       011111 


Q ss_pred             ------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          474 ------VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       474 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                            ..+..+...+...+.+.++...++..... .+.+..++..+..+|...|++++|.+++++..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                  11222222333445556666666665542 122345677777888888888888888887764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.46  E-value=4.7e-13  Score=123.04  Aligned_cols=171  Identities=13%  Similarity=0.009  Sum_probs=124.1

Q ss_pred             hcCCCCCCCCChhHHHHHHHHHHhc-------CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCH
Q 038914           44 SSGEGDITTITPNDALCVFDYMLNM-------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST------GLFPDL  110 (570)
Q Consensus        44 ~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~  110 (570)
                      ..|......|++++|+..|+.+++.       ++ +....++..++.++...|++++|+..|++++..      +..|..
T Consensus        32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  110 (311)
T 3nf1_A           32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV  110 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            3444445678999999999999874       22 256778999999999999999999999999875      112221


Q ss_pred             hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc------CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038914          111 YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF------GCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNG  183 (570)
Q Consensus       111 ~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  183 (570)
                            ...+...|..+...|++++|...++++.+.      +..+ ...++..+..++...|++++|+..|+++.....
T Consensus       111 ------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          111 ------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             ------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                  122222233445567999999999998864      2112 345688889999999999999999999987510


Q ss_pred             CC-CcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          184 EI-GVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD  221 (570)
Q Consensus       184 ~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  221 (570)
                      .. +...+....++..+..+|...|++++|.+.++++..
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            00 000122356788899999999999999999998875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.45  E-value=2.2e-11  Score=115.15  Aligned_cols=311  Identities=11%  Similarity=0.010  Sum_probs=135.5

Q ss_pred             CCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 038914          190 KPDTVTYTTIIDGL--CKKGFVDKAKELFLKMKDE--NINPN--AVTYTSLICG--FCYANDWNEAK---------HLFI  252 (570)
Q Consensus       190 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~~  252 (570)
                      .|...+-..|-..|  ...+++++|.++++++...  ....|  ...|-.++..  ..-.+.+..+.         ..++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            34444445555555  6778888888888876542  11122  2233333321  11111111122         3343


Q ss_pred             HHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          253 EMMDQGVQPNV----VTFTVIMDELCKNGKMDGASRLLELMILRGV-KPD----TSTYNTLIDGYCLTGKIDRARELFVS  323 (570)
Q Consensus       253 ~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  323 (570)
                      .+.....+.+.    ..+......+...|++++|...++++.+... .++    ..++..+..+|...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            33221100000    0122233445556666666666666654310 011    23445555555666666666655555


Q ss_pred             HHhCCC--C----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914          324 MESNGC--M----HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN  397 (570)
Q Consensus       324 ~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  397 (570)
                      ..+...  .    ....+++.+..+|...|++++|++.+++..+...                               +.
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-------------------------------~~  215 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM-------------------------------DI  215 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HT
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------Hc
Confidence            443100  0    0123444555555555555555555555443100                               00


Q ss_pred             CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC--
Q 038914          398 HVA-ANTYIYTTFIDGLCKNGYIVKAVELFRTLRI-----LKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL--  469 (570)
Q Consensus       398 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--  469 (570)
                      +.. ....++..+..+|...|++++|...+++...     .. +....++..++.++...|++++|...+++..+...  
T Consensus       216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            000 0122344444445555555555555554443     21 22234444555555555555555555555443210  


Q ss_pred             -CC-ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          470 -MA-DVVTYNIMIHGLCNDGQ---MDKAHGLFLDMEAKGLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       470 -~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                       .+ ....+..+...+...|+   +.+|+.++++.   +..|+ ...+..+...|...|++++|...+++..
T Consensus       295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             01 11223334444444444   44444444431   11222 2334455555556666666666555554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.45  E-value=2.5e-11  Score=114.72  Aligned_cols=227  Identities=10%  Similarity=0.014  Sum_probs=157.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CC-C-cCHHHHH
Q 038914          339 LINGYCKTKDVEEGLNLYRKMLSKGI-RPT----VVTYHTLFLGLFEVHQVEHALKLFDEMRRN----HV-A-ANTYIYT  407 (570)
Q Consensus       339 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~  407 (570)
                      ....+...|++++|+..|+++..... .++    ..++..+...+...|+++.|...+....+.    +. . ....++.
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34445566666666666666654310 112    235566666666777777777766665532    10 1 1234667


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCChhhHHH
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRIL----KYE-LNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV----GLMADVVTYNI  478 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~  478 (570)
                      .+..+|...|++++|...++++.+.    +.+ ....++..++.+|...|++++|...+++..+.    +.+....++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            7888888899999998888877642    111 12356888999999999999999999998761    22334678889


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038914          479 MIHGLCNDGQMDKAHGLFLDMEAKGL---EPN-FVIFNTLMLGFIRNNE---TSKVIELLHRMDMRNVMPD-ASTLSIVV  550 (570)
Q Consensus       479 l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~  550 (570)
                      ++.++...|++++|..++++..+..-   .+. ...+..+...+...|+   +++|+.++++.   +..|+ ...+..++
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la  343 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA  343 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence            99999999999999999999887421   122 3455666667778888   77888887773   33333 45777899


Q ss_pred             HHHHccCcccccchhhhh
Q 038914          551 DLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       551 ~~~~~~g~~~~a~~~~~~  568 (570)
                      ..+...|++++|+..|++
T Consensus       344 ~~y~~~g~~~~A~~~~~~  361 (378)
T 3q15_A          344 AVFESSCHFEQAAAFYRK  361 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHH
Confidence            999999999999998875

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=1.4e-10  Score=109.62  Aligned_cols=271  Identities=11%  Similarity=-0.025  Sum_probs=149.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----hhH
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVV----TFTVIMDELCKNGKMDGASRLLELMILRGV-KPDT----STY  301 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~  301 (570)
                      .......+...|++++|...+++........+..    ++..+...+...|++++|...+++...... ..+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3344456667788888888888777653222221    345566667777888888888777665311 1111    224


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----Chhh
Q 038914          302 NTLIDGYCLTGKIDRARELFVSMESN----GCM--H-DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP----TVVT  370 (570)
Q Consensus       302 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~  370 (570)
                      ..+...+...|++++|...+++....    +..  + ....+..+..++...|++++|...+++........    ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            45566677777777777777776542    111  1 22345556667777777777777777766532111    1234


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCc-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhH
Q 038914          371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAA-N-TYIYT----TFIDGLCKNGYIVKAVELFRTLRILKYELN---IVSY  441 (570)
Q Consensus       371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~  441 (570)
                      +..+...+...|++++|...++........+ . .....    ..+..+...|++++|...++........+.   ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            4555566666777777777776655321111 1 11111    122335566777777766666554321110   1134


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRV----GLMADV-VTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      ..+...+...|++++|...++++...    +..++. .++..+..++...|+.++|...+++...
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45556666667777776666665432    111111 2444555666666666666666666665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=7.3e-11  Score=102.78  Aligned_cols=206  Identities=12%  Similarity=0.003  Sum_probs=160.8

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 038914          331 HDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFI  410 (570)
Q Consensus       331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  410 (570)
                      .++..+......+...|++++|+..|++.+.....++...+..+..++...|++++|+..++...+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            46678888999999999999999999999987543677788889999999999999999999998865 44677888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC---hhhHHHHH
Q 038914          411 DGLCKNGYIVKAVELFRTLRILKYELNI-------VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD---VVTYNIMI  480 (570)
Q Consensus       411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~  480 (570)
                      .++...|++++|...++++.+.. +.+.       ..|..+...+...|++++|...|+++++.  .|+   ...+..++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            99999999999999999998875 4455       45788888899999999999999999985  455   46788888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038914          481 HGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVV  550 (570)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~  550 (570)
                      .++...|     ..+++++...+ ..+...+....  ....+.+++|+..+++..+.  .|+ ..+...+.
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~  221 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence            8886554     44556665542 23444444433  34457789999999999975  355 44444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.38  E-value=2e-11  Score=123.30  Aligned_cols=165  Identities=10%  Similarity=0.029  Sum_probs=133.3

Q ss_pred             ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038914          367 TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID  446 (570)
Q Consensus       367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  446 (570)
                      +..++..+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|+++.+.. +.+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            35678888888888888888888888888764 4467788888888888888888888888888776 556778888888


Q ss_pred             HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 038914          447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETS  525 (570)
Q Consensus       447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  525 (570)
                      +|...|++++|++.|+++++.. +.+...|+.++.+|...|++++|+..|+++++.  .| +...+..+..++...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence            8888888888888888888742 334578888888888888888888888888874  45 4677888888888888888


Q ss_pred             HHHHHHHHHHh
Q 038914          526 KVIELLHRMDM  536 (570)
Q Consensus       526 ~a~~~~~~~~~  536 (570)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888888764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=6.3e-11  Score=99.34  Aligned_cols=163  Identities=11%  Similarity=0.061  Sum_probs=109.2

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC  449 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  449 (570)
                      .+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            34445555666666666666666655442 3345566666667777777777777777766654 445666677777777


Q ss_pred             hcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038914          450 KHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIE  529 (570)
Q Consensus       450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  529 (570)
                      ..|++++|...++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..++..+...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777776642 3355667777777777777777777777777652 3356677777777777788888877


Q ss_pred             HHHHHHh
Q 038914          530 LLHRMDM  536 (570)
Q Consensus       530 ~~~~~~~  536 (570)
                      .++++.+
T Consensus       166 ~~~~~~~  172 (186)
T 3as5_A          166 HFKKANE  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.37  E-value=3.4e-11  Score=121.71  Aligned_cols=166  Identities=15%  Similarity=0.054  Sum_probs=121.8

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914          332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID  411 (570)
Q Consensus       332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  411 (570)
                      +...++.+..+|.+.|++++|++.|++.++... -+..++..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            456677777777777777777777777776522 245667777777777777777777777777654 345667777778


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      ++...|++++|++.|+++.+.. +-+...|..+..+|...|++++|+..|+++++.. +.+...+..++.++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            8888888888888888877765 5567778888888888888888888888887742 2245677788888888888888


Q ss_pred             HHHHHHHHHH
Q 038914          492 AHGLFLDMEA  501 (570)
Q Consensus       492 A~~~~~~~~~  501 (570)
                      |.+.++++++
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887777654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=1.1e-10  Score=101.73  Aligned_cols=206  Identities=13%  Similarity=0.030  Sum_probs=158.6

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914          296 PDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLF  375 (570)
Q Consensus       296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  375 (570)
                      .|...+......+...|++++|...|+++.....+++...+..+..++...|++++|+..+++....... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            3567888899999999999999999999998764367778888999999999999999999999986432 567888999


Q ss_pred             HHHhhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH
Q 038914          376 LGLFEVHQVEHALKLFDEMRRNHVAANT-------YIYTTFIDGLCKNGYIVKAVELFRTLRILKYEL--NIVSYNCLID  446 (570)
Q Consensus       376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~  446 (570)
                      ..+...|++++|+..++...+.. +.+.       ..+..+...+...|++++|+..|+++.+.. +.  +...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            99999999999999999998864 3344       457778888999999999999999998764 44  4677888888


Q ss_pred             HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 038914          447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTL  514 (570)
Q Consensus       447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l  514 (570)
                      +|...|     ...++++...+ ..+...|....  ....+.+++|+..++++.+.  .|+ ..+...+
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l  220 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence            886554     34455555532 22333443333  33456789999999999984  454 4444333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=1.2e-10  Score=97.67  Aligned_cols=162  Identities=14%  Similarity=0.040  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914          336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK  415 (570)
Q Consensus       336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  415 (570)
                      +..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            4444555555555555555555554431 1234445555555555566666666665555442 3344555556666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038914          416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGL  495 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  495 (570)
                      .|++++|...++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|...
T Consensus        89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666665553 4455566666666666666666666666666542 33445666666666667777777776


Q ss_pred             HHHHHH
Q 038914          496 FLDMEA  501 (570)
Q Consensus       496 ~~~~~~  501 (570)
                      ++++.+
T Consensus       167 ~~~~~~  172 (186)
T 3as5_A          167 FKKANE  172 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.33  E-value=1.9e-11  Score=110.51  Aligned_cols=235  Identities=12%  Similarity=0.031  Sum_probs=158.1

Q ss_pred             CCCCChhHHHHHHHHHHhc-------CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCHhhHHHH
Q 038914           50 ITTITPNDALCVFDYMLNM-------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST------GLFPDLYAYNIL  116 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~  116 (570)
                      ...|+++.|+..|+++++.       ++ +....++..++.++...|++++|+..|++++..      +..|.      .
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~   84 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA------V   84 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH------H
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH------H
Confidence            3567888888888888763       22 255778999999999999999999999999865      11121      1


Q ss_pred             HHHHHhcCCcchhhCCHHHHHHHHHHHHhc------C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-Ccc
Q 038914          117 INCFLQNGSSLCVESRIMEAAALFTKLRVF------G-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI-GVV  188 (570)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~  188 (570)
                      ..++...|..+...|++++|+..|++++..      . .+....++..+..++...|++++|+..++++.+..... +..
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  164 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD  164 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            223333334455567999999999998865      1 12235678889999999999999999999998751000 000


Q ss_pred             cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHH------HHHHH
Q 038914          189 CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-------NINP-NAVTYTSLICGFCYANDWNEAKH------LFIEM  254 (570)
Q Consensus       189 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~------~~~~~  254 (570)
                      .+....++..+..++...|++++|.+.++++...       ...+ ....+..+...+...+....+..      .++..
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC  244 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence            1223568889999999999999999999998763       1122 23344444444444333333222      22211


Q ss_pred             HHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          255 MDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                      .. ..+....++..+..+|...|++++|..++++.++.
T Consensus       245 ~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          245 KV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            11 11223457888999999999999999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=2.5e-10  Score=103.36  Aligned_cols=129  Identities=11%  Similarity=0.023  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-----
Q 038914          405 IYTTFIDGLCKN-GYIVKAVELFRTLRILKYEL-N----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-----  473 (570)
Q Consensus       405 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----  473 (570)
                      ++..+..+|... |++++|+..|++..+..... +    ..++..++..+...|++++|...|+++.+.......     
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            455556666664 77777777776665432100 1    234666667777777777777777777664211111     


Q ss_pred             -hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 038914          474 -VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV------IFNTLMLGFI--RNNETSKVIELLHRMD  535 (570)
Q Consensus       474 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~  535 (570)
                       ..|..++.++...|++++|...|++.++  +.|+..      .+..++.++.  ..+++++|+..++++.
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence             1355666677777777777777777665  233321      2333444443  3456677777766654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.28  E-value=7.3e-11  Score=106.93  Aligned_cols=216  Identities=9%  Similarity=-0.011  Sum_probs=139.6

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCH
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRI  133 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  133 (570)
                      ++++|...|+.+                +..+...|++++|++.|++++......+  .......++...|..+...|++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~   93 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNS   93 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCH
Confidence            477777777766                3467788999999999998876521110  1111223344444555566799


Q ss_pred             HHHHHHHHHHHhcCCCC-C----cchHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914          134 MEAAALFTKLRVFGCEP-D----VFTYNTLINGLCRT-GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG  207 (570)
Q Consensus       134 ~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  207 (570)
                      ++|+..|++.+...... +    ..+++.+..+|... |++++|+..|+++.+..+..+. ......++..+..++...|
T Consensus        94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g  172 (292)
T 1qqe_A           94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDG  172 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhC
Confidence            99999999887642111 1    34688899999996 9999999999999875310000 0001356788899999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHH-
Q 038914          208 FVDKAKELFLKMKDENINPNA------VTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVV------TFTVIMDELC-  274 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~-  274 (570)
                      ++++|++.|++..........      ..|..+..++...|++++|+..|++....  .|+..      .+..++.++. 
T Consensus       173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~  250 (292)
T 1qqe_A          173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNE  250 (292)
T ss_dssp             CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHc
Confidence            999999999998876432221      15677778888889999999988887764  22211      2233444443 


Q ss_pred             -hcCChhHHHHHHHHHH
Q 038914          275 -KNGKMDGASRLLELMI  290 (570)
Q Consensus       275 -~~g~~~~a~~~~~~~~  290 (570)
                       ..+++++|+..|+.+.
T Consensus       251 ~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          251 GDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             TCTTTHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHhccCC
Confidence             3345666666665543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.27  E-value=6.7e-11  Score=106.84  Aligned_cols=233  Identities=12%  Similarity=-0.017  Sum_probs=113.0

Q ss_pred             hcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhhHHHHH
Q 038914          275 KNGKMDGASRLLELMILR-------GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESN------G-CMHDVVSYSILI  340 (570)
Q Consensus       275 ~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~  340 (570)
                      ..|++++|+.++++.++.       +.+....++..+..++...|++++|...++++...      + .+....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            345566666655555431       11112334555555555555555555555554432      1 011233444455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 038914          341 NGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIV  420 (570)
Q Consensus       341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  420 (570)
                      .+|...|++++|+..++++....                            +.......+.....+..+...+...|+++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~  144 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE  144 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHH----------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence            55555555555555555444320                            00000001122345555566666666666


Q ss_pred             HHHHHHHHHHHc------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC-------CCCCC-hhhHHHHHHHHHh
Q 038914          421 KAVELFRTLRIL------K-YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV-------GLMAD-VVTYNIMIHGLCN  485 (570)
Q Consensus       421 ~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~  485 (570)
                      +|...++++...      . .+....++..+..+|...|++++|...++++.+.       ...+. ...|..+...+..
T Consensus       145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (283)
T 3edt_B          145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES  224 (283)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence            666666665543      1 1122445666677777777777777777766542       11222 2333334433333


Q ss_pred             cCChhHHHHHHHHHHH---C-C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          486 DGQMDKAHGLFLDMEA---K-G-LEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       486 ~g~~~~A~~~~~~~~~---~-~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      .+....+..+ ..+..   . + ..| ...++..+..+|...|++++|..++++.++
T Consensus       225 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          225 KDKRRDSAPY-GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             TCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCchhHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3333322222 11111   1 1 112 244667778888888888888888888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.27  E-value=7.1e-09  Score=92.74  Aligned_cols=221  Identities=9%  Similarity=0.021  Sum_probs=166.6

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHH----HhcCCc
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK--HYDTVLSLFKRLNSTGLFPDL-YAYNILINCF----LQNGSS  126 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~----~~~~~~  126 (570)
                      ..++|+..++.++..+|  .+..+|+.-..++...|  .+++++++++.++...  |.. ..+..--..+    ...+  
T Consensus        48 ~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~--  121 (306)
T 3dra_A           48 YSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNN--  121 (306)
T ss_dssp             CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcc--
Confidence            34699999999999999  88999999999999999  9999999999999874  433 2333322222    2221  


Q ss_pred             chhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914          127 LCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI--VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC  204 (570)
Q Consensus       127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  204 (570)
                        ..+++++++.+++++++.. +.+..+|+.-.-++.+.|.++  ++++.++++.+.+       +-|..+|+....++.
T Consensus       122 --~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          122 --NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLF  191 (306)
T ss_dssp             --TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred             --ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence              1258899999999999885 347788888888888889888  9999999999876       567888888877777


Q ss_pred             hcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHh
Q 038914          205 KKGF------VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNE-AKHLFIEMMDQG--VQPNVVTFTVIMDELCK  275 (570)
Q Consensus       205 ~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~  275 (570)
                      ..+.      ++++++.+++++..++ -|...|+-+...+...|+..+ +..+..++...+  ...+...+..++.++.+
T Consensus       192 ~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~  270 (306)
T 3dra_A          192 SKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ  270 (306)
T ss_dssp             SSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence            7776      7888888888877643 377788877777777776433 445555554432  12355667777777777


Q ss_pred             cCChhHHHHHHHHHHH
Q 038914          276 NGKMDGASRLLELMIL  291 (570)
Q Consensus       276 ~g~~~~a~~~~~~~~~  291 (570)
                      .|+.++|.++++.+.+
T Consensus       271 ~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          271 QKKYNESRTVYDLLKS  286 (306)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            7888888888887765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.25  E-value=1e-08  Score=99.36  Aligned_cols=206  Identities=10%  Similarity=-0.043  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHH-HHHHHH
Q 038914          315 DRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHA-LKLFDE  393 (570)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~  393 (570)
                      +.+..+|++++... +.+...|...+..+.+.|+.++|..++++.+..   |....+..   .|....+.++. ..+.+.
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~~~~l~~~  268 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAVYGDLKRK  268 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHHHHHHHHH
Confidence            45677888877753 456778888888888899999999999999886   44332221   12221111111 111111


Q ss_pred             HHhCC--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhh
Q 038914          394 MRRNH--------VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RLEIAWELFSSL  464 (570)
Q Consensus       394 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~  464 (570)
                      .....        ......+|...+....+.++.+.|..+|+++ ... +.+...|...+..-...+ +.+.|..+|+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a  346 (493)
T 2uy1_A          269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG  346 (493)
T ss_dssp             TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            10000        0111245666677777788899999999998 321 234444543333323333 699999999999


Q ss_pred             hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          465 PRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       465 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      .+.. +.+...+...+......|+.+.|..+|+++.     .....|...+..-...|+.+.+..+++++.
T Consensus       347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8752 3344556677777788999999999999873     256788888877788899999999898887

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.25  E-value=3.2e-08  Score=95.98  Aligned_cols=379  Identities=11%  Similarity=-0.026  Sum_probs=207.4

Q ss_pred             CC-ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914           52 TI-TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE  130 (570)
Q Consensus        52 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  130 (570)
                      .| +++.|+.+|+.++..-|.                 |+++.+..+|++++..  .|+...|...+....+.+      
T Consensus         7 ~~~~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~------   61 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS------   61 (493)
T ss_dssp             -----CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC------
T ss_pred             cCcchHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC------
Confidence            45 477888888888877661                 7788888999988886  567777777776665543      


Q ss_pred             CCHHHHHHHHHHHHhc-CCCC-CcchHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHH
Q 038914          131 SRIMEAAALFTKLRVF-GCEP-DVFTYNTLINGLC----RTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLC  204 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  204 (570)
                      ...+....+|+..+.. |..+ +...|...+..+.    ..|+.+.+..+|++++...      ...-...|......- 
T Consensus        62 ~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P------~~~~~~lw~~Y~~fE-  134 (493)
T 2uy1_A           62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP------MGSLSELWKDFENFE-  134 (493)
T ss_dssp             ----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC------CTTHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh------hhhHHHHHHHHHHHH-
Confidence            1235566777776653 3222 4466777666543    2456778888888888731      111112222222211 


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CC----
Q 038914          205 KKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN--GK----  278 (570)
Q Consensus       205 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~----  278 (570)
                      .......+..++.+..                     +.+..|..+++.+...-...+...|...+..-...  |-    
T Consensus       135 ~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~  193 (493)
T 2uy1_A          135 LELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRP  193 (493)
T ss_dssp             HHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHH
T ss_pred             HHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchh
Confidence            1111222222222211                     11222222232222110001122333322221111  00    


Q ss_pred             -hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          279 -MDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYR  357 (570)
Q Consensus       279 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  357 (570)
                       .+.+..+|++++... +.+...|...+..+...|+.+.|..++++....  +.+...+...    ....+.++.   ++
T Consensus       194 ~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~  263 (493)
T 2uy1_A          194 HESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAV---YG  263 (493)
T ss_dssp             HHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHH---HH
T ss_pred             hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHH---HH
Confidence             233556666666542 334566666666666777777777777777665  3333222221    111111111   12


Q ss_pred             HHHhC---------CCCC---ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHH
Q 038914          358 KMLSK---------GIRP---TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN-GYIVKAVE  424 (570)
Q Consensus       358 ~~~~~---------~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~  424 (570)
                      .+.+.         +..+   ....|...+....+.++.+.|..+|+.. +. ...+..+|...+..-... ++.+.|..
T Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~  341 (493)
T 2uy1_A          264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYN  341 (493)
T ss_dssp             HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHH
Confidence            21111         0000   1233455555555678899999999988 32 223444554333333333 36999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          425 LFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +|+...+.. +.+...+...++.....|+.+.|..+|+.+.+     ....|...+..-...|+.+.+..+++++..
T Consensus       342 ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          342 IFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999988753 33455666777777889999999999999842     466788888777788999999998888774

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.23  E-value=6.5e-09  Score=91.82  Aligned_cols=184  Identities=9%  Similarity=0.008  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 038914          317 ARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGI-RPTVVTYHTLFLGLFEVHQVEHALKLFDEMR  395 (570)
Q Consensus       317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  395 (570)
                      |+..|+++...+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455566555443 23344445666666666777777777766655432 1234555666666666777777777776665


Q ss_pred             hCCCCc-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          396 RNHVAA-----NTYIYTTFIDG--LCKNG--YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       396 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      +.  .|     +..+...++.+  ....|  ++.+|..+|+++...  .|+......++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            53  33     23444444433  22223  666777777776543  33322222333366667777777777665443


Q ss_pred             CC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 038914          467 VG---------LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFV  509 (570)
Q Consensus       467 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  509 (570)
                      ..         -+.+..++..++.+....|+  +|.+++.++.+  ..|+..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp  287 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA  287 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence            20         02244555455555555565  66666666666  345433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.22  E-value=1.1e-09  Score=97.59  Aligned_cols=210  Identities=9%  Similarity=-0.034  Sum_probs=126.3

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC--CcCHHHH
Q 038914          332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV--AANTYIY  406 (570)
Q Consensus       332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~  406 (570)
                      +...+..+...+...|++++|+..|++++..... +   ...+..+..++...|++++|+..|+.+.+..+  +.....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            4555666666677777777777777777664211 2   34556666667777777777777777665421  1123445


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHH
Q 038914          407 TTFIDGLCK--------NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNI  478 (570)
Q Consensus       407 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  478 (570)
                      ..+..++..        .|++++|...|+++.+.. +.+......+....              .+..    .-...+..
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~--------------~~~~----~~~~~~~~  153 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR--------------ELRA----KLARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH--------------HHHH----HHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH--------------HHHH----HHHHHHHH
Confidence            555666666        666777777777666553 22222222211100              0000    00012356


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC--
Q 038914          479 MIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLMLGFIRN----------NETSKVIELLHRMDMRNVMPD--  542 (570)
Q Consensus       479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~--  542 (570)
                      ++.+|...|++++|+..|+++++.  .|+    ...+..+..+|...          |++++|+..++++++.  .|+  
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~  229 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP  229 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence            778888889999999998888874  333    44667777777765          8889999999988864  244  


Q ss_pred             --HHHHHHHHHHHHccCcccccchh
Q 038914          543 --ASTLSIVVDLLVKNEISLNSIPQ  565 (570)
Q Consensus       543 --~~~~~~l~~~~~~~g~~~~a~~~  565 (570)
                        ......+..++.+.|+++++...
T Consensus       230 ~~~~a~~~l~~~~~~~~~~~~~~~~  254 (261)
T 3qky_A          230 LLRTAEELYTRARQRLTELEGDASL  254 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHH
Confidence              24555666666677776655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.20  E-value=2.1e-10  Score=116.72  Aligned_cols=173  Identities=8%  Similarity=-0.112  Sum_probs=125.9

Q ss_pred             CCCCChhHHHHHHHHHH--------hcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 038914           50 ITTITPNDALCVFDYML--------NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCF  120 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~  120 (570)
                      ...|++++|+..|+.++        +.+|  .+..++..++.++...|++++|++.|+++++.  .|+. ..+..+-.++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence            56788889999998888        6666  67788888888888899999999999888876  3433 3333333333


Q ss_pred             HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHH
Q 038914          121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTII  200 (570)
Q Consensus       121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  200 (570)
                             ...|++++|+..|+++++.. +.+..++..+..++.+.|++++ +..|+++.+.+       +.+...|..+.
T Consensus       478 -------~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg  541 (681)
T 2pzi_A          478 -------LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLA  541 (681)
T ss_dssp             -------HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHH
T ss_pred             -------HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHH
Confidence                   33568888888888888774 2356778888888888888888 88888888765       44577888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038914          201 DGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAND  243 (570)
Q Consensus       201 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  243 (570)
                      .++.+.|++++|++.|+++.+.+. -+...+..+..++...++
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence            888888888888888888876532 235666667666655444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.20  E-value=1.1e-09  Score=93.37  Aligned_cols=139  Identities=10%  Similarity=0.026  Sum_probs=97.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914          407 TTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND  486 (570)
Q Consensus       407 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  486 (570)
                      ..+..++...|++++|+..|+++.+.. |.+...+..+..++...|++++|...|+++++.. +.+..++..++.+|...
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            347778888899999999998888876 5677888888888889999999999999888853 33567788888887665


Q ss_pred             CC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914          487 GQ--MDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVD  551 (570)
Q Consensus       487 g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  551 (570)
                      |+  .+.+...++....  ..|....+.....++...|++++|+..+++.++  +.|+......+..
T Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~  198 (208)
T 3urz_A          136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence            53  3445555555432  222233445556667778889999999999885  4577655444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=1.1e-08  Score=90.48  Aligned_cols=247  Identities=9%  Similarity=-0.013  Sum_probs=165.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 038914          271 DELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVE  350 (570)
Q Consensus       271 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  350 (570)
                      +-..-.|.+..++.-.   .+............+.+++...|+++..         ....|....+..+... ...+   
T Consensus        21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~---   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK---   84 (310)
T ss_dssp             HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred             HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence            3444567777666622   2211111223333445667777766531         1112333344444333 3322   


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          351 EGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHV-AANTYIYTTFIDGLCKNGYIVKAVELFRTL  429 (570)
Q Consensus       351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  429 (570)
                       |+..|++..+.+ .++..++..+..++...|++++|++++...+..+. ..+...+...+..+.+.|+.+.|.+.++.+
T Consensus        85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             778888887764 44566667888889999999999999999877653 245677888899999999999999999999


Q ss_pred             HHcCCCC-----ChhhHHHHHHHH--HhcC--CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          430 RILKYEL-----NIVSYNCLIDGL--CKHG--RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       430 ~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      .+.  .|     +..+...++.++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++...|++++|.+.++.+.
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            876  45     355566666663  3334  899999999999774  4553333444448999999999999999766


Q ss_pred             HC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038914          501 AK-----GL----EPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDA  543 (570)
Q Consensus       501 ~~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  543 (570)
                      +.     ..    +.+..++..++......|+  +|.++++++.+.  .|+.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h  286 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH  286 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence            52     01    3356677677777777787  899999999965  4653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.17  E-value=1.7e-09  Score=92.24  Aligned_cols=137  Identities=12%  Similarity=-0.003  Sum_probs=102.3

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038914          373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG  452 (570)
Q Consensus       373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  452 (570)
                      .+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...|+++.+.. |.+..++..+..+|...|
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence            37778888999999999998888764 5567888889999999999999999999998876 667888888888876665


Q ss_pred             C--HHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038914          453 R--LEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLM  515 (570)
Q Consensus       453 ~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  515 (570)
                      +  .+.+...++....  ..|....+...+.++...|++++|+..|+++++  +.|+......+.
T Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~  197 (208)
T 3urz_A          137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence            4  4455666666543  233334455567777788999999999999988  578866554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=2.1e-10  Score=91.98  Aligned_cols=145  Identities=11%  Similarity=-0.050  Sum_probs=114.0

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhc
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQN  123 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~  123 (570)
                      .|....+.|+++.|+..++.+...+|  .+...+..++.+|.+.|++++|++.|+++++.  .|+. ..+..+-.++.  
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~--   76 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYE--   76 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH--
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH--
Confidence            46666778899999999999998877  67788999999999999999999999999988  4544 44444444444  


Q ss_pred             CCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914          124 GSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNL-FEEMANGNGEIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  202 (570)
                           ..|++++|+..|++.++.. +.+..++..+..++.+.|++++|... ++++.+.+       |.+..+|......
T Consensus        77 -----~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~l  143 (150)
T 4ga2_A           77 -----LEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQL  143 (150)
T ss_dssp             -----HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHH
T ss_pred             -----HcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHH
Confidence                 4579999999999999874 33677899999999999999877665 58888865       4567788888777


Q ss_pred             HHhcCC
Q 038914          203 LCKKGF  208 (570)
Q Consensus       203 ~~~~g~  208 (570)
                      +...|+
T Consensus       144 l~~~G~  149 (150)
T 4ga2_A          144 LDCEGE  149 (150)
T ss_dssp             HHTCCC
T ss_pred             HHHhCc
Confidence            777764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=1.5e-09  Score=96.62  Aligned_cols=100  Identities=8%  Similarity=-0.046  Sum_probs=75.2

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD---TVTYTTIIDGLCKKGFVDKAKELFLKMKDENI--N  225 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~  225 (570)
                      +...+..+...+.+.|++++|+..|+++.+..       +.+   ...+..+..++.+.|++++|+..|+++.....  +
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence            45566677777888888888888888888764       223   56778888888888888888888888887532  1


Q ss_pred             CCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 038914          226 PNAVTYTSLICGFCY--------ANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       226 ~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~  257 (570)
                      .....+..+..++..        .|++++|+..|+++++.
T Consensus        87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            124566677777777        88888888888888775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.16  E-value=3.3e-10  Score=90.86  Aligned_cols=146  Identities=10%  Similarity=-0.087  Sum_probs=101.1

Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  202 (570)
                      +|..+...|++++|+..+++..... +.+...+..+..+|.+.|++++|++.|+++.+.+       +.+..+|..+..+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~   74 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------ERDPKAHRFLGLL   74 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence            3455666778888888888876542 2234456677888888888888888888888765       4567788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038914          203 LCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHL-FIEMMDQGVQPNVVTFTVIMDELCKNGK  278 (570)
Q Consensus       203 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  278 (570)
                      |...|++++|+..|++..+.+. -+..+|..+...|...|++++|... +++..+..+ -+..+|......+...|+
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           75 YELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred             HHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence            8888888888888888877632 3677788888888888887765554 466666432 245566666666665554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.15  E-value=2.4e-10  Score=94.72  Aligned_cols=156  Identities=15%  Similarity=0.044  Sum_probs=121.6

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      ...|++++|+..|+.+++.+|  .+..++..++.++.+.|++++|+..|+++....  |+.. +..+...+..     ..
T Consensus        17 ~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~-~~~~~~~~~~-----~~   86 (176)
T 2r5s_A           17 LQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNS-YKSLIAKLEL-----HQ   86 (176)
T ss_dssp             HHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHH-HHHHHHHHHH-----HH
T ss_pred             HHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChH-HHHHHHHHHH-----Hh
Confidence            457799999999999999998  889999999999999999999999999998774  4333 2222221111     01


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCH
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFV  209 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  209 (570)
                      .+...+|+..+++.++.. +.+..++..+..++...|++++|+..|+++.+.++     ...+...+..++.++...|+.
T Consensus        87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHHHCSS
T ss_pred             hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHHhCCC
Confidence            123345788999988874 33577888999999999999999999999998752     012356888999999999999


Q ss_pred             HHHHHHHHHHHh
Q 038914          210 DKAKELFLKMKD  221 (570)
Q Consensus       210 ~~a~~~~~~~~~  221 (570)
                      ++|...|++...
T Consensus       161 ~~A~~~y~~al~  172 (176)
T 2r5s_A          161 NAIASKYRRQLY  172 (176)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999987654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.14  E-value=4.1e-09  Score=82.78  Aligned_cols=130  Identities=12%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC  484 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  484 (570)
                      .+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.+ +.+...+..++.++.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            34556666777777777777777776654 4456667777777777777888887777777643 334566777777777


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          485 NDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ..|++++|..+++++.+.. +.+...+..++..+...|++++|...++++...
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            8888888888887777642 335667777777788888888888888877643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.12  E-value=9.1e-08  Score=85.57  Aligned_cols=220  Identities=9%  Similarity=0.033  Sum_probs=162.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH----Hh
Q 038914           90 HYDTVLSLFKRLNSTGLFPDLYAY-NILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGL----CR  164 (570)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~  164 (570)
                      ..++|++++++++..  .|+..+. +.--..+...+.     .++++++..++.++..++ .+..+|+.-..++    ..
T Consensus        48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~-----~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPN-----RNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTT-----SCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHccc-----ccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence            346899999999987  5655443 222222222210     399999999999998753 3667787766666    55


Q ss_pred             c---CChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          165 T---GHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD--KAKELFLKMKDENINPNAVTYTSLICGFC  239 (570)
Q Consensus       165 ~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  239 (570)
                      .   +++++++.+++++.+.+       +.+..+|+.-..++.+.|.++  ++++.++++.+.+.. |..+|+.....+.
T Consensus       120 l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~  191 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLF  191 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            5   78999999999999976       667889998888888899888  999999999987654 8888888777777


Q ss_pred             hcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHh
Q 038914          240 YAND------WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG-ASRLLELMILRG--VKPDTSTYNTLIDGYCL  310 (570)
Q Consensus       240 ~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~  310 (570)
                      ..+.      ++++++.++.++...+. |...|+.+...+.+.|+..+ +..+..++...+  -..+...+..++.++.+
T Consensus       192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~  270 (306)
T 3dra_A          192 SKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ  270 (306)
T ss_dssp             SSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence            7776      88888888888876443 77888888888888777444 445666555432  13355677777777777


Q ss_pred             cCCHHHHHHHHHHHHh
Q 038914          311 TGKIDRARELFVSMES  326 (570)
Q Consensus       311 ~~~~~~a~~~~~~~~~  326 (570)
                      .|+.++|.++++.+.+
T Consensus       271 ~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          271 QKKYNESRTVYDLLKS  286 (306)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            8888888888888775

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.12  E-value=4.9e-09  Score=89.64  Aligned_cols=176  Identities=12%  Similarity=-0.043  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC----CHH
Q 038914          135 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG----FVD  210 (570)
Q Consensus       135 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~  210 (570)
                      +|++.|++..+.|   ++.++..+...+...+++++|+.+|++..+.+         +...+..|...|.. +    +++
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~   70 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP   70 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence            4566666666643   55667777777777777777777777776643         45666667666666 5    677


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCChhH
Q 038914          211 KAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQGVQ-PNVVTFTVIMDELCK----NGKMDG  281 (570)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~  281 (570)
                      +|++.|++..+.|   +...+..|...|..    .+++++|+.+|++..+.+.. .+...+..+...|..    .+++++
T Consensus        71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  147 (212)
T 3rjv_A           71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK  147 (212)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence            7777777776654   55666666666665    66777777777777665421 014566666666666    566777


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLT-G-----KIDRARELFVSMESNG  328 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  328 (570)
                      |..+|++..+.  ..+...+..+..+|... |     +.++|..+|+...+.|
T Consensus       148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            77777776654  12333455555555432 2     5666666666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=3e-09  Score=95.86  Aligned_cols=165  Identities=14%  Similarity=0.065  Sum_probs=132.0

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhh-HHH
Q 038914          400 AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVT-YNI  478 (570)
Q Consensus       400 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~  478 (570)
                      +.+...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++++...  .|+... ...
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            4455667778888889999999999999998876 667788899999999999999999999998874  455433 233


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccC
Q 038914          479 MIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVM-PDASTLSIVVDLLVKNE  557 (570)
Q Consensus       479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g  557 (570)
                      ....+...++.++|...++++.... +.+...+..+...+...|++++|+..++++++..-. .+...+..++.++...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            3344667788888999999988852 446788889999999999999999999999865311 12668889999999999


Q ss_pred             cccccchhhhh
Q 038914          558 ISLNSIPQFKR  568 (570)
Q Consensus       558 ~~~~a~~~~~~  568 (570)
                      +.++|+..|++
T Consensus       270 ~~~~a~~~~r~  280 (287)
T 3qou_A          270 TGDALASXYRR  280 (287)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCcHHHHHHH
Confidence            99999988875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.11  E-value=1.6e-09  Score=110.29  Aligned_cols=173  Identities=9%  Similarity=-0.030  Sum_probs=99.0

Q ss_pred             HhcCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914          344 CKTKDVEEGLNLYRKML--------SKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK  415 (570)
Q Consensus       344 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  415 (570)
                      ...|++++|++.++++.        +. .+.+...+..+...+...|++++|+..++.+.+.. +.+...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            55666666666666665        22 12234455556666666666666666666666543 3345566666666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038914          416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGL  495 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  495 (570)
                      .|++++|...|+++.+.. +.+...+..+..++...|++++ ...|+++.+.+ +.+...|..++.++...|++++|+..
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666666554 4455566666666666666666 66666666532 22345566666666666666666666


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 038914          496 FLDMEAKGLEPN-FVIFNTLMLGFIRNNE  523 (570)
Q Consensus       496 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  523 (570)
                      |+++.+  +.|+ ...+..+..++...|+
T Consensus       557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPP--TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence            666655  3343 3445555555555444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.10  E-value=3.1e-09  Score=95.72  Aligned_cols=158  Identities=13%  Similarity=0.004  Sum_probs=117.9

Q ss_pred             CCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914           48 GDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL  127 (570)
Q Consensus        48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  127 (570)
                      .....|++++|+..|+.+++.+|  .+..++..++.++.+.|++++|+..++++...  .|+..........      .+
T Consensus       126 ~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~------~l  195 (287)
T 3qou_A          126 QLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI------EL  195 (287)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH------HH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH------HH
Confidence            34457789999999999998888  77888889999999999999999999988776  4544332222221      12


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914          128 CVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG  207 (570)
Q Consensus       128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  207 (570)
                      ...++.++|+..|++.+... +.+..++..+..++...|++++|+..|+++.+.++.     ..+...+..++.++...|
T Consensus       196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----AADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----GGGGHHHHHHHHHHHHHC
T ss_pred             HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----cccchHHHHHHHHHHHcC
Confidence            23457778888888888774 336677888888888999999999999998886521     122667888888888888


Q ss_pred             CHHHHHHHHHHHHh
Q 038914          208 FVDKAKELFLKMKD  221 (570)
Q Consensus       208 ~~~~a~~~~~~~~~  221 (570)
                      +.++|...|++...
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888876543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.10  E-value=2.1e-09  Score=89.02  Aligned_cols=158  Identities=17%  Similarity=0.166  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH-HH
Q 038914          406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG-LC  484 (570)
Q Consensus       406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~  484 (570)
                      +......+...|++++|...++++.+.. |.+...+..+..++...|++++|...++++...  .|+...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence            4455566777788888888888776654 556677777888888888888888888887764  3343333222222 12


Q ss_pred             hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCccccc
Q 038914          485 NDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMP-DASTLSIVVDLLVKNEISLNS  562 (570)
Q Consensus       485 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a  562 (570)
                      ..+...+|+..++++++.  .| +...+..+..++...|++++|...++++++..-.+ +...+..++.++...|+.++|
T Consensus        86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            223334567777777774  34 46777778888888888888888888887543221 245777788888888888888


Q ss_pred             chhhhh
Q 038914          563 IPQFKR  568 (570)
Q Consensus       563 ~~~~~~  568 (570)
                      +..|++
T Consensus       164 ~~~y~~  169 (176)
T 2r5s_A          164 ASKYRR  169 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.09  E-value=1.2e-08  Score=87.21  Aligned_cols=176  Identities=15%  Similarity=0.050  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHH
Q 038914          170 VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYAN----DWN  245 (570)
Q Consensus       170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~  245 (570)
                      +|++.|++..+.+         +..++..|...|...+++++|++.|++..+.|   +...+..|...|.. +    +++
T Consensus         4 eA~~~~~~aa~~g---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~   70 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYP   70 (212)
T ss_dssp             CTTHHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHH
T ss_pred             hHHHHHHHHHHCC---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHH
Confidence            4566666666543         56677777777777777777777777777654   55666666666665 5    677


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----cCCHHH
Q 038914          246 EAKHLFIEMMDQGVQPNVVTFTVIMDELCK----NGKMDGASRLLELMILRGVK-PDTSTYNTLIDGYCL----TGKIDR  316 (570)
Q Consensus       246 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~  316 (570)
                      +|+.+|++..+.|   +...+..+...|..    .+++++|..+|++..+.+.. .+...+..|..+|..    .+++++
T Consensus        71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  147 (212)
T 3rjv_A           71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK  147 (212)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence            7777777776643   45556666666665    66677777777776655321 014555666666666    566677


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 038914          317 ARELFVSMESNGCMHDVVSYSILINGYCKT-K-----DVEEGLNLYRKMLSKG  363 (570)
Q Consensus       317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~  363 (570)
                      |..+|++..+.  +.+...+..+..+|... |     ++++|+..|++..+.|
T Consensus       148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            77777666654  12334455555555432 2     5666666666666554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=7.5e-09  Score=81.20  Aligned_cols=128  Identities=12%  Similarity=0.163  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914          371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK  450 (570)
Q Consensus       371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  450 (570)
                      +..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|..+++++.... +.+...+..++..+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            3445555556666666666666655543 3345555666666666777777777777766554 4455666667777777


Q ss_pred             cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          451 HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .|++++|...++++.+.. +.+..++..++.++...|++++|...++++..
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            777777777777776642 33455666677777777777777777777665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.08  E-value=6.3e-10  Score=101.54  Aligned_cols=135  Identities=10%  Similarity=-0.071  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH
Q 038914          154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINP-----NA  228 (570)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~  228 (570)
                      +++.+..+|...|++++|+..|+++.......|. ...-..++..+..+|.. |++++|++.|++........     ..
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~  155 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA  155 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence            4555555555666666666666655443211110 01124555666666655 66666666665554321100     13


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          229 VTYTSLICGFCYANDWNEAKHLFIEMMDQG----VQPN-VVTFTVIMDELCKNGKMDGASRLLELMI  290 (570)
Q Consensus       229 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  290 (570)
                      .++..+...|...|++++|+..|++.....    ..+. ...+..++.++...|++++|...|++.+
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            455566666666666666666666655421    1111 1244455555666667777776666666

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.08  E-value=3.1e-09  Score=106.28  Aligned_cols=153  Identities=12%  Similarity=-0.012  Sum_probs=113.7

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhh
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVE  130 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~  130 (570)
                      .|++++|+..|+++++.+|  .+..+|..++..+...|++++|++.|+++++.  .|+ ...+..+-..+.       ..
T Consensus         2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~-------~~   70 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRW-------TQ   70 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHH-------HT
T ss_pred             CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-------HC
Confidence            4789999999999999988  78899999999999999999999999999987  444 334444444444       45


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc---C
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK---G  207 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g  207 (570)
                      |++++|...|++.++.. +.+..++..+..++.+.|++++|++.|+++.+.+       +.+...+..+..++...   |
T Consensus        71 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g  142 (568)
T 2vsy_A           71 QRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWR  142 (568)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccc
Confidence            69999999999999874 3356789999999999999999999999999875       45678899999999999   9


Q ss_pred             CHHHHHHHHHHHHhCC
Q 038914          208 FVDKAKELFLKMKDEN  223 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~~  223 (570)
                      +.++|.+.+++..+.+
T Consensus       143 ~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             THHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhcC
Confidence            9999999999998864

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=2.4e-08  Score=86.42  Aligned_cols=198  Identities=9%  Similarity=-0.005  Sum_probs=111.2

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh----HHHHHHH
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA----YNILINC  119 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~  119 (570)
                      .|...+..|++++|+..|+.+++..|..+. ..++..++.++.+.|++++|+..|+++++.  .|+...    +..+-.+
T Consensus        10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~   87 (225)
T 2yhc_A           10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLT   87 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHH
Confidence            344456677777777777777777663222 356777777777777777777777777766  333321    1111111


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI  199 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  199 (570)
                      +...       +.     .            ....+..+...+...|++++|+..|+++.+..       +.+...+...
T Consensus        88 ~~~~-------~~-----~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~  136 (225)
T 2yhc_A           88 NMAL-------DD-----S------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDAT  136 (225)
T ss_dssp             HHHH-------HC-------------------------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHH
T ss_pred             HHhh-------hh-----h------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHH
Confidence            1110       00     0            01112233344456789999999999999875       2223333221


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcC
Q 038914          200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTFTVIMDELCKNG  277 (570)
Q Consensus       200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g  277 (570)
                      ....          .+...+        ......+...|...|++++|+..|+.+++..+...  ...+..+..++.+.|
T Consensus       137 ~~l~----------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  198 (225)
T 2yhc_A          137 KRLV----------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ  198 (225)
T ss_dssp             HHHH----------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHH----------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence            1110          001111        11123456778888888888888888887532211  245777888888888


Q ss_pred             ChhHHHHHHHHHHHCC
Q 038914          278 KMDGASRLLELMILRG  293 (570)
Q Consensus       278 ~~~~a~~~~~~~~~~~  293 (570)
                      ++++|.+.++.+...+
T Consensus       199 ~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          199 MNAQAEKVAKIIAANS  214 (225)
T ss_dssp             CHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHHHHhhC
Confidence            8888888888887763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=2.9e-08  Score=85.82  Aligned_cols=186  Identities=8%  Similarity=-0.036  Sum_probs=112.4

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCH--HHHH
Q 038914          332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIR-PT-VVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANT--YIYT  407 (570)
Q Consensus       332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  407 (570)
                      +...+..+...+...|++++|+..|++++..... +. ...+..+..++...|++++|+..|+.+.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3445566677788888888888888888875222 11 246677778888888888888888888765422111  2344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh-hh-----------
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADV-VT-----------  475 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~-----------  475 (570)
                      .+..++...+..     .+            ..+..+...+...|++++|...|+++++.  .|+. ..           
T Consensus        83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence            444444432100     00            00111111222234444444444444442  1221 11           


Q ss_pred             ------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914          476 ------YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLMLGFIRNNETSKVIELLHRMDMRN  538 (570)
Q Consensus       476 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  538 (570)
                            ...++..+...|++++|+..|+++++.  .|+    ...+..+..++.+.|++++|.+.++.+...+
T Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                  134667788899999999999999885  344    2467788889999999999999999888653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.04  E-value=3e-09  Score=92.68  Aligned_cols=191  Identities=7%  Similarity=-0.061  Sum_probs=119.5

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCHhh--------H--
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNIL-------FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYA--------Y--  113 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~--  113 (570)
                      ..++++.|+..|.++.+.+|  ....+|..+       +.++.+.++..+++..+.+.+..  .|+...        |  
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence            36899999999999999999  889999999       78888888888888888887764  232110        0  


Q ss_pred             --------HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038914          114 --------NILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEI  185 (570)
Q Consensus       114 --------~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  185 (570)
                              ..+--.|+   ..+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+......   
T Consensus        94 ~~~~v~~r~dl~LayA---~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---  165 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFA---ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---  165 (282)
T ss_dssp             CEEECSSHHHHHHHHH---HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---
T ss_pred             cccccCCHhHHHHHHH---HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---
Confidence                    01111111   11333467777777777666543  222244455556667777777777776443321   


Q ss_pred             CcccCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          186 GVVCKPD--TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPN--AVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       186 ~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                          .|.  ...+..+..++...|++++|++.|++.......|.  .........++...|+.++|..+|+++...
T Consensus       166 ----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          166 ----DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                111  23566666677777777777777776664322132  234555566666677777777777776664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.03  E-value=1.5e-09  Score=99.12  Aligned_cols=206  Identities=12%  Similarity=-0.037  Sum_probs=139.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVD  210 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  210 (570)
                      +++++|...|.++               +..|...|++++|...|.++.......+. ...-..+|..+..+|...|+++
T Consensus        30 ~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~   93 (307)
T 2ifu_A           30 PDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMP   93 (307)
T ss_dssp             CCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGG
T ss_pred             CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHH
Confidence            4566666665543               23455566666666666655543211110 1223678888899999999999


Q ss_pred             HHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhcCChh
Q 038914          211 KAKELFLKMKDE----NIN-PNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQP-----NVVTFTVIMDELCKNGKMD  280 (570)
Q Consensus       211 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~  280 (570)
                      +|+..|++....    |-. ....++..+..+|.. |++++|+..|++.+......     ...++..+..++...|+++
T Consensus        94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  172 (307)
T 2ifu_A           94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD  172 (307)
T ss_dssp             GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence            999999987643    211 124678888999988 99999999999887642111     1467888999999999999


Q ss_pred             HHHHHHHHHHHCC----CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HhhHHHHHHHHHhcCCHHH
Q 038914          281 GASRLLELMILRG----VKPD-TSTYNTLIDGYCLTGKIDRARELFVSMESNGCMH-D---VVSYSILINGYCKTKDVEE  351 (570)
Q Consensus       281 ~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~  351 (570)
                      +|+..|++.+...    ..+. ...+..++.++...|++++|...|++.. ..... +   ......++..+ ..++.+.
T Consensus       173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~  250 (307)
T 2ifu_A          173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ  250 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence            9999999988641    1111 2356677788888999999999999988 53211 1   12344455555 5778776


Q ss_pred             HHHH
Q 038914          352 GLNL  355 (570)
Q Consensus       352 A~~~  355 (570)
                      +..+
T Consensus       251 ~~~~  254 (307)
T 2ifu_A          251 LLRV  254 (307)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6663

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.00  E-value=4.2e-07  Score=82.08  Aligned_cols=173  Identities=11%  Similarity=0.001  Sum_probs=133.5

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC-
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES-  131 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-  131 (570)
                      ..++|+..++.++..+|  .+..+|+.-..++...| .+++++++++.++...+. +...+..-...+....      + 
T Consensus        69 ~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~------~~  139 (349)
T 3q7a_A           69 KSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRIS------PQ  139 (349)
T ss_dssp             CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHC------CS
T ss_pred             CCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhc------CC
Confidence            45689999999999999  88999999999999999 599999999999988422 3334444433333321      3 


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH
Q 038914          132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI--------VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL  203 (570)
Q Consensus       132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  203 (570)
                      ++++++.+++++++.. +.+..+|+...-++.+.|.++        ++++.++++.+.+       +-|..+|+....++
T Consensus       140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~R~~lL  211 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGWRWYLR  211 (349)
T ss_dssp             CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence            6789999999999875 337778887777776667676        9999999999976       56788999888888


Q ss_pred             HhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038914          204 CKKGF-------VDKAKELFLKMKDENINPNAVTYTSLICGFCYANDW  244 (570)
Q Consensus       204 ~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  244 (570)
                      .+.++       ++++++.++++..... -|...|+-+-..+.+.|+.
T Consensus       212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          212 VSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             TTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence            88876       6788888888887643 3777887766666665543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.98  E-value=1.4e-08  Score=101.65  Aligned_cols=153  Identities=10%  Similarity=-0.062  Sum_probs=97.6

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038914          346 TKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVEL  425 (570)
Q Consensus       346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  425 (570)
                      .|++++|++.++++.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4677778888877776522 245667777777777888888888887777654 44566777777777778888888888


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 038914          426 FRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND---GQMDKAHGLFLDMEAK  502 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  502 (570)
                      ++++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..++.++...   |++++|.+.++++.+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            88777765 4566777777777778888888888887777642 33456677777777777   7777888877777764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.91  E-value=7.5e-08  Score=87.14  Aligned_cols=176  Identities=10%  Similarity=-0.052  Sum_probs=119.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCc-----c
Q 038914           79 NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDV-----F  153 (570)
Q Consensus        79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~  153 (570)
                      ...+..+...|++++|..+++++....  +........+..+...|..+...|++++|+..|++++......+.     .
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            344677889999999999999999853  322222222222222333445567999999999999985322222     2


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 038914          154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE----NINPN-A  228 (570)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~  228 (570)
                      +++.++.+|...|++++|+..|+++.+.........+....++..++.+|.+.|++++|++.+++..+.    +..+. .
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            688999999999999999999999984210000001222447788888999999999999988877643    11112 5


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 038914          229 VTYTSLICGFCYAN-DWNEAKHLFIEMMD  256 (570)
Q Consensus       229 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~  256 (570)
                      .+|..+..++...| .+++|...+++...
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            67777778888888 45788877777654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.89  E-value=1.4e-07  Score=80.82  Aligned_cols=125  Identities=9%  Similarity=-0.086  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038914          371 YHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCK  450 (570)
Q Consensus       371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  450 (570)
                      +..+...+...|++++|+..++...    .++...+..+..++...|++++|...++++.... +.+...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            3445555666666666666666552    3455666666666666666666666666666554 4455566666666666


Q ss_pred             cCCHHHHHHHHHhhhhCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          451 HGRLEIAWELFSSLPRVGLMADV----------------VTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       451 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .|++++|...|+++.+.. +.+.                ..+..++.++...|++++|...|+++.+
T Consensus        84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            666666666666666532 1111                4555566666666666666666666665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.87  E-value=3.7e-09  Score=81.82  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=89.1

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC  119 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  119 (570)
                      ..+...|....+.|++++|+..|+++++.+|  .+..+|..++.++...|++++|++.|+++++..+. +...+..+..+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~   85 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHH
Confidence            4455677778889999999999999999998  78999999999999999999999999999876311 22234445566


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHH
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYN  156 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  156 (570)
                      +.+.|..+...|++++|+..|++.+..  .|+..+..
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  120 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK  120 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence            667777777888999999999998875  45554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.86  E-value=3.1e-08  Score=89.68  Aligned_cols=177  Identities=10%  Similarity=-0.015  Sum_probs=123.2

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC-C
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP-D  151 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~  151 (570)
                      .....+...+..+...|++++|++.+++.+.....  .......+..+...|..+...|++++|+..+++........ +
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            33455667788899999999999999999887432  22112222222333344556689999999999988642211 1


Q ss_pred             ----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          152 ----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-----TVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       152 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                          ..+++.++..|...|++++|+..|+++.+...     ..++     ..++..++.+|...|++++|++.+++....
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~-----~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-----ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                34788899999999999999999999883210     0111     257888889999999999999999887653


Q ss_pred             C----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 038914          223 N----INP-NAVTYTSLICGFCYANDWNEA-KHLFIEMMD  256 (570)
Q Consensus       223 ~----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  256 (570)
                      .    ... -..+|..+..+|...|++++| ...+++...
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            1    111 155677777888888888888 666666543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.86  E-value=8.7e-09  Score=87.62  Aligned_cols=167  Identities=12%  Similarity=-0.012  Sum_probs=111.2

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchh
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCV  129 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (570)
                      +..|++++|...++.+.. +| .....++..++..+...|++++|+..+++++......+.  ......++...|..+..
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~   78 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--HTAEHRALHQVGMVERM   78 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-ST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHH
Confidence            457899999997666644 44 356788999999999999999999999999873111110  11122333334445566


Q ss_pred             hCCHHHHHHHHHHHHhc----CCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHH
Q 038914          130 ESRIMEAAALFTKLRVF----GCE--PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGL  203 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  203 (570)
                      .|++++|...+++....    +..  ....++..+..++...|++++|+..+++........+. ......++..+..++
T Consensus        79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~  157 (203)
T 3gw4_A           79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLA  157 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHH
Confidence            78999999999987764    101  12345777888899999999999999988753210000 011133457778888


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 038914          204 CKKGFVDKAKELFLKMKD  221 (570)
Q Consensus       204 ~~~g~~~~a~~~~~~~~~  221 (570)
                      ...|++++|.+.+++...
T Consensus       158 ~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          158 QQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHH
Confidence            888888888888877664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.86  E-value=3.4e-08  Score=81.78  Aligned_cols=127  Identities=13%  Similarity=0.151  Sum_probs=99.6

Q ss_pred             cCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhc
Q 038914           45 SGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC-FLQN  123 (570)
Q Consensus        45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~  123 (570)
                      .+..+...|++++|+..|+.+++.+|  .+..+|..++.++...|++++|+..|++++.... .+...+..+... +.. 
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~-   91 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQ-   91 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHH-
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh-
Confidence            34556788999999999999999998  7889999999999999999999999999998732 233333333333 333 


Q ss_pred             CCcchhhCCH--HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          124 GSSLCVESRI--MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       124 ~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                            .|++  ++|+..+++++... +.+..++..+..++...|++++|+..|+++.+..
T Consensus        92 ------~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           92 ------ASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             ------TTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             ------cCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence                  4688  99999999999874 3356788889999999999999999999999865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.85  E-value=9.6e-08  Score=73.58  Aligned_cols=95  Identities=9%  Similarity=-0.059  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI  519 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  519 (570)
                      .+...+..|.+.|++++|+..|+++++.. +.+...|..++.++...|++++|+..++++++.. +.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            34445555555666666666666555532 2234555555566666666666666666655531 223455555556666


Q ss_pred             hcCCHHHHHHHHHHHHh
Q 038914          520 RNNETSKVIELLHRMDM  536 (570)
Q Consensus       520 ~~g~~~~a~~~~~~~~~  536 (570)
                      ..|++++|++.+++.++
T Consensus        93 ~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            66666666666666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.85  E-value=9.1e-07  Score=79.94  Aligned_cols=162  Identities=7%  Similarity=-0.029  Sum_probs=114.1

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhCCC-CcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 038914          374 LFLGLFEVHQVEHALKLFDEMRRNHV-AANT----YIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LN----IVSYNC  443 (570)
Q Consensus       374 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  443 (570)
                      .+..+...|++++|..+++...+... .++.    ..+..+...+...+++++|+..++++...... .+    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35566677888888888877765321 1221    12334555666777889999988888774322 22    226888


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhhh----C-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHH
Q 038914          444 LIDGLCKHGRLEIAWELFSSLPR----V-GLMAD-VVTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEPN-FVIFN  512 (570)
Q Consensus       444 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~  512 (570)
                      ++.+|...|++++|...|+++.+    . +..+. ..++..++.+|...|++++|+.+++++++.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            88889999999999999988874    1 11222 247888999999999999999999887752    22222 56788


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHH
Q 038914          513 TLMLGFIRNN-ETSKVIELLHRMD  535 (570)
Q Consensus       513 ~l~~~~~~~g-~~~~a~~~~~~~~  535 (570)
                      .+..++.+.| ++++|...+++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            8889999999 4699999998886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.85  E-value=3.1e-08  Score=78.75  Aligned_cols=109  Identities=11%  Similarity=-0.031  Sum_probs=87.9

Q ss_pred             HHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHH
Q 038914           62 FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALF  140 (570)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~  140 (570)
                      ++.++..+|  .+..++..++..+.+.|++++|+..|++++..  .|+. ..+..+-.++..       .|++++|+..|
T Consensus        25 l~~al~l~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~-------~g~~~~Ai~~~   93 (151)
T 3gyz_A           25 LKDINAIPD--DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQI-------KEQFQQAADLY   93 (151)
T ss_dssp             TGGGCCSCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-------TTCHHHHHHHH
T ss_pred             HHHHhCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-------HccHHHHHHHH
Confidence            445556666  77889999999999999999999999999987  4543 444444444444       46999999999


Q ss_pred             HHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          141 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      ++++... +.+..+|..+..+|.+.|++++|+..|+++.+..
T Consensus        94 ~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           94 AVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999875 3367889999999999999999999999999854

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.84  E-value=9.2e-08  Score=73.69  Aligned_cols=108  Identities=14%  Similarity=0.008  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914          404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL  483 (570)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  483 (570)
                      ..+......|.+.|++++|+..|+++++.. +.+..+|..+..+|...|++++|+..++++++.. +.+...|..++.++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            456667777888888888888888887776 5677888888888888888888888888888753 33557788888888


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 038914          484 CNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLM  515 (570)
Q Consensus       484 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~  515 (570)
                      ...|++++|++.|+++++.  .|+ ...+..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~  122 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV--DPSNEEAREGVR  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence            8888888888888888874  453 44444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.84  E-value=6.9e-08  Score=76.75  Aligned_cols=96  Identities=17%  Similarity=0.014  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914          404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL  483 (570)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  483 (570)
                      ..+..+...+.+.|++++|...|+++.... |.+...|..+..+|...|++++|...|+++.+.. +.+...|..++.+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence            345555556666666666666666666554 4455666666666666666666666666666532 22345566666666


Q ss_pred             HhcCChhHHHHHHHHHHH
Q 038914          484 CNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       484 ~~~g~~~~A~~~~~~~~~  501 (570)
                      ...|++++|...|+++++
T Consensus       115 ~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            666666666666666666

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.84  E-value=1.8e-07  Score=80.05  Aligned_cols=125  Identities=11%  Similarity=-0.086  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 038914          336 YSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK  415 (570)
Q Consensus       336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  415 (570)
                      +..+...+...|++++|+..|++..    .|+...+..+...+...|++++|+..++...+.. +.+...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            3444555555666666666665543    3355555556666666666666666666555543 3344555555566666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          416 NGYIVKAVELFRTLRILKYELNI----------------VSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .|++++|...|+++.+.. +.+.                ..+..+..++...|++++|...|+++.+
T Consensus        84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            666666666666655543 2222                4455555566666666666666666555

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.82  E-value=3.8e-06  Score=75.88  Aligned_cols=175  Identities=9%  Similarity=-0.037  Sum_probs=125.2

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038914          163 CRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG-FVDKAKELFLKMKDENINPNAVTYTSLICGFCYA  241 (570)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  241 (570)
                      .+.+..++|+++++.++..+       +.+..+|+.-..++...| .+++++++++.+...+.+ +..+|+.-..++...
T Consensus        65 ~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l  136 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI  136 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence            33455678999999998876       455777888888888888 589999999998887544 778888777777666


Q ss_pred             -C-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038914          242 -N-DWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMD--------GASRLLELMILRGVKPDTSTYNTLIDGYCLT  311 (570)
Q Consensus       242 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  311 (570)
                       + ++++++.+++.+.+.... |..+|+...-++...|.++        ++++.++++++.+ +-|...|+.....+...
T Consensus       137 ~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          137 SPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             CCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred             cCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence             6 788888999888876433 6677776666666666665        7888888888764 33666777766666666


Q ss_pred             CC-------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914          312 GK-------IDRARELFVSMESNGCMHDVVSYSILINGYCKTKD  348 (570)
Q Consensus       312 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  348 (570)
                      +.       ++++++.+++++... +.|...|+.+-..+.+.|.
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            65       567777777776654 4466677666666555554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.82  E-value=7.6e-09  Score=95.44  Aligned_cols=157  Identities=11%  Similarity=-0.065  Sum_probs=111.1

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh---------hHHHHHHHHHh
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY---------AYNILINCFLQ  122 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~  122 (570)
                      .+++++|+..|+.+...+|  .+...+..++..+.+.|++++|+..|++++...  |+..         .-.....++..
T Consensus       126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~n  201 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLN  201 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHH
Confidence            4566778877877776666  677889999999999999999999999999874  4321         00111122223


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  202 (570)
                      .|..+...|++++|+..|+++++.. +.+..++..+..++...|++++|+..|+++.+.+       +.+...+..+..+
T Consensus       202 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~  273 (336)
T 1p5q_A          202 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
Confidence            3333444568888888888887764 3356677778888888888888888888888764       4456677777888


Q ss_pred             HHhcCCHHHH-HHHHHHHH
Q 038914          203 LCKKGFVDKA-KELFLKMK  220 (570)
Q Consensus       203 ~~~~g~~~~a-~~~~~~~~  220 (570)
                      +...|+.++| ...|..|.
T Consensus       274 ~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888887777 34555554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.82  E-value=2.2e-07  Score=75.83  Aligned_cols=129  Identities=9%  Similarity=-0.062  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914          404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL  483 (570)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  483 (570)
                      ..+..+...+...|++++|...++++.... +.+..++..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345666777788888888888888887765 5567788888888888899999998888888753 34567788888888


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 038914          484 CNDGQMDKAHGLFLDMEAKGLEPNFVIFNTL--MLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      ...|++++|...++++.+.. +.+...+..+  +..+...|++++|+..+++..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            88999999999998888752 2344555333  334677888888888888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.80  E-value=4.3e-07  Score=82.12  Aligned_cols=164  Identities=7%  Similarity=-0.049  Sum_probs=106.6

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--hhhH
Q 038914          372 HTLFLGLFEVHQVEHALKLFDEMRRNHVAAN-----TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYE---LN--IVSY  441 (570)
Q Consensus       372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~  441 (570)
                      ...+..+...|++++|...+....+......     ...+..+...+...|++++|...++++......   +.  ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3344555666666666666665554321111     012233455566777888888888877643211   11  3467


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhC-CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHH
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRV-GLMAD-----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKG----LEP-NFVI  510 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~  510 (570)
                      +.++..|...|++++|...++++.+. ...|+     ..++..++.+|...|++++|+.++++.++..    ... -..+
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            78888888888888888888887631 01122     2577888888888999999998888876531    111 1567


Q ss_pred             HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 038914          511 FNTLMLGFIRNNETSKV-IELLHRMD  535 (570)
Q Consensus       511 ~~~l~~~~~~~g~~~~a-~~~~~~~~  535 (570)
                      |..+..++...|++++| ...+++..
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            78888888889999888 77777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.76  E-value=6.4e-08  Score=77.09  Aligned_cols=111  Identities=11%  Similarity=-0.064  Sum_probs=89.8

Q ss_pred             HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchhhCCHHHHHH
Q 038914           60 CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYAYNILINCFLQNGSSLCVESRIMEAAA  138 (570)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~  138 (570)
                      ..|+.++..+|  .+...+..++..+.+.|++++|+..|++++..  .| +...+..+-.++..       .|++++|+.
T Consensus         8 ~~~~~al~~~p--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~-------~g~~~~A~~   76 (148)
T 2vgx_A            8 GTIAMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQA-------MGQYDLAIH   76 (148)
T ss_dssp             CSHHHHTTCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-------TTCHHHHHH
T ss_pred             hhHHHHHcCCH--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHH-------HhhHHHHHH
Confidence            45777888877  77888999999999999999999999999987  44 34444444444444       469999999


Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          139 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      .|++++... +.+..++..+..++...|++++|+..|+++.+..
T Consensus        77 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           77 SYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999998874 3367788889999999999999999999998854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.75  E-value=5.8e-08  Score=87.02  Aligned_cols=98  Identities=12%  Similarity=-0.089  Sum_probs=68.5

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      ...+..+...+.+.|++++|+..|+++....       +.+...|..+..+|.+.|++++|++.+++..+.. +.+...+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~   75 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAH   75 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            3456666677777777777777777777654       3456677777777777777777777777777653 2356667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      ..+..++...|++++|+..|++..+.
T Consensus        76 ~~lg~~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           76 FFLGQCQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77777777777777777777776653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.74  E-value=2.3e-07  Score=80.83  Aligned_cols=195  Identities=10%  Similarity=-0.056  Sum_probs=141.9

Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCC--------CC----cc--
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTL-------INGLCRTGHTIVALNLFEEMANGNGE--------IG----VV--  188 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~----~~--  188 (570)
                      .++..+|.+.|.++.... +-....|..+       ..++...++..+++..++......+.        .|    +.  
T Consensus        19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            469999999999999874 3356788888       57777777777887777776663210        00    00  


Q ss_pred             cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhH
Q 038914          189 CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN--VVTF  266 (570)
Q Consensus       189 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~  266 (570)
                      +..-......+...+...|++++|.++|+.+...+  |+......+...+.+.++|++|+..|+...... .|.  ...+
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~  174 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG  174 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence            00112345567788999999999999999888754  333366667778899999999999998665431 111  2367


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914          267 TVIMDELCKNGKMDGASRLLELMILRGVKPD--TSTYNTLIDGYCLTGKIDRARELFVSMESNG  328 (570)
Q Consensus       267 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  328 (570)
                      ..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7788899999999999999999885433243  3355667778889999999999999998874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.73  E-value=1.3e-07  Score=80.16  Aligned_cols=155  Identities=10%  Similarity=-0.083  Sum_probs=91.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCH
Q 038914          380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL----KY-ELNIVSYNCLIDGLCKHGRL  454 (570)
Q Consensus       380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~  454 (570)
                      ..|++++|.++++.+.. .......++..+...+...|++++|...+++....    +. +....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45666666664433332 12234455666666666777777777777665541    10 11234566667777777777


Q ss_pred             HHHHHHHHhhhhC----CCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 038914          455 EIAWELFSSLPRV----GLMA--DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL-EPN----FVIFNTLMLGFIRNNE  523 (570)
Q Consensus       455 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~  523 (570)
                      ++|...+++..+.    +..+  ....+..++.++...|++++|...+++.....- ..+    ..++..+..++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            7777777766542    1011  124466677777777888888887777654200 111    2234666777778888


Q ss_pred             HHHHHHHHHHHH
Q 038914          524 TSKVIELLHRMD  535 (570)
Q Consensus       524 ~~~a~~~~~~~~  535 (570)
                      +++|...+++..
T Consensus       163 ~~~A~~~~~~al  174 (203)
T 3gw4_A          163 LLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887776

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.73  E-value=5.2e-07  Score=69.28  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914          439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF  518 (570)
Q Consensus       439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  518 (570)
                      ..+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|..+++++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            445555555556666666666666555532 2234455556666666666666666666665531 23455555566666


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          519 IRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLV  554 (570)
Q Consensus       519 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  554 (570)
                      ...|++++|...++++.+.. +.+...+..+..++.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            66666666666666665432 223444444444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.72  E-value=5.5e-07  Score=73.36  Aligned_cols=128  Identities=13%  Similarity=0.050  Sum_probs=82.0

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC  449 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  449 (570)
                      .+..+...+...|+++.|...++...+.. +.+...+..+..++...|++++|...++++.... +.+...+..++.++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            34455555666666666666666665543 3355666667777777777777777777776664 455667777777777


Q ss_pred             hcCCHHHHHHHHHhhhhCCCCCChhhHHH--HHHHHHhcCChhHHHHHHHHHH
Q 038914          450 KHGRLEIAWELFSSLPRVGLMADVVTYNI--MIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      ..|++++|...++++.+.. +.+...+..  .+..+...|++++|+..+.+..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            7777777777777777642 223344433  3333666777777777776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.72  E-value=9.6e-08  Score=76.06  Aligned_cols=96  Identities=14%  Similarity=-0.036  Sum_probs=49.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038914          438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLG  517 (570)
Q Consensus       438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  517 (570)
                      ...+..+...+...|++++|...|+++.... +.+...|..++.+|...|++++|+..|++++... +.+...+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            3344445555555555555555555555432 2234455555555555555555555555555431 1234445555555


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 038914          518 FIRNNETSKVIELLHRMD  535 (570)
Q Consensus       518 ~~~~g~~~~a~~~~~~~~  535 (570)
                      +...|++++|...+++.+
T Consensus        99 ~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            555555555555555555

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.72  E-value=4.9e-07  Score=70.13  Aligned_cols=118  Identities=9%  Similarity=-0.038  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914          439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF  518 (570)
Q Consensus       439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  518 (570)
                      ..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..++
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            344445555555555555555555555431 2234455555555555666666666665555531 22344555555556


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcc
Q 038914          519 IRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEIS  559 (570)
Q Consensus       519 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  559 (570)
                      ...|++++|...+++..+.+ +.+...+..+..++.+.|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            66666666666666655432 22344555555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.71  E-value=1.4e-07  Score=78.04  Aligned_cols=124  Identities=7%  Similarity=0.026  Sum_probs=94.4

Q ss_pred             cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH-HH
Q 038914          126 SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG-LC  204 (570)
Q Consensus       126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  204 (570)
                      .+...|++++|+..+++.+... +.+..++..+..++...|++++|+..|+++.+.+       +.+...+..+..+ +.
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~   90 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYY   90 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence            3455678888988888887764 3356778888888888999999999999988764       4467778888888 77


Q ss_pred             hcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038914          205 KKGFV--DKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQG  258 (570)
Q Consensus       205 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  258 (570)
                      ..|++  ++|+..|+++...+ +.+...+..+..++...|++++|...++.+.+..
T Consensus        91 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           91 QASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             hcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            88888  89999998888763 3367778888888888899999999888888753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=8.4e-07  Score=68.07  Aligned_cols=115  Identities=14%  Similarity=0.120  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH
Q 038914          403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG  482 (570)
Q Consensus       403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  482 (570)
                      ...+..+...+...|++++|...++++.... +.+..++..++.++...|++++|...++++.+.. +.+..++..++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4556666777777788888888887777654 4566677777777888888888888888777642 3355677777888


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038914          483 LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIR  520 (570)
Q Consensus       483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  520 (570)
                      +...|++++|...++++.+.. +.+...+..+...+..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence            888888888888888877642 2345555555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.70  E-value=3.5e-07  Score=70.98  Aligned_cols=120  Identities=15%  Similarity=0.003  Sum_probs=85.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914          402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH  481 (570)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  481 (570)
                      +...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            34456666677777788888888888777654 4566777777778888888888888888777642 334567777778


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038914          482 GLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNET  524 (570)
Q Consensus       482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  524 (570)
                      ++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            8888888888888888877742 23566666676777666653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.70  E-value=2.9e-07  Score=71.78  Aligned_cols=117  Identities=5%  Similarity=-0.082  Sum_probs=64.4

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038914          438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLG  517 (570)
Q Consensus       438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  517 (570)
                      ...+..+...+...|++++|...|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            4445555556666666666666666655532 2244555566666666666666666666665531 2245555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038914          518 FIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNE  557 (570)
Q Consensus       518 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  557 (570)
                      +...|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            666666666666666665432 122344445555544433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.70  E-value=3.3e-07  Score=70.70  Aligned_cols=58  Identities=14%  Similarity=0.039  Sum_probs=26.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .+...+.+.|++++|+..|+++++.. |.+...|..+..+|...|++++|+..+++.++
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444444444444444444443 33344444444444444444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.69  E-value=3.9e-07  Score=71.03  Aligned_cols=117  Identities=8%  Similarity=-0.042  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914          402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH  481 (570)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  481 (570)
                      +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            44556666667777777777777777776554 4456667777777777777777777777776642 334566777777


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 038914          482 GLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNN  522 (570)
Q Consensus       482 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  522 (570)
                      ++...|++++|...++++.+.  .| +...+..+..++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence            777777777777777777663  23 3445555555555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.68  E-value=1.6e-07  Score=84.22  Aligned_cols=97  Identities=12%  Similarity=-0.020  Sum_probs=57.2

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914          263 VVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING  342 (570)
Q Consensus       263 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  342 (570)
                      ...+..+...+...|++++|...|++++... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3445555555666666666666666665542 2245555566666666666666666666665543 2345556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 038914          343 YCKTKDVEEGLNLYRKMLS  361 (570)
Q Consensus       343 ~~~~~~~~~A~~~~~~~~~  361 (570)
                      +...|++++|+..|++...
T Consensus        82 ~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666555

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.68  E-value=1.4e-05  Score=71.87  Aligned_cols=189  Identities=9%  Similarity=-0.029  Sum_probs=135.1

Q ss_pred             CCCh-hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038914           52 TITP-NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH----------YDTVLSLFKRLNSTGLFPDLYAYNILINCF  120 (570)
Q Consensus        52 ~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  120 (570)
                      .|.+ ++|+..++.++..+|  .+..+|+.-..++...+.          +++++.+++.++...+ -+...+..-...+
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL  118 (331)
T 3dss_A           42 AGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL  118 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            3455 489999999999999  888999987777766554          6899999999998742 2445555554455


Q ss_pred             HhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914          121 LQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEIGVVCKPDTVTYTTI  199 (570)
Q Consensus       121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  199 (570)
                      ...+     ...+++++.+++++.+.. +.|..+|+.-.-++...|. ++++++.++++.+.+       +.|..+|+..
T Consensus       119 ~~l~-----~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-------p~N~SAW~~R  185 (331)
T 3dss_A          119 SRLP-----EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYR  185 (331)
T ss_dssp             HHCS-----SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------SCCHHHHHHH
T ss_pred             hccC-----cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------CCCHHHHHHH
Confidence            4443     115899999999999985 3477888888888888888 589999999999976       5678888887


Q ss_pred             HHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 038914          200 IDGLCKK--------------GFVDKAKELFLKMKDENINPNAVTYTSLICGFCYA-----------NDWNEAKHLFIEM  254 (570)
Q Consensus       200 ~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~  254 (570)
                      ..++...              +.++++++.+.+..... +-|..+|+-+-..+...           +.++++++.++++
T Consensus       186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el  264 (331)
T 3dss_A          186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL  264 (331)
T ss_dssp             HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence            7776665              34677788887777653 33666666444444333           2345555555555


Q ss_pred             HHC
Q 038914          255 MDQ  257 (570)
Q Consensus       255 ~~~  257 (570)
                      .+.
T Consensus       265 le~  267 (331)
T 3dss_A          265 QEL  267 (331)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.67  E-value=1.7e-05  Score=71.37  Aligned_cols=182  Identities=12%  Similarity=0.018  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcC--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHH
Q 038914          349 VEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVH--QVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY-IVKAVEL  425 (570)
Q Consensus       349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~  425 (570)
                      +++++..++.+.....+ +..++..-...+...+  .+++++.+++.+.+.+ +.+...|+.-..++...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            34455555555543222 3344444444444444  2555555555555543 3345555555555555555 3555666


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc-----
Q 038914          426 FRTLRILKYELNIVSYNCLIDGLCKH--------------GRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND-----  486 (570)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  486 (570)
                      ++.+++.+ +-|..+|+.....+...              +.++++++.+...+... +-|...|+.+-..+...     
T Consensus       168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence            66555554 44555555544444333              33566666666666542 33445555444444433     


Q ss_pred             ------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhC
Q 038914          487 ------GQMDKAHGLFLDMEAKGLEPNFVIFNTLML-----GFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       487 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~  537 (570)
                            +.++++++.++++.+  +.|+. .|..+..     +....|..+++..++.++.+.
T Consensus       246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                  346778888888877  45653 2322221     122457777888888888754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.65  E-value=6.1e-07  Score=82.62  Aligned_cols=130  Identities=13%  Similarity=-0.048  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN---------------IVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                      ...+..+...+.+.|++++|...|+++.... +.+               ..+|..+..+|.+.|++++|+..++++++.
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445555566666666666666666666553 222               367777777888888888888888887775


Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 038914          468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKV-IELLHRMD  535 (570)
Q Consensus       468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~  535 (570)
                      . +.+...|..++.+|...|++++|+..|+++++.. +.+...+..+..++...|++++| ...+++|.
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 3355677778888888888888888888877742 23566777777777777777777 44556554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.65  E-value=1.6e-07  Score=74.24  Aligned_cols=111  Identities=9%  Similarity=-0.089  Sum_probs=83.8

Q ss_pred             HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhCCHHHHHH
Q 038914           60 CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVESRIMEAAA  138 (570)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~A~~  138 (570)
                      ..|+.++..+|  .+...+..++..+.+.|++++|+..|++++..  .|+ ...+..+-.++..       .|++++|+.
T Consensus         5 ~~l~~al~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~-------~g~~~~A~~   73 (142)
T 2xcb_A            5 GTLAMLRGLSE--DTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQS-------LGLYEQALQ   73 (142)
T ss_dssp             ----CCTTCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-------TTCHHHHHH
T ss_pred             hhHHHHHcCCH--HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH-------HhhHHHHHH
Confidence            45666666666  67778888999999999999999999999887  443 3334443334433       469999999


Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          139 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      .|++.+... +.+..++..+..++...|++++|+..|+.+.+..
T Consensus        74 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           74 SYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999998875 3366778889999999999999999999988754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.65  E-value=8.3e-07  Score=68.42  Aligned_cols=93  Identities=10%  Similarity=-0.103  Sum_probs=41.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc
Q 038914          407 TTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND  486 (570)
Q Consensus       407 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  486 (570)
                      ......+...|++++|+..|++..+.. +.+...|..+..++...|++++|...++++++.. +.+...|..++.++...
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence            333444444444444444444444433 3334444444444444444444444444444421 11233444444444444


Q ss_pred             CChhHHHHHHHHHHH
Q 038914          487 GQMDKAHGLFLDMEA  501 (570)
Q Consensus       487 g~~~~A~~~~~~~~~  501 (570)
                      |++++|...|+++.+
T Consensus        86 ~~~~~A~~~~~~al~  100 (126)
T 3upv_A           86 KEYASALETLDAART  100 (126)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHH
Confidence            444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.61  E-value=6.3e-07  Score=86.78  Aligned_cols=125  Identities=10%  Similarity=0.020  Sum_probs=97.6

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILIN  118 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~  118 (570)
                      ..+...|......|++++|+..|+++++.+|  .+..+|..++.++.+.|++++|++.|+++++.  .|+ ...+..+-.
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~   82 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA   82 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            3456678888999999999999999999998  78999999999999999999999999999998  443 334444443


Q ss_pred             HHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChhHHHHHHH
Q 038914          119 CFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING--LCRTGHTIVALNLFE  176 (570)
Q Consensus       119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  176 (570)
                      ++       ...|++++|+..|+++++.. +.+..++..+..+  +.+.|++++|++.++
T Consensus        83 ~~-------~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           83 SN-------MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HH-------HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HH-------HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            44       44579999999999999874 2245566666666  788899999999998

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.61  E-value=8.2e-08  Score=81.10  Aligned_cols=52  Identities=8%  Similarity=0.034  Sum_probs=33.5

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      ..|+++.|...++......+  .....+..++..+...|++++|+..|++++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   67 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF   67 (198)
T ss_dssp             ------CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34555566555554433333  44566788888899999999999999999876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.58  E-value=2.7e-06  Score=64.36  Aligned_cols=97  Identities=9%  Similarity=-0.086  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914          439 VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF  518 (570)
Q Consensus       439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  518 (570)
                      ..+..++..+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345555566666666666666666665532 2244556666666666666666666666666542 22455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHhC
Q 038914          519 IRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       519 ~~~g~~~~a~~~~~~~~~~  537 (570)
                      ...|++++|...+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            6667777777766666643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.2e-06  Score=84.42  Aligned_cols=201  Identities=12%  Similarity=-0.033  Sum_probs=130.3

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCH---------------HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHH
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPV---------------TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYAYN  114 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~  114 (570)
                      +.|++++|++.|..+++..|...+.               .++..++..|...|++++|.+++.++...... ++.....
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence            4679999999999999887732221               24788999999999999999999998764212 1221111


Q ss_pred             HHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 038914          115 ILINCFLQNGSSLCVESRIMEAAALFTKLRVF----GCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC  189 (570)
Q Consensus       115 ~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  189 (570)
                      .+...   .|..+...|++++|..++++....    +..+ -..++..++..+...|++++|..+++++.......+. .
T Consensus        96 ~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~  171 (434)
T 4b4t_Q           96 VLKTL---IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD-K  171 (434)
T ss_dssp             HHHHH---HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-S
T ss_pred             HHHHH---HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-c
Confidence            11111   112233457899999999887653    1111 1345777888899999999999999887654211000 1


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE----NINPN--AVTYTSLICGFCYANDWNEAKHLFIEMM  255 (570)
Q Consensus       190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  255 (570)
                      +....++..++..|...|++++|..++++....    +.++.  ...+..+...+...|++++|...|.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            122557788888888888888888888776542    11111  2344555556666777777776666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.55  E-value=1.4e-06  Score=67.08  Aligned_cols=98  Identities=10%  Similarity=-0.031  Sum_probs=85.8

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038914          438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLG  517 (570)
Q Consensus       438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  517 (570)
                      ...+..+...+...|++++|...|++.++.. +.+...|..++.++...|++++|+..++++++.. +.+...|..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            4567778889999999999999999999863 4467889999999999999999999999999852 3357889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 038914          518 FIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       518 ~~~~g~~~~a~~~~~~~~~~  537 (570)
                      +...|++++|...+++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            99999999999999999854

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.54  E-value=5.9e-07  Score=70.99  Aligned_cols=95  Identities=16%  Similarity=0.046  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHH
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLC  484 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  484 (570)
                      .+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+++.+.. +.+...+..++.++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            33344445555555555555555555543 3445555555555555555555555555555532 223344555555555


Q ss_pred             hcCChhHHHHHHHHHHH
Q 038914          485 NDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       485 ~~g~~~~A~~~~~~~~~  501 (570)
                      ..|++++|...|+++++
T Consensus        98 ~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.53  E-value=4.6e-06  Score=63.08  Aligned_cols=97  Identities=14%  Similarity=0.010  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914          404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGL  483 (570)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  483 (570)
                      ..+..+...+...|++++|...++.+.... +.+...+..+..++...|++++|...++++.+.. +.+...+..++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            455566667777788888888887777654 4566777777777777888888888888777642 33456677777788


Q ss_pred             HhcCChhHHHHHHHHHHHC
Q 038914          484 CNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       484 ~~~g~~~~A~~~~~~~~~~  502 (570)
                      ...|++++|...+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            8888888888888877764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=4.4e-06  Score=66.36  Aligned_cols=98  Identities=12%  Similarity=-0.049  Sum_probs=63.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038914          437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD----VVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFN  512 (570)
Q Consensus       437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  512 (570)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..++.++...|++++|+..++++.+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4455666666666777777777777766663  344    4556666677777777777777777766641 22455666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          513 TLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       513 ~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      .+..++...|++++|...+++....
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            6667777777777777777777654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.50  E-value=2.3e-06  Score=72.14  Aligned_cols=127  Identities=14%  Similarity=-0.002  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 038914          406 YTTFIDGLCKNGYIVKAVELFRTLRILKYELN----------------IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL  469 (570)
Q Consensus       406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  469 (570)
                      +..+...+...|++++|...|+++.... +.+                ..++..+..+|...|++++|...++++++.. 
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            4444455555566666666666555432 112                2556666677777777777777777776642 


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 038914          470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVI-ELLHRMD  535 (570)
Q Consensus       470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~  535 (570)
                      +.+...+..++.++...|++++|...|+++++.. +.+...+..+..++...++.+++. ..+..|.
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345666677777777777777777777776641 224555666666666665555554 4444444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.50  E-value=4.3e-06  Score=65.42  Aligned_cols=97  Identities=10%  Similarity=-0.116  Sum_probs=51.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038914          437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLML  516 (570)
Q Consensus       437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  516 (570)
                      +...+..+...+...|++++|...|++..+.. +.+...|..++.++...|++++|...++++++.. +.+...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            34445555555555555555555555555432 2234455555555555555555555555555531 223445555555


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 038914          517 GFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       517 ~~~~~g~~~~a~~~~~~~~  535 (570)
                      ++...|++++|...+++..
T Consensus        86 ~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            5555566666655555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.49  E-value=1.8e-06  Score=67.60  Aligned_cols=99  Identities=11%  Similarity=-0.094  Sum_probs=72.9

Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHH
Q 038914          401 ANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMI  480 (570)
Q Consensus       401 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  480 (570)
                      .+...+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...++++.+.. +.+...+..++
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            455667777777777788888888887777665 4566777777777888888888888888777743 33456777777


Q ss_pred             HHHHhcCChhHHHHHHHHHHH
Q 038914          481 HGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .++...|++++|...|+++.+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            788888888888888877765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.48  E-value=2.5e-06  Score=69.36  Aligned_cols=99  Identities=10%  Similarity=-0.038  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHH
Q 038914          402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIH  481 (570)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  481 (570)
                      +...+..+...+...|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|+++++.. +.+...|..++.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            44566667777777788888888887777765 4566777777777777888888888887777742 334567777777


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 038914          482 GLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       482 ~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      ++...|++++|...|+++++.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            777778888888877777763

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.48  E-value=2.3e-06  Score=64.02  Aligned_cols=99  Identities=11%  Similarity=-0.022  Sum_probs=67.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 038914          437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP--NFVIFNTL  514 (570)
Q Consensus       437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l  514 (570)
                      +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.  +...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            44556666667777777777777777776642 3345666777777777777777777777777642 22  46667777


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHhC
Q 038914          515 MLGFIRN-NETSKVIELLHRMDMR  537 (570)
Q Consensus       515 ~~~~~~~-g~~~~a~~~~~~~~~~  537 (570)
                      ..++... |++++|.+.+++....
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhc
Confidence            7777777 7777777777777754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.47  E-value=1.5e-06  Score=67.33  Aligned_cols=95  Identities=8%  Similarity=0.098  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 038914          441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGL--EPN----FVIFNTL  514 (570)
Q Consensus       441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l  514 (570)
                      +..++..+...|++++|...|+++.+.. +.+...+..++.++...|++++|..+++++.....  .++    ..++..+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            3334444444444444444444444321 22333444444444444444444444444443210  011    3344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 038914          515 MLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       515 ~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      ..++...|++++|...++++.+
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            4445555555555555555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.47  E-value=2.4e-06  Score=63.97  Aligned_cols=98  Identities=11%  Similarity=-0.001  Sum_probs=58.7

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINP--NAV  229 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~  229 (570)
                      ..++..+...+...|++++|+..|+++.+..       +.+...+..+..++...|++++|.+.|++..+.. +.  +..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~   77 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKD   77 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHH
Confidence            4455556666666666666666666666543       3345556666666666666666666666666542 22  355


Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 038914          230 TYTSLICGFCYA-NDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       230 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~  257 (570)
                      .+..+..++... |++++|.+.++.+...
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            556666666666 6666666666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.47  E-value=1.7e-06  Score=67.00  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCC--CCC----hhhH
Q 038914          403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGL--MAD----VVTY  476 (570)
Q Consensus       403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~  476 (570)
                      ...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...++++.+...  .++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            4567788889999999999999999998876 56788899999999999999999999999987421  111    6678


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038914          477 NIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGF  518 (570)
Q Consensus       477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  518 (570)
                      ..++.++...|++++|...|+++.+.  .|+......+..+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  122 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence            88999999999999999999999984  56766665554443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.47  E-value=4.2e-06  Score=67.94  Aligned_cols=95  Identities=12%  Similarity=-0.003  Sum_probs=48.3

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038914          370 TYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLC  449 (570)
Q Consensus       370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  449 (570)
                      .+..+...+...|++++|+..|+...+.. +.+...+..+..+|...|++++|+..++++.+.. +.+...|..+..+|.
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34444455555555555555555554432 2244445555555555555555555555555443 334445555555555


Q ss_pred             hcCCHHHHHHHHHhhhh
Q 038914          450 KHGRLEIAWELFSSLPR  466 (570)
Q Consensus       450 ~~g~~~~A~~~~~~~~~  466 (570)
                      ..|++++|...|+++++
T Consensus        91 ~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            55555555555555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.47  E-value=3.6e-07  Score=74.07  Aligned_cols=144  Identities=9%  Similarity=-0.024  Sum_probs=91.1

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC-C---
Q 038914           75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE-P---  150 (570)
Q Consensus        75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~---  150 (570)
                      ..++..++..+...|++++|+..+++++...  +..........++...|..+...|++++|...+++....... .   
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            3467788888999999999999999987652  211111222233444445556667888888888887653111 0   


Q ss_pred             -CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          151 -DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD  221 (570)
Q Consensus       151 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  221 (570)
                       ...++..+..++...|++++|+..+++........+. .......+..+..++...|++++|.+.+++..+
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             1345667778888888898888888887653210000 011134566667777777777777777766554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.46  E-value=1.9e-07  Score=90.01  Aligned_cols=158  Identities=11%  Similarity=-0.031  Sum_probs=116.4

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh---------hHHHHHHHHHh
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY---------AYNILINCFLQ  122 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~  122 (570)
                      .+++++|+..|+......|  .....|..++..+.+.|++++|+..|++++...  |+..         .-.....++..
T Consensus       247 l~~~~~A~~~~~~~~~~~~--~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKL--EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHH
Confidence            3456677777777776666  677889999999999999999999999999863  3320         01111233333


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDG  202 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  202 (570)
                      .|..+.+.|++++|+..+++++... +.+..+|..+..+|...|++++|+..|+++.+.+       +.+...+..+..+
T Consensus       323 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~  394 (457)
T 1kt0_A          323 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence            3444555679999999999999874 3367789999999999999999999999999875       4557788889999


Q ss_pred             HHhcCCHHHHHH-HHHHHHh
Q 038914          203 LCKKGFVDKAKE-LFLKMKD  221 (570)
Q Consensus       203 ~~~~g~~~~a~~-~~~~~~~  221 (570)
                      +.+.++.+++.. .+..|..
T Consensus       395 ~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          395 QKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            998888887764 4555543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.44  E-value=1.9e-06  Score=65.73  Aligned_cols=92  Identities=9%  Similarity=-0.024  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 038914          441 YNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFI  519 (570)
Q Consensus       441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~  519 (570)
                      +..+...+.+.|++++|...|+++++.. +.+...|..++.++...|++++|+..|+++++.  .| +...+..+..++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            3344445555566666666665555531 223455555555555666666666666655553  23 3445555555556


Q ss_pred             hcCCHHHHHHHHHHHH
Q 038914          520 RNNETSKVIELLHRMD  535 (570)
Q Consensus       520 ~~g~~~~a~~~~~~~~  535 (570)
                      ..|++++|+..+++.+
T Consensus        97 ~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           97 NEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            6666666666666555

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.42  E-value=2.3e-06  Score=65.16  Aligned_cols=96  Identities=7%  Similarity=-0.081  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038914          154 TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTS  233 (570)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  233 (570)
                      .+..+...+.+.|++++|+..|+++.+.+       +.+...|..+..++...|++++|+..|++..+.+. .+...+..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~   90 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAA   90 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence            45556677777888888888888887764       44677777788888888888888888887777632 25667777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          234 LICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       234 l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      +..++...|++++|+..+++.++.
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           91 LAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            777777888888888888777664

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.38  E-value=6.7e-06  Score=79.05  Aligned_cols=193  Identities=10%  Similarity=-0.094  Sum_probs=120.0

Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCC
Q 038914          128 CVESRIMEAAALFTKLRVFGCEPDV----------------FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKP  191 (570)
Q Consensus       128 ~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  191 (570)
                      ...|++++|++.|.++++.......                .++..++..|...|++++|.+.+..+....+.     .+
T Consensus        15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~-----~~   89 (434)
T 4b4t_Q           15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ-----FA   89 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT-----SC
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----cc
Confidence            3457999999999999876322111                13677888999999999999999887764311     11


Q ss_pred             Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 038914          192 DT----VTYTTIIDGLCKKGFVDKAKELFLKMKDE----NINP-NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQ--  260 (570)
Q Consensus       192 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--  260 (570)
                      +.    .+.+.+...+...|+.++|.++++.....    +..+ -..++..+...|...|++++|..+++++...-..  
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            11    12333444455568888888888776532    2221 2456677778888888888888888776543111  


Q ss_pred             ---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          261 ---PNVVTFTVIMDELCKNGKMDGASRLLELMILRG--VKPD----TSTYNTLIDGYCLTGKIDRARELFVSME  325 (570)
Q Consensus       261 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  325 (570)
                         ....++..++..|...|++++|..++++.....  +..+    ...+..++..+...+++++|...|.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence               113456667777777777777777777665421  1111    1234444555556666766666665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=1.2e-05  Score=63.82  Aligned_cols=98  Identities=15%  Similarity=-0.075  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHH
Q 038914          402 NTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELN----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYN  477 (570)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  477 (570)
                      +...+..+...+...|++++|...|+++.+..  |+    ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            44556666666777777777777777776543  33    5666667777777777777777777776642 23456667


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          478 IMIHGLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       478 ~l~~~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      .++.++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            7777777777777777777777764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.34  E-value=3.5e-06  Score=68.14  Aligned_cols=133  Identities=12%  Similarity=-0.001  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCC-Ch
Q 038914          404 YIYTTFIDGLCKNGYIVKAVELFRTLRILKYE-LN----IVSYNCLIDGLCKHGRLEIAWELFSSLPRVG----LMA-DV  473 (570)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~  473 (570)
                      .++..+...+...|++++|...+++....... .+    ..++..+...+...|++++|...+++..+..    ..+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34556666677777777777777766543100 11    1356677777888888888888888766521    011 13


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAK----GLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      .++..++.++...|++++|...+++..+.    +..+ ...++..+...+...|++++|...+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            45677888888888999888888887653    1111 134567777888888999999998888763

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.32  E-value=1.4e-05  Score=61.70  Aligned_cols=91  Identities=15%  Similarity=0.117  Sum_probs=50.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 038914          443 CLIDGLCKHGRLEIAWELFSSLPRVGLMADV---VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN----FVIFNTLM  515 (570)
Q Consensus       443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~  515 (570)
                      .+...+...|++++|...|+.+.+.. +.+.   ..+..++.++...|++++|...++++.+.  .|+    ...+..+.
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la   83 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence            34445555666666666666655532 1122   24555566666666666666666666553  222    44455556


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 038914          516 LGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       516 ~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      .++...|++++|...++++.+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666666664

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.31  E-value=1.6e-06  Score=83.85  Aligned_cols=124  Identities=9%  Similarity=-0.062  Sum_probs=94.6

Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI  199 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  199 (570)
                      +...|..+...|++++|+..|++.++.. +.+..++..+..++.+.|++++|+..++++.+.+       +.+...+..+
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~l   80 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRR   80 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHH
Confidence            3445667778889999999999998874 3356788889999999999999999999999875       4567888899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038914          200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG--FCYANDWNEAKHLFI  252 (570)
Q Consensus       200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  252 (570)
                      ..+|...|++++|++.|++..+... .+...+..+..+  +...|++++|++.++
T Consensus        81 g~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           81 AASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999887632 244555555555  778888999988887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.30  E-value=3.3e-05  Score=59.49  Aligned_cols=93  Identities=14%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC---hhhHHHHHH
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILKYELNI---VSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD---VVTYNIMIH  481 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~  481 (570)
                      .+...+...|++++|...|+.+.+.. +.+.   ..+..+..++...|++++|...|+++.+.. +.+   ...+..++.
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence            44556667777888887777777654 2333   466667777778888888888888777642 222   455677777


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 038914          482 GLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       482 ~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      ++...|++++|...|+++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            788888888888888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.27  E-value=7.1e-06  Score=66.42  Aligned_cols=63  Identities=16%  Similarity=0.016  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ..|..++.+|...|++++|+..++++++.. +.+...|..+..++...|++++|...+++.+..
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            456666667777777777777777766642 234566666677777777777777777776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.27  E-value=9.9e-06  Score=65.54  Aligned_cols=101  Identities=15%  Similarity=0.021  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRIL--------K---------YELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                      .+......+.+.|++++|+..|.+....        .         .+.+...|..+..+|...|++++|+..++++++.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3444445555556666665555555443        0         0233467777888888888888888888888875


Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 038914          468 GLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNF  508 (570)
Q Consensus       468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  508 (570)
                      . +.+...|..++.+|...|++++|...|+++++.  .|+.
T Consensus        93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~  130 (162)
T 3rkv_A           93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA  130 (162)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred             C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence            3 335677888888888888888888888888874  4553

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.27  E-value=2.5e-06  Score=64.62  Aligned_cols=86  Identities=12%  Similarity=-0.014  Sum_probs=52.6

Q ss_pred             cCCHHHHHHHHHhhhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038914          451 HGRLEIAWELFSSLPRVG--LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVI  528 (570)
Q Consensus       451 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  528 (570)
                      .|++++|+..|+++++.+  -+.+...+..++.+|...|++++|+..|+++++.. +.+..++..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            466666777777666632  12234556667777777777777777777776642 224566666677777777777777


Q ss_pred             HHHHHHHhC
Q 038914          529 ELLHRMDMR  537 (570)
Q Consensus       529 ~~~~~~~~~  537 (570)
                      ..+++.+..
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777776643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.26  E-value=3e-05  Score=60.78  Aligned_cols=74  Identities=8%  Similarity=-0.001  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 038914          475 TYNIMIHGLCNDGQMDKAHGLFLDMEAK-----GLEPN-FVIF----NTLMLGFIRNNETSKVIELLHRMDM-----RNV  539 (570)
Q Consensus       475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~  539 (570)
                      .|..+..++...|++++|+..+++.++.     .+.|+ ...|    .....++...|++++|+..|++.++     .++
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            6777777777777777777777777662     11554 3466    6777777777788888777777763     344


Q ss_pred             CCCHHHHHH
Q 038914          540 MPDASTLSI  548 (570)
Q Consensus       540 ~p~~~~~~~  548 (570)
                      .+.......
T Consensus       139 ~~~~~~~~~  147 (159)
T 2hr2_A          139 TPGKERMME  147 (159)
T ss_dssp             CTTHHHHHH
T ss_pred             HHHHHHHHH
Confidence            454444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.23  E-value=6.6e-05  Score=74.03  Aligned_cols=173  Identities=10%  Similarity=-0.012  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-
Q 038914          384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGY----------IVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-  452 (570)
Q Consensus       384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  452 (570)
                      .++|+..++.+.... +.+..+|+.-..++...|+          +++++..++.+.+.. +-+..+|..-..++.+.| 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            345666666666543 3344555555555555555          777888888877765 567777777777777777 


Q ss_pred             -CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 038914          453 -RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG-QMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRN---------  521 (570)
Q Consensus       453 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------  521 (570)
                       ++++++..++++.+.. +-+..+|+....++...| .++++++.+.++++.. +-|..+|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence             6688888888887753 346677777777777777 7788888888877753 23667777666665552         


Q ss_pred             -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccc
Q 038914          522 -----NETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLN  561 (570)
Q Consensus       522 -----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  561 (570)
                           +.++++++.+++++... +-|...|....-.+.+.|+..+
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                 55788999998888653 4457788888888888887555

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.22  E-value=1.2e-05  Score=60.08  Aligned_cols=94  Identities=9%  Similarity=-0.021  Sum_probs=71.4

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 038914          472 DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-------AS  544 (570)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~  544 (570)
                      +...+..++..+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..+++.++.  .|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence            44567778888888888888888888887752 336677788888888888888888888888854  344       55


Q ss_pred             HHHHHHHHHHccCcccccchhhhh
Q 038914          545 TLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       545 ~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                      .+..+..++...|+.++|+..+++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHH
Confidence            677777788888888888877664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.22  E-value=1.6e-05  Score=74.03  Aligned_cols=87  Identities=9%  Similarity=-0.052  Sum_probs=44.8

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 038914          438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLML  516 (570)
Q Consensus       438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  516 (570)
                      ..+|..+..+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++.+.  .| +...+..+..
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~  349 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            3445555555555566666666655555532 223445555555555556666666555555553  22 3444444444


Q ss_pred             HHHhcCCHHHH
Q 038914          517 GFIRNNETSKV  527 (570)
Q Consensus       517 ~~~~~g~~~~a  527 (570)
                      ++...++.+++
T Consensus       350 ~~~~~~~~~~a  360 (370)
T 1ihg_A          350 VKQKIKAQKDK  360 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.21  E-value=2.5e-06  Score=64.62  Aligned_cols=86  Identities=16%  Similarity=0.036  Sum_probs=55.4

Q ss_pred             hCCHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcC
Q 038914          130 ESRIMEAAALFTKLRVFG--CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKG  207 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  207 (570)
                      .|++++|+..|++.++.+  .+.+..++..+..++...|++++|+..|+++.+.+       +.+...+..+..++...|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG   75 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence            357777777777777653  12234566667777777777777777777777654       344666777777777777


Q ss_pred             CHHHHHHHHHHHHhC
Q 038914          208 FVDKAKELFLKMKDE  222 (570)
Q Consensus       208 ~~~~a~~~~~~~~~~  222 (570)
                      ++++|++.|++....
T Consensus        76 ~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           76 RYEQGVELLLKIIAE   90 (117)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            777777777776654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.21  E-value=1.9e-05  Score=76.11  Aligned_cols=95  Identities=13%  Similarity=-0.005  Sum_probs=55.4

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 038914          438 IVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLML  516 (570)
Q Consensus       438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  516 (570)
                      ..+|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++.  .| +...+..+..
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~  393 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM  393 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            3556666666666777777777776666642 234556666666666777777777777666663  33 3345556666


Q ss_pred             HHHhcCCHHHHHH-HHHHHH
Q 038914          517 GFIRNNETSKVIE-LLHRMD  535 (570)
Q Consensus       517 ~~~~~g~~~~a~~-~~~~~~  535 (570)
                      ++.+.|+++++.+ .+++|.
T Consensus       394 ~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          394 CQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            6666666655542 344443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.18  E-value=1.1e-05  Score=75.06  Aligned_cols=92  Identities=9%  Similarity=-0.050  Sum_probs=77.0

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038914          472 DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVD  551 (570)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  551 (570)
                      +..+|..++.+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..++++.+.. +.+...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            45788999999999999999999999999852 3367889999999999999999999999999753 335778888888


Q ss_pred             HHHccCcccccchh
Q 038914          552 LLVKNEISLNSIPQ  565 (570)
Q Consensus       552 ~~~~~g~~~~a~~~  565 (570)
                      ++...++.+++.+.
T Consensus       350 ~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          350 VKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887766544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.14  E-value=3.8e-05  Score=60.22  Aligned_cols=96  Identities=13%  Similarity=-0.034  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------Ch-----hhHHHHHHHHHhcCCHHHHHHHHHhhhhC-----CC
Q 038914          406 YTTFIDGLCKNGYIVKAVELFRTLRILKYEL------NI-----VSYNCLIDGLCKHGRLEIAWELFSSLPRV-----GL  469 (570)
Q Consensus       406 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~  469 (570)
                      +......+.+.|++++|+..|++.++.....      +.     ..|..+..++.+.|++++|+..+++.++.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            4445556667777777777777776653110      22     37888888899999999999999888873     11


Q ss_pred             CCC-hhhH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          470 MAD-VVTY----NIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       470 ~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .|+ ...|    ...+.++...|++++|+..|++.++
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            554 4678    8899999999999999999999876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.13  E-value=3.7e-06  Score=80.72  Aligned_cols=140  Identities=9%  Similarity=-0.081  Sum_probs=94.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc-----CC-CCC-cchH
Q 038914           83 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF-----GC-EPD-VFTY  155 (570)
Q Consensus        83 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~  155 (570)
                      ..+..+|++++|+.++++++......-......++..+..++..|..+|++++|..++++.++.     |. .|+ ..++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3466899999999999998765222111111223333444445566678999999999998753     21 223 3468


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          156 NTLINGLCRTGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      +.|..+|...|++++|+.+++++...... .|...+....+...+..++...+.+++|+.+|..+.+.
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999998753210 11112223445667777888888889999888888653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.10  E-value=0.00011  Score=57.26  Aligned_cols=111  Identities=9%  Similarity=-0.058  Sum_probs=74.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHH
Q 038914          417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKA  492 (570)
Q Consensus       417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  492 (570)
                      +++++|...|++..+.+ .+...    +...|...+..++|.+.|++..+.|   +...+..|...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            35667777777776665 23322    5556666666777777777776643   55666667777766    6777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038914          493 HGLFLDMEAKGLEPNFVIFNTLMLGFIR----NNETSKVIELLHRMDMRN  538 (570)
Q Consensus       493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  538 (570)
                      ..+|++..+.|   +...+..|...|..    .+++++|..++++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77777777653   55666667777776    677777777777777665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.08  E-value=0.00012  Score=57.03  Aligned_cols=112  Identities=13%  Similarity=0.019  Sum_probs=82.1

Q ss_pred             hCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh----
Q 038914          130 ESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK----  205 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  205 (570)
                      .+++++|+.+|++..+.|   +..+.  |...|...+.+++|+.+|++..+.+         +...+..|...|..    
T Consensus         8 ~~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~   73 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYV   73 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSS
T ss_pred             ccCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHcCCCC
Confidence            357788888888888765   33333  6666666677788888888887754         56777777777777    


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 038914          206 KGFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQG  258 (570)
Q Consensus       206 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  258 (570)
                      .+++++|.+.|++..+.|   +...+..|...|..    .+++++|..+|++..+.|
T Consensus        74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            778888888888877764   56667777777777    677788888877777765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.06  E-value=1.2e-05  Score=74.08  Aligned_cols=128  Identities=14%  Similarity=-0.036  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHhh
Q 038914          403 TYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIV------------------SYNCLIDGLCKHGRLEIAWELFSSL  464 (570)
Q Consensus       403 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~  464 (570)
                      ...+..+...+.+.|++++|...|+++....  |+..                  .|..+..+|.+.|++++|+..++++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556677777888899999999999988763  3332                  5556666666666666666666666


Q ss_pred             hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 038914          465 PRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPN-FVIFNTLMLG-FIRNNETSKVIELLHRMD  535 (570)
Q Consensus       465 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~  535 (570)
                      ++.. +.+...|..++.+|...|++++|...|+++++.  .|+ ...+..+... ....+..+++...+++|.
T Consensus       257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l  326 (338)
T 2if4_A          257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIF  326 (338)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6532 224456666666666666666666666666552  332 3333333333 223344555666666665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.04  E-value=1.2e-05  Score=73.90  Aligned_cols=146  Identities=10%  Similarity=0.034  Sum_probs=59.9

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchH
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTY  155 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  155 (570)
                      ..+..++..+.+.|++++|+..|++++..  .|+...       +..       .+++.++...+.          ..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~-------~~~~~~~~~~l~----------~~~~  233 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQL-------YGKYQDMALAVK----------NPCH  233 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTC-------CHHHHHHHHHHH----------THHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhh-------cccHHHHHHHHH----------HHHH
Confidence            44566666777777777777777777665  333221       000       123333322111          1245


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 038914          156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD-ENINPNAVTYTSL  234 (570)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l  234 (570)
                      ..+..++.+.|++++|+..++++++.+       +.+...|..+..+|...|++++|+..|+++.. .  +-+...+..+
T Consensus       234 ~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L  304 (338)
T 2if4_A          234 LNIAACLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRREL  304 (338)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence            555555666666666666666665543       23455556666666666666666666655421 1  0122333333


Q ss_pred             HHH-HHhcCCHHHHHHHHHHHHH
Q 038914          235 ICG-FCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       235 ~~~-~~~~~~~~~a~~~~~~~~~  256 (570)
                      ... ....+..+.+..+|..+..
T Consensus       305 ~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          305 RALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhC
Confidence            333 2233445555555555554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.02  E-value=1.6e-05  Score=76.43  Aligned_cols=130  Identities=9%  Similarity=-0.073  Sum_probs=88.5

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHH
Q 038914          162 LCRTGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-----N--INPNAVTYTS  233 (570)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~  233 (570)
                      +...|++++|+.++++.+..... +|...+....+++.|+.+|...|++++|+.++++.+..     |  .+....+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55789999999999998865322 22212223567899999999999999999998887642     2  2223456778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          234 LICGFCYANDWNEAKHLFIEMMDQ-----GVQ-P-NVVTFTVIMDELCKNGKMDGASRLLELMIL  291 (570)
Q Consensus       234 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  291 (570)
                      |...|...|++++|+.++++....     |.. | ...+...+..++...+.+++|+.+|..+.+
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888776542     221 1 223344555566666777777777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.02  E-value=0.00057  Score=67.34  Aligned_cols=173  Identities=11%  Similarity=-0.031  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCC----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-
Q 038914          349 VEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQ----------VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNG-  417 (570)
Q Consensus       349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  417 (570)
                      .++|++.+++++..+.. +..+|..-...+...++          +++++..++.+.+.. +.+..+|..-..++.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            35667777777765322 33445544445555555          788888888888765 567778888888888888 


Q ss_pred             -CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhc---------
Q 038914          418 -YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHG-RLEIAWELFSSLPRVGLMADVVTYNIMIHGLCND---------  486 (570)
Q Consensus       418 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  486 (570)
                       ++++++..++++.+.+ +-+..+|+.-..++...| .++++++.++++++.. +-|...|+....++...         
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence             6699999999998877 667888888888888888 8899999999988863 44667888877776653         


Q ss_pred             -----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038914          487 -----GQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSK  526 (570)
Q Consensus       487 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  526 (570)
                           +.++++++++.+++... +-|...|..+...+.+.+++++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                 55789999999988852 3367788888777777766443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.00  E-value=7.2e-06  Score=64.11  Aligned_cols=102  Identities=12%  Similarity=0.054  Sum_probs=76.4

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 038914           53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY----------DTVLSLFKRLNSTGLFPD-LYAYNILINCFL  121 (570)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~  121 (570)
                      +.+++|++.++.+++.+|  .+..+|+.++.++...+++          ++|+..|+++++.  .|+ ...+..+-.+|.
T Consensus        16 ~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence            468899999999999999  8999999999999998875          5999999999998  454 344555555554


Q ss_pred             hcCC----cchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 038914          122 QNGS----SLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLIN  160 (570)
Q Consensus       122 ~~~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  160 (570)
                      ..|.    .....|++++|+..|++.++.  .|+...|...+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            4320    011125899999999999987  566655544444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.92  E-value=2.1e-05  Score=61.54  Aligned_cols=95  Identities=8%  Similarity=-0.058  Sum_probs=59.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHhhhhCCCCC-ChhhHHHHHHHH
Q 038914          415 KNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRL----------EIAWELFSSLPRVGLMA-DVVTYNIMIHGL  483 (570)
Q Consensus       415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~  483 (570)
                      +.+.+++|...++...+.. +.+...|..+..++...+++          ++|+..|++.++.  .| +..+|..++.+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence            4455666677777666665 55666666666666665543          4777777777663  34 345666777777


Q ss_pred             HhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038914          484 CNDG-----------QMDKAHGLFLDMEAKGLEPNFVIFNTL  514 (570)
Q Consensus       484 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l  514 (570)
                      ...|           ++++|++.|+++++  +.|+...|...
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~a  130 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKS  130 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            6553           67777777777777  45665554433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.88  E-value=6.4e-05  Score=56.46  Aligned_cols=80  Identities=13%  Similarity=0.023  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchhhCCHH
Q 038914           56 NDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNGSSLCVESRIM  134 (570)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~  134 (570)
                      +.|+..|+.+++.+|  .+...+..++.++...|++++|+..|++++...  |+ ...+..+-.++       ...|+++
T Consensus         2 ~~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~-------~~~g~~~   70 (115)
T 2kat_A            2 QAITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTL-------QGQGDRA   70 (115)
T ss_dssp             CCHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH-------HHHTCHH
T ss_pred             hHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH-------HHcCCHH
Confidence            468899999999998  788999999999999999999999999999873  43 33343333333       4457999


Q ss_pred             HHHHHHHHHHhc
Q 038914          135 EAAALFTKLRVF  146 (570)
Q Consensus       135 ~A~~~~~~~~~~  146 (570)
                      +|...|++.+..
T Consensus        71 ~A~~~~~~al~~   82 (115)
T 2kat_A           71 GARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.81  E-value=9.8e-05  Score=54.87  Aligned_cols=61  Identities=16%  Similarity=0.074  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      .+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|+..++++++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33444444444444444444444444421 22334444444444444444444444444444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.78  E-value=0.00031  Score=49.79  Aligned_cols=80  Identities=11%  Similarity=0.090  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL  553 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  553 (570)
                      ..+..++..+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            344555555555555556655555555531 2234455555555556666666666666555432 22344444444444


Q ss_pred             Hc
Q 038914          554 VK  555 (570)
Q Consensus       554 ~~  555 (570)
                      .+
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            33

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.74  E-value=0.00032  Score=49.72  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI  519 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  519 (570)
                      .+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..++.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            34444445555555555555555554431 2233444555555555555555555555554431 123344444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.71  E-value=0.00031  Score=52.60  Aligned_cols=79  Identities=13%  Similarity=0.025  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038914          170 VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKH  249 (570)
Q Consensus       170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  249 (570)
                      .|+..|+++.+.+       +.+...+..+..++...|++++|+..|++..... +.+...|..+..++...|++++|..
T Consensus         3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            4556666666543       3445666666666667777777777776666543 2245566666666666666666666


Q ss_pred             HHHHHHH
Q 038914          250 LFIEMMD  256 (570)
Q Consensus       250 ~~~~~~~  256 (570)
                      .|++...
T Consensus        75 ~~~~al~   81 (115)
T 2kat_A           75 AWESGLA   81 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.63  E-value=0.00023  Score=51.73  Aligned_cols=63  Identities=19%  Similarity=0.073  Sum_probs=29.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          437 NIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDME  500 (570)
Q Consensus       437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  500 (570)
                      +...+..+..+|...|++++|...|+++++.. +.+...|..++.+|...|++++|...|++.+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444445555555555555555555554431 1223444445555555555555555554444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.48  E-value=0.0081  Score=51.92  Aligned_cols=90  Identities=11%  Similarity=0.122  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHHHhCCCCCCcccCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          168 TIVALNLFEEMANGNGEIGVVCKPD---TVTYTTIIDGLCKK-----GFVDKAKELFLKMKDENINPNAVTYTSLICGFC  239 (570)
Q Consensus       168 ~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  239 (570)
                      ...|..+++++.+.+        |+   ...|..+...|.+.     |+.++|.+.|++.+..+..-+..++......++
T Consensus       179 l~~A~a~lerAleLD--------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          179 VHAAVMMLERACDLW--------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            467888999999865        44   56899999999994     999999999999998744334788888888888


Q ss_pred             hc-CCHHHHHHHHHHHHHCCCC--CChhh
Q 038914          240 YA-NDWNEAKHLFIEMMDQGVQ--PNVVT  265 (570)
Q Consensus       240 ~~-~~~~~a~~~~~~~~~~~~~--~~~~~  265 (570)
                      .. |+.+++.+.+++.+.....  |+...
T Consensus       251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~l  279 (301)
T 3u64_A          251 IPLNNRAGFDEALDRALAIDPESVPHNKL  279 (301)
T ss_dssp             TTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred             HhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence            85 9999999999999997655  54433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.47  E-value=0.0005  Score=49.87  Aligned_cols=65  Identities=22%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      +..++..+..++.+.|++++|+..|+++.+.+       +.+...|..+..+|...|++++|++.|++....
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56678888888999999999999999998865       445778888899999999999999998887753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.40  E-value=0.004  Score=56.28  Aligned_cols=74  Identities=14%  Similarity=0.023  Sum_probs=48.9

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914          470 MADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLS  547 (570)
Q Consensus       470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  547 (570)
                      +.+..+|..+...+...|++++|...+++++..  .|+...|..+...+.-.|++++|.+.+++....  .|...++.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence            345566666666666667777777777777774  366666666666777777777777777777653  46655553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.31  E-value=0.00012  Score=69.00  Aligned_cols=54  Identities=9%  Similarity=0.113  Sum_probs=43.8

Q ss_pred             CCCChhHHHHHHHHHHhc-----CCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038914           51 TTITPNDALCVFDYMLNM-----RPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNST  104 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  104 (570)
                      ..|++++|+.+++++++.     +|.+++ ..+++.++.+|..+|++++|+.++++++..
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i  369 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP  369 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            467999999999998863     453333 356889999999999999999999998753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.30  E-value=0.00036  Score=50.45  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           50 ITTITPNDALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      ...|++++|+..|+.+++.+|  .+.. +|..++.++...|++++|++.|+++++.  .|+......             
T Consensus        11 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~-------------   73 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQA-------------   73 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHH-------------
T ss_pred             HHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHH-------------
Confidence            346799999999999999998  7788 9999999999999999999999999987  444322110             


Q ss_pred             hhCCHHHHHHHHHHHHh
Q 038914          129 VESRIMEAAALFTKLRV  145 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~  145 (570)
                       .+.+.++...|++...
T Consensus        74 -~~~~~~a~~~~~~~~~   89 (99)
T 2kc7_A           74 -RKMVMDILNFYNKDMY   89 (99)
T ss_dssp             -HHHHHHHHHHHCCTTH
T ss_pred             -HHHHHHHHHHHHHHhc
Confidence             0256667777766544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.25  E-value=3.3e-07  Score=83.76  Aligned_cols=260  Identities=12%  Similarity=0.105  Sum_probs=143.7

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhC
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVES  131 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  131 (570)
                      -++.+.|.++.+++       ..+..|..++.+....++..+|++.|-++.      |...|..++.++.+.       |
T Consensus        38 i~~ldRa~eyA~~~-------n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~-------~   97 (624)
T 3lvg_A           38 IGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTS-------G   97 (624)
T ss_dssp             GCCSTTTTTSSSSC-------CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTS-------S
T ss_pred             ccccHHHHHHHHHh-------CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhC-------C
Confidence            34566665555544       445677888888888888877777664332      344566677766654       4


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHH
Q 038914          132 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDK  211 (570)
Q Consensus       132 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  211 (570)
                      .+++-+..+.-..+.  ..++.+=+.|+-+|.+.++..+-.+.    +.         .|+..-...+++-|...|.++.
T Consensus        98 ~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef----l~---------~~N~A~iq~VGDrcf~e~lYeA  162 (624)
T 3lvg_A           98 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEF----IN---------GPNNAHIQQVGDRCYDEKMYDA  162 (624)
T ss_dssp             CCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST----TS---------CCSSSCTHHHHHHHHHSCCSTT
T ss_pred             CHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH----Hc---------CCCcccHHHHHHHHHHccCHHH
Confidence            777777766554443  22444555777888887776653322    21         3555566667777777777777


Q ss_pred             HHHHHHHHHhCC--------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038914          212 AKELFLKMKDEN--------------------INPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMD  271 (570)
Q Consensus       212 a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  271 (570)
                      |.-+|..+....                    -.-++.||..+-.+|...+.+.-|.-.--.++-.     ..-...++.
T Consensus       163 AKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~  237 (624)
T 3lvg_A          163 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELIN  237 (624)
T ss_dssp             SSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGS
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHH
Confidence            776665543210                    0125567777777777777766655444443321     111223445


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHhhHHHHHHHHH
Q 038914          272 ELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMES-NGCMH------DVVSYSILINGYC  344 (570)
Q Consensus       272 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~  344 (570)
                      .|-..|.+++.+.+++..+.. -.....+|+.|.-.|++- ++++..+.++..-+ .+++.      ....|.-++-.|.
T Consensus       238 ~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~  315 (624)
T 3lvg_A          238 YYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD  315 (624)
T ss_dssp             SSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHh
Confidence            566666677766666665532 123445566666555554 23333333322111 11111      2234555555555


Q ss_pred             hcCCHHHHH
Q 038914          345 KTKDVEEGL  353 (570)
Q Consensus       345 ~~~~~~~A~  353 (570)
                      .-.+++.|.
T Consensus       316 ~ydE~DnA~  324 (624)
T 3lvg_A          316 KYEEYDNAI  324 (624)
T ss_dssp             HHTCHHHHH
T ss_pred             cchhHHHHH
Confidence            555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.24  E-value=0.013  Score=53.06  Aligned_cols=43  Identities=7%  Similarity=0.142  Sum_probs=28.8

Q ss_pred             HHhcCCCCCCHHhHHHHHHHH--HhcC---ChHHHHHHHHHHHhCCCCCCHh
Q 038914           65 MLNMRPSRPPVTSFNILFGCL--AKTK---HYDTVLSLFKRLNSTGLFPDLY  111 (570)
Q Consensus        65 ~~~~~~~~~~~~~~~~l~~~~--~~~g---~~~~A~~~~~~~~~~~~~~~~~  111 (570)
                      +....|  .+..+|...+++.  ...+   ...+|+.+|+++++.  .|+..
T Consensus       186 ~~~~~p--~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a  233 (372)
T 3ly7_A          186 LQKILP--HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFT  233 (372)
T ss_dssp             HHHHSC--SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred             HhccCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCH
Confidence            334444  6778887766544  3333   457899999999988  67643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.21  E-value=0.00073  Score=63.75  Aligned_cols=92  Identities=7%  Similarity=-0.176  Sum_probs=62.0

Q ss_pred             cCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHH
Q 038914          165 TGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-----N--INPNAVTYTSLIC  236 (570)
Q Consensus       165 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~  236 (570)
                      .|++++|+.++++.+..... +|...+....+++.|+.+|...|++++|+.++++.+..     |  .+....+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            57888999998887764321 22112222567888888888888888888888877642     2  1122456777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 038914          237 GFCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       237 ~~~~~~~~~~a~~~~~~~~~  256 (570)
                      .|...|++++|+.++++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            77778888777777776654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.18  E-value=0.0055  Score=43.32  Aligned_cols=50  Identities=6%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG  105 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  105 (570)
                      ..++|...|+++++.+|  .++.++..++..+.+.|++++|+..|++++...
T Consensus        24 ~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A           24 MTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            36899999999999999  899999999999999999999999999999984

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.16  E-value=0.0016  Score=61.57  Aligned_cols=98  Identities=11%  Similarity=-0.009  Sum_probs=70.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCC-CCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHH
Q 038914          159 INGLCRTGHTIVALNLFEEMANGNGE-IGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE-----N--INPNAVT  230 (570)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~  230 (570)
                      +..+.+.|++++|+.++++++..... +|...+....+++.|+.+|...|++++|+.++++++..     |  .+....+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            44566789999999999999875422 22222223567888999999999999999998887642     2  1122456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~  256 (570)
                      ++.|...|...|++++|+.++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77788888888888888888777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.10  E-value=0.0015  Score=61.66  Aligned_cols=100  Identities=10%  Similarity=-0.112  Sum_probs=69.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc-----C-CCCC-cc
Q 038914           81 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF-----G-CEPD-VF  153 (570)
Q Consensus        81 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~  153 (570)
                      .+..+.++|++++|++++++++......-......++..+..++..|..+|++++|+.++++++..     | ..|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            345567889999999999999865322111111223333444444566678999999999988753     2 1223 24


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038914          154 TYNTLINGLCRTGHTIVALNLFEEMAN  180 (570)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  180 (570)
                      +++.|..+|...|++++|+.+++++.+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            588899999999999999999998875

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.02  E-value=7.2e-08  Score=87.98  Aligned_cols=259  Identities=14%  Similarity=0.132  Sum_probs=167.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038914           89 KHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHT  168 (570)
Q Consensus        89 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  168 (570)
                      ++.++|.+..++.-.    |  ..|..+-.+..+       .+++.+|+..|=+      ..|+..|..+|.+..+.|.+
T Consensus        39 ~~ldRa~eyA~~~n~----p--~VWs~LgkAqL~-------~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~   99 (624)
T 3lvg_A           39 GNLDRAYEFAERCNE----P--AVWSQLAKAQLQ-------KGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNW   99 (624)
T ss_dssp             CCSTTTTTSSSSCCC----C--CCSSSHHHHTTT-------SSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCC
T ss_pred             cccHHHHHHHHHhCC----c--cHHHHHHHHHHc-------cCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCH
Confidence            455666555443332    2  233344444433       4588888776543      23677888999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038914          169 IVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAK  248 (570)
Q Consensus       169 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  248 (570)
                      ++-+..+..+.+..        .+...=+.|+-+|++.++..+.++++.       .||..-...+.+-|...|.++.|.
T Consensus       100 edLv~yL~MaRk~~--------ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAK  164 (624)
T 3lvg_A          100 EELVKYLQMARKKA--------RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK  164 (624)
T ss_dssp             TTHHHHHHTTSTTC--------CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSS
T ss_pred             HHHHHHHHHHHHHh--------cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHH
Confidence            99999998887753        345566789999999999877655542       356666777888888888888887


Q ss_pred             HHHHHHHHC--------------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038914          249 HLFIEMMDQ--------------------GVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGY  308 (570)
Q Consensus       249 ~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  308 (570)
                      -+|..+...                    .-.-+..+|..+-.+|...+++.-|.-.--.++-.     ..-...++..|
T Consensus       165 ilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~Y  239 (624)
T 3lvg_A          165 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYY  239 (624)
T ss_dssp             TTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSS
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHH
Confidence            777654321                    01236678999999999999888876654444432     11233456667


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHhhc
Q 038914          309 CLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK-GIR------PTVVTYHTLFLGLFEV  381 (570)
Q Consensus       309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~  381 (570)
                      -..|-+++-+.+++...... ......|+-|.-.|++- ++++..+.++..-.+ +++      -....|..++-.|.+-
T Consensus       240 E~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y  317 (624)
T 3lvg_A          240 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  317 (624)
T ss_dssp             STTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc
Confidence            78888999888888876432 34667788888777765 455555554433222 111      0233455566666666


Q ss_pred             CCHHHHH
Q 038914          382 HQVEHAL  388 (570)
Q Consensus       382 ~~~~~a~  388 (570)
                      .+++.|.
T Consensus       318 dE~DnA~  324 (624)
T 3lvg_A          318 EEYDNAI  324 (624)
T ss_dssp             TCHHHHH
T ss_pred             hhHHHHH
Confidence            6666554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.92  E-value=0.006  Score=43.79  Aligned_cols=55  Identities=20%  Similarity=0.239  Sum_probs=24.8

Q ss_pred             HHhhcCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038914          377 GLFEVHQVEHALKLFDEMRRNHVAANTY-IYTTFIDGLCKNGYIVKAVELFRTLRIL  432 (570)
Q Consensus       377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  432 (570)
                      .+...|++++|...++.+.+.. +.+.. .+..+..++...|++++|...|+++.+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3344444444444444444432 22333 4444444444455555555555544443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.86  E-value=0.013  Score=45.30  Aligned_cols=80  Identities=18%  Similarity=0.068  Sum_probs=46.1

Q ss_pred             HHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 038914          455 EIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAKGLEP--NFVIFNTLMLGFIRNNETSKVIE  529 (570)
Q Consensus       455 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~  529 (570)
                      ..+.+-|.+..+.+ .++..+...+.+++++++   +.++++.+++...+.. .|  +...+..+..++.+.|++++|++
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            34444454444443 345555556666666666   4446666666666642 23  24455556666667777777777


Q ss_pred             HHHHHHh
Q 038914          530 LLHRMDM  536 (570)
Q Consensus       530 ~~~~~~~  536 (570)
                      +++++++
T Consensus        93 y~~~lL~   99 (152)
T 1pc2_A           93 YVRGLLQ   99 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.80  E-value=0.032  Score=58.21  Aligned_cols=49  Identities=10%  Similarity=-0.070  Sum_probs=29.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCcc--cccchhhhh
Q 038914          515 MLGFIRNNETSKVIELLHRMDMRNVMPDA----STLSIVVDLLVKNEIS--LNSIPQFKR  568 (570)
Q Consensus       515 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~--~~a~~~~~~  568 (570)
                      +..|.+.+++++|..+.++.     .|..    .......+.+...|+.  .+|+..++.
T Consensus       756 ~~~~~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~~  810 (814)
T 3mkq_A          756 KDLLIKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVSERVCGAEG  810 (814)
T ss_dssp             HHHHHHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGGG
T ss_pred             HHHHHHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHHHhhCCccc
Confidence            34455556666666655543     3444    5666666677778864  466666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.72  E-value=0.015  Score=41.03  Aligned_cols=64  Identities=5%  Similarity=-0.033  Sum_probs=28.2

Q ss_pred             ChhhHHHHHHHHHhcCC---HHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          437 NIVSYNCLIDGLCKHGR---LEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       437 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +...+..+..++...++   .++|..++++.++.. +.+......++..+...|++++|+..|+++.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444444444433222   344555555444431 22234444444444455555555555555444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.54  E-value=0.016  Score=50.12  Aligned_cols=98  Identities=12%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914           53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAK-----TKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL  127 (570)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  127 (570)
                      +....|...++++++.+|...+..+|..++..|..     -|+.++|.+.|++++..++.-+.......-..++..    
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~----  252 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP----  252 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT----
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----
Confidence            34679999999999999944478899999999999     499999999999999984321222322222322221    


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCC--CCcchHH
Q 038914          128 CVESRIMEAAALFTKLRVFGCE--PDVFTYN  156 (570)
Q Consensus       128 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~  156 (570)
                        .|+.+++.+.+++.+.....  |+....+
T Consensus       253 --~gd~~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          253 --LNNRAGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             --TTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             --cCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence              37999999999999987555  4443333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.51  E-value=0.022  Score=44.01  Aligned_cols=84  Identities=13%  Similarity=0.035  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHHHH
Q 038914          420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHG---RLEIAWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKAHG  494 (570)
Q Consensus       420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~  494 (570)
                      ..+.+.|.+....+ +++..+...+..++++.+   +.+++..+|++..+.. .|  +...+-.+.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            34444555554444 456666666666777766   4557777777776643 23  23445556666777777777777


Q ss_pred             HHHHHHHCCCCCC
Q 038914          495 LFLDMEAKGLEPN  507 (570)
Q Consensus       495 ~~~~~~~~~~~p~  507 (570)
                      +++.+++  +.|+
T Consensus        93 y~~~lL~--ieP~  103 (152)
T 1pc2_A           93 YVRGLLQ--TEPQ  103 (152)
T ss_dssp             HHHHHHH--HCTT
T ss_pred             HHHHHHh--cCCC
Confidence            7777777  4564

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.43  E-value=0.086  Score=40.11  Aligned_cols=115  Identities=17%  Similarity=0.053  Sum_probs=67.0

Q ss_pred             CChhhHHHHHHHHHhcCCH------HHHHHHHHhhhhCCCCCChh-hHHHHHH------HHHhcCChhHHHHHHHHHHHC
Q 038914          436 LNIVSYNCLIDGLCKHGRL------EIAWELFSSLPRVGLMADVV-TYNIMIH------GLCNDGQMDKAHGLFLDMEAK  502 (570)
Q Consensus       436 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~  502 (570)
                      .|..+|-..+....+.|+.      +...++|+++... ++|+.. .|...+.      .+...++.++|.++|+.+++.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3445555555555555555      5556666665553 344321 1111111      122347888888888888764


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038914          503 GLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLL  553 (570)
Q Consensus       503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  553 (570)
                      +-.- ...|.....--.++|+.+.|.+++.+.+..+- .+...+...+.-+
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~nl  138 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALRNL  138 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHHhh
Confidence            2222 66666667777788888888888888886552 2345555555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.42  E-value=0.048  Score=56.92  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=104.7

Q ss_pred             HHHHhcCCHHHHHH-HHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 038914          341 NGYCKTKDVEEGLN-LYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYI  419 (570)
Q Consensus       341 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  419 (570)
                      ......+++++|.+ ++..+      ++......++..+.+.|.++.|+.+.+.         ..   .-.......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence            44456788888876 44221      1123336677777788888888766532         11   112334567899


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          420 VKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDM  499 (570)
Q Consensus       420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  499 (570)
                      +.|.++.+.+      .+...|..+...+.+.|+++.|.+.|..+.+         |..+...+...|+.+...++.+.+
T Consensus       669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence            9888876432      4677899999999999999999999988764         345556666688888777776666


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          500 EAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      ...|   +   ++....++.+.|++++|++++.++.
T Consensus       734 ~~~~---~---~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          734 ETTG---K---FNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHcC---c---hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            6543   2   2334456777889999988887774

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.15  Score=40.41  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=62.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038914          160 NGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFC  239 (570)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  239 (570)
                      ....+.|+++.|.++.+.+            .+...|..|.......|+++-|++.|.+..+         +..+.-.|.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~   71 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYL   71 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHH
Confidence            3345667777777776654            1356777777777777777777777776653         444555566


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038914          240 YANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLEL  288 (570)
Q Consensus       240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  288 (570)
                      ..|+.+....+-+.....|      -++....++.-.|+++++.++|.+
T Consensus        72 ~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           72 VTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666666555544444432      244445555566777777776644

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.21  E-value=0.064  Score=40.79  Aligned_cols=108  Identities=12%  Similarity=0.045  Sum_probs=77.1

Q ss_pred             CCCHHhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH
Q 038914           72 RPPVTSFNILFGCLAKTKHY------DTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLR  144 (570)
Q Consensus        72 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (570)
                      +.|.++|-..+..+-+.|++      ++.+++|+++... ++|+. ..+...+..+.+-. .+...++.++|..+|+.++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence            37888898888888888999      8999999999886 34432 22222222222211 1233479999999999997


Q ss_pred             hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          145 VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       145 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      ..+ +.-..+|......-.+.|+..+|..++......+
T Consensus        88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            752 3235567777777789999999999999999875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.12  E-value=0.062  Score=38.84  Aligned_cols=61  Identities=13%  Similarity=-0.018  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          441 YNCLIDGLCKHGRLEIAWELFSSLPRVG------LMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +..++..+...|++..|...|+.+.+..      -.+....+..++.++.+.|+++.|..+++++.+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3444445555555555555555444310      011223444444455555555555555544444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.07  E-value=0.034  Score=40.26  Aligned_cols=72  Identities=13%  Similarity=-0.044  Sum_probs=54.2

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE  222 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  222 (570)
                      +...+..++..+.+.|++..|..+|+.+.+...+......+....+..|..++.+.|+++.|...++++...
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            445567789999999999999999999887421100001234667888889999999999999999988875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.51  Score=37.46  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 038914          201 DGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMD  280 (570)
Q Consensus       201 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  280 (570)
                      ......|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.....         +..+.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            3345667777777776655      1566777777777777777777777765432         344444555666666


Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          281 GASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVS  323 (570)
Q Consensus       281 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  323 (570)
                      ...++-+.....|      -++....++...|+++++.++|.+
T Consensus        78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6655555554443      133444455566777777666644

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.32  E-value=0.15  Score=37.82  Aligned_cols=81  Identities=19%  Similarity=0.062  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 038914          454 LEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK---AHGLFLDMEAKGLEP--NFVIFNTLMLGFIRNNETSKVI  528 (570)
Q Consensus       454 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~  528 (570)
                      ...+.+-|......| .++..+-..+.++++++.+...   ++.+++...+.+ .|  .......+..++.+.|++++|+
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            344444454444433 2555555566666666665555   666666665542 12  2334455566777777777777


Q ss_pred             HHHHHHHh
Q 038914          529 ELLHRMDM  536 (570)
Q Consensus       529 ~~~~~~~~  536 (570)
                      ++++.+++
T Consensus        95 ~~~~~lL~  102 (126)
T 1nzn_A           95 KYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777775

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.26  E-value=0.14  Score=37.89  Aligned_cols=86  Identities=13%  Similarity=0.008  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHhhhhCCCCC--ChhhHHHHHHHHHhcCChhHH
Q 038914          418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEI---AWELFSSLPRVGLMA--DVVTYNIMIHGLCNDGQMDKA  492 (570)
Q Consensus       418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A  492 (570)
                      ....+.+.+......+ .++..+-..+..++.+..+...   ++.+++.+.+.+ .|  .....-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3444555555554444 4666666667777777776555   777777777653 23  223444566677888888888


Q ss_pred             HHHHHHHHHCCCCCC
Q 038914          493 HGLFLDMEAKGLEPN  507 (570)
Q Consensus       493 ~~~~~~~~~~~~~p~  507 (570)
                      .++++.+++  +.|+
T Consensus        94 ~~~~~~lL~--~eP~  106 (126)
T 1nzn_A           94 LKYVRGLLQ--TEPQ  106 (126)
T ss_dssp             HHHHHHHHH--HCTT
T ss_pred             HHHHHHHHH--hCCC
Confidence            888888887  4564

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.48  E-value=1.1  Score=33.44  Aligned_cols=138  Identities=14%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914          380 EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE  459 (570)
Q Consensus       380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  459 (570)
                      -.|..++..++..+....   .+..-++.++--....-+-+-..++++.+-+.   .|.          ...|+......
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence            456666777766666553   23444555554444444444444444444221   121          12444444444


Q ss_pred             HHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038914          460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNV  539 (570)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  539 (570)
                      .+-.+-     .+...++..+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.++++++.+.|+
T Consensus        83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            444332     24455667777888899999999998886543 578888899999999999999999999999998885

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.42  E-value=5.4  Score=41.24  Aligned_cols=273  Identities=10%  Similarity=0.024  Sum_probs=148.4

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHhhHHH--HH
Q 038914          272 ELCKNGKMDGASRLLELMILRGVKPDT--STYNTLIDGYCLTGKIDRARELFVSMESNGC-------MHDVVSYSI--LI  340 (570)
Q Consensus       272 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~--l~  340 (570)
                      +....|+.++++.++...+..+...+.  ..-..+.-+....|..+++..++...+...-       .+....-..  |.
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            355677888887777665542101122  2223334445556665677777776554321       011111222  22


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--HHHhc
Q 038914          341 NGYCKTKDVEEGLNLYRKMLSKGIRPTV--VTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID--GLCKN  416 (570)
Q Consensus       341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~  416 (570)
                      -+|.-.++ +++.+.+..+....- +..  ..-..+...+.-.|+.+....++..+.+..   +..+...++.  ++...
T Consensus       463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY  537 (963)
T ss_dssp             HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence            33333444 456666666655311 111  112233344556788888888888776532   3333333333  44467


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038914          417 GYIVKAVELFRTLRILKYELNIVSY--NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHG  494 (570)
Q Consensus       417 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  494 (570)
                      |+.+.+..+++.+.... .|....-  ..+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+
T Consensus       538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r  615 (963)
T 4ady_A          538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR  615 (963)
T ss_dssp             TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred             CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence            89888888888887642 2322222  234456778889888887988887631 2233333344445556777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038914          495 LFLDMEAKGLEPNFVIFNTLMLGFIRNNET-SKVIELLHRMDMRNVMPDASTLSIVVDLLVK  555 (570)
Q Consensus       495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  555 (570)
                      ++..+.+.+ .|....-..+..+....|.. .+++.++..+..   .+|..+-..-+.+++.
T Consensus       616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~  673 (963)
T 4ady_A          616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM  673 (963)
T ss_dssp             HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence            777666543 34333333444455555554 678888888873   3555555444444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.21  E-value=0.28  Score=49.33  Aligned_cols=51  Identities=22%  Similarity=0.224  Sum_probs=33.3

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          483 LCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRM  534 (570)
Q Consensus       483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  534 (570)
                      |...|+++.|+++-+++... .+-+..+|..|+.+|...|+++.|+-.++.+
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44566777777777776663 2224667777777777777777777666665

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.19  E-value=1.3  Score=33.09  Aligned_cols=63  Identities=19%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914          405 IYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG  468 (570)
Q Consensus       405 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  468 (570)
                      .+...+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            3344444455555555555555554332 24555555555555555555555555555555544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.71  E-value=4.8  Score=38.06  Aligned_cols=189  Identities=11%  Similarity=0.034  Sum_probs=83.8

Q ss_pred             CChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----HhcC
Q 038914          277 GKMDGASRLLELMILR-----GVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGY----CKTK  347 (570)
Q Consensus       277 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~  347 (570)
                      |++.+|++.+-.+.+.     +..........++..|...++++...+.+..+...... .......+++.+    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence            5677777766555432     23334556666777777777777776666555433211 112222333222    1222


Q ss_pred             CHHHHHH--HHHHHHhC--C-CCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCcC---HHHHHHHHHHHH
Q 038914          348 DVEEGLN--LYRKMLSK--G-IRPT---VVTYHTLFLGLFEVHQVEHALKLFDEMRRN--HVAAN---TYIYTTFIDGLC  414 (570)
Q Consensus       348 ~~~~A~~--~~~~~~~~--~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~  414 (570)
                      ..+....  +...+...  | +...   ......+...+...|++.+|..++..+...  +....   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            2221111  11110000  0 0000   011234455555666666666666655431  11111   123444455555


Q ss_pred             hcCCHHHHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          415 KNGYIVKAVELFRTLRI----LKYELN--IVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       415 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      ..+++.+|..++.++..    ...+|+  ...+...+..+...+++.+|.+.|.++.+
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            66666666666555431    111111  12334444455555666666555555543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.44  E-value=0.31  Score=37.96  Aligned_cols=108  Identities=11%  Similarity=0.021  Sum_probs=70.6

Q ss_pred             CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcC--CC-
Q 038914           74 PVTSFNILFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFG--CE-  149 (570)
Q Consensus        74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-  149 (570)
                      +..++..-+..+...|.|+.|+-+.+.++... ..|+..+-..-...+...|+.+..+|+|..|...|++.+...  +. 
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            33455666778889999999999988866542 234432222223333334456777889999999999965320  00 


Q ss_pred             ---------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914          150 ---------------------PDVFTYNTLINGLCRTGHTIVALNLFEEMANG  181 (570)
Q Consensus       150 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  181 (570)
                                           .+...-..+..++.+.+++++|+.+++.+...
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence                                 01123345778889999999999999987654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.25  E-value=8.8  Score=39.72  Aligned_cols=320  Identities=12%  Similarity=-0.010  Sum_probs=173.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCCHhhHHHHHH
Q 038914          236 CGFCYANDWNEAKHLFIEMMDQGVQPNVV--TFTVIMDELCKNGKMDGASRLLELMILRGV-------KPDTSTYNTLID  306 (570)
Q Consensus       236 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~  306 (570)
                      -+....|+.++++.+++.....+...+..  .-..+.-..+..|..+++..++...+...-       .+....-..+.-
T Consensus       382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            44566788888877777655421111222  222333345566666678887777665421       011122223333


Q ss_pred             HHHhcCC-HHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHhhc
Q 038914          307 GYCLTGK-IDRARELFVSMESNGCMHDV--VSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTL--FLGLFEV  381 (570)
Q Consensus       307 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~  381 (570)
                      +.+..|. -+++...+..+..... ...  ..--.+...+...|+.+....++..+.+..   +......+  .-++...
T Consensus       462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY  537 (963)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence            3333332 2455666666655321 111  112234445667788888888888777641   33333333  3344467


Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914          382 HQVEHALKLFDEMRRNHVAANTYI--YTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWE  459 (570)
Q Consensus       382 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  459 (570)
                      |+.+.+..+++.+.... .|....  ...+.-+|+..|+......++..+.... ..++.....+.-++...|+.+.+.+
T Consensus       538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r  615 (963)
T 4ady_A          538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR  615 (963)
T ss_dssp             TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred             CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence            88888888888887642 222222  2234456778899888888988887642 2333333444445556787777888


Q ss_pred             HHHhhhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcC-------CHHHHHH
Q 038914          460 LFSSLPRVGLMADVVTYNIMIHGLCNDGQM-DKAHGLFLDMEAKGLEPNFVIFNTLML--GFIRNN-------ETSKVIE  529 (570)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g-------~~~~a~~  529 (570)
                      +++.+.+.+ .|...--..+..+....|.. .++...+..+..   .+|..+-...+.  +..-.|       +....++
T Consensus       616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~  691 (963)
T 4ady_A          616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK  691 (963)
T ss_dssp             HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence            888777653 44443333444444445543 578888888875   345444433332  333333       3334444


Q ss_pred             HHHHHHh-CCCCCCHHHHHHHHHHHHccCcccccchh
Q 038914          530 LLHRMDM-RNVMPDASTLSIVVDLLVKNEISLNSIPQ  565 (570)
Q Consensus       530 ~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  565 (570)
                      .+.+... ..-.++......+...+...|+-.--+..
T Consensus       692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~  728 (963)
T 4ady_A          692 NFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL  728 (963)
T ss_dssp             HHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECS
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            4444432 22234566777777878888776544443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.10  E-value=0.73  Score=42.77  Aligned_cols=70  Identities=11%  Similarity=0.134  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA-----KGLEPNFVI  510 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~  510 (570)
                      +...++.++...|++++|...+..+.... +-+...|..++.++...|+..+|++.|+++.+     .|+.|...+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            33445555556666666666666655532 33455666666666666666666666665433     355555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.82  E-value=6.6  Score=37.11  Aligned_cols=198  Identities=13%  Similarity=0.026  Sum_probs=113.1

Q ss_pred             CCChhHHHHHHHHHHhc----CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 038914           52 TITPNDALCVFDYMLNM----RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSL  127 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  127 (570)
                      .|++++|+..+-.+.+.    ............++..+...|+++...+.+..+.+........ ...++..+...   .
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a-i~~~V~~~~~~---l  104 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS-IQYMIQKVMEY---L  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH-HHHHHHHHHHH---H
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHH---H
Confidence            46888998877665542    1113446667788899999999999988887776553333222 22333322210   0


Q ss_pred             hhhCCHHH--HHHHHHHHHhcCCCCC---c-----chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHH
Q 038914          128 CVESRIME--AAALFTKLRVFGCEPD---V-----FTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYT  197 (570)
Q Consensus       128 ~~~~~~~~--A~~~~~~~~~~~~~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (570)
                      ......+.  -..+.+.+.  .+...   .     .....|...+...|++.+|..++..+...-.... ...--...+.
T Consensus       105 ~~~~~~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~-~~~~kve~~l  181 (445)
T 4b4t_P          105 KSSKSLDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM-EMSEKIQFIL  181 (445)
T ss_dssp             HHHCTTHHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS-CHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence            00111111  111111111  11111   1     1234577888889999999999999875321000 0001145677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914          198 TIIDGLCKKGFVDKAKELFLKMKD----ENINPN--AVTYTSLICGFCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       198 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  256 (570)
                      ..+..|...+++.+|..++.++..    ...+|+  ...+...+..+...++|.+|-..|.++..
T Consensus       182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            778888888999999888887642    211222  23455666777777888887777766643

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.82  E-value=1.6  Score=32.50  Aligned_cols=71  Identities=11%  Similarity=0.045  Sum_probs=50.0

Q ss_pred             CCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          470 MADVVTYNIMIHGLCNDGQM---DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD  542 (570)
Q Consensus       470 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  542 (570)
                      .|+..+--.+.+++.++.+.   .+++.+++...+.+-.-....+..+..++.+.|++++|+++.+.+++  +.|+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~  110 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN  110 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence            56666666777788877644   45777787777654111345667777788888999999998888885  4565

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.72  E-value=0.79  Score=46.20  Aligned_cols=127  Identities=17%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc------CCC
Q 038914           79 NILFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYAY--NILINCFLQNGSSLCVESRIMEAAALFTKLRVF------GCE  149 (570)
Q Consensus        79 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~  149 (570)
                      ..++..+...|+ ++.|+.+++++...  .|....+  ..++..+...+      .+--+|.+++.+.++.      ..+
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~------~~Ev~av~ll~~~l~~~~~~~~~l~  323 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIE------TKELDMITILNETLDPLLSLLNDLP  323 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCG------GGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhhhhhhhhc
Confidence            345555555666 58899999999887  4544332  22233222221      1333455555544321      111


Q ss_pred             C-Ccc----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038914          150 P-DVF----------TYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLK  218 (570)
Q Consensus       150 ~-~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  218 (570)
                      + +..          ....-...|...|+++-|+.+.+++....       +.+-.+|..|..+|...|+++.|+-.+..
T Consensus       324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            1 111          12222344667899999999999999853       45588999999999999999999999988


Q ss_pred             HH
Q 038914          219 MK  220 (570)
Q Consensus       219 ~~  220 (570)
                      +.
T Consensus       397 cP  398 (754)
T 4gns_B          397 MP  398 (754)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.53  E-value=4  Score=34.85  Aligned_cols=117  Identities=9%  Similarity=0.004  Sum_probs=79.5

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      +++.|++++|+......++.+|  .|...-..+++.++-.|+|++|.+-++.+.+.  .|+......+....        
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P--~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~l--------   74 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHL--------   74 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHH--------
T ss_pred             HHhCCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHH--------
Confidence            4578899999999999999999  89999999999999999999999999999887  55543322222211        


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCC----cc-hHHHHHHHHH--hcCChhHHHHHHHHHHhCC
Q 038914          129 VESRIMEAAALFTKLRVFGCEPD----VF-TYNTLINGLC--RTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~----~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~  182 (570)
                           -.|...=.++..-+-.|.    +. -...++.++.  ..|+.++|..+-+.+.+..
T Consensus        75 -----I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a  130 (273)
T 1zbp_A           75 -----VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  130 (273)
T ss_dssp             -----HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence                 122222233333222221    12 2334555543  4699999999988886643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.22  E-value=3.7  Score=44.37  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038914          155 YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD--TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYT  232 (570)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  232 (570)
                      |..++..+-+.+.++.+++.-..+.+....    -.++  ...|..+...+...|++++|...+-.+.....  -...+.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~----~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr  975 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKET----DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLL  975 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCS----CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccC----CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHH
Confidence            566777777888888888877777654310    0111  22567778888888888888888877766533  355666


Q ss_pred             HHHHHHHhcCCHH
Q 038914          233 SLICGFCYANDWN  245 (570)
Q Consensus       233 ~l~~~~~~~~~~~  245 (570)
                      .|+..++..|..+
T Consensus       976 ~LV~~lce~~~~~  988 (1139)
T 4fhn_B          976 DFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHHHCCHH
T ss_pred             HHHHHHHhCCChh
Confidence            6776666665544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.48  E-value=0.71  Score=42.83  Aligned_cols=55  Identities=11%  Similarity=0.060  Sum_probs=26.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEM  254 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  254 (570)
                      ++..+...|+.++++..+..+... .+.+...|..+|.++...|+..+|++.|+.+
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444445555555444444433 2334444555555555555555555554443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.44  E-value=9.1  Score=41.42  Aligned_cols=130  Identities=14%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038914          265 TFTVIMDELCKNGKMDGASRLLELMILRGVKPDT----STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILI  340 (570)
Q Consensus       265 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  340 (570)
                      -|..++..+-+.+.++.+.++-...++.....+.    ..|..+.+.+...|++++|...+-.+.....  -......++
T Consensus       901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV  978 (1139)
T 4fhn_B          901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence            3455555556666666666555555443211111    1345555666666666666665555544321  223344444


Q ss_pred             HHHHhc------------CCHHHHHHHHHHHHh-C-CCCCChhhHHHHHHHHhhcCCHHHHHH-HHHHHHh
Q 038914          341 NGYCKT------------KDVEEGLNLYRKMLS-K-GIRPTVVTYHTLFLGLFEVHQVEHALK-LFDEMRR  396 (570)
Q Consensus       341 ~~~~~~------------~~~~~A~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~  396 (570)
                      ..++..            |..++..+++..-.. . .+...+.-|..|-.-+...|++..|-. +|+.+.+
T Consensus       979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            433333            334444455433221 1 011112224444444556777765544 4455443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.42  E-value=7.1  Score=34.47  Aligned_cols=26  Identities=19%  Similarity=0.096  Sum_probs=17.3

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038914          297 DTSTYNTLIDGYCLTGKIDRARELFV  322 (570)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~~~a~~~~~  322 (570)
                      +......+...|.+.+++.+|...|-
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            55566667777777777777766553

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.63  E-value=4.4  Score=30.64  Aligned_cols=71  Identities=11%  Similarity=0.057  Sum_probs=49.0

Q ss_pred             CCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038914          470 MADVVTYNIMIHGLCNDGQM---DKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD  542 (570)
Q Consensus       470 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  542 (570)
                      .|+..+--.+.+++.++.+.   .+++.+++.....+-.-.......+..++.+.|++++|+++.+.+++.  .|+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~  109 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN  109 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence            46666666777888877644   457777777776432123445566777888888888888888888864  565

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.28  E-value=5.2  Score=31.20  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=11.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhh
Q 038914          444 LIDGLCKHGRLEIAWELFSSLP  465 (570)
Q Consensus       444 l~~~~~~~g~~~~A~~~~~~~~  465 (570)
                      +..+|.+.+++++|+.+++.+.
T Consensus       128 ia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          128 LAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHCCHHHHHHHHhcCC
Confidence            4455555555555555555543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.11  E-value=9.5  Score=33.68  Aligned_cols=173  Identities=12%  Similarity=0.116  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHH----HHHHHHhcCCCCCc
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAA----LFTKLRVFGCEPDV  152 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~  152 (570)
                      .+.++..-|.+++++++|++++......               +.       +.|+...|..    +.+-+.+.+.+++.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~---------------ll-------~~~Q~~sa~DLa~llvev~~~~~~~~~~   92 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGALS---------------FL-------KAKQGGSGTDLIFYLLEVYDLAEVKVDD   92 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH-------HTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------HH-------HCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence            3445556677788888888886554321               11       1123333333    34444455667777


Q ss_pred             chHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          153 FTYNTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       153 ~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      .....++..+......+ .=.++++.+.+.....|.....|+..+..+...|.+.|++.+|+.-|-...    ..+...+
T Consensus        93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~  168 (312)
T 2wpv_A           93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKY  168 (312)
T ss_dssp             HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHH
Confidence            77777777665533211 123333333322111111123467788888889999999888887764211    1134555


Q ss_pred             HHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038914          232 TSLICGFCYA---NDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMI  290 (570)
Q Consensus       232 ~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  290 (570)
                      ..++.-+...   |...++-              ... ...+--|.-.|+...|..+++...
T Consensus       169 a~~l~~w~~~~~~~~~~e~d--------------lf~-~RaVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          169 VDLLWDWLCQVDDIEDSTVA--------------EFF-SRLVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHHHHHTTCCCHHHHH--------------HHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcchHH--------------HHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence            5555444433   3322211              111 111223455678888888777654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.77  E-value=1.6  Score=32.93  Aligned_cols=61  Identities=7%  Similarity=-0.101  Sum_probs=50.1

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNI  115 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  115 (570)
                      ..+...++.+++.+.+..| .......+.++.++.+.|+|++|+++.+.+++.  .|+......
T Consensus        55 ~~di~~GI~LLe~l~~~~~-~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA~~  115 (144)
T 1y8m_A           55 VNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHCC-STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCc-cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHH
Confidence            3356789999999998877 456778889999999999999999999999998  776654333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.66  E-value=1  Score=33.57  Aligned_cols=61  Identities=8%  Similarity=-0.079  Sum_probs=50.3

Q ss_pred             CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038914           53 ITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNIL  116 (570)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (570)
                      .+...++.+++.+.+.+| ......++-++.++.+.|++++|+++.+.+++.  .|+......+
T Consensus        57 ~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~L  117 (134)
T 3o48_A           57 NDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGAL  117 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence            356789999999998776 445788899999999999999999999999987  7776544443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.12  E-value=3.7  Score=28.73  Aligned_cols=46  Identities=7%  Similarity=0.004  Sum_probs=22.5

Q ss_pred             HHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          456 IAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       456 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-...
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444444444455555555555555555555555555544443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.41  E-value=18  Score=33.34  Aligned_cols=172  Identities=12%  Similarity=-0.003  Sum_probs=99.6

Q ss_pred             HhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH---hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914           76 TSFNILFGCLAKTKHYDTVLSLFKRLNST-GLFPDL---YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD  151 (570)
Q Consensus        76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (570)
                      .+...++..|.+.|+.++..+++...... +..+-.   .....++..+....      +..+.-.++..+.++.. ..+
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~------~~~~~~~~~~~~~~~~a-~~~   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD------AGTGIEVQLCKDCIEWA-KQE   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSC------CCHHHHHHHHHHHHHHH-HHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHH-HHH
Confidence            34577899999999999999988876433 111222   23445566665543      34444455555444321 112


Q ss_pred             cchH------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C
Q 038914          152 VFTY------NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDE--N  223 (570)
Q Consensus       152 ~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~  223 (570)
                      ..+|      ..++..|...|++.+|..++.++.+.-...+. ..--...+..-+..|...+++.++...+......  .
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            2233      25788888999999998888888764211000 0011345666677788888888888888766532  1


Q ss_pred             CCCCHHHHHHH----HHHHH-hcCCHHHHHHHHHHHH
Q 038914          224 INPNAVTYTSL----ICGFC-YANDWNEAKHLFIEMM  255 (570)
Q Consensus       224 ~~~~~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~  255 (570)
                      +.+++..-..+    ...+. ..++|..|...|-+..
T Consensus       172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            22233222211    23345 6778888777765543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=86.00  E-value=7  Score=27.36  Aligned_cols=61  Identities=10%  Similarity=0.050  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038914          384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLI  445 (570)
Q Consensus       384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  445 (570)
                      .=+..+-++.+...+..|++.+..+.+.+|.+.+++..|.++|+.+.... .....+|..++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l   86 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   86 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence            33445555555555666666666666666666666766766666665432 22233454443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.38  E-value=37  Score=33.54  Aligned_cols=44  Identities=7%  Similarity=-0.105  Sum_probs=22.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCccccc
Q 038914          516 LGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNS  562 (570)
Q Consensus       516 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  562 (570)
                      ..+...|....|...+..+...   .+......+.....+.|..+.+
T Consensus       389 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~  432 (618)
T 1qsa_A          389 RELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLS  432 (618)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHH
Confidence            4455667777777666666542   2233333444444445554433

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.50  E-value=13  Score=27.76  Aligned_cols=42  Identities=10%  Similarity=0.143  Sum_probs=18.0

Q ss_pred             HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          389 KLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLR  430 (570)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  430 (570)
                      +-++.+...++.|++.+....+.+|.+.+++..|.++|+-+.
T Consensus        74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK  115 (152)
T 2y69_E           74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK  115 (152)
T ss_dssp             HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.12  E-value=12  Score=35.19  Aligned_cols=63  Identities=11%  Similarity=0.001  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914          194 VTYTTIIDGLCKKGFVDKAKELFLKMKDE--NINPNAVTYTSLICGFCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       194 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  256 (570)
                      .+...++..|.+.|++++|.+.|.++...  +...-...+..+++.+...++|..+...+.++..
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~  196 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS  196 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            46677888888888888888888887764  2222355667777778888888888877777643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.97  E-value=23  Score=30.23  Aligned_cols=54  Identities=24%  Similarity=0.323  Sum_probs=28.7

Q ss_pred             HhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038914          378 LFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRIL  432 (570)
Q Consensus       378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  432 (570)
                      ..+.|+.++++.....-++.. +.|...-..+++.+|-.|++++|..-++...+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            344555555555555444443 444555555555555556666665555555544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.86  E-value=7.2  Score=37.10  Aligned_cols=68  Identities=9%  Similarity=0.125  Sum_probs=47.7

Q ss_pred             HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhc
Q 038914           75 VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVF  146 (570)
Q Consensus        75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (570)
                      ...++.+++.|...+.++.|..+..+..    .|.. ..-......+...|..+..+++|.+|.+.+......
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            4567888888888999999999988875    3322 223334445555566667778888888888887765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.79  E-value=32  Score=31.64  Aligned_cols=26  Identities=12%  Similarity=0.096  Sum_probs=15.9

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHH
Q 038914          264 VTFTVIMDELCKNGKMDGASRLLELM  289 (570)
Q Consensus       264 ~~~~~l~~~~~~~g~~~~a~~~~~~~  289 (570)
                      .+...+...|.+.|+.++...++...
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~   45 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVT   45 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555666666666666666666554

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=81.46  E-value=14  Score=27.46  Aligned_cols=61  Identities=8%  Similarity=-0.017  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHH
Q 038914          421 KAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHG  482 (570)
Q Consensus       421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  482 (570)
                      +..+-++.+...+.-|++.+..+.+.+|.+.+++..|.++|+-+..+ ..+...+|..+++-
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE  131 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence            34445555555556666666666666666666666666666665543 22334445555543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=81.21  E-value=29  Score=30.87  Aligned_cols=80  Identities=11%  Similarity=0.102  Sum_probs=45.3

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 038914          332 DVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFID  411 (570)
Q Consensus       332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  411 (570)
                      ++.....+...|.+.+++.+|...|-  .  |-.+....+..++.-+...+..              ...+..+...++.
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~--------------~e~dlfiaRaVL~  196 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDES--------------HTAPLYCARAVLP  196 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCG--------------GGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCC--------------ccHHHHHHHHHHH
Confidence            66677778888888888888877762  2  2222334555554443333221              1223333333443


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 038914          412 GLCKNGYIVKAVELFRTLR  430 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~  430 (570)
                       |...++...|..+++...
T Consensus       197 -yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          197 -YLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             -HHHTTCHHHHHHHHHHHH
T ss_pred             -HHHhCCHHHHHHHHHHHH
Confidence             556678888887776654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.46  E-value=31  Score=30.71  Aligned_cols=48  Identities=10%  Similarity=-0.063  Sum_probs=28.8

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038914          400 AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH  451 (570)
Q Consensus       400 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  451 (570)
                      .-++.....+...|.+.+++.+|...|-    .+..++...+..++.-+...
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~  180 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ  180 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence            4466677777788888888888877762    23233335555444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	570
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.35
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.31
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.29
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.25
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.2
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.91
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.9
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.89
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.87
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.73
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.56
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.51
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.48
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.29
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.22
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.21
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.18
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.17
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.12
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.12
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.02
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.0
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.99
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.99
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.85
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.8
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.15
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.02
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.95
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.43
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.84
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.73
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.65
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.6
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.23
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	88.69
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.31

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-23  Score=197.13  Aligned_cols=382  Identities=13%  Similarity=0.070  Sum_probs=311.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038914          158 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICG  237 (570)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  237 (570)
                      +...+.+.|++++|++.++++.+..       +.+...+..++.+|.+.|++++|++.|+++.+.+ +-+..+|..+..+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~   76 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4566778899999999999998865       4567889999999999999999999999998864 3367889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038914          238 FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRA  317 (570)
Q Consensus       238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  317 (570)
                      |...|++++|+..+......... +..............+....+........... .................+....+
T Consensus        77 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (388)
T d1w3ba_          77 YKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhh
Confidence            99999999999999999886433 44555555666666677777777666666553 33445555566677778888888


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 038914          318 RELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEMRRN  397 (570)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  397 (570)
                      ...+....... +.+...+..+...+...|++++|...+++...... .+...+..+...+...|++++|...++.....
T Consensus       155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  232 (388)
T d1w3ba_         155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence            88888777654 44677788888999999999999999999887532 25677888889999999999999999988876


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHH
Q 038914          398 HVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYN  477 (570)
Q Consensus       398 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  477 (570)
                      . +.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++...... +.+...+.
T Consensus       233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  309 (388)
T d1w3ba_         233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN  309 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchhhh
Confidence            4 4567778888899999999999999999998875 5677889999999999999999999999988753 55667888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc
Q 038914          478 IMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVVDLLVK  555 (570)
Q Consensus       478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  555 (570)
                      .++.++...|++++|+..|+++++.  .| +..++..+..++...|++++|+..++++++.  .|+ ...+..++.+|.+
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999884  45 5778888999999999999999999999864  454 7788999999887


Q ss_pred             cCc
Q 038914          556 NEI  558 (570)
Q Consensus       556 ~g~  558 (570)
                      .|+
T Consensus       386 ~~D  388 (388)
T d1w3ba_         386 MQD  388 (388)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-23  Score=195.17  Aligned_cols=379  Identities=13%  Similarity=0.048  Sum_probs=316.8

Q ss_pred             chhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc
Q 038914          127 LCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK  206 (570)
Q Consensus       127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  206 (570)
                      +.+.|++++|++.|+++++.. +.+..++..++.++.+.|++++|+..|+++.+.+       +.+..++..++.+|.+.
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHhhhh
Confidence            345689999999999999874 3357788899999999999999999999999875       45678999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914          207 GFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLL  286 (570)
Q Consensus       207 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  286 (570)
                      |++++|++.+........ .+..............+....+............ ................+....+...+
T Consensus        81 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHH
Confidence            999999999999988643 3556666666666677777777776666655433 34455556666777888888998888


Q ss_pred             HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038914          287 ELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRP  366 (570)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  366 (570)
                      ....... +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|+..+++....+. .
T Consensus       159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~  235 (388)
T d1w3ba_         159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N  235 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred             HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-h
Confidence            8887763 3356778888899999999999999999988764 44677899999999999999999999999988643 3


Q ss_pred             ChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038914          367 TVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLID  446 (570)
Q Consensus       367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  446 (570)
                      +...+..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|...++.+.... +.+...+..+..
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  313 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence            66778888999999999999999999998865 4567888899999999999999999999988775 678888999999


Q ss_pred             HHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 038914          447 GLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGFIRNNE  523 (570)
Q Consensus       447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  523 (570)
                      ++...|++++|...|+++++.. +.+..++..++.+|...|++++|...|+++++  +.| +..+|..+..++.+.||
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999998852 33567889999999999999999999999998  456 57789999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-15  Score=137.31  Aligned_cols=226  Identities=14%  Similarity=0.077  Sum_probs=159.3

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQNG  124 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  124 (570)
                      |...+..|++++|+..|+.+++.+|  .+..+|..++.++...|++++|+..|+++++.  .|+ ...+..+...+..  
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~--   99 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTN--   99 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccc--
Confidence            4445568899999999999999999  78999999999999999999999999999987  454 3344444444444  


Q ss_pred             CcchhhCCHHHHHHHHHHHHhcCCCCCcch----------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc
Q 038914          125 SSLCVESRIMEAAALFTKLRVFGCEPDVFT----------------YNTLINGLCRTGHTIVALNLFEEMANGNGEIGVV  188 (570)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  188 (570)
                           .|++++|...++++....  |+...                ....+..+...+.+.+|...|+++.+.++     
T Consensus       100 -----~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-----  167 (323)
T d1fcha_         100 -----ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-----  167 (323)
T ss_dssp             -----TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-----
T ss_pred             -----cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-----
Confidence                 569999999999988753  22110                11112223344566677777777766442     


Q ss_pred             cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 038914          189 CKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTV  268 (570)
Q Consensus       189 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  268 (570)
                      ...+...+..+...+...|++++|+..|++..... +-+..+|..+..++...|++++|++.|+++++... -+..++..
T Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~  245 (323)
T d1fcha_         168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYN  245 (323)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHH
Confidence            12345666777777777777777777777776653 23566777777777777777777777777776432 24556777


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHH
Q 038914          269 IMDELCKNGKMDGASRLLELMIL  291 (570)
Q Consensus       269 l~~~~~~~g~~~~a~~~~~~~~~  291 (570)
                      ++.+|.+.|++++|+..|++.++
T Consensus       246 lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         246 LGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777777777777777665

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.4e-14  Score=128.53  Aligned_cols=243  Identities=13%  Similarity=-0.007  Sum_probs=115.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038914          234 LICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGK  313 (570)
Q Consensus       234 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  313 (570)
                      ....+...|++++|+..|+++++..+. +..+|..++.++...|++++|...+.++++.. +-+...+..++.++...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            344445555555555555555554211 34445555555555555555555555554432 1233444444455555555


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 038914          314 IDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDE  393 (570)
Q Consensus       314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  393 (570)
                      +++|.+.++.+...... ....+........                    ..+.......+..+...+.+.++...+..
T Consensus       103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             HHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccc-hHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            55555555554443210 0000000000000                    00000001111122233445555555555


Q ss_pred             HHhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 038914          394 MRRNHV-AANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD  472 (570)
Q Consensus       394 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  472 (570)
                      ..+... ..+..++..+...+...|++++|...++++.... +.+..+|..++.+|...|++++|.+.|+++++.. +-+
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~  239 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY  239 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence            444221 2234455555666666666666666666665544 3445566666666666666666666666666532 223


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038914          473 VVTYNIMIHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      ..+|..++.+|...|++++|+..|+++++
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45566666666666666666666666554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=4.2e-13  Score=122.36  Aligned_cols=266  Identities=8%  Similarity=-0.007  Sum_probs=189.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH----HHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcch
Q 038914           79 NILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAY----NILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFT  154 (570)
Q Consensus        79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  154 (570)
                      ..++......+..++|++++++++..  .|+..+.    ..++..+...+..+...|++++|+..++++++.. +.+..+
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~  109 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT  109 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence            33333333444458999999999876  5665432    2344455555666777788999999999998874 336667


Q ss_pred             HHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCcccCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          155 YNTLINGLCRTG--HTIVALNLFEEMANGNGEIGVVCKPDTVTYT-TIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       155 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      |..+..++...+  ++++|+..++++...+       +++...+. .....+...+..++|++.++.+...+. -+...|
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~  181 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW  181 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHH
Confidence            777877777765  4789999999999875       45566654 455677788999999999999988754 378889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038914          232 TSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLT  311 (570)
Q Consensus       232 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  311 (570)
                      ..+..++...|++++|...+......  .|+   .......+...+..+++...+....... +++...+..++..+...
T Consensus       182 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~  255 (334)
T d1dcea1         182 HYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVL  255 (334)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Confidence            99999999999988876655544432  111   1223344556677778888888777663 33445555666777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          312 GKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK  362 (570)
Q Consensus       312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  362 (570)
                      ++.++|...+.+..... +.+...+..++.++...|++++|++.++++++.
T Consensus       256 ~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         256 QSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            88888888888877664 235567777888888888888888888888875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2.8e-11  Score=111.47  Aligned_cols=274  Identities=12%  Similarity=0.036  Sum_probs=177.3

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPP---VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGS  125 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  125 (570)
                      .+..|++++|+..|+.+++..|..+.   ..++..++.++...|++++|+..|+++....  +........+..+...+.
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHH
Confidence            34577999999999999998883222   3467788999999999999999999987652  111112222333334444


Q ss_pred             cchhhCCHHHHHHHHHHHHhc----CCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHH
Q 038914          126 SLCVESRIMEAAALFTKLRVF----GCEPD---VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTT  198 (570)
Q Consensus       126 ~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (570)
                      .+...|++..+...+.+....    +....   ...+..+...+...|+++.+...++.........+  .......+..
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~  177 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--PQQQLQCLAM  177 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--GGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh--hhhHHHHHHH
Confidence            566678999999998877642    11111   12455567778889999999999988887543221  1223455666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHH
Q 038914          199 IIDGLCKKGFVDKAKELFLKMKDEN--INP----NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPN---VVTFTVI  269 (570)
Q Consensus       199 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  269 (570)
                      +...+...+....+...+.+.....  ...    ....+..+...+...|++++|...+..........+   ...+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            7777888888888888877655421  111    123445556677778888888888877665432221   2334556


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          270 MDELCKNGKMDGASRLLELMILR----GVKPD-TSTYNTLIDGYCLTGKIDRARELFVSMES  326 (570)
Q Consensus       270 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  326 (570)
                      ..++...|++++|...++++...    +..|+ ...+..+..+|...|++++|.+.+++...
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777888888888887776532    22222 23555566677777777777777766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.6e-10  Score=103.24  Aligned_cols=132  Identities=5%  Similarity=-0.045  Sum_probs=59.7

Q ss_pred             HHHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCC-HhhHHH
Q 038914           38 LRERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH-YDTVLSLFKRLNSTGLFPD-LYAYNI  115 (570)
Q Consensus        38 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~-~~~~~~  115 (570)
                      ..+++...|....+.+.+++|+..++.+++.+|  .+..+|+..+.++...|+ +++|+..++++++.  .|+ ...+..
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP--~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~  117 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHH  117 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHH
Confidence            334444444444445555555555555555555  455555555555554432 45555555555444  222 222222


Q ss_pred             HHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038914          116 LINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG  181 (570)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  181 (570)
                      .-..+..       .|++++|+..++++++.. +.+..+|..++.++...|++++|++.++++.+.
T Consensus       118 ~~~~~~~-------l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         118 RRVLVEW-------LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHHHHH-------HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HhHHHHh-------hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2222222       234444444444444432 113344444444444444444444444444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.7e-11  Score=105.80  Aligned_cols=235  Identities=9%  Similarity=0.050  Sum_probs=180.7

Q ss_pred             CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCC
Q 038914           73 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPD  151 (570)
Q Consensus        73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (570)
                      ....+++.++.++.+.+.+++|+++++++++.  .|+.. .|.....++...+      +++++|+..++++++.. +-+
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~------~~~~eal~~~~~al~~~-p~~  111 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQ------KDLHEEMNYITAIIEEQ-PKN  111 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhC------cCHHHHHHHHHHHHHHH-Hhh
Confidence            45677888888899999999999999999998  56554 4455444555544      46999999999999875 336


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      ..+|+.+..++.+.|++++|+..++++.+.+       +.+..+|..++.++...|++++|++.++++++.+.. +...|
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~  183 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVW  183 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHH
Confidence            7889999999999999999999999999976       567899999999999999999999999999998865 88889


Q ss_pred             HHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHH
Q 038914          232 TSLICGFCYAND------WNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGVKP-DTSTYNTL  304 (570)
Q Consensus       232 ~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l  304 (570)
                      +.+..++...+.      +++|+..+..+++..+ .+...|..+...+.. ...+++...++...+....+ +...+..+
T Consensus       184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  261 (315)
T d2h6fa1         184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFL  261 (315)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             HHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence            888877777665      6789999998888643 366777777665544 45688888888887653332 34455666


Q ss_pred             HHHHHhc--CC-------HHHHHHHHHHHHh
Q 038914          305 IDGYCLT--GK-------IDRARELFVSMES  326 (570)
Q Consensus       305 ~~~~~~~--~~-------~~~a~~~~~~~~~  326 (570)
                      +..|...  +.       +++|..+++.+..
T Consensus       262 ~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~  292 (315)
T d2h6fa1         262 VDIYEDMLENQCDNKEDILNKALELCEILAK  292 (315)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6666432  32       4455555555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3.4e-09  Score=97.04  Aligned_cols=190  Identities=8%  Similarity=-0.042  Sum_probs=94.1

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC----ChhhHHH
Q 038914          374 LFLGLFEVHQVEHALKLFDEMRRNH----VAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKY--EL----NIVSYNC  443 (570)
Q Consensus       374 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~  443 (570)
                      +...+...|+++.+...+.......    .......+......+...++...+...+........  ..    ....+..
T Consensus       139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  218 (366)
T d1hz4a_         139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV  218 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence            3444455555555555554444321    111222333344445555666665555554432110  00    1123344


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHH
Q 038914          444 LIDGLCKHGRLEIAWELFSSLPRVGLMAD---VVTYNIMIHGLCNDGQMDKAHGLFLDMEA----KGLEPN-FVIFNTLM  515 (570)
Q Consensus       444 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~  515 (570)
                      +...+...|++++|...++.........+   ...+..++.++...|++++|...++++..    .+..|+ ..++..+.
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  298 (366)
T d1hz4a_         219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN  298 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence            45556666677777666666554321111   22344556666667777777776666543    122332 33455566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHccCcccccc
Q 038914          516 LGFIRNNETSKVIELLHRMDMR----NVM----PDASTLSIVVDLLVKNEISLNSI  563 (570)
Q Consensus       516 ~~~~~~g~~~~a~~~~~~~~~~----~~~----p~~~~~~~l~~~~~~~g~~~~a~  563 (570)
                      .+|...|++++|.+.+++.++.    |..    -....+..++..+...|+.+++.
T Consensus       299 ~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         299 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            6667777777777776665421    211    01233444555566666666553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=9.5e-12  Score=113.19  Aligned_cols=266  Identities=8%  Similarity=-0.036  Sum_probs=196.2

Q ss_pred             ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHH----------hcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh
Q 038914           54 TPNDALCVFDYMLNMRPSRPPVTSFNILFGCLA----------KTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINCFLQ  122 (570)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  122 (570)
                      ..++|+.+++.+++.+|  .+..+|+.....+.          ..|++++|+.+++.+++.  .|+ ...+......+..
T Consensus        44 ~~~~al~~~~~~l~~~P--~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          44 LDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHH
Confidence            45899999999999999  78888876555443          344588999999999987  453 3444444445544


Q ss_pred             cCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHH
Q 038914          123 NGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYN-TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIID  201 (570)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (570)
                      .+     .+++++|+..+++++... +++...+. .....+...+.+++|+..++.+...+       +-+..+|..+..
T Consensus       120 ~~-----~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-------p~~~~a~~~l~~  186 (334)
T d1dcea1         120 LP-----EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSC  186 (334)
T ss_dssp             CS-----SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHH
T ss_pred             hc-----cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-------CCCHHHHHHHHH
Confidence            43     457899999999998874 33455544 45567778899999999999999876       567889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          202 GLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDG  281 (570)
Q Consensus       202 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  281 (570)
                      ++...|++++|...+......    ... ...+...+...+..+++...+....... +++...+..++..+...|++.+
T Consensus       187 ~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~  260 (334)
T d1dcea1         187 LLPQLHPQPDSGPQGRLPENV----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE  260 (334)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence            999999999887766655443    111 1223344566778888888888887764 3355666677778888899999


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914          282 ASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYC  344 (570)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  344 (570)
                      |...+.+....+ +.+...+..++.++...|++++|...++++.+.+ |....-|+.+...+.
T Consensus       261 a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~  321 (334)
T d1dcea1         261 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence            999999887663 2245677888899999999999999999999874 223445565655444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=6.3e-10  Score=99.38  Aligned_cols=233  Identities=10%  Similarity=0.081  Sum_probs=127.4

Q ss_pred             hhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHH
Q 038914           55 PNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIM  134 (570)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  134 (570)
                      .+.+..+|++++...|  .++..|...+..+...++.                            ....|......+..+
T Consensus        32 ~~Rv~~vyerAl~~~~--~~~~lW~~y~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~   81 (308)
T d2onda1          32 TKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKL----------------------------LAEKGDMNNAKLFSD   81 (308)
T ss_dssp             HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH----------------------------HHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCch----------------------------HHHHHHHhhcccchH
Confidence            4567778999998887  6778887766654332211                            000111111223455


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCC-hhhHHHHHHHHHhcCCHHHHH
Q 038914          135 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPD-TVTYTTIIDGLCKKGFVDKAK  213 (570)
Q Consensus       135 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~  213 (570)
                      +|..+|++.+....+.+...|..++..+.+.|+++.|..+|+++.+..       +.+ ...|...+..+.+.|+++.|.
T Consensus        82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-------~~~~~~~w~~~~~~~~~~~~~~~ar  154 (308)
T d2onda1          82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-------cCChHHHHHHHHHHHHHcCChHHHH
Confidence            566666665543223333445555555666666666666666666543       112 334566666666666666666


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 038914          214 ELFLKMKDENINPNAVTYTSLICG-FCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                      ++|+++.+.+. .+...|...+.. +...|+.+.|..+|+.+... .+.+...+...+......|+++.|..+|++.+..
T Consensus       155 ~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         155 MIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            66666655432 233334333332 23345666666666666654 2224555666666666666666666666666554


Q ss_pred             C-CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          293 G-VKPD--TSTYNTLIDGYCLTGKIDRARELFVSMES  326 (570)
Q Consensus       293 ~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  326 (570)
                      . ..|+  ...|...+..-...|+.+.+..+++++.+
T Consensus       233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2 1221  23555555555566666666666666544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=2.3e-09  Score=95.67  Aligned_cols=150  Identities=13%  Similarity=0.031  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 038914          315 DRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHALKLFDEM  394 (570)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  394 (570)
                      ++|..++++..+...+.+...|...+..+...|+++.|..+|++++..........+...+..+.+.|+.+.|..+|+.+
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44444555544432233344444444444455555555555555444321111223344444444444444444444444


Q ss_pred             HhCCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          395 RRNHVAANTYIYTTFIDG-LCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       395 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .+.. +.+...+...+.. +...|+.+.|..+|+.+.... +.+...|...+..+...|+++.|..+|++.++
T Consensus       161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4332 1122222222211 122344444444444444332 33344444444444444444444444444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.6e-10  Score=99.36  Aligned_cols=220  Identities=11%  Similarity=-0.020  Sum_probs=144.0

Q ss_pred             hCCHHHHHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc
Q 038914          130 ESRIMEAAALFTKLRVFGCEP---DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK  206 (570)
Q Consensus       130 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  206 (570)
                      ..+.+.++.-+++++......   ...++..++.+|.+.|++++|+..|+++++.+       +.+..+|..++.++.+.
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~   84 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQA   84 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHH
Confidence            345667777777777542111   23467778889999999999999999999875       45688999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038914          207 GFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLL  286 (570)
Q Consensus       207 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  286 (570)
                      |++++|++.|+++.+... -+..++..+..++...|++++|...++..++... .+......+...+...+..+.+..+.
T Consensus        85 g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
T d1xnfa_          85 GNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLK  162 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999998643 3677888899999999999999999999888642 24444444444555556555555555


Q ss_pred             HHHHHCCCCCCHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          287 ELMILRGVKPDTSTYNTLIDGYCLTGK----IDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSK  362 (570)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  362 (570)
                      .......  ++...+. ++..+.....    .+.+...+....... +....+|..+..++...|++++|++.|++.+..
T Consensus       163 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         163 QHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            5555432  2222222 2222222211    112221111111110 112345666777888888888888888888765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.7e-09  Score=92.68  Aligned_cols=96  Identities=9%  Similarity=-0.087  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038914          300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLF  379 (570)
Q Consensus       300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  379 (570)
                      ++..++.+|.+.|++++|+..|++.+... +.+..+|..+..++...|++++|+..|+++++.... +..++..+...+.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            34444455555555555555555555443 234455555555555555555555555555553211 2334444455555


Q ss_pred             hcCCHHHHHHHHHHHHhC
Q 038914          380 EVHQVEHALKLFDEMRRN  397 (570)
Q Consensus       380 ~~~~~~~a~~~~~~~~~~  397 (570)
                      ..|++++|...++...+.
T Consensus       117 ~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh
Confidence            555555555555554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=1.5e-08  Score=89.22  Aligned_cols=166  Identities=11%  Similarity=-0.010  Sum_probs=107.9

Q ss_pred             cchhhCCHHHHHHHHHHHHhcC----CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHH
Q 038914          126 SLCVESRIMEAAALFTKLRVFG----CEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTII  200 (570)
Q Consensus       126 ~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  200 (570)
                      .+...|++++|...|.++.+..    .++ -..+|..+..+|.+.|++++|++.+++........+. ......++..++
T Consensus        46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~  124 (290)
T d1qqea_          46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELG  124 (290)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-chhHHHHHHHHH
Confidence            3445679999999999987641    111 1346888999999999999999999988764311100 111244566677


Q ss_pred             HHHHh-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHH
Q 038914          201 DGLCK-KGFVDKAKELFLKMKDE----NINP-NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNV------VTFTV  268 (570)
Q Consensus       201 ~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~  268 (570)
                      ..|.. .|++++|++.+++..+.    +.++ ...++..+...+...|++++|+..|+++.........      ..+..
T Consensus       125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (290)
T d1qqea_         125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (290)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence            67644 58899999988877542    1111 1345667778888888888888888887764322111      12233


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC
Q 038914          269 IMDELCKNGKMDGASRLLELMILR  292 (570)
Q Consensus       269 l~~~~~~~g~~~~a~~~~~~~~~~  292 (570)
                      .+..+...|+++.|...+++..+.
T Consensus       205 ~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         205 KGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            444556677777777777776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.9e-08  Score=78.58  Aligned_cols=139  Identities=12%  Similarity=-0.028  Sum_probs=76.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      .+...|+++.|++.|..+.    +++..+|..++.+|...|++++|...|++.++.. +.+...|..++.++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            3445566666666555432    4455555556666666666666666666665532 2234555566666666666666


Q ss_pred             HHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038914          492 AHGLFLDMEAKG------------L--EPN-FVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVK  555 (570)
Q Consensus       492 A~~~~~~~~~~~------------~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  555 (570)
                      |++.|++.+...            .  ..+ ..++..+..++...|++++|.+.+++.......++.......+..+.+
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~  167 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK  167 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence            666666554320            0  011 234555666677777777777777777654434444444444444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=8.5e-09  Score=90.89  Aligned_cols=214  Identities=9%  Similarity=-0.040  Sum_probs=137.5

Q ss_pred             HHHhhhcCCCCCCCCChhHHHHHHHHHHhcCCC----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 038914           39 RERFKSSGEGDITTITPNDALCVFDYMLNMRPS----RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYN  114 (570)
Q Consensus        39 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  114 (570)
                      .+.+...|......|++++|+..|.++......    +....+|..++.+|.+.|++++|++.|+++....  +......
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~--~~~~~~~  114 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--THRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh--hhcccch
Confidence            344555555566678999999999999875221    1234678999999999999999999999987652  2222222


Q ss_pred             HHHHHHHhcCCcch-hhCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc
Q 038914          115 ILINCFLQNGSSLC-VESRIMEAAALFTKLRVF----GCEP-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVV  188 (570)
Q Consensus       115 ~~l~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  188 (570)
                      .....+...|..+. ..|++++|+..|++..+.    +.++ ...++..++..+.+.|++++|+..|+++.......+. 
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~-  193 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-  193 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh-
Confidence            22333333333332 347999999999988653    1111 1235778899999999999999999999886532111 


Q ss_pred             cCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 038914          189 CKPD-TVTYTTIIDGLCKKGFVDKAKELFLKMKDENIN-PN---AVTYTSLICGFCY--ANDWNEAKHLFIEMM  255 (570)
Q Consensus       189 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~~  255 (570)
                      .... ...+...+.++...|+++.|...+++..+.... ++   ......++.++-.  .+.+++|+..|+.+.
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            0111 123455666777889999999999998875321 11   2233445555443  234666666665443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.6e-08  Score=79.65  Aligned_cols=122  Identities=11%  Similarity=-0.008  Sum_probs=88.7

Q ss_pred             chhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhc
Q 038914          127 LCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKK  206 (570)
Q Consensus       127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  206 (570)
                      +...|++++|++.|+++.    +++..+|..++.++...|++++|++.|+++.+.+       +.+...|..+..++.+.
T Consensus        15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHHHHHHHHhh
Confidence            344578888888887642    4566778888888888899999999999988876       45677888888888889


Q ss_pred             CCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038914          207 GFVDKAKELFLKMKDENIN--------------P-NAVTYTSLICGFCYANDWNEAKHLFIEMMDQGV  259 (570)
Q Consensus       207 g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  259 (570)
                      |++++|++.|++.......              . ...++..+..++...|++++|.+.+........
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999998888887653110              0 023455566667777777777777776666433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.74  E-value=2e-05  Score=67.64  Aligned_cols=80  Identities=13%  Similarity=-0.078  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCCh
Q 038914          418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQM  489 (570)
Q Consensus       418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~  489 (570)
                      +...+...++...+.+   +......+...|..    ..++++|...|+...+.|   ++..+..|+.+|..    ..+.
T Consensus       161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~  234 (265)
T d1ouva_         161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE  234 (265)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred             ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence            3444444444444322   33333344434433    345555555555555543   33344444444443    2245


Q ss_pred             hHHHHHHHHHHHCC
Q 038914          490 DKAHGLFLDMEAKG  503 (570)
Q Consensus       490 ~~A~~~~~~~~~~~  503 (570)
                      ++|.++|++..+.|
T Consensus       235 ~~A~~~~~kAa~~g  248 (265)
T d1ouva_         235 KQAIENFKKGCKLG  248 (265)
T ss_dssp             TTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCc
Confidence            55555555555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.1e-08  Score=76.86  Aligned_cols=122  Identities=9%  Similarity=0.022  Sum_probs=91.7

Q ss_pred             HhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 038914           41 RFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYAYNILINC  119 (570)
Q Consensus        41 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~  119 (570)
                      .+...|...++.|++++|+..|+++++.+|  .+..+|..++.++...|++++|++.|+++++.  .|+ ...+..+..+
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~   87 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHH
Confidence            344566677789999999999999999999  89999999999999999999999999999987  454 3455555555


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChhHHHHH
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLING--LCRTGHTIVALNL  174 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~  174 (570)
                      +...       |++++|...+++..... +.+..++..+..+  ..+.+.+++|+..
T Consensus        88 ~~~~-------g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          88 NMAL-------GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHT-------TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHc-------CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5554       69999999999999874 2234444444333  2333445555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.7e-07  Score=67.94  Aligned_cols=88  Identities=16%  Similarity=0.045  Sum_probs=39.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhH
Q 038914          412 GLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDK  491 (570)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  491 (570)
                      .+...|++++|+..|+++++.. |.+...|..+..+|...|++++|+..+..+++.+ +.+...|..++.++...|++++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence            3444444444444444444443 3344444444444444444444444444444432 2233444444444444444444


Q ss_pred             HHHHHHHHHH
Q 038914          492 AHGLFLDMEA  501 (570)
Q Consensus       492 A~~~~~~~~~  501 (570)
                      |+..|++.++
T Consensus        90 A~~~~~~a~~   99 (117)
T d1elwa_          90 AKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            4444444444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.71  E-value=2.2e-05  Score=67.47  Aligned_cols=222  Identities=12%  Similarity=-0.047  Sum_probs=132.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038914          300 TYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCK----TKDVEEGLNLYRKMLSKGIRPTVVTYHTLF  375 (570)
Q Consensus       300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  375 (570)
                      .+..+...+...+++++|+++|++..+.|   +...+..|..+|..    ..+...|...+......+   +......+.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            33444444555555555555555555543   33444444444443    345555665555555543   222222222


Q ss_pred             HHHh----hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038914          376 LGLF----EVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCK----NGYIVKAVELFRTLRILKYELNIVSYNCLIDG  447 (570)
Q Consensus       376 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  447 (570)
                      ..+.    ...+.+.|...++...+.+.   ......+...+..    ......+...+......   .+...+..+...
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence            2222    23455666666666655442   1222222222222    34566666776666553   455666677777


Q ss_pred             HHh----cCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038914          448 LCK----HGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFI  519 (570)
Q Consensus       448 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  519 (570)
                      |..    ..+...+...++...+.|   +......++..|..    ..++++|+.+|++..+.|   ++..+..|...|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~  225 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence            765    456778888888887743   56666677777765    568999999999999875   5667777877776


Q ss_pred             h----cCCHHHHHHHHHHHHhCCC
Q 038914          520 R----NNETSKVIELLHRMDMRNV  539 (570)
Q Consensus       520 ~----~g~~~~a~~~~~~~~~~~~  539 (570)
                      +    ..+.++|.++|++..+.|.
T Consensus       226 ~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         226 NGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             cCCCCccCHHHHHHHHHHHHHCcC
Confidence            5    4478999999999998773

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6.5e-09  Score=99.09  Aligned_cols=228  Identities=8%  Similarity=-0.093  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHH
Q 038914           57 DALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEA  136 (570)
Q Consensus        57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A  136 (570)
                      +|.+.|+++++..|  ....++..++.++..+|++++|   |++++..  .|+......+...+.+        ..+..+
T Consensus         4 eA~q~~~qA~~l~p--~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw~--------~~y~~~   68 (497)
T d1ya0a1           4 QSAQYLRQAEVLKA--DMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLWN--------HAFKNQ   68 (497)
T ss_dssp             HHHHHHHHHHHHHG--GGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHHH--------HHTHHH
T ss_pred             HHHHHHHHHHHcCC--CCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHHH--------HHHHHH
Confidence            68899999999888  6777888899999999988876   7777654  3432211111111111        134566


Q ss_pred             HHHHHHHHhcCCCCCcchHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHH
Q 038914          137 AALFTKLRVFGCEPDVFTYNTL--INGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKE  214 (570)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  214 (570)
                      ++.++...+....++..-....  .......+.++.|+..++...+..       +++...+..+...+.+.|+.++|..
T Consensus        69 ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-------~~~~~~~~~lg~~~~~~~~~~~A~~  141 (497)
T d1ya0a1          69 ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-------LPCRVKSSQLGIISNKQTHTSAIVK  141 (497)
T ss_dssp             HHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred             HHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------hhhHHHHHHhHHHHHhCCCHHHHHH
Confidence            7777776654333333222221  122233566777777666665543       4556778888888899999999988


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 038914          215 LFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNGKMDGASRLLELMILRGV  294 (570)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  294 (570)
                      .+.......   ...++..+...+...|++++|...|.+..+..+ -+...|+.++..+...|+..+|...|.+.+... 
T Consensus       142 ~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-  216 (497)
T d1ya0a1         142 PQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-  216 (497)
T ss_dssp             -CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-
T ss_pred             HHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence            887765531   235677888999999999999999999988643 356789999999999999999999999998764 


Q ss_pred             CCCHhhHHHHHHHHHhc
Q 038914          295 KPDTSTYNTLIDGYCLT  311 (570)
Q Consensus       295 ~~~~~~~~~l~~~~~~~  311 (570)
                      +|-..++..|...+.+.
T Consensus       217 ~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         217 FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             BCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            55667777777766543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.9e-07  Score=66.51  Aligned_cols=105  Identities=9%  Similarity=-0.088  Sum_probs=88.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038914          443 CLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNN  522 (570)
Q Consensus       443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  522 (570)
                      .-+..+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..+.++++.+ +.+...|..+..++...|
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence            34677889999999999999999863 4466789999999999999999999999999863 457889999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 038914          523 ETSKVIELLHRMDMRNVMPD-ASTLSIVVD  551 (570)
Q Consensus       523 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~  551 (570)
                      ++++|+..+++.++.  .|+ ...+..+..
T Consensus        86 ~~~~A~~~~~~a~~~--~p~~~~~~~~l~~  113 (117)
T d1elwa_          86 RFEEAKRTYEEGLKH--EANNPQLKEGLQN  113 (117)
T ss_dssp             CHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            999999999999965  455 444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.7e-07  Score=70.64  Aligned_cols=118  Identities=10%  Similarity=-0.000  Sum_probs=85.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcC
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDG  487 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  487 (570)
                      .....|.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|...|+++++.. +.+..+|..++.++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            34556778888888888888888876 6678888888888888899999999988888753 334578888888888889


Q ss_pred             ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCCHHHHHH
Q 038914          488 QMDKAHGLFLDMEAKGLEPN-FVIFNTLMLG--FIRNNETSKVIE  529 (570)
Q Consensus       488 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~  529 (570)
                      ++++|...++++...  .|+ ...+..+..+  ....+.++++..
T Consensus        93 ~~~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          93 KFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998888888874  343 4444444333  223334444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.5e-08  Score=76.35  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             hhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038914           42 FKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFL  121 (570)
Q Consensus        42 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  121 (570)
                      +...|......|++++|+..|+.+++.+|  .+..++..++.++.+.|++++|++.+++++.... .+...+..+..++.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~-~~~~~~~~~a~~~~   83 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            34456667778999999999999999999  7899999999999999999999999999987631 13344555667777


Q ss_pred             hcCCcchhhCCHHHHHHHHHHHHhc
Q 038914          122 QNGSSLCVESRIMEAAALFTKLRVF  146 (570)
Q Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~  146 (570)
                      ..|..+...+++++|+..|++.+..
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7787888888999999999988765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=6.2e-07  Score=73.83  Aligned_cols=99  Identities=12%  Similarity=-0.052  Sum_probs=66.7

Q ss_pred             CChhhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038914          366 PTVVTYHTLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLI  445 (570)
Q Consensus       366 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  445 (570)
                      |+...+...+..+.+.|++++|+..|..+.+.. +.+...|..+..+|.+.|++++|+..|+.+++.. |-+..+|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            455566666677777777777777776666554 4456666667777777777777777777776554 44556666677


Q ss_pred             HHHHhcCCHHHHHHHHHhhhh
Q 038914          446 DGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .+|...|++++|...|+++.+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            777777777777777776655

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=8e-07  Score=73.11  Aligned_cols=98  Identities=12%  Similarity=-0.082  Sum_probs=51.4

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVT  230 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  230 (570)
                      +...+...+..+.+.|++++|+..|++++..+       +.+...|..++.+|.+.|++++|++.|++.++.. +-+..+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a   74 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKA   74 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHH
Confidence            33344445555555555555555555555543       3345555555555555555555555555555432 113445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038914          231 YTSLICGFCYANDWNEAKHLFIEMMD  256 (570)
Q Consensus       231 ~~~l~~~~~~~~~~~~a~~~~~~~~~  256 (570)
                      |..+..+|...|++++|+..|+++..
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555555555555555555555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.48  E-value=7.7e-07  Score=64.77  Aligned_cols=91  Identities=8%  Similarity=-0.066  Sum_probs=66.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038914          156 NTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLI  235 (570)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  235 (570)
                      ..++..+.+.|++++|+..|+++...+       +.+..+|..+..++.+.|++++|+..|++..+.. +.+..+|..+.
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la   91 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA   91 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccc-------cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHH
Confidence            345666777788888888888877754       3457777777777777888888888887777753 33567777777


Q ss_pred             HHHHhcCCHHHHHHHHHHH
Q 038914          236 CGFCYANDWNEAKHLFIEM  254 (570)
Q Consensus       236 ~~~~~~~~~~~a~~~~~~~  254 (570)
                      .+|...|++++|++.+++.
T Consensus        92 ~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          92 VSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHH
Confidence            7777777777777777765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.8e-07  Score=65.53  Aligned_cols=93  Identities=11%  Similarity=0.010  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhhhhCCCCCC-hhhHHHHHHHH
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGR---LEIAWELFSSLPRVGLMAD-VVTYNIMIHGL  483 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~  483 (570)
                      .++..+...+++++|.+.|++....+ +.+..++..++.++.+.++   +++|+.+++++...+..|+ ..+|..++.+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34444555556666666666655554 4455555555555554333   3345555555554321122 12455555556


Q ss_pred             HhcCChhHHHHHHHHHHH
Q 038914          484 CNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       484 ~~~g~~~~A~~~~~~~~~  501 (570)
                      ...|++++|++.|+++++
T Consensus        83 ~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            666666666666666555

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.46  E-value=8.9e-07  Score=64.44  Aligned_cols=89  Identities=8%  Similarity=-0.021  Sum_probs=50.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038914          444 LIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNE  523 (570)
Q Consensus       444 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  523 (570)
                      ++..+.+.|++++|...|+++++.. +-+..+|..++.++...|++++|+..++++++.. +.+..+|..+..+|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            3445555666666666666655532 2234555666666666666666666666665531 2235555566666666666


Q ss_pred             HHHHHHHHHHH
Q 038914          524 TSKVIELLHRM  534 (570)
Q Consensus       524 ~~~a~~~~~~~  534 (570)
                      +++|++.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=7.3e-07  Score=65.70  Aligned_cols=101  Identities=17%  Similarity=0.106  Sum_probs=81.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 038914          442 NCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ---MDKAHGLFLDMEAKGLEPN-FVIFNTLMLG  517 (570)
Q Consensus       442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~  517 (570)
                      ..++..+...+++++|.+.|+..+..+ +.+..++..++.++.+.++   +++|+.+++++...+..|+ ..++..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            467788889999999999999999864 5567889999999987654   4569999999987532233 2477889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038914          518 FIRNNETSKVIELLHRMDMRNVMPDAST  545 (570)
Q Consensus       518 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~  545 (570)
                      |.+.|++++|++.|+++++.  .|+..-
T Consensus        82 y~~~g~~~~A~~~~~~aL~~--~P~~~~  107 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT--EPQNNQ  107 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh--CcCCHH
Confidence            99999999999999999974  576443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.8e-07  Score=86.61  Aligned_cols=214  Identities=10%  Similarity=-0.019  Sum_probs=124.3

Q ss_pred             HHhhhcCCCCCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914           40 ERFKSSGEGDITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINC  119 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  119 (570)
                      ..+...|.....+|++++|   |++++..+|  ....+.+.....  -...+..+++.++...+....++.......+..
T Consensus        21 ~a~~~la~~~~~~~~l~ea---ye~~i~~dp--~~a~~~~~e~~L--w~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~   93 (497)
T d1ya0a1          21 DSKLGPAEVWTSRQALQDL---YQKMLVTDL--EYALDKKVEQDL--WNHAFKNQITTLQGQAKNRANPNRSEVQANLSL   93 (497)
T ss_dssp             CSSSCSSSSHHHHHHHHHH---HHHHHHHCH--HHHHHHTHHHHH--HHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHH
T ss_pred             HHHhhHHHHHHHHchHHHH---HHHHHHcCh--hhHHHHhHHHHH--HHHHHHHHHHHHHHhcccccCccHHHHHHHHHH
Confidence            3444456666667777766   888887776  333333222211  123356788888888876544544433332222


Q ss_pred             HHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914          120 FLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI  199 (570)
Q Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  199 (570)
                      +..     ...+.++.|+..+.+..... +++...+..+...+.+.|+.++|...++......        + ..++..+
T Consensus        94 ~l~-----~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~-~~~~~~L  158 (497)
T d1ya0a1          94 FLE-----AASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------C-QHCLVHL  158 (497)
T ss_dssp             HHH-----HHHHHHHHHHHHHTC--------------------------------CCHHHHHH--------H-HHHHHHH
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------H-HHHHHHH
Confidence            211     11345666666665544432 3356677888888999999999999888876532        2 4678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038914          200 IDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKNG  277 (570)
Q Consensus       200 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  277 (570)
                      +..+...|++++|+..|.+..... +.+...|+.|...+...|+..+|+..|.+.+... +|-..++..|...+.+..
T Consensus       159 G~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         159 GDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999874 3467899999999999999999999999998864 457778888887776543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=6.1e-06  Score=61.58  Aligned_cols=91  Identities=12%  Similarity=0.086  Sum_probs=47.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC--------hhhHHHH
Q 038914          408 TFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMAD--------VVTYNIM  479 (570)
Q Consensus       408 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~l  479 (570)
                      .+...+...|++++|+..|.++++.+ +.+...+..+..+|...|++++|...++++++.  .|+        ..+|..+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHH
Confidence            34445555566666666665555554 344555555555555666666666655555442  111        1233344


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 038914          480 IHGLCNDGQMDKAHGLFLDMEA  501 (570)
Q Consensus       480 ~~~~~~~g~~~~A~~~~~~~~~  501 (570)
                      +..+...+++++|+..|++.+.
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            4444555555555555555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.4e-06  Score=64.68  Aligned_cols=104  Identities=11%  Similarity=-0.052  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914           78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-------YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP  150 (570)
Q Consensus        78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  150 (570)
                      +...+..+.+.|++++|+..|.+++..-.....       .........+...+..+.+.|++++|+..+++.+... +.
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~   94 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN   94 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence            344555666666666666666666544111000       0001111222222333444567777777777777664 22


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      ++.++..++.++...|++++|+..|+.+.+.+
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            56667777777777777777777777777754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.6e-05  Score=60.62  Aligned_cols=76  Identities=13%  Similarity=-0.074  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGF  518 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~  518 (570)
                      +|+.+..+|.+.|++++|+..++..++.. +.+..++..++.+|...|++++|+..|+++++.  .| +..+...+..+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            45667777788888888888888887753 335677777888888888888888888888773  44 444444444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=1.4e-06  Score=66.72  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhh
Q 038914           51 TTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVE  130 (570)
Q Consensus        51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  130 (570)
                      +.+.+++|+..|+.+++.+|  .++.++..++.++...+++..+.+-                                .
T Consensus         9 r~~~fe~A~~~~e~al~~~P--~~~~~~~~~g~~l~~~~~~~~~~e~--------------------------------~   54 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDA--------------------------------K   54 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHH--------------------------------H
T ss_pred             HHccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHHHhhhhhhhhHH--------------------------------H
Confidence            34578999999999999999  8999999999998876665544331                                1


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCCCcccCCChhhHHHH
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG-----------HTIVALNLFEEMANGNGEIGVVCKPDTVTYTTI  199 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  199 (570)
                      +.+++|+..|+++++.+ +.+..+|..++.+|...|           .+++|.+.|+++...+        |+...+..-
T Consensus        55 ~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--------P~~~~~~~~  125 (145)
T d1zu2a1          55 QMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKS  125 (145)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--------CCHHHHHHH
Confidence            25566777777777664 235566777777766544           3567777787777743        554444433


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCC
Q 038914          200 IDGLCKKGFVDKAKELFLKMKDEN  223 (570)
Q Consensus       200 ~~~~~~~g~~~~a~~~~~~~~~~~  223 (570)
                      +..+      .+|.+++.++.+.|
T Consensus       126 L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1         126 LEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHH------HTHHHHHHHHHHSS
T ss_pred             HHHH------HHHHHHHHHHHHHh
Confidence            3332      45555555555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.18  E-value=1.2e-05  Score=62.16  Aligned_cols=104  Identities=15%  Similarity=0.017  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHh----hHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCC
Q 038914           78 FNILFGCLAKTKHYDTVLSLFKRLNSTGLF----PDLY----AYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCE  149 (570)
Q Consensus        78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (570)
                      +...+..+.+.|++++|+..|.+++..-..    ++..    .....+..+...|..+.+.|++++|+..++++++.+ +
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p   98 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K   98 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence            334445555666666666666666543111    1111    011122334444555666789999999999999875 4


Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          150 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      .++.+|..++.++...|++++|+..|+++.+.+
T Consensus        99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            477899999999999999999999999999965

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=0.0017  Score=56.43  Aligned_cols=146  Identities=13%  Similarity=0.086  Sum_probs=92.7

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038914          190 KPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVI  269 (570)
Q Consensus       190 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  269 (570)
                      .||..-...++..|.+.|.++.|..+|..+..         |..++..+.+.+++..|.+++.+.-      +..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV   75 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence            35555666788889999999999999986654         6778888889999999888876541      56688888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 038914          270 MDELCKNGKMDGASRLLELMILRGVKPDTSTYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILINGYCKTKDV  349 (570)
Q Consensus       270 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  349 (570)
                      ...+.+.....-+     .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence            8888877665443     22223334455666778888999999999999999876542 456777888888888764 3


Q ss_pred             HHHHHHHH
Q 038914          350 EEGLNLYR  357 (570)
Q Consensus       350 ~~A~~~~~  357 (570)
                      ++..+.++
T Consensus       149 ~kl~e~l~  156 (336)
T d1b89a_         149 QKMREHLE  156 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.17  E-value=1.1e-06  Score=74.75  Aligned_cols=124  Identities=9%  Similarity=0.026  Sum_probs=84.8

Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 038914           49 DITTITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLC  128 (570)
Q Consensus        49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  128 (570)
                      .++.|++++|+..|+.+++.+|  .+...+..++..+...|++++|++.|+.+.+.  .|+.......+.....      
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P--~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~------   75 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK------   75 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH------
T ss_pred             HHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH------
Confidence            3568999999999999999999  89999999999999999999999999999987  5655443333322211      


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038914          129 VESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN  182 (570)
Q Consensus       129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  182 (570)
                      ..+..+++...+......+.+++...+......+...|+.++|.+.++++.+..
T Consensus        76 a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          76 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            011222221111111111112222334445566778899999999999998865

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.12  E-value=2.1e-05  Score=61.94  Aligned_cols=120  Identities=12%  Similarity=-0.061  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCH----hhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCC
Q 038914           78 FNILFGCLAKTKHYDTVLSLFKRLNSTG---LFPDL----YAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEP  150 (570)
Q Consensus        78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  150 (570)
                      +...+..+.+.|++++|+..|++++..-   ...+.    ..-......+...+..+...|++++|+..+++.+... +.
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~   96 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA   96 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc
Confidence            4445566666777777777776665420   00000    0011112223333344455567777777777777764 33


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh
Q 038914          151 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK  205 (570)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  205 (570)
                      +..+|..++.++...|++++|+..|+++...+       |.+......+..+..+
T Consensus        97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQIFMCQKK  144 (168)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence            56667777777777777777777777777754       3344444444444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=3.8e-05  Score=60.70  Aligned_cols=126  Identities=10%  Similarity=0.031  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHH
Q 038914           77 SFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYN  156 (570)
Q Consensus        77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  156 (570)
                      .+...+..+...|++++|.+.|.+++..  .++...     .   ..       ...+.+...-..+...    ...++.
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~---~~-------~~~~w~~~~r~~l~~~----~~~a~~   71 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----D---DL-------RDFQFVEPFATALVED----KVLAHT   71 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----G---GG-------TTSTTHHHHHHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----c---cC-------cchHHHHHHHHHHHHH----HHHHHH
Confidence            4456667888899999999999999876  222110     0   00       0001111111122111    235677


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 038914          157 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKD-----ENINPNAVT  230 (570)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~  230 (570)
                      .++.++...|++++|+..++.+...+       +-+...|..++.+|...|+..+|++.|+++..     .|+.|...+
T Consensus        72 ~la~~~~~~g~~~~Al~~~~~al~~~-------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          72 AKAEAEIACGRASAVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            78888999999999999999999876       56788899999999999999999999988744     477777654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.12  E-value=0.0022  Score=55.70  Aligned_cols=136  Identities=14%  Similarity=0.073  Sum_probs=84.4

Q ss_pred             CCHhhHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 038914          108 PDLYAYNILINCFLQNGSSLCVESRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGV  187 (570)
Q Consensus       108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  187 (570)
                      |+......+...|.+.       |.++.|..+|..+         .-|..++..+.+.+++..|.+.+.+..        
T Consensus        12 ~n~~d~~~i~~~c~~~-------~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--------   67 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDE-------KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--------   67 (336)
T ss_dssp             C-----------------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------
T ss_pred             CCcCCHHHHHHHHHHC-------CCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--------
Confidence            4444444555555443       5888888888754         245577788888888888888776542        


Q ss_pred             ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 038914          188 VCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFT  267 (570)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  267 (570)
                          +..+|..+...+.+.....-+     .+.......+......++..|-..|.+++...+++..... ...+...++
T Consensus        68 ----~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~  137 (336)
T d1b89a_          68 ----STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFT  137 (336)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHH
T ss_pred             ----CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHH
Confidence                466888888888877665443     2222333346666677888888888889888888877654 244666777


Q ss_pred             HHHHHHHhcC
Q 038914          268 VIMDELCKNG  277 (570)
Q Consensus       268 ~l~~~~~~~g  277 (570)
                      .++..|++.+
T Consensus       138 ~L~~lyak~~  147 (336)
T d1b89a_         138 ELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhC
Confidence            7888777754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.09  E-value=5.1e-05  Score=58.44  Aligned_cols=74  Identities=9%  Similarity=-0.086  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPD-ASTLSIVV  550 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~  550 (570)
                      .+|..++.+|.+.|++++|++.++++++.. +.+..+|..++.++...|++++|+..|++.++.  .|+ ..+...+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~  142 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            366778888888888888888888888752 336778888888888888888888888888864  354 44444433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=8.3e-05  Score=58.70  Aligned_cols=132  Identities=8%  Similarity=0.020  Sum_probs=87.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC
Q 038914          409 FIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ  488 (570)
Q Consensus       409 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  488 (570)
                      ........|++++|...|.+.....  +.... .    . ...+.+  +...-..+..    .....+..++.++...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-~----~-~~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL-D----D-LRDFQF--VEPFATALVE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-G----G-GTTSTT--HHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc-c----c-CcchHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence            3455677888888888888887652  11110 0    0 000111  1111111111    123467778889999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHc
Q 038914          489 MDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD-----MRNVMPDASTLSIVVDLLVK  555 (570)
Q Consensus       489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~~l~~~~~~  555 (570)
                      +++|+..+++++... +-+...|..++.++...|+.++|++.|+++.     +.|+.|...+-...-.++..
T Consensus        83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~~  153 (179)
T d2ff4a2          83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ  153 (179)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhC
Confidence            999999999998852 3477889999999999999999999999974     36899998776655555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.02  E-value=2.8e-05  Score=61.28  Aligned_cols=64  Identities=11%  Similarity=-0.029  Sum_probs=34.3

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038914          193 TVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQ  257 (570)
Q Consensus       193 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  257 (570)
                      ...|..+..++.+.|++++|+..+.++++.. +.+..+|..+..++...|++++|+..|+.+++.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3344555555555555555555555555542 224555555555555555555555555555553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.00  E-value=0.00019  Score=56.17  Aligned_cols=93  Identities=13%  Similarity=-0.015  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 038914          440 SYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEP-NFVIFNTLMLGF  518 (570)
Q Consensus       440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~  518 (570)
                      +|+.+..+|.+.|++++|+..++.+++.. +.+..+|..++.++...|++++|...|++++..  .| +..+...+..+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            45566777777888888888888777753 445567777778888888888888888887774  44 444444444443


Q ss_pred             HhcCCH-HHHHHHHHHHH
Q 038914          519 IRNNET-SKVIELLHRMD  535 (570)
Q Consensus       519 ~~~g~~-~~a~~~~~~~~  535 (570)
                      ...+.. +...+.+.+|.
T Consensus       143 ~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            333333 23334444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.99  E-value=6.3e-05  Score=59.15  Aligned_cols=63  Identities=10%  Similarity=-0.073  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038914          474 VTYNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMR  537 (570)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  537 (570)
                      ..|..++.++.+.|++++|+..+.++++.. +.+..+|..+..++...|++++|+..|+++++.
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345555555666666666666666655531 224455555556666666666666666666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.99  E-value=1.5e-05  Score=60.74  Aligned_cols=115  Identities=9%  Similarity=-0.078  Sum_probs=67.6

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------CCHHHHHHHHHhhhhCCCCCChhhHHHHHHHH
Q 038914          414 CKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKH----------GRLEIAWELFSSLPRVGLMADVVTYNIMIHGL  483 (570)
Q Consensus       414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  483 (570)
                      .+.+.+++|...|+.+.+.. |.+..++..+..++...          +.+++|...|+++++.. +.+..+|..++.+|
T Consensus         8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            34455667777777766665 55566666666655532          34466777777776642 23446676777766


Q ss_pred             HhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038914          484 CNDG-----------QMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMDMRN  538 (570)
Q Consensus       484 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  538 (570)
                      ...|           .+++|.+.|+++++  +.|+...+...+..+      .+|.+++.++.+.|
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            5543           35677777777777  456655554333222      34556666655554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.85  E-value=3.8e-05  Score=64.99  Aligned_cols=50  Identities=22%  Similarity=0.226  Sum_probs=24.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038914          416 NGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPR  466 (570)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  466 (570)
                      .|++++|+..+++.++.. |.|...+..++..++..|++++|...++...+
T Consensus         9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345555555555544443 34444445555555555555555555555444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.80  E-value=3.4e-05  Score=59.80  Aligned_cols=99  Identities=15%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhcCCCCCC----------HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCHhh
Q 038914           46 GEGDITTITPNDALCVFDYMLNMRPSRPP----------VTSFNILFGCLAKTKHYDTVLSLFKRLNSTGL---FPDLYA  112 (570)
Q Consensus        46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~  112 (570)
                      |...+..|++++|+..|+++++..|..++          ..+|+.++.+|...|++++|+..++++++...   ......
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            44455678999999999999987663222          35788999999999999999999999886410   111111


Q ss_pred             HHHHHHHHHhcCCcchhhCCHHHHHHHHHHHH
Q 038914          113 YNILINCFLQNGSSLCVESRIMEAAALFTKLR  144 (570)
Q Consensus       113 ~~~~l~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (570)
                      ......++.+.|..+...|++++|+..|++.+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            11122233333344444455555555555544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.53  E-value=0.00064  Score=52.26  Aligned_cols=91  Identities=10%  Similarity=-0.007  Sum_probs=58.0

Q ss_pred             HHHHHhcCCHHHHHHHHHhhhhCCC-CC----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC-
Q 038914          445 IDGLCKHGRLEIAWELFSSLPRVGL-MA----------DVVTYNIMIHGLCNDGQMDKAHGLFLDMEAK-----GLEPN-  507 (570)
Q Consensus       445 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-  507 (570)
                      +..+...|++++|+..|++.++... .|          ....|+.++.+|...|++++|...+++.++.     ...++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            3344555666666666666654210 01          1245677777888888888888877776642     11222 


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          508 ----FVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       508 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                          ...+..+..+|...|++++|+..|++.+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                2245667788888888888888888876

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00038  Score=48.08  Aligned_cols=82  Identities=12%  Similarity=-0.040  Sum_probs=59.4

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038914          152 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTY  231 (570)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  231 (570)
                      ...+..++..+.+.|++.+|+..|+++.+..+...........++..|..++.+.|++++|++.++++++... -+..++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-~~~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc-CCHHHH
Confidence            3445578899999999999999999998753211111112256788899999999999999999999988642 245555


Q ss_pred             HHH
Q 038914          232 TSL  234 (570)
Q Consensus       232 ~~l  234 (570)
                      +.+
T Consensus        84 ~Nl   86 (95)
T d1tjca_          84 GNL   86 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0025  Score=43.68  Aligned_cols=59  Identities=5%  Similarity=-0.015  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038914          478 IMIHGLCNDGQMDKAHGLFLDMEAK-----GLEPN-FVIFNTLMLGFIRNNETSKVIELLHRMDM  536 (570)
Q Consensus       478 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  536 (570)
                      .++..+.+.|++++|+..|+++++.     ...++ ..++..+..++.+.|++++|+..++++++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            3444445555555555555444331     00111 23444455555555555555555555553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.02  E-value=0.015  Score=42.73  Aligned_cols=111  Identities=14%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccCCChhhHHHHHHHHHh----c
Q 038914          131 SRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCKPDTVTYTTIIDGLCK----K  206 (570)
Q Consensus       131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  206 (570)
                      .++++|+.+|++..+.|   +...+..|..  ....+.++|+.++++..+.+         +...+..|...|..    .
T Consensus         7 kd~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---------~~~a~~~Lg~~y~~g~~~~   72 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYVK   72 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSC
T ss_pred             cCHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---------chhhhhhHHHhhhhccccc
Confidence            47888888888887765   3344444432  23456778888888777654         45556666666554    3


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 038914          207 GFVDKAKELFLKMKDENINPNAVTYTSLICGFCY----ANDWNEAKHLFIEMMDQG  258 (570)
Q Consensus       207 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  258 (570)
                      .+.++|.++|++..+.|   ++.....|...|..    ..+.++|..+|+...+.|
T Consensus        73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            45677777777776654   34445555555544    345666666666666554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.95  E-value=0.016  Score=42.48  Aligned_cols=110  Identities=8%  Similarity=-0.013  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHh----cCChhHHH
Q 038914          418 YIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCN----DGQMDKAH  493 (570)
Q Consensus       418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  493 (570)
                      ++++|..+|++..+.+   +......|.  .....+.++|...+++..+.|   +......|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            4556666666665554   222222222  223456677777777766654   44445555555553    34677777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038914          494 GLFLDMEAKGLEPNFVIFNTLMLGFIR----NNETSKVIELLHRMDMRN  538 (570)
Q Consensus       494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  538 (570)
                      ++|++..+.|   ++.....|...|..    ..+.++|.+++++..+.|
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            7777777754   44555555555554    456777888887777666

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.32  Score=44.15  Aligned_cols=203  Identities=9%  Similarity=-0.054  Sum_probs=99.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhhcCCHHHH
Q 038914          312 GKIDRARELFVSMESNGCMHDVVSYSIL----INGYCKTKDVEEGLNLYRKMLSKGIRPTVVTYHTLFLGLFEVHQVEHA  387 (570)
Q Consensus       312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  387 (570)
                      .+.+.+...+......... +...+..+    .......+..+.+...+......+  .+.......+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence            4566666666665543211 22212211    122223455566666666655542  2333333344445556777777


Q ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 038914          388 LKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRV  467 (570)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  467 (570)
                      ...+..+... ......-..-+..++...|+.+.|...|..+..   .++  .|..|.  ..+.|..-       .+...
T Consensus       305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LA--a~~Lg~~~-------~~~~~  369 (450)
T d1qsaa1         305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVA--AQRIGEEY-------ELKID  369 (450)
T ss_dssp             HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHH--HHHTTCCC-------CCCCC
T ss_pred             HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHH--HHHcCCCC-------CCCcC
Confidence            7777665432 122333445566667777777777777777653   222  233321  12222210       00000


Q ss_pred             CCCCC-hhh-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          468 GLMAD-VVT-----YNIMIHGLCNDGQMDKAHGLFLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       468 ~~~~~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      .++.+ ...     -...+..+...|+...|...|..+...   .+......+.....+.|.++.|+....+..
T Consensus       370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            00000 000     112344556677777777777666543   244455556666667777777776665553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.62  Score=42.10  Aligned_cols=338  Identities=9%  Similarity=-0.009  Sum_probs=152.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038914          197 TTIIDGLCKKGFVDKAKELFLKMKDENINPNAVTYTSLICGFCYANDWNEAKHLFIEMMDQGVQPNVVTFTVIMDELCKN  276 (570)
Q Consensus       197 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (570)
                      ...+..+.+.+++...+..+.     ..+.+...-...+.+....|+.++|...+..+-..|.. ....+..+...+.+.
T Consensus        76 ~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~  149 (450)
T d1qsaa1          76 SRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS  149 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhc
Confidence            344566677777665443331     23345555566777777888888887777766655422 333444444444444


Q ss_pred             CChhHHH--HHHHHHHHCC-----------CCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038914          277 GKMDGAS--RLLELMILRG-----------VKPDT-STYNTLIDGYCLTGKIDRARELFVSMESNGCMHDVVSYSILING  342 (570)
Q Consensus       277 g~~~~a~--~~~~~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  342 (570)
                      |.+....  +-+..+...|           ++++. ......+.....   ...+...   ....  ..+......+..+
T Consensus       150 ~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~---~~~~--~~~~~~~~~~~~~  221 (450)
T d1qsaa1         150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTF---ARTT--GATDFTRQMAAVA  221 (450)
T ss_dssp             TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHH---HHHS--CCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHH---HhcC--CCChhhhHHHHHH
Confidence            4332211  1111111111           01111 111111111111   1111111   1111  1122222222222


Q ss_pred             HHh--cCCHHHHHHHHHHHHhCCCCCChhhHHH----HHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 038914          343 YCK--TKDVEEGLNLYRKMLSKGIRPTVVTYHT----LFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKN  416 (570)
Q Consensus       343 ~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  416 (570)
                      +.+  ..+.+.|..++......... +......    +.......+..+.+...+......+  .+.......+......
T Consensus       222 l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~  298 (450)
T d1qsaa1         222 FASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT  298 (450)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred             HHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHc
Confidence            222  23555666666655443211 1111111    1112223444555555555554432  2333333333344455


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHH
Q 038914          417 GYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVGLMADVVTYNIMIHGLCNDGQ-MDKAHGL  495 (570)
Q Consensus       417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~  495 (570)
                      ++...+...+..+.... .......--+..++...|+.+.|...|..+..   .++   |-..+.+ .+.|. +.-... 
T Consensus       299 ~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~Lg~~~~~~~~-  369 (450)
T d1qsaa1         299 GDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRIGEEYELKID-  369 (450)
T ss_dssp             TCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHTTCCCCCCCC-
T ss_pred             CChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHcCCCCCCCcC-
Confidence            66666666665543211 11122223345556666666666666666553   122   2222211 11111 000000 


Q ss_pred             HHHHHHCCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcccccchhhhh
Q 038914          496 FLDMEAKGLEPN-FVI---FNTLMLGFIRNNETSKVIELLHRMDMRNVMPDASTLSIVVDLLVKNEISLNSIPQFKR  568 (570)
Q Consensus       496 ~~~~~~~~~~p~-~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  568 (570)
                           .....+. ...   -...+..+...|....|...+..+...   .+......+.....+.|+++-||....+
T Consensus       370 -----~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~  438 (450)
T d1qsaa1         370 -----KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA  438 (450)
T ss_dssp             -----CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence                 0000001 000   112356678899999999999988743   3566777888999999999988877654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0095  Score=42.16  Aligned_cols=62  Identities=8%  Similarity=-0.078  Sum_probs=51.2

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038914           52 TITPNDALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYAYNIL  116 (570)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (570)
                      ..+.+.|+.+|+.+.+.+| ......++.++.++.+.|++++|++.++.+++.  .|+......+
T Consensus        51 ~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~qA~~L  112 (124)
T d2pqrb1          51 VNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGAL  112 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHHHHHH
Confidence            3467899999999998887 334578999999999999999999999999998  7776544433

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.65  E-value=0.42  Score=33.23  Aligned_cols=59  Identities=20%  Similarity=0.112  Sum_probs=26.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 038914          409 FIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCLIDGLCKHGRLEIAWELFSSLPRVG  468 (570)
Q Consensus       409 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  468 (570)
                      .+..+..+|.-++-.++++.+.+.+ .+++.....+..+|.+.|...++.+++.++-+.|
T Consensus        92 ALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          92 ALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            3334444444444444444443322 4444444444444444444444444444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.60  E-value=0.21  Score=35.13  Aligned_cols=71  Identities=13%  Similarity=0.077  Sum_probs=43.6

Q ss_pred             CChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038914          471 ADVVTYNIMIHGLCNDG---QMDKAHGLFLDMEAKGLEPNF-VIFNTLMLGFIRNNETSKVIELLHRMDMRNVMPDAS  544 (570)
Q Consensus       471 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  544 (570)
                      ++..+--.++++++++.   +.++++.++++..+.+ +.+. ..+..+..+|.+.|++++|.+.++++++.  .|+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~  107 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK  107 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence            44445555666666554   4456777777776542 2232 45566677777777777777777777753  45533

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.23  E-value=1.2  Score=30.93  Aligned_cols=60  Identities=13%  Similarity=0.036  Sum_probs=30.2

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038914          373 TLFLGLFEVHQVEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILK  433 (570)
Q Consensus       373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  433 (570)
                      ..+..+...|+-+...+++..+.+.+ .+++..+..+..+|.+.|...++.+++.++-+.|
T Consensus        91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            33444445555555555555544432 4455555555555555555555555555555444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.69  E-value=1.6  Score=28.66  Aligned_cols=40  Identities=15%  Similarity=0.216  Sum_probs=19.1

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038914          496 FLDMEAKGLEPNFVIFNTLMLGFIRNNETSKVIELLHRMD  535 (570)
Q Consensus       496 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  535 (570)
                      +..+....+-|++.+..+.+++|.+.+++.-|.++++-..
T Consensus        29 mN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          29 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333333444455555555555555555555555554444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.31  E-value=3.5  Score=26.99  Aligned_cols=60  Identities=8%  Similarity=0.029  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038914          384 VEHALKLFDEMRRNHVAANTYIYTTFIDGLCKNGYIVKAVELFRTLRILKYELNIVSYNCL  444 (570)
Q Consensus       384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  444 (570)
                      .=++.+-+..+...+..|++.+..+.+++|.+.+++..|.++|+.+.... .++...|..+
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yi   81 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYV   81 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHH
Confidence            33444555555555666666666666666666666666666666665432 2233444444